Query psy11966
Match_columns 99
No_of_seqs 123 out of 1143
Neff 8.6
Searched_HMMs 46136
Date Fri Aug 16 23:31:10 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11966.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11966hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK14691 3-oxoacyl-(acyl carri 99.9 2.1E-26 4.5E-31 164.1 8.8 99 1-99 57-161 (342)
2 KOG1394|consensus 99.9 2.4E-26 5.2E-31 162.2 3.6 99 1-99 153-256 (440)
3 PRK08722 3-oxoacyl-(acyl carri 99.9 7.4E-25 1.6E-29 159.3 10.6 99 1-99 130-233 (414)
4 PF00109 ketoacyl-synt: Beta-k 99.9 5.3E-25 1.1E-29 149.9 7.6 94 6-99 147-240 (254)
5 TIGR02813 omega_3_PfaA polyket 99.9 8.1E-25 1.8E-29 182.0 10.0 97 3-99 174-270 (2582)
6 COG0304 FabB 3-oxoacyl-(acyl-c 99.9 9.5E-25 2.1E-29 158.4 8.0 99 1-99 128-231 (412)
7 PRK07967 3-oxoacyl-(acyl carri 99.9 2.9E-24 6.3E-29 155.9 9.6 98 1-99 128-231 (406)
8 PRK05952 3-oxoacyl-(acyl carri 99.9 7.5E-24 1.6E-28 152.8 9.2 97 2-99 113-209 (381)
9 PRK07910 3-oxoacyl-(acyl carri 99.9 7.8E-24 1.7E-28 154.1 9.3 98 2-99 138-241 (418)
10 PLN02787 3-oxoacyl-[acyl-carri 99.9 7.4E-24 1.6E-28 158.1 8.6 98 2-99 258-360 (540)
11 cd00832 CLF Chain-length facto 99.9 2.8E-23 6E-28 150.4 9.7 97 2-99 128-228 (399)
12 PRK06333 3-oxoacyl-(acyl carri 99.9 2.9E-23 6.2E-28 150.9 9.4 98 2-99 140-243 (424)
13 COG3321 Polyketide synthase mo 99.9 8.7E-24 1.9E-28 166.9 5.9 98 2-99 141-238 (1061)
14 PTZ00050 3-oxoacyl-acyl carrie 99.9 5.5E-23 1.2E-27 149.7 8.7 98 2-99 135-238 (421)
15 PRK08439 3-oxoacyl-(acyl carri 99.9 9.4E-23 2E-27 147.9 9.9 99 1-99 128-231 (406)
16 PRK09116 3-oxoacyl-(acyl carri 99.9 9.2E-23 2E-27 148.0 8.8 97 2-99 131-232 (405)
17 PLN02836 3-oxoacyl-[acyl-carri 99.9 1.6E-22 3.5E-27 147.9 8.6 99 1-99 150-254 (437)
18 PRK06519 3-oxoacyl-(acyl carri 99.9 6.8E-22 1.5E-26 143.3 9.6 98 1-99 141-242 (398)
19 cd00828 elong_cond_enzymes "el 99.9 3.5E-21 7.6E-26 139.0 9.8 97 2-99 126-230 (407)
20 PRK07314 3-oxoacyl-(acyl carri 99.9 3.9E-21 8.5E-26 139.1 9.5 98 2-99 129-231 (411)
21 PRK07103 polyketide beta-ketoa 99.9 4.1E-21 8.9E-26 139.5 9.3 98 2-99 134-238 (410)
22 PRK06501 3-oxoacyl-(acyl carri 99.8 1.2E-20 2.5E-25 137.7 10.0 93 7-99 147-244 (425)
23 TIGR03150 fabF beta-ketoacyl-a 99.8 2.1E-20 4.5E-25 134.8 9.7 98 2-99 128-230 (407)
24 smart00825 PKS_KS Beta-ketoacy 99.8 1.1E-19 2.4E-24 131.8 9.5 98 2-99 137-234 (424)
25 cd00834 KAS_I_II Beta-ketoacyl 99.8 1.2E-19 2.5E-24 130.8 9.3 98 2-99 128-230 (406)
26 cd00833 PKS polyketide synthas 99.8 2.3E-19 5E-24 129.6 10.3 98 2-99 137-234 (421)
27 PRK09185 3-oxoacyl-(acyl carri 99.8 7.2E-19 1.6E-23 127.2 9.4 95 3-99 128-222 (392)
28 KOG1202|consensus 99.8 7.9E-20 1.7E-24 143.4 2.3 98 2-99 137-234 (2376)
29 cd00825 decarbox_cond_enzymes 99.7 8.3E-16 1.8E-20 107.9 9.9 98 2-99 63-160 (332)
30 PRK06147 3-oxoacyl-(acyl carri 99.3 3.4E-11 7.5E-16 86.2 9.0 80 13-99 109-190 (348)
31 PRK13359 beta-ketoadipyl CoA t 98.9 3.1E-09 6.8E-14 77.5 6.5 58 12-69 65-124 (400)
32 PF00108 Thiolase_N: Thiolase, 98.9 3.8E-09 8.2E-14 73.3 6.5 59 12-70 63-123 (264)
33 PRK07108 acetyl-CoA acetyltran 98.9 5.2E-09 1.1E-13 76.2 6.8 56 13-68 66-123 (392)
34 TIGR02430 pcaF beta-ketoadipyl 98.9 6.5E-09 1.4E-13 75.9 6.2 57 13-69 65-123 (400)
35 PRK09050 beta-ketoadipyl CoA t 98.9 6.5E-09 1.4E-13 75.9 6.2 56 14-69 67-124 (401)
36 PRK08963 fadI 3-ketoacyl-CoA t 98.9 7.2E-09 1.6E-13 76.2 6.3 56 14-69 68-125 (428)
37 cd00327 cond_enzymes Condensin 98.8 1.1E-08 2.3E-13 69.5 6.4 54 11-64 43-97 (254)
38 PRK07850 acetyl-CoA acetyltran 98.8 9.4E-09 2E-13 74.7 6.3 55 15-69 67-123 (387)
39 COG0183 PaaJ Acetyl-CoA acetyl 98.8 1.6E-08 3.4E-13 73.7 6.6 60 11-70 66-127 (392)
40 PRK06816 3-oxoacyl-(acyl carri 98.8 3.1E-08 6.8E-13 71.6 7.9 85 15-99 103-191 (378)
41 TIGR02446 FadI fatty oxidation 98.8 1.2E-08 2.6E-13 75.1 5.4 54 14-67 70-125 (430)
42 PRK06633 acetyl-CoA acetyltran 98.8 2.1E-08 4.6E-13 73.1 6.0 55 13-67 65-121 (392)
43 PRK06690 acetyl-CoA acetyltran 98.7 2.5E-08 5.5E-13 72.0 6.3 52 17-68 62-115 (361)
44 PRK08131 acetyl-CoA acetyltran 98.7 3.8E-08 8.3E-13 71.9 6.6 56 14-69 66-123 (401)
45 PRK07661 acetyl-CoA acetyltran 98.7 3.3E-08 7.1E-13 72.0 6.1 55 14-68 67-123 (391)
46 PRK06504 acetyl-CoA acetyltran 98.7 2.4E-08 5.2E-13 72.7 5.0 44 25-68 79-122 (390)
47 PRK08947 fadA 3-ketoacyl-CoA t 98.7 4.1E-08 8.8E-13 71.4 6.0 55 14-68 68-124 (387)
48 PTZ00455 3-ketoacyl-CoA thiola 98.7 3.5E-08 7.6E-13 72.8 5.2 49 20-68 104-153 (438)
49 PRK06025 acetyl-CoA acetyltran 98.7 5.6E-08 1.2E-12 71.4 6.1 58 13-70 68-127 (417)
50 PRK08256 lipid-transfer protei 98.6 5.9E-08 1.3E-12 70.5 5.7 50 17-66 61-111 (391)
51 PRK09268 acetyl-CoA acetyltran 98.6 7.3E-08 1.6E-12 70.9 6.2 55 14-68 70-126 (427)
52 PRK06366 acetyl-CoA acetyltran 98.6 7.4E-08 1.6E-12 70.0 6.2 55 13-67 64-120 (388)
53 PRK06157 acetyl-CoA acetyltran 98.6 9.7E-08 2.1E-12 69.6 6.7 53 15-67 67-120 (398)
54 PRK05656 acetyl-CoA acetyltran 98.6 9.7E-08 2.1E-12 69.5 6.3 54 14-67 65-120 (393)
55 PRK07851 acetyl-CoA acetyltran 98.6 9.6E-08 2.1E-12 69.8 6.1 54 13-66 67-121 (406)
56 TIGR02445 fadA fatty oxidation 98.6 8.2E-08 1.8E-12 69.8 5.7 55 14-68 66-122 (385)
57 PRK06064 acetyl-CoA acetyltran 98.6 1E-07 2.2E-12 69.1 6.2 53 14-66 63-116 (389)
58 PRK06205 acetyl-CoA acetyltran 98.6 1.5E-07 3.3E-12 68.7 6.6 54 14-67 65-120 (404)
59 PRK08242 acetyl-CoA acetyltran 98.6 1.5E-07 3.4E-12 68.8 6.5 57 13-69 67-125 (402)
60 PRK09352 3-oxoacyl-(acyl carri 98.6 1.7E-07 3.8E-12 65.8 6.1 53 13-65 90-143 (319)
61 PRK06059 lipid-transfer protei 98.6 2.2E-07 4.8E-12 67.7 6.6 54 13-66 62-116 (399)
62 PRK09051 beta-ketothiolase; Pr 98.5 2.5E-07 5.5E-12 67.5 6.5 55 14-68 67-123 (394)
63 PRK08235 acetyl-CoA acetyltran 98.5 2.3E-07 5E-12 67.6 6.1 56 14-69 65-122 (393)
64 PRK12578 acetyl-CoA acetyltran 98.5 3.3E-07 7.1E-12 66.5 6.5 54 14-67 60-114 (385)
65 PRK09052 acetyl-CoA acetyltran 98.5 3.7E-07 8.1E-12 66.7 6.6 56 14-69 71-129 (399)
66 PRK06365 acetyl-CoA acetyltran 98.5 3.6E-07 7.9E-12 67.3 6.5 52 17-68 80-132 (430)
67 PRK08170 acetyl-CoA acetyltran 98.5 3.5E-07 7.5E-12 67.3 6.3 55 13-67 65-121 (426)
68 PRK07515 3-oxoacyl-(acyl carri 98.5 3.6E-07 7.9E-12 65.8 6.3 53 14-66 134-186 (372)
69 PLN02287 3-ketoacyl-CoA thiola 98.5 2.8E-07 6E-12 68.4 5.7 52 17-68 114-167 (452)
70 cd00826 nondecarbox_cond_enzym 98.5 4.1E-07 8.8E-12 66.3 6.1 50 18-67 67-117 (393)
71 cd00829 SCP-x_thiolase Thiolas 98.5 6E-07 1.3E-11 64.5 6.8 57 12-68 53-110 (375)
72 PRK06954 acetyl-CoA acetyltran 98.5 2.7E-07 5.8E-12 67.3 4.8 42 26-67 84-125 (397)
73 PLN02644 acetyl-CoA C-acetyltr 98.4 5.7E-07 1.2E-11 65.5 6.3 54 14-67 64-119 (394)
74 cd00751 thiolase Thiolase are 98.4 4.7E-07 1E-11 65.7 5.8 54 13-66 60-115 (386)
75 PRK07801 acetyl-CoA acetyltran 98.4 5.5E-07 1.2E-11 65.3 4.6 47 21-67 73-121 (382)
76 TIGR00747 fabH 3-oxoacyl-(acyl 98.4 1E-06 2.2E-11 61.9 5.9 54 13-66 89-143 (318)
77 PRK07516 acetyl-CoA acetyltran 98.3 1.7E-06 3.6E-11 62.9 6.2 51 18-68 67-118 (389)
78 PRK09258 3-oxoacyl-(acyl carri 98.3 3.5E-06 7.5E-11 59.8 7.4 54 12-65 98-153 (338)
79 PRK06445 acetyl-CoA acetyltran 98.3 1.5E-06 3.1E-11 63.4 5.1 49 19-67 79-127 (394)
80 KOG1390|consensus 98.3 1.8E-06 3.9E-11 61.4 5.3 59 11-69 66-126 (396)
81 PRK06065 acetyl-CoA acetyltran 98.3 2.5E-06 5.4E-11 62.3 6.2 52 14-65 69-121 (392)
82 PRK05790 putative acyltransfer 98.3 3E-06 6.4E-11 61.6 6.6 51 17-67 68-120 (393)
83 TIGR01930 AcCoA-C-Actrans acet 98.3 2.8E-06 6.2E-11 61.7 6.2 53 14-66 60-114 (386)
84 KOG1406|consensus 98.2 1.6E-06 3.5E-11 60.6 3.9 54 14-67 65-119 (408)
85 PRK07204 3-oxoacyl-(acyl carri 98.2 4.4E-06 9.6E-11 59.1 6.2 53 13-65 90-145 (329)
86 cd00827 init_cond_enzymes "ini 98.2 2.9E-06 6.3E-11 59.6 5.2 57 13-69 86-143 (324)
87 TIGR02845 spore_V_AD stage V s 98.2 4.6E-06 1E-10 59.5 6.1 56 13-70 85-140 (327)
88 cd00830 KAS_III Ketoacyl-acyl 98.2 5.1E-06 1.1E-10 58.2 6.3 55 12-66 87-142 (320)
89 CHL00203 fabH 3-oxoacyl-acyl-c 98.2 5.6E-06 1.2E-10 58.6 6.0 53 14-66 89-142 (326)
90 PRK12879 3-oxoacyl-(acyl carri 98.2 9.1E-06 2E-10 57.2 6.9 54 12-65 90-144 (325)
91 PRK08313 acetyl-CoA acetyltran 98.1 6.1E-06 1.3E-10 60.1 5.9 53 14-66 64-117 (386)
92 PRK06289 acetyl-CoA acetyltran 98.1 4.9E-06 1.1E-10 60.8 5.4 47 22-68 76-123 (403)
93 PRK08304 stage V sporulation p 98.1 9.7E-06 2.1E-10 58.0 5.6 55 13-69 91-145 (337)
94 PRK08142 acetyl-CoA acetyltran 98.0 1.8E-05 4E-10 57.7 6.6 51 16-66 62-113 (388)
95 PRK06158 thiolase; Provisional 98.0 2.1E-05 4.5E-10 57.2 6.5 51 14-64 63-115 (384)
96 PLN02326 3-oxoacyl-[acyl-carri 98.0 2.3E-05 4.9E-10 56.9 6.1 52 14-65 134-186 (379)
97 PRK07855 lipid-transfer protei 97.8 7.5E-05 1.6E-09 54.4 6.5 47 16-62 60-108 (386)
98 PRK12404 stage V sporulation p 97.8 6.8E-05 1.5E-09 53.6 5.9 58 12-71 88-145 (334)
99 COG0332 FabH 3-oxoacyl-[acyl-c 97.7 9.2E-05 2E-09 53.0 5.8 54 12-65 89-143 (323)
100 PRK06840 hypothetical protein; 97.7 0.00011 2.4E-09 52.3 6.1 52 14-65 93-146 (339)
101 KOG1389|consensus 97.7 5.2E-05 1.1E-09 54.1 4.2 56 13-68 98-156 (435)
102 PRK04262 hypothetical protein; 97.7 8.3E-05 1.8E-09 53.2 5.3 51 14-64 90-142 (347)
103 PF13723 Ketoacyl-synt_2: Beta 97.7 0.00019 4.1E-09 48.8 6.5 68 1-69 80-147 (218)
104 TIGR01835 HMG-CoA-S_prok 3-hyd 97.6 0.00022 4.8E-09 51.8 6.1 52 13-64 85-138 (379)
105 TIGR00748 HMG_CoA_syn_Arc hydr 97.6 0.00018 4E-09 51.6 5.3 52 14-65 89-142 (345)
106 PRK08257 acetyl-CoA acetyltran 97.5 0.00042 9.2E-09 52.2 6.7 55 13-67 66-121 (498)
107 PF08545 ACP_syn_III: 3-Oxoacy 97.4 0.00032 6.9E-09 40.2 4.3 38 30-67 2-39 (80)
108 PRK06066 acetyl-CoA acetyltran 97.4 0.00036 7.9E-09 51.0 5.5 48 17-67 69-117 (385)
109 KOG1392|consensus 97.4 5.6E-05 1.2E-09 53.6 1.0 60 13-72 104-165 (465)
110 cd00831 CHS_like Chalcone and 97.3 0.00064 1.4E-08 48.8 5.7 56 11-66 120-178 (361)
111 PLN02932 3-ketoacyl-CoA syntha 97.3 0.0008 1.7E-08 50.5 6.0 56 11-66 183-241 (478)
112 PLN02192 3-ketoacyl-CoA syntha 97.2 0.00084 1.8E-08 50.8 5.8 55 12-66 212-269 (511)
113 PLN03168 chalcone synthase; Pr 97.2 0.0014 3.1E-08 47.9 6.7 55 12-66 137-194 (389)
114 PRK12880 3-oxoacyl-(acyl carri 97.2 0.0012 2.5E-08 47.7 6.1 55 10-65 95-151 (353)
115 KOG1391|consensus 97.2 0.00027 5.9E-09 49.5 2.7 53 17-69 67-125 (396)
116 PRK05963 3-oxoacyl-(acyl carri 97.2 0.0015 3.3E-08 46.1 6.4 52 13-65 90-142 (326)
117 PLN02854 3-ketoacyl-CoA syntha 97.2 0.001 2.2E-08 50.4 5.7 55 12-66 224-281 (521)
118 PLN02377 3-ketoacyl-CoA syntha 97.2 0.0013 2.7E-08 49.8 5.9 54 12-65 208-264 (502)
119 PLN03172 chalcone synthase fam 97.0 0.0022 4.8E-08 47.0 6.0 54 13-66 139-195 (393)
120 PLN03169 chalcone synthase fam 97.0 0.0033 7.1E-08 46.0 6.4 54 12-65 142-198 (391)
121 PLN03170 chalcone synthase; Pr 97.0 0.0022 4.8E-08 47.1 5.5 54 13-66 143-199 (401)
122 PLN03173 chalcone synthase; Pr 96.9 0.0026 5.7E-08 46.6 5.7 54 13-66 139-195 (391)
123 PF08392 FAE1_CUT1_RppA: FAE1/ 96.9 0.0025 5.3E-08 45.1 4.9 67 11-78 118-187 (290)
124 PLN03171 chalcone synthase-lik 96.6 0.0082 1.8E-07 44.1 6.2 53 13-65 145-200 (399)
125 PLN00415 3-ketoacyl-CoA syntha 96.4 0.014 3E-07 43.9 6.2 55 12-66 170-227 (466)
126 PRK07937 lipid-transfer protei 95.8 0.017 3.7E-07 41.8 4.3 45 18-65 67-113 (352)
127 PLN02577 hydroxymethylglutaryl 95.7 0.035 7.6E-07 41.7 5.6 52 14-65 92-149 (459)
128 TIGR01833 HMG-CoA-S_euk 3-hydr 95.6 0.042 9.2E-07 41.2 5.9 52 14-65 89-146 (454)
129 PF01154 HMG_CoA_synt_N: Hydro 95.5 0.07 1.5E-06 35.2 5.9 52 14-65 92-149 (174)
130 COG3425 PksG 3-hydroxy-3-methy 94.4 0.1 2.2E-06 38.3 4.9 53 14-66 90-144 (377)
131 PF07451 SpoVAD: Stage V sporu 93.8 0.23 4.9E-06 35.7 5.6 58 13-72 86-143 (329)
132 PF00195 Chal_sti_synt_N: Chal 92.2 0.53 1.1E-05 32.3 5.4 59 8-66 132-193 (226)
133 COG3424 BcsA Predicted naringe 86.1 2.7 5.9E-05 30.5 5.3 59 8-66 108-169 (356)
134 PF04422 FrhB_FdhB_N: Coenzyme 78.9 4.7 0.0001 23.0 3.7 33 31-63 13-45 (82)
135 PF00036 EF-hand_1: EF hand; 61.1 4.2 9.1E-05 18.5 0.6 11 87-97 7-17 (29)
136 TIGR02706 P_butyryltrans phosp 54.2 17 0.00037 25.7 3.1 24 40-63 74-97 (294)
137 PF01170 UPF0020: Putative RNA 53.6 29 0.00062 22.6 3.9 50 3-52 5-54 (179)
138 COG1058 CinA Predicted nucleot 49.2 32 0.00069 24.2 3.7 62 4-66 12-73 (255)
139 TIGR00651 pta phosphate acetyl 48.9 35 0.00077 24.4 4.0 37 42-79 89-125 (303)
140 PRK07742 phosphate butyryltran 47.1 24 0.00052 25.1 2.9 25 39-63 76-100 (299)
141 PF13405 EF-hand_6: EF-hand do 45.4 9.7 0.00021 17.2 0.5 11 87-97 7-17 (31)
142 COG0399 WecE Predicted pyridox 44.6 22 0.00049 26.3 2.5 43 17-64 42-84 (374)
143 TIGR01177 conserved hypothetic 41.3 48 0.001 23.6 3.7 43 3-45 159-201 (329)
144 PRK05805 phosphate butyryltran 41.0 34 0.00073 24.4 2.9 24 40-63 78-101 (301)
145 TIGR03289 frhB coenzyme F420 h 40.0 55 0.0012 23.0 3.8 31 32-62 18-48 (275)
146 KOG1393|consensus 39.4 31 0.00067 26.0 2.5 32 29-60 118-153 (462)
147 PF01515 PTA_PTB: Phosphate ac 38.7 46 0.00099 24.0 3.3 25 40-64 103-127 (319)
148 PRK09653 eutD phosphotransacet 37.0 70 0.0015 23.0 4.0 38 42-80 105-142 (324)
149 PF13202 EF-hand_5: EF hand; P 36.4 18 0.00039 15.7 0.6 11 87-97 6-16 (25)
150 PRK00945 acetyl-CoA decarbonyl 34.1 57 0.0012 21.4 3.0 22 52-73 107-128 (171)
151 TIGR02709 branched_ptb branche 33.5 62 0.0013 22.9 3.2 30 35-64 50-79 (271)
152 PRK09325 coenzyme F420-reducin 33.0 79 0.0017 22.2 3.7 31 31-61 19-49 (282)
153 TIGR00182 plsX fatty acid/phos 32.8 53 0.0012 23.7 2.9 20 42-61 72-91 (322)
154 PF01041 DegT_DnrJ_EryC1: DegT 32.7 41 0.00089 24.1 2.3 46 14-64 30-75 (363)
155 KOG0030|consensus 29.3 19 0.0004 23.2 0.1 15 85-99 93-107 (152)
156 PRK05331 putative phosphate ac 28.1 65 0.0014 23.4 2.7 23 39-61 73-103 (334)
157 cd07041 STAS_RsbR_RsbS_like Su 27.8 1.3E+02 0.0028 17.3 3.6 41 34-79 54-94 (109)
158 PF00497 SBP_bac_3: Bacterial 26.7 91 0.002 19.7 3.0 19 42-60 141-159 (225)
159 TIGR00315 cdhB CO dehydrogenas 26.5 1.2E+02 0.0026 19.7 3.4 22 52-73 99-120 (162)
160 cd06844 STAS Sulphate Transpor 26.3 1.2E+02 0.0027 17.2 3.3 41 34-79 52-92 (100)
161 PRK09326 F420H2 dehydrogenase 26.3 1E+02 0.0022 22.3 3.4 32 34-65 90-121 (341)
162 PF00975 Thioesterase: Thioest 26.2 1.2E+02 0.0027 19.6 3.6 34 28-61 67-101 (229)
163 cd01410 SIRT7 SIRT7: Eukaryoti 26.1 1.3E+02 0.0028 20.1 3.7 31 41-73 145-175 (206)
164 TIGR02981 phageshock_pspE phag 26.0 45 0.00098 19.6 1.3 31 34-64 64-94 (101)
165 PF02146 SIR2: Sir2 family; I 25.9 97 0.0021 19.9 3.0 25 40-66 152-176 (178)
166 PRK10287 thiosulfate:cyanide s 25.6 55 0.0012 19.4 1.7 32 33-64 65-96 (104)
167 PRK10605 N-ethylmaleimide redu 24.6 1.8E+02 0.004 21.2 4.5 55 42-97 303-357 (362)
168 PRK11890 phosphate acetyltrans 24.6 2.4E+02 0.0052 20.4 5.0 47 17-64 61-107 (312)
169 PRK05986 cob(I)alamin adenolsy 24.6 1.1E+02 0.0023 20.6 3.0 24 36-59 98-121 (191)
170 PF04166 PdxA: Pyridoxal phosp 24.3 1.5E+02 0.0032 21.3 3.8 29 36-64 71-99 (298)
171 TIGR00708 cobA cob(I)alamin ad 24.2 1.1E+02 0.0024 20.1 3.0 24 36-59 80-103 (173)
172 COG0416 PlsX Fatty acid/phosph 23.5 2E+02 0.0044 21.1 4.4 38 41-81 84-121 (338)
173 PRK13846 putative glycerol-3-p 23.2 1E+02 0.0022 22.4 2.9 37 41-80 85-121 (316)
174 cd01409 SIRT4 SIRT4: Eukaryoti 23.0 2E+02 0.0044 19.9 4.3 31 40-72 193-223 (260)
175 COG1732 OpuBC Periplasmic glyc 23.0 1.4E+02 0.003 21.6 3.5 40 20-68 187-226 (300)
176 COG2109 BtuR ATP:corrinoid ade 22.6 1.5E+02 0.0033 20.0 3.4 24 36-59 105-128 (198)
177 cd01407 SIR2-fam SIR2 family o 22.5 2.3E+02 0.0049 18.9 4.4 31 42-74 158-188 (218)
178 cd01413 SIR2_Af2 SIR2_Af2: Arc 22.3 2E+02 0.0043 19.4 4.0 31 41-73 161-191 (222)
179 COG1029 FwdB Formylmethanofura 22.1 1.1E+02 0.0024 23.0 2.9 26 45-70 326-351 (429)
180 PF03466 LysR_substrate: LysR 22.1 1.2E+02 0.0026 18.7 2.8 35 25-63 31-65 (209)
181 PF09970 DUF2204: Nucleotidyl 22.1 99 0.0021 20.3 2.5 24 40-63 3-26 (181)
182 TIGR01096 3A0103s03R lysine-ar 21.9 1.1E+02 0.0025 20.0 2.9 19 42-60 162-180 (250)
183 TIGR03871 ABC_peri_MoxJ_2 quin 21.9 1.1E+02 0.0025 19.8 2.8 20 42-61 143-162 (232)
184 PRK05312 pdxA 4-hydroxythreoni 21.9 1.3E+02 0.0029 22.0 3.3 29 36-64 97-125 (336)
185 PRK03670 competence damage-ind 21.8 1.9E+02 0.0041 20.1 3.9 57 7-63 14-70 (252)
186 TIGR03870 ABC_MoxJ methanol ox 21.5 1.1E+02 0.0024 20.5 2.7 19 43-61 153-171 (246)
187 COG0280 Pta Phosphotransacetyl 21.2 1.9E+02 0.004 21.2 3.9 25 40-64 104-128 (327)
188 PF02142 MGS: MGS-like domain 21.1 87 0.0019 17.9 1.9 19 44-62 51-69 (95)
189 PRK03743 pdxA 4-hydroxythreoni 21.0 1.7E+02 0.0037 21.4 3.7 29 36-64 98-126 (332)
190 PRK01909 pdxA 4-hydroxythreoni 20.9 1.5E+02 0.0033 21.6 3.4 30 35-64 89-118 (329)
191 cd08439 PBP2_LrhA_like The C-t 20.9 1.3E+02 0.0029 18.2 2.8 36 22-61 22-57 (185)
192 PTZ00409 Sir2 (Silent Informat 20.7 2.9E+02 0.0063 19.4 4.7 32 41-74 189-220 (271)
193 PF00885 DMRL_synthase: 6,7-di 20.6 1.1E+02 0.0024 19.3 2.4 23 40-62 49-71 (144)
194 PRK03946 pdxA 4-hydroxythreoni 20.4 1.6E+02 0.0035 21.3 3.4 29 36-64 79-107 (307)
195 PF03846 SulA: Cell division i 20.3 1.1E+02 0.0024 19.0 2.3 22 38-59 95-116 (119)
196 PF02572 CobA_CobO_BtuR: ATP:c 20.2 1.3E+02 0.0028 19.8 2.7 25 35-59 78-102 (172)
197 TIGR00557 pdxA 4-hydroxythreon 20.1 1.5E+02 0.0033 21.5 3.3 29 36-64 90-118 (320)
198 cd08451 PBP2_BudR The C-termin 20.1 1.3E+02 0.0028 18.2 2.7 38 20-61 21-58 (199)
No 1
>PRK14691 3-oxoacyl-(acyl carrier protein) synthase II; Provisional
Probab=99.94 E-value=2.1e-26 Score=164.07 Aligned_cols=99 Identities=24% Similarity=0.292 Sum_probs=93.7
Q ss_pred CCcccccCCCcchHHhHHHHHhCCCCCcceecccchHHHHHHHHHHHHHHcCCCCEEEEEecCCCCCHHHHHHHHHccCC
Q psy11966 1 MTQFVLVAPSTPRAAKSNSPIFALAGPCCTIDTACSSTLFGLHLAVGAIERGECDHAIIGGVNLTLKPATSLMYHKYNML 80 (99)
Q Consensus 1 ~~~~~~~~~~~~~~~~~ia~~~~l~Gp~~tv~~acaS~~~Ai~~A~~~i~~G~~d~~l~gg~~~~~~~~~~~~~~~~~~l 80 (99)
++|+.++.++.|+++++|++.|+++||+++++++|+|++.||..|+++|++|++|++||||+|..+++..+..|..++.+
T Consensus 57 ~~p~~~~~~~~n~~a~~is~~~~l~Gp~~ti~~aCaSg~~Al~~A~~~I~~G~~d~~ivgg~d~~~~~~~~~~f~~~~~l 136 (342)
T PRK14691 57 LSPFTVPSFLVNLAAGHVSIKHHFKGPIGAPVTACAAGVQAIGDAVRMIRNNEADVALCGGAEAVIDTVSLAGFAAARAL 136 (342)
T ss_pred cChhHHhhhhhhHHHHHHHHHhCCCCCccccccHhHHHHHHHHHHHHHHHcCCCCEEEEecccccCCHHHHHHHHHhhhh
Confidence 46888999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred C------CCCCCcccCCCCCceeCC
Q psy11966 81 S------PTGTISPFDASGVGHRQP 99 (99)
Q Consensus 81 s------~~~~~~pfd~~~~G~v~g 99 (99)
+ |++.|||||++|+||++|
T Consensus 137 s~~~~~~p~~~~rPFd~~r~G~v~g 161 (342)
T PRK14691 137 STHFNSTPEKASRPFDTARDGFVMG 161 (342)
T ss_pred hcCCCCCCCcCCCCCCCCCCCcccc
Confidence 7 567899999999999985
No 2
>KOG1394|consensus
Probab=99.92 E-value=2.4e-26 Score=162.25 Aligned_cols=99 Identities=24% Similarity=0.325 Sum_probs=95.4
Q ss_pred CCcccccCCCcchHHhHHHHHhCCCCCcceecccchHHHHHHHHHHHHHHcCCCCEEEEEecCCCCCHHHHHHHHHccCC
Q psy11966 1 MTQFVLVAPSTPRAAKSNSPIFALAGPCCTIDTACSSTLFGLHLAVGAIERGECDHAIIGGVNLTLKPATSLMYHKYNML 80 (99)
Q Consensus 1 ~~~~~~~~~~~~~~~~~ia~~~~l~Gp~~tv~~acaS~~~Ai~~A~~~i~~G~~d~~l~gg~~~~~~~~~~~~~~~~~~l 80 (99)
++||+++..+.|+.+++|+..|||+||..++++||++|.++|..|.+.|+.|+.|++|+||+|..++|....+|.+.+.|
T Consensus 153 vsPffVPkil~NM~ag~vsm~~gl~GpnhsvSTACATg~h~igda~n~Ir~GdaDvmlAGgsE~~I~PlslaGF~r~RAL 232 (440)
T KOG1394|consen 153 VSPFFVPKILTNMAAGYVSMKYGLRGPNHSVSTACATGNHCIGDAFNFIRLGDADVMLAGGSEACINPLSLAGFSRARAL 232 (440)
T ss_pred cCccccchhhcccccchhhhhhcCcCCchhhHhhhhhccchHHHHHHHHHhCccceeeccCcceeecchhhhhHHHHHHh
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CC-----CCCCcccCCCCCceeCC
Q psy11966 81 SP-----TGTISPFDASGVGHRQP 99 (99)
Q Consensus 81 s~-----~~~~~pfd~~~~G~v~g 99 (99)
|. ...+||||++|||||+|
T Consensus 233 St~nd~P~~aSRPfD~~RdGFVmG 256 (440)
T KOG1394|consen 233 STRNDNPQKASRPFDKKRDGFVMG 256 (440)
T ss_pred hhcCCCccccCCCCccCCCceeec
Confidence 84 45899999999999986
No 3
>PRK08722 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed
Probab=99.92 E-value=7.4e-25 Score=159.30 Aligned_cols=99 Identities=24% Similarity=0.340 Sum_probs=93.3
Q ss_pred CCcccccCCCcchHHhHHHHHhCCCCCcceecccchHHHHHHHHHHHHHHcCCCCEEEEEecCCCCCHHHHHHHHHccCC
Q psy11966 1 MTQFVLVAPSTPRAAKSNSPIFALAGPCCTIDTACSSTLFGLHLAVGAIERGECDHAIIGGVNLTLKPATSLMYHKYNML 80 (99)
Q Consensus 1 ~~~~~~~~~~~~~~~~~ia~~~~l~Gp~~tv~~acaS~~~Ai~~A~~~i~~G~~d~~l~gg~~~~~~~~~~~~~~~~~~l 80 (99)
++|+.+++++.+.++++|++.|+++||+++++++|+|++.||.+|+++|++|++|+|||||+|...++..+..|..++.+
T Consensus 130 ~~~~~~~~~~~n~~a~~is~~~gl~Gp~~ti~~aCas~~~Al~~A~~~i~~G~~d~~lvgg~d~~~~~~~~~~f~~~~~l 209 (414)
T PRK08722 130 VSPFFVPSTIVNMIAGNLSIMRGLRGPNIAISTACTTGLHNIGHAARMIAYGDADAMVAGGAEKASTPLGMAGFGAAKAL 209 (414)
T ss_pred CCchhcccccccHHHHHHHHHhCCCCCccccccccHHHHHHHHHHHHHHHcCCCCEEEEecccccCCHHHHHHHHHcCCc
Confidence 35788889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred C-----CCCCCcccCCCCCceeCC
Q psy11966 81 S-----PTGTISPFDASGVGHRQP 99 (99)
Q Consensus 81 s-----~~~~~~pfd~~~~G~v~g 99 (99)
+ |++.|||||++++||++|
T Consensus 210 s~~~~~p~~~~rpfd~~~~G~~~g 233 (414)
T PRK08722 210 STRNDEPQKASRPWDKDRDGFVLG 233 (414)
T ss_pred ccCCCCCccccCcCcCCCCceEee
Confidence 7 456899999999999985
No 4
>PF00109 ketoacyl-synt: Beta-ketoacyl synthase, N-terminal domain; InterPro: IPR014030 Beta-ketoacyl-ACP synthase 2.3.1.41 from EC (KAS) [] is the enzyme that catalyzes the condensation of malonyl-ACP with the growing fatty acid chain. It is found as a component of a number of enzymatic systems, including fatty acid synthetase (FAS), which catalyzes the formation of long-chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH; the multi-functional 6-methysalicylic acid synthase (MSAS) from Penicillium patulum [], which is involved in the biosynthesis of a polyketide antibiotic; polyketide antibiotic synthase enzyme systems; Emericella nidulans multifunctional protein Wa, which is involved in the biosynthesis of conidial green pigment; Rhizobium nodulation protein nodE, which probably acts as a beta-ketoacyl synthase in the synthesis of the nodulation Nod factor fatty acyl chain; and yeast mitochondrial protein CEM1. The condensation reaction is a two step process, first the acyl component of an activated acyl primer is transferred to a cysteine residue of the enzyme and is then condensed with an activated malonyl donor with the concomitant release of carbon dioxide. This entry represents the N-terminal domain of beta-ketoacyl-ACP synthases. ; PDB: 1J3N_B 3KZU_C 1W0I_A 2IX4_A 1F91_B 2BYZ_D 2AQB_C 2BZ3_C 1H4F_C 2VB9_B ....
Probab=99.92 E-value=5.3e-25 Score=149.92 Aligned_cols=94 Identities=34% Similarity=0.475 Sum_probs=82.7
Q ss_pred ccCCCcchHHhHHHHHhCCCCCcceecccchHHHHHHHHHHHHHHcCCCCEEEEEecCCCCCHHHHHHHHHccCCCCCCC
Q psy11966 6 LVAPSTPRAAKSNSPIFALAGPCCTIDTACSSTLFGLHLAVGAIERGECDHAIIGGVNLTLKPATSLMYHKYNMLSPTGT 85 (99)
Q Consensus 6 ~~~~~~~~~~~~ia~~~~l~Gp~~tv~~acaS~~~Ai~~A~~~i~~G~~d~~l~gg~~~~~~~~~~~~~~~~~~ls~~~~ 85 (99)
+..++.+.++++|++.||++||+++++++|+|++.||..|+++|++|++|+|||||+|..+++..+..|..++.+++++.
T Consensus 147 ~~~~~~~~~a~~ia~~~gl~G~~~tv~~acaSgl~Al~~A~~~I~~G~~d~~lvgg~d~~~~~~~~~~~~~~~~~s~~~~ 226 (254)
T PF00109_consen 147 VPNTLPNSAAGRIAILFGLRGPSYTVSTACASGLAALEAAYRAIRSGEADVALVGGVDAPLSPFILAGFSALGALSADGP 226 (254)
T ss_dssp HHHHSTTHHHHHHHHHHTB-SSEEEEE-GGGHHHHHHHHHHHHHHTTSSSEEEEEEEE--SSHHHHHHHHHTTBB-TTSG
T ss_pred cCcccccccccchhhhcCCCCccccccccccccccccchhcccccccccccccccccccccccccccccccccccccccc
Confidence 33458999999999999999999999999999999999999999999999999999998899999999999999998889
Q ss_pred CcccCCCCCceeCC
Q psy11966 86 ISPFDASGVGHRQP 99 (99)
Q Consensus 86 ~~pfd~~~~G~v~g 99 (99)
++|||.+++||++|
T Consensus 227 ~~pf~~~~~G~v~g 240 (254)
T PF00109_consen 227 CRPFDPFADGFVLG 240 (254)
T ss_dssp GGSTBTTB-SB-BB
T ss_pred ccccCCCCCCEEEE
Confidence 99999999999986
No 5
>TIGR02813 omega_3_PfaA polyketide-type polyunsaturated fatty acid synthase PfaA. Members of the seed for this alignment are involved in omega-3 polyunsaturated fatty acid biosynthesis, such as the protein PfaA from the eicosapentaenoic acid biosynthesis operon in Photobacterium profundum strain SS9. PfaA is encoded together with PfaB, PfaC, and PfaD, and the functions of the individual polypeptides have not yet been described. More distant homologs of PfaA, also included with the reach of this model, appear to be involved in polyketide-like biosynthetic mechanisms of polyunsaturated fatty acid biosynthesis, an alternative to the more familiar iterated mechanism of chain extension and desaturation, and in most cases are encoded near genes for homologs of PfaB, PfaC, and/or PfaD.
