RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11966
(99 letters)
>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme,
megasynthase, fatty acid synthesis; 3.2A {Sus scrofa}
PDB: 2vz9_A*
Length = 2512
Score = 101 bits (253), Expect = 7e-27
Identities = 40/77 (51%), Positives = 47/77 (61%)
Query: 19 SPIFALAGPCCTIDTACSSTLFGLHLAVGAIERGECDHAIIGGVNLTLKPATSLMYHKYN 78
S F GP TIDTACSS+L L A AI GEC A++GG+N+ LKP +SL + K
Sbjct: 145 SFFFDFKGPSITIDTACSSSLLALQSAYQAIRGGECSAAVVGGLNVLLKPNSSLQFMKLG 204
Query: 79 MLSPTGTISPFDASGVG 95
MLS GT FDA G G
Sbjct: 205 MLSQDGTCRSFDAEGTG 221
>3hhd_A Fatty acid synthase; transferase, multienzyme, megasynthase, fatty
acid synthesis, acetylation, cytoplasm, fatty acid
biosynthesis, hydrolase; 2.15A {Homo sapiens} PDB:
2jfk_A* 2jfd_A
Length = 965
Score = 94.9 bits (237), Expect = 1e-24
Identities = 36/74 (48%), Positives = 46/74 (62%)
Query: 22 FALAGPCCTIDTACSSTLFGLHLAVGAIERGECDHAIIGGVNLTLKPATSLMYHKYNMLS 81
F GP +DTACSS+L L A AI G+C AI+GG+N+ LKP TS+ + + MLS
Sbjct: 150 FDFRGPSIALDTACSSSLMALQNAYQAIHSGQCPAAIVGGINVLLKPNTSVQFLRLGMLS 209
Query: 82 PTGTISPFDASGVG 95
P GT FD +G G
Sbjct: 210 PEGTCKAFDTAGNG 223
>2hg4_A DEBS, 6-deoxyerythronolide B synthase; ketosynthase,
acyltransferase, module 5, transferase; 2.73A
{Saccharopolyspora erythraea}
Length = 917
Score = 79.2 bits (196), Expect = 5e-19
Identities = 27/71 (38%), Positives = 36/71 (50%)
Query: 22 FALAGPCCTIDTACSSTLFGLHLAVGAIERGECDHAIIGGVNLTLKPATSLMYHKYNMLS 81
L GP T+DTACSS L LHLA+ ++ R EC A+ GGV + P + L+
Sbjct: 186 LGLEGPAMTVDTACSSGLTALHLAMESLRRDECGLALAGGVTVMSSPGAFTEFRSQGGLA 245
Query: 82 PTGTISPFDAS 92
G PF +
Sbjct: 246 ADGRCKPFSKA 256
>2qo3_A Eryaii erythromycin polyketide synthase modules 3; ketosynthase,
acyltransferase, phosphopantetheine, transfera; 2.59A
{Saccharopolyspora erythraea}
Length = 915
Score = 78.4 bits (194), Expect = 8e-19
Identities = 25/71 (35%), Positives = 38/71 (53%)
Query: 22 FALAGPCCTIDTACSSTLFGLHLAVGAIERGECDHAIIGGVNLTLKPATSLMYHKYNMLS 81
L GP ++DTACSS+L LHLAV ++ +GE A++GG + P + + + L+
Sbjct: 164 MGLEGPSISVDTACSSSLVALHLAVESLRKGESSMAVVGGAAVMATPGVFVDFSRQRALA 223
Query: 82 PTGTISPFDAS 92
G F A
Sbjct: 224 ADGRSKAFGAG 234
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 44.5 bits (105), Expect = 9e-07
Identities = 14/58 (24%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Query: 4 FVLVAPSTPRAAKSNSPIFALAGPCCTIDTACSSTLFGLHLAVGAIERGECDHAIIGG 61
+T +A N + + +GP T AC++++ + + V I G+ I+GG
Sbjct: 1076 LQESFINTM-SAWVNMLLISSSGPIKTPVGACATSVESVDIGVETILSGKARICIVGG 1132
>2uv8_A Fatty acid synthase subunit alpha (FAS2); fatty acid biosynthesis,
malonyl/palmitoyl transferase, phosphopantetheine,
transferase; HET: GVL FMN; 3.10A {Saccharomyces
cerevisiae} PDB: 2vkz_A* 3hmj_A*
Length = 1887
Score = 38.0 bits (88), Expect = 2e-04
Identities = 13/48 (27%), Positives = 25/48 (52%)
Query: 14 AAKSNSPIFALAGPCCTIDTACSSTLFGLHLAVGAIERGECDHAIIGG 61
+A N + + +GP T AC++++ + + V I G+ I+GG
Sbjct: 1284 SAWVNMLLISSSGPIKTPVGACATSVESVDIGVETILSGKARICIVGG 1331
>3goa_A 3-ketoacyl-COA thiolase; metabolism, fatty acid, phospholipid,
IDP01071, acyltransferase, cytoplasm, fatty acid
metabolism; 1.70A {Salmonella typhimurium}
Length = 387
Score = 36.7 bits (86), Expect = 4e-04
Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 5/44 (11%)
Query: 24 LAG-----PCCTIDTACSSTLFGLHLAVGAIERGECDHAIIGGV 62
LA P T++ C S++ LH A I G+ ++GGV
Sbjct: 75 LAEIPHSVPAVTVNRLCGSSMQALHDAARMIMTGDAQVCLVGGV 118
>2uv9_A Fatty acid synthase alpha subunits; fungal, dehydratase, enoyl
