BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11966
(99 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2VZ8|A Chain A, Crystal Structure Of Mammalian Fatty Acid Synthase
pdb|2VZ8|B Chain B, Crystal Structure Of Mammalian Fatty Acid Synthase
pdb|2VZ9|A Chain A, Crystal Structure Of Mammalian Fatty Acid Synthase In
Complex With Nadp
pdb|2VZ9|B Chain B, Crystal Structure Of Mammalian Fatty Acid Synthase In
Complex With Nadp
Length = 2512
Score = 81.6 bits (200), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 43/86 (50%), Positives = 52/86 (60%), Gaps = 2/86 (2%)
Query: 13 RAAKSN--SPIFALAGPCCTIDTACSSTLFGLHLAVGAIERGECDHAIIGGVNLTLKPAT 70
RA +N S F GP TIDTACSS+L L A AI GEC A++GG+N+ LKP +
Sbjct: 137 RAMMANRLSFFFDFKGPSITIDTACSSSLLALQSAYQAIRGGECSAAVVGGLNVLLKPNS 196
Query: 71 SLMYHKYNMLSPTGTISPFDASGVGH 96
SL + K MLS GT FDA G G+
Sbjct: 197 SLQFMKLGMLSQDGTCRSFDAEGTGY 222
>pdb|3HHD|A Chain A, Structure Of The Human Fatty Acid Synthase Ks-Mat Didomain
As A Framework For Inhibitor Design.
pdb|3HHD|B Chain B, Structure Of The Human Fatty Acid Synthase Ks-Mat Didomain
As A Framework For Inhibitor Design.
pdb|3HHD|C Chain C, Structure Of The Human Fatty Acid Synthase Ks-Mat Didomain
As A Framework For Inhibitor Design.
pdb|3HHD|D Chain D, Structure Of The Human Fatty Acid Synthase Ks-Mat Didomain
As A Framework For Inhibitor Design
Length = 965
Score = 76.3 bits (186), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 40/86 (46%), Positives = 52/86 (60%), Gaps = 2/86 (2%)
Query: 13 RAAKSN--SPIFALAGPCCTIDTACSSTLFGLHLAVGAIERGECDHAIIGGVNLTLKPAT 70
RA +N S F GP +DTACSS+L L A AI G+C AI+GG+N+ LKP T
Sbjct: 139 RAMMANRLSFFFDFRGPSIALDTACSSSLMALQNAYQAIHSGQCPAAIVGGINVLLKPNT 198
Query: 71 SLMYHKYNMLSPTGTISPFDASGVGH 96
S+ + + MLSP GT FD +G G+
Sbjct: 199 SVQFLRLGMLSPEGTCKAFDTAGNGY 224
>pdb|2QO3|A Chain A, Crystal Structure Of [ks3][at3] Didomain From Module 3 Of
6- Deoxyerthronolide B Synthase
pdb|2QO3|B Chain B, Crystal Structure Of [ks3][at3] Didomain From Module 3 Of
6- Deoxyerthronolide B Synthase
Length = 915
Score = 54.7 bits (130), Expect = 1e-08, Method: Composition-based stats.
Identities = 31/89 (34%), Positives = 46/89 (51%), Gaps = 2/89 (2%)
Query: 7 VAPSTPRAAKSNSPIFALAGPCCTIDTACSSTLFGLHLAVGAIERGECDHAIIGGVNLTL 66
VAP+ A+ S L GP ++DTACSS+L LHLAV ++ +GE A++GG +
Sbjct: 151 VAPAV--ASGRISYTMGLEGPSISVDTACSSSLVALHLAVESLRKGESSMAVVGGAAVMA 208
Query: 67 KPATSLMYHKYNMLSPTGTISPFDASGVG 95
P + + + L+ G F A G
Sbjct: 209 TPGVFVDFSRQRALAADGRSKAFGAGADG 237
>pdb|2HG4|A Chain A, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs.
pdb|2HG4|B Chain B, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs.
pdb|2HG4|C Chain C, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs.
pdb|2HG4|D Chain D, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs.
pdb|2HG4|E Chain E, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs.
pdb|2HG4|F Chain F, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs
Length = 917
Score = 53.5 bits (127), Expect = 3e-08, Method: Composition-based stats.
Identities = 28/74 (37%), Positives = 36/74 (48%)
Query: 22 FALAGPCCTIDTACSSTLFGLHLAVGAIERGECDHAIIGGVNLTLKPATSLMYHKYNMLS 81
L GP T+DTACSS L LHLA ++ R EC A+ GGV + P + L+
Sbjct: 186 LGLEGPAXTVDTACSSGLTALHLAXESLRRDECGLALAGGVTVXSSPGAFTEFRSQGGLA 245
Query: 82 PTGTISPFDASGVG 95
G PF + G
Sbjct: 246 ADGRCKPFSKAADG 259
>pdb|2ALM|A Chain A, Crystal Structure Analysis Of A Mutant Beta-Ketoacyl-[acyl
Carrier Protein] Synthase Ii From Streptococcus
Pneumoniae
Length = 431
Score = 34.3 bits (77), Expect = 0.018, Method: Composition-based stats.
Identities = 26/84 (30%), Positives = 38/84 (45%), Gaps = 5/84 (5%)
Query: 12 PRAAKSNSPI-FALAGPCCTIDTACSSTLFGLHLAVGAIERGECDHAIIGGVNLTLKPAT 70
P A N + F G C +I+TACSS+ + A +I+ G D ++GG ++ P
Sbjct: 160 PNMASGNVAMRFGANGVCKSINTACSSSNDAIGDAFRSIKFGFQDVMLVGGTEASITPFA 219
Query: 71 SLMYHKYNMLS----PTGTISPFD 90
+ LS PT PFD
Sbjct: 220 IAGFQALTALSTTEDPTRASIPFD 243
>pdb|1OX0|A Chain A, The Crystal Structure Of Beta-Ketoacyl-[acyl Carrier
Protein] Synthase Ii From Streptococcus Pneumoniae
pdb|1OXH|A Chain A, The Crystal Structure Of Beta-Ketoacyl-[acyl Carrier
Protein] Synthase Ii From Streptococcus Pneumoniae,
Triclinic Form
pdb|1OXH|B Chain B, The Crystal Structure Of Beta-Ketoacyl-[acyl Carrier
Protein] Synthase Ii From Streptococcus Pneumoniae,
Triclinic Form
pdb|1OXH|C Chain C, The Crystal Structure Of Beta-Ketoacyl-[acyl Carrier
Protein] Synthase Ii From Streptococcus Pneumoniae,
Triclinic Form
pdb|1OXH|D Chain D, The Crystal Structure Of Beta-Ketoacyl-[acyl Carrier
Protein] Synthase Ii From Streptococcus Pneumoniae,
Triclinic Form
Length = 430
Score = 34.3 bits (77), Expect = 0.019, Method: Composition-based stats.