Probab=99.92 E-value=8.1e-25 Score=181.95 Aligned_cols=97 Identities=22% Similarity=0.367 Sum_probs=93.2
Q ss_pred cccccCCCcchHHhHHHHHhCCCCCcceecccchHHHHHHHHHHHHHHcCCCCEEEEEecCCCCCHHHHHHHHHccCCCC
Q psy11966 3 QFVLVAPSTPRAAKSNSPIFALAGPCCTIDTACSSTLFGLHLAVGAIERGECDHAIIGGVNLTLKPATSLMYHKYNMLSP 82 (99)
Q Consensus 3 ~~~~~~~~~~~~~~~ia~~~~l~Gp~~tv~~acaS~~~Ai~~A~~~i~~G~~d~~l~gg~~~~~~~~~~~~~~~~~~ls~ 82 (99)
+..+++++.|++++|||+.|+|+||+++|+++|+||+.||++|+++|++|++|++||||++..+++..+..|++++.+|+
T Consensus 174 ~~~~~g~~~n~~A~RIS~~f~L~Gps~tVdtACsSSL~Al~~A~~~L~~G~~D~alvGGv~~~~~p~~~~~fs~~~~lS~ 253 (2582)
T TIGR02813 174 ENSFPGSLGNVISGRIANRFDLGGMNCVVDAACAGSLAAIRMALSELLEGRSEMMITGGVCTDNSPFMYMSFSKTPAFTT 253 (2582)
T ss_pred ccccccccccHHHHHHHHHhCCCCCcccccchhHHHHHHHHHHHHHHHcCCCCEEEEecceeeCCHHHHHHHHhccCcCC
Confidence 34578889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcccCCCCCceeCC
Q psy11966 83 TGTISPFDASGVGHRQP 99 (99)
Q Consensus 83 ~~~~~pfd~~~~G~v~g 99 (99)
++.|||||+++|||++|
T Consensus 254 ~g~crpFD~~adG~v~G 270 (2582)
T TIGR02813 254 NEDIQPFDIDSKGMMIG 270 (2582)
T ss_pred CCCccCCCCCCCccccc
Confidence 99999999999999986
No 6
>COG0304 FabB 3-oxoacyl-(acyl-carrier-protein) synthase [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.91 E-value=9.5e-25 Score=158.37 Aligned_cols=99 Identities=26% Similarity=0.350 Sum_probs=95.0
Q ss_pred CCcccccCCCcchHHhHHHHHhCCCCCcceecccchHHHHHHHHHHHHHHcCCCCEEEEEecCCCCCHHHHHHHHHccCC
Q psy11966 1 MTQFVLVAPSTPRAAKSNSPIFALAGPCCTIDTACSSTLFGLHLAVGAIERGECDHAIIGGVNLTLKPATSLMYHKYNML 80 (99)
Q Consensus 1 ~~~~~~~~~~~~~~~~~ia~~~~l~Gp~~tv~~acaS~~~Ai~~A~~~i~~G~~d~~l~gg~~~~~~~~~~~~~~~~~~l 80 (99)
++|+.++..+.++.++.++..||++||++++.++|+|+.+||.+|++.|+.|++|+||+||+|..+++.....|..++.|
T Consensus 128 ~~p~~~~~~~~~~~a~~vs~~~g~~G~~~~~~tACatg~~AIg~A~~~I~~G~ad~~iaGG~e~~i~~~~i~gF~am~Al 207 (412)
T COG0304 128 ISPFLVPKMLPNLAAGNVAIVFGLKGPNYTPVTACATGAHAIGDAVRLIRLGKADVVIAGGAEAAITPLGIAGFEAMRAL 207 (412)
T ss_pred cCchhhhhhccchHHHHHHHHhCCCCCcCChhhhHHhHHHHHHHHHHHHHcCCCCEEEEcccccccCHHHHHHHHHHHHh
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CC-----CCCCcccCCCCCceeCC
Q psy11966 81 SP-----TGTISPFDASGVGHRQP 99 (99)
Q Consensus 81 s~-----~~~~~pfd~~~~G~v~g 99 (99)
++ +..|||||++|||||+|
T Consensus 208 st~nd~p~~asrPfd~~RdGfv~g 231 (412)
T COG0304 208 STRNDDPEKASRPFDKNRDGFVIG 231 (412)
T ss_pred ccCCCCccccCCCCCCCCCCEEEe
Confidence 84 36899999999999986
No 7
>PRK07967 3-oxoacyl-(acyl carrier protein) synthase I; Reviewed
Probab=99.91 E-value=2.9e-24 Score=155.94 Aligned_cols=98 Identities=20% Similarity=0.309 Sum_probs=89.0
Q ss_pred CCcccccCCCcchHHhHHHHHhCCCCCcceecccchHHHHHHHHHHHHHHcCCCCEEEEEecCCCCCHHHHHHHHHccCC
Q psy11966 1 MTQFVLVAPSTPRAAKSNSPIFALAGPCCTIDTACSSTLFGLHLAVGAIERGECDHAIIGGVNLTLKPATSLMYHKYNML 80 (99)
Q Consensus 1 ~~~~~~~~~~~~~~~~~ia~~~~l~Gp~~tv~~acaS~~~Ai~~A~~~i~~G~~d~~l~gg~~~~~~~~~~~~~~~~~~l 80 (99)
++|+.++..+.+.++++|+++|+++||+++++++|+|++.||.+|+++|++|++|++||||+|. +.+.....|+.++.+
T Consensus 128 ~~p~~~~~~~~~~~a~~is~~~~l~Gp~~tvs~aCas~~~Ai~~A~~~ir~G~~d~~lvgg~d~-~~~~~~~~f~~~~~l 206 (406)
T PRK07967 128 VGPYAVTKAMASTVSACLATPFKIKGVNYSISSACATSAHCIGNAVEQIQLGKQDIVFAGGGEE-LDWEMSCLFDAMGAL 206 (406)
T ss_pred CCchhhcccccchHHHHHHHHHCCCCCccccccHhHHHHHHHHHHHHHHHcCCCCEEEEeeecc-cChHHHHHHHHhhhh
Confidence 3577888899999999999999999999999999999999999999999999999999999998 555666778888888
Q ss_pred C------CCCCCcccCCCCCceeCC
Q psy11966 81 S------PTGTISPFDASGVGHRQP 99 (99)
Q Consensus 81 s------~~~~~~pfd~~~~G~v~g 99 (99)
+ |+..|||||++|+||++|
T Consensus 207 s~~~~~~p~~~~rPFd~~r~G~v~g 231 (406)
T PRK07967 207 STKYNDTPEKASRAYDANRDGFVIA 231 (406)
T ss_pred ccCCCCCCCcCCcCCcCCCCceeee
Confidence 6 456899999999999986
No 8
>PRK05952 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed
Probab=99.90 E-value=7.5e-24 Score=152.77 Aligned_cols=97 Identities=23% Similarity=0.341 Sum_probs=91.4
Q ss_pred CcccccCCCcchHHhHHHHHhCCCCCcceecccchHHHHHHHHHHHHHHcCCCCEEEEEecCCCCCHHHHHHHHHccCCC
Q psy11966 2 TQFVLVAPSTPRAAKSNSPIFALAGPCCTIDTACSSTLFGLHLAVGAIERGECDHAIIGGVNLTLKPATSLMYHKYNMLS 81 (99)
Q Consensus 2 ~~~~~~~~~~~~~~~~ia~~~~l~Gp~~tv~~acaS~~~Ai~~A~~~i~~G~~d~~l~gg~~~~~~~~~~~~~~~~~~ls 81 (99)
+|+.++.++.|.+++++++.|+++||+++++++|+|++.||.+|+++|++|++|++||||+|..+++..+..|..++.++
T Consensus 113 ~~~~~~~~~~n~~a~~ia~~~~~~Gp~~ti~~aCasg~~Ai~~A~~~i~~G~~d~~lvgg~d~~~~~~~~~~~~~~~~ls 192 (381)
T PRK05952 113 DLENWLDTLPHQAAIAAARQIGTQGPVLAPMAACATGLWAIAQGVELIQTGQCQRVIAGAVEAPITPLTLAGFQQMGALA 192 (381)
T ss_pred CHHHHHHhcccHHHHHHHHHhCCCCccccccchhHHHHHHHHHHHHHHHcCCCCEEEEccccccCCHHHHHHHHhcCCcC
Confidence 45667788999999999999999999999999999999999999999999999999999999989999999999999998
Q ss_pred CCCCCcccCCCCCceeCC
Q psy11966 82 PTGTISPFDASGVGHRQP 99 (99)
Q Consensus 82 ~~~~~~pfd~~~~G~v~g 99 (99)
++ .|||||++++||++|
T Consensus 193 ~~-~~rPfd~~r~G~v~g 209 (381)
T PRK05952 193 KT-GAYPFDRQREGLVLG 209 (381)
T ss_pred CC-CCCCCCCCCCCcccc
Confidence 76 699999999999986
No 9
>PRK07910 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed
Probab=99.90 E-value=7.8e-24 Score=154.13 Aligned_cols=98 Identities=22% Similarity=0.237 Sum_probs=91.6
Q ss_pred CcccccCCCcchHHhHHHHHhCCCCCcceecccchHHHHHHHHHHHHHHcCCCCEEEEEecCCCCCHHHHHHHHHccC-C
Q psy11966 2 TQFVLVAPSTPRAAKSNSPIFALAGPCCTIDTACSSTLFGLHLAVGAIERGECDHAIIGGVNLTLKPATSLMYHKYNM-L 80 (99)
Q Consensus 2 ~~~~~~~~~~~~~~~~ia~~~~l~Gp~~tv~~acaS~~~Ai~~A~~~i~~G~~d~~l~gg~~~~~~~~~~~~~~~~~~-l 80 (99)
+|+.+..++.+.++.++++.++++||+++++++|+|++.||.+|+++|++|++|++||||+|..+++..+..|..++. +
T Consensus 138 ~~~~~~~~~~n~~a~~is~~~~~~G~~~ti~taCaS~~~Al~~A~~~I~~G~~d~aivgg~~~~~~~~~~~~f~~~~~~l 217 (418)
T PRK07910 138 SPLAVQMYMPNGPAAAVGLERHAKAGVITPVSACASGSEAIAQAWRQIVLGEADIAICGGVETRIEAVPIAGFAQMRIVM 217 (418)
T ss_pred ChhHHHHhccccHHHHHHHHhCCCCCcccccchhHHHHHHHHHHHHHHHcCCCCEEEEccccccCCHHHHHHHHhcCCcc
Confidence 456677788899999999999999999999999999999999999999999999999999999999999999999998 7
Q ss_pred C-----CCCCCcccCCCCCceeCC
Q psy11966 81 S-----PTGTISPFDASGVGHRQP 99 (99)
Q Consensus 81 s-----~~~~~~pfd~~~~G~v~g 99 (99)
+ +++.|||||++++||++|
T Consensus 218 s~~~~~~~~~~rPFd~~~~G~v~g 241 (418)
T PRK07910 218 STNNDDPAGACRPFDKDRDGFVFG 241 (418)
T ss_pred ccCCCCCCCCcCCCcCCCCCEeee
Confidence 7 677999999999999986
No 10
>PLN02787 3-oxoacyl-[acyl-carrier-protein] synthase II
Probab=99.90 E-value=7.4e-24 Score=158.12 Aligned_cols=98 Identities=26% Similarity=0.342 Sum_probs=91.1
Q ss_pred CcccccCCCcchHHhHHHHHhCCCCCcceecccchHHHHHHHHHHHHHHcCCCCEEEEEecCCCCCHHHHHHHHHccCCC
Q psy11966 2 TQFVLVAPSTPRAAKSNSPIFALAGPCCTIDTACSSTLFGLHLAVGAIERGECDHAIIGGVNLTLKPATSLMYHKYNMLS 81 (99)
Q Consensus 2 ~~~~~~~~~~~~~~~~ia~~~~l~Gp~~tv~~acaS~~~Ai~~A~~~i~~G~~d~~l~gg~~~~~~~~~~~~~~~~~~ls 81 (99)
+|+.++..+.++.+++|++.||++||+++|+++|+|++.||..|+++|++|++|+|||||+|..+++..+..|..++.|+
T Consensus 258 ~p~~~~~~~~n~~a~~ia~~~gl~Gp~~tistACASs~~Ai~~A~~~Ir~G~aD~aLvGG~d~~l~p~~~~~f~~~~aLS 337 (540)
T PLN02787 258 NPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHIIRGEADVMLCGGSDAAIIPIGLGGFVACRALS 337 (540)
T ss_pred CcchhhhhcccHHHHHHHHHhCCCCCccccccccccHHHHHHHHHHHHHcCCCCEEEEeccccccCHHHHHHHHHHHHhh
Confidence 56667777888899999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred -----CCCCCcccCCCCCceeCC
Q psy11966 82 -----PTGTISPFDASGVGHRQP 99 (99)
Q Consensus 82 -----~~~~~~pfd~~~~G~v~g 99 (99)
|++.|||||++||||++|
T Consensus 338 ~~~~~p~~~~rPFD~~rdGfv~G 360 (540)
T PLN02787 338 QRNDDPTKASRPWDMNRDGFVMG 360 (540)
T ss_pred ccCCCcccccCCcccCCCCcccc
Confidence 456899999999999986
No 11
>cd00832 CLF Chain-length factor (CLF) is a factor required for polyketide chain initiation of aromatic antibiotic-producing polyketide synthases (PKSs) of filamentous bacteria. CLFs have been shown to have decarboxylase activity towards malonyl-acyl carrier protein (ACP). CLFs are similar to other elongation ketosynthase domains, but their active site cysteine is replaced by a conserved glutamine.
Probab=99.90 E-value=2.8e-23 Score=150.42 Aligned_cols=97 Identities=22% Similarity=0.191 Sum_probs=89.6
Q ss_pred CcccccCCCcchHHhHHHHHhCCCCCcceecccchHHHHHHHHHHHHHHcCCCCEEEEEecCCCCCHHHHHHHHHccCCC
Q psy11966 2 TQFVLVAPSTPRAAKSNSPIFALAGPCCTIDTACSSTLFGLHLAVGAIERGECDHAIIGGVNLTLKPATSLMYHKYNMLS 81 (99)
Q Consensus 2 ~~~~~~~~~~~~~~~~ia~~~~l~Gp~~tv~~acaS~~~Ai~~A~~~i~~G~~d~~l~gg~~~~~~~~~~~~~~~~~~ls 81 (99)
+|+.++.++.+.++++|++.|+++||+++++++|+|++.||.+|+++|++|+ |++||||+|..+++..+..|..++.++
T Consensus 128 ~~~~~~~~~~~~~a~~is~~~gl~Gp~~ti~~acaS~~~Al~~A~~~i~~G~-d~~i~gg~d~~~~p~~~~~~~~~~~ls 206 (399)
T cd00832 128 SAYQSFAWFYAVNTGQISIRHGMRGPSGVVVAEQAGGLDALAQARRLVRRGT-PLVVSGGVDSALCPWGWVAQLSSGRLS 206 (399)
T ss_pred ChhhhhhhhhhHHHHHHHHHhCCCCCcccccchhHHHHHHHHHHHHHHHcCC-CeEEEEeeccccCHHHHHHHHhccccC
Confidence 4566677788889999999999999999999999999999999999999999 999999999999999999999999987
Q ss_pred C----CCCCcccCCCCCceeCC
Q psy11966 82 P----TGTISPFDASGVGHRQP 99 (99)
Q Consensus 82 ~----~~~~~pfd~~~~G~v~g 99 (99)
. ++.|||||++++||++|
T Consensus 207 ~~~~p~~~~rPFd~~~~G~~~g 228 (399)
T cd00832 207 TSDDPARAYLPFDAAAAGYVPG 228 (399)
T ss_pred CCCCCCCCcCCCcCCCCCEeee
Confidence 4 35899999999999986
No 12
>PRK06333 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed
Probab=99.89 E-value=2.9e-23 Score=150.89 Aligned_cols=98 Identities=26% Similarity=0.319 Sum_probs=90.5
Q ss_pred CcccccCCCcchHHhHHHHHhCCCCCcceecccchHHHHHHHHHHHHHHcCCCCEEEEEecCCCCCHHHHHHHHHccCCC
Q psy11966 2 TQFVLVAPSTPRAAKSNSPIFALAGPCCTIDTACSSTLFGLHLAVGAIERGECDHAIIGGVNLTLKPATSLMYHKYNMLS 81 (99)
Q Consensus 2 ~~~~~~~~~~~~~~~~ia~~~~l~Gp~~tv~~acaS~~~Ai~~A~~~i~~G~~d~~l~gg~~~~~~~~~~~~~~~~~~ls 81 (99)
+|+.+.+.+.+.++++|++.|+++||+++++++|+|++.||.+|+++|++|++|++||||+|.++++.....|..++.++
T Consensus 140 ~~~~~~~~~~~~~a~~is~~~gl~Gp~~~v~~aCaSg~~Al~~A~~~I~~G~~d~alvgG~e~~~~~~~~~~f~~~~~l~ 219 (424)
T PRK06333 140 SPFTIPSFLTNMAAGHVSIRYGFKGPLGAPVTACAAGVQAIGDAARLIRSGEADVAVCGGTEAAIDRVSLAGFAAARALS 219 (424)
T ss_pred ChhHHhhhhhhHHHHHHHHHhCCCCCCccccchhHHHHHHHHHHHHHHHcCCCCEEEEeeecccCCHHHHHHHHHccccc
Confidence 46677788889999999999999999999999999999999999999999999999999999999998888899888886
Q ss_pred ------CCCCCcccCCCCCceeCC
Q psy11966 82 ------PTGTISPFDASGVGHRQP 99 (99)
Q Consensus 82 ------~~~~~~pfd~~~~G~v~g 99 (99)
+++.+||||++++|+++|
T Consensus 220 ~~~~~~p~~~~~Pfd~~~~G~~~g 243 (424)
T PRK06333 220 TRFNDAPEQASRPFDRDRDGFVMG 243 (424)
T ss_pred ccCCCCCCcCCCCCCCCCCCeEEe
Confidence 356899999999999875
No 13
>COG3321 Polyketide synthase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.89 E-value=8.7e-24 Score=166.95 Aligned_cols=98 Identities=41% Similarity=0.679 Sum_probs=93.9
Q ss_pred CcccccCCCcchHHhHHHHHhCCCCCcceecccchHHHHHHHHHHHHHHcCCCCEEEEEecCCCCCHHHHHHHHHccCCC
Q psy11966 2 TQFVLVAPSTPRAAKSNSPIFALAGPCCTIDTACSSTLFGLHLAVGAIERGECDHAIIGGVNLTLKPATSLMYHKYNMLS 81 (99)
Q Consensus 2 ~~~~~~~~~~~~~~~~ia~~~~l~Gp~~tv~~acaS~~~Ai~~A~~~i~~G~~d~~l~gg~~~~~~~~~~~~~~~~~~ls 81 (99)
+++...++..+.+++|||+.|+++||+++|+++|+|++.|+++|++.|++|++|++|+||++...++.....+++.+.+|
T Consensus 141 ~~~~~~g~~~~~~a~Risy~l~l~GPs~~vdtaCSSsLvAvhlA~~sL~~Ge~d~alaGgv~l~~~p~~~~~~~~~g~ls 220 (1061)
T COG3321 141 PEYAITGNSSSVAAGRISYVLGLSGPSVTVDTACSSSLVAVHLACQSLRLGECDLALAGGVNLVLSPESSYLFSAGGMLS 220 (1061)
T ss_pred cceecccchhhHHHHHHHHHhcCCCCCccccchhhHHHHHHHHHHHHHHcCCCCEEEecceEeccCCcceeeeecccCcC
Confidence 35677788888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcccCCCCCceeCC
Q psy11966 82 PTGTISPFDASGVGHRQP 99 (99)
Q Consensus 82 ~~~~~~pfd~~~~G~v~g 99 (99)
++++|++||+++|||++|
T Consensus 221 ~~g~c~~fd~~adG~v~g 238 (1061)
T COG3321 221 PDGRCKAFDADADGYVRG 238 (1061)
T ss_pred CCCcceecccCCCCEEEe
Confidence 999999999999999986
No 14
>PTZ00050 3-oxoacyl-acyl carrier protein synthase; Provisional
Probab=99.89 E-value=5.5e-23 Score=149.67 Aligned_cols=98 Identities=23% Similarity=0.319 Sum_probs=91.0
Q ss_pred CcccccCCCcchHHhHHHHHhCCCCCcceecccchHHHHHHHHHHHHHHcCCCCEEEEEecCCCCCHHHHHHHHHccCCC
Q psy11966 2 TQFVLVAPSTPRAAKSNSPIFALAGPCCTIDTACSSTLFGLHLAVGAIERGECDHAIIGGVNLTLKPATSLMYHKYNMLS 81 (99)
Q Consensus 2 ~~~~~~~~~~~~~~~~ia~~~~l~Gp~~tv~~acaS~~~Ai~~A~~~i~~G~~d~~l~gg~~~~~~~~~~~~~~~~~~ls 81 (99)
+|+.+++.+.+.++++|++.|+++||+++|+++|+|++.||.+|+++|++|++|++||||+|..+++..+..|.+++.++
T Consensus 135 ~~~~~~~~~~n~~a~~is~~~~l~Gp~~ti~~aCaSg~~Al~~A~~~I~~G~~d~~lvgG~e~~~~p~~~~~f~~~~~l~ 214 (421)
T PTZ00050 135 SPYFIPKILGNMAAGLVAIKHKLKGPSGSAVTACATGAHCIGEAFRWIKYGEADIMICGGTEASITPVSFAGFSRMRALC 214 (421)
T ss_pred CHHHHHhhhhhHHHHHHHHHhCCCCcccccccHhHHHHHHHHHHHHHHHcCCCCEEEECcccccCCHHHHHHHHhhhccc
Confidence 56778888999999999999999999999999999999999999999999999999999999988998888999998876
Q ss_pred ------CCCCCcccCCCCCceeCC
Q psy11966 82 ------PTGTISPFDASGVGHRQP 99 (99)
Q Consensus 82 ------~~~~~~pfd~~~~G~v~g 99 (99)
++..+||||++++|+++|
T Consensus 215 ~~~~~~p~~~~~pfd~~~~G~~~g 238 (421)
T PTZ00050 215 TKYNDDPQRASRPFDKDRAGFVMG 238 (421)
T ss_pred cCcCCCCCccCCCCcCCCCCEeec
Confidence 456899999999999875
No 15
>PRK08439 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed
Probab=99.89 E-value=9.4e-23 Score=147.88 Aligned_cols=99 Identities=22% Similarity=0.266 Sum_probs=93.0
Q ss_pred CCcccccCCCcchHHhHHHHHhCCCCCcceecccchHHHHHHHHHHHHHHcCCCCEEEEEecCCCCCHHHHHHHHHccCC
Q psy11966 1 MTQFVLVAPSTPRAAKSNSPIFALAGPCCTIDTACSSTLFGLHLAVGAIERGECDHAIIGGVNLTLKPATSLMYHKYNML 80 (99)
Q Consensus 1 ~~~~~~~~~~~~~~~~~ia~~~~l~Gp~~tv~~acaS~~~Ai~~A~~~i~~G~~d~~l~gg~~~~~~~~~~~~~~~~~~l 80 (99)
++|+.++..+.+.++++|++.||++||+++++++|+|++.||.+|+++|++|++|++|++|+|..+++..+..|..++.+
T Consensus 128 ~~~~~~~~~~~~~~a~~is~~~gl~Gp~~~~~~acas~~~Al~~A~~~i~~G~~d~~lv~g~d~~l~~~~~~~f~~~~~l 207 (406)
T PRK08439 128 ISPFFIPSALVNMLGGFISIEHGLKGPNLSSVTACAAGTHAIIEAVKTIMLGGADKMLVVGAESAICPVGIGGFAAMKAL 207 (406)
T ss_pred cCchhcccccccHHHHHHHHHhCCCCCccccccHhHHHHHHHHHHHHHHHcCCCCEEEEecchhccCHHHHHHHHHhCcc
Confidence 35778888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred C-----CCCCCcccCCCCCceeCC
Q psy11966 81 S-----PTGTISPFDASGVGHRQP 99 (99)
Q Consensus 81 s-----~~~~~~pfd~~~~G~v~g 99 (99)
+ ++..|||||++++|+++|
T Consensus 208 s~~~~~p~~~~rpfd~~~~G~v~g 231 (406)
T PRK08439 208 STRNDDPKKASRPFDKDRDGFVMG 231 (406)
T ss_pred ccCCCCCccCcCCccCCCCcEEee
Confidence 8 456899999999999985
No 16
>PRK09116 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed
Probab=99.88 E-value=9.2e-23 Score=148.02 Aligned_cols=97 Identities=27% Similarity=0.299 Sum_probs=86.7
Q ss_pred CcccccCCCcchHHhHHHHHhCCCCCcceecccchHHHHHHHHHHHHHHcCCCCEEEEEecCCCCCHHHHHHHHHccCCC
Q psy11966 2 TQFVLVAPSTPRAAKSNSPIFALAGPCCTIDTACSSTLFGLHLAVGAIERGECDHAIIGGVNLTLKPATSLMYHKYNMLS 81 (99)
Q Consensus 2 ~~~~~~~~~~~~~~~~ia~~~~l~Gp~~tv~~acaS~~~Ai~~A~~~i~~G~~d~~l~gg~~~~~~~~~~~~~~~~~~ls 81 (99)
+++.++..+++.++++|++.|+++||+++++++|+|++.||..|+++|++|++|++||||+|. +++.....|..++.++
T Consensus 131 ~~~~~~~~~~n~~a~~is~~~~~~Gp~~ti~~acas~~~Al~~A~~~I~~G~~d~~lvgg~d~-~~~~~~~~f~~l~~~~ 209 (405)
T PRK09116 131 TATTYVRMMPHTTAVNVGLFFGLKGRVIPTSSACTSGSQGIGYAYEAIKYGYQTVMLAGGAEE-LCPTEAAVFDTLFATS 209 (405)
T ss_pred ChhhhhhhcccHHHHHHHHHhCCCCCcccccchhhhHHHHHHHHHHHHHcCCCCEEEEecchh-cChHHHHHHHHhhhhc
Confidence 455667778899999999999999999999999999999999999999999999999999998 6777777788877664
Q ss_pred -----CCCCCcccCCCCCceeCC
Q psy11966 82 -----PTGTISPFDASGVGHRQP 99 (99)
Q Consensus 82 -----~~~~~~pfd~~~~G~v~g 99 (99)
|+..|||||++++||++|
T Consensus 210 ~~~~~~~~~~rPfd~~~~G~v~g 232 (405)
T PRK09116 210 TRNDAPELTPRPFDANRDGLVIG 232 (405)
T ss_pred cCCCCCCCCCCCCcCCCCCEeee
Confidence 456899999999999986
No 17
>PLN02836 3-oxoacyl-[acyl-carrier-protein] synthase
Probab=99.88 E-value=1.6e-22 Score=147.89 Aligned_cols=99 Identities=23% Similarity=0.325 Sum_probs=91.5
Q ss_pred CCcccccCCCcchHHhHHHHHhCCCCCcceecccchHHHHHHHHHHHHHHcCCCCEEEEEecCCCCCHHHHHHHHHccCC
Q psy11966 1 MTQFVLVAPSTPRAAKSNSPIFALAGPCCTIDTACSSTLFGLHLAVGAIERGECDHAIIGGVNLTLKPATSLMYHKYNML 80 (99)
Q Consensus 1 ~~~~~~~~~~~~~~~~~ia~~~~l~Gp~~tv~~acaS~~~Ai~~A~~~i~~G~~d~~l~gg~~~~~~~~~~~~~~~~~~l 80 (99)
++|+.++.++.++++++|++.|+++||+++|+++|+|++.||..|+++|++|++|++||||+|..+++..+..|..++.+
T Consensus 150 ~~p~~~~~~~~n~~a~~is~~~gl~Gp~~tv~~acaSg~~Al~~A~~~I~~G~~d~~lvgg~~~~~~~~~~~~~~~~~~l 229 (437)
T PLN02836 150 LSPFFVPRILINMAAGHVSIRYGFQGPNHAAVTACATGAHSIGDAFRMIQFGDADVMVAGGTESSIDALSIAGFSRSRAL 229 (437)
T ss_pred CChhhhhhhcccHHHHHHHHHhCCCCceeceeChhHHHHHHHHHHHHHHHcCCCCEEEEccccccCCHHHHHHHHHhhhh
Confidence 35778888999999999999999999999999999999999999999999999999999999998999888889888877
Q ss_pred C------CCCCCcccCCCCCceeCC
Q psy11966 81 S------PTGTISPFDASGVGHRQP 99 (99)
Q Consensus 81 s------~~~~~~pfd~~~~G~v~g 99 (99)
+ +++.++|||++++|+++|
T Consensus 230 ~~~~~~~p~~~~~pfd~~~~G~~~g 254 (437)
T PLN02836 230 STKFNSCPTEASRPFDCDRDGFVIG 254 (437)
T ss_pred hcccCCCcccccCCcccCCCCeeee
Confidence 6 456899999999999875
No 18
>PRK06519 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed
Probab=99.87 E-value=6.8e-22 Score=143.32 Aligned_cols=98 Identities=21% Similarity=0.308 Sum_probs=90.3
Q ss_pred CCcccccCCCcchHHhHHHHHhCCCCCcceecccchHHHHHHHHHHHHHHcCCCCEEEEEecCCCCCHHHHHHHHHccCC
Q psy11966 1 MTQFVLVAPSTPRAAKSNSPIFALAGPCCTIDTACSSTLFGLHLAVGAIERGECDHAIIGGVNLTLKPATSLMYHKYNML 80 (99)
Q Consensus 1 ~~~~~~~~~~~~~~~~~ia~~~~l~Gp~~tv~~acaS~~~Ai~~A~~~i~~G~~d~~l~gg~~~~~~~~~~~~~~~~~~l 80 (99)
++|+.++.++.|.++++|++.|+++||+++++++|+|++.||.+|+++|++|++|++||||+|..+++..+..|+.++.+
T Consensus 141 ~~p~~~~~~~~n~~a~~is~~~gl~Gp~~ti~~acaSg~~Ai~~A~~~I~~G~~d~~lvGG~d~~~~~~~~~~~~~~~~l 220 (398)
T PRK06519 141 LRPTLFLAQLSNLLAGNISIVHKVTGSSRTFMGEESAGVSAIEIAFARIASGQSDHALVGGAYNAERPDMLLLYELGGLL 220 (398)
T ss_pred cChhhhhhhhhhHHHHHHHHHhCCCCccccccCCccHHHHHHHHHHHHHHcCCCCEEEEeeeccccCHHHHHHHHHcCcc
Confidence 36788999999999999999999999999999999999999999999999999999999999998999999999999999
Q ss_pred CCCCCCcc-cCC---CCCceeCC
Q psy11966 81 SPTGTISP-FDA---SGVGHRQP 99 (99)
Q Consensus 81 s~~~~~~p-fd~---~~~G~v~g 99 (99)
+.+ .++| ||+ +|+||++|
T Consensus 221 s~~-~~~p~~d~~~~~r~G~v~G 242 (398)
T PRK06519 221 LKG-GWAPVWSRGGEDGGGFILG 242 (398)
T ss_pred CCC-CCCchhccCccCCCCeeee
Confidence 864 5566 676 69999986
No 19
>cd00828 elong_cond_enzymes "elongating" condensing enzymes are a subclass of decarboxylating condensing enzymes, including beta-ketoacyl [ACP] synthase, type I and II and polyketide synthases.They are characterized by the utlization of acyl carrier protein (ACP) thioesters as primer substrates, as well as the nature of their active site residues.
Probab=99.85 E-value=3.5e-21 Score=139.05 Aligned_cols=97 Identities=27% Similarity=0.316 Sum_probs=89.0
Q ss_pred CcccccCCCc--chHHhHHHHHhCC-CCCcceecccchHHHHHHHHHHHHHHcCCCCEEEEEecCCCCCHHHHHHHHHcc
Q psy11966 2 TQFVLVAPST--PRAAKSNSPIFAL-AGPCCTIDTACSSTLFGLHLAVGAIERGECDHAIIGGVNLTLKPATSLMYHKYN 78 (99)
Q Consensus 2 ~~~~~~~~~~--~~~~~~ia~~~~l-~Gp~~tv~~acaS~~~Ai~~A~~~i~~G~~d~~l~gg~~~~~~~~~~~~~~~~~ 78 (99)
+|+..+..+. +.++++|++.|++ +||+++++++|+|++.||.+|+++|++|++|++||||+|... +..+..|..++
T Consensus 126 ~~~~~~~~~~~~~~~a~~is~~~gl~~Gp~~tv~~aCaS~~~Al~~A~~~I~~G~~d~~lvgg~d~~~-~~~~~~f~~~~ 204 (407)
T cd00828 126 NPYVSPKWMLSPNTVAGWVNILLLSSHGPIKTPVGACATALEALDLAVEAIRSGKADIVVVGGVEDPL-EEGLSGFANMG 204 (407)
T ss_pred CCcccchhccccchHHHHHHHHhCcCCCCCcCcccHHHHHHHHHHHHHHHHHcCCCCEEEEccccccC-hHHHHHHHHcC
Confidence 4566677777 9999999999999 999999999999999999999999999999999999999977 88888999999
Q ss_pred CCCCC-----CCCcccCCCCCceeCC
Q psy11966 79 MLSPT-----GTISPFDASGVGHRQP 99 (99)
Q Consensus 79 ~ls~~-----~~~~pfd~~~~G~v~g 99 (99)
.++.+ ..++|||++++|+++|
T Consensus 205 ~ls~~~~~~~~~~~pfd~~~~G~~~g 230 (407)
T cd00828 205 ALSTAEEEPEEMSRPFDETRDGFVEA 230 (407)
T ss_pred CCCCCCCCCCcccCCCcCCCCcEEee
Confidence 99854 5899999999999975
No 20
>PRK07314 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed
Probab=99.85 E-value=3.9e-21 Score=139.12 Aligned_cols=98 Identities=23% Similarity=0.301 Sum_probs=89.7
Q ss_pred CcccccCCCcchHHhHHHHHhCCCCCcceecccchHHHHHHHHHHHHHHcCCCCEEEEEecCCCCCHHHHHHHHHccCCC
Q psy11966 2 TQFVLVAPSTPRAAKSNSPIFALAGPCCTIDTACSSTLFGLHLAVGAIERGECDHAIIGGVNLTLKPATSLMYHKYNMLS 81 (99)
Q Consensus 2 ~~~~~~~~~~~~~~~~ia~~~~l~Gp~~tv~~acaS~~~Ai~~A~~~i~~G~~d~~l~gg~~~~~~~~~~~~~~~~~~ls 81 (99)
+|+.+++.+.+..++++++.||++||+++++++|+|++.||.+|+++|++|++|++||||+|.++++.....|..++.++
T Consensus 129 ~~~~~~~~~~~~~a~~is~~~gl~Gp~~tv~~acaSgl~Al~~A~~~I~~G~~d~vlvgg~~~~~~~~~~~~~~~~~~ls 208 (411)
T PRK07314 129 SPFFVPMAIINMAAGHVSIRYGAKGPNHSIVTACATGAHAIGDAARLIAYGDADVMVAGGAEAAITPLGIAGFAAARALS 208 (411)
T ss_pred ChhhhhhhcchHHHHHHHHHhCCCCccccchhhhHHHHHHHHHHHHHHhcCCCCEEEEeeecccCCHHHHHHHHHhcccc
Confidence 35667778889999999999999999999999999999999999999999999999999999999998888898888876
Q ss_pred C-----CCCCcccCCCCCceeCC
Q psy11966 82 P-----TGTISPFDASGVGHRQP 99 (99)
Q Consensus 82 ~-----~~~~~pfd~~~~G~v~g 99 (99)
. +..++|||+++||+++|
T Consensus 209 ~~~~~p~~~~~pfd~~~dG~~~g 231 (411)
T PRK07314 209 TRNDDPERASRPFDKDRDGFVMG 231 (411)
T ss_pred CCCCCCCcCcCCCcCCCCCEeEE
Confidence 3 56899999999999875
No 21
>PRK07103 polyketide beta-ketoacyl:acyl carrier protein synthase; Validated
Probab=99.85 E-value=4.1e-21 Score=139.49 Aligned_cols=98 Identities=17% Similarity=0.168 Sum_probs=88.6
Q ss_pred CcccccCCCcchHHhHHHHHhCCCCCcceecccchHHHHHHHHHHHHHHcCCCCEEEEEecCCCCCHHHHHHHHHccCCC
Q psy11966 2 TQFVLVAPSTPRAAKSNSPIFALAGPCCTIDTACSSTLFGLHLAVGAIERGECDHAIIGGVNLTLKPATSLMYHKYNMLS 81 (99)
Q Consensus 2 ~~~~~~~~~~~~~~~~ia~~~~l~Gp~~tv~~acaS~~~Ai~~A~~~i~~G~~d~~l~gg~~~~~~~~~~~~~~~~~~ls 81 (99)
+|+.....+.+.++++|++.||++||+++++++|+|++.||..|+++|++|++|++||+|++..+++.....|..++.++
T Consensus 134 ~p~~~~~~~~~~~a~~ia~~lgl~G~~~tv~~acas~~~Al~~A~~~I~~G~~d~~lv~g~~~~~~~~~~~~~~~~~~l~ 213 (410)
T PRK07103 134 RPSYGLSFMDTDLVGLCSEQFGIRGEGFTVGGASASGQLAVIQAARLVQSGSVDACIAVGALMDLSYWECQALRSLGAMG 213 (410)
T ss_pred ChhhhhhhcchHHHHHHHHHhCCCCCcccccchhHHHHHHHHHHHHHHHcCCCCEEEEecccccCCHHHHHHHHHccccc
Confidence 34555666778899999999999999999999999999999999999999999999999999889999999999988875
Q ss_pred -------CCCCCcccCCCCCceeCC
Q psy11966 82 -------PTGTISPFDASGVGHRQP 99 (99)
Q Consensus 82 -------~~~~~~pfd~~~~G~v~g 99 (99)
|+..|||||++++|+++|
T Consensus 214 ~~~~~~~p~~~~rPfd~~~dG~v~g 238 (410)
T PRK07103 214 SDRFADEPEAACRPFDQDRDGFIYG 238 (410)
T ss_pred cCccCCCcccCcCCCCCCCCCeeEe
Confidence 456899999999999986
No 22
>PRK06501 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed
Probab=99.84 E-value=1.2e-20 Score=137.73 Aligned_cols=93 Identities=24% Similarity=0.293 Sum_probs=85.5
Q ss_pred cCCCcchHHhHHHHHhCCCCCcceecccchHHHHHHHHHHHHHHcCCCCEEEEEecCCCCCHHHHHHHHHccCCC-----
Q psy11966 7 VAPSTPRAAKSNSPIFALAGPCCTIDTACSSTLFGLHLAVGAIERGECDHAIIGGVNLTLKPATSLMYHKYNMLS----- 81 (99)
Q Consensus 7 ~~~~~~~~~~~ia~~~~l~Gp~~tv~~acaS~~~Ai~~A~~~i~~G~~d~~l~gg~~~~~~~~~~~~~~~~~~ls----- 81 (99)
.....+..+++|++.|+++||+++++++|+|++.||.+|+++|++|++|++||+|+|..+++..+..|..++.++
T Consensus 147 ~~~~~~~~a~~i~~~~gl~G~~~~i~~aCaS~~~Al~~A~~~I~~G~~d~vlvgG~d~~~~~~~~~~~~~~~~ls~~~~~ 226 (425)
T PRK06501 147 ERFQFGSIADRLADRFGTRGLPISLSTACASGATAIQLGVEAIRRGETDRALCIATDGSVSAEALIRFSLLSALSTQNDP 226 (425)
T ss_pred hhhcccHHHHHHHHHhCCCCCceeecCccHHHHHHHHHHHHHHHcCCCCEEEEeeecccCCHHHHHHHHHhhccccCCCC
Confidence 344566789999999999999999999999999999999999999999999999999989999999999988887
Q ss_pred CCCCCcccCCCCCceeCC
Q psy11966 82 PTGTISPFDASGVGHRQP 99 (99)
Q Consensus 82 ~~~~~~pfd~~~~G~v~g 99 (99)
+++.+||||++++|+++|
T Consensus 227 ~~~~~rpfd~~r~G~v~G 244 (425)
T PRK06501 227 PEKASKPFSKDRDGFVMA 244 (425)
T ss_pred CCcccCCCCCCCCCeeee
Confidence 456899999999999875
No 23
>TIGR03150 fabF beta-ketoacyl-acyl-carrier-protein synthase II. FabB sequences should fall well below the noise cutoff of this model.
Probab=99.84 E-value=2.1e-20 Score=134.83 Aligned_cols=98 Identities=24% Similarity=0.337 Sum_probs=89.6
Q ss_pred CcccccCCCcchHHhHHHHHhCCCCCcceecccchHHHHHHHHHHHHHHcCCCCEEEEEecCCCCCHHHHHHHHHccCCC
Q psy11966 2 TQFVLVAPSTPRAAKSNSPIFALAGPCCTIDTACSSTLFGLHLAVGAIERGECDHAIIGGVNLTLKPATSLMYHKYNMLS 81 (99)
Q Consensus 2 ~~~~~~~~~~~~~~~~ia~~~~l~Gp~~tv~~acaS~~~Ai~~A~~~i~~G~~d~~l~gg~~~~~~~~~~~~~~~~~~ls 81 (99)
+|+.+.+.+.+.++++|++.|+++||+++++++|+|++.||.+|+++|++|++|++||||+|.++++.....|..++.++
T Consensus 128 ~~~~~~~~~~~~~a~~is~~~gl~g~~~~v~~acaSg~~Al~~A~~~I~~G~~d~~lvgg~e~~~~~~~~~~~~~~~~ls 207 (407)
T TIGR03150 128 SPFFIPMSIINMAAGQISIRYGAKGPNHAVVTACATGTHAIGDAFRLIQRGDADVMIAGGAEAAITPLGIAGFAAMKALS 207 (407)
T ss_pred ChhhhhcccccHHHHHHHHHhCCCCcccccccHHHHHHHHHHHHHHHHhcCCCCEEEEecccCcCCHHHHHHHHHhCccc
Confidence 45667788889999999999999999999999999999999999999999999999999999999998888888888887
Q ss_pred C-----CCCCcccCCCCCceeCC
Q psy11966 82 P-----TGTISPFDASGVGHRQP 99 (99)
Q Consensus 82 ~-----~~~~~pfd~~~~G~v~g 99 (99)
. +..++|||++++|+++|
T Consensus 208 ~~~~~~~~~~~pfd~~~~g~~~g 230 (407)
T TIGR03150 208 TRNDDPEKASRPFDKDRDGFVMG 230 (407)
T ss_pred CCCCCCCcCCCCCcCCCCcEEEe
Confidence 4 45699999999999875
No 24
>smart00825 PKS_KS Beta-ketoacyl synthase. The structure of beta-ketoacyl synthase is similar to that of the thiolase family and also chalcone synthase. The active site of beta-ketoacyl synthase is located between the N and C-terminal domains.
Probab=99.81 E-value=1.1e-19 Score=131.80 Aligned_cols=98 Identities=41% Similarity=0.642 Sum_probs=91.2
Q ss_pred CcccccCCCcchHHhHHHHHhCCCCCcceecccchHHHHHHHHHHHHHHcCCCCEEEEEecCCCCCHHHHHHHHHccCCC
Q psy11966 2 TQFVLVAPSTPRAAKSNSPIFALAGPCCTIDTACSSTLFGLHLAVGAIERGECDHAIIGGVNLTLKPATSLMYHKYNMLS 81 (99)
Q Consensus 2 ~~~~~~~~~~~~~~~~ia~~~~l~Gp~~tv~~acaS~~~Ai~~A~~~i~~G~~d~~l~gg~~~~~~~~~~~~~~~~~~ls 81 (99)
+++.+.+.+.+..+.+|++.||++||.++++++|+|++.||..|+++|++|++|++||+|+|...++..+..|..++.++
T Consensus 137 ~~~~~~~~~~~~~a~~i~~~lgl~g~~~~v~~acasg~~Al~~A~~~I~~G~~d~vlvgg~~~~~~~~~~~~~~~~~~l~ 216 (424)
T smart00825 137 EGYAATGTARSFIANRISYFFDLRGPSVTVDTACSSSLVALHLACQSLRSGECDMALAGGVNLILSPDTFVGFSRAGMLS 216 (424)
T ss_pred chhhhccchhHHHHHHHHHHhCCCCCccccccHhHHHHHHHHHHHHHHHcCCCCeeEEeeeeecCCHHHHHHHhhcCCCC
Confidence 34566677788899999999999999999999999999999999999999999999999999989999999999999999
Q ss_pred CCCCCcccCCCCCceeCC
Q psy11966 82 PTGTISPFDASGVGHRQP 99 (99)
Q Consensus 82 ~~~~~~pfd~~~~G~v~g 99 (99)
+++.++|||++++|+++|
T Consensus 217 ~~~~~~pf~~~~~g~~~g 234 (424)
T smart00825 217 PDGRCKTFDADADGYVRG 234 (424)
T ss_pred CCCCCCCCCCCCCccccc
Confidence 988999999999999875
No 25
>cd00834 KAS_I_II Beta-ketoacyl-acyl carrier protein (ACP) synthase (KAS), type I and II. KASs are responsible for the elongation steps in fatty acid biosynthesis. KASIII catalyses the initial condensation and KAS I and II catalyze further elongation steps by Claisen condensation of malonyl-acyl carrier protein (ACP) with acyl-ACP.
Probab=99.81 E-value=1.2e-19 Score=130.76 Aligned_cols=98 Identities=27% Similarity=0.331 Sum_probs=90.1
Q ss_pred CcccccCCCcchHHhHHHHHhCCCCCcceecccchHHHHHHHHHHHHHHcCCCCEEEEEecCCCCCHHHHHHHHHccCCC
Q psy11966 2 TQFVLVAPSTPRAAKSNSPIFALAGPCCTIDTACSSTLFGLHLAVGAIERGECDHAIIGGVNLTLKPATSLMYHKYNMLS 81 (99)
Q Consensus 2 ~~~~~~~~~~~~~~~~ia~~~~l~Gp~~tv~~acaS~~~Ai~~A~~~i~~G~~d~~l~gg~~~~~~~~~~~~~~~~~~ls 81 (99)
+|+.+.....+..+++|++.||++||+++++.+|+|++.||..|+++|++|++|.+||+|+|...++..+..|..++.++
T Consensus 128 ~~~~~~~~~~~~~a~~ia~~lgl~g~~~~v~~acas~~~Al~~A~~~i~~G~~d~aLvgg~d~~~~p~~~~~~~~~~~l~ 207 (406)
T cd00834 128 SPFFVPMALPNMAAGQVAIRLGLRGPNYTVSTACASGAHAIGDAARLIRLGRADVVIAGGAEALITPLTLAGFAALRALS 207 (406)
T ss_pred ChhHHhhhcccHHHHHHHHHhCCCCcccccchHHHHHHHHHHHHHHHHHcCCCCEEEEcCcccccCHHHHHHHHhcCCcC
Confidence 45666777778899999999999999999999999999999999999999999999999999988899999999999998
Q ss_pred CC-----CCCcccCCCCCceeCC
Q psy11966 82 PT-----GTISPFDASGVGHRQP 99 (99)
Q Consensus 82 ~~-----~~~~pfd~~~~G~v~g 99 (99)
.+ ..++|||.+++|+++|
T Consensus 208 ~~~~~p~~~~~pf~~~~~g~~~g 230 (406)
T cd00834 208 TRNDDPEKASRPFDKDRDGFVLG 230 (406)
T ss_pred CCCCCCccCCCCCCCCCCCEeee
Confidence 65 4789999999999875
No 26
>cd00833 PKS polyketide synthases (PKSs) polymerize simple fatty acids into a large variety of different products, called polyketides, by successive decarboxylating Claisen condensations. PKSs can be divided into 2 groups, modular type I PKSs consisting of one or more large multifunctional proteins and iterative type II PKSs, complexes of several monofunctional subunits.
Probab=99.81 E-value=2.3e-19 Score=129.62 Aligned_cols=98 Identities=43% Similarity=0.669 Sum_probs=91.8
Q ss_pred CcccccCCCcchHHhHHHHHhCCCCCcceecccchHHHHHHHHHHHHHHcCCCCEEEEEecCCCCCHHHHHHHHHccCCC
Q psy11966 2 TQFVLVAPSTPRAAKSNSPIFALAGPCCTIDTACSSTLFGLHLAVGAIERGECDHAIIGGVNLTLKPATSLMYHKYNMLS 81 (99)
Q Consensus 2 ~~~~~~~~~~~~~~~~ia~~~~l~Gp~~tv~~acaS~~~Ai~~A~~~i~~G~~d~~l~gg~~~~~~~~~~~~~~~~~~ls 81 (99)
+++.+.+...+..+.++++.+|++||.++++++|+|++.||..|+++|++|++|++||+|+|.+.++.....+..++.++
T Consensus 137 ~~~~~~~~~~~~~a~~i~~~~gl~g~~~~v~~acas~~~Al~~A~~~I~~G~~d~~lvgg~~~~~~~~~~~~~~~~~~l~ 216 (421)
T cd00833 137 DAYAATGTSRAFLANRISYFFDLRGPSLTVDTACSSSLVALHLACQSLRSGECDLALVGGVNLILSPDMFVGFSKAGMLS 216 (421)
T ss_pred CcccccCcchHHHHHHHHHHcCCCCCceeeccHhHHHHHHHHHHHHHHHcCCCCeeEEeeeeccCCHHHHHHHhhCCCCC
Confidence 56677777888899999999999999999999999999999999999999999999999999988898899999999999
Q ss_pred CCCCCcccCCCCCceeCC
Q psy11966 82 PTGTISPFDASGVGHRQP 99 (99)
Q Consensus 82 ~~~~~~pfd~~~~G~v~g 99 (99)
++..++|||.+++|+++|
T Consensus 217 ~~~~~~pf~~~~~g~~~g 234 (421)
T cd00833 217 PDGRCRPFDADADGYVRG 234 (421)
T ss_pred CCCCCCCCCCCCCCeeee
Confidence 888899999999999875
No 27
>PRK09185 3-oxoacyl-(acyl carrier protein) synthase I; Reviewed
Probab=99.79 E-value=7.2e-19 Score=127.16 Aligned_cols=95 Identities=32% Similarity=0.402 Sum_probs=85.5
Q ss_pred cccccCCCcchHHhHHHHHhCCCCCcceecccchHHHHHHHHHHHHHHcCCCCEEEEEecCCCCCHHHHHHHHHccCCCC
Q psy11966 3 QFVLVAPSTPRAAKSNSPIFALAGPCCTIDTACSSTLFGLHLAVGAIERGECDHAIIGGVNLTLKPATSLMYHKYNMLSP 82 (99)
Q Consensus 3 ~~~~~~~~~~~~~~~ia~~~~l~Gp~~tv~~acaS~~~Ai~~A~~~i~~G~~d~~l~gg~~~~~~~~~~~~~~~~~~ls~ 82 (99)
++.++.+..+.++++|++.||++||.++++++|+|++.||.+|+++|++|++|.+||+|+|. .++.....|..++.++.
T Consensus 128 ~~~~~~~~~~~~a~~ia~~lgl~Gp~~~i~~acas~~~Al~~A~~~I~~G~~d~vlvgg~d~-~~~~~~~~~~~~~~l~~ 206 (392)
T PRK09185 128 DYHYAQQELGSLADFLRAYLGLSGPAYTISTACSSSAKVFASARRLLEAGLCDAAIVGGVDS-LCRLTLNGFNSLESLSP 206 (392)
T ss_pred chhhhhhcccHHHHHHHHHhCCCCCcccccChhHHHHHHHHHHHHHHHcCCCCEEEEeeccc-cChHHHHHHHhccccCC
Confidence 45566677888999999999999999999999999999999999999999999999999997 56677788888888875
Q ss_pred CCCCcccCCCCCceeCC
Q psy11966 83 TGTISPFDASGVGHRQP 99 (99)
Q Consensus 83 ~~~~~pfd~~~~G~v~g 99 (99)
+.++|||++++|+++|
T Consensus 207 -~~~~Pfd~~~~G~~~g 222 (392)
T PRK09185 207 -QPCRPFSANRDGINIG 222 (392)
T ss_pred -CccCCCcCCCCcccee
Confidence 5899999999999875
No 28
>KOG1202|consensus
Probab=99.77 E-value=7.9e-20 Score=143.40 Aligned_cols=98 Identities=39% Similarity=0.642 Sum_probs=94.2
Q ss_pred CcccccCCCcchHHhHHHHHhCCCCCcceecccchHHHHHHHHHHHHHHcCCCCEEEEEecCCCCCHHHHHHHHHccCCC
Q psy11966 2 TQFVLVAPSTPRAAKSNSPIFALAGPCCTIDTACSSTLFGLHLAVGAIERGECDHAIIGGVNLTLKPATSLMYHKYNMLS 81 (99)
Q Consensus 2 ~~~~~~~~~~~~~~~~ia~~~~l~Gp~~tv~~acaS~~~Ai~~A~~~i~~G~~d~~l~gg~~~~~~~~~~~~~~~~~~ls 81 (99)
+.|.+++...++.++||++.|+++||++.++++|+|++.|+..|++.++.|+||.+||+|++..+.|.+..+|.++|.+|
T Consensus 137 ~Gy~mtgc~raMfaNRiSytFDfqGPS~s~DtacsSsl~al~~a~~~~r~gqcd~AiVaG~~liLkPt~slQFlRLgmls 216 (2376)
T KOG1202|consen 137 NGYSMTGCVRAMFANRISYTFDFQGPSFSVDTACSSSLMALQNAFQDIRSGQCDAAIVAGANLILKPTTSLQFLRLGMLS 216 (2376)
T ss_pred cceeecccHHHHhhcceeEEEeccCCchhhhhhhHHHHHHHHHHHHhhhccCCchhhhcccceEeccchhhHHHHhcCcC
Confidence 45777888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcccCCCCCceeCC
Q psy11966 82 PTGTISPFDASGVGHRQP 99 (99)
Q Consensus 82 ~~~~~~pfd~~~~G~v~g 99 (99)
+++.|+.||+..|||+++
T Consensus 217 ~dGsCkaFDeagnGY~Rs 234 (2376)
T KOG1202|consen 217 PDGSCKAFDEAGNGYCRS 234 (2376)
T ss_pred CCCcccchhccCCceeec
Confidence 999999999999999874
No 29
>cd00825 decarbox_cond_enzymes decarboxylating condensing enzymes; Family of enzymes that catalyze the formation of a new carbon-carbon bond by a decarboxylating Claisen-like condensation reaction. Members are involved in the synthesis of fatty acids and polyketides, a diverse group of natural products. Both pathways are an iterative series of additions of small carbon units, usually acetate, to a nascent acyl group. There are 2 classes of decarboxylating condensing enzymes, which can be distinguished by sequence similarity, type of active site residues and type of primer units (acetyl CoA or acyl carrier protein (ACP) linked units).
Probab=99.66 E-value=8.3e-16 Score=107.94 Aligned_cols=98 Identities=22% Similarity=0.364 Sum_probs=85.2
Q ss_pred CcccccCCCcchHHhHHHHHhCCCCCcceecccchHHHHHHHHHHHHHHcCCCCEEEEEecCCCCCHHHHHHHHHccCCC
Q psy11966 2 TQFVLVAPSTPRAAKSNSPIFALAGPCCTIDTACSSTLFGLHLAVGAIERGECDHAIIGGVNLTLKPATSLMYHKYNMLS 81 (99)
Q Consensus 2 ~~~~~~~~~~~~~~~~ia~~~~l~Gp~~tv~~acaS~~~Ai~~A~~~i~~G~~d~~l~gg~~~~~~~~~~~~~~~~~~ls 81 (99)
+|+.+.+.+.+..+.+|++.++++||+++++.+|+|++.||.+|.++|++|++|.+||+++|....+.........+.+.
T Consensus 63 ~~~~~~~~~~~~~a~~ia~~lgl~g~~~~v~~~cas~~~al~~A~~~i~~g~~~~~Lv~~~d~~~~~~~~~~~~~~~~~~ 142 (332)
T cd00825 63 GPYVVTKAMFPGASGQIATPLGIHGPAYDVSAACAGSLHALSLAADAVQNGKQDIVLAGGSEELAAPMDCEFDAMGALST 142 (332)
T ss_pred CcchhhcccchHHHHHHHHHhCCCCCccccccHhHHHHHHHHHHHHHHHcCCCCEEEEeccccccCHHHHHHHhhccccC
Confidence 46667777788899999999999999999999999999999999999999999999999999977766554444455667
Q ss_pred CCCCCcccCCCCCceeCC
Q psy11966 82 PTGTISPFDASGVGHRQP 99 (99)
Q Consensus 82 ~~~~~~pfd~~~~G~v~g 99 (99)
+++.++|||+.++|+++|
T Consensus 143 ~~~~~~~~~~~~~g~~~g 160 (332)
T cd00825 143 PEKASRTFDAAADGFVFG 160 (332)
T ss_pred CCCCCCCCCCCCCCEEEE
Confidence 888899999999999864
No 30
>PRK06147 3-oxoacyl-(acyl carrier protein) synthase; Validated
Probab=99.27 E-value=3.4e-11 Score=86.20 Aligned_cols=80 Identities=20% Similarity=0.219 Sum_probs=66.6
Q ss_pred hHHhHHHHHhCC--CCCcceecccchHHHHHHHHHHHHHHcCCCCEEEEEecCCCCCHHHHHHHHHccCCCCCCCCcccC
Q psy11966 13 RAAKSNSPIFAL--AGPCCTIDTACSSTLFGLHLAVGAIERGECDHAIIGGVNLTLKPATSLMYHKYNMLSPTGTISPFD 90 (99)
Q Consensus 13 ~~~~~ia~~~~l--~Gp~~tv~~acaS~~~Ai~~A~~~i~~G~~d~~l~gg~~~~~~~~~~~~~~~~~~ls~~~~~~pfd 90 (99)
..+..++..+|+ ++|.++|+++|+|++.||..|+++|++|++|.+||||+|.+.++..+..|...+.+.. +
T Consensus 109 ~~~~~~~~~lG~~~~~~~~~i~~~casg~~Al~~A~~~i~~G~~~~~lvgg~d~~~~~~~~~~~~~~~~l~~-------~ 181 (348)
T PRK06147 109 RLLRELEARLGLRLEPGSAVIARGRVSGAVALAQARRLIAAGGCPRVLVAGVDSLLTGPTLAHYEARDRLLT-------S 181 (348)
T ss_pred HHHHHHHHHhCCCCCCCcccccccchHHHHHHHHHHHHHHcCCCCEEEEEeeccccCHHHHHHHHHhhccCC-------C
Confidence 345678888888 5688999999999999999999999999999999999999888777777776654432 1
Q ss_pred CCCCceeCC
Q psy11966 91 ASGVGHRQP 99 (99)
Q Consensus 91 ~~~~G~v~g 99 (99)
.+++||++|
T Consensus 182 ~~~~G~v~G 190 (348)
T PRK06147 182 QNSNGFIPG 190 (348)
T ss_pred CCCCceeee
Confidence 378999876
No 31
>PRK13359 beta-ketoadipyl CoA thiolase; Provisional
Probab=98.92 E-value=3.1e-09 Score=77.53 Aligned_cols=58 Identities=28% Similarity=0.383 Sum_probs=52.3
Q ss_pred chHHhHHHHHhCCCC--CcceecccchHHHHHHHHHHHHHHcCCCCEEEEEecCCCCCHH
Q psy11966 12 PRAAKSNSPIFALAG--PCCTIDTACSSTLFGLHLAVGAIERGECDHAIIGGVNLTLKPA 69 (99)
Q Consensus 12 ~~~~~~ia~~~~l~G--p~~tv~~acaS~~~Ai~~A~~~i~~G~~d~~l~gg~~~~~~~~ 69 (99)
..++-.++...|+.. |.++|+++|+||+.|+..|++.|++|+.|++|++|+|++...+
T Consensus 65 ~~~ar~~~l~~Gl~~~vp~~tV~~~CaSG~~Av~~A~~~I~sG~~divlagGvEsmS~~p 124 (400)
T PRK13359 65 RNVARMSLLLAGLPHGVPGSTINRLCGSGMDAVGVAARAIKSGEAALMIAGGVESMSRAP 124 (400)
T ss_pred ccHHHHHHHHcCCCCCCceEEEeccchhHHHHHHHHHHHHHcCCCCEEEEeeeeccCCCc
Confidence 456668888999975 9999999999999999999999999999999999999977644
No 32
>PF00108 Thiolase_N: Thiolase, N-terminal domain; InterPro: IPR020616 Two different types of thiolase [, , ] are found both in eukaryotes and in prokaryotes: acetoacetyl-CoA thiolase (2.3.1.9 from EC) and 3-ketoacyl-CoA thiolase (2.3.1.16 from EC). 3-ketoacyl-CoA thiolase (also called thiolase I) has a broad chain-length specificity for its substrates and is involved in degradative pathways such as fatty acid beta-oxidation. Acetoacetyl-CoA thiolase (also called thiolase II) is specific for the thiolysis of acetoacetyl-CoA and involved in biosynthetic pathways such as poly beta-hydroxybutyrate synthesis or steroid biogenesis. In eukaryotes, there are two forms of 3-ketoacyl-CoA thiolase: one located in the mitochondrion and the other in peroxisomes. There are two conserved cysteine residues important for thiolase activity. The first located in the N-terminal section of the enzymes is involved in the formation of an acyl-enzyme intermediate; the second located at the C-terminal extremity is the active site base involved in deprotonation in the condensation reaction. Mammalian nonspecific lipid-transfer protein (nsL-TP) (also known as sterol carrier protein 2) is a protein which seems to exist in two different forms: a 14 Kd protein (SCP-2) and a larger 58 Kd protein (SCP-x). The former is found in the cytoplasm or the mitochondria and is involved in lipid transport; the latter is found in peroxisomes. The C-terminal part of SCP-x is identical to SCP-2 while the N-terminal portion is evolutionary related to thiolases [].; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups, 0008152 metabolic process; PDB: 1PXT_B 1AFW_B 1WL4_A 1WL5_A 4E1L_B 1WDK_D 1WDM_D 2D3T_D 1WDL_C 2WUA_B ....
Probab=98.92 E-value=3.8e-09 Score=73.25 Aligned_cols=59 Identities=32% Similarity=0.477 Sum_probs=47.7
Q ss_pred chHHhHHHHHhCCC-C-CcceecccchHHHHHHHHHHHHHHcCCCCEEEEEecCCCCCHHH
Q psy11966 12 PRAAKSNSPIFALA-G-PCCTIDTACSSTLFGLHLAVGAIERGECDHAIIGGVNLTLKPAT 70 (99)
Q Consensus 12 ~~~~~~ia~~~~l~-G-p~~tv~~acaS~~~Ai~~A~~~i~~G~~d~~l~gg~~~~~~~~~ 70 (99)
..++-.++...|+. . |.++|+++|+||+.||.+|++.|++|+.|++|+||+|.+.+.+.
T Consensus 63 ~~~ar~~~l~aGl~~~vp~~~V~~~CaSG~~Av~~a~~~I~sG~~dvvlagGvE~mS~~p~ 123 (264)
T PF00108_consen 63 QNIARQAALAAGLPESVPATTVNRACASGLQAVHLAAMAIASGEADVVLAGGVESMSRVPM 123 (264)
T ss_dssp CHHHHHHHHHTTS-TTSEEEEEE-GGGHHHHHHHHHHHHHHTTS-SEEEEEEEEETTTSCE
T ss_pred hhhhhhhhhhcccccccceeeehhhhhHHHHHHHHhhhhhcCCCccEEEEecccccccccc
Confidence 34555666777773 3 99999999999999999999999999999999999999766543
No 33
>PRK07108 acetyl-CoA acetyltransferase; Provisional
Probab=98.89 E-value=5.2e-09 Score=76.15 Aligned_cols=56 Identities=29% Similarity=0.290 Sum_probs=51.2
Q ss_pred hHHhHHHHHhCCC--CCcceecccchHHHHHHHHHHHHHHcCCCCEEEEEecCCCCCH
Q psy11966 13 RAAKSNSPIFALA--GPCCTIDTACSSTLFGLHLAVGAIERGECDHAIIGGVNLTLKP 68 (99)
Q Consensus 13 ~~~~~ia~~~~l~--Gp~~tv~~acaS~~~Ai~~A~~~i~~G~~d~~l~gg~~~~~~~ 68 (99)
.++..++..+|+. -|+++|+++|+|++.|+..|+++|++|++|++|++|+|.+...
T Consensus 66 ~~a~~i~~~lGl~~~~p~~~V~~aCaSg~~Al~~A~~~I~sG~~d~vlagGvE~ms~~ 123 (392)
T PRK07108 66 NIARQIALRAGLPVTVPGMTVNRFCSSGLQTIALAAQRVIAGEGDVFVAGGVESISCV 123 (392)
T ss_pred HHHHHHHHHcCCCCCCceeeecchhhHHHHHHHHHHHHHHCCCCCEEEEEEEeccCCC
Confidence 4777888888986 6999999999999999999999999999999999999997654
No 34
>TIGR02430 pcaF beta-ketoadipyl CoA thiolase. Members of this family are designated beta-ketoadipyl CoA thiolase, an enzyme that acts at the end of pathways for the degradation of protocatechuate (from benzoate and related compounds) and of phenylacetic acid.
Probab=98.86 E-value=6.5e-09 Score=75.90 Aligned_cols=57 Identities=30% Similarity=0.430 Sum_probs=50.7
Q ss_pred hHHhHHHHHhCCCC--CcceecccchHHHHHHHHHHHHHHcCCCCEEEEEecCCCCCHH
Q psy11966 13 RAAKSNSPIFALAG--PCCTIDTACSSTLFGLHLAVGAIERGECDHAIIGGVNLTLKPA 69 (99)
Q Consensus 13 ~~~~~ia~~~~l~G--p~~tv~~acaS~~~Ai~~A~~~i~~G~~d~~l~gg~~~~~~~~ 69 (99)
.++-.++...|+.. |.++|+++|+||+.|+..|++.|++|+.|++|++|+|.+.+.+
T Consensus 65 ~~ar~~~~~~Gl~~~~p~~~V~~~CaSG~~Ai~~a~~~I~sG~~d~~la~G~E~ms~~p 123 (400)
T TIGR02430 65 NVARMAALLAGLPVSVPGTTVNRLCGSGLDAIGMAARAIKAGEADLLIAGGVESMSRAP 123 (400)
T ss_pred cHHHHHHHHcCCCCCCceEEeechhhhHHHHHHHHHHHHHCCCCCEEEEeccccccCCc
Confidence 34555999999973 9999999999999999999999999999999999999976543
No 35
>PRK09050 beta-ketoadipyl CoA thiolase; Validated
Probab=98.85 E-value=6.5e-09 Score=75.89 Aligned_cols=56 Identities=29% Similarity=0.402 Sum_probs=49.9
Q ss_pred HHhHHHHHhCCCC--CcceecccchHHHHHHHHHHHHHHcCCCCEEEEEecCCCCCHH
Q psy11966 14 AAKSNSPIFALAG--PCCTIDTACSSTLFGLHLAVGAIERGECDHAIIGGVNLTLKPA 69 (99)
Q Consensus 14 ~~~~ia~~~~l~G--p~~tv~~acaS~~~Ai~~A~~~i~~G~~d~~l~gg~~~~~~~~ 69 (99)
++-.++...|+.. |.++|+++|+||+.|+..|++.|++|++|++||+|+|.+...+
T Consensus 67 ~ar~~~~~~Gl~~~vP~~tV~~aCaSG~~Ai~~A~~~I~sG~~dvvlagGvEsmS~~p 124 (401)
T PRK09050 67 VARMSALLAGLPVSVPGTTINRLCGSGMDAVGTAARAIKAGEAELMIAGGVESMSRAP 124 (401)
T ss_pred HHHHHHHHcCCCCCCceEEEecccccHHHHHHHHHHHHHCCCCCEEEEecccccccCc
Confidence 4445889999943 9999999999999999999999999999999999999976543
No 36
>PRK08963 fadI 3-ketoacyl-CoA thiolase; Reviewed
Probab=98.85 E-value=7.2e-09 Score=76.17 Aligned_cols=56 Identities=16% Similarity=0.216 Sum_probs=49.8
Q ss_pred HHhHHHHHhCCC-C-CcceecccchHHHHHHHHHHHHHHcCCCCEEEEEecCCCCCHH
Q psy11966 14 AAKSNSPIFALA-G-PCCTIDTACSSTLFGLHLAVGAIERGECDHAIIGGVNLTLKPA 69 (99)
Q Consensus 14 ~~~~ia~~~~l~-G-p~~tv~~acaS~~~Ai~~A~~~i~~G~~d~~l~gg~~~~~~~~ 69 (99)
++..++...|+. + |.++|+++|+||+.|+..|++.|++|+.|++||+|+|.+....
T Consensus 68 ~ar~~a~~aGl~~~~P~~tV~~aCaSG~~Ai~~Aa~~I~sG~~dvvLvgG~Esms~~~ 125 (428)
T PRK08963 68 IAREIVLGTGMNVHTDAYSVSRACATSFQAVANVAESIMAGTIDIGIAGGADSSSVLP 125 (428)
T ss_pred HHHHHHHHCCCCCCCcceeehhhhHHHHHHHHHHHHHHHCCCCCEEEEecccccCCCc
Confidence 444588899996 3 9999999999999999999999999999999999999876543
No 37
>cd00327 cond_enzymes Condensing enzymes; Family of enzymes that catalyze a (decarboxylating or non-decarboxylating) Claisen-like condensation reaction. Members are share strong structural similarity, and are involved in the synthesis and degradation of fatty acids, and the production of polyketides, a diverse group of natural products.
Probab=98.84 E-value=1.1e-08 Score=69.47 Aligned_cols=54 Identities=28% Similarity=0.485 Sum_probs=51.2
Q ss_pred cchHHhHHHHHhCC-CCCcceecccchHHHHHHHHHHHHHHcCCCCEEEEEecCC
Q psy11966 11 TPRAAKSNSPIFAL-AGPCCTIDTACSSTLFGLHLAVGAIERGECDHAIIGGVNL 64 (99)
Q Consensus 11 ~~~~~~~ia~~~~l-~Gp~~tv~~acaS~~~Ai~~A~~~i~~G~~d~~l~gg~~~ 64 (99)
....+.+|+..+|+ ++|.++++.+|+|++.||..|.++|++|+.|.+||+++|.
T Consensus 43 ~~~~a~~i~~~lg~~~~~~~~i~~~C~s~~~al~~A~~~i~~g~~~~~lv~~~e~ 97 (254)
T cd00327 43 FSGAAGQLAYHLGISGGPAYSVNQACATGLTALALAVQQVQNGKADIVLAGGSEE 97 (254)
T ss_pred ccHHHHHHHHHhCCCCCCcceeccHhHHHHHHHHHHHHHHHCCCCCEEEEEecce
Confidence 35677899999999 8999999999999999999999999999999999999987
No 38
>PRK07850 acetyl-CoA acetyltransferase; Provisional
Probab=98.83 E-value=9.4e-09 Score=74.72 Aligned_cols=55 Identities=27% Similarity=0.315 Sum_probs=47.7
Q ss_pred HhHHHHHhCCC-C-CcceecccchHHHHHHHHHHHHHHcCCCCEEEEEecCCCCCHH
Q psy11966 15 AKSNSPIFALA-G-PCCTIDTACSSTLFGLHLAVGAIERGECDHAIIGGVNLTLKPA 69 (99)
Q Consensus 15 ~~~ia~~~~l~-G-p~~tv~~acaS~~~Ai~~A~~~i~~G~~d~~l~gg~~~~~~~~ 69 (99)
+-.++...|+. + |.++|+++|+||+.|+..|++.|++|+.|++|++|+|++.+.+
T Consensus 67 ar~~~l~~Gl~~~~p~~tV~~~CaSG~~A~~~A~~~I~sG~~dvvla~G~E~mS~~p 123 (387)
T PRK07850 67 TRTAWLHAGLPYHVGATTIDCQCGSAQQANHLVAGLIAAGAIDVGIACGVEAMSRVP 123 (387)
T ss_pred HHHHHHhCCCCCCCceEEEecccccHHHHHHHHHHHHHCCCCCEEEEEeEecCCCCc
Confidence 33455668886 3 8999999999999999999999999999999999999976543
No 39
>COG0183 PaaJ Acetyl-CoA acetyltransferase [Lipid metabolism]
Probab=98.80 E-value=1.6e-08 Score=73.67 Aligned_cols=60 Identities=32% Similarity=0.485 Sum_probs=54.2
Q ss_pred cchHHhHHHHHhCCCC--CcceecccchHHHHHHHHHHHHHHcCCCCEEEEEecCCCCCHHH
Q psy11966 11 TPRAAKSNSPIFALAG--PCCTIDTACSSTLFGLHLAVGAIERGECDHAIIGGVNLTLKPAT 70 (99)
Q Consensus 11 ~~~~~~~ia~~~~l~G--p~~tv~~acaS~~~Ai~~A~~~i~~G~~d~~l~gg~~~~~~~~~ 70 (99)
...++-.++...|+.. |.++|+.+|+||+.|+..|++.|++|+.|++|++|+|.+.+.+.
T Consensus 66 ~~~~ar~~a~~aGl~~~~p~~~V~~~c~SG~~Av~~A~~~I~sG~~dvvlagG~E~mS~~~~ 127 (392)
T COG0183 66 GQNIARQAALAAGLPGSVPAVTVNRACASGLAAVRLAAQAIASGEADVVLAGGVEKMSDAPM 127 (392)
T ss_pred cccHHHHHHHHcCCCCCCCceEEeccchhHHHHHHHHHHHHHCCCCCEEEEEeeeeccCCCc
Confidence 3456668899999987 99999999999999999999999999999999999999877664
No 40
>PRK06816 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=98.79 E-value=3.1e-08 Score=71.63 Aligned_cols=85 Identities=12% Similarity=0.123 Sum_probs=65.2
Q ss_pred HhHHHHHhCCCC-CcceecccchHHHHHHHHHHHHHHcCCCCEEEEEecCCCCCHHHHHHHHH-ccCCC--CCCCCcccC
Q psy11966 15 AKSNSPIFALAG-PCCTIDTACSSTLFGLHLAVGAIERGECDHAIIGGVNLTLKPATSLMYHK-YNMLS--PTGTISPFD 90 (99)
Q Consensus 15 ~~~ia~~~~l~G-p~~tv~~acaS~~~Ai~~A~~~i~~G~~d~~l~gg~~~~~~~~~~~~~~~-~~~ls--~~~~~~pfd 90 (99)
+..|...+|++. |.+.|+.+|+|++.||..|.+.|++|..|.+|++++|.+........+.. .+.+. ++..++||+
T Consensus 103 a~~v~~~Lgl~~~~~~~v~~~Cas~~~al~~A~~~i~sg~~~~vLvv~~E~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (378)
T PRK06816 103 ASMVHGELGAPPIEVVSSAGVCAAGMMALKYAYLSVKAGESRNAVATASELASRWFRASRFEAEEEKLAELEENPEIAFE 182 (378)
T ss_pred HHHHHhhCCCCCCceeeecCcCHHHHHHHHHHHHHHHCCCCCEEEEEeEccchhhhhhhhhhhHHHHhhcCcccCCCCCC
Confidence 357888899876 88899999999999999999999999999999999999654433222221 12222 233579999
Q ss_pred CCCCceeCC
Q psy11966 91 ASGVGHRQP 99 (99)
Q Consensus 91 ~~~~G~v~g 99 (99)
++..|++.|
T Consensus 183 ~~~~~~~fG 191 (378)
T PRK06816 183 KDFLRWMLS 191 (378)
T ss_pred CCCCCEeee
Confidence 999998764
No 41
>TIGR02446 FadI fatty oxidation complex, beta subunit FadI. This subunit of the FadJI complex has acetyl-CoA C-acyltransferase (EC 2.3.1.16) activity, and is also known as beta-ketothiolase and fatty oxidation complex, beta subunit, and YfcY. This protein is almost always located adjacent to FadJ (TIGR02440). The FadJI complex is needed for anaerobic beta-oxidation of short-chain fatty acids in E. coli.
Probab=98.77 E-value=1.2e-08 Score=75.10 Aligned_cols=54 Identities=17% Similarity=0.207 Sum_probs=46.5
Q ss_pred HHhHHHHHhCCC-C-CcceecccchHHHHHHHHHHHHHHcCCCCEEEEEecCCCCC
Q psy11966 14 AAKSNSPIFALA-G-PCCTIDTACSSTLFGLHLAVGAIERGECDHAIIGGVNLTLK 67 (99)
Q Consensus 14 ~~~~ia~~~~l~-G-p~~tv~~acaS~~~Ai~~A~~~i~~G~~d~~l~gg~~~~~~ 67 (99)
++..++...|+. + |.++|+++|+||+.|+..|++.|++|++|++||+|+|.+..
T Consensus 70 ~ar~~~l~aGl~~~~p~~~V~~~CaSG~~A~~~a~~~I~sG~~dvvla~G~E~mS~ 125 (430)
T TIGR02446 70 IAREIVLGTGMNVHTDAYSVTRACATSFQSAVNVAESIMAGAIDIGIAGGADSSSV 125 (430)
T ss_pred HHHHHHHhCCCCCCCchhhhhhhhhHHHHHHHHHHHHHHCCCCCEEEEeeeEcccC
Confidence 333444446887 4 99999999999999999999999999999999999999754
No 42
>PRK06633 acetyl-CoA acetyltransferase; Provisional
Probab=98.75 E-value=2.1e-08 Score=73.07 Aligned_cols=55 Identities=25% Similarity=0.333 Sum_probs=49.3
Q ss_pred hHHhHHHHHhCCCC--CcceecccchHHHHHHHHHHHHHHcCCCCEEEEEecCCCCC
Q psy11966 13 RAAKSNSPIFALAG--PCCTIDTACSSTLFGLHLAVGAIERGECDHAIIGGVNLTLK 67 (99)
Q Consensus 13 ~~~~~ia~~~~l~G--p~~tv~~acaS~~~Ai~~A~~~i~~G~~d~~l~gg~~~~~~ 67 (99)
..+..++...|+.. |.++|+++|+||+.|+..|++.|++|+.|++|++|+|.+..
T Consensus 65 ~~~r~~~~~~Gl~~~~p~~~V~~~CaSG~~Ai~~A~~~I~sG~~dvvla~G~E~ms~ 121 (392)
T PRK06633 65 NPARQTLIHAGIPKEVPGYTINKVCGSGLKSVALAANSIMTGDNEIVIAGGQENMSL 121 (392)
T ss_pred HHHHHHHHHCCCCCCccchhhcchhHHHHHHHHHHHHHHHcCCCCEEEEcccccCCC
Confidence 45556788899973 99999999999999999999999999999999999998753
No 43
>PRK06690 acetyl-CoA acetyltransferase; Provisional
Probab=98.75 E-value=2.5e-08 Score=71.97 Aligned_cols=52 Identities=29% Similarity=0.333 Sum_probs=47.9
Q ss_pred HHHHHhCCC-C-CcceecccchHHHHHHHHHHHHHHcCCCCEEEEEecCCCCCH
Q psy11966 17 SNSPIFALA-G-PCCTIDTACSSTLFGLHLAVGAIERGECDHAIIGGVNLTLKP 68 (99)
Q Consensus 17 ~ia~~~~l~-G-p~~tv~~acaS~~~Ai~~A~~~i~~G~~d~~l~gg~~~~~~~ 68 (99)
.++...|+. + |.++|+++|+||+.|+..|++.|++|++|++|++|+|.+.+.
T Consensus 62 ~~~~~~Gl~~~~p~~tV~~~CaSG~~Ai~~a~~~I~sG~~d~~l~gG~E~ms~~ 115 (361)
T PRK06690 62 LSALEAGLGLHIPGVTIDRQCGAGLEAIRTACHFIQGGAGKCYIAGGVESTSTS 115 (361)
T ss_pred HHHHHcCCCCCCCceehhhhhhHHHHHHHHHHHHHHCCCCCEEEEeccccccCC
Confidence 478889997 5 999999999999999999999999999999999999997654
No 44
>PRK08131 acetyl-CoA acetyltransferase; Provisional
Probab=98.72 E-value=3.8e-08 Score=71.89 Aligned_cols=56 Identities=29% Similarity=0.340 Sum_probs=48.9
Q ss_pred HHhHHHHHhCCC--CCcceecccchHHHHHHHHHHHHHHcCCCCEEEEEecCCCCCHH
Q psy11966 14 AAKSNSPIFALA--GPCCTIDTACSSTLFGLHLAVGAIERGECDHAIIGGVNLTLKPA 69 (99)
Q Consensus 14 ~~~~ia~~~~l~--Gp~~tv~~acaS~~~Ai~~A~~~i~~G~~d~~l~gg~~~~~~~~ 69 (99)
++-.++...|+. -|.++|+++|+||+.|+..|++.|++|++|++||+|+|.+....
T Consensus 66 ~ar~~~~~~Glp~~~p~~tV~~~CaSG~~Ai~~A~~~I~sG~~dvvlagG~Esms~~~ 123 (401)
T PRK08131 66 VARNALLLAGLPVTVPGQTVNRLCASGLAAVIDAARAITCGEGDLYLAGGVESMSRAP 123 (401)
T ss_pred HHHHHHHhcCCCCCCceeeeechhhhHHHHHHHHHHHHHCCCCCEEEEEEecCCCCCc
Confidence 343477888886 48999999999999999999999999999999999999876543
No 45
>PRK07661 acetyl-CoA acetyltransferase; Provisional
Probab=98.72 E-value=3.3e-08 Score=72.00 Aligned_cols=55 Identities=25% Similarity=0.324 Sum_probs=49.1
Q ss_pred HHhHHHHHhCCCC--CcceecccchHHHHHHHHHHHHHHcCCCCEEEEEecCCCCCH
Q psy11966 14 AAKSNSPIFALAG--PCCTIDTACSSTLFGLHLAVGAIERGECDHAIIGGVNLTLKP 68 (99)
Q Consensus 14 ~~~~ia~~~~l~G--p~~tv~~acaS~~~Ai~~A~~~i~~G~~d~~l~gg~~~~~~~ 68 (99)
++..++..+|+.. |.++|+++|+||+.|+..|++.|++|+.|++||+|+|.+...
T Consensus 67 ~a~~~~~~lGl~~~~p~~~V~~aCaSG~~Al~~A~~~I~sG~~d~vLv~G~E~ms~~ 123 (391)
T PRK07661 67 MARNIGALAGLPYTVPAITINRYCSSGLQSIAYGAERIMLGHSEAVIAGGAESMSLV 123 (391)
T ss_pred HHHHHHHHcCCCCCcceeehhhhhhHHHHHHHHHHHHHHcCCCCEEEEEEEeecccC
Confidence 3445888999974 999999999999999999999999999999999999986543
No 46
>PRK06504 acetyl-CoA acetyltransferase; Provisional
Probab=98.70 E-value=2.4e-08 Score=72.72 Aligned_cols=44 Identities=32% Similarity=0.464 Sum_probs=40.9
Q ss_pred CCCcceecccchHHHHHHHHHHHHHHcCCCCEEEEEecCCCCCH
Q psy11966 25 AGPCCTIDTACSSTLFGLHLAVGAIERGECDHAIIGGVNLTLKP 68 (99)
Q Consensus 25 ~Gp~~tv~~acaS~~~Ai~~A~~~i~~G~~d~~l~gg~~~~~~~ 68 (99)
+=|.++|+++|+||+.|+..|++.|++|++|++||+|+|.+...
T Consensus 79 ~vP~~tV~~~CaSG~~Ai~~A~~~I~sG~~dvvLagGvEsmS~~ 122 (390)
T PRK06504 79 SVPGTSIDRQCGSSQQALHFAAQAVMSGTMDIVIAAGVESMTRV 122 (390)
T ss_pred CCceEEEechhhHHHHHHHHHHHHHHCCCCCEEEEeeeeecCCC
Confidence 44999999999999999999999999999999999999997643
No 47
>PRK08947 fadA 3-ketoacyl-CoA thiolase; Reviewed
Probab=98.69 E-value=4.1e-08 Score=71.40 Aligned_cols=55 Identities=29% Similarity=0.442 Sum_probs=48.3
Q ss_pred HHhHHHHHhCCCC--CcceecccchHHHHHHHHHHHHHHcCCCCEEEEEecCCCCCH
Q psy11966 14 AAKSNSPIFALAG--PCCTIDTACSSTLFGLHLAVGAIERGECDHAIIGGVNLTLKP 68 (99)
Q Consensus 14 ~~~~ia~~~~l~G--p~~tv~~acaS~~~Ai~~A~~~i~~G~~d~~l~gg~~~~~~~ 68 (99)
++-.++...|+.. |.++|+++|+||+.|+..|+++|++|++|++||+|+|.+...
T Consensus 68 ~ar~~~~~~Gl~~~~p~~~V~~~caSG~~Ai~~A~~~I~sG~~d~vlv~G~E~ms~~ 124 (387)
T PRK08947 68 IARNAALLAGIPHSVPAVTVNRLCGSSMQALHDAARAIMTGDGDVFLIGGVEHMGHV 124 (387)
T ss_pred HHHHHHHHcCCCCCCcceeeechhHHHHHHHHHHHHHHHCCCCCEEEEccccccccC
Confidence 4445788888864 779999999999999999999999999999999999987543
No 48
>PTZ00455 3-ketoacyl-CoA thiolase; Provisional
Probab=98.67 E-value=3.5e-08 Score=72.82 Aligned_cols=49 Identities=27% Similarity=0.328 Sum_probs=43.3
Q ss_pred HHhCCCC-CcceecccchHHHHHHHHHHHHHHcCCCCEEEEEecCCCCCH
Q psy11966 20 PIFALAG-PCCTIDTACSSTLFGLHLAVGAIERGECDHAIIGGVNLTLKP 68 (99)
Q Consensus 20 ~~~~l~G-p~~tv~~acaS~~~Ai~~A~~~i~~G~~d~~l~gg~~~~~~~ 68 (99)
..+++.. |.++|+++|+||+.||..|+++|++|++|++||+|+|.+...
T Consensus 104 ~~~gl~~~p~~~V~~~caSG~~Ai~~A~~~I~sG~~dvvlv~G~E~ms~~ 153 (438)
T PTZ00455 104 ASNALLYKPAMRVEGACASGGLAVQSAWEALLAGTSDIALVVGVEVQTTV 153 (438)
T ss_pred cccccCCCceeEEECcCHHHHHHHHHHHHHHHCCCCCEEEEEEEeecccC
Confidence 3445555 999999999999999999999999999999999999997654
No 49
>PRK06025 acetyl-CoA acetyltransferase; Provisional
Probab=98.67 E-value=5.6e-08 Score=71.38 Aligned_cols=58 Identities=21% Similarity=0.266 Sum_probs=49.5
Q ss_pred hHHhHHHHHhCCC--CCcceecccchHHHHHHHHHHHHHHcCCCCEEEEEecCCCCCHHH
Q psy11966 13 RAAKSNSPIFALA--GPCCTIDTACSSTLFGLHLAVGAIERGECDHAIIGGVNLTLKPAT 70 (99)
Q Consensus 13 ~~~~~ia~~~~l~--Gp~~tv~~acaS~~~Ai~~A~~~i~~G~~d~~l~gg~~~~~~~~~ 70 (99)
.++-.++-.-||. =|.+||+..|+||+.||.+|++.|+.|+.|++|+||+|.+...+.
T Consensus 68 n~aR~~al~aglp~~vp~~tvnr~C~Sgl~ai~~aa~~I~~G~~~~~laGG~EsmS~~P~ 127 (417)
T PRK06025 68 DLGRMAALDAGYDIKASGVTLDRFCGGGITSVNLAAAQIMSGMEDLVIAGGTEMMSYTAA 127 (417)
T ss_pred cHHHHHHHhCCCCCCCCeeeeccccchHHHHHHHHHHHHHcCCCCEEEEeeeeccCCCcc
Confidence 3555566666663 399999999999999999999999999999999999999876653
No 50
>PRK08256 lipid-transfer protein; Provisional
Probab=98.65 E-value=5.9e-08 Score=70.47 Aligned_cols=50 Identities=24% Similarity=0.350 Sum_probs=46.6
Q ss_pred HHHHHhCCCC-CcceecccchHHHHHHHHHHHHHHcCCCCEEEEEecCCCC
Q psy11966 17 SNSPIFALAG-PCCTIDTACSSTLFGLHLAVGAIERGECDHAIIGGVNLTL 66 (99)
Q Consensus 17 ~ia~~~~l~G-p~~tv~~acaS~~~Ai~~A~~~i~~G~~d~~l~gg~~~~~ 66 (99)
.+...+|+++ |.++++++|+|++.||..|+++|++|++|++|++|+|.+.
T Consensus 61 ~~~~~lGl~~~~~~~v~~~caSg~~ai~~A~~~I~sG~~d~vLv~g~e~~s 111 (391)
T PRK08256 61 RALYEVGMTGIPIVNVNNNCSTGSTALFLARQAVRSGAADCALALGFEQMQ 111 (391)
T ss_pred HHHHHcCCCCCCCcccccccHHHHHHHHHHHHHHHCCCCCEEEEEEEeecc
Confidence 4677899999 9999999999999999999999999999999999999853
No 51
>PRK09268 acetyl-CoA acetyltransferase; Provisional
Probab=98.65 E-value=7.3e-08 Score=70.95 Aligned_cols=55 Identities=24% Similarity=0.326 Sum_probs=46.3
Q ss_pred HHhHHHHH--hCCCCCcceecccchHHHHHHHHHHHHHHcCCCCEEEEEecCCCCCH
Q psy11966 14 AAKSNSPI--FALAGPCCTIDTACSSTLFGLHLAVGAIERGECDHAIIGGVNLTLKP 68 (99)
Q Consensus 14 ~~~~ia~~--~~l~Gp~~tv~~acaS~~~Ai~~A~~~i~~G~~d~~l~gg~~~~~~~ 68 (99)
++-.++.. ++...|.++|+++|+||+.|+..|++.|++|++|++||+|+|.+.+.
T Consensus 70 ~~r~~~l~~gl~~~~p~~~V~~~CaSG~~ai~~A~~~I~sG~~d~vlvgG~E~ms~~ 126 (427)
T PRK09268 70 LTRECVLGSALSPYTPAYDLQQACGTGLEAAILVANKIALGQIDSGIAGGVDTTSDA 126 (427)
T ss_pred HHHHHHHHcCCCCCCceeeeechhhHHHHHHHHHHHHHHCCCCCEEEEeeEEccCCC
Confidence 34444444 44467999999999999999999999999999999999999987644
No 52
>PRK06366 acetyl-CoA acetyltransferase; Provisional
Probab=98.65 E-value=7.4e-08 Score=70.03 Aligned_cols=55 Identities=24% Similarity=0.274 Sum_probs=49.4
Q ss_pred hHHhHHHHHhCCCC--CcceecccchHHHHHHHHHHHHHHcCCCCEEEEEecCCCCC
Q psy11966 13 RAAKSNSPIFALAG--PCCTIDTACSSTLFGLHLAVGAIERGECDHAIIGGVNLTLK 67 (99)
Q Consensus 13 ~~~~~ia~~~~l~G--p~~tv~~acaS~~~Ai~~A~~~i~~G~~d~~l~gg~~~~~~ 67 (99)
.++..++..+|+.. |..+++++|+||+.|+..|+++|++|++|++|++|+|.+.+
T Consensus 64 ~~a~~~~~~~Gl~~~~p~~~v~~~caSg~~av~~Aa~~I~sG~~d~vla~G~e~ms~ 120 (388)
T PRK06366 64 NPAGQAAYHAGLPFGVTKYTVNVVCASGMLAVESAAREIMLGERDLVIAGGMENMSN 120 (388)
T ss_pred cHHHHHHHHCCCCCCCcceeeechhhHHHHHHHHHHHHHhcCCCCEEEEEeeEcccc
Confidence 34567889999975 99999999999999999999999999999999999998653
No 53
>PRK06157 acetyl-CoA acetyltransferase; Validated
Probab=98.64 E-value=9.7e-08 Score=69.62 Aligned_cols=53 Identities=23% Similarity=0.271 Sum_probs=48.2
Q ss_pred HhHHHHHhCCCC-CcceecccchHHHHHHHHHHHHHHcCCCCEEEEEecCCCCC
Q psy11966 15 AKSNSPIFALAG-PCCTIDTACSSTLFGLHLAVGAIERGECDHAIIGGVNLTLK 67 (99)
Q Consensus 15 ~~~ia~~~~l~G-p~~tv~~acaS~~~Ai~~A~~~i~~G~~d~~l~gg~~~~~~ 67 (99)
...++..+|+.+ |..+|+.+|+|++.+|.+|+..|++|++|++|++|+|.+..
T Consensus 67 ~~~~a~~lGl~~~~~~~v~~~c~sg~~ai~~A~~~I~sG~~d~vlv~G~e~~s~ 120 (398)
T PRK06157 67 GTPLSRALRLPNIPVTRVENFCATGSEAFRGAVYAVASGAYDIALALGVEKLKD 120 (398)
T ss_pred hHHHHHHcCCCCCCEEEEecccHHHHHHHHHHHHHHHCCCCCEEEEEEEeeccc
Confidence 356888999987 88889999999999999999999999999999999998643
No 54
>PRK05656 acetyl-CoA acetyltransferase; Provisional
Probab=98.63 E-value=9.7e-08 Score=69.52 Aligned_cols=54 Identities=31% Similarity=0.431 Sum_probs=49.5
Q ss_pred HHhHHHHHhCCCC--CcceecccchHHHHHHHHHHHHHHcCCCCEEEEEecCCCCC
Q psy11966 14 AAKSNSPIFALAG--PCCTIDTACSSTLFGLHLAVGAIERGECDHAIIGGVNLTLK 67 (99)
Q Consensus 14 ~~~~ia~~~~l~G--p~~tv~~acaS~~~Ai~~A~~~i~~G~~d~~l~gg~~~~~~ 67 (99)
.+..++..+|+.. |.++|+++|+|++.++..|++.|++|+.|++|++|+|.+..
T Consensus 65 ~a~~va~~lGl~~~~p~~~V~~~Casg~~ai~~A~~~I~sG~~d~vLv~G~E~ms~ 120 (393)
T PRK05656 65 PARQAAIKAGLPHSVPAMTLNKVCGSGLKALHLAAQAIRCGDAEVIIAGGQENMSL 120 (393)
T ss_pred HHHHHHHHcCCCCCcceEEecccchhHHHHHHHHHHHHHcCCCCEEEEEEEhhhcc
Confidence 5567999999974 99999999999999999999999999999999999998654
No 55
>PRK07851 acetyl-CoA acetyltransferase; Provisional
Probab=98.62 E-value=9.6e-08 Score=69.85 Aligned_cols=54 Identities=30% Similarity=0.358 Sum_probs=49.1
Q ss_pred hHHhHHHHHhCCCC-CcceecccchHHHHHHHHHHHHHHcCCCCEEEEEecCCCC
Q psy11966 13 RAAKSNSPIFALAG-PCCTIDTACSSTLFGLHLAVGAIERGECDHAIIGGVNLTL 66 (99)
Q Consensus 13 ~~~~~ia~~~~l~G-p~~tv~~acaS~~~Ai~~A~~~i~~G~~d~~l~gg~~~~~ 66 (99)
..+..++..+|+.+ |.++|+++|+|+..|+..|++.|++|++|++||+|+|.+.
T Consensus 67 ~~~~~~a~~lGl~~~p~~~v~~~caSG~~av~~Aa~~I~sG~~d~vLv~G~e~~s 121 (406)
T PRK07851 67 NMARVVAVLLGYDFLPGTTVNRYCSSSLQTTRMAFHAIKAGEGDVFISAGVETVS 121 (406)
T ss_pred CHHHHHHHHcCCCCCCeeeeeccchhHHHHHHHHHHHHHCCCCCEEEEeeEEecc
Confidence 34567999999987 8999999999999999999999999999999999999853
No 56
>TIGR02445 fadA fatty oxidation complex, beta subunit FadA. This subunit of the FadBA complex has acetyl-CoA C-acyltransferase (EC 2.3.1.16) activity, and is also known as beta-ketothiolase and fatty oxidation complex, beta subunit. This protein is almost always located adjacent to FadB (TIGR02437). The FadBA complex is the major complex active for beta-oxidation of fatty acids in E. coli.
Probab=98.62 E-value=8.2e-08 Score=69.81 Aligned_cols=55 Identities=25% Similarity=0.421 Sum_probs=45.5
Q ss_pred HHhHHHHHhCCCC--CcceecccchHHHHHHHHHHHHHHcCCCCEEEEEecCCCCCH
Q psy11966 14 AAKSNSPIFALAG--PCCTIDTACSSTLFGLHLAVGAIERGECDHAIIGGVNLTLKP 68 (99)
Q Consensus 14 ~~~~ia~~~~l~G--p~~tv~~acaS~~~Ai~~A~~~i~~G~~d~~l~gg~~~~~~~ 68 (99)
++..++...++.. |.++|+++|+||+.|+..|++.|++|+.|++|++|+|.+...
T Consensus 66 ~ar~~~~~~g~~~~~p~~tV~~~CaSG~~Ai~~Aa~~I~sG~~d~vlagG~E~ms~~ 122 (385)
T TIGR02445 66 IARNAALLAQIPHTSAAVTVNRLCGSSMQALHDAARAIMTGDADVCLVGGVEHMGHV 122 (385)
T ss_pred HHHHHHHHCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHCCCCCEEEEeeehhcccC
Confidence 3334444556544 779999999999999999999999999999999999987543
No 57
>PRK06064 acetyl-CoA acetyltransferase; Provisional
Probab=98.62 E-value=1e-07 Score=69.11 Aligned_cols=53 Identities=28% Similarity=0.303 Sum_probs=48.7
Q ss_pred HHhHHHHHhCCC-CCcceecccchHHHHHHHHHHHHHHcCCCCEEEEEecCCCC
Q psy11966 14 AAKSNSPIFALA-GPCCTIDTACSSTLFGLHLAVGAIERGECDHAIIGGVNLTL 66 (99)
Q Consensus 14 ~~~~ia~~~~l~-Gp~~tv~~acaS~~~Ai~~A~~~i~~G~~d~~l~gg~~~~~ 66 (99)
.+..++..+|++ .|.++|+++|+|++.||..|+++|++|++|++||+|.|.+.
T Consensus 63 ~a~~va~~lGl~~~~~~~v~~aCasg~~ai~~A~~~I~sG~~~~vLv~G~e~~s 116 (389)
T PRK06064 63 IAALIADYAGLAPIPATRVEAACASGGAALRQAYLAVASGEADVVLAAGVEKMT 116 (389)
T ss_pred HHHHHHHHcCCCCCCeeEEeCCcHHHHHHHHHHHHHHHCCCCCEEEEEEEEecc
Confidence 566789999998 59999999999999999999999999999999999998743
No 58
>PRK06205 acetyl-CoA acetyltransferase; Provisional
Probab=98.59 E-value=1.5e-07 Score=68.74 Aligned_cols=54 Identities=22% Similarity=0.303 Sum_probs=48.4
Q ss_pred HHhHHHHHhCCC-C-CcceecccchHHHHHHHHHHHHHHcCCCCEEEEEecCCCCC
Q psy11966 14 AAKSNSPIFALA-G-PCCTIDTACSSTLFGLHLAVGAIERGECDHAIIGGVNLTLK 67 (99)
Q Consensus 14 ~~~~ia~~~~l~-G-p~~tv~~acaS~~~Ai~~A~~~i~~G~~d~~l~gg~~~~~~ 67 (99)
++..++..+|+. + |.++|+.+|+|++.|+..|++.|++|++|++||+|+|.+..
T Consensus 65 ~a~~va~~~Gl~~~~p~~~V~~~CaSg~~Al~~A~~~I~sG~~d~vLv~G~E~ms~ 120 (404)
T PRK06205 65 IGRVAALDAGLPVTVPGMQLDRRCGSGLQAVITAAMQVQTGAADVVIAGGAESMSN 120 (404)
T ss_pred HHHHHHHHcCCCCCCceeehhhhhhHHHHHHHHHHHHHHcCCCCEEEEeeehhhcc
Confidence 455688889997 3 89999999999999999999999999999999999998653
No 59
>PRK08242 acetyl-CoA acetyltransferase; Validated
Probab=98.59 E-value=1.5e-07 Score=68.79 Aligned_cols=57 Identities=26% Similarity=0.328 Sum_probs=49.2
Q ss_pred hHHhHHHHHhCCC--CCcceecccchHHHHHHHHHHHHHHcCCCCEEEEEecCCCCCHH
Q psy11966 13 RAAKSNSPIFALA--GPCCTIDTACSSTLFGLHLAVGAIERGECDHAIIGGVNLTLKPA 69 (99)
Q Consensus 13 ~~~~~ia~~~~l~--Gp~~tv~~acaS~~~Ai~~A~~~i~~G~~d~~l~gg~~~~~~~~ 69 (99)
.++..++...|+. =|.++|+++|+|++.||..|+++|++|+.|++|++|+|.+...+
T Consensus 67 ~~~r~a~~~~Gl~~~~pa~~Vn~aCaSg~~Ai~~A~~~I~sG~~d~vLv~G~E~mS~~p 125 (402)
T PRK08242 67 DIARTAVLAAGLPETVPGVQINRFCASGLEAVNLAAAKVRSGWDDLVIAGGVESMSRVP 125 (402)
T ss_pred cHHHHHHHHcCCCCCCCeEEEcchhhhHHHHHHHHHHHHHcCCCCEEEEEEEEccCCCc
Confidence 3455566788883 39999999999999999999999999999999999999976543
No 60
>PRK09352 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=98.57 E-value=1.7e-07 Score=65.82 Aligned_cols=53 Identities=17% Similarity=0.235 Sum_probs=49.5
Q ss_pred hHHhHHHHHhCCCC-CcceecccchHHHHHHHHHHHHHHcCCCCEEEEEecCCC
Q psy11966 13 RAAKSNSPIFALAG-PCCTIDTACSSTLFGLHLAVGAIERGECDHAIIGGVNLT 65 (99)
Q Consensus 13 ~~~~~ia~~~~l~G-p~~tv~~acaS~~~Ai~~A~~~i~~G~~d~~l~gg~~~~ 65 (99)
..+.+|+..+|+.+ |.++++.+|+|++.||..|.++|++|++|.+|++++|.+
T Consensus 90 ~~~~~i~~~lG~~~~~~~~v~~~Casg~~al~~A~~~i~~g~~~~vLvv~~e~~ 143 (319)
T PRK09352 90 STACLVQARLGAKNAAAFDLSAACSGFVYALSTADQFIRSGAYKNVLVIGAEKL 143 (319)
T ss_pred hHHHHHHHHhCCCCCcEeeccccchhHHHHHHHHHHHHHcCCCCEEEEEEehhh
Confidence 35678999999988 899999999999999999999999999999999999984
No 61
>PRK06059 lipid-transfer protein; Provisional
Probab=98.56 E-value=2.2e-07 Score=67.66 Aligned_cols=54 Identities=28% Similarity=0.368 Sum_probs=49.7
Q ss_pred hHHhHHHHHhCCCC-CcceecccchHHHHHHHHHHHHHHcCCCCEEEEEecCCCC
Q psy11966 13 RAAKSNSPIFALAG-PCCTIDTACSSTLFGLHLAVGAIERGECDHAIIGGVNLTL 66 (99)
Q Consensus 13 ~~~~~ia~~~~l~G-p~~tv~~acaS~~~Ai~~A~~~i~~G~~d~~l~gg~~~~~ 66 (99)
..+..++..+|+++ |.++++.+|+|++.+|.+|+++|++|++|.+|++|.|.+.
T Consensus 62 ~~a~~va~~lG~~~~~~~~v~~~Casg~~al~~A~~~I~sG~~~~vLvvg~e~~s 116 (399)
T PRK06059 62 VAGATFAQALGWNGAPVSSSYAACASGSQALQSARAQILAGLCDVALVVGADTTP 116 (399)
T ss_pred cHHHHHHHHhCCCCCceecccchhHHHHHHHHHHHHHHHCCCCCEEEEEEEcccC
Confidence 34568999999988 8999999999999999999999999999999999999854
No 62
>PRK09051 beta-ketothiolase; Provisional
Probab=98.54 E-value=2.5e-07 Score=67.45 Aligned_cols=55 Identities=24% Similarity=0.312 Sum_probs=47.4
Q ss_pred HHhHHHHHhCCC--CCcceecccchHHHHHHHHHHHHHHcCCCCEEEEEecCCCCCH
Q psy11966 14 AAKSNSPIFALA--GPCCTIDTACSSTLFGLHLAVGAIERGECDHAIIGGVNLTLKP 68 (99)
Q Consensus 14 ~~~~ia~~~~l~--Gp~~tv~~acaS~~~Ai~~A~~~i~~G~~d~~l~gg~~~~~~~ 68 (99)
.+-.++...|+. -|.++|+++|+|++.|+..|++.|++|+.|++||+|+|.+...
T Consensus 67 ~a~~~~~~~Gl~~~~p~~~V~~aCaSg~~Al~~A~~~I~sG~~d~vLvvG~E~mS~~ 123 (394)
T PRK09051 67 LSRVAAINAGVPQETPAFNVNRLCGSGLQAIVSAAQAILLGDADVAIGGGAESMSRA 123 (394)
T ss_pred HHHHHHHHcCCCCCCceEEecccchHHHHHHHHHHHHHHcCCCCEEEEEeehhcccC
Confidence 444455667885 4999999999999999999999999999999999999986543
No 63
>PRK08235 acetyl-CoA acetyltransferase; Provisional
Probab=98.53 E-value=2.3e-07 Score=67.64 Aligned_cols=56 Identities=18% Similarity=0.298 Sum_probs=48.9
Q ss_pred HHhHHHHHhCCC--CCcceecccchHHHHHHHHHHHHHHcCCCCEEEEEecCCCCCHH
Q psy11966 14 AAKSNSPIFALA--GPCCTIDTACSSTLFGLHLAVGAIERGECDHAIIGGVNLTLKPA 69 (99)
Q Consensus 14 ~~~~ia~~~~l~--Gp~~tv~~acaS~~~Ai~~A~~~i~~G~~d~~l~gg~~~~~~~~ 69 (99)
++..++..+|+. -|.++|+++|+|++.|+..|++.|++|+.|++|++|+|.+...+
T Consensus 65 ~~~~~~~~~Gl~~~~p~~~V~~~CaSg~~Al~~A~~~I~sG~~d~vLvvG~E~ms~~p 122 (393)
T PRK08235 65 PSRQAARAAGIPWEVQTETVNKVCASGLRAVTLADQIIRAGDASVIVAGGMESMSNAP 122 (393)
T ss_pred HHHHHHHHcCCCCCcceeehhhhhhHHHHHHHHHHHHHHCCCCCEEEEEeeeccccCc
Confidence 444578889994 38999999999999999999999999999999999999876543
No 64
>PRK12578 acetyl-CoA acetyltransferase; Provisional
Probab=98.52 E-value=3.3e-07 Score=66.45 Aligned_cols=54 Identities=24% Similarity=0.250 Sum_probs=49.3
Q ss_pred HHhHHHHHhCCCC-CcceecccchHHHHHHHHHHHHHHcCCCCEEEEEecCCCCC
Q psy11966 14 AAKSNSPIFALAG-PCCTIDTACSSTLFGLHLAVGAIERGECDHAIIGGVNLTLK 67 (99)
Q Consensus 14 ~~~~ia~~~~l~G-p~~tv~~acaS~~~Ai~~A~~~i~~G~~d~~l~gg~~~~~~ 67 (99)
.+..++..+|+++ |.++|+++|+|++.||..|++.|++|++|.+|++|+|.+..
T Consensus 60 ~a~~v~~~lGl~~~~~~~v~~~casg~~al~~A~~~I~sG~~~~vLvvg~e~~s~ 114 (385)
T PRK12578 60 PAPIVAEYSGLTGKVPLRVEAMCATGLAASLTAYTAVASGLVDMAIAVGVDKMTE 114 (385)
T ss_pred hHHHHHHHhCCCCCCeeEEeccCHHHHHHHHHHHHHHHCCCCCEEEEEEEeeccc
Confidence 4567999999987 77899999999999999999999999999999999998654
No 65
>PRK09052 acetyl-CoA acetyltransferase; Provisional
Probab=98.50 E-value=3.7e-07 Score=66.69 Aligned_cols=56 Identities=23% Similarity=0.294 Sum_probs=47.1
Q ss_pred HHhH-HHHHhCCCC--CcceecccchHHHHHHHHHHHHHHcCCCCEEEEEecCCCCCHH
Q psy11966 14 AAKS-NSPIFALAG--PCCTIDTACSSTLFGLHLAVGAIERGECDHAIIGGVNLTLKPA 69 (99)
Q Consensus 14 ~~~~-ia~~~~l~G--p~~tv~~acaS~~~Ai~~A~~~i~~G~~d~~l~gg~~~~~~~~ 69 (99)
...+ +....|+.. |.++|+++|+|++.|+..|++.|++|+.|++|++|+|.+.+.+
T Consensus 71 ~~ar~~~~~~Gl~~~~p~~~V~~aCaSg~~Al~~A~~~I~sG~~d~vLv~G~E~mS~~p 129 (399)
T PRK09052 71 NVARIGALLAGLPNSVGGVTVNRFCASGLQAVAMAADRIRVGEADVMIAAGVESMSMVP 129 (399)
T ss_pred hHHHHHHHHcCCCCCCceeeecchhhHHHHHHHHHHHHHHCCCCCEEEEEEEeccccCc
Confidence 3445 445558863 7999999999999999999999999999999999999865443
No 66
>PRK06365 acetyl-CoA acetyltransferase; Provisional
Probab=98.50 E-value=3.6e-07 Score=67.32 Aligned_cols=52 Identities=13% Similarity=0.151 Sum_probs=47.5
Q ss_pred HHHHHhCCCC-CcceecccchHHHHHHHHHHHHHHcCCCCEEEEEecCCCCCH
Q psy11966 17 SNSPIFALAG-PCCTIDTACSSTLFGLHLAVGAIERGECDHAIIGGVNLTLKP 68 (99)
Q Consensus 17 ~ia~~~~l~G-p~~tv~~acaS~~~Ai~~A~~~i~~G~~d~~l~gg~~~~~~~ 68 (99)
.++..+|+.. |.++|+.+|+|+..||..|++.|++|++|++||+|+|.+...
T Consensus 80 ~~~~~lGl~~~~~~~v~~~~aSg~~ai~~A~~~I~sG~~~~vLv~G~e~~s~~ 132 (430)
T PRK06365 80 MVQDYLGLVPKPSKRIEGGGATGGLAFQAGYEEIASGRMDCVAVYGFETMSHV 132 (430)
T ss_pred HHHHhcCCCCCceEEEeCCcHHHHHHHHHHHHHHHcCCCCEEEEEEeeecccc
Confidence 4678999987 889999999999999999999999999999999999986543
No 67
>PRK08170 acetyl-CoA acetyltransferase; Provisional
Probab=98.50 E-value=3.5e-07 Score=67.31 Aligned_cols=55 Identities=24% Similarity=0.361 Sum_probs=49.0
Q ss_pred hHHhHHHHHhCCCC--CcceecccchHHHHHHHHHHHHHHcCCCCEEEEEecCCCCC
Q psy11966 13 RAAKSNSPIFALAG--PCCTIDTACSSTLFGLHLAVGAIERGECDHAIIGGVNLTLK 67 (99)
Q Consensus 13 ~~~~~ia~~~~l~G--p~~tv~~acaS~~~Ai~~A~~~i~~G~~d~~l~gg~~~~~~ 67 (99)
..+..++..+|+.. |.++++++|+|++.++..|+++|++|++|++|++|+|.+..
T Consensus 65 ~~a~~v~~~lGl~~~~p~~~v~~~CaSg~~al~~A~~~I~sG~~d~vLv~G~E~ms~ 121 (426)
T PRK08170 65 NIARVVALRLGCGEKVPAWTVQRNCASGMQALDSAAANIALGRADLVLAGGVEAMSH 121 (426)
T ss_pred hHHHHHHHHhCcCCCceeeeccchhhHHHHHHHHHHHHHHCCCCCEEEEEEEecccC
Confidence 34557889999953 99999999999999999999999999999999999997544
No 68
>PRK07515 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=98.49 E-value=3.6e-07 Score=65.83 Aligned_cols=53 Identities=23% Similarity=0.392 Sum_probs=49.4
Q ss_pred HHhHHHHHhCCCCCcceecccchHHHHHHHHHHHHHHcCCCCEEEEEecCCCC
Q psy11966 14 AAKSNSPIFALAGPCCTIDTACSSTLFGLHLAVGAIERGECDHAIIGGVNLTL 66 (99)
Q Consensus 14 ~~~~ia~~~~l~Gp~~tv~~acaS~~~Ai~~A~~~i~~G~~d~~l~gg~~~~~ 66 (99)
.+..++..+|++++++.++.+|+|++.||..|.++|++|++|.+|++++|.+.
T Consensus 134 ~a~~v~~~Lgl~~~~~~v~~aCasg~~al~~A~~~i~~g~~~~vLvv~~e~~s 186 (372)
T PRK07515 134 MAIEIQQALGIEGFAFDMNVACSSATFGIQTAANAIRSGSARRVLVVNPEICS 186 (372)
T ss_pred HHHHHHHhcCCCCcEEEecchhHHHHHHHHHHHHHHHcCCCCEEEEEeeeccc
Confidence 46689999999999999999999999999999999999999999999999843
No 69
>PLN02287 3-ketoacyl-CoA thiolase
Probab=98.49 E-value=2.8e-07 Score=68.36 Aligned_cols=52 Identities=25% Similarity=0.259 Sum_probs=46.5
Q ss_pred HHHHHhCCCC--CcceecccchHHHHHHHHHHHHHHcCCCCEEEEEecCCCCCH
Q psy11966 17 SNSPIFALAG--PCCTIDTACSSTLFGLHLAVGAIERGECDHAIIGGVNLTLKP 68 (99)
Q Consensus 17 ~ia~~~~l~G--p~~tv~~acaS~~~Ai~~A~~~i~~G~~d~~l~gg~~~~~~~ 68 (99)
.++..+|+.. |.++|+.+|+|++.|+..|++.|++|++|++||+|+|.+...
T Consensus 114 ~~a~~~Gl~~~~pa~~V~~~CaSG~~Ai~~Aa~~I~sG~~dvvLv~GvE~mS~~ 167 (452)
T PLN02287 114 MAAFYAGFPETVPVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGVESMTTN 167 (452)
T ss_pred HHHHHCCCCCCcceEEEeccCchHHHHHHHHHHHHHcCCCCeEEEEeEEecCCC
Confidence 4566779975 889999999999999999999999999999999999987554
No 70
>cd00826 nondecarbox_cond_enzymes nondecarboxylating condensing enzymes; In general, thiolases catalyze the reversible thiolytic cleavage of 3-ketoacyl-CoA into acyl-CoA and acetyl-CoA, a 2-step reaction involving a covalent intermediate formed with a catalytic cysteine. There are 2 functional different classes: thiolase-I (3-ketoacyl-CoA thiolase) and thiolase-II (acetoacetyl-CoA thiolase). Thiolase-I can cleave longer fatty acid molecules and plays an important role in the beta-oxidative degradation of fatty acids. Thiolase-II has a high substrate specificity. Although it can cleave acetoacyl-CoA, its main function is the synthesis of acetoacyl-CoA from two molecules of acetyl-CoA, which gives it importance in several biosynthetic pathways.
Probab=98.47 E-value=4.1e-07 Score=66.32 Aligned_cols=50 Identities=24% Similarity=0.345 Sum_probs=45.4
Q ss_pred HHHHhCCCC-CcceecccchHHHHHHHHHHHHHHcCCCCEEEEEecCCCCC
Q psy11966 18 NSPIFALAG-PCCTIDTACSSTLFGLHLAVGAIERGECDHAIIGGVNLTLK 67 (99)
Q Consensus 18 ia~~~~l~G-p~~tv~~acaS~~~Ai~~A~~~i~~G~~d~~l~gg~~~~~~ 67 (99)
+...+++.+ |.++|+++|+|++.|+..|+++|++|++|++|++|+|.+..
T Consensus 67 ~~~~lg~~~~p~~~V~~~Casg~~al~~A~~~I~sG~~~~vlv~g~e~~s~ 117 (393)
T cd00826 67 AMHAGGLQEAPAIGMNNLCGSGLRALALAMQLIAGGDANCILAGGFEKMET 117 (393)
T ss_pred HHHcCCCCCCcEEEecchhHHHHHHHHHHHHHHHCCCCCEEEEEeeecccc
Confidence 566678776 99999999999999999999999999999999999998643
No 71
>cd00829 SCP-x_thiolase Thiolase domain associated with sterol carrier protein (SCP)-x isoform and related proteins; SCP-2 has multiple roles in intracellular lipid circulation and metabolism. The N-terminal presequence in the SCP-x isoform represents a peroxisomal 3-ketacyl-Coa thiolase specific for branched-chain acyl CoAs, which is proteolytically cleaved from the sterol carrier protein.
Probab=98.47 E-value=6e-07 Score=64.53 Aligned_cols=57 Identities=18% Similarity=0.183 Sum_probs=51.2
Q ss_pred chHHhHHHHHhCCC-CCcceecccchHHHHHHHHHHHHHHcCCCCEEEEEecCCCCCH
Q psy11966 12 PRAAKSNSPIFALA-GPCCTIDTACSSTLFGLHLAVGAIERGECDHAIIGGVNLTLKP 68 (99)
Q Consensus 12 ~~~~~~ia~~~~l~-Gp~~tv~~acaS~~~Ai~~A~~~i~~G~~d~~l~gg~~~~~~~ 68 (99)
...+.+++..+|+. .|.++++.+|+|++.++..|++.|++|++|++|++|+|.+...
T Consensus 53 ~~~a~~va~~lGl~~~~~~~v~~~c~sg~~al~~Aa~~I~sG~~~~vlv~g~e~~s~~ 110 (375)
T cd00829 53 SFPGALIAEYLGLLGKPATRVEAAGASGSAAVRAAAAAIASGLADVVLVVGAEKMSDV 110 (375)
T ss_pred cchHHHHHHHcCCCCcceeeEeCccHHHHHHHHHHHHHHHhCCCCEEEEEEEeecccC
Confidence 35677899999994 5999999999999999999999999999999999999986544
No 72
>PRK06954 acetyl-CoA acetyltransferase; Provisional
Probab=98.46 E-value=2.7e-07 Score=67.34 Aligned_cols=42 Identities=21% Similarity=0.394 Sum_probs=39.2
Q ss_pred CCcceecccchHHHHHHHHHHHHHHcCCCCEEEEEecCCCCC
Q psy11966 26 GPCCTIDTACSSTLFGLHLAVGAIERGECDHAIIGGVNLTLK 67 (99)
Q Consensus 26 Gp~~tv~~acaS~~~Ai~~A~~~i~~G~~d~~l~gg~~~~~~ 67 (99)
-|.++|+++|+|++.|+..|+++|++|++|++|++|+|.+..
T Consensus 84 ~p~~~V~~aCaSG~~Av~~A~~~I~sG~~d~vLv~G~E~ms~ 125 (397)
T PRK06954 84 VGCTTVNKMCGSGMRAAMFAHDMLVAGSVDVIVAGGMESMTN 125 (397)
T ss_pred ccEeeccccchHHHHHHHHHHHHHHCCCCCEEEEEeeeccCC
Confidence 377999999999999999999999999999999999998653
No 73
>PLN02644 acetyl-CoA C-acetyltransferase
Probab=98.45 E-value=5.7e-07 Score=65.53 Aligned_cols=54 Identities=24% Similarity=0.372 Sum_probs=47.5
Q ss_pred HHhHHHHHhCCCC--CcceecccchHHHHHHHHHHHHHHcCCCCEEEEEecCCCCC
Q psy11966 14 AAKSNSPIFALAG--PCCTIDTACSSTLFGLHLAVGAIERGECDHAIIGGVNLTLK 67 (99)
Q Consensus 14 ~~~~ia~~~~l~G--p~~tv~~acaS~~~Ai~~A~~~i~~G~~d~~l~gg~~~~~~ 67 (99)
.+..++..+|+.. |..+|+.+|+|++.++.+|+++|++|++|++|++|+|.+..
T Consensus 64 ~~~~~~~~~Gl~~~~p~~~v~~~caSg~~av~~Aa~~I~sG~~d~vlv~G~E~~s~ 119 (394)
T PLN02644 64 PARQAALGAGLPPSTICTTVNKVCASGMKAVMLAAQSIQLGINDVVVAGGMESMSN 119 (394)
T ss_pred HHHHHHHhcCCCCCCceEEEeccchHHHHHHHHHHHHHHcCCCCEEEEEeEEecCC
Confidence 3445888899963 78899999999999999999999999999999999998653
No 74
>cd00751 thiolase Thiolase are ubiquitous enzymes that catalyze the reversible thiolytic cleavage of 3-ketoacyl-CoA into acyl-CoA and acetyl-CoA, a 2-step reaction involving a covalent intermediate formed with a catalytic cysteine. They are found in prokaryotes and eukaryotes (cytosol, microbodies and mitochondria). There are 2 functional different classes: thiolase-I (3-ketoacyl-CoA thiolase) and thiolase-II (acetoacetyl-CoA thiolase). Thiolase-I can cleave longer fatty acid molecules and plays an important role in the beta-oxidative degradation of fatty acids. Thiolase-II has a high substrate specificity. Although it can cleave acetoacyl-CoA, its main function is the synthesis of acetoacyl-CoA from two molecules of acetyl-CoA, which gives it importance in several biosynthetic pathways.
Probab=98.45 E-value=4.7e-07 Score=65.66 Aligned_cols=54 Identities=30% Similarity=0.486 Sum_probs=48.6
Q ss_pred hHHhHHHHHhCCCC--CcceecccchHHHHHHHHHHHHHHcCCCCEEEEEecCCCC
Q psy11966 13 RAAKSNSPIFALAG--PCCTIDTACSSTLFGLHLAVGAIERGECDHAIIGGVNLTL 66 (99)
Q Consensus 13 ~~~~~ia~~~~l~G--p~~tv~~acaS~~~Ai~~A~~~i~~G~~d~~l~gg~~~~~ 66 (99)
..+..++..+|++. |.+.|+++|+|++.++..|+++|++|++|.+|++|+|.+.
T Consensus 60 ~~a~~v~~~lGl~~~~~~~~v~~~c~s~~~al~~A~~~I~sG~~~~vLv~g~e~~s 115 (386)
T cd00751 60 NPARQAALLAGLPESVPATTVNRVCGSGLQAVALAAQSIAAGEADVVVAGGVESMS 115 (386)
T ss_pred hHHHHHHHHcCCCCCCchhhhccccHHHHHHHHHHHHHHHCCCCCeEEEeeeeccc
Confidence 34556889999975 9999999999999999999999999999999999999853
No 75
>PRK07801 acetyl-CoA acetyltransferase; Provisional
Probab=98.37 E-value=5.5e-07 Score=65.32 Aligned_cols=47 Identities=30% Similarity=0.451 Sum_probs=41.6
Q ss_pred HhCC--CCCcceecccchHHHHHHHHHHHHHHcCCCCEEEEEecCCCCC
Q psy11966 21 IFAL--AGPCCTIDTACSSTLFGLHLAVGAIERGECDHAIIGGVNLTLK 67 (99)
Q Consensus 21 ~~~l--~Gp~~tv~~acaS~~~Ai~~A~~~i~~G~~d~~l~gg~~~~~~ 67 (99)
..++ ..|.++|+++|+|++.|+..|++.|++|++|++||+|+|.+..