reductase, ketoacyl synthase, ketoacyl reductase; 3.1A
{Thermomyces lanuginosus} PDB: 2uvb_A*
Length = 1878
Score = 36.5 bits (84), Expect = 6e-04
Identities = 13/48 (27%), Positives = 23/48 (47%)
Query: 14 AAKSNSPIFALAGPCCTIDTACSSTLFGLHLAVGAIERGECDHAIIGG 61
AA N + + GP T AC++ + L + I +G+ ++GG
Sbjct: 1259 AAWVNMLLLSSTGPIKTPVGACATAVESLDVGYDTIMQGKARVCLVGG 1306
>1wdk_C 3-ketoacyl-COA thiolase; alpha2BETA2 heterotetrameric complex,
lyase, oxidoreductase/transferase complex, lyase; HET:
ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: c.95.1.1
c.95.1.1 PDB: 1wdl_C* 1wdm_C* 2d3t_C*
Length = 390
Score = 35.9 bits (84), Expect = 8e-04
Identities = 13/44 (29%), Positives = 19/44 (43%), Gaps = 5/44 (11%)
Query: 24 LAG-----PCCTIDTACSSTLFGLHLAVGAIERGECDHAIIGGV 62
+ T+ C S++ LH A AI G D ++GGV
Sbjct: 78 MTQIPHTSAAQTVSRLCGSSMSALHTAAQAIMTGNGDVFVVGGV 121
>1tqy_A Beta-ketoacyl synthase/acyl transferase;
alpha-beta-alpha-beta-alpha, heterodimer, transferase;
2.00A {Streptomyces coelicolor} SCOP: c.95.1.1 c.95.1.1
Length = 424
Score = 33.2 bits (77), Expect = 0.006
Identities = 15/44 (34%), Positives = 18/44 (40%), Gaps = 8/44 (18%)
Query: 22 FALAGPCCTIDTACSSTLFGLHLAVG----AIERGECDHAIIGG 61
GP + T C+S GL +VG AIE G D G
Sbjct: 156 VGAEGPVTMVSTGCTS---GLD-SVGNAVRAIEEGSADVMFAGA 195
>3kzu_A 3-oxoacyl-(acyl-carrier-protein) synthase II; seattle structural
genomics center for infectious disease, ssgcid,
acyltransferase; 1.75A {Brucella melitensis} PDB: 3e60_A
Length = 428
Score = 32.5 bits (75), Expect = 0.010
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 8/44 (18%)
Query: 22 FALAGPCCTIDTACSSTLFGLHLAVG----AIERGECDHAIIGG 61
L GP ++ TAC++ G H A+G I G+ D + GG
Sbjct: 165 HKLRGPNHSVVTACAT---GTH-AIGDAARLIAFGDADVMVAGG 204
>4ddo_A 3-oxoacyl-[acyl-carrier-protein] synthase 2; ssgcid, struct
genomics, seattle structural genomics center for
infectious transferase; 1.90A {Burkholderia
vietnamiensis} PDB: 4f32_A*
Length = 451
Score = 32.5 bits (75), Expect = 0.011
Identities = 13/44 (29%), Positives = 18/44 (40%), Gaps = 8/44 (18%)
Query: 22 FALAGPCCTIDTACSSTLFGLHLAVG----AIERGECDHAIIGG 61
GP TAC++ + A+G I GE D + GG
Sbjct: 180 HRFRGPLGCPVTACAA---SVQ-AIGDAMRMIRTGEADVVLAGG 219
>1ox0_A Beta ketoacyl-acyl carrier protein synthase; transferase; 1.30A
{Streptococcus pneumoniae} SCOP: c.95.1.1 c.95.1.1 PDB:
1oxh_A 2alm_A 2rjt_A
Length = 430
Score = 32.5 bits (75), Expect = 0.012
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 8/44 (18%)
Query: 22 FALAGPCCTIDTACSSTLFGLHLAVG----AIERGECDHAIIGG 61
F G C +I+TACSS A+G +I+ G D ++GG
Sbjct: 170 FGANGVCKSINTACSS---SND-AIGDAFRSIKFGFQDVMLVGG 209
>3svk_A Acetyl-COA acetyltransferase; ssgcid, NIH, niaid, SBRI, UW, emerald
biostructures, structu genomics; 2.20A {Mycobacterium
avium}
Length = 407
Score = 32.1 bits (74), Expect = 0.014
Identities = 9/36 (25%), Positives = 16/36 (44%)
Query: 27 PCCTIDTACSSTLFGLHLAVGAIERGECDHAIIGGV 62
++ C+S L ++ A + G D + GGV
Sbjct: 88 GGVQLNRFCASGLEAVNTAAQKVRSGWDDLVLAGGV 123
>3o04_A LMO2201 protein, beta-keto-acyl carrier protein synthase II; csgid,
structural genomics; 1.85A {Listeria monocytogenes}
Length = 413
Score = 32.1 bits (74), Expect = 0.014
Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 8/44 (18%)
Query: 22 FALAGPCCTIDTACSSTLFGLHLAVG----AIERGECDHAIIGG 61
F G T TAC++ + ++G IERG+ D I GG
Sbjct: 151 FGAKGINSTTVTACAT---ATN-SIGDAFKVIERGDADAMITGG 190
>3ho9_A 3-oxoacyl-[acyl-carrier-protein] synthase 2; FABF, platensimycin,
platencin A1, KAS2, acyltransferase, fatty acid
biosynthesis; HET: