RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11963
(172 letters)
>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme,
megasynthase, fatty acid synthesis; 3.2A {Sus scrofa}
PDB: 2vz9_A*
Length = 2512
Score = 145 bits (368), Expect = 4e-41
Identities = 65/108 (60%), Positives = 85/108 (78%)
Query: 62 GLYGAPSRTGKIKDIASFDAEFFGIHSKLANVMDPQLRMLLELTHESIMDGGFNPEELRG 121
GLYG P R GK+KD++ FDA FFG+HSK AN MDPQLRMLLE+T+E+I+DGG NP LRG
Sbjct: 43 GLYGLPRRMGKLKDLSRFDASFFGVHSKQANTMDPQLRMLLEVTYEAIVDGGINPASLRG 102
Query: 122 TRTGVYIGLMTTEANDFAEGNPEKLTGYETIGSTRAMLANRLSYAFNF 169
T TGV++G+ +++A++ +PE L GY IG RAM+ANRLS+ F+F
Sbjct: 103 TSTGVWVGVSSSDASEALSRDPETLVGYSMIGCQRAMMANRLSFFFDF 150
Score = 75.7 bits (186), Expect = 1e-16
Identities = 35/69 (50%), Positives = 47/69 (68%), Gaps = 4/69 (5%)
Query: 2 DGGFNPEELRGTRTGVYIGLMTTEANDFAEGNPEKLTGYETIGSTRAMLANRLSYAFNFS 61
DGG NP LRGT TGV++G+ +++A++ +PE L GY IG RAM+ANRLS+ F+F
Sbjct: 92 DGGINPASLRGTSTGVWVGVSSSDASEALSRDPETLVGYSMIGCQRAMMANRLSFFFDFK 151
Query: 62 GLYGAPSRT 70
G PS T
Sbjct: 152 G----PSIT 156
>3hhd_A Fatty acid synthase; transferase, multienzyme, megasynthase, fatty
acid synthesis, acetylation, cytoplasm, fatty acid
biosynthesis, hydrolase; 2.15A {Homo sapiens} PDB:
2jfk_A* 2jfd_A
Length = 965
Score = 143 bits (364), Expect = 2e-40
Identities = 61/108 (56%), Positives = 84/108 (77%)
Query: 62 GLYGAPSRTGKIKDIASFDAEFFGIHSKLANVMDPQLRMLLELTHESIMDGGFNPEELRG 121
GLYG P R+GK+KD++ FDA FFG+H K A+ MDPQLR+LLE+T+E+I+DGG NP+ LRG
Sbjct: 45 GLYGLPRRSGKLKDLSRFDASFFGVHPKQAHTMDPQLRLLLEVTYEAIVDGGINPDSLRG 104
Query: 122 TRTGVYIGLMTTEANDFAEGNPEKLTGYETIGSTRAMLANRLSYAFNF 169
T TGV++G+ +E ++ +PE L GY +G RAM+ANRLS+ F+F
Sbjct: 105 THTGVWVGVSGSETSEALSRDPETLVGYSMVGCQRAMMANRLSFFFDF 152
Score = 76.4 bits (189), Expect = 6e-17
Identities = 31/61 (50%), Positives = 43/61 (70%)
Query: 2 DGGFNPEELRGTRTGVYIGLMTTEANDFAEGNPEKLTGYETIGSTRAMLANRLSYAFNFS 61
DGG NP+ LRGT TGV++G+ +E ++ +PE L GY +G RAM+ANRLS+ F+F
Sbjct: 94 DGGINPDSLRGTHTGVWVGVSGSETSEALSRDPETLVGYSMVGCQRAMMANRLSFFFDFR 153
Query: 62 G 62
G
Sbjct: 154 G 154
>2qo3_A Eryaii erythromycin polyketide synthase modules 3; ketosynthase,
acyltransferase, phosphopantetheine, transfera; 2.59A
{Saccharopolyspora erythraea}
Length = 915
Score = 105 bits (264), Expect = 4e-27
Identities = 41/119 (34%), Positives = 58/119 (48%), Gaps = 14/119 (11%)
Query: 62 GLYGA-PSRTGK--------IKDIASFDAEFFGIHSKLANVMDPQLRMLLELTHESIMDG 112
L+ P G + D A FDAEFFG+ + A MDPQ R+LLE + E + +