T Consensus 73 ~~gl~~~~p~~~v~~acaSg~~Av~~Aa~~I~sG~~d~vLv~G~e~ms~ 121 (382)
T PRK07801 73 AAGLPEEVPGVTVDRQCGSSQQAIHFAAQAVMSGTQDLVVAGGVQNMSQ 121 (382)
T ss_pred HcCCCCCCceeeecchhhhHHHHHHHHHHHHHCCCCCEEEEcchhhhcC
Confidence 3455 4588999999999999999999999999999999999997644
No 76
>TIGR00747 fabH 3-oxoacyl-(acyl-carrier-protein) synthase III. Active site residues include Cys112, His244 and Asn274 of E. coli FabH. Cys-112 is the site of acyl group attachment.
Probab=98.37 E-value=1e-06 Score=61.93 Aligned_cols=54 Identities=22% Similarity=0.403 Sum_probs=50.1
Q ss_pred hHHhHHHHHhCCCC-CcceecccchHHHHHHHHHHHHHHcCCCCEEEEEecCCCC
Q psy11966 13 RAAKSNSPIFALAG-PCCTIDTACSSTLFGLHLAVGAIERGECDHAIIGGVNLTL 66 (99)
Q Consensus 13 ~~~~~ia~~~~l~G-p~~tv~~acaS~~~Ai~~A~~~i~~G~~d~~l~gg~~~~~ 66 (99)
..+.+++..+|+++ |.+.+..+|++++.||..|.++|++|+.|.+|++++|...
T Consensus 89 ~~a~~l~~~lGl~~~~~~~v~~~C~s~~~al~~A~~~i~~g~~~~~Lvv~~e~~~ 143 (318)
T TIGR00747 89 SAACMVQAYLGIKGIPAFDLSAACAGFIYALSVAKQYIESGKYKTVLVVGAEKLS 143 (318)
T ss_pred hHHHHHHHHhCCCCCcEeehhhhhHHHHHHHHHHHHHHHcCCCCEEEEEEehhhc
Confidence 35678999999998 8999999999999999999999999999999999999853
No 77
>PRK07516 acetyl-CoA acetyltransferase; Provisional
Probab=98.32 E-value=1.7e-06 Score=62.92 Aligned_cols=51 Identities=22% Similarity=0.255 Sum_probs=44.1
Q ss_pred HHHHhCCCC-CcceecccchHHHHHHHHHHHHHHcCCCCEEEEEecCCCCCH
Q psy11966 18 NSPIFALAG-PCCTIDTACSSTLFGLHLAVGAIERGECDHAIIGGVNLTLKP 68 (99)
Q Consensus 18 ia~~~~l~G-p~~tv~~acaS~~~Ai~~A~~~i~~G~~d~~l~gg~~~~~~~ 68 (99)
+...++++. |.++|+++|+|++.||..|++.|++|++|.+|++|.|.+...
T Consensus 67 ~~~~~gl~~~p~~~v~~~CaSg~~Al~~A~~~I~sG~~d~vLvvg~e~~s~~ 118 (389)
T PRK07516 67 LQADPALRFKPATRVENACATGSAAVYAALDAIEAGRARIVLVVGAEKMTAT 118 (389)
T ss_pred HHHhcCCCCCceeeeccccHHHHHHHHHHHHHHHCCCCCEEEEEEehhhccC
Confidence 334556655 889999999999999999999999999999999999996543
No 78
>PRK09258 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=98.30 E-value=3.5e-06 Score=59.79 Aligned_cols=54 Identities=24% Similarity=0.257 Sum_probs=49.1
Q ss_pred chHHhHHHHHhCCCC--CcceecccchHHHHHHHHHHHHHHcCCCCEEEEEecCCC
Q psy11966 12 PRAAKSNSPIFALAG--PCCTIDTACSSTLFGLHLAVGAIERGECDHAIIGGVNLT 65 (99)
Q Consensus 12 ~~~~~~ia~~~~l~G--p~~tv~~acaS~~~Ai~~A~~~i~~G~~d~~l~gg~~~~ 65 (99)
...+.++...+|+.. +.+.|..+|++++.|+..|.++|++|+.+.+|+++.|..
T Consensus 98 p~~a~~v~~~lgl~~~~~~~~v~~~C~~~~~al~~A~~~i~~g~~~~~Lvv~~e~~ 153 (338)
T PRK09258 98 PATACRVHHNLGLPKSCANFDVSNACLGFLNGMLDAANMIELGQIDYALVVSGESA 153 (338)
T ss_pred ChHHHHHHHHcCCCCCCceeehhhhhHHHHHHHHHHHHHHHcCCCCEEEEEEeccc
Confidence 346778999999974 788999999999999999999999999999999999974
No 79
>PRK06445 acetyl-CoA acetyltransferase; Provisional
Probab=98.28 E-value=1.5e-06 Score=63.41 Aligned_cols=49 Identities=24% Similarity=0.396 Sum_probs=42.4
Q ss_pred HHHhCCCCCcceecccchHHHHHHHHHHHHHHcCCCCEEEEEecCCCCC
Q psy11966 19 SPIFALAGPCCTIDTACSSTLFGLHLAVGAIERGECDHAIIGGVNLTLK 67 (99)
Q Consensus 19 a~~~~l~Gp~~tv~~acaS~~~Ai~~A~~~i~~G~~d~~l~gg~~~~~~ 67 (99)
...++.+-|+++|+++|+|++.++..|++.|++|++|++|++|+|.+..
T Consensus 79 ~a~~~~~~p~~~V~~~CaSg~~ai~~A~~~I~sG~~d~vLv~G~e~ms~ 127 (394)
T PRK06445 79 LARLPYNIPAMAVDRQCASSLTTVSIGAMEIATGMADIVIAGGVEHMTR 127 (394)
T ss_pred HcCCCCCCcchhhhhhhHHHHHHHHHHHHHHHcCCCCEEEEeeeccccc
Confidence 3334444599999999999999999999999999999999999997543
No 80
>KOG1390|consensus
Probab=98.28 E-value=1.8e-06 Score=61.42 Aligned_cols=59 Identities=22% Similarity=0.339 Sum_probs=49.4
Q ss_pred cchHHhHHHHHhCCCC--CcceecccchHHHHHHHHHHHHHHcCCCCEEEEEecCCCCCHH
Q psy11966 11 TPRAAKSNSPIFALAG--PCCTIDTACSSTLFGLHLAVGAIERGECDHAIIGGVNLTLKPA 69 (99)
Q Consensus 11 ~~~~~~~ia~~~~l~G--p~~tv~~acaS~~~Ai~~A~~~i~~G~~d~~l~gg~~~~~~~~ 69 (99)
...++-+.+---||-- |++||+--|+||+.|+.+|++.|+.|..|++++||.|.|.+.+
T Consensus 66 GQapaRQaalgAGlp~sv~~tTvNkvCaSgmKAv~laaQsI~~G~~divVaGGmEsMS~vP 126 (396)
T KOG1390|consen 66 GQAPARQAALGAGLPYSVPATTVNKVCASGMKAVILAAQSIQTGHADIVVAGGMESMSNVP 126 (396)
T ss_pred CcchHHHHHhhcCCCcceeeEeehhhhhhhHHHHHHHHHHHhcCCccEEEecccchhccCc
Confidence 3344445555555533 9999999999999999999999999999999999999988877
No 81
>PRK06065 acetyl-CoA acetyltransferase; Provisional
Probab=98.27 E-value=2.5e-06 Score=62.29 Aligned_cols=52 Identities=8% Similarity=-0.008 Sum_probs=47.4
Q ss_pred HHhHHHHHhCCCC-CcceecccchHHHHHHHHHHHHHHcCCCCEEEEEecCCC
Q psy11966 14 AAKSNSPIFALAG-PCCTIDTACSSTLFGLHLAVGAIERGECDHAIIGGVNLT 65 (99)
Q Consensus 14 ~~~~ia~~~~l~G-p~~tv~~acaS~~~Ai~~A~~~i~~G~~d~~l~gg~~~~ 65 (99)
.+..++..+|+.+ |.+.|+++|+|+..++..|+.+|++|++|.+||.|.|.+
T Consensus 69 ~a~~l~~~lG~~~~~~~~V~~~gasG~~al~~A~~~I~sG~ad~vLVvg~e~~ 121 (392)
T PRK06065 69 KGEYLSHGSGGIRKPVSRVYVGGATGVMTAIAGWYHVASGLCQKVLAVAEEKM 121 (392)
T ss_pred HHHHHHHHcCCCCCCeEEEecCchhHHHHHHHHHHHHhCCCCCEEEEEEeecc
Confidence 5557888898875 999999999999999999999999999999999999985
No 82
>PRK05790 putative acyltransferase; Provisional
Probab=98.27 E-value=3e-06 Score=61.65 Aligned_cols=51 Identities=29% Similarity=0.408 Sum_probs=45.0
Q ss_pred HHHHHhCCC--CCcceecccchHHHHHHHHHHHHHHcCCCCEEEEEecCCCCC
Q psy11966 17 SNSPIFALA--GPCCTIDTACSSTLFGLHLAVGAIERGECDHAIIGGVNLTLK 67 (99)
Q Consensus 17 ~ia~~~~l~--Gp~~tv~~acaS~~~Ai~~A~~~i~~G~~d~~l~gg~~~~~~ 67 (99)
.+....++. -|.++++.+|+|++.||..|+++|++|++|++|++|+|.+..
T Consensus 68 ~~~~~~gl~~~~~~~~v~~~Casg~~al~~A~~~I~sG~~d~vLv~G~e~~s~ 120 (393)
T PRK05790 68 QAALKAGLPVEVPALTINKVCGSGLKAVALAAQAIRAGDADIVVAGGQESMSQ 120 (393)
T ss_pred HHHHHcCCCCCCceeeecccchHHHHHHHHHHHHHHcCCCCEEEEEeeecccc
Confidence 356667885 389999999999999999999999999999999999998543
No 83
>TIGR01930 AcCoA-C-Actrans acetyl-CoA acetyltransferases. This model represents a large family of enzymes which catalyze the thiolysis of a linear fatty acid CoA (or acetoacetyl-CoA) using a second CoA molecule to produce acetyl-CoA and a CoA-ester product two carbons shorter (or, alternatively, the condensation of two molecules of acetyl-CoA to produce acetoacetyl-CoA and CoA). This enzyme is also known as "thiolase", "3-ketoacyl-CoA thiolase", "beta-ketothiolase" and "Fatty oxidation complex beta subunit". When catalyzing the degradative reaction on fatty acids the corresponding EC number is 2.3.1.16. The condensation reaction corresponds to 2.3.1.9. Note that the enzymes which catalyze the condensation are generally not involved in fatty acid biosynthesis, which is carried out by a decarboxylating condensation of acetyl and malonyl esters of acyl carrier proteins. Rather, this activity may produce acetoacetyl-CoA for pathways such as IPP biosynthesis in the absence of sufficient fatt
Probab=98.26 E-value=2.8e-06 Score=61.72 Aligned_cols=53 Identities=30% Similarity=0.453 Sum_probs=47.6
Q ss_pred HHhHHHHHhCCC--CCcceecccchHHHHHHHHHHHHHHcCCCCEEEEEecCCCC
Q psy11966 14 AAKSNSPIFALA--GPCCTIDTACSSTLFGLHLAVGAIERGECDHAIIGGVNLTL 66 (99)
Q Consensus 14 ~~~~ia~~~~l~--Gp~~tv~~acaS~~~Ai~~A~~~i~~G~~d~~l~gg~~~~~ 66 (99)
.+..++..+|+. -|.+.++++|+|+..++..|+++|++|++|.+|++|+|.+.
T Consensus 60 ~a~~va~~lGl~~~~~~~~v~~~Casg~~al~~A~~~I~sG~~~~vLv~g~e~~s 114 (386)
T TIGR01930 60 IARQAALLAGLPESVPAYTVNRQCASGLQAVILAAQLIRAGEADVVVAGGVESMS 114 (386)
T ss_pred HHHHHHHHcCCCCCceeeeecchhhHHHHHHHHHHHHHHCCCCCEEEEEEehhhc
Confidence 455788999996 38999999999999999999999999999999999999754
No 84
>KOG1406|consensus
Probab=98.21 E-value=1.6e-06 Score=60.60 Aligned_cols=54 Identities=20% Similarity=0.330 Sum_probs=49.4
Q ss_pred HHhHHHHHhCCCC-CcceecccchHHHHHHHHHHHHHHcCCCCEEEEEecCCCCC
Q psy11966 14 AAKSNSPIFALAG-PCCTIDTACSSTLFGLHLAVGAIERGECDHAIIGGVNLTLK 67 (99)
Q Consensus 14 ~~~~ia~~~~l~G-p~~tv~~acaS~~~Ai~~A~~~i~~G~~d~~l~gg~~~~~~ 67 (99)
...|.-|.+|++| |.+.|++.|++|..|+.+|.+.|++|..|.+|+-|.|.+..
T Consensus 65 cgqraiyevgmtgipi~nvnnncatgssalflakqiiesgn~dcvlalgfekm~~ 119 (408)
T KOG1406|consen 65 CGQRAIYEVGMTGIPIYNVNNNCATGSSALFLAKQIIESGNSDCVLALGFEKMER 119 (408)
T ss_pred cchHHHHhccccCcceeeccCccccCchHHHHHHHHHhcCCcceEEeechhhhCC
Confidence 3447888999999 99999999999999999999999999999999999998543
No 85
>PRK07204 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=98.21 E-value=4.4e-06 Score=59.10 Aligned_cols=53 Identities=25% Similarity=0.350 Sum_probs=49.0
Q ss_pred hHHhHHHHHhCCCC---CcceecccchHHHHHHHHHHHHHHcCCCCEEEEEecCCC
Q psy11966 13 RAAKSNSPIFALAG---PCCTIDTACSSTLFGLHLAVGAIERGECDHAIIGGVNLT 65 (99)
Q Consensus 13 ~~~~~ia~~~~l~G---p~~tv~~acaS~~~Ai~~A~~~i~~G~~d~~l~gg~~~~ 65 (99)
..+.+|...+|+++ |++.++.+|++++.|+..|..+|++|+.|.+|+++.|..
T Consensus 90 ~~a~~v~~~lgl~~~~~~~~~v~~~C~~~~~al~~a~~~l~~g~~~~~Lvv~~e~~ 145 (329)
T PRK07204 90 CTASLIQEQLGLQHSGIPCFDINSTCLSFITALDTISYAIECGRYKRVLIISSEIS 145 (329)
T ss_pred cHHHHHHHHhCCCCCCceEEEccchhHHHHHHHHHHHHHHHCCCCCEEEEEEeccc
Confidence 56778999999985 889999999999999999999999999999999999974
No 86
>cd00827 init_cond_enzymes "initiating" condensing enzymes are a subclass of decarboxylating condensing enzymes, including beta-ketoacyl [ACP] synthase, type III and polyketide synthases, type III, which include chalcone synthase and related enzymes. They are characterized by the utlization of CoA substrate primers, as well as the nature of their active site residues.
Probab=98.21 E-value=2.9e-06 Score=59.57 Aligned_cols=57 Identities=19% Similarity=0.258 Sum_probs=50.9
Q ss_pred hHHhHHHHHhCCC-CCcceecccchHHHHHHHHHHHHHHcCCCCEEEEEecCCCCCHH
Q psy11966 13 RAAKSNSPIFALA-GPCCTIDTACSSTLFGLHLAVGAIERGECDHAIIGGVNLTLKPA 69 (99)
Q Consensus 13 ~~~~~ia~~~~l~-Gp~~tv~~acaS~~~Ai~~A~~~i~~G~~d~~l~gg~~~~~~~~ 69 (99)
..+.+|+..+|+. -|.+.++.+|+|++.|+..|.++|++|..|.+|++++|.+....
T Consensus 86 ~~~~~i~~~lg~~~~~~~~v~~~C~s~~~al~~A~~~i~~g~~~~vlvv~~e~~~~~~ 143 (324)
T cd00827 86 SAATYLAELLGLTNAEAFDLKQACYGGTAALQLAANLVESGPWRYALVVASDIASYLL 143 (324)
T ss_pred cHHHHHHHHcCCCCCceeehhhhhHHHHHHHHHHHHHHHcCCCCEEEEEEEHHhhhcc
Confidence 4677899999994 59999999999999999999999999999999999999865443
No 87
>TIGR02845 spore_V_AD stage V sporulation protein AD. Bacillus and Clostridium species contain about 10 % dipicolinic acid (pyridine-2,6-dicarboxylic acid) by weight. This protein family, SpoVAD, belongs to the spoVA operon that is suggested to act in the transport of dipicolinic acid (DPA) from the mother cell, where DPA is synthesized, to the forespore, a process essential to sporulation. Members of this protein family are found, so far, in exactly those species believed capable of endospore formation.
Probab=98.20 E-value=4.6e-06 Score=59.45 Aligned_cols=56 Identities=16% Similarity=0.187 Sum_probs=50.0
Q ss_pred hHHhHHHHHhCCCCCcceecccchHHHHHHHHHHHHHHcCCCCEEEEEecCCCCCHHH
Q psy11966 13 RAAKSNSPIFALAGPCCTIDTACSSTLFGLHLAVGAIERGECDHAIIGGVNLTLKPAT 70 (99)
Q Consensus 13 ~~~~~ia~~~~l~Gp~~tv~~acaS~~~Ai~~A~~~i~~G~~d~~l~gg~~~~~~~~~ 70 (99)
..+..++..+|+ |.+-|+++|+|+..|+..|..+|++|.+|.+||++.|.+.+.+.
T Consensus 85 ~~As~vA~~LGI--P~fdV~~ACSTf~~AL~lAa~lI~SG~ad~VLVV~Ssh~S~AEr 140 (327)
T TIGR02845 85 ITANFVARDLGI--PFLGLYGACSTSMETLALGAMLVDGGFADRVLAATSSHYATAER 140 (327)
T ss_pred cHHHHHHHHhCC--CEEEEeccCHHHHHHHHHHHHHHhCCCCCEEEEEEecccchhhh
Confidence 467789999987 88999999999999999999999999999999999998665543
No 88
>cd00830 KAS_III Ketoacyl-acyl carrier protein synthase III (KASIII) initiates the elongation in type II fatty acid synthase systems. It is found in bacteria and plants. Elongation of fatty acids in the type II systems occurs by Claisen condensation of malonyl-acyl carrier protein (ACP) with acyl-ACP. KASIII initiates this process by specifically using acetyl-CoA over acyl-CoA.
Probab=98.20 E-value=5.1e-06 Score=58.24 Aligned_cols=55 Identities=25% Similarity=0.410 Sum_probs=49.6
Q ss_pred chHHhHHHHHhCC-CCCcceecccchHHHHHHHHHHHHHHcCCCCEEEEEecCCCC
Q psy11966 12 PRAAKSNSPIFAL-AGPCCTIDTACSSTLFGLHLAVGAIERGECDHAIIGGVNLTL 66 (99)
Q Consensus 12 ~~~~~~ia~~~~l-~Gp~~tv~~acaS~~~Ai~~A~~~i~~G~~d~~l~gg~~~~~ 66 (99)
...+.+++..+|+ +.|.+.++.+|++++.||..|.++|++|+.|.+|++++|.+.
T Consensus 87 ~~~~~~l~~~lg~~~~~~~~v~~~C~s~~~al~~A~~~i~~g~~~~vLvv~~e~~s 142 (320)
T cd00830 87 PATACLVQARLGAKNAAAFDINAACSGFLYGLSTAAGLIRSGGAKNVLVVGAETLS 142 (320)
T ss_pred CcHHHHHHHHhCCCCCcEeeccccchHHHHHHHHHHHHHHcCCCCEEEEEEehhhc
Confidence 3467889999999 558889999999999999999999999999999999999843
No 89
>CHL00203 fabH 3-oxoacyl-acyl-carrier-protein synthase 3; Provisional
Probab=98.16 E-value=5.6e-06 Score=58.64 Aligned_cols=53 Identities=19% Similarity=0.256 Sum_probs=47.9
Q ss_pred HHhHHHHHhCCCC-CcceecccchHHHHHHHHHHHHHHcCCCCEEEEEecCCCC
Q psy11966 14 AAKSNSPIFALAG-PCCTIDTACSSTLFGLHLAVGAIERGECDHAIIGGVNLTL 66 (99)
Q Consensus 14 ~~~~ia~~~~l~G-p~~tv~~acaS~~~Ai~~A~~~i~~G~~d~~l~gg~~~~~ 66 (99)
.+..+...+|++. |.+.|..+|++++.|+..|.++|++|+.|.+|++|+|.+.
T Consensus 89 ~~~~v~~~Lg~~~~~~~~v~~~Casg~~al~~A~~~i~sg~~~~~Lvv~~e~~s 142 (326)
T CHL00203 89 SASQLQAEIGATRAVAFDITAACSGFILALVTATQFIQNGSYKNILVVGADTLS 142 (326)
T ss_pred hHHHHHHHhCCCCCceeeecccchhHHHHHHHHHHHHHcCCCCEEEEEEehhhh
Confidence 3567889999977 7789999999999999999999999999999999999843
No 90
>PRK12879 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=98.16 E-value=9.1e-06 Score=57.25 Aligned_cols=54 Identities=24% Similarity=0.437 Sum_probs=49.3
Q ss_pred chHHhHHHHHhCCCC-CcceecccchHHHHHHHHHHHHHHcCCCCEEEEEecCCC
Q psy11966 12 PRAAKSNSPIFALAG-PCCTIDTACSSTLFGLHLAVGAIERGECDHAIIGGVNLT 65 (99)
Q Consensus 12 ~~~~~~ia~~~~l~G-p~~tv~~acaS~~~Ai~~A~~~i~~G~~d~~l~gg~~~~ 65 (99)
...+.+++..+|++. +.+.++.+|++++.||..|.++|++|+.|.+|++++|.+
T Consensus 90 ~~~a~~l~~~lg~~~~~~~~v~~~C~~~~~al~~A~~~l~~g~~~~~Lvv~~e~~ 144 (325)
T PRK12879 90 PSTASQVQARLGIPNAAAFDINAACAGFLYGLETANGLITSGLYKKVLVIGAERL 144 (325)
T ss_pred ChHHHHHHHHhCCCCCcEEEECccchHHHHHHHHHHHHHHcCCCCEEEEEEehhh
Confidence 346788999999975 889999999999999999999999999999999999974
No 91
>PRK08313 acetyl-CoA acetyltransferase; Provisional
Probab=98.14 E-value=6.1e-06 Score=60.06 Aligned_cols=53 Identities=13% Similarity=0.042 Sum_probs=48.2
Q ss_pred HHhHHHHHhCCCC-CcceecccchHHHHHHHHHHHHHHcCCCCEEEEEecCCCC
Q psy11966 14 AAKSNSPIFALAG-PCCTIDTACSSTLFGLHLAVGAIERGECDHAIIGGVNLTL 66 (99)
Q Consensus 14 ~~~~ia~~~~l~G-p~~tv~~acaS~~~Ai~~A~~~i~~G~~d~~l~gg~~~~~ 66 (99)
.+..++..+|++. |.+.++++|+++..++..|++.|++|++|.+|+.|.|.+.
T Consensus 64 ~~~~va~~LGl~~~~~~~v~~~casg~~al~~A~~~I~sG~~~~vLVvg~e~~s 117 (386)
T PRK08313 64 PELFLADALGATGKPLIRVHTAGSVGGSTAVVAASLVQSGVYRRVLAVAWEKQS 117 (386)
T ss_pred chHHHHHhcCCCCCceEEEeccCHHHHHHHHHHHHHHHCCCCCEEEEEEEEEcc
Confidence 3468999999987 8889999999999999999999999999999999999753
No 92
>PRK06289 acetyl-CoA acetyltransferase; Provisional
Probab=98.14 E-value=4.9e-06 Score=60.79 Aligned_cols=47 Identities=30% Similarity=0.401 Sum_probs=41.7
Q ss_pred hCCCC-CcceecccchHHHHHHHHHHHHHHcCCCCEEEEEecCCCCCH
Q psy11966 22 FALAG-PCCTIDTACSSTLFGLHLAVGAIERGECDHAIIGGVNLTLKP 68 (99)
Q Consensus 22 ~~l~G-p~~tv~~acaS~~~Ai~~A~~~i~~G~~d~~l~gg~~~~~~~ 68 (99)
.++.| |.++++++|+|++.||..|+.+|++|++|.+||+|+|.+...
T Consensus 76 ~~~~g~~~~~v~~~Casg~~al~~Aa~~I~sG~~~~VLvvg~e~~s~~ 123 (403)
T PRK06289 76 PALWGVPASRHEAACASGSVATLAAMADLRAGRYDVALVVGVELMKTV 123 (403)
T ss_pred hcCCCCceeecccccHHHHHHHHHHHHHHHcCCCCEEEEEEEEecCCC
Confidence 34545 899999999999999999999999999999999999986543
No 93
>PRK08304 stage V sporulation protein AD; Validated
Probab=98.07 E-value=9.7e-06 Score=58.00 Aligned_cols=55 Identities=18% Similarity=0.206 Sum_probs=49.3
Q ss_pred hHHhHHHHHhCCCCCcceecccchHHHHHHHHHHHHHHcCCCCEEEEEecCCCCCHH
Q psy11966 13 RAAKSNSPIFALAGPCCTIDTACSSTLFGLHLAVGAIERGECDHAIIGGVNLTLKPA 69 (99)
Q Consensus 13 ~~~~~ia~~~~l~Gp~~tv~~acaS~~~Ai~~A~~~i~~G~~d~~l~gg~~~~~~~~ 69 (99)
..+..++..+++ |.+-|+++|+|+..|+..|+.+|++|.+|.+|+.+.+.+.+.+
T Consensus 91 ~sAs~vA~~LGI--Pa~dV~gACST~~~AL~lAa~lI~SG~ad~VLVV~Ssh~s~ae 145 (337)
T PRK08304 91 ISANFAARELGI--PFLGLYGACSTMMESLALGSMLIDGGFADRVLAATSSHFATAE 145 (337)
T ss_pred chHHHHHHHhCC--cEEEEeccCHHHHHHHHHHHHHHhcCCCCEEEEEEcchhhhhh
Confidence 456678888886 9999999999999999999999999999999999999866654
No 94
>PRK08142 acetyl-CoA acetyltransferase; Provisional
Probab=98.04 E-value=1.8e-05 Score=57.72 Aligned_cols=51 Identities=25% Similarity=0.169 Sum_probs=46.5
Q ss_pred hHHHHHhCCCC-CcceecccchHHHHHHHHHHHHHHcCCCCEEEEEecCCCC
Q psy11966 16 KSNSPIFALAG-PCCTIDTACSSTLFGLHLAVGAIERGECDHAIIGGVNLTL 66 (99)
Q Consensus 16 ~~ia~~~~l~G-p~~tv~~acaS~~~Ai~~A~~~i~~G~~d~~l~gg~~~~~ 66 (99)
..++..+|+++ |...++.+|+|+..++..|+..|++|++|++||+|.|.+.
T Consensus 62 ~~~~~~lGl~~~~~~~v~~gg~s~~~a~~~A~~~I~sG~~d~vLvvg~e~~~ 113 (388)
T PRK08142 62 ASMVDYLGLKLRHVDSTETGGSSYLAHVGHAAQAIAAGKCSVALITLAGRPR 113 (388)
T ss_pred HHHHHhCCCCCeeeccccCCcHHHHHHHHHHHHHHHcCCCCEEEEEeeeecc
Confidence 35889999987 7888999999999999999999999999999999999843
No 95
>PRK06158 thiolase; Provisional
Probab=98.01 E-value=2.1e-05 Score=57.21 Aligned_cols=51 Identities=29% Similarity=0.169 Sum_probs=44.7
Q ss_pred HHhHHHHHhCCCC-CcceecccchHHHHHHHHHHHHHHcCCCCEEEEE-ecCC
Q psy11966 14 AAKSNSPIFALAG-PCCTIDTACSSTLFGLHLAVGAIERGECDHAIIG-GVNL 64 (99)
Q Consensus 14 ~~~~ia~~~~l~G-p~~tv~~acaS~~~Ai~~A~~~i~~G~~d~~l~g-g~~~ 64 (99)
....++..+|+++ |...+.++|+|+..++..|++.|++|++|++||. |.+.
T Consensus 63 ~~~~la~~lGl~~~~~~~~~~g~~s~~~al~~A~~~I~sG~~d~vLV~~g~~~ 115 (384)
T PRK06158 63 WGLSVAEYLGIRPRFVDGTMIGGSSFLAHLLPAALALEAGLCDVALICYGSNQ 115 (384)
T ss_pred cHHHHHHHcCCCCeeeccccCccHHHHHHHHHHHHHHHcCCCCEEEEeecccc
Confidence 3457999999977 7778899999999999999999999999999985 6664
No 96
>PLN02326 3-oxoacyl-[acyl-carrier-protein] synthase III
Probab=97.98 E-value=2.3e-05 Score=56.86 Aligned_cols=52 Identities=19% Similarity=0.298 Sum_probs=47.8
Q ss_pred HHhHHHHHhCCCC-CcceecccchHHHHHHHHHHHHHHcCCCCEEEEEecCCC
Q psy11966 14 AAKSNSPIFALAG-PCCTIDTACSSTLFGLHLAVGAIERGECDHAIIGGVNLT 65 (99)
Q Consensus 14 ~~~~ia~~~~l~G-p~~tv~~acaS~~~Ai~~A~~~i~~G~~d~~l~gg~~~~ 65 (99)
.+..+...+|+++ |.+.|+.+|++++.||..|.++|++|+.+.+|+++.|.+
T Consensus 134 ~a~~v~~~LG~~~~~~~dv~~~Ca~~~~aL~~A~~~l~~g~~~~vLVv~~e~~ 186 (379)
T PLN02326 134 SAPQVQAALGCTNALAFDLTAACSGFVLGLVTAARFIRGGGYKNVLVIGADAL 186 (379)
T ss_pred HHHHHHHHhCCCCCceeeccccchHHHHHHHHHHHHHHcCCCCEEEEEEechh
Confidence 4668999999977 778899999999999999999999999999999999984
No 97
>PRK07855 lipid-transfer protein; Provisional
Probab=97.81 E-value=7.5e-05 Score=54.45 Aligned_cols=47 Identities=11% Similarity=0.064 Sum_probs=42.7
Q ss_pred hHHHHHhCCCC-C-cceecccchHHHHHHHHHHHHHHcCCCCEEEEEec
Q psy11966 16 KSNSPIFALAG-P-CCTIDTACSSTLFGLHLAVGAIERGECDHAIIGGV 62 (99)
Q Consensus 16 ~~ia~~~~l~G-p-~~tv~~acaS~~~Ai~~A~~~i~~G~~d~~l~gg~ 62 (99)
..++..+|+++ + ...|..+|+|+..++..|+..|++|++|++||.|.
T Consensus 60 ~~l~~~lGl~~~~~~~~v~~gg~sg~~~~~~A~~~I~sG~~d~vLv~g~ 108 (386)
T PRK07855 60 IAVARALGIGELKFFSRIHYGGGAACATVQQAAMAVATGVADVVVCYRA 108 (386)
T ss_pred HHHHHHCCCCCCcceeeecCCcHHHHHHHHHHHHHHHCCCCCEEEEEee
Confidence 46889999987 3 45789999999999999999999999999999998
No 98
>PRK12404 stage V sporulation protein AD; Provisional
Probab=97.80 E-value=6.8e-05 Score=53.60 Aligned_cols=58 Identities=17% Similarity=0.255 Sum_probs=50.2
Q ss_pred chHHhHHHHHhCCCCCcceecccchHHHHHHHHHHHHHHcCCCCEEEEEecCCCCCHHHH
Q psy11966 12 PRAAKSNSPIFALAGPCCTIDTACSSTLFGLHLAVGAIERGECDHAIIGGVNLTLKPATS 71 (99)
Q Consensus 12 ~~~~~~ia~~~~l~Gp~~tv~~acaS~~~Ai~~A~~~i~~G~~d~~l~gg~~~~~~~~~~ 71 (99)
..++..++..+|+ |.+.|.+||+|+..|+..|...|++|..|.+|++-.+.+-+.+.-
T Consensus 88 ~ipssfvar~LGI--P~~gV~gACSTg~eAL~lAa~~VaSG~Ad~VLavtsSH~~~aErq 145 (334)
T PRK12404 88 ITPTSFAARTLGI--PYLGLFGACSTSMEGLALAALIVNSGGAKYVLTGASSHNAAVEKQ 145 (334)
T ss_pred cCcHHHHHHHhCC--CccceeecCHHHHHHHHHHHHHHHcCCCCEEEEEeCcccchhhhh
Confidence 3456688888885 779999999999999999999999999999999999887666543
No 99
>COG0332 FabH 3-oxoacyl-[acyl-carrier-protein]
Probab=97.73 E-value=9.2e-05 Score=52.99 Aligned_cols=54 Identities=28% Similarity=0.494 Sum_probs=50.9
Q ss_pred chHHhHHHHHhCCCC-CcceecccchHHHHHHHHHHHHHHcCCCCEEEEEecCCC
Q psy11966 12 PRAAKSNSPIFALAG-PCCTIDTACSSTLFGLHLAVGAIERGECDHAIIGGVNLT 65 (99)
Q Consensus 12 ~~~~~~ia~~~~l~G-p~~tv~~acaS~~~Ai~~A~~~i~~G~~d~~l~gg~~~~ 65 (99)
...+..|...||+++ +.+-+..+|++-+.|+..|..+|++|..+.+||.|.|..
T Consensus 89 Ps~A~~vq~~LG~~~~~afDl~aaCsgf~yaL~~A~~~i~sG~~k~vLVVg~e~~ 143 (323)
T COG0332 89 PSTACLVQARLGLGGAPAFDLQAACSGFLYALSVADGLIRSGGYKNVLVVGAETL 143 (323)
T ss_pred ChHHHHHHHHhCCCCcceeechhhhHHHHHHHHHHHHHHHcCCCCEEEEEehhHh
Confidence 457789999999999 999999999999999999999999999999999999985
No 100
>PRK06840 hypothetical protein; Validated
Probab=97.72 E-value=0.00011 Score=52.26 Aligned_cols=52 Identities=13% Similarity=0.098 Sum_probs=46.9
Q ss_pred HHhHHHHHhCCCC-CcceecccchHHHHHHHHHHHHHHc-CCCCEEEEEecCCC
Q psy11966 14 AAKSNSPIFALAG-PCCTIDTACSSTLFGLHLAVGAIER-GECDHAIIGGVNLT 65 (99)
Q Consensus 14 ~~~~ia~~~~l~G-p~~tv~~acaS~~~Ai~~A~~~i~~-G~~d~~l~gg~~~~ 65 (99)
.+.+|...+|++. +.+.+..+|++++.||..|.++|++ |+.+.+|+.+.|..
T Consensus 93 ~a~~l~~~lGl~~~~~~~v~~~C~~~~~al~~A~~~l~~~g~~~~~Lvv~~~~~ 146 (339)
T PRK06840 93 SAPKIQHEIGAKNAWAFDIMAVCASFPIALKVAKDLLYSDPSIENVLLVGGYRN 146 (339)
T ss_pred hHHHHHHHhCCCCcccccccccchHHHHHHHHHHHHHhcCCCccEEEEEeeccc
Confidence 4678999999976 7888999999999999999999999 99999999998763
No 101
>KOG1389|consensus
Probab=97.71 E-value=5.2e-05 Score=54.14 Aligned_cols=56 Identities=20% Similarity=0.276 Sum_probs=47.0
Q ss_pred hHHhHHHHHh-CC--CCCcceecccchHHHHHHHHHHHHHHcCCCCEEEEEecCCCCCH
Q psy11966 13 RAAKSNSPIF-AL--AGPCCTIDTACSSTLFGLHLAVGAIERGECDHAIIGGVNLTLKP 68 (99)
Q Consensus 13 ~~~~~ia~~~-~l--~Gp~~tv~~acaS~~~Ai~~A~~~i~~G~~d~~l~gg~~~~~~~ 68 (99)
....|++.++ |+ +-|..+|+.-|+||++|+..-+..|+.|.+|+-|++|+|++.+.
T Consensus 98 a~e~R~a~~~ag~P~tvpv~tvNRqCsSGLqaVadiA~~Ir~G~ydIGla~GvESMt~~ 156 (435)
T KOG1389|consen 98 ASECRMAAFYAGFPETVPVRTVNRQCSSGLQAVADIAAKIRAGFYDIGLAAGVESMTTN 156 (435)
T ss_pred hHHHHHHHHHcCCCcccchhhhhhhhhhHHHHHHHHHHHHhcCceeeecccchhhhccc
Confidence 4455666543 34 34899999999999999999999999999999999999997665
No 102
>PRK04262 hypothetical protein; Provisional
Probab=97.70 E-value=8.3e-05 Score=53.23 Aligned_cols=51 Identities=18% Similarity=0.272 Sum_probs=46.2
Q ss_pred HHhHHHHHhCCCC--CcceecccchHHHHHHHHHHHHHHcCCCCEEEEEecCC
Q psy11966 14 AAKSNSPIFALAG--PCCTIDTACSSTLFGLHLAVGAIERGECDHAIIGGVNL 64 (99)
Q Consensus 14 ~~~~ia~~~~l~G--p~~tv~~acaS~~~Ai~~A~~~i~~G~~d~~l~gg~~~ 64 (99)
.+.++...+|++. +.+.++.+|+++..++..|...|++|..+.+|+.+.|.
T Consensus 90 ~a~~v~~~Lgl~~~~~~~dv~~~C~~~~~aL~~A~~~i~sg~~~~aLVv~~e~ 142 (347)
T PRK04262 90 TATIVAEALGATPDLTAADLEFACKAGTAALQAAMGLVKSGMIKYALAIGADT 142 (347)
T ss_pred HHHHHHHHcCCCCCceEEEHHHhHHHHHHHHHHHHHHHHcCCCCEEEEEEEee
Confidence 4568889999975 67789999999999999999999999999999999997
No 103
>PF13723 Ketoacyl-synt_2: Beta-ketoacyl synthase, N-terminal domain
Probab=97.69 E-value=0.00019 Score=48.77 Aligned_cols=68 Identities=15% Similarity=0.088 Sum_probs=62.0
Q ss_pred CCcccccCCCcchHHhHHHHHhCCCCCcceecccchHHHHHHHHHHHHHHcCCCCEEEEEecCCCCCHH
Q psy11966 1 MTQFVLVAPSTPRAAKSNSPIFALAGPCCTIDTACSSTLFGLHLAVGAIERGECDHAIIGGVNLTLKPA 69 (99)
Q Consensus 1 ~~~~~~~~~~~~~~~~~ia~~~~l~Gp~~tv~~acaS~~~Ai~~A~~~i~~G~~d~~l~gg~~~~~~~~ 69 (99)
++|..|-...-|.+++.+++..+.++|.+++..+-.|-..|+..|+..+..| .+-+|++.+|..+...
T Consensus 80 lSPT~Fs~SVHNA~aG~~sI~~~~~~~~tal~a~~~sf~~aLleA~~~l~~~-~~~VLlv~~De~~p~~ 147 (218)
T PF13723_consen 80 LSPTAFSQSVHNAAAGYWSIATKNTGPNTALAAGEDSFEAALLEAAAQLAEG-AEPVLLVCYDEPLPEP 147 (218)
T ss_pred cCccchhhhhhhHHHHHHHHHhCCCCceEEEecCcchHHHHHHHHHHHHHcC-CCCEEEEEeCCCCChh
Confidence 5788888899999999999999999999999999999999999999999999 8888889999855544
No 104
>TIGR01835 HMG-CoA-S_prok 3-hydroxy-3-methylglutaryl CoA synthase, prokaryotic clade. This clade of hydroxymethylglutaryl-CoA (HMG-CoA) synthases is found in a limited spectrum of mostly gram-positive bacteria which make isopentenyl pyrophosphate (IPP) via the mevalonate pathway. This pathway is found primarily in eukaryotes and archaea, but the bacterial homologs are distinct, having aparrently diverged after being laterally transferred from an early eukaryote. HMG-CoA synthase is the first step in the pathway and joins acetyl-CoA with acetoacetyl-CoA with the release of one molecule of CoA. The Borellia sequence may have resulted from a separate lateral transfer event.
Probab=97.59 E-value=0.00022 Score=51.83 Aligned_cols=52 Identities=15% Similarity=0.220 Sum_probs=48.3
Q ss_pred hHHhHHHHHhCCCC--CcceecccchHHHHHHHHHHHHHHcCCCCEEEEEecCC
Q psy11966 13 RAAKSNSPIFALAG--PCCTIDTACSSTLFGLHLAVGAIERGECDHAIIGGVNL 64 (99)
Q Consensus 13 ~~~~~ia~~~~l~G--p~~tv~~acaS~~~Ai~~A~~~i~~G~~d~~l~gg~~~ 64 (99)
..+..|...||+.+ +.+-+..+|+++..|+..|.++|++|..+.+||.+.|.
T Consensus 85 s~a~~v~~~Lgl~~~~~~~dv~~aC~gg~~aL~~A~~~i~s~~~~~aLVv~~D~ 138 (379)
T TIGR01835 85 AAAVYVHGLLGLQPFCRSFELKQACYGATAALQMAKGHVALSPDRKVLVIASDI 138 (379)
T ss_pred CHHHHHHHHhCCCCCceEEEeccccHHHHHHHHHHHHHHHcCCCCeEEEEEeeh
Confidence 47789999999975 78889999999999999999999999999999999987
No 105
>TIGR00748 HMG_CoA_syn_Arc hydroxymethylglutaryl-CoA synthase, putative. Thus, although there is no experimental evidence supporting this name, the bioinformatics-based conclusion appears to be sound.