Identities = 26/84 (30%), Positives = 38/84 (45%), Gaps = 5/84 (5%)
Query: 12 PRAAKSNSPI-FALAGPCCTIDTACSSTLFGLHLAVGAIERGECDHAIIGGVNLTLKPAT 70
P A N + F G C +I+TACSS+ + A +I+ G D ++GG ++ P
Sbjct: 159 PNMASGNVAMRFGANGVCKSINTACSSSNDAIGDAFRSIKFGFQDVMLVGGTEASITPFA 218
Query: 71 SLMYHKYNMLS----PTGTISPFD 90
+ LS PT PFD
Sbjct: 219 IAGFQALTALSTTEDPTRASIPFD 242
>pdb|2RJT|A Chain A, Crystal Structure Analysis Of A Surface Entropy Reduction
Mutant Of S. Pneumoniae Fabf
pdb|2RJT|D Chain D, Crystal Structure Analysis Of A Surface Entropy Reduction
Mutant Of S. Pneumoniae Fabf
pdb|2RJT|C Chain C, Crystal Structure Analysis Of A Surface Entropy Reduction
Mutant Of S. Pneumoniae Fabf
pdb|2RJT|B Chain B, Crystal Structure Analysis Of A Surface Entropy Reduction
Mutant Of S. Pneumoniae Fabf
Length = 428
Score = 33.1 bits (74), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 38/84 (45%), Gaps = 5/84 (5%)
Query: 12 PRAAKSNSPI-FALAGPCCTIDTACSSTLFGLHLAVGAIERGECDHAIIGGVNLTLKPAT 70
P A N + F G C +I+TACSS+ + A +I+ G D ++GG ++ P
Sbjct: 159 PNMASGNVAMRFGANGVCKSINTACSSSNDAIGDAFRSIKFGFQDVMLVGGTEASITPFA 218
Query: 71 SLMYHKYNMLS----PTGTISPFD 90
+ LS PT PFD
Sbjct: 219 IAGFQALTALSTTEDPTRASIPFD 242
>pdb|1J3N|A Chain A, Crystal Structure Of 3-Oxoacyl-(Acyl-Carrier Protein)
Synthase Ii From Thermus Thermophilus Hb8
pdb|1J3N|B Chain B, Crystal Structure Of 3-Oxoacyl-(Acyl-Carrier Protein)
Synthase Ii From Thermus Thermophilus Hb8
Length = 408
Score = 30.8 bits (68), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 23/47 (48%)
Query: 22 FALAGPCCTIDTACSSTLFGLHLAVGAIERGECDHAIIGGVNLTLKP 68
+ GP T+ TAC++ L A+ I+ GE D + GG + P
Sbjct: 148 YGFTGPSSTVVTACATGADALGSALRMIQLGEADLVLAGGTEAAITP 194
>pdb|3S21|A Chain A, Crystal Structure Of Cerulenin Bound Xanthomonas Campestri
Olea (Co- Crystal)
pdb|3S23|A Chain A, Crystal Structure Of Cerulenin Bound Xanthomonas Campestri
Olea (Co- Crystal) Xe Derivative
Length = 345
Score = 30.4 bits (67), Expect = 0.28, Method: Composition-based stats.
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 5/53 (9%)
Query: 9 PSTPRAAKSNSPIFALAGPCCTIDTA--CSSTLFGLHLAVGAIERGECDHAII 59
PST N ++ C T D A C + + G+ +A +ERGE D+A++
Sbjct: 105 PSTASIVSGN---LGVSDHCMTFDVANACLAFINGMDIAARMLERGEIDYALV 154
>pdb|3ROW|A Chain A, Crystal Structure Of Xanthomonas Campestri Olea
pdb|3ROW|B Chain B, Crystal Structure Of Xanthomonas Campestri Olea
pdb|3S1Z|A Chain A, Crystal Structure Of Acetamide Bound Xanthomonas Campestri
Olea
pdb|3S1Z|B Chain B, Crystal Structure Of Acetamide Bound Xanthomonas Campestri
Olea
pdb|3S20|A Chain A, Crystal Structure Of Cerulenin Bound Xanthomonas Campestri
Olea (Soak)
pdb|3S20|B Chain B, Crystal Structure Of Cerulenin Bound Xanthomonas Campestri
Olea (Soak)
Length = 344
Score = 30.4 bits (67), Expect = 0.28, Method: Composition-based stats.
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 5/53 (9%)
Query: 9 PSTPRAAKSNSPIFALAGPCCTIDTA--CSSTLFGLHLAVGAIERGECDHAII 59
PST N ++ C T D A C + + G+ +A +ERGE D+A++
Sbjct: 104 PSTASIVSGN---LGVSDHCMTFDVANACLAFINGMDIAARMLERGEIDYALV 153
>pdb|3FK5|A Chain A, Crystal Structure Of 3-Oxoacyl-(Acyl Carrier Protein)
Synthase Iii, Fabh (Xoo4209) From Xanthomonas Oryzae Pv.