Sbjct: 51 RLHHPDPDNPGTSYVDKGGFLDDAAGFDAEFFGVSPREAAAMDPQQRLLLETSWELVENA 110
Query: 113 GFNPEELRGTRTGVYIGLMTTEANDFAE--GNPEKLTGYETIGSTRAMLANRLSYAFNF 169
G +P LRGT TGV++G+ + E E + GY G A+ + R+SY
Sbjct: 111 GIDPHSLRGTATGVFLGVA---KFGYGEDTAAAEDVEGYSVTGVAPAVASGRISYTMGL 166
Score = 58.0 bits (141), Expect = 1e-10
Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 5/61 (8%)
Query: 4 GFNPEELRGTRTGVYIGLMTTEANDFAE--GNPEKLTGYETIGSTRAMLANRLSYAFNFS 61
G +P LRGT TGV++G+ + E E + GY G A+ + R+SY
Sbjct: 111 GIDPHSLRGTATGVFLGVA---KFGYGEDTAAAEDVEGYSVTGVAPAVASGRISYTMGLE 167
Query: 62 G 62
G
Sbjct: 168 G 168
>2hg4_A DEBS, 6-deoxyerythronolide B synthase; ketosynthase,
acyltransferase, module 5, transferase; 2.73A
{Saccharopolyspora erythraea}
Length = 917
Score = 104 bits (262), Expect = 8e-27
Identities = 33/99 (33%), Positives = 56/99 (56%)
Query: 71 GKIKDIASFDAEFFGIHSKLANVMDPQLRMLLELTHESIMDGGFNPEELRGTRTGVYIGL 130
G + FDA FFGI + A MDPQ R++LE++ E++ G +P LRG+ TGV+ G+
Sbjct: 90 GMLAAAGDFDAGFFGISPREALAMDPQQRIMLEISWEALERAGHDPVSLRGSATGVFTGV 149
Query: 131 MTTEANDFAEGNPEKLTGYETIGSTRAMLANRLSYAFNF 169
T + + P+++ GY G+ ++ + R++Y
Sbjct: 150 GTVDYGPRPDEAPDEVLGYVGTGTASSVASGRVAYCLGL 188
Score = 60.4 bits (147), Expect = 2e-11
Identities = 17/59 (28%), Positives = 32/59 (54%)
Query: 4 GFNPEELRGTRTGVYIGLMTTEANDFAEGNPEKLTGYETIGSTRAMLANRLSYAFNFSG 62
G +P LRG+ TGV+ G+ T + + P+++ GY G+ ++ + R++Y G
Sbjct: 132 GHDPVSLRGSATGVFTGVGTVDYGPRPDEAPDEVLGYVGTGTASSVASGRVAYCLGLEG 190
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 38.3 bits (89), Expect = 7e-04
Identities = 21/140 (15%), Positives = 43/140 (30%), Gaps = 31/140 (22%)
Query: 25 EANDFAEGNPEKLTGYETIGSTRAMLANRLSYAFNFSGLYGAPSRTGKIKD----IA--- 77
A F + +K+ +E + + L GA K +A
Sbjct: 941 TAEQFKHQHGDKVDIFEIPETGEYSVK----------LLKGATLYIPKALRFDRLVAGQI 990
Query: 78 --SFDAEFFGIHSKLANVMDPQLRMLLELTHESIMDGGFNP-----EELRGTRTGVYI-- 128
++A+ +GI + + +DP +L E+ + G + + + G
Sbjct: 991 PTGWNAKTYGISDDIISQVDPITLFVLVSVVEAFIASGITDPYEMYKYVHVSEVGNCSGS 1050
Query: 129 ---GLMTTEAN--DFAEGNP 143
G+ D + P
Sbjct: 1051 GMGGVSALRGMFKDRFKDEP 1070
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 37.3 bits (86), Expect = 0.002
Identities = 37/219 (16%), Positives = 63/219 (28%), Gaps = 107/219 (48%)
Query: 4 GFNPEELRGTRTGV----------------------------------YIGL-------- 21
GF P ELR G +IG+
Sbjct: 257 GFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPN 316