Probab=97.56 E-value=0.00018 Score=51.59 Aligned_cols=52 Identities=13% Similarity=0.263 Sum_probs=47.0
Q ss_pred HHhHHHHHhCCCC--CcceecccchHHHHHHHHHHHHHHcCCCCEEEEEecCCC
Q psy11966 14 AAKSNSPIFALAG--PCCTIDTACSSTLFGLHLAVGAIERGECDHAIIGGVNLT 65 (99)
Q Consensus 14 ~~~~ia~~~~l~G--p~~tv~~acaS~~~Ai~~A~~~i~~G~~d~~l~gg~~~~ 65 (99)
.+..+...+|++. +.+.+..+|+++..|+..|..+|++|..+.+|+.+.|..
T Consensus 89 ~a~~v~~~LGl~~~~~~~dv~~aC~g~~~al~~A~~~i~sg~~~~vLVv~~d~~ 142 (345)
T TIGR00748 89 TATIVAEAIGATPDLTAADLEFACKAGTAGIQACMGLVASGMIKYGLAIGADTA 142 (345)
T ss_pred hHHHHHHHcCCCCCceEEEHHHhHHHHHHHHHHHHHHHHcCCCCEEEEEEEeec
Confidence 4568999999963 788899999999999999999999999999999999975
No 106
>PRK08257 acetyl-CoA acetyltransferase; Validated
Probab=97.50 E-value=0.00042 Score=52.18 Aligned_cols=55 Identities=15% Similarity=0.039 Sum_probs=45.7
Q ss_pred hHHhHHHHHhCCCC-CcceecccchHHHHHHHHHHHHHHcCCCCEEEEEecCCCCC
Q psy11966 13 RAAKSNSPIFALAG-PCCTIDTACSSTLFGLHLAVGAIERGECDHAIIGGVNLTLK 67 (99)
Q Consensus 13 ~~~~~ia~~~~l~G-p~~tv~~acaS~~~Ai~~A~~~i~~G~~d~~l~gg~~~~~~ 67 (99)
..+..++..+|++. +......++.++..++.+|+..|++|++|++|++|+|.+.+
T Consensus 66 ~~~~~la~~lGl~p~~~~~~~~GG~s~~~~v~~Aa~~IasG~advVLv~G~E~~~~ 121 (498)
T PRK08257 66 DPPGLLAERLGADPARTVYSPVGGNSPQRLVNEAALRIAAGEADVALVAGAEAQST 121 (498)
T ss_pred CHHHHHHHHcCCCCcceeEecCCCHHHHHHHHHHHHHHHCCCCCEEEEeeeeeccc
Confidence 35578999999965 44445667888889999999999999999999999998543
No 107
>PF08545 ACP_syn_III: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III; InterPro: IPR013751 Fatty acid synthesis (FAS) is a vital aspect of cellular physiology which can occur by two distinct pathways. The FAS I pathway, which generally only produces palmitate, is found in eukaryotes and is performed either by a single polypeptide which contains all the reaction centres needed to form a fatty acid, or by two polypeptides which interact to form a multifunctional complex. The FAS II pathway, which is capable of producing many different fatty acids, is found in mitochondria, bacteria, plants and parasites, and is performed by many distinct proteins, each of which catalyses a single step within the pathway. The large diversity of products generated by this pathway is possible because the acyl carrier protein (ACP) intermediates are diffusible entities that can be diverted into other biosynthetic pathways []. 3-Oxoacyl-[acyl carrier protein (ACP)] synthase III catalyses the first condensation step within the FAS II pathway, using acetyl-CoA as the primer and malonyl-ACP as the acceptor, as shown below. Acyl-[ACP] + malonyl-[ACP] = 3-oxoacyl-[ACP] + CO(2) + [ACP] The oxoacyl-ACP formed by this reaction subsequently enters the elongation cycle, where the acyl chain is progressively lengthened by the combined activities of several enzymes. The enzymes studied so far are homodimers, where each monomer consists of two domains (N-terminal and C-terminal) which are similar in structure, but not in sequence [, ]. This entry represents a conserved region within the N-terminal domain.; GO: 0004315 3-oxoacyl-[acyl-carrier-protein] synthase activity, 0006633 fatty acid biosynthetic process; PDB: 1ZOW_C 1UB7_B 3IL7_A 3IL3_A 2X3E_B 4DFE_C 3LED_B 3ROW_B 3S23_A 3S1Z_A ....
Probab=97.43 E-value=0.00032 Score=40.19 Aligned_cols=38 Identities=26% Similarity=0.506 Sum_probs=32.9
Q ss_pred eecccchHHHHHHHHHHHHHHcCCCCEEEEEecCCCCC
Q psy11966 30 TIDTACSSTLFGLHLAVGAIERGECDHAIIGGVNLTLK 67 (99)
Q Consensus 30 tv~~acaS~~~Ai~~A~~~i~~G~~d~~l~gg~~~~~~ 67 (99)
-|+++|++.+.||..|..+|++|+.+-+|+.+.|....
T Consensus 2 Di~~~C~g~~~al~~A~~~i~~g~~~~~Lvv~~d~~s~ 39 (80)
T PF08545_consen 2 DINQACAGFLYALDVAAALIASGRAKNALVVGGDRLSR 39 (80)
T ss_dssp EEE-GGGHHHHHHHHHHHHHHTTS-SEEEEEEEEEGGG
T ss_pred cccccchHHHHHHHHHHHHHhhccCCEEEEEeeccccc
Confidence 36789999999999999999999999999999998544
No 108
>PRK06066 acetyl-CoA acetyltransferase; Provisional
Probab=97.43 E-value=0.00036 Score=51.00 Aligned_cols=48 Identities=21% Similarity=0.169 Sum_probs=40.9
Q ss_pred HHHHHhCCCC-CcceecccchHHHHHHHHHHHHHHcCCCCEEEEEecCCCCC
Q psy11966 17 SNSPIFALAG-PCCTIDTACSSTLFGLHLAVGAIERGECDHAIIGGVNLTLK 67 (99)
Q Consensus 17 ~ia~~~~l~G-p~~tv~~acaS~~~Ai~~A~~~i~~G~~d~~l~gg~~~~~~ 67 (99)
.++..+++.+ |.+.+ |+|+..++..|+..|++|++|++||.|.+.+..
T Consensus 69 ~~~~~lg~~~~~~~~v---~~sg~~a~~~A~~aV~sG~~d~vLv~g~~~~~~ 117 (385)
T PRK06066 69 FAPDQIGGAMRPTMTV---AGDGLQGLAHAVMHINSGLANVVVVEAHSKPSD 117 (385)
T ss_pred hHHHHcccCCCCeEEE---eCcHHHHHHHHHHHHHcCCCCEEEEEEEeeccC
Confidence 4667888854 77666 889999999999999999999999999997543
No 109
>KOG1392|consensus
Probab=97.40 E-value=5.6e-05 Score=53.62 Aligned_cols=60 Identities=23% Similarity=0.389 Sum_probs=49.2
Q ss_pred hHHhHHHHHhCC--CCCcceecccchHHHHHHHHHHHHHHcCCCCEEEEEecCCCCCHHHHH
Q psy11966 13 RAAKSNSPIFAL--AGPCCTIDTACSSTLFGLHLAVGAIERGECDHAIIGGVNLTLKPATSL 72 (99)
Q Consensus 13 ~~~~~ia~~~~l--~Gp~~tv~~acaS~~~Ai~~A~~~i~~G~~d~~l~gg~~~~~~~~~~~ 72 (99)
.++-..+-.-|+ +-|..||..+|-|+..|+..+..+|..|.+|+.++||+|.+.+.++..
T Consensus 104 niareaal~agfsdktpahtvtmacissn~amttgmgliatg~~dvivaggvelmsdvpirh 165 (465)
T KOG1392|consen 104 NIAREAALLAGFSDKTPAHTVTMACISSNVAMTTGMGLIATGNADVIVAGGVELMSDVPIRH 165 (465)
T ss_pred hHHHHHHHhcCCCCCCccceeeeehhccchhhhccceeEeeCCcCEEEEcceeecccCchhh
Confidence 344444444455 449999999999999999999999999999999999999987766544
No 110
>cd00831 CHS_like Chalcone and stilbene synthases; plant-specific polyketide synthases (PKS) and related enzymes, also called type III PKSs. PKS generate an array of different products, dependent on the nature of the starter molecule. They share a common chemical strategy, after the starter molecule is loaded onto the active site cysteine, a carboxylative condensation reation extends the polyketide chain. Plant-specific PKS are dimeric iterative PKSs, using coenzyme A esters to deliver substrate to the active site, but they differ in the choice of starter molecule and the number of condensation reactions.
Probab=97.33 E-value=0.00064 Score=48.83 Aligned_cols=56 Identities=18% Similarity=0.205 Sum_probs=48.9
Q ss_pred cchHHhHHHHHhCCCC--Ccceec-ccchHHHHHHHHHHHHHHcCCCCEEEEEecCCCC
Q psy11966 11 TPRAAKSNSPIFALAG--PCCTID-TACSSTLFGLHLAVGAIERGECDHAIIGGVNLTL 66 (99)
Q Consensus 11 ~~~~~~~ia~~~~l~G--p~~tv~-~acaS~~~Ai~~A~~~i~~G~~d~~l~gg~~~~~ 66 (99)
.-..+.+|...+|++. +.+-|. .+|++++.||..|..+|++|..+.+|+.++|...
T Consensus 120 ~P~~a~~i~~~lgl~~~~~~~dv~~~~C~~~~~al~~A~~~~~~~~~~~aLvv~~e~~s 178 (361)
T cd00831 120 TPSLDAMLINRLGLRPDVKRYNLGGMGCSAGAIALDLAKDLLEANPGARVLVVSTELCS 178 (361)
T ss_pred CCCHHHHHHHHhCCCcccchhccccccchhHHHHHHHHHHHHHHCCCCEEEEEEeeccc
Confidence 3346679999999974 677888 8999999999999999999999999999999853
No 111
>PLN02932 3-ketoacyl-CoA synthase
Probab=97.29 E-value=0.0008 Score=50.54 Aligned_cols=56 Identities=14% Similarity=0.182 Sum_probs=49.8
Q ss_pred cchHHhHHHHHhCCCC--Ccceec-ccchHHHHHHHHHHHHHHcCCCCEEEEEecCCCC
Q psy11966 11 TPRAAKSNSPIFALAG--PCCTID-TACSSTLFGLHLAVGAIERGECDHAIIGGVNLTL 66 (99)
Q Consensus 11 ~~~~~~~ia~~~~l~G--p~~tv~-~acaS~~~Ai~~A~~~i~~G~~d~~l~gg~~~~~ 66 (99)
.-..+.+|.+.+|++. ..+-++ .+|++++.+|..|.+.|+.+....+||.++|.+.
T Consensus 183 ~Pslaa~V~~~lGlr~~i~~fdL~gmGCSggl~aL~lA~~ll~~~~~~~aLVVstE~~S 241 (478)
T PLN02932 183 TPSLSSILVNKFKLRDNIKSLNLGGMGCSAGVIAIDAAKSLLQVHRNTYALVVSTENIT 241 (478)
T ss_pred CCcHHHHHHHHhCCCCCceEEEeccchhhhHHHHHHHHHHHHHcCCCCeEEEEEEeecc
Confidence 3457789999999974 788898 8999999999999999999999999999999843
No 112
>PLN02192 3-ketoacyl-CoA synthase
Probab=97.25 E-value=0.00084 Score=50.78 Aligned_cols=55 Identities=16% Similarity=0.226 Sum_probs=49.6
Q ss_pred chHHhHHHHHhCCCC--Ccceec-ccchHHHHHHHHHHHHHHcCCCCEEEEEecCCCC
Q psy11966 12 PRAAKSNSPIFALAG--PCCTID-TACSSTLFGLHLAVGAIERGECDHAIIGGVNLTL 66 (99)
Q Consensus 12 ~~~~~~ia~~~~l~G--p~~tv~-~acaS~~~Ai~~A~~~i~~G~~d~~l~gg~~~~~ 66 (99)
-..+.+|.+.+|++. +++-++ .+|++++.+|..|.+.|+.+....+||+++|...
T Consensus 212 PSlaa~I~n~lGlr~~i~afdLsgmGCSggl~aLdlA~~lL~a~~~~~aLVVstE~~S 269 (511)
T PLN02192 212 PSLSAMVINHYKLRGNILSYNLGGMGCSAGLISIDLAKHLLQVHPNSYALVISMENIT 269 (511)
T ss_pred chHHHHHHHHhCCCCCceEEEcccchhhhHHHHHHHHHHHHHcCCCCeEEEEEEEecc
Confidence 457789999999985 788898 6999999999999999999999999999999843
No 113
>PLN03168 chalcone synthase; Provisional
Probab=97.24 E-value=0.0014 Score=47.94 Aligned_cols=55 Identities=16% Similarity=0.178 Sum_probs=49.0
Q ss_pred chHHhHHHHHhCCCCC---cceecccchHHHHHHHHHHHHHHcCCCCEEEEEecCCCC
Q psy11966 12 PRAAKSNSPIFALAGP---CCTIDTACSSTLFGLHLAVGAIERGECDHAIIGGVNLTL 66 (99)
Q Consensus 12 ~~~~~~ia~~~~l~Gp---~~tv~~acaS~~~Ai~~A~~~i~~G~~d~~l~gg~~~~~ 66 (99)
-..+.+|...||++.- .+-+..+|+++..+|..|.+.|+++....+|+.++|.+.
T Consensus 137 Ps~a~~l~~~LGl~~~~~r~~d~~~gC~g~~~aL~~A~~~i~~~~~~~VLVV~~E~~S 194 (389)
T PLN03168 137 PGADHALAKLLGLKPTVKRVMMYQTGCFGGASVLRVAKDLAENNKGARVLAVASEVTA 194 (389)
T ss_pred ccHHHHHHHHhCcCCcceeeeeeCCccHHHHHHHHHHHHHHHhCCCCEEEEEEEehhh
Confidence 3467799999999873 578899999999999999999999999999999999853
No 114
>PRK12880 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=97.23 E-value=0.0012 Score=47.71 Aligned_cols=55 Identities=20% Similarity=0.279 Sum_probs=47.5
Q ss_pred CcchHHhHHHHHhCCCC--CcceecccchHHHHHHHHHHHHHHcCCCCEEEEEecCCC
Q psy11966 10 STPRAAKSNSPIFALAG--PCCTIDTACSSTLFGLHLAVGAIERGECDHAIIGGVNLT 65 (99)
Q Consensus 10 ~~~~~~~~ia~~~~l~G--p~~tv~~acaS~~~Ai~~A~~~i~~G~~d~~l~gg~~~~ 65 (99)
..-..+.+|...+|++. +.+-|..+|++++.++..|.++|++|..+ +++.+.|..
T Consensus 95 ~~P~~a~~v~~~Lg~~~~~~~~di~~~C~g~~~aL~~A~~~i~~~~~~-~LVv~~e~~ 151 (353)
T PRK12880 95 FMPSTACYLHQLLNLSSKTIAFDLGQACAGYLYGLFVAHSLIQSGLGK-ILLICGDTL 151 (353)
T ss_pred CCCcHHHHHHHHhCCCCCceEEehhhhhHHHHHHHHHHHHHHHcCCCC-EEEEEehhh
Confidence 34457889999999974 67889999999999999999999999999 888888763
No 115
>KOG1391|consensus
Probab=97.22 E-value=0.00027 Score=49.51 Aligned_cols=53 Identities=21% Similarity=0.270 Sum_probs=45.6
Q ss_pred HHHHHhCCC------CCcceecccchHHHHHHHHHHHHHHcCCCCEEEEEecCCCCCHH
Q psy11966 17 SNSPIFALA------GPCCTIDTACSSTLFGLHLAVGAIERGECDHAIIGGVNLTLKPA 69 (99)
Q Consensus 17 ~ia~~~~l~------Gp~~tv~~acaS~~~Ai~~A~~~i~~G~~d~~l~gg~~~~~~~~ 69 (99)
+++.+.||+ -|..+|++-|.|+.++|-.+++.|.-|+.+++|+||+|.+...+
T Consensus 67 Yl~RHvGL~~GvP~e~pALtiNRLCGSGFQsiVNgaQ~I~vgea~ivL~GGtEnMSq~P 125 (396)
T KOG1391|consen 67 YLARHVGLRVGVPKETPALTINRLCGSGFQSIVNGAQEICVGEAEIVLCGGTENMSQAP 125 (396)
T ss_pred EeeeccccccCCcCccCceeehhhhcccHHHHHhhHHHhhcCcceEEEecCccccccCc
Confidence 456666663 38999999999999999999999999999999999999965543
No 116
>PRK05963 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed
Probab=97.19 E-value=0.0015 Score=46.12 Aligned_cols=52 Identities=19% Similarity=0.271 Sum_probs=45.5
Q ss_pred hHHhHHHHHhCCCC-CcceecccchHHHHHHHHHHHHHHcCCCCEEEEEecCCC
Q psy11966 13 RAAKSNSPIFALAG-PCCTIDTACSSTLFGLHLAVGAIERGECDHAIIGGVNLT 65 (99)
Q Consensus 13 ~~~~~ia~~~~l~G-p~~tv~~acaS~~~Ai~~A~~~i~~G~~d~~l~gg~~~~ 65 (99)
..+.+|...+|++. +++.+..+|++++.||..|..+|+.+. +.+|+.+.|..
T Consensus 90 ~~a~~v~~~Lg~~~~~~~di~~~C~g~~~aL~~A~~~l~~~~-~~aLVv~~d~~ 142 (326)
T PRK05963 90 PSAPLLAHRLGLQNSGAIDLAGACAGFLYALVLADGFVRAQG-KPVLVVAANIL 142 (326)
T ss_pred cHHHHHHHHhCCCCCceeeccchhhHHHHHHHHHHHHHHcCC-CeEEEEEechh
Confidence 45678999999966 888899999999999999999999985 88898888873
No 117
>PLN02854 3-ketoacyl-CoA synthase
Probab=97.18 E-value=0.001 Score=50.42 Aligned_cols=55 Identities=15% Similarity=0.213 Sum_probs=49.2
Q ss_pred chHHhHHHHHhCCCC--Ccceec-ccchHHHHHHHHHHHHHHcCCCCEEEEEecCCCC
Q psy11966 12 PRAAKSNSPIFALAG--PCCTID-TACSSTLFGLHLAVGAIERGECDHAIIGGVNLTL 66 (99)
Q Consensus 12 ~~~~~~ia~~~~l~G--p~~tv~-~acaS~~~Ai~~A~~~i~~G~~d~~l~gg~~~~~ 66 (99)
-..+.+|.+.+|++. .++-++ .+|++++.+|..|.+.|+.+....+||.++|.+.
T Consensus 224 PSlAa~I~n~LGlr~~i~afdLsgmGCSggl~aL~lA~~lL~~~~~~~aLVVstE~~S 281 (521)
T PLN02854 224 PSLSAMIVNHYKLRTDIKSYNLGGMGCSAGLISIDLANDLLKANPNSYAVVVSTENIT 281 (521)
T ss_pred CCHHHHHHHHhCCCCCceEEecccchhhhHHHHHHHHHHHHHhCCCCeEEEEEEeeee
Confidence 357889999999984 577787 8999999999999999999999999999999854
No 118
>PLN02377 3-ketoacyl-CoA synthase
Probab=97.16 E-value=0.0013 Score=49.76 Aligned_cols=54 Identities=15% Similarity=0.242 Sum_probs=49.2
Q ss_pred chHHhHHHHHhCCCC--Ccceec-ccchHHHHHHHHHHHHHHcCCCCEEEEEecCCC
Q psy11966 12 PRAAKSNSPIFALAG--PCCTID-TACSSTLFGLHLAVGAIERGECDHAIIGGVNLT 65 (99)
Q Consensus 12 ~~~~~~ia~~~~l~G--p~~tv~-~acaS~~~Ai~~A~~~i~~G~~d~~l~gg~~~~ 65 (99)
-..+.+|.+.||++. ..+-++ .+|++++.+|..|.+.|+.+....+||.++|..
T Consensus 208 PSlaa~V~~~LGlr~~v~afdL~gmGCsggl~aL~lA~~ll~~~~~~~aLVVstE~~ 264 (502)
T PLN02377 208 PSLSAMIVNKYKLRGNIRSFNLGGMGCSAGVIAVDLAKDMLQVHRNTYAVVVSTENI 264 (502)
T ss_pred CcHHHHHHHHhCCCCCCeEEecccchhhHHHHHHHHHHHHHHcCCCCEEEEEEEecc
Confidence 357889999999985 788888 699999999999999999999999999999984
No 119
>PLN03172 chalcone synthase family protein; Provisional
Probab=97.02 E-value=0.0022 Score=47.04 Aligned_cols=54 Identities=15% Similarity=0.115 Sum_probs=47.6
Q ss_pred hHHhHHHHHhCCCCCc---ceecccchHHHHHHHHHHHHHHcCCCCEEEEEecCCCC
Q psy11966 13 RAAKSNSPIFALAGPC---CTIDTACSSTLFGLHLAVGAIERGECDHAIIGGVNLTL 66 (99)
Q Consensus 13 ~~~~~ia~~~~l~Gp~---~tv~~acaS~~~Ai~~A~~~i~~G~~d~~l~gg~~~~~ 66 (99)
..+.+|...+|++.-. ..+..+|+++..+|..|.+.++.+..+.+|+.++|.+.
T Consensus 139 ~~a~~l~~~LGl~~~~~~~~~~~~gC~g~~~aL~~A~~~~~~~~~~~vLVV~~E~~S 195 (393)
T PLN03172 139 GADYQLTKLLGLKPSVKRFMMYQQGCFAGGTVLRLAKDLAENNAGSRVLVVCSEITA 195 (393)
T ss_pred hHHHHHHHHhCCCCCceEEeeeCCchHHHHHHHHHHHHHHHcCCCCeEEEEEEehhh
Confidence 4777999999998743 45689999999999999999999999999999999854
No 120
>PLN03169 chalcone synthase family protein; Provisional
Probab=96.96 E-value=0.0033 Score=46.01 Aligned_cols=54 Identities=17% Similarity=0.173 Sum_probs=47.3
Q ss_pred chHHhHHHHHhCCCCC---cceecccchHHHHHHHHHHHHHHcCCCCEEEEEecCCC
Q psy11966 12 PRAAKSNSPIFALAGP---CCTIDTACSSTLFGLHLAVGAIERGECDHAIIGGVNLT 65 (99)
Q Consensus 12 ~~~~~~ia~~~~l~Gp---~~tv~~acaS~~~Ai~~A~~~i~~G~~d~~l~gg~~~~ 65 (99)
...+..|...+|++.. .+-+..+|++++.+|..|..+|+.|..+.+|+.++|..
T Consensus 142 P~~a~~l~~~LGl~~~~~~~~d~~~gC~g~~~aL~~A~~~~~~~~~~~vLvv~~e~~ 198 (391)
T PLN03169 142 PGGDLYLAKQLGLSPDVQRVMLYFLGCSGGVAGLRVAKDIAENNPGSRVLLTTSETT 198 (391)
T ss_pred CcHHHHHHHHhCcCCcceeeecccChhHHHHHHHHHHHHHHHhCCCCeEEEEEEEcC
Confidence 3456689999999763 46788999999999999999999999999999999984
No 121
>PLN03170 chalcone synthase; Provisional
Probab=96.96 E-value=0.0022 Score=47.13 Aligned_cols=54 Identities=13% Similarity=0.087 Sum_probs=48.5
Q ss_pred hHHhHHHHHhCCCCC---cceecccchHHHHHHHHHHHHHHcCCCCEEEEEecCCCC
Q psy11966 13 RAAKSNSPIFALAGP---CCTIDTACSSTLFGLHLAVGAIERGECDHAIIGGVNLTL 66 (99)
Q Consensus 13 ~~~~~ia~~~~l~Gp---~~tv~~acaS~~~Ai~~A~~~i~~G~~d~~l~gg~~~~~ 66 (99)
..+.+|...||++.- .+-+..+|+++..+|..|.+.++.+..+.+|+.++|.+.
T Consensus 143 s~a~~l~~~LGl~~~~~r~~d~~~gC~G~~~aL~~A~~l~~~~~~~~vLVV~~E~~S 199 (401)
T PLN03170 143 GADYQLTKMLGLRPSVNRLMMYQQGCFAGGTVLRVAKDLAENNRGARVLVVCSEITA 199 (401)
T ss_pred hHHHHHHHHhCcCcccHHHHhhcChhHHHHHHHHHHHHHHHcCCCCeEEEEEEehhh
Confidence 467799999999874 578999999999999999999999999999999999854
No 122
>PLN03173 chalcone synthase; Provisional
Probab=96.93 E-value=0.0026 Score=46.61 Aligned_cols=54 Identities=15% Similarity=0.124 Sum_probs=47.6
Q ss_pred hHHhHHHHHhCCCCC---cceecccchHHHHHHHHHHHHHHcCCCCEEEEEecCCCC
Q psy11966 13 RAAKSNSPIFALAGP---CCTIDTACSSTLFGLHLAVGAIERGECDHAIIGGVNLTL 66 (99)
Q Consensus 13 ~~~~~ia~~~~l~Gp---~~tv~~acaS~~~Ai~~A~~~i~~G~~d~~l~gg~~~~~ 66 (99)
..+.+|...+|++.- ..-+..+|+++..+|..|.+.++.+..+.+|+.++|.+.
T Consensus 139 ~~a~~l~~~LGl~~~~~~~~~~~~gC~g~~~aL~~A~~~~~~~~~~~vLVV~~E~~S 195 (391)
T PLN03173 139 GADYQLTKLLGLRSSVKRFMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEITA 195 (391)
T ss_pred HHHHHHHHHhCCCccceeeehhcCccHHHHHHHHHHHHHHHhCCCCeEEEEEEehhh
Confidence 467789999999874 346799999999999999999999999999999999844
No 123
>PF08392 FAE1_CUT1_RppA: FAE1/Type III polyketide synthase-like protein; InterPro: IPR013601 This domain is found in proteins that are described as 3-ketoacyl-CoA synthases, type III polyketide synthases, fatty acid elongases and fatty acid condensing enzymes, and are found in both prokaryotic and eukaryotic (mainly plant) species. The region contains the active site residues, as well as motifs involved in substrate binding []. ; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups, 0006633 fatty acid biosynthetic process, 0016020 membrane
Probab=96.87 E-value=0.0025 Score=45.08 Aligned_cols=67 Identities=12% Similarity=0.097 Sum_probs=53.1
Q ss_pred cchHHhHHHHHhCCCCCccee---cccchHHHHHHHHHHHHHHcCCCCEEEEEecCCCCCHHHHHHHHHcc
Q psy11966 11 TPRAAKSNSPIFALAGPCCTI---DTACSSTLFGLHLAVGAIERGECDHAIIGGVNLTLKPATSLMYHKYN 78 (99)
Q Consensus 11 ~~~~~~~ia~~~~l~Gp~~tv---~~acaS~~~Ai~~A~~~i~~G~~d~~l~gg~~~~~~~~~~~~~~~~~ 78 (99)
.-.++.+|.+.||++.-..+. ..||++|+.+|..|.+.++...-..+|+..+|.. ++..+.+-++..
T Consensus 118 tPSLsamIvnr~~mr~di~~~nLsGMGCsAgliai~lA~~lL~~~p~~~ALVVstE~~-s~~~Y~G~~rsm 187 (290)
T PF08392_consen 118 TPSLSAMIVNRYGMRSDIKSYNLSGMGCSAGLIAIDLAKDLLQAHPNSYALVVSTENI-SANWYRGNDRSM 187 (290)
T ss_pred CCcHHHHHHHHhCCCcCeeeecccCCcchhhHHHHHHHHHHHHhCCCcEEEEEEEeec-ccccccCCcHHH
Confidence 346888999999999855553 3699999999999999999999999999999994 444444444433
No 124
>PLN03171 chalcone synthase-like protein; Provisional
Probab=96.59 E-value=0.0082 Score=44.08 Aligned_cols=53 Identities=15% Similarity=0.154 Sum_probs=46.2
Q ss_pred hHHhHHHHHhCCCCC---cceecccchHHHHHHHHHHHHHHcCCCCEEEEEecCCC
Q psy11966 13 RAAKSNSPIFALAGP---CCTIDTACSSTLFGLHLAVGAIERGECDHAIIGGVNLT 65 (99)
Q Consensus 13 ~~~~~ia~~~~l~Gp---~~tv~~acaS~~~Ai~~A~~~i~~G~~d~~l~gg~~~~ 65 (99)
..+..+...||++.- ..-+..+|++++.+|..|.++|++|..+.+|+.++|..
T Consensus 145 ~~a~~v~~~LGl~~~~~~~~~~~~gC~g~~~aL~~A~~li~~~~~~~vLVv~~e~~ 200 (399)
T PLN03171 145 GVDFRLVPLLGLRPSVRRTMLHLNGCFAGAAALRLAKDLAENNRGARVLVVAAEIT 200 (399)
T ss_pred chHHHHHHHhCCCcccceeeccCCccHHHHHHHHHHHHHHHhCCCCeEEEEEEecc
Confidence 456689999999763 34566799999999999999999999999999999984
No 125
>PLN00415 3-ketoacyl-CoA synthase
Probab=96.36 E-value=0.014 Score=43.86 Aligned_cols=55 Identities=15% Similarity=0.192 Sum_probs=47.8
Q ss_pred chHHhHHHHHhCCCC--Ccceecc-cchHHHHHHHHHHHHHHcCCCCEEEEEecCCCC
Q psy11966 12 PRAAKSNSPIFALAG--PCCTIDT-ACSSTLFGLHLAVGAIERGECDHAIIGGVNLTL 66 (99)
Q Consensus 12 ~~~~~~ia~~~~l~G--p~~tv~~-acaS~~~Ai~~A~~~i~~G~~d~~l~gg~~~~~ 66 (99)
-..+.++...+|++. ..+-++. +|+++..+|..|.+.++.+....+|+.++|.+.
T Consensus 170 Pslaa~l~~~LGLr~~v~~~dL~gmGCsggv~aL~lA~~ll~a~~~~~aLVVs~E~~S 227 (466)
T PLN00415 170 PSLSSMIVNRYKLKTDVKTYNLSGMGCSAGAISVDLATNLLKANPNTYAVIVSTENMT 227 (466)
T ss_pred chHHHHHHHHhCCCCCceEEEeccccchHHHHHHHHHHHHHHhCCCCEEEEEEEeccc
Confidence 346778999999983 5666886 999999999999999999999999999999843
No 126
>PRK07937 lipid-transfer protein; Provisional
Probab=95.79 E-value=0.017 Score=41.81 Aligned_cols=45 Identities=16% Similarity=0.141 Sum_probs=34.9
Q ss_pred HHHHhCCC-C-CcceecccchHHHHHHHHHHHHHHcCCCCEEEEEecCCC
Q psy11966 18 NSPIFALA-G-PCCTIDTACSSTLFGLHLAVGAIERGECDHAIIGGVNLT 65 (99)
Q Consensus 18 ia~~~~l~-G-p~~tv~~acaS~~~Ai~~A~~~i~~G~~d~~l~gg~~~~ 65 (99)
+....|+. + |...++ ++|..|+..|+..|++|++|++||.|.|.+
T Consensus 67 ~~~~~G~~~~~~~~~v~---~~g~~a~~~A~~aI~sG~~d~VLv~g~~k~ 113 (352)
T PRK07937 67 AIDSIGAVPPINESHVE---MDAAWALYEAWVKLLTGEVDTALVYGFGKS 113 (352)
T ss_pred HHhhccCCCCCceEEec---CcHHHHHHHHHHHHhcCCCCEEEEEEeccc
Confidence 44556663 2 344445 468889999999999999999999999975
No 127
>PLN02577 hydroxymethylglutaryl-CoA synthase
Probab=95.66 E-value=0.035 Score=41.68 Aligned_cols=52 Identities=10% Similarity=-0.022 Sum_probs=41.8
Q ss_pred HHhHHH---HHhCCCC-CcceecccchHHHHHHHHHHHHHHcCCC--CEEEEEecCCC
Q psy11966 14 AAKSNS---PIFALAG-PCCTIDTACSSTLFGLHLAVGAIERGEC--DHAIIGGVNLT 65 (99)
Q Consensus 14 ~~~~ia---~~~~l~G-p~~tv~~acaS~~~Ai~~A~~~i~~G~~--d~~l~gg~~~~ 65 (99)
.+..|. ..+|.+. +++-+..+|.++..||..|.++|++|.. +-+||.+.|..
T Consensus 92 ~A~~v~~ll~~LG~~~~~afDi~~AC~G~~~AL~~A~~~i~sg~~~~~~aLVV~aD~a 149 (459)
T PLN02577 92 IKTFLMQLFEESGNTDIEGVDSTNACYGGTAALLNCVNWVESSSWDGRYGLVVAADSA 149 (459)
T ss_pred hHHHHHHHHHHhCCCCcEEeehhhhhHHHHHHHHHHHHHHHcCCCCCCeEEEEEechh
Confidence 344454 4555554 6777899999999999999999999985 89999999983
No 128
>TIGR01833 HMG-CoA-S_euk 3-hydroxy-3-methylglutaryl-CoA-synthase, eukaryotic clade. Hydroxymethylglutaryl(HMG)-CoA synthase is the first step of isopentenyl pyrophosphate (IPP) biosynthesis via the mevalonate pathway. This pathway is found mainly in eukaryotes, but also in archaea and some bacteria. This model is specific for eukaryotes.
Probab=95.61 E-value=0.042 Score=41.20 Aligned_cols=52 Identities=15% Similarity=0.142 Sum_probs=42.2
Q ss_pred HHhHHHHHhCC---CC-CcceecccchHHHHHHHHHHHHHHcCCC--CEEEEEecCCC
Q psy11966 14 AAKSNSPIFAL---AG-PCCTIDTACSSTLFGLHLAVGAIERGEC--DHAIIGGVNLT 65 (99)
Q Consensus 14 ~~~~ia~~~~l---~G-p~~tv~~acaS~~~Ai~~A~~~i~~G~~--d~~l~gg~~~~ 65 (99)
.+..|...|++ +. .++-+..+|+++..||..|..+|++|.. +-+||.+.|..
T Consensus 89 ~a~~v~~lL~~lG~~~~~~fDi~~AC~G~t~AL~~A~~~i~s~~~~~~~aLVV~sDia 146 (454)
T TIGR01833 89 VKTVLMQLFEESGNTDVEGIDTTNACYGGTAALFNAINWIESSSWDGRYALVVAGDIA 146 (454)
T ss_pred hHHHHHHHHHhcCCCCceEEeccccchhHHHHHHHHHHHHHcCCcCCCeEEEEEeccc
Confidence 55567775554 33 5667889999999999999999999974 89999999983
No 129
>PF01154 HMG_CoA_synt_N: Hydroxymethylglutaryl-coenzyme A synthase N terminal; InterPro: IPR013528 Synonym(s): 3-hydroxy-3-methylglutaryl-coenzyme A synthase, HMG-CoA synthase. Hydroxymethylglutaryl-CoA synthase (2.3.3.10 from EC) catalyses the condensation of acetyl-CoA with acetoacetyl-CoA to produce HMG-CoA and CoA, the second reaction in the mevalonate-dependent isoprenoid biosynthesis pathway. HMG-CoA synthase contains an important catalytic cysteine residue that acts as a nucleophile in the first step of the reaction: the acetylation of the enzyme by acetyl-CoA (its first substrate) to produce an acetyl-enzyme thioester, releasing the reduced coenzyme A. The subsequent nucleophilic attack on acetoacetyl-CoA (its second substrate) leads to the formation of HMG-CoA []. HMG-CoA synthase occurs in eukaryotes, archaea and certain bacteria []. In vertebrates, there are two isozymes located in different subcellular compartments: a cytosolic form that is the starting point of the mevalonate pathway (leads to cholesterol and other sterolic and isoprenoid compounds), and a mitochondrial form responsible for ketone body biosynthesis. HMG-CoA is also found in other eukaryotes such as insects, plants and fungi []. In bacteria, isoprenoid precursors are generally synthesised via an alternative, non-mevalonate pathway, however a number of Gram-positive pathogens utilise a mevalonate pathway involving HMG-CoA synthase that is parallel to that found in eukaryotes [, ]. This entry represents the N-terminal domain of HMG-CoA synthase enzymes from both eukaryotes and prokaryotes.; GO: 0004421 hydroxymethylglutaryl-CoA synthase activity, 0008299 isoprenoid biosynthetic process; PDB: 1X9E_B 2HDB_B 2WYA_C 2P8U_A 3V4X_A 3V4N_C 3LEH_A 1TXT_D 1TVZ_A 2FA0_A ....
Probab=95.47 E-value=0.07 Score=35.17 Aligned_cols=52 Identities=19% Similarity=0.364 Sum_probs=42.7
Q ss_pred HHhHHHHHhCCCCC--c--ceecccchHHHHHHHHHHHHHHcCCCC--EEEEEecCCC
Q psy11966 14 AAKSNSPIFALAGP--C--CTIDTACSSTLFGLHLAVGAIERGECD--HAIIGGVNLT 65 (99)
Q Consensus 14 ~~~~ia~~~~l~Gp--~--~tv~~acaS~~~Ai~~A~~~i~~G~~d--~~l~gg~~~~ 65 (99)
++..+...|++.+. + +-+-.||-+|..||..|+.+|+++..| .+||.+.|..
T Consensus 92 ~~t~v~~ll~~s~~~~~~~~e~k~ACygGTaAL~~a~~~v~s~~~~g~~aLVVasDiA 149 (174)
T PF01154_consen 92 ISTYVHQLLGLSGNPDCRGVEMKQACYGGTAALQNAVNWVASSPWDGRKALVVASDIA 149 (174)
T ss_dssp HHHHHHHHTTTTT-SSSEEEEEESGGGHHHHHHHHHHHHHCSTTSTTEEEEEEEEEEE
T ss_pred HHHHHHHHhCcCCCCceeeeehhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEecccc
Confidence 67788999999663 2 345689999999999999999998654 8999998863
No 130
>COG3425 PksG 3-hydroxy-3-methylglutaryl CoA synthase [Lipid metabolism]
Probab=94.38 E-value=0.1 Score=38.28 Aligned_cols=53 Identities=19% Similarity=0.282 Sum_probs=46.1
Q ss_pred HHhHHHHHhCCCCCcce--ecccchHHHHHHHHHHHHHHcCCCCEEEEEecCCCC
Q psy11966 14 AAKSNSPIFALAGPCCT--IDTACSSTLFGLHLAVGAIERGECDHAIIGGVNLTL 66 (99)
Q Consensus 14 ~~~~ia~~~~l~Gp~~t--v~~acaS~~~Ai~~A~~~i~~G~~d~~l~gg~~~~~ 66 (99)
.+..|+..||++--..+ +..||-+|..||..|..+|.+|..+-+||.|.|...
T Consensus 90 ~at~v~~~lg~~~~~~~~d~~~AC~agT~aL~~a~~~v~s~~~~~~LvI~sD~a~ 144 (377)
T COG3425 90 TATIVAEALGLNPSARAADVEFACYAGTAALQAAIGWVESGMISYGLVIGADTAQ 144 (377)
T ss_pred hHHHHHHHhCCCCceehhhHHHHHHHHHHHHHHHHHHHHcCCccceEEEeehhhc
Confidence 56688899999886666 456999999999999999999999999999999743
No 131
>PF07451 SpoVAD: Stage V sporulation protein AD (SpoVAD); InterPro: IPR010894 This family contains the bacterial stage V sporulation protein AD (SpoVAD), which is approximately 340 residues long. This is one of six proteins encoded by the spoVA operon, which is transcribed exclusively in the forespore at about the time of dipicolinic acid (DPA) synthesis in the mother cell. The functions of the proteins encoded by the spoVA operon are unknown, but it has been suggested they are involved in DPA transport during sporulation [].; PDB: 3LMA_D 3LM6_A.