Oryzae Kacc10331
Length = 338
Score = 30.0 bits (66), Expect = 0.30, Method: Composition-based stats.
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 5/53 (9%)
Query: 9 PSTPRAAKSNSPIFALAGPCCTIDTA--CSSTLFGLHLAVGAIERGECDHAII 59
PST N + C T D A C + + G+ +A +ERGE D+A++
Sbjct: 98 PSTASIVSGN---LGVGDHCVTFDVANACLAFINGMDIAARMLERGEIDYALV 147
>pdb|1B3N|A Chain A, Beta-Ketoacyl Carrier Protein Synthase As A Drug Target,
Implications From The Crystal Structure Of A Complex
With The Inhibitor Cerulenin.
pdb|1KAS|A Chain A, Beta-Ketoacyl-Acp Synthase Ii From Escherichia Coli
Length = 412
Score = 28.5 bits (62), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 23/48 (47%)
Query: 21 IFALAGPCCTIDTACSSTLFGLHLAVGAIERGECDHAIIGGVNLTLKP 68
++ L GP +I TAC+S + + A I G+ D + GG P
Sbjct: 149 MYGLRGPSISIATACTSGVHNIGHAARIIAYGDADVMVAGGAEKASTP 196
>pdb|2GFY|A Chain A, Structure Of E. Coli Fabf(K335a) Mutant With Covalently
Linked Dodecanoic Acid
Length = 427
Score = 28.5 bits (62), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 23/48 (47%)
Query: 21 IFALAGPCCTIDTACSSTLFGLHLAVGAIERGECDHAIIGGVNLTLKP 68
++ L GP +I TAC+S + + A I G+ D + GG P
Sbjct: 164 MYGLRGPSISIATACTSGVHNIGHAARIIAYGDADVMVAGGAEKASTP 211
>pdb|2GFW|A Chain A, Structure Of Wild Type E. Coli Fabf (Kasii)
Length = 427
Score = 28.5 bits (62), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 23/48 (47%)
Query: 21 IFALAGPCCTIDTACSSTLFGLHLAVGAIERGECDHAIIGGVNLTLKP 68
++ L GP +I TAC+S + + A I G+ D + GG P
Sbjct: 164 MYGLRGPSISIATACTSGVHNIGHAARIIAYGDADVMVAGGAEKASTP 211
>pdb|4E1L|A Chain A, Crystal Structure Of Acetoacetyl-Coa Thiolase (Thla2) From
Clostridium Difficile
pdb|4E1L|B Chain B, Crystal Structure Of Acetoacetyl-Coa Thiolase (Thla2) From
Clostridium Difficile
pdb|4E1L|C Chain C, Crystal Structure Of Acetoacetyl-Coa Thiolase (Thla2) From
Clostridium Difficile
pdb|4E1L|D Chain D, Crystal Structure Of Acetoacetyl-Coa Thiolase (Thla2) From
Clostridium Difficile
Length = 395
Score = 28.5 bits (62), Expect = 1.0, Method: Composition-based stats.
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 27 PCCTIDTACSSTLFGLHLAVGAIERGECDHAIIGGV-NLTLKP 68
P T++ C S L + LA +I GE D I GG N++ P
Sbjct: 83 PSYTVNKLCGSGLKSVQLAAQSITSGENDVVIAGGTENMSQAP 125
>pdb|1TQY|A Chain A, The Actinorhodin KetosynthaseCHAIN LENGTH FACTOR
pdb|1TQY|C Chain C, The Actinorhodin KetosynthaseCHAIN LENGTH FACTOR
pdb|1TQY|E Chain E, The Actinorhodin KetosynthaseCHAIN LENGTH FACTOR
pdb|1TQY|G Chain G, The Actinorhodin KetosynthaseCHAIN LENGTH FACTOR
Length = 424
Score = 28.5 bits (62), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 20/43 (46%)
Query: 26 GPCCTIDTACSSTLFGLHLAVGAIERGECDHAIIGGVNLTLKP 68
GP + T C+S L + AV AIE G D G + + P
Sbjct: 160 GPVTMVSTGCTSGLDSVGNAVRAIEEGSADVMFAGAADTPITP 202
>pdb|4DD5|A Chain A, Biosynthetic Thiolase (Thla1) From Clostridium Difficile
Length = 396
Score = 28.1 bits (61), Expect = 1.3, Method: Composition-based stats.
Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 27 PCCTIDTACSSTLFGLHLAVGAIERGECDHAIIGGV-NLTLKP 68
P TI+ C S L + +A I G+ D ++GG N+++ P
Sbjct: 85 PAMTINIVCGSGLRSVSMASQLIALGDADIMLVGGAENMSMSP 127
>pdb|1WDK|C Chain C, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form I (Native2)
pdb|1WDK|D Chain D, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form I (Native2)
pdb|1WDL|C Chain C, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form Ii (Native4)
pdb|1WDL|D Chain D, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form Ii (Native4)
pdb|1WDM|C Chain C, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form I (Native3)
pdb|1WDM|D Chain D, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form I (Native3)
pdb|2D3T|C Chain C, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form V
pdb|2D3T|D Chain D, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form V
Length = 390
Score = 26.9 bits (58), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 30 TIDTACSSTLFGLHLAVGAIERGECDHAIIGGVN 63
T+ C S++ LH A AI G D ++GGV
Sbjct: 89 TVSRLCGSSMSALHTAAQAIMTGNGDVFVVGGVE 122
>pdb|3H76|A Chain A, Crystal Structure Of Pqsd, A Key Enzyme In Pseudomonas
Aeruginosa Quinolone Signal Biosynthesis Pathway
pdb|3H76|B Chain B, Crystal Structure Of Pqsd, A Key Enzyme In Pseudomonas
Aeruginosa Quinolone Signal Biosynthesis Pathway
Length = 359
Score = 26.2 bits (56), Expect = 5.2, Method: Composition-based stats.
Identities = 12/33 (36%), Positives = 16/33 (48%)
Query: 27 PCCTIDTACSSTLFGLHLAVGAIERGECDHAII 59
P I CS L+GL +A G I G H ++
Sbjct: 127 PVLDIRAQCSGLLYGLQMARGQILAGLARHVLV 159
>pdb|2IB7|A Chain A, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB7|B Chain B, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB7|C Chain C, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB7|D Chain D, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB8|A Chain A, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB8|B Chain B, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB8|C Chain C, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB8|D Chain D, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB9|A Chain A, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB9|B Chain B, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB9|C Chain C, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB9|D Chain D, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
Length = 395
Score = 25.8 bits (55), Expect = 5.9, Method: Composition-based stats.
Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
Query: 8 APSTPRAAKSNSPIFALAGPCCTIDTACSSTLFGLHLAVGAIERGECDHAIIGGV 62
AP+ + PI + PC TI+ C+S + + +A ++ G D + GG+
Sbjct: 70 APTRQAVLGAGLPI---STPCTTINKVCASGMKAIMMASQSLMCGHQDVMVAGGM 121
>pdb|3GOA|A Chain A, Crystal Structure Of The Salmonella Typhimurium Fada 3-
Ketoacyl-Coa Thiolase
pdb|3GOA|B Chain B, Crystal Structure Of The Salmonella Typhimurium Fada 3-
Ketoacyl-Coa Thiolase
Length = 387
Score = 25.8 bits (55), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 18/37 (48%)
Query: 27 PCCTIDTACSSTLFGLHLAVGAIERGECDHAIIGGVN 63
P T++ C S+ LH A I G+ ++GGV
Sbjct: 83 PAVTVNRLCGSSXQALHDAARXIXTGDAQVCLVGGVE 119
>pdb|2GP6|A Chain A, X-Ray Crystal Structure Of Mycobacterium Tuberculosis
Beta- Ketoacyl Acyl Carrier Protein Synthase Ii (Mtkasb)
pdb|2GP6|B Chain B, X-Ray Crystal Structure Of Mycobacterium Tuberculosis
Beta- Ketoacyl Acyl Carrier Protein Synthase Ii (Mtkasb)
Length = 434
Score = 25.4 bits (54), Expect = 7.7, Method: Composition-based stats.
