RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy11963
(172 letters)
>d2gfva1 c.95.1.1 (A:2-251) Beta-ketoacyl-ACP synthase II
{Escherichia coli [TaxId: 562]}
Length = 250
Score = 54.4 bits (130), Expect = 5e-10
Identities = 20/113 (17%), Positives = 37/113 (32%), Gaps = 7/113 (6%)
Query: 64 YGAPSRTGKIKDIASFDAEFFGIHSKLANVMDPQLRMLLELTHESIMDGGFNPEELRGTR 123
+ + K + I K MD ++ + +++ D G E TR
Sbjct: 39 FDTSAYATKFAGLVKDFNCEDIISRKEQRKMDAFIQYGIVAGVQAMQDSGLEITEENATR 98
Query: 124 TGVYIG-------LMTTEANDFAEGNPEKLTGYETIGSTRAMLANRLSYAFNF 169
G IG L+ G P K++ + + M+A L+ +
Sbjct: 99 IGAAIGSGIGGLGLIEENHTSLMNGGPRKISPFFVPSTIVNMVAGHLTIMYGL 151
Score = 41.7 bits (97), Expect = 1e-05
Identities = 16/68 (23%), Positives = 24/68 (35%), Gaps = 7/68 (10%)
Query: 2 DGGFNPEELRGTRTGVYIG-------LMTTEANDFAEGNPEKLTGYETIGSTRAMLANRL 54
D G E TR G IG L+ G P K++ + + M+A L
Sbjct: 86 DSGLEITEENATRIGAAIGSGIGGLGLIEENHTSLMNGGPRKISPFFVPSTIVNMVAGHL 145
Query: 55 SYAFNFSG 62
+ + G
Sbjct: 146 TIMYGLRG 153
>d1j3na1 c.95.1.1 (A:1-249) Beta-ketoacyl-ACP synthase II {Thermus
thermophilus [TaxId: 274]}
Length = 249
Score = 51.6 bits (123), Expect = 4e-09
Identities = 16/94 (17%), Positives = 34/94 (36%), Gaps = 7/94 (7%)
Query: 83 FFGIHSKLANVMDPQLRMLLELTHESIMDGGFNPEELRGTRTGVYIG-------LMTTEA 135
+ K +D ++ L ++ D G PE+L R G +G ++
Sbjct: 57 GAYLDRKELRRLDRFVQYALIAAQLALEDAGLKPEDLDPERVGTLVGTGIGGMETWEAQS 116
Query: 136 NDFAEGNPEKLTGYETIGSTRAMLANRLSYAFNF 169
F E P +++ + M + ++ + F
Sbjct: 117 RVFLERGPNRISPFFIPMMIANMASAHIAMRYGF 150
Score = 38.9 bits (90), Expect = 1e-04
Identities = 14/68 (20%), Positives = 27/68 (39%), Gaps = 7/68 (10%)
Query: 2 DGGFNPEELRGTRTGVYIG-------LMTTEANDFAEGNPEKLTGYETIGSTRAMLANRL 54
D G PE+L R G +G ++ F E P +++ + M + +
Sbjct: 85 DAGLKPEDLDPERVGTLVGTGIGGMETWEAQSRVFLERGPNRISPFFIPMMIANMASAHI 144
Query: 55 SYAFNFSG 62
+ + F+G
Sbjct: 145 AMRYGFTG 152
>d1ox0a1 c.95.1.1 (A:-5-251) Beta-ketoacyl-ACP synthase II
{Streptococcus pneumoniae [TaxId: 1313]}
Length = 256
Score = 41.8 bits (97), Expect = 1e-05
Identities = 14/94 (14%), Positives = 27/94 (28%), Gaps = 7/94 (7%)
Query: 83 FFGIHSKLANVMDPQLRMLLELTHESIMDGGFNPEELRGTRTGVYIG-------LMTTEA 135
K N D L E++ + E L R GV + + +
Sbjct: 65 DKYFVKKDTNRFDNYSLYALYAAQEAVNHANLDVEALNRDRFGVIVASGIGGIKEIEDQV 124
Query: 136 NDFAEGNPEKLTGYETIGSTRAMLANRLSYAFNF 169
E P+++ + M + ++ F
Sbjct: 125 LRLHEKGPKRVKPMTLPKALPNMASGNVAMRFGA 158
Score = 37.2 bits (85), Expect = 4e-04
Identities = 19/119 (15%), Positives = 35/119 (29%), Gaps = 11/119 (9%)
Query: 4 GFNPEELRGTRTGVYIG-------LMTTEANDFAEGNPEKLTGYETIGSTRAMLANRLSY 56
+ E L R GV + + + E P+++ + M + ++
Sbjct: 95 NLDVEALNRDRFGVIVASGIGGIKEIEDQVLRLHEKGPKRVKPMTLPKALPNMASGNVAM 154
Query: 57 AFNFSGLYGAPSRTGKIKDIASFDAEFFGIHSKLANVMDPQLRMLLELTHESIMDGGFN 115
F +G ++ +S DA S D L E + GF
Sbjct: 155 RFGANG----VCKSINTACSSSNDAIGDAFRSIKFGFQDVMLVGGTEASITPFAIAGFQ 209
>d1e5ma1 c.95.1.1 (A:6-255) Beta-ketoacyl-ACP synthase II
{Synechocystis sp. [TaxId: 1143]}
Length = 250
Score = 39.9 bits (92), Expect = 6e-05
Identities = 15/113 (13%), Positives = 32/113 (28%), Gaps = 7/113 (6%)
Query: 64 YGAPSRTGKIKDIASFDAEFFGIHSKLANVMDPQLRMLLELTHESIMDGGFNPEELRGTR 123
+ A + + + K A MD + + ++I D EL
Sbjct: 39 FDASDQACRFGGEVKDFDATQFLDRKEAKRMDRFCHFAVCASQQAINDAKLVINELNADE 98
Query: 124 TGVYIG-------LMTTEANDFAEGNPEKLTGYETIGSTRAMLANRLSYAFNF 169
GV IG ++ + + P + + + M + +
Sbjct: 99 IGVLIGTGIGGLKVLEDQQTILLDKGPSRCSPFMIPMMIANMASGLTAINLGA 151