Query: 22 ------MTTEANDFAEGNP-----------EKLTGYETIGSTRAML--ANRLSYA-FN-- 59
+ ++ + EG P E++ + + T + L ++ + N
Sbjct: 317 TSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQ--DYVNKTNSHLPAGKQVEISLVNGA 374
Query: 60 --F--SG----LYG---------APSRTGKIKDIAS-----FDAEF------FGIHSKLA 91
SG LYG APS + + S F F F HS L
Sbjct: 375 KNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPF--HSHL- 431
Query: 92 NVMDPQLRMLLE-LTHESIMDGGFNPEELR----GTRTG 125
+ P ++ + L ++ FN ++++ T G
Sbjct: 432 --LVPASDLINKDLVKNNVS---FNAKDIQIPVYDTFDG 465
>1tqy_B Actinorhodin polyketide putative beta-ketoacyl SY;
alpha-beta-alpha-beta-alpha, heterodimer, transferase;
2.00A {Streptomyces coelicolor} SCOP: c.95.1.1 c.95.1.1
Length = 415
Score = 32.8 bits (76), Expect = 0.036
Identities = 17/59 (28%), Positives = 23/59 (38%), Gaps = 4/59 (6%)
Query: 71 GKIKDIASFDAEFFGIHSKLANVMDPQLRMLLELTHESIMDGGFNPEELRGTRTGVYIG 129
G+I D F A I +L DP R+ L ++ D +PE L GV
Sbjct: 57 GQIDD---FHAPDH-IPGRLLPQTDPSTRLALTAADWALQDAKADPESLTDYDMGVVTA 111
>3ho9_A 3-oxoacyl-[acyl-carrier-protein] synthase 2; FABF, platensimycin,
platencin A1, KAS2, acyltransferase, fatty acid
biosynthesis; HET: N3A; 1.90A {Escherichia coli} PDB:
3hnz_A* 3ho2_A* 3i8p_A* 3g11_A* 2gfx_A* 3g0y_A* 2gfv_A*
2gfw_A 2gfy_A* 1kas_A 1b3n_A
Length = 427
Score = 31.8 bits (73), Expect = 0.099
Identities = 23/82 (28%), Positives = 31/82 (37%), Gaps = 11/82 (13%)
Query: 71 GKIKDIASFDAEFFGIHSKLANVMDPQLRMLLELTHESIMDGGFNPEELRGTRTGVYI-- 128
G +KD F+ E I K MD ++ + +++ D G E TR G I
Sbjct: 66 GLVKD---FNCEDI-ISRKEQRKMDAFIQYGIVAGVQAMQDSGLEITEENATRIGAAIGS 121
Query: 129 ---GLMTTEAN--DFAEGNPEK 145
GL E N G P K
Sbjct: 122 GIGGLGLIEENHTSLMNGGPRK 143
Score = 26.4 bits (59), Expect = 5.8
Identities = 14/42 (33%), Positives = 14/42 (33%), Gaps = 7/42 (16%)
Query: 2 DGGFNPEELRGTRTGVYI-----GLMTTEAN--DFAEGNPEK 36
D G E TR G I GL E N G P K
Sbjct: 102 DSGLEITEENATRIGAAIGSGIGGLGLIEENHTSLMNGGPRK 143
>1e5m_A KAS II, beta ketoacyl acyl carrier protein synthase II; condensing
enzyme, biosynthetic role, carbon-carbon bond formation;
1.54A {Synechocystis SP} SCOP: c.95.1.1 c.95.1.1
Length = 416
Score = 31.3 bits (72), Expect = 0.11
Identities = 22/82 (26%), Positives = 31/82 (37%), Gaps = 11/82 (13%)
Query: 71 GKIKDIASFDAEFFGIHSKLANVMDPQLRMLLELTHESIMDGGFNPEELRGTRTGVYI-- 128
G++KD FDA F + K A MD + + ++I D EL GV I
Sbjct: 55 GEVKD---FDATQF-LDRKEAKRMDRFCHFAVCASQQAINDAKLVINELNADEIGVLIGT 110
Query: 129 ---GLMTTEAN--DFAEGNPEK 145
GL E + P +
Sbjct: 111 GIGGLKVLEDQQTILLDKGPSR 132