Probab=93.84 E-value=0.23 Score=35.68 Aligned_cols=58 Identities=16% Similarity=0.185 Sum_probs=44.1
Q ss_pred hHHhHHHHHhCCCCCcceecccchHHHHHHHHHHHHHHcCCCCEEEEEecCCCCCHHHHH
Q psy11966 13 RAAKSNSPIFALAGPCCTIDTACSSTLFGLHLAVGAIERGECDHAIIGGVNLTLKPATSL 72 (99)
Q Consensus 13 ~~~~~ia~~~~l~Gp~~tv~~acaS~~~Ai~~A~~~i~~G~~d~~l~gg~~~~~~~~~~~ 72 (99)
..++..+..|++ |-+=+..||++...++.+|...|..|-.|.++++-.+.+.+.+.-+
T Consensus 86 i~s~f~ar~l~i--Pf~GlygACST~~e~l~laa~~vdgg~a~~vla~tSSH~~tAERQf 143 (329)
T PF07451_consen 86 ISSSFAARDLGI--PFLGLYGACSTMMESLALAAMLVDGGFADYVLAATSSHFATAERQF 143 (329)
T ss_dssp CHHHHHHHHHT----EEEB--CCCHHHHHHHHHHHHHHTTS-SEEEEEEEE-CCHHHHHT
T ss_pred HHHHHHHHhcCC--CccchhhHHHHHHHHHHHHHHHHhCCCcceEEEEeccccchhhhhc
Confidence 455677777766 8899999999999999999999999999999999998876665443
No 132
>PF00195 Chal_sti_synt_N: Chalcone and stilbene synthases, N-terminal domain; InterPro: IPR001099 Synonym(s): Chalcone synthase, Flavonone synthase, 6'-deoxychalcone synthase Naringenin-chalcone synthases (2.3.1.74 from EC) and stilbene synthases (STS) (formerly known as resveratrol synthases) are related plant enzymes. CHS is an important enzyme in flavanoid biosynthesis and STS is a key enzyme in stilbene-type phyloalexin biosynthesis. Both enzymes catalyse the addition of three molecules of malonyl-CoA to a starter CoA ester (a typical example is 4-coumaroyl-CoA), producing either a chalcone (with CHS) or stilbene (with STS) []. These enzymes have a conserved cysteine residue, located in the central section of the protein sequence, which is essential for the catalytic activity of both enzymes and probably represents the binding site for the 4-coumaryl-CoA group [].; GO: 0016746 transferase activity, transferring acyl groups, 0009058 biosynthetic process; PDB: 3EUO_B 3EUT_C 3EUQ_D 3E1H_A 3AWK_A 3AWJ_A 2H84_A 3A5S_A 3A5Q_B 3A5R_A ....
Probab=92.23 E-value=0.53 Score=32.30 Aligned_cols=59 Identities=14% Similarity=0.110 Sum_probs=44.3
Q ss_pred CCCcchHHhHHHHHhCCCCCcce---ecccchHHHHHHHHHHHHHHcCCCCEEEEEecCCCC
Q psy11966 8 APSTPRAAKSNSPIFALAGPCCT---IDTACSSTLFGLHLAVGAIERGECDHAIIGGVNLTL 66 (99)
Q Consensus 8 ~~~~~~~~~~ia~~~~l~Gp~~t---v~~acaS~~~Ai~~A~~~i~~G~~d~~l~gg~~~~~ 66 (99)
|...-.+-.++...+||+..... ...||..|..+|..|.+..+...-..+|+..+|.+.
T Consensus 132 G~~~PglD~~l~~~LgL~~~v~R~~i~~~GC~gg~~~L~~A~~~~~~~p~a~VLvv~vElcs 193 (226)
T PF00195_consen 132 GIAAPGLDARLINRLGLRPDVQRTPIFGMGCAGGAAGLRRAKDIARANPGARVLVVCVELCS 193 (226)
T ss_dssp SSECS-HHHHHHHHHT--TTSEEEEEES-GGGHHHHHHHHHHHHHHHSTT-EEEEEEEEEGG
T ss_pred CcCCCchhHHHHhcCCCCCCcEEEEEeccchhhHHHHHHHHHHHHhCCccceEEEEEEEeeE
Confidence 33344455689999999885544 456999999999999999999999999999999854
No 133
>COG3424 BcsA Predicted naringenin-chalcone synthase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=86.10 E-value=2.7 Score=30.46 Aligned_cols=59 Identities=15% Similarity=0.124 Sum_probs=47.9
Q ss_pred CCCcchHHhHHHHHhCCCCCccee---cccchHHHHHHHHHHHHHHcCCCCEEEEEecCCCC
Q psy11966 8 APSTPRAAKSNSPIFALAGPCCTI---DTACSSTLFGLHLAVGAIERGECDHAIIGGVNLTL 66 (99)
Q Consensus 8 ~~~~~~~~~~ia~~~~l~Gp~~tv---~~acaS~~~Ai~~A~~~i~~G~~d~~l~gg~~~~~ 66 (99)
|...-.+=.+|...+|+.-....+ .-+|+.|..++..|.+..|....+.+++..+|.+.
T Consensus 108 G~~~Ps~dari~~~Lgl~p~~~Rvpv~glGCaaga~glara~~y~ra~P~~~vlvV~vELCS 169 (356)
T COG3424 108 GLATPSLDARIVGELGLSPDTRRVPVWGLGCAAGAAGLARARDYCRAAPDANVLVVCVELCS 169 (356)
T ss_pred cccCCChhHHHHhhcCCCCccceeeeecchhhhhhhHHHHHHHHHhhCccceEEEEEeeeee
Confidence 334445667899999997644443 46999999999999999999999999999999864
No 134
>PF04422 FrhB_FdhB_N: Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term; InterPro: IPR007516 Coenzyme F420 hydrogenase (1.12.99.1 from EC) reduces the low-potential two-electron acceptor coenzyme F420. This entry contains the N termini of F420 hydrogenase and dehydrogenase beta subunits [, ]. The N terminus of Methanobacterium formicicum formate dehydrogenase beta chain (1.2.1.2 from EC, P06130 from SWISSPROT) is also represented in this entry []. This region is often found in association with the 4Fe-4S binding domain, fer4 (IPR001450 from INTERPRO), and the C terminus IPR007525 from INTERPRO.
Probab=78.92 E-value=4.7 Score=23.01 Aligned_cols=33 Identities=21% Similarity=0.161 Sum_probs=28.1
Q ss_pred ecccchHHHHHHHHHHHHHHcCCCCEEEEEecC
Q psy11966 31 IDTACSSTLFGLHLAVGAIERGECDHAIIGGVN 63 (99)
Q Consensus 31 v~~acaS~~~Ai~~A~~~i~~G~~d~~l~gg~~ 63 (99)
|-..++||...-.++..+|++|.+|.+|+.+.+
T Consensus 13 ir~~~~sGG~vTaLl~~lLe~g~Vd~vv~~~~~ 45 (82)
T PF04422_consen 13 IREKSQSGGVVTALLAYLLESGLVDGVVVVGRD 45 (82)
T ss_pred hcccCCcHHHHHHHHHHHHHcCCceEEEEEeec
Confidence 345678888889999999999999999999943
No 135
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=61.13 E-value=4.2 Score=18.54 Aligned_cols=11 Identities=36% Similarity=0.594 Sum_probs=9.1
Q ss_pred cccCCCCCcee
Q psy11966 87 SPFDASGVGHR 97 (99)
Q Consensus 87 ~pfd~~~~G~v 97 (99)
+-||++.||++
T Consensus 7 ~~~D~d~dG~I 17 (29)
T PF00036_consen 7 REFDKDGDGKI 17 (29)
T ss_dssp HHHSTTSSSEE
T ss_pred HHHCCCCCCcC
Confidence 45899999986
No 136
>TIGR02706 P_butyryltrans phosphate butyryltransferase. Members of this family are phosphate butyryltransferase, also called phosphotransbutyrylase. In general, this enzyme is found in butyrate-producing anaerobic bacteria, encoded next to the gene for butyrate kinase. Together, these two enzymes represent what may be the less common of two pathways for butyrate production from butyryl-CoA. The alternative is transfer of the CoA group to acetate by butyryl-CoA:acetate CoA transferase. Cutoffs for this model are set such that the homolog from Thermotoga maritima, whose activity on butyryl-CoA is only 30 % of its activity with acetyl-CoA, scores in the zone between trusted and noice cutoffs.
Probab=54.16 E-value=17 Score=25.74 Aligned_cols=24 Identities=29% Similarity=0.328 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHcCCCCEEEEEecC
Q psy11966 40 FGLHLAVGAIERGECDHAIIGGVN 63 (99)
Q Consensus 40 ~Ai~~A~~~i~~G~~d~~l~gg~~ 63 (99)
.++..|.++++.|++|.++.||++
T Consensus 74 ~s~~~a~~lv~~G~aD~~vsg~~~ 97 (294)
T TIGR02706 74 KAALLAVRLVSTGKADMLMKGLVD 97 (294)
T ss_pred HHHHHHHHHHHCCCCCEEEeCCcC
Confidence 368889999999999999998875
No 137
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=53.57 E-value=29 Score=22.58 Aligned_cols=50 Identities=18% Similarity=0.121 Sum_probs=36.6
Q ss_pred cccccCCCcchHHhHHHHHhCCCCCcceecccchHHHHHHHHHHHHHHcC
Q psy11966 3 QFVLVAPSTPRAAKSNSPIFALAGPCCTIDTACSSTLFGLHLAVGAIERG 52 (99)
Q Consensus 3 ~~~~~~~~~~~~~~~ia~~~~l~Gp~~tv~~acaS~~~Ai~~A~~~i~~G 52 (99)
++.....+...+|.-+...-+++.-...+|.-|-||...|+.|......-
T Consensus 5 ~~~~~a~L~~~lA~~ll~la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~ 54 (179)
T PF01170_consen 5 PFFGPAPLRPTLAAALLNLAGWRPGDVVLDPFCGSGTILIEAALMGANIP 54 (179)
T ss_dssp TSSSSTSS-HHHHHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTTTS
T ss_pred CCCCCCCCCHHHHHHHHHHhCCCCCCEEeecCCCCCHHHHHHHHHhhCcc
Confidence 56677788888999888888888888999999999999998877555443
No 138
>COG1058 CinA Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]
Probab=49.24 E-value=32 Score=24.15 Aligned_cols=62 Identities=13% Similarity=-0.097 Sum_probs=50.2
Q ss_pred ccccCCCcchHHhHHHHHhCCCCCcceecccchHHHHHHHHHHHHHHcCCCCEEEEEecCCCC
Q psy11966 4 FVLVAPSTPRAAKSNSPIFALAGPCCTIDTACSSTLFGLHLAVGAIERGECDHAIIGGVNLTL 66 (99)
Q Consensus 4 ~~~~~~~~~~~~~~ia~~~~l~Gp~~tv~~acaS~~~Ai~~A~~~i~~G~~d~~l~gg~~~~~ 66 (99)
-.+.|-.-+.-+.+++..|.-.|-.+.--..+---...|..+.+..... +|++|+.|-=-+.
T Consensus 12 ElL~G~ivdtNa~~la~~L~~~G~~v~~~~~VgD~~~~I~~~l~~a~~r-~D~vI~tGGLGPT 73 (255)
T COG1058 12 ELLSGRIVDTNAAFLADELTELGVDLARITTVGDNPDRIVEALREASER-ADVVITTGGLGPT 73 (255)
T ss_pred ceecCceecchHHHHHHHHHhcCceEEEEEecCCCHHHHHHHHHHHHhC-CCEEEECCCcCCC
Confidence 3466777888999999999999987777777777888899999888887 9999987654433
No 139
>TIGR00651 pta phosphate acetyltransferase. Model contains a gene from E.coli coding for ethanolamine utilization protein (euti) and also contains similarity to malate oxidoreductases
Probab=48.91 E-value=35 Score=24.37 Aligned_cols=37 Identities=16% Similarity=0.125 Sum_probs=24.9
Q ss_pred HHHHHHHHHcCCCCEEEEEecCCCCCHHHHHHHHHccC
Q psy11966 42 LHLAVGAIERGECDHAIIGGVNLTLKPATSLMYHKYNM 79 (99)
Q Consensus 42 i~~A~~~i~~G~~d~~l~gg~~~~~~~~~~~~~~~~~~ 79 (99)
...|..+++.|++|.++.|++.. ........+...+.
T Consensus 89 ~~~a~~lv~~G~aD~lv~G~~~t-t~~~l~~~l~~i~~ 125 (303)
T TIGR00651 89 SYFATMMVALGEADGLVSGAVHT-TADTLRPALQIIKT 125 (303)
T ss_pred HHHHHHHHHCCCCCEEEeCCCCC-HHHHHHHHHHHhcc
Confidence 36799999999999999888765 22333233444443
No 140
>PRK07742 phosphate butyryltransferase; Validated
Probab=47.10 E-value=24 Score=25.06 Aligned_cols=25 Identities=36% Similarity=0.422 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHcCCCCEEEEEecC
Q psy11966 39 LFGLHLAVGAIERGECDHAIIGGVN 63 (99)
Q Consensus 39 ~~Ai~~A~~~i~~G~~d~~l~gg~~ 63 (99)
..++..|.++++.|++|.++.|+..
T Consensus 76 ~~s~~~a~~lV~~G~aD~lvsG~~t 100 (299)
T PRK07742 76 AEAAELAVKAVRNGEADVLMKGNVP 100 (299)
T ss_pred HHHHHHHHHHHHCCCCCEEEECCcC
Confidence 3477889999999999999988874
No 141
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=45.44 E-value=9.7 Score=17.16 Aligned_cols=11 Identities=36% Similarity=0.525 Sum_probs=7.7
Q ss_pred cccCCCCCcee
Q psy11966 87 SPFDASGVGHR 97 (99)
Q Consensus 87 ~pfd~~~~G~v 97 (99)
+-||++.+|++
T Consensus 7 ~~~D~d~dG~I 17 (31)
T PF13405_consen 7 KMFDKDGDGFI 17 (31)
T ss_dssp HHH-TTSSSEE
T ss_pred HHHCCCCCCcC
Confidence 45788999986
No 142
>COG0399 WecE Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=44.61 E-value=22 Score=26.26 Aligned_cols=43 Identities=26% Similarity=0.296 Sum_probs=31.0
Q ss_pred HHHHHhCCCCCcceecccchHHHHHHHHHHHHHHcCCCCEEEEEecCC
Q psy11966 17 SNSPIFALAGPCCTIDTACSSTLFGLHLAVGAIERGECDHAIIGGVNL 64 (99)
Q Consensus 17 ~ia~~~~l~Gp~~tv~~acaS~~~Ai~~A~~~i~~G~~d~~l~gg~~~ 64 (99)
.++.++|.+ . .-+|+|+..|++.|..++.-|+-|-+|+-....
T Consensus 42 ~~ae~~G~k---~--ava~~sgT~AL~laL~al~ig~GDeVI~ps~Tf 84 (374)
T COG0399 42 AFAEYLGVK---Y--AVAVSSGTAALHLALLALAIGPGDEVIVPSFTF 84 (374)
T ss_pred HHHHHhCCC---e--EEEecChHHHHHHHHHhcCCCCCCEEEecCCch
Confidence 455554432 2 346789999999999988899999888765543
No 143
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=41.31 E-value=48 Score=23.63 Aligned_cols=43 Identities=14% Similarity=0.207 Sum_probs=32.2
Q ss_pred cccccCCCcchHHhHHHHHhCCCCCcceecccchHHHHHHHHH
Q psy11966 3 QFVLVAPSTPRAAKSNSPIFALAGPCCTIDTACSSTLFGLHLA 45 (99)
Q Consensus 3 ~~~~~~~~~~~~~~~ia~~~~l~Gp~~tv~~acaS~~~Ai~~A 45 (99)
++..++.+...++..+....+++.....++.+|.+|...+..+
T Consensus 159 ~~~~~~~l~~~la~~~~~l~~~~~g~~vLDp~cGtG~~lieaa 201 (329)
T TIGR01177 159 PFFKPGSMDPKLARAMVNLARVTEGDRVLDPFCGTGGFLIEAG 201 (329)
T ss_pred CccCCCCCCHHHHHHHHHHhCCCCcCEEEECCCCCCHHHHHHH
Confidence 4555566666677777777777766789999999999887644
No 144
>PRK05805 phosphate butyryltransferase; Validated
Probab=40.98 E-value=34 Score=24.38 Aligned_cols=24 Identities=25% Similarity=0.264 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHcCCCCEEEEEecC
Q psy11966 40 FGLHLAVGAIERGECDHAIIGGVN 63 (99)
Q Consensus 40 ~Ai~~A~~~i~~G~~d~~l~gg~~ 63 (99)
.++..|+++++.|++|.++.|.+.
T Consensus 78 ~a~~~A~~lVk~GeADa~v~G~~~ 101 (301)
T PRK05805 78 KAALKAVELVSSGKADMVMKGLVD 101 (301)
T ss_pred HHHHHHHHHHHCCCCCEEecCccC
Confidence 577899999999999999987775
No 145
>TIGR03289 frhB coenzyme F420 hydrogenase, subunit beta. This model represents that clade of F420-dependent hydrogenases (FRH) beta subunits found exclusively and universally in methanogenic archaea. The N- and C-terminal domains of this protein are modelled by pfam04422 and pfam04423 respectively.
Probab=40.03 E-value=55 Score=23.01 Aligned_cols=31 Identities=19% Similarity=0.118 Sum_probs=26.6
Q ss_pred cccchHHHHHHHHHHHHHHcCCCCEEEEEec
Q psy11966 32 DTACSSTLFGLHLAVGAIERGECDHAIIGGV 62 (99)
Q Consensus 32 ~~acaS~~~Ai~~A~~~i~~G~~d~~l~gg~ 62 (99)
-..++||...-..+..+|++|.+|-+|++..
T Consensus 18 r~~sssGG~~tall~~lLe~g~IDgvv~~~~ 48 (275)
T TIGR03289 18 LKKAQDGGIVSAILIYALEENIIDGAIVAGP 48 (275)
T ss_pred cccCCcHHHHHHHHHHHHHcCCccEEEEEec
Confidence 3467888888999999999999999999963
No 146
>KOG1393|consensus
Probab=39.35 E-value=31 Score=25.96 Aligned_cols=32 Identities=28% Similarity=0.320 Sum_probs=24.2
Q ss_pred ceecccchHHHHHHHHHHHHHHc----CCCCEEEEE
Q psy11966 29 CTIDTACSSTLFGLHLAVGAIER----GECDHAIIG 60 (99)
Q Consensus 29 ~tv~~acaS~~~Ai~~A~~~i~~----G~~d~~l~g 60 (99)
+-.-+||=+|..|+-.|++||++ |+.-++++|
T Consensus 118 iDttnACYGGtaALfnavnWiESssWDGr~aivV~g 153 (462)
T KOG1393|consen 118 IDTTNACYGGTAALFNAVNWIESSSWDGRYAIVVCG 153 (462)
T ss_pred ccccccccccHHHHHHHhhhhhhcccCCceeEEEEe
Confidence 33457999999999999999976 444455444
No 147
>PF01515 PTA_PTB: Phosphate acetyl/butaryl transferase; InterPro: IPR002505 This entry contains both phosphate acetyltransferase 2.3.1.8 from EC: Acetyl-CoA + phosphate = CoA + acetyl phosphate and phosphate butaryltransferase 2.3.1.19 from EC: Butanoyl-CoA + phosphate = CoA + butanoyl phosphate These enzymes catalyse the transfer of an acetyl or butaryl group to orthophosphate.; GO: 0016746 transferase activity, transferring acyl groups, 0008152 metabolic process; PDB: 2AF3_D 1QZT_D 2AF4_D 1VMI_A 3UF6_B 3U9E_A 3TNG_A 4E4R_A 1R5J_A 1YCO_A ....
Probab=38.70 E-value=46 Score=23.98 Aligned_cols=25 Identities=16% Similarity=0.122 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHcCCCCEEEEEecCC
Q psy11966 40 FGLHLAVGAIERGECDHAIIGGVNL 64 (99)
Q Consensus 40 ~Ai~~A~~~i~~G~~d~~l~gg~~~ 64 (99)
.....|..+++.|++|.++.|.+..
T Consensus 103 ~~~~~a~~mv~~G~aD~lv~G~~~t 127 (319)
T PF01515_consen 103 DPNYFAAMMVRLGDADALVKGLIHT 127 (319)
T ss_dssp SHHHHHHHHHHTTSSSEEEE-SSSH
T ss_pred HHHHHHHHHHHcCCCCEEecCCCCC
Confidence 6788999999999999999998854
No 148
>PRK09653 eutD phosphotransacetylase; Reviewed
Probab=36.98 E-value=70 Score=22.98 Aligned_cols=38 Identities=8% Similarity=0.058 Sum_probs=23.7
Q ss_pred HHHHHHHHHcCCCCEEEEEecCCCCCHHHHHHHHHccCC
Q psy11966 42 LHLAVGAIERGECDHAIIGGVNLTLKPATSLMYHKYNML 80 (99)
Q Consensus 42 i~~A~~~i~~G~~d~~l~gg~~~~~~~~~~~~~~~~~~l 80 (99)
+..|+.+++.|++|.++.|.... ........+...+.+
T Consensus 105 ~~~A~~lV~~G~aD~lvsG~~g~-T~~~l~~~l~~ig~~ 142 (324)
T PRK09653 105 NYFGTMLVKLGKADGMVSGAIHS-TADTLRPALQIIKTK 142 (324)
T ss_pred hHHHHHHHHcCCCCEEEeCCCCC-hHHHHHHHHHHhccC
Confidence 44899999999999999763332 223333334444443
No 149
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=36.42 E-value=18 Score=15.69 Aligned_cols=11 Identities=36% Similarity=0.646 Sum_probs=8.1
Q ss_pred cccCCCCCcee
Q psy11966 87 SPFDASGVGHR 97 (99)
Q Consensus 87 ~pfd~~~~G~v 97 (99)
+-+|.+.||.+
T Consensus 6 ~~~D~d~DG~i 16 (25)
T PF13202_consen 6 QQFDTDGDGKI 16 (25)
T ss_dssp HHHTTTSSSEE
T ss_pred HHHcCCCCCcC
Confidence 34688888876
No 150
>PRK00945 acetyl-CoA decarbonylase/synthase complex subunit epsilon; Provisional
Probab=34.10 E-value=57 Score=21.44 Aligned_cols=22 Identities=23% Similarity=0.196 Sum_probs=17.2
Q ss_pred CCCCEEEEEecCCCCCHHHHHH
Q psy11966 52 GECDHAIIGGVNLTLKPATSLM 73 (99)
Q Consensus 52 G~~d~~l~gg~~~~~~~~~~~~ 73 (99)
|++|++|..|++.......+..
T Consensus 107 ~~~DlvlfvG~~~~~~~~~l~~ 128 (171)
T PRK00945 107 GNYDLVIFIGVTYYYASQGLSA 128 (171)
T ss_pred CCcCEEEEecCCchhHHHHHHH
Confidence 7999999999998665555443
No 151
>TIGR02709 branched_ptb branched-chain phosphotransacylase. This model distinguishes branched-chain phosphotransacylases like that of Enterococcus faecalis from closely related subfamilies of phosphate butyryltransferase (EC 2.3.1.19) (TIGR02706) and phosphate acetyltransferase (EC 2.3.1.8) (TIGR00651). Members of this family and of TIGR02706 show considerable crossreactivity, and the occurrence of a member of either family near an apparent leucine dehydrogenase will suggest activity on branched chain-acyl-CoA compounds.
Probab=33.52 E-value=62 Score=22.94 Aligned_cols=30 Identities=20% Similarity=0.268 Sum_probs=25.8
Q ss_pred chHHHHHHHHHHHHHHcCCCCEEEEEecCC
Q psy11966 35 CSSTLFGLHLAVGAIERGECDHAIIGGVNL 64 (99)
Q Consensus 35 caS~~~Ai~~A~~~i~~G~~d~~l~gg~~~ 64 (99)
|.....|...|+.+++.|++|.++-|-.+.
T Consensus 50 ~~~~~~aa~~av~lv~~G~aD~lmkG~i~T 79 (271)
T TIGR02709 50 CSDEAAVAQEAVSLVATGQAQILLKGIIQT 79 (271)
T ss_pred CCChHHHHHHHHHHHHCCCCCEEEcCCcCc
Confidence 356678899999999999999999998865
No 152
>PRK09325 coenzyme F420-reducing hydrogenase subunit beta; Validated
Probab=32.96 E-value=79 Score=22.21 Aligned_cols=31 Identities=26% Similarity=0.244 Sum_probs=26.0
Q ss_pred ecccchHHHHHHHHHHHHHHcCCCCEEEEEe
Q psy11966 31 IDTACSSTLFGLHLAVGAIERGECDHAIIGG 61 (99)
Q Consensus 31 v~~acaS~~~Ai~~A~~~i~~G~~d~~l~gg 61 (99)
+-..++||...-..+..+|++|.+|-+|++.
T Consensus 19 ir~~sssGG~~tall~~lLe~g~VDgvv~~~ 49 (282)
T PRK09325 19 ILKKAQDGGIVTALLIYALEEGIIDGVIVAG 49 (282)
T ss_pred ccccCCcHHHHHHHHHHHHHcCCccEEEEec
Confidence 3446788888888889999999999999984
No 153
>TIGR00182 plsX fatty acid/phospholipid synthesis protein PlsX. This protein of fatty acid/phospholipid biosynthesis, called PlsX after the member in Streptococcus pneumoniae, is proposed to be a phosphate acyltransferase that partners with PlsY (TIGR00023) in a two-step 1-acylglycerol-3-phosphate biosynthesis pathway alternative to the one-step PlsB (EC 2.3.1.15) pathway.
Probab=32.81 E-value=53 Score=23.73 Aligned_cols=20 Identities=30% Similarity=0.612 Sum_probs=18.6
Q ss_pred HHHHHHHHHcCCCCEEEEEe
Q psy11966 42 LHLAVGAIERGECDHAIIGG 61 (99)
Q Consensus 42 i~~A~~~i~~G~~d~~l~gg 61 (99)
+..|+++++.|++|.++.+|
T Consensus 72 ~~~A~~lVk~G~ADa~VSgg 91 (322)
T TIGR00182 72 MQLAMNLVKEGRADAVISAG 91 (322)
T ss_pred HHHHHHHHHCCCCCEEEeCC
Confidence 78899999999999999886
No 154
>PF01041 DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransferase family; InterPro: IPR000653 This entry represents a family that are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions. The family includes StsA P72454 from SWISSPROT, StsC P77952 from SWISSPROT and StsS []. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase 2.6.1.50 from EC, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin [].; PDB: 2FNI_A 2FNU_A 2FN6_A 2PO3_A 3UWC_A 1O61_B 1O62_B 1O69_B 1B9I_A 1B9H_A ....
Probab=32.69 E-value=41 Score=24.15 Aligned_cols=46 Identities=28% Similarity=0.320 Sum_probs=33.9
Q ss_pred HHhHHHHHhCCCCCcceecccchHHHHHHHHHHHHHHcCCCCEEEEEecCC
Q psy11966 14 AAKSNSPIFALAGPCCTIDTACSSTLFGLHLAVGAIERGECDHAIIGGVNL 64 (99)
Q Consensus 14 ~~~~ia~~~~l~Gp~~tv~~acaS~~~Ai~~A~~~i~~G~~d~~l~gg~~~ 64 (99)
.-..++.+||.+ -.-+|+||..||..|..++.-++-|-+|+-....
T Consensus 30 fE~~~a~~~g~~-----~~~~~~sgt~Al~~al~~l~~~~gdeVi~p~~t~ 75 (363)
T PF01041_consen 30 FEKEFAEYFGVK-----YAVAVSSGTSALHLALRALGLGPGDEVIVPAYTF 75 (363)
T ss_dssp HHHHHHHHHTSS-----EEEEESSHHHHHHHHHHHTTGGTTSEEEEESSS-
T ss_pred HHHHHHHHhCCC-----eEEEeCChhHHHHHHHHhcCCCcCceEecCCCcc
Confidence 344677777632 2335688899999999999988889998876654
No 155
>KOG0030|consensus
Probab=29.26 E-value=19 Score=23.22 Aligned_cols=15 Identities=27% Similarity=0.377 Sum_probs=12.9
Q ss_pred CCcccCCCCCceeCC
Q psy11966 85 TISPFDASGVGHRQP 99 (99)
Q Consensus 85 ~~~pfd~~~~G~v~g 99 (99)
.-|-||++.+|++++
T Consensus 93 gLrvFDkeg~G~i~~ 107 (152)
T KOG0030|consen 93 GLRVFDKEGNGTIMG 107 (152)
T ss_pred HHHhhcccCCcceeH
Confidence 468999999999874
No 156
>PRK05331 putative phosphate acyltransferase; Provisional
Probab=28.12 E-value=65 Score=23.38 Aligned_cols=23 Identities=26% Similarity=0.473 Sum_probs=20.1
Q ss_pred HHHHH--------HHHHHHHcCCCCEEEEEe
Q psy11966 39 LFGLH--------LAVGAIERGECDHAIIGG 61 (99)
Q Consensus 39 ~~Ai~--------~A~~~i~~G~~d~~l~gg 61 (99)
..|++ .|.++++.|++|.++.+|
T Consensus 73 ~~alR~kk~ssm~~A~~lV~~G~AD~~vSgg 103 (334)
T PRK05331 73 SQALRRKKDSSMRVALELVKEGEADACVSAG 103 (334)
T ss_pred HHHHHhcCCChHHHHHHHHhCCCCCEEEeCC
Confidence 56666 799999999999999886
No 157
>cd07041 STAS_RsbR_RsbS_like Sulphate Transporter and Anti-Sigma factor antagonist domain of the "stressosome" complex proteins RsbS and RsbR, regulators of the bacterial stress activated alternative sigma factor sigma-B by phosphorylation. The STAS (Sulphate Transporter and Anti-Sigma factor antagonist) domain of proteins related to RsbS and RsbR which are part of the "stressosome" complex that plays an important role in the regulation of the bacterial stress activated alternative sigma factor sigma-B. During stress conditions RsbS and RsbR are phosphorylated which leads to the release of RsbT, an activator of of the RsbU phosphatase, which in turn activates RsbV which leads to the release and activation of sigma factor B. RsbS is a single domain protein (STAS domain), while RsbR-like proteins have a well-conserved C-terminal STATS domain and a variable N-terminal domain. The STAS domain is also found in the C- terminal region of sulphate transporters and anti-anti-sigma factors.
Probab=27.78 E-value=1.3e+02 Score=17.30 Aligned_cols=41 Identities=12% Similarity=0.096 Sum_probs=31.1
Q ss_pred cchHHHHHHHHHHHHHHcCCCCEEEEEecCCCCCHHHHHHHHHccC
Q psy11966 34 ACSSTLFGLHLAVGAIERGECDHAIIGGVNLTLKPATSLMYHKYNM 79 (99)
Q Consensus 34 acaS~~~Ai~~A~~~i~~G~~d~~l~gg~~~~~~~~~~~~~~~~~~ 79 (99)
=.+||+.++....+.++....++.++| .++.....+...|.
T Consensus 54 iDssg~~~l~~~~~~~~~~g~~l~l~g-----~~~~v~~~l~~~gl 94 (109)
T cd07041 54 IDSAVARHLLRLARALRLLGARTILTG-----IRPEVAQTLVELGI 94 (109)
T ss_pred hcHHHHHHHHHHHHHHHHcCCeEEEEe-----CCHHHHHHHHHhCC
Confidence 357899999999999998889999887 44555555555554
No 158
>PF00497 SBP_bac_3: Bacterial extracellular solute-binding proteins, family 3; InterPro: IPR001638 Bacterial high affinity transport systems are involved in active transport of solutes across the cytoplasmic membrane. The protein components of these traffic systems include one or two transmembrane protein components, one or two membrane-associated ATP-binding proteins (ABC transporters; see IPR003439 from INTERPRO) and a high affinity periplasmic solute-binding protein. The latter are thought to bind the substrate in the vicinity of the inner membrane, and to transfer it to a complex of inner membrane proteins for concentration into the cytoplasm. In Gram-positive bacteria which are surrounded by a single membrane and have therefore no periplasmic region, the equivalent proteins are bound to the membrane via an N-terminal lipid anchor. These homologue proteins do not play an integral role in the transport process per se, but probably serve as receptors to trigger or initiate translocation of the solute throught the membrane by binding to external sites of the integral membrane proteins of the efflux system. In addition, at least some solute-binding proteins function in the initiation of sensory transduction pathways. On the basis of sequence similarities, the vast majority of these solute-binding proteins can be grouped [] into eight families or clusters, which generally correlate with the nature of the solute bound. Family 3 groups together specific amino acids and opine-binding periplasmic proteins and a periplasmic homologue with catalytic activity.; GO: 0005215 transporter activity, 0006810 transport, 0030288 outer membrane-bounded periplasmic space; PDB: 3N26_A 3QAX_A 3I6V_A 2VHA_B 2IA4_B 2Q89_A 2Q88_A 2YJP_C 1II5_A 1IIW_A ....
Probab=26.70 E-value=91 Score=19.66 Aligned_cols=19 Identities=26% Similarity=0.275 Sum_probs=15.3
Q ss_pred HHHHHHHHHcCCCCEEEEE
Q psy11966 42 LHLAVGAIERGECDHAIIG 60 (99)
Q Consensus 42 i~~A~~~i~~G~~d~~l~g 60 (99)
...+.++|++|++|.+++-
T Consensus 141 ~~~~~~~l~~g~~d~~i~~ 159 (225)
T PF00497_consen 141 PEEALEALLSGRIDAFIVD 159 (225)
T ss_dssp HHHHHHHHHTTSSSEEEEE
T ss_pred HHHHHHHHhcCCeeeeecc
Confidence 4556788999999998863
No 159
>TIGR00315 cdhB CO dehydrogenase/acetyl-CoA synthase complex, epsilon subunit. Nomenclature follows the description for Methanosarcina thermophila. The complex is also found in Archaeoglobus fulgidus, not considered a methanogen, but is otherwise generally associated with methanogenesis.
Probab=26.51 E-value=1.2e+02 Score=19.74 Aligned_cols=22 Identities=14% Similarity=0.096 Sum_probs=17.0
Q ss_pred CCCCEEEEEecCCCCCHHHHHH
Q psy11966 52 GECDHAIIGGVNLTLKPATSLM 73 (99)
Q Consensus 52 G~~d~~l~gg~~~~~~~~~~~~ 73 (99)
|++|++|..|++.......+..
T Consensus 99 g~~DlvlfvG~~~y~~~~~ls~ 120 (162)
T TIGR00315 99 GNYDLVLFLGIIYYYLSQMLSS 120 (162)
T ss_pred CCcCEEEEeCCcchHHHHHHHH
Confidence 8999999999998555544433
No 160
>cd06844 STAS Sulphate Transporter and Anti-Sigma factor antagonist domain found in the C-terminal region of sulphate transporters as well as in bacterial and archaeal proteins involved in the regulation of sigma factors. The STAS (Sulphate Transporter and Anti-Sigma factor antagonist) domain is found in the C-terminal region of sulphate transporters as well as in bacterial and archaeal proteins involved in the regulation of sigma factors, like anti-anti-sigma factors and "stressosome" components. The sigma factor regulators are involved in protein-protein interaction which is regulated by phosphorylation.
Probab=26.34 E-value=1.2e+02 Score=17.21 Aligned_cols=41 Identities=17% Similarity=0.008 Sum_probs=30.2
Q ss_pred cchHHHHHHHHHHHHHHcCCCCEEEEEecCCCCCHHHHHHHHHccC
Q psy11966 34 ACSSTLFGLHLAVGAIERGECDHAIIGGVNLTLKPATSLMYHKYNM 79 (99)
Q Consensus 34 acaS~~~Ai~~A~~~i~~G~~d~~l~gg~~~~~~~~~~~~~~~~~~ 79 (99)
=.+||+.++....+.++.-..++.+++- ++.....+...|.
T Consensus 52 iDssgl~~L~~l~~~~~~~g~~l~l~~~-----~~~v~~~l~~~gl 92 (100)
T cd06844 52 MDSSGTGVLLERSRLAEAVGGQFVLTGI-----SPAVRITLTESGL 92 (100)
T ss_pred EcHHHHHHHHHHHHHHHHcCCEEEEECC-----CHHHHHHHHHhCc
Confidence 3588999999999999998899988763 4444444555443
No 161
>PRK09326 F420H2 dehydrogenase subunit F; Provisional
Probab=26.28 E-value=1e+02 Score=22.27 Aligned_cols=32 Identities=16% Similarity=0.017 Sum_probs=26.1
Q ss_pred cchHHHHHHHHHHHHHHcCCCCEEEEEecCCC
Q psy11966 34 ACSSTLFGLHLAVGAIERGECDHAIIGGVNLT 65 (99)
Q Consensus 34 acaS~~~Ai~~A~~~i~~G~~d~~l~gg~~~~ 65 (99)
..+||...-.++..+|++|.+|.|+....+..
T Consensus 90 ~s~sGG~~t~l~~~~L~~g~Vd~V~~~~~~~~ 121 (341)
T PRK09326 90 GGQDGGVTSAILKSLLKQGEIDCAVGITRNEK 121 (341)
T ss_pred ccccccHHHHHHHHHHHcCCccEEEEeccCCC
Confidence 46777888889999999999999987765543
No 162
>PF00975 Thioesterase: Thioesterase domain; InterPro: IPR001031 Thioesterase domains often occur integrated in or associated with peptide synthetases which are involved in the non-ribosomal synthesis of peptide antibiotics []. Thioesterases are required for the addition of the last amino acid to the peptide antibiotic, thereby forming a cyclic antibiotic. Next to the operons encoding these enzymes, in almost all cases, are genes that encode proteins that have similarity to the type II fatty acid thioesterases of vertebrates.; GO: 0016788 hydrolase activity, acting on ester bonds, 0009058 biosynthetic process; PDB: 2RON_A 2K2Q_B 3LCR_B 2HFJ_B 1MNQ_A 1MN6_B 1MNA_B 2HFK_B 2H7Y_B 2H7X_A ....
Probab=26.21 E-value=1.2e+02 Score=19.59 Aligned_cols=34 Identities=15% Similarity=0.123 Sum_probs=27.6
Q ss_pred cceecccchHHHHHHHHHHHHHHcCC-CCEEEEEe
Q psy11966 28 CCTIDTACSSTLFGLHLAVGAIERGE-CDHAIIGG 61 (99)
Q Consensus 28 ~~tv~~acaS~~~Ai~~A~~~i~~G~-~d~~l~gg 61 (99)
.+.+-.-|.+|..|...|.++.+.|+ +..++.-.
T Consensus 67 p~~L~G~S~Gg~lA~E~A~~Le~~G~~v~~l~liD 101 (229)
T PF00975_consen 67 PYVLAGWSFGGILAFEMARQLEEAGEEVSRLILID 101 (229)
T ss_dssp SEEEEEETHHHHHHHHHHHHHHHTT-SESEEEEES
T ss_pred CeeehccCccHHHHHHHHHHHHHhhhccCceEEec
Confidence 68888999999999999999999988 55555444
No 163
>cd01410 SIRT7 SIRT7: Eukaryotic and prokaryotic group (class4) which includes human sirtuin SIRT6, SIRT7, and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.
Probab=26.13 E-value=1.3e+02 Score=20.10 Aligned_cols=31 Identities=26% Similarity=0.225 Sum_probs=24.3
Q ss_pred HHHHHHHHHHcCCCCEEEEEecCCCCCHHHHHH
Q psy11966 41 GLHLAVGAIERGECDHAIIGGVNLTLKPATSLM 73 (99)
Q Consensus 41 Ai~~A~~~i~~G~~d~~l~gg~~~~~~~~~~~~ 73 (99)
.+..+.+.++ ++|+.|+.|++....|...+.
T Consensus 145 ~~~~a~~~~~--~aDlllviGTSl~V~pa~~l~ 175 (206)
T cd01410 145 NWMGAAAAAC--RADLFLCLGTSLQVTPAANLP 175 (206)
T ss_pred HHHHHHHHHh--cCCEEEEECcCceehhHHHHH
Confidence 5677777776 599999999998777766554
No 164
>TIGR02981 phageshock_pspE phage shock operon rhodanese PspE. Members of this very narrowly defined protein family are proteins active as rhodanese (EC 2.8.1.1) and found in the extended variants of the phage shock protein (psp operon) in Escherichia coli and a few closely related species. Note that the designation phage shock protein PspE has been applied, incorrectly, in many instances where the genome lacks the phage shock regulon entirely.
Probab=25.97 E-value=45 Score=19.59 Aligned_cols=31 Identities=13% Similarity=0.069 Sum_probs=21.9
Q ss_pred cchHHHHHHHHHHHHHHcCCCCEEEEEecCC
Q psy11966 34 ACSSTLFGLHLAVGAIERGECDHAIIGGVNL 64 (99)
Q Consensus 34 acaS~~~Ai~~A~~~i~~G~~d~~l~gg~~~ 64 (99)
-|.+|..+-..+....+.|..++.+.||.+.