Identities = 20/64 (31%), Positives = 26/64 (40%), Gaps = 6/64 (9%)
Query: 33 TACSSTLFGLHLAVGAIERGECDHAIIGGVNLTLKP------ATSLMYHKYNMLSPTGTI 86
+AC+S + A I GE D AI GGV ++ A + N P G
Sbjct: 185 SACASGAEAIARAWQQIVLGEADAAICGGVETRIEAVPIAGFAQMRIVMSTNNDDPAGAC 244
Query: 87 SPFD 90
PFD
Sbjct: 245 RPFD 248
>pdb|3HNZ|A Chain A, Structure Of E. Coli Fabf(C163a) In Complex With
Platensimycin
pdb|3HO2|A Chain A, Structure Of E.Coli Fabf(C163a) In Complex With Platencin
pdb|3HO9|A Chain A, Structure Of E.Coli Fabf(C163a) In Complex With Platencin
A1
pdb|3I8P|A Chain A, Crystal Structure Of E. Coli Fabf(C163a) In Complex With
Platensimycin A1
Length = 427
Score = 25.4 bits (54), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 22/48 (45%)
Query: 21 IFALAGPCCTIDTACSSTLFGLHLAVGAIERGECDHAIIGGVNLTLKP 68
++ L GP +I TA +S + + A I G+ D + GG P
Sbjct: 164 MYGLRGPSISIATAATSGVHNIGHAARIIAYGDADVMVAGGAEKASTP 211
>pdb|2IWY|A Chain A, Human Mitochondrial Beta-ketoacyl Acp Synthase
pdb|2IWY|B Chain B, Human Mitochondrial Beta-ketoacyl Acp Synthase
pdb|2IWZ|A Chain A, Human Mitochondrial Beta-Ketoacyl Acp Synthase Complexed
With Hexanoic Acid
pdb|2IWZ|B Chain B, Human Mitochondrial Beta-Ketoacyl Acp Synthase Complexed
With Hexanoic Acid
Length = 438
Score = 25.4 bits (54), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 30/68 (44%)
Query: 14 AAKSNSPIFALAGPCCTIDTACSSTLFGLHLAVGAIERGECDHAIIGGVNLTLKPATSLM 73
AA S + L GP + TAC++ + + I G+ D + GG + + P +
Sbjct: 167 AAGQVSIRYKLKGPNHAVSTACTTGAHAVGDSFRFIAHGDADVMVAGGTDSCISPLSLAG 226
Query: 74 YHKYNMLS 81
+ + LS
Sbjct: 227 FSRARALS 234
>pdb|2GFH|A Chain A, Crystal Structure Of A N-acetylneuraminic Acid Phosphatase
(nanp) From Mus Musculus At 1.90 A Resolution
Length = 260
Score = 25.0 bits (53), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 4/41 (9%)
Query: 55 DHAIIGGVNLTLKPATSLMYHKYNMLSPTGTISPFDASGVG 95
D +IGG KPA S+ YH ++L + P D VG
Sbjct: 164 DAIVIGGEQKEEKPAPSIFYHCCDLLG----VQPGDCVMVG 200
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.134 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,772,859
Number of Sequences: 62578
Number of extensions: 89094
Number of successful extensions: 194
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 167
Number of HSP's gapped (non-prelim): 30
length of query: 99
length of database: 14,973,337
effective HSP length: 65
effective length of query: 34
effective length of database: 10,905,767
effective search space: 370796078
effective search space used: 370796078
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)