Score = 25.3 bits (54), Expect = 4.9
Identities = 9/71 (12%), Positives = 18/71 (25%), Gaps = 7/71 (9%)
Query: 4 GFNPEELRGTRTGVYIG-------LMTTEANDFAEGNPEKLTGYETIGSTRAMLANRLSY 56
EL GV IG ++ + + P + + + M + +
Sbjct: 88 KLVINELNADEIGVLIGTGIGGLKVLEDQQTILLDKGPSRCSPFMIPMMIANMASGLTAI 147
Query: 57 AFNFSGLYGAP 67
G
Sbjct: 148 NLGAKGPNNCT 158
>d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus
niger [TaxId: 5061]}
Length = 385
Score = 25.6 bits (55), Expect = 4.2
Identities = 14/53 (26%), Positives = 22/53 (41%), Gaps = 15/53 (28%)
Query: 125 GVYIGLMTTEANDFAEGNPEKLTG--YETI----GSTRAMLANRLSYAFNFSV 171
G+ L+T +P+ ++G + I G T A RL+ N SV
Sbjct: 1 GIEASLLT---------DPKDVSGRTVDYIIAGGGLTGLTTAARLTENPNISV 44
>d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium
amagasakiense [TaxId: 63559]}
Length = 391
Score = 25.6 bits (55), Expect = 4.2
Identities = 10/36 (27%), Positives = 16/36 (44%), Gaps = 6/36 (16%)
Query: 142 NPEKLTG--YETI----GSTRAMLANRLSYAFNFSV 171
+P K+ G Y+ I G T +A +L+ V
Sbjct: 16 DPSKVAGKTYDYIIAGGGLTGLTVAAKLTENPKIKV 51
>d1oaoa_ e.26.1.2 (A:) Bifunctional carbon monoxide
dehydrogenase/acetyl-CoA synthase (CODH/ACS) beta (CODH)
subunit {Moorella thermoacetica [TaxId: 1525]}
Length = 673
Score = 25.2 bits (55), Expect = 4.8
Identities = 10/51 (19%), Positives = 19/51 (37%), Gaps = 5/51 (9%)
Query: 99 RMLLELTHESIMDGGFNPEEL--RGTRTG---VYIGLMTTEANDFAEGNPE 144
+ EL +++ M +P L R + T+ +D G P+
Sbjct: 209 ASISELVNQAHMGMDNDPVNLVFSAIRVALADYTGEHIATDFSDILFGTPQ 259
>d1b65a_ d.154.1.1 (A:) L-aminopeptidase D-Ala-esterase/amidase DmpA
{Ochrobactrum anthropi [TaxId: 529]}
Length = 367
Score = 24.9 bits (54), Expect = 6.1
Identities = 10/72 (13%), Positives = 24/72 (33%)
Query: 50 LANRLSYAFNFSGLYGAPSRTGKIKDIASFDAEFFGIHSKLANVMDPQLRMLLELTHESI 109
+ + N SG T + + A F + +D ++ E++
Sbjct: 269 IGRNGTPGGNNSGDIFIAFSTANQRPMQHRSAPFLDVEMVNDEPLDTVYLAAVDSVEEAV 328
Query: 110 MDGGFNPEELRG 121
++ E++ G
Sbjct: 329 VNAMIAAEDMGG 340
>d1gnla_ e.26.1.1 (A:) Hybrid cluster protein (prismane protein)
{Desulfovibrio desulfuricans [TaxId: 876]}
Length = 543
Score = 24.8 bits (54), Expect = 7.3
Identities = 10/45 (22%), Positives = 15/45 (33%), Gaps = 5/45 (11%)
Query: 105 THESIMDGGFNPEEL--RGTRTG---VYIGLMTTEANDFAEGNPE 144
+D + +L TG V + AN G+PE
Sbjct: 177 ALAKTLDDSLSVADLVALTLETGKFGVSAMALLDAANTGTYGHPE 221
>d1a0ca_ c.1.15.3 (A:) D-xylose isomerase {Clostridium
thermosulfurogenes, also known as Thermoanaerobacter
thermosulfurigenes [TaxId: 33950]}
Length = 437
Score = 24.4 bits (53), Expect = 8.4
Identities = 17/87 (19%), Positives = 28/87 (32%), Gaps = 4/87 (4%)
Query: 53 RLSYAFNFSGLYGAPSRTGKIKDIASFDAEFFGIHSKLANVMDPQLRMLLELTHESIMDG 112
R+ AF F AP +DIA + L ++ M+ + S
Sbjct: 81 RVEAAFEFFDKINAPYFCFHDRDIAPEGDTLRETNKNLDTIVA----MIKDYLKTSKTKV 136
Query: 113 GFNPEELRGTRTGVYIGLMTTEANDFA 139
+ L V+ + A+ FA
Sbjct: 137 LWGTANLFSNPRFVHGASTSCNADVFA 163
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.136 0.389
Gapped
Lambda K H
0.267 0.0483 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 637,947
Number of extensions: 28592
Number of successful extensions: 76
Number of sequences better than 10.0: 1
Number of HSP's gapped: 74
Number of HSP's successfully gapped: 15
Length of query: 172
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 93
Effective length of database: 1,322,926
Effective search space: 123032118
Effective search space used: 123032118
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.6 bits)