T Consensus 64 yC~~G~rS~~aa~~L~~~G~~~v~~~GG~~~ 94 (101)
T TIGR02981 64 YCNAGRQSGMAKDILLDMGYTHAENAGGIKD 94 (101)
T ss_pred EeCCCHHHHHHHHHHHHcCCCeEEecCCHHH
Confidence 3677766666666666788777777787765
No 165
>PF02146 SIR2: Sir2 family; InterPro: IPR003000 These sequences represent the Sirtuin (Sir2-related) family of NAD+-dependent deacetylases. This family of enzymes is broadly conserved from bacteria to humans. In yeast, Sir2 proteins form complexes with other proteins to silence chromatin by accessing histones and deacetylating them. Sir2 proteins have been proposed to play a role in silencing, chromosome stability and ageing []. The bacterial enzyme CobB, an homologue of Sir2, is a phosphoribosyltransferase []. An in vitro ADP ribosyltransferase activity has also been associated with human members of this family []. Sir2-like enzymes employ NAD+ as a cosubstrate in deacetylation reactions [] and catalyse a reaction in which the cleavage of NAD(+)and histone and/or protein deacetylation are coupled to the formation of O-acetyl-ADP-ribose, a novel metabolite. The dependence of the reaction on both NAD(+) and the generation of this potential second messenger offers new clues to understanding the function and regulation of nuclear, cytoplasmic and mitochondrial Sir2-like enzymes []. Silent Information Regulator protein of Saccharomyces cerevisiae (Sir2) is one of several factors critical for silencing at least three loci. Among them, it is unique because it silences the rDNA as well as the mating type loci and telomeres []. Sir2 interacts in a complex with itself and with Sir3 and Sir4, two proteins that are able to interact with nucleosomes. In addition Sir2 also interacts with ubiquitination factors and/or complexes []. Homologues of Sir2 share a core domain including the GAG and NID motifs and a putative C4 Zinc finger. The regions containing these three conserved motifs are individually essential for Sir2 silencing function, as are the four cysteins []. In addition, the conserved residues HG next to the putative Zn finger have been shown to be essential for the ADP ribosyltransferase activity []. ; GO: 0008270 zinc ion binding, 0070403 NAD+ binding, 0006476 protein deacetylation; PDB: 1S5P_A 3PKI_E 3PKJ_F 3K35_A 1ICI_A 1M2K_A 1M2G_A 1M2N_B 1M2H_A 1M2J_A ....
Probab=25.90 E-value=97 Score=19.90 Aligned_cols=25 Identities=24% Similarity=0.312 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHcCCCCEEEEEecCCCC
Q psy11966 40 FGLHLAVGAIERGECDHAIIGGVNLTL 66 (99)
Q Consensus 40 ~Ai~~A~~~i~~G~~d~~l~gg~~~~~ 66 (99)
..+..+.+.++ ++|++|+.|+..-.
T Consensus 152 ~~~~~~~~~~~--~~Dl~lviGTSl~V 176 (178)
T PF02146_consen 152 EEIEEAIEDAE--EADLLLVIGTSLQV 176 (178)
T ss_dssp HHHHHHHHHHH--H-SEEEEESS-STS
T ss_pred HHHHHHHHHHH--cCCEEEEEccCcEE
Confidence 45777777555 69999999998644
No 166
>PRK10287 thiosulfate:cyanide sulfurtransferase; Provisional
Probab=25.63 E-value=55 Score=19.38 Aligned_cols=32 Identities=16% Similarity=0.038 Sum_probs=22.2
Q ss_pred ccchHHHHHHHHHHHHHHcCCCCEEEEEecCC
Q psy11966 33 TACSSTLFGLHLAVGAIERGECDHAIIGGVNL 64 (99)
Q Consensus 33 ~acaS~~~Ai~~A~~~i~~G~~d~~l~gg~~~ 64 (99)
-=|.++..+-..+....+.|-.++.+.||.+.
T Consensus 65 lyC~~G~rS~~aa~~L~~~G~~~v~~~GG~~~ 96 (104)
T PRK10287 65 LYCNAGRQSGQAKEILSEMGYTHAENAGGLKD 96 (104)
T ss_pred EEeCCChHHHHHHHHHHHcCCCeEEecCCHHH
Confidence 33666666666666666788777777787765
No 167
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=24.64 E-value=1.8e+02 Score=21.23 Aligned_cols=55 Identities=18% Similarity=0.181 Sum_probs=32.4
Q ss_pred HHHHHHHHHcCCCCEEEEEecCCCCCHHHHHHHHHccCCCCCCCCcccCCCCCcee
Q psy11966 42 LHLAVGAIERGECDHAIIGGVNLTLKPATSLMYHKYNMLSPTGTISPFDASGVGHR 97 (99)
Q Consensus 42 i~~A~~~i~~G~~d~~l~gg~~~~~~~~~~~~~~~~~~ls~~~~~~pfd~~~~G~v 97 (99)
...|-+.|+.|.+|++-.|-.-. .+|....-...-..+.+...+.-+..++.||.
T Consensus 303 ~~~ae~~i~~G~~D~V~~gR~~i-adPd~~~k~~~g~~~~~~~~~~~~~~~~~~~~ 357 (362)
T PRK10605 303 AEKAETLIGKGLIDAVAFGRDYI-ANPDLVARLQRKAELNPQRPESFYGGGAEGYT 357 (362)
T ss_pred HHHHHHHHHcCCCCEEEECHHhh-hCccHHHHHhcCCCCCCCChhhhcCCCCCCCc
Confidence 67788899999999977666554 55554433333333333334444444455654
No 168
>PRK11890 phosphate acetyltransferase; Provisional
Probab=24.59 E-value=2.4e+02 Score=20.42 Aligned_cols=47 Identities=17% Similarity=0.144 Sum_probs=30.3
Q ss_pred HHHHHhCCCCCcceecccchHHHHHHHHHHHHHHcCCCCEEEEEecCC
Q psy11966 17 SNSPIFALAGPCCTIDTACSSTLFGLHLAVGAIERGECDHAIIGGVNL 64 (99)
Q Consensus 17 ~ia~~~~l~Gp~~tv~~acaS~~~Ai~~A~~~i~~G~~d~~l~gg~~~ 64 (99)
+++..+|+.=-.+.|-.. .....+...|+.+++.|+.|..+.|-++.
T Consensus 61 ~~a~~~g~dl~~~eII~~-~~~~~~a~~av~mV~~G~AD~lmkG~i~T 107 (312)
T PRK11890 61 AVAAECGLDLSGYEIVDA-PHSHAAAAKAVELVREGEAEALMKGSLHT 107 (312)
T ss_pred HHHHHcCCCcCCCEEECC-CChHHHHHHHHHHHHcCCCCEEecCCccc
Confidence 344555554222333332 22344678899999999999999888865
No 169
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=24.59 E-value=1.1e+02 Score=20.57 Aligned_cols=24 Identities=13% Similarity=0.133 Sum_probs=20.4
Q ss_pred hHHHHHHHHHHHHHHcCCCCEEEE
Q psy11966 36 SSTLFGLHLAVGAIERGECDHAII 59 (99)
Q Consensus 36 aS~~~Ai~~A~~~i~~G~~d~~l~ 59 (99)
...-.++..|...|.+|++|++|-
T Consensus 98 ~~~~~~~~~a~~~l~~~~ydlvVL 121 (191)
T PRK05986 98 AAAREGWEEAKRMLADESYDLVVL 121 (191)
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEE
Confidence 556678999999999999999883
No 170
>PF04166 PdxA: Pyridoxal phosphate biosynthetic protein PdxA; InterPro: IPR005255 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. In Escherichia coli, the pdx genes involved in vitamin B6 have been characterised [, , ]. This entry represents 4-hydroxythreonine-4-phosphate dehydrogenase (PdxA, 1.1.1.262 from EC). PdxA takes part in vitamin B6 biosynthesis, forming pyridoxine 5'-phosphate from 4-(phosphohydroxy)-L-threonine and 1-deoxy-D-xylulose-5-phosphate.; GO: 0050570 4-hydroxythreonine-4-phosphate dehydrogenase activity, 0051287 NAD binding, 0008615 pyridoxine biosynthetic process, 0055114 oxidation-reduction process; PDB: 1YXO_A 1PS6_A 1PS7_C 1PTM_B 1R8K_B 2HI1_A 3LXY_A 3TSN_B.
Probab=24.30 E-value=1.5e+02 Score=21.35 Aligned_cols=29 Identities=24% Similarity=0.276 Sum_probs=21.9
Q ss_pred hHHHHHHHHHHHHHHcCCCCEEEEEecCC
Q psy11966 36 SSTLFGLHLAVGAIERGECDHAIIGGVNL 64 (99)
Q Consensus 36 aS~~~Ai~~A~~~i~~G~~d~~l~gg~~~ 64 (99)
-.+..+|..|++..+.|+.|.++.+..+.
T Consensus 71 ~aa~~~l~~A~~~~~~g~~dalVTaPinK 99 (298)
T PF04166_consen 71 RAAFESLEKAVELAKAGEIDALVTAPINK 99 (298)
T ss_dssp HHHHHHHHHHHHHHHTTSSSEEEE----H
T ss_pred HHHHHHHHHHHHHHHcCCCcEEEECCcCH
Confidence 45677899999999999999999876654
No 171
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=24.20 E-value=1.1e+02 Score=20.09 Aligned_cols=24 Identities=13% Similarity=0.076 Sum_probs=20.2
Q ss_pred hHHHHHHHHHHHHHHcCCCCEEEE
Q psy11966 36 SSTLFGLHLAVGAIERGECDHAII 59 (99)
Q Consensus 36 aS~~~Ai~~A~~~i~~G~~d~~l~ 59 (99)
.....++..|...|.+|++|++|.
T Consensus 80 ~~~~~~~~~a~~~l~~~~~DlvVL 103 (173)
T TIGR00708 80 AIAKAAWQHAKEMLADPELDLVLL 103 (173)
T ss_pred HHHHHHHHHHHHHHhcCCCCEEEe
Confidence 346678999999999999999883
No 172
>COG0416 PlsX Fatty acid/phospholipid biosynthesis enzyme [Lipid metabolism]
Probab=23.46 E-value=2e+02 Score=21.14 Aligned_cols=38 Identities=16% Similarity=0.330 Sum_probs=27.5
Q ss_pred HHHHHHHHHHcCCCCEEEEEecCCCCCHHHHHHHHHccCCC
Q psy11966 41 GLHLAVGAIERGECDHAIIGGVNLTLKPATSLMYHKYNMLS 81 (99)
Q Consensus 41 Ai~~A~~~i~~G~~d~~l~gg~~~~~~~~~~~~~~~~~~ls 81 (99)
.+..|.++++.|+.|.+|-.|-. ...+..+...++.+.
T Consensus 84 SM~~Ai~lVkeg~ADa~VSAGnT---GAlma~a~~~lg~i~ 121 (338)
T COG0416 84 SMRVALDLVKEGKADACVSAGNT---GALMALALLKLGRIK 121 (338)
T ss_pred HHHHHHHHHhcCcCCEEEecCch---HHHHHHHHHHhccCC
Confidence 57889999999999999987753 344445555555553
No 173
>PRK13846 putative glycerol-3-phosphate acyltransferase PlsX; Provisional
Probab=23.19 E-value=1e+02 Score=22.37 Aligned_cols=37 Identities=19% Similarity=0.251 Sum_probs=25.6
Q ss_pred HHHHHHHHHHcCCCCEEEEEecCCCCCHHHHHHHHHccCC
Q psy11966 41 GLHLAVGAIERGECDHAIIGGVNLTLKPATSLMYHKYNML 80 (99)
Q Consensus 41 Ai~~A~~~i~~G~~d~~l~gg~~~~~~~~~~~~~~~~~~l 80 (99)
.+..|+++++.|++|.++-.|-. ...+..+...++.+
T Consensus 85 Sm~~a~~lvk~g~ada~VSaGnT---GAl~a~a~~~lgri 121 (316)
T PRK13846 85 SMALGLDYLQEDKLDAFISTGNT---AALVTLARAKIPMF 121 (316)
T ss_pred HHHHHHHHHHcCCCCEEEecChH---HHHHHHHHHHhccC
Confidence 57789999999999999977753 23333444445544
No 174
>cd01409 SIRT4 SIRT4: Eukaryotic and prokaryotic group (class2) which includes human sirtuin SIRT4 and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.
Probab=23.02 E-value=2e+02 Score=19.93 Aligned_cols=31 Identities=13% Similarity=0.149 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHcCCCCEEEEEecCCCCCHHHHH
Q psy11966 40 FGLHLAVGAIERGECDHAIIGGVNLTLKPATSL 72 (99)
Q Consensus 40 ~Ai~~A~~~i~~G~~d~~l~gg~~~~~~~~~~~ 72 (99)
..+..|.+.++. +|++||.|++....|...+
T Consensus 193 ~~~~~a~~~~~~--aDlllviGTSl~V~pa~~l 223 (260)
T cd01409 193 DRVVTAAARLAE--ADALLVLGSSLMVYSGYRF 223 (260)
T ss_pred HHHHHHHHHHhc--CCEEEEeCcCceecchhhH
Confidence 357788888874 9999999999987765543
No 175
>COG1732 OpuBC Periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein) [Cell envelope biogenesis, outer membrane]
Probab=22.96 E-value=1.4e+02 Score=21.60 Aligned_cols=40 Identities=20% Similarity=0.151 Sum_probs=30.0
Q ss_pred HHhCCCCCcceecccchHHHHHHHHHHHHHHcCCCCEEEEEecCCCCCH
Q psy11966 20 PIFALAGPCCTIDTACSSTLFGLHLAVGAIERGECDHAIIGGVNLTLKP 68 (99)
Q Consensus 20 ~~~~l~Gp~~tv~~acaS~~~Ai~~A~~~i~~G~~d~~l~gg~~~~~~~ 68 (99)
|-|.++.+..+++.+ ..++++++|+.|++.+=++|.-+..
T Consensus 187 Yg~~~~~~~~~m~~g---------l~y~Al~~g~~d~~~~YsTDg~I~~ 226 (300)
T COG1732 187 YGFDFKPDLRTMDGG---------LTYQALKNGTVDAADAYSTDGRIAA 226 (300)
T ss_pred hCCccCCCceecCch---------HHHHHHHcCCCCeEeeccccccccc
Confidence 344444446777776 7899999999999999999885543
No 176
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=22.56 E-value=1.5e+02 Score=20.04 Aligned_cols=24 Identities=25% Similarity=0.343 Sum_probs=21.3
Q ss_pred hHHHHHHHHHHHHHHcCCCCEEEE
Q psy11966 36 SSTLFGLHLAVGAIERGECDHAII 59 (99)
Q Consensus 36 aS~~~Ai~~A~~~i~~G~~d~~l~ 59 (99)
+.+..+...|.++|.+++.|++|.
T Consensus 105 ~aa~~~w~~a~~~l~~~~ydlviL 128 (198)
T COG2109 105 AAAKAGWEHAKEALADGKYDLVIL 128 (198)
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEE
Confidence 577788999999999999999884
No 177
>cd01407 SIR2-fam SIR2 family of proteins includes silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation, where the acetyl group from the lysine epsilon-amino group is transferred to the ADP-ribose moiety of NAD+, producing nicotinamide and the novel metabolite O-acetyl-ADP-ribose. Sir2 proteins, also known as sirtuins, are found in all eukaryotes and many archaea and prokaryotes and have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. The most-studied function, gene silencing, involves the inactivation of chromosome domains containing key regulatory genes by packaging them into a specialized chromatin structure that is inaccessible to DNA-binding proteins. The oligomerization state of Sir2 appears to be organism-dependent, sometimes occurring as a monomer and sometimes as a multimer.
Probab=22.47 E-value=2.3e+02 Score=18.91 Aligned_cols=31 Identities=29% Similarity=0.415 Sum_probs=25.0
Q ss_pred HHHHHHHHHcCCCCEEEEEecCCCCCHHHHHHH
Q psy11966 42 LHLAVGAIERGECDHAIIGGVNLTLKPATSLMY 74 (99)
Q Consensus 42 i~~A~~~i~~G~~d~~l~gg~~~~~~~~~~~~~ 74 (99)
+..+.+.++. +|++|+.|+.....|...+..
T Consensus 158 ~~~a~~~~~~--~Dl~lvlGTSl~V~p~~~l~~ 188 (218)
T cd01407 158 LDEAAEALAK--ADLLLVIGTSLQVYPAAGLPL 188 (218)
T ss_pred HHHHHHHHhc--CCEEEEeCCCcccccHHHHHH
Confidence 7888888887 899999999987777665543
No 178
>cd01413 SIR2_Af2 SIR2_Af2: Archaeal and prokaryotic group which includes Archaeoglobus fulgidus Sir2-Af2, Sulfolobus solfataricus ssSir2, and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. The Sir2 homolog from the archaea Sulfolobus solftaricus deacetylates the non-specific DNA protein Alba to mediate transcription repression.
Probab=22.30 E-value=2e+02 Score=19.39 Aligned_cols=31 Identities=35% Similarity=0.350 Sum_probs=23.1
Q ss_pred HHHHHHHHHHcCCCCEEEEEecCCCCCHHHHHH
Q psy11966 41 GLHLAVGAIERGECDHAIIGGVNLTLKPATSLM 73 (99)
Q Consensus 41 Ai~~A~~~i~~G~~d~~l~gg~~~~~~~~~~~~ 73 (99)
.+..+.+.++ ++|++||.|++....|...+.
T Consensus 161 ~~~~a~~~~~--~~Dl~lvvGTSl~V~p~~~l~ 191 (222)
T cd01413 161 LLREAIEAAK--EADLFIVLGSSLVVYPANLLP 191 (222)
T ss_pred HHHHHHHHHh--cCCEEEEEccCCEeccHhHHH
Confidence 4566666666 599999999998777766443
No 179
>COG1029 FwdB Formylmethanofuran dehydrogenase subunit B [Energy production and conversion]
Probab=22.14 E-value=1.1e+02 Score=22.99 Aligned_cols=26 Identities=23% Similarity=0.227 Sum_probs=21.9
Q ss_pred HHHHHHcCCCCEEEEEecCCCCCHHH
Q psy11966 45 AVGAIERGECDHAIIGGVNLTLKPAT 70 (99)
Q Consensus 45 A~~~i~~G~~d~~l~gg~~~~~~~~~ 70 (99)
+.+.|++.++|.+++.|.|...+.+.
T Consensus 326 ~vdlL~~k~vDAalvi~sDp~ah~P~ 351 (429)
T COG1029 326 AVDLLKRKEVDAALVIASDPGAHFPR 351 (429)
T ss_pred HHHHHhccCCCeEEEEecCccccChH
Confidence 47889999999999999998666543
No 180
>PF03466 LysR_substrate: LysR substrate binding domain; InterPro: IPR005119 The structure of this domain is known and is similar to the periplasmic binding proteins []. This domain is found in members of the LysR family of prokaryotic transcriptional regulatory proteins IPR000847 from INTERPRO which share sequence similarities over approximately 280 residues including a putative helix-turn-helix DNA-binding motif at their N terminus.; PDB: 3ONM_B 3FZJ_J 3FXR_B 3N6T_A 3FXQ_A 3FXU_A 3N6U_A 2QSX_B 3HO7_B 1IZ1_B ....
Probab=22.12 E-value=1.2e+02 Score=18.66 Aligned_cols=35 Identities=26% Similarity=0.264 Sum_probs=23.3
Q ss_pred CCCcceecccchHHHHHHHHHHHHHHcCCCCEEEEEecC
Q psy11966 25 AGPCCTIDTACSSTLFGLHLAVGAIERGECDHAIIGGVN 63 (99)
Q Consensus 25 ~Gp~~tv~~acaS~~~Ai~~A~~~i~~G~~d~~l~gg~~ 63 (99)
+.|.+.+.---... ....+.|++|+.|++|.....
T Consensus 31 ~~P~i~i~~~~~~~----~~~~~~l~~g~~Dl~i~~~~~ 65 (209)
T PF03466_consen 31 RHPNIRIEIREGDS----DELIEALRSGELDLAITFGPP 65 (209)
T ss_dssp HSTTEEEEEEEESH----HHHHHHHHTTSSSEEEESSSS
T ss_pred HCCCcEEEEEeccc----hhhhHHHhcccccEEEEEeec
Confidence 34655554433332 445678999999999987766
No 181
>PF09970 DUF2204: Nucleotidyl transferase of unknown function (DUF2204); InterPro: IPR018700 This family of hypothetical prokaryotic proteins has no known function.
Probab=22.09 E-value=99 Score=20.28 Aligned_cols=24 Identities=17% Similarity=0.333 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHcCCCCEEEEEecC
Q psy11966 40 FGLHLAVGAIERGECDHAIIGGVN 63 (99)
Q Consensus 40 ~Ai~~A~~~i~~G~~d~~l~gg~~ 63 (99)
.++...++.|+....+.+|+||.=
T Consensus 3 ~~l~~~~~~L~~~gv~~~ivGG~a 26 (181)
T PF09970_consen 3 EALKEILEELNKRGVEYVIVGGAA 26 (181)
T ss_pred HHHHHHHHHHHHcCCeEEEECHHH
Confidence 456677777777777888888763
No 182
>TIGR01096 3A0103s03R lysine-arginine-ornithine-binding periplasmic protein.
Probab=21.94 E-value=1.1e+02 Score=20.00 Aligned_cols=19 Identities=16% Similarity=0.135 Sum_probs=16.0
Q ss_pred HHHHHHHHHcCCCCEEEEE
Q psy11966 42 LHLAVGAIERGECDHAIIG 60 (99)
Q Consensus 42 i~~A~~~i~~G~~d~~l~g 60 (99)
...+.++|..|++|.++.-
T Consensus 162 ~~~~~~~L~~g~vD~~v~~ 180 (250)
T TIGR01096 162 YDNANMDLKAGRIDAVFTD 180 (250)
T ss_pred HHHHHHHHHcCCCCEEEeC
Confidence 4677899999999998863
No 183
>TIGR03871 ABC_peri_MoxJ_2 quinoprotein dehydrogenase-associated probable ABC transporter substrate-binding protein. This protein family, a sister family to TIGR03870, is found more broadly. It occurs a range of PQQ-biosynthesizing species, not just in known methanotrophs. Interpretation of evidence by homology and by direct experimental work suggest two different roles. By homology, this family appears to be the periplasmic substrate-binding protein of an ABC transport family. However, mutational studies and direct characterization for some sequences related to this family suggests this family may act as a maturation chaperone or additional subunit of a methanol dehydrogenase-like enzyme.
Probab=21.92 E-value=1.1e+02 Score=19.81 Aligned_cols=20 Identities=35% Similarity=0.365 Sum_probs=16.6
Q ss_pred HHHHHHHHHcCCCCEEEEEe
Q psy11966 42 LHLAVGAIERGECDHAIIGG 61 (99)
Q Consensus 42 i~~A~~~i~~G~~d~~l~gg 61 (99)
...+.+++.+|++|+++.-.
T Consensus 143 ~~~~~~~l~~G~~Da~i~~~ 162 (232)
T TIGR03871 143 PGRMVEDLAAGEIDVAIVWG 162 (232)
T ss_pred HHHHHHHHHcCCcCEEEecc
Confidence 46789999999999998743
No 184
>PRK05312 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Provisional
Probab=21.85 E-value=1.3e+02 Score=22.01 Aligned_cols=29 Identities=17% Similarity=0.307 Sum_probs=24.1
Q ss_pred hHHHHHHHHHHHHHHcCCCCEEEEEecCC
Q psy11966 36 SSTLFGLHLAVGAIERGECDHAIIGGVNL 64 (99)
Q Consensus 36 aS~~~Ai~~A~~~i~~G~~d~~l~gg~~~ 64 (99)
..+..+|..|++..++|++|.++.+..+.
T Consensus 97 ~aa~~~l~~A~~~~~~g~~daiVTaPinK 125 (336)
T PRK05312 97 AGVIAAIERAVGLVLSGEAAAVVTAPIAK 125 (336)
T ss_pred HHHHHHHHHHHHHHHcCCCCEEEECCcCH
Confidence 45566799999999999999999876654
No 185
>PRK03670 competence damage-inducible protein A; Provisional
Probab=21.76 E-value=1.9e+02 Score=20.11 Aligned_cols=57 Identities=11% Similarity=-0.020 Sum_probs=36.8
Q ss_pred cCCCcchHHhHHHHHhCCCCCcceecccchHHHHHHHHHHHHHHcCCCCEEEEEecC
Q psy11966 7 VAPSTPRAAKSNSPIFALAGPCCTIDTACSSTLFGLHLAVGAIERGECDHAIIGGVN 63 (99)
Q Consensus 7 ~~~~~~~~~~~ia~~~~l~Gp~~tv~~acaS~~~Ai~~A~~~i~~G~~d~~l~gg~~ 63 (99)
.+...+..+..++..+.-.|-......-+.--...|..+.+......+|++|+.|.-
T Consensus 14 ~G~i~dtN~~~la~~L~~~G~~v~~~~iV~Dd~~~I~~~l~~a~~~~~DlVIttGGl 70 (252)
T PRK03670 14 TGNTVDSNSAFIAQKLTEKGYWVRRITTVGDDVEEIKSVVLEILSRKPEVLVISGGL 70 (252)
T ss_pred CCeEEehhHHHHHHHHHHCCCEEEEEEEcCCCHHHHHHHHHHHhhCCCCEEEECCCc
Confidence 344555666677777666665444444455566677777776655568999887653
No 186
>TIGR03870 ABC_MoxJ methanol oxidation system protein MoxJ. This predicted periplasmic protein, called MoxJ or MxaJ, is required for methanol oxidation in Methylobacterium extorquens. Two differing lines of evidence suggest two different roles. Forming one view, homology suggests it is the substrate-binding protein of an ABC transporter associated with methanol oxidation. The gene, furthermore, is found regular in genomes with, and only two or three genes away from, a corresponding permease and ATP-binding cassette gene pair. The other view is that this protein is an accessory factor or additional subunit of methanol dehydrogenase itself. Mutational studies show a dependence on this protein for expression of the PQQ-dependent, two-subunit methanol dehydrogenase (MxaF and MxaI) in Methylobacterium extorquens, as if it is a chaperone for enzyme assembly or a third subunit. A homologous N-terminal sequence was found in Paracoccus denitrificans as a 32Kd third subunit. This protein may, in
Probab=21.48 E-value=1.1e+02 Score=20.48 Aligned_cols=19 Identities=21% Similarity=0.267 Sum_probs=16.0
Q ss_pred HHHHHHHHcCCCCEEEEEe
Q psy11966 43 HLAVGAIERGECDHAIIGG 61 (99)
Q Consensus 43 ~~A~~~i~~G~~d~~l~gg 61 (99)
..+.++|++|++|+++.-.
T Consensus 153 ~~~~~aL~~GrvDa~i~~~ 171 (246)
T TIGR03870 153 RKLVSEVATGKADLAVAFA 171 (246)
T ss_pred HHHHHHHHcCCCCEEEeeH
Confidence 4678999999999988653
No 187
>COG0280 Pta Phosphotransacetylase [Energy production and conversion]
Probab=21.16 E-value=1.9e+02 Score=21.20 Aligned_cols=25 Identities=24% Similarity=0.219 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHcCCCCEEEEEecCC
Q psy11966 40 FGLHLAVGAIERGECDHAIIGGVNL 64 (99)
Q Consensus 40 ~Ai~~A~~~i~~G~~d~~l~gg~~~ 64 (99)
.....|..+++.|++|.+++|.+..
T Consensus 104 d~~~~a~~mv~~g~aD~~v~G~~~t 128 (327)
T COG0280 104 DPTVFAAMMVALGEADGLVSGAVHT 128 (327)
T ss_pred CcHHHHHHHHHcCCCCEEEecCccC
Confidence 5678899999999999999988876
No 188
>PF02142 MGS: MGS-like domain This is a subfamily of this family; InterPro: IPR011607 This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. The known structures in this domain show a common phosphate binding site []. ; PDB: 4A1O_A 3ZZM_A 1ZCZ_A 1M6V_C 1CS0_C 1C30_E 1C3O_G 1BXR_A 1T36_E 1A9X_A ....
Probab=21.14 E-value=87 Score=17.92 Aligned_cols=19 Identities=21% Similarity=0.188 Sum_probs=14.8
Q ss_pred HHHHHHHcCCCCEEEEEec
Q psy11966 44 LAVGAIERGECDHAIIGGV 62 (99)
Q Consensus 44 ~A~~~i~~G~~d~~l~gg~ 62 (99)
+..+.|+.|+.|++|.--.
T Consensus 51 ~i~~~i~~~~IdlVIn~~~ 69 (95)
T PF02142_consen 51 QIMDLIKNGKIDLVINTPY 69 (95)
T ss_dssp HHHHHHHTTSEEEEEEE--
T ss_pred HHHHHHHcCCeEEEEEeCC
Confidence 6788999999998886544
No 189
>PRK03743 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Validated
Probab=20.98 E-value=1.7e+02 Score=21.40 Aligned_cols=29 Identities=14% Similarity=0.115 Sum_probs=24.7
Q ss_pred hHHHHHHHHHHHHHHcCCCCEEEEEecCC
Q psy11966 36 SSTLFGLHLAVGAIERGECDHAIIGGVNL 64 (99)
Q Consensus 36 aS~~~Ai~~A~~~i~~G~~d~~l~gg~~~ 64 (99)
..+..+|..|++..++|++|.++.+..+.
T Consensus 98 ~aa~~~l~~A~~~~~~g~~~alVTaPinK 126 (332)
T PRK03743 98 KAAFEYIKKSVELAMEGKVDAVATTPINK 126 (332)
T ss_pred HHHHHHHHHHHHHHHcCCCCEEEECCcCH
Confidence 46677899999999999999999876654
No 190
>PRK01909 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Validated
Probab=20.89 E-value=1.5e+02 Score=21.61 Aligned_cols=30 Identities=17% Similarity=0.086 Sum_probs=24.8
Q ss_pred chHHHHHHHHHHHHHHcCCCCEEEEEecCC
Q psy11966 35 CSSTLFGLHLAVGAIERGECDHAIIGGVNL 64 (99)
Q Consensus 35 caS~~~Ai~~A~~~i~~G~~d~~l~gg~~~ 64 (99)
-..+..+|..|++..++|++|.++.+..+.
T Consensus 89 G~aa~~~l~~A~~~~~~g~~~aivTaPinK 118 (329)
T PRK01909 89 GRYVLDLLDAAIDGALAGRYDAIVTAPLQK 118 (329)
T ss_pred HHHHHHHHHHHHHHHHcCCCCEEEeCCcCH
Confidence 345667799999999999999999886654
No 191
>cd08439 PBP2_LrhA_like The C-terminal substrate domain of LysR-like regulator LrhA (LysR homologue A) and that of closely related homologs, contains the type 2 periplasmic binding fold. This CD represents the LrhA subfamily of LysR-like bacterial transcriptional regulators, including LrhA, HexA, PecT, and DgdR. LrhA is involved in control of the transcription of flagellar, motility, and chemotaxis genes by regulating the synthesis and concentration of FlhD(2)C(2), the master regulator for the expression of flagellar and chemotaxis genes. The LrhA protein has strong homology to HexA and PecT from plant pathogenic bacteria, in which HexA and PecT act as repressors of motility and of virulence factors, such as exoenzymes required for lytic reactions. DgdR also shares similar characteristics to those of LrhA, HexA and PecT. The topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a vari
Probab=20.85 E-value=1.3e+02 Score=18.18 Aligned_cols=36 Identities=36% Similarity=0.510 Sum_probs=24.2
Q ss_pred hCCCCCcceecccchHHHHHHHHHHHHHHcCCCCEEEEEe
Q psy11966 22 FALAGPCCTIDTACSSTLFGLHLAVGAIERGECDHAIIGG 61 (99)
Q Consensus 22 ~~l~Gp~~tv~~acaS~~~Ai~~A~~~i~~G~~d~~l~gg 61 (99)
|.-+.|...++--.... ....+.+++|++|++|+.+
T Consensus 22 ~~~~~P~v~i~~~~~~~----~~~~~~l~~~~~Dl~i~~~ 57 (185)
T cd08439 22 FASVYPRLAIEVVCKRT----PRLMEMLERGEVDLALITH 57 (185)
T ss_pred HHHHCCCeEEEEEECCh----HHHHHHHHCCCCcEEEEec
Confidence 44456777776543322 2446789999999999864
No 192
>PTZ00409 Sir2 (Silent Information Regulator) protein; Provisional
Probab=20.71 E-value=2.9e+02 Score=19.40 Aligned_cols=32 Identities=31% Similarity=0.492 Sum_probs=24.6
Q ss_pred HHHHHHHHHHcCCCCEEEEEecCCCCCHHHHHHH
Q psy11966 41 GLHLAVGAIERGECDHAIIGGVNLTLKPATSLMY 74 (99)
Q Consensus 41 Ai~~A~~~i~~G~~d~~l~gg~~~~~~~~~~~~~ 74 (99)
.+..|.++++ ++|+.||.|++....|...+..
T Consensus 189 ~~~~a~~~~~--~aDlllviGTSl~V~pa~~l~~ 220 (271)
T PTZ00409 189 LLKQAEKEID--KCDLLLVVGTSSSVSTATNLCY 220 (271)
T ss_pred HHHHHHHHHH--cCCEEEEECCCCcccCHHHHHH
Confidence 4666777666 5999999999998887775553
No 193
>PF00885 DMRL_synthase: 6,7-dimethyl-8-ribityllumazine synthase; InterPro: IPR002180 6,7-dimethyl-8-ribityllumazine synthase (riboflavin synthase) catalyses the biosynthesis of riboflavin according to the reaction: 2 6,7-dimethyl-8-(1-D-ribityl)lumazine = riboflavin + 4-(1-D-ribitylamino)-5-amino-2,6-dihydroxypyrimidine. The biosynthesis of one riboflavin molecule requires one molecule of GTP and two molecules of ribulose 5-phosphate as substrates. The final step in the biosynthesis of the vitamin involves the dismutation of 6,7-dimethyl-8-ribityllumazine catalyzed by riboflavin synthase. The second product, 5-amino-6-ribitylamino-2,4(1H,3H)-pyrimidinedione, is recycled in the biosynthetic pathway by 6,7-dimethyl-8-ribityllumazine synthase []. N-[2,4-dioxo-6-d-ribitylamino-1,2,3,4-tetrahydropyrimidin-5-yl]oxalamic acid derivatives inhibit riboflavin synthase []. This family includes the beta chain of 6,7-dimethyl-8-ribityllumazine synthase 2.5.1.9 from EC. The family also includes a subfamily of distant archaebacterial proteins that may also have the same function for example O28856 from SWISSPROT.; GO: 0009231 riboflavin biosynthetic process, 0009349 riboflavin synthase complex; PDB: 2O6H_D 1C41_C 2OBX_H 1VSX_H 1VSW_3 3JV8_C 3MK3_r 3NQ4_G 2A58_A 2A57_D ....
Probab=20.61 E-value=1.1e+02 Score=19.35 Aligned_cols=23 Identities=26% Similarity=0.050 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHcCCCCEEEEEec
Q psy11966 40 FGLHLAVGAIERGECDHAIIGGV 62 (99)
Q Consensus 40 ~Ai~~A~~~i~~G~~d~~l~gg~ 62 (99)
.--..+.+.++++++|.+|+-|+
T Consensus 49 ElP~a~~~l~~~~~~Davi~lG~ 71 (144)
T PF00885_consen 49 ELPLAAKRLAESGRYDAVIALGC 71 (144)
T ss_dssp GHHHHHHHHHHCSTESEEEEEEE
T ss_pred HHHHHHHHHhcccCccEEEEecc
Confidence 33444556778999999999994
No 194
>PRK03946 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Provisional
Probab=20.39 E-value=1.6e+02 Score=21.27 Aligned_cols=29 Identities=17% Similarity=0.141 Sum_probs=24.1
Q ss_pred hHHHHHHHHHHHHHHcCCCCEEEEEecCC
Q psy11966 36 SSTLFGLHLAVGAIERGECDHAIIGGVNL 64 (99)
Q Consensus 36 aS~~~Ai~~A~~~i~~G~~d~~l~gg~~~ 64 (99)
..+..+|..|.+..++|+.|.++.+..+.
T Consensus 79 ~aa~~~l~~A~~~~~~G~~dalVTaPinK 107 (307)
T PRK03946 79 AYSFESFKKAVELADSKEVDAIVTLPINK 107 (307)
T ss_pred HHHHHHHHHHHHHHHcCCCCEEEECCcCH
Confidence 44566799999999999999999876654
No 195
>PF03846 SulA: Cell division inhibitor SulA; InterPro: IPR004596 All proteins in this family for which the functions are known are cell division inhibitors. In Escherichia coli, SulA is one of the SOS regulated genes. Accumulation of SulA causes rapid cessation of cell division and the appearance of long, non-septate filaments. In the presence of GTP, SulA binds a polymerisation-competent form of ftsZ in a 1:1 ratio, thus inhibiting ftsZ polymerisation and therefore preventing it from participating in the assembly of the Z ring. This mechanism prevents the premature segregation of damaged DNA to daughter cells during cell division. The expression of SulA is repressed by LexA. The N terminus of SulA may be involved in recognising the cell division apparatus.; GO: 0009432 SOS response, 0051782 negative regulation of cell division, 0009276 Gram-negative-bacterium-type cell wall; PDB: 1OFU_X 1OFT_A.
Probab=20.33 E-value=1.1e+02 Score=19.00 Aligned_cols=22 Identities=14% Similarity=0.072 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHcCCCCEEEE
Q psy11966 38 TLFGLHLAVGAIERGECDHAII 59 (99)
Q Consensus 38 ~~~Ai~~A~~~i~~G~~d~~l~ 59 (99)
...++....++|++|.+-+||.
T Consensus 95 ~~~tl~amekAL~sGn~s~Vl~ 116 (119)
T PF03846_consen 95 PQSTLEAMEKALRSGNYSAVLG 116 (119)
T ss_dssp TTHHHHHHHHHHHHT-EEEEEE
T ss_pred cccHHHHHHHHHHhCCCeEEEE
Confidence 3456788888999999988874
No 196
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=20.19 E-value=1.3e+02 Score=19.76 Aligned_cols=25 Identities=36% Similarity=0.380 Sum_probs=19.0
Q ss_pred chHHHHHHHHHHHHHHcCCCCEEEE
Q psy11966 35 CSSTLFGLHLAVGAIERGECDHAII 59 (99)
Q Consensus 35 caS~~~Ai~~A~~~i~~G~~d~~l~ 59 (99)
-...-.++..|...|.+|++|++|.
T Consensus 78 ~~~~~~~~~~a~~~i~~~~~dlvIL 102 (172)
T PF02572_consen 78 RAAAREGLEEAKEAISSGEYDLVIL 102 (172)
T ss_dssp HHHHHHHHHHHHHHTT-TT-SEEEE
T ss_pred HHHHHHHHHHHHHHHhCCCCCEEEE
Confidence 3566778899999999999999884
No 197
>TIGR00557 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase. This model represents PdxA, an NAD+-dependent 4-hydroxythreonine 4-phosphate dehydrogenase (EC 1.1.1.262) active in pyridoxal phosphate biosynthesis.
Probab=20.09 E-value=1.5e+02 Score=21.51 Aligned_cols=29 Identities=21% Similarity=0.171 Sum_probs=24.1
Q ss_pred hHHHHHHHHHHHHHHcCCCCEEEEEecCC
Q psy11966 36 SSTLFGLHLAVGAIERGECDHAIIGGVNL 64 (99)
Q Consensus 36 aS~~~Ai~~A~~~i~~G~~d~~l~gg~~~ 64 (99)
..+..++..|++..+.|++|.++.+..+.
T Consensus 90 ~aa~~~l~~A~~~~~~g~~~aiVTaPi~K 118 (320)
T TIGR00557 90 AYVFETLERAVELCLAGEADALVTAPIHK 118 (320)
T ss_pred HHHHHHHHHHHHHHHcCCCCEEEECCcCH
Confidence 44566799999999999999999886654
No 198
>cd08451 PBP2_BudR The C-terminal substrate binding domain of LysR-type transcrptional regulator BudR, which is responsible for activation of the expression of the butanediol operon genes; contains the type 2 periplasmic binding fold. This CD represents the substrate binding domain of BudR regulator, which is responsible for induction of the butanediol formation pathway under fermentative growth conditions. Three enzymes are involved in the production of 1 mol of 2,3 butanediol from the condensation of 2 mol of pyruvate with acetolactate and acetoin as intermediates: acetolactate synthetase, acetolactate decarboxylase, and acetoin reductase. In Klebsiella terrigena, BudR regulates the expression of the budABC operon genes, encoding these three enzymes of the butanediol pathway. In many bacterial species, the use of this pathway can prevent intracellular acidification by diverting metabolism from acid production to the formation of neutral compounds (acetoin and butanediol). This substra
Probab=20.06 E-value=1.3e+02 Score=18.17 Aligned_cols=38 Identities=18% Similarity=0.157 Sum_probs=22.9
Q ss_pred HHhCCCCCcceecccchHHHHHHHHHHHHHHcCCCCEEEEEe
Q psy11966 20 PIFALAGPCCTIDTACSSTLFGLHLAVGAIERGECDHAIIGG 61 (99)
Q Consensus 20 ~~~~l~Gp~~tv~~acaS~~~Ai~~A~~~i~~G~~d~~l~gg 61 (99)
..|.-+-|...+.---.+ -....+.+++|++|++|...
T Consensus 21 ~~~~~~~P~i~l~i~~~~----~~~~~~~l~~g~~Dl~i~~~ 58 (199)
T cd08451 21 RRFREAYPDVELTLEEAN----TAELLEALREGRLDAAFVRP 58 (199)
T ss_pred HHHHHHCCCcEEEEecCC----hHHHHHHHHCCCccEEEEec
Confidence 334445575555432111 13456789999999999754
Done!