Score = 26.3 bits (59), Expect = 6.2
Identities = 10/42 (23%), Positives = 12/42 (28%), Gaps = 7/42 (16%)
Query: 2 DGGFNPEELRGTRTGVYI-----GLMTTEAN--DFAEGNPEK 36
D EL GV I GL E + P +
Sbjct: 91 DAKLVINELNADEIGVLIGTGIGGLKVLEDQQTILLDKGPSR 132
>2gqd_A 3-oxoacyl-[acyl-carrier-protein] synthase 2; duplicated babababb
fold, transferase; 2.30A {Staphylococcus aureus}
Length = 437
Score = 31.4 bits (72), Expect = 0.13
Identities = 20/82 (24%), Positives = 33/82 (40%), Gaps = 11/82 (13%)
Query: 71 GKIKDIASFDAEFFGIHSKLANVMDPQLRMLLELTHESIMDGGFNPEELRGTRTGVYI-- 128
G++K+ F+ E I K A MD + + E++ D + E R GV+I
Sbjct: 76 GELKN---FNIEDH-IDKKEARRMDRFTQYAIVAAREAVKDAQLDINENTADRIGVWIGS 131
Query: 129 ---GLMTTEAN--DFAEGNPEK 145
G+ T E + P +
Sbjct: 132 GIGGMETFEIAHKQLMDKGPRR 153
Score = 26.0 bits (58), Expect = 7.1
Identities = 10/42 (23%), Positives = 15/42 (35%), Gaps = 7/42 (16%)
Query: 2 DGGFNPEELRGTRTGVYI-----GLMTTEAN--DFAEGNPEK 36
D + E R GV+I G+ T E + P +
Sbjct: 112 DAQLDINENTADRIGVWIGSGIGGMETFEIAHKQLMDKGPRR 153
>3o04_A LMO2201 protein, beta-keto-acyl carrier protein synthase II; csgid,
structural genomics; 1.85A {Listeria monocytogenes}
Length = 413
Score = 31.3 bits (72), Expect = 0.15
Identities = 19/82 (23%), Positives = 31/82 (37%), Gaps = 11/82 (13%)
Query: 71 GKIKDIASFDAEFFGIHSKLANVMDPQLRMLLELTHESIMDGGFNPEELRGTRTGVYI-- 128
++KD FD E + + K A MD + ++ D G ++ R GV+I
Sbjct: 52 AELKD---FDVEKY-LEKKEARKMDRFTHYAIASAEMAVQDSGLVIDDSNANRVGVWIGS 107
Query: 129 ---GLMTTEAN--DFAEGNPEK 145
G+ T E F +
Sbjct: 108 GIGGMETFETQYEIFLNRGHRR 129
Score = 26.3 bits (59), Expect = 6.3
Identities = 10/42 (23%), Positives = 15/42 (35%), Gaps = 7/42 (16%)
Query: 2 DGGFNPEELRGTRTGVYI-----GLMTTEAN--DFAEGNPEK 36
D G ++ R GV+I G+ T E F +
Sbjct: 88 DSGLVIDDSNANRVGVWIGSGIGGMETFETQYEIFLNRGHRR 129
>1ox0_A Beta ketoacyl-acyl carrier protein synthase; transferase; 1.30A
{Streptococcus pneumoniae} SCOP: c.95.1.1 c.95.1.1 PDB:
1oxh_A 2alm_A 2rjt_A
Length = 430
Score = 30.9 bits (71), Expect = 0.18
Identities = 17/82 (20%), Positives = 28/82 (34%), Gaps = 11/82 (13%)
Query: 71 GKIKDIASFDAEFFGIHSKLANVMDPQLRMLLELTHESIMDGGFNPEELRGTRTGVYI-- 128
+I+D F + + K N D L E++ + E L R GV +
Sbjct: 71 AEIQD---FPFDKY-FVKKDTNRFDNYSLYALYAAQEAVNHANLDVEALNRDRFGVIVAS 126
Query: 129 ---GLMTTEAN--DFAEGNPEK 145
G+ E E P++
Sbjct: 127 GIGGIKEIEDQVLRLHEKGPKR 148
>1j3n_A 3-oxoacyl-(acyl-carrier protein) synthase II; condensing enzymes,
fatty acid elongation, acyl-carrier protein (ACP); HET:
CIT; 2.00A {Thermus thermophilus} SCOP: c.95.1.1
c.95.1.1
Length = 408
Score = 30.2 bits (69), Expect = 0.31
Identities = 18/74 (24%), Positives = 29/74 (39%), Gaps = 8/74 (10%)
Query: 79 FDAEFFGIHSKLANVMDPQLRMLLELTHESIMDGGFNPEELRGTRTGVYI-----GLMTT 133
D + + K +D ++ L ++ D G PE+L R G + G+ T
Sbjct: 54 VDPGAY-LDRKELRRLDRFVQYALIAAQLALEDAGLKPEDLDPERVGTLVGTGIGGMETW 112
Query: 134 EAN--DFAEGNPEK 145
EA F E P +
Sbjct: 113 EAQSRVFLERGPNR 126
Score = 26.3 bits (59), Expect = 5.9
Identities = 14/42 (33%), Positives = 18/42 (42%), Gaps = 7/42 (16%)
Query: 2 DGGFNPEELRGTRTGVYI-----GLMTTEAN--DFAEGNPEK 36
D G PE+L R G + G+ T EA F E P +
Sbjct: 85 DAGLKPEDLDPERVGTLVGTGIGGMETWEAQSRVFLERGPNR 126
>2uv8_A Fatty acid synthase subunit alpha (FAS2); fatty acid biosynthesis,
malonyl/palmitoyl transferase, phosphopantetheine,
transferase; HET: GVL FMN; 3.10A {Saccharomyces
cerevisiae} PDB: 2vkz_A* 3hmj_A*
Length = 1887
Score = 29.6 bits (66), Expect = 0.60
Identities = 10/56 (17%), Positives = 23/56 (41%), Gaps = 5/56 (8%)
Query: 79 FDAEFFGIHSKLANVMDPQLRMLLELTHESIMDGGFNP-----EELRGTRTGVYIG 129
++A+ +GI + + +DP +L E+ + G + + + G G
Sbjct: 1193 WNAKTYGISDDIISQVDPITLFVLVSVVEAFIASGITDPYEMYKYVHVSEVGNCSG 1248
>1tqy_A Beta-ketoacyl synthase/acyl transferase;
alpha-beta-alpha-beta-alpha, heterodimer, transferase;
2.00A {Streptomyces coelicolor} SCOP: c.95.1.1 c.95.1.1
Length = 424
Score = 29.0 bits (66), Expect = 0.80
Identities = 17/88 (19%), Positives = 29/88 (32%), Gaps = 21/88 (23%)
Query: 69 RTGKIKDIASFDAEFF---------------GIHSKLANVMDPQLRMLLELTHESIMDGG 113
RT + I+ FD + G + + MD + + E+ G
Sbjct: 31 RTA-TRRISFFDPSPYRSQVAAEADFDPVAEGFGPRELDRMDRASQFAVACAREAFAASG 89
Query: 114 FNPEELRGTRTGVYIG-----LMTTEAN 136
+P+ L R GV +G + E
Sbjct: 90 LDPDTLDPARVGVSLGSAVAAATSLERE 117
>4ewg_A Beta-ketoacyl synthase; ssgcid, structural genomics, seattle
structural genomics CEN infectious disease, transferase;
2.25A {Burkholderia phymatum}
Length = 412
Score = 28.6 bits (65), Expect = 1.0
Identities = 13/85 (15%), Positives = 22/85 (25%), Gaps = 12/85 (14%)
Query: 71 GKIKDIASFDAEFFGIHSKLANVMDPQLRMLLELTHESIMDGGFNP-EELRGTRTGVYIG 129
+ F K M + + ++ D GF E + R GV G
Sbjct: 55 APLPG---FAQPAD-WPRKKTRSMGRVSMYAVRASELALADAGFAGDESISDGRMGVAYG 110
Query: 130 -------LMTTEANDFAEGNPEKLT 147
+ G+ +T
Sbjct: 111 SSSGSVEPIRAFGTMLESGSMTDVT 135
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 28.7 bits (63), Expect = 1.1
Identities = 15/98 (15%), Positives = 32/98 (32%), Gaps = 30/98 (30%)
Query: 87 HSKLANVMDPQLRMLL--------------ELTHESIMD--GGFNPEELRGTRTGVYIGL 130
++K N + ++LL TH S+ P+E++ + +
Sbjct: 255 NAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVK----SLLLKY 310
Query: 131 MTTEANDFAE----GNPEKLTGYETIGSTRAMLANRLS 164
+ D NP +L+ I + + L+
Sbjct: 311 LDCRPQDLPREVLTTNPRRLS---IIA---ESIRDGLA 342
>2uv9_A Fatty acid synthase alpha subunits; fungal, dehydratase, enoyl
reductase, ketoacyl synthase, ketoacyl reductase; 3.1A
{Thermomyces lanuginosus} PDB: 2uvb_A*
Length = 1878
Score = 28.7 bits (64), Expect = 1.2
Identities = 11/56 (19%), Positives = 23/56 (41%), Gaps = 5/56 (8%)
Query: 79 FDAEFFGIHSKLANVMDPQLRMLLELTHESIMDGGFNP-----EELRGTRTGVYIG 129
+DA +G+ + +DP +L E+++ G + + + G IG
Sbjct: 1168 WDARRYGVPEDIIQQVDPVTLYVLVSVAEALLSSGITDPYEFYKYVHLSEVGNCIG 1223
>3mqd_A Beta-ketoacyl synthase; ssgcid, ALS collaborative crystallography,
beta-ketoacyl SYN brucella melitensis, fragments of
LIFE; HET: 3MQ; 1.25A {Brucella melitensis biovar
abortus} PDB: 3lrf_A* 3u0e_A* 3u0f_A*
Length = 428
Score = 28.3 bits (64), Expect = 1.2
Identities = 13/72 (18%), Positives = 22/72 (30%), Gaps = 7/72 (9%)
Query: 58 FNFSGLYGAPSRTGKIKDIASFDAEFFGIHSKLANVMDPQLRMLLELTHESIMDGGFNPE 117
+ G + D D E + + ++I D G E
Sbjct: 60 YAELGF---RCQVHGAPD---IDIESL-VDRRAMRFHGRGTAWNHIAMDQAIADAGLTEE 112
Query: 118 ELRGTRTGVYIG 129
E+ RTG+ +G
Sbjct: 113 EVSNERTGIIMG 124
>4ddo_A 3-oxoacyl-[acyl-carrier-protein] synthase 2; ssgcid, struct
genomics, seattle structural genomics center for
infectious transferase; 1.90A {Burkholderia
vietnamiensis} PDB: 4f32_A*
Length = 451
Score = 27.5 bits (62), Expect = 2.4
Identities = 18/89 (20%), Positives = 33/89 (37%), Gaps = 14/89 (15%)
Query: 71 GKIKDIAS-----FDAEFFGIHSKLANVMDPQLRMLLELTHESIMDGGFNPE-ELRGTRT 124
G ++D+A FD E + K MD ++M + E++ + G+ PE E + RT
Sbjct: 72 GTVQDVAEDPEGGFDPERS-VPHKELRKMDRFIQMAMVAADEALAEAGWAPEAEQQRERT 130
Query: 125 GVYIG-------LMTTEANDFAEGNPEKL 146
+ + +L
Sbjct: 131 ATVVASGIGGFPGLAEAVRIGETRGVRRL 159
>1vho_A Endoglucanase; structural genomics, unknown function; HET: MSE;
1.86A {Thermotoga maritima} SCOP: b.49.3.1 c.56.5.4
Length = 346
Score = 27.3 bits (61), Expect = 2.5
Identities = 21/102 (20%), Positives = 34/102 (33%), Gaps = 20/102 (19%)
Query: 65 GAPSRTGKIKDIASFDAEFFGIHSKLA----------NVMDPQLRMLLELTHESIMDGGF 114
R ++ DIA D F + K+ V+ L L H + F
Sbjct: 141 SLCERGVRVGDIAVIDQTAFETNGKVVGKALDNRASCGVLVKVLEFLKRYDHPWDVYVVF 200
Query: 115 NPEE---LRGTRTGVY-------IGLMTTEANDFAEGNPEKL 146
+ +E G TG Y I + T A++ + +L
Sbjct: 201 SVQEETGCLGALTGAYEINPDAAIVMDVTFASEPPFSDHIEL 242
>2zuv_A Lacto-N-biose phosphorylase; beta-alpha-barrel, TIM barrel,
glycosyltransferase, transferase; HET: NDG; 1.85A
{Bifidobacterium longum} PDB: 2zus_A* 2zuu_A* 2zut_A*
2zuw_A*
Length = 759
Score = 27.6 bits (61), Expect = 2.8
Identities = 7/38 (18%), Positives = 14/38 (36%), Gaps = 1/38 (2%)
Query: 2 DGGFNPEELRGTRTGVYIGLMTTEA-NDFAEGNPEKLT 38
DG E + +Y T A N++ + ++
Sbjct: 35 DGTHLDEAVLALGKKIYNAYFPTRAHNEWITLHMDETP 72
Score = 27.6 bits (61), Expect = 2.8
Identities = 7/38 (18%), Positives = 14/38 (36%), Gaps = 1/38 (2%)
Query: 111 DGGFNPEELRGTRTGVYIGLMTTEA-NDFAEGNPEKLT 147
DG E + +Y T A N++ + ++
Sbjct: 35 DGTHLDEAVLALGKKIYNAYFPTRAHNEWITLHMDETP 72
>2iwz_A 3-oxoacyl-[acyl-carrier-protein] synthase; mitochondria,
mitochondrion, lipid synthesis, fatty acid SYN fatty
acid biosynthesis; 1.65A {Homo sapiens} PDB: 2iwy_A
2c9h_A
Length = 438
Score = 27.1 bits (61), Expect = 3.2
Identities = 16/76 (21%), Positives = 30/76 (39%), Gaps = 9/76 (11%)
Query: 79 FDAEFFGIHSKLANVMDPQLRMLLELTHESIMDGGFNPE-ELRGTRTGVYIG-------L 130
F+ + F + M M + ++ D G++P+ E TGV IG +
Sbjct: 80 FNEQNF-VSKSDIKSMSSPTIMAIGAAELAMKDSGWHPQSEADQVATGVAIGMGMIPLEV 138
Query: 131 MTTEANDFAEGNPEKL 146
++ A +F K+
Sbjct: 139 VSETALNFQTKGYNKV 154
>3ahq_A ERO1-like protein alpha; disulfide bond, PDI, redox, hyperactive
human ERO1, oxidored; HET: FAD; 2.35A {Homo sapiens}
PDB: 3ahr_A*
Length = 465
Score = 27.1 bits (59), Expect = 3.4
Identities = 11/62 (17%), Positives = 23/62 (37%), Gaps = 9/62 (14%)
Query: 95 DPQLRMLLELTHESIMDGGFNPEELRGTRTGVYIGLMTTEANDFAEGNPEKLTGYETIGS 154
+ + +L+ T F + + Y+ L+ NPE+ TGY+ +
Sbjct: 143 EETQKAVLQWTKHDDSSDNFAEADDIQSPEAEYVDLLL---------NPERYTGYKGPDA 193
Query: 155 TR 156
+
Sbjct: 194 WK 195
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.136 0.389
Gapped
Lambda K H
0.267 0.0839 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,711,998
Number of extensions: 159456
Number of successful extensions: 371
Number of sequences better than 10.0: 1
Number of HSP's gapped: 366
Number of HSP's successfully gapped: 45
Length of query: 172
Length of database: 6,701,793
Length adjustment: 87
Effective length of query: 85
Effective length of database: 4,272,666
Effective search space: 363176610
Effective search space used: 363176610
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (24.4 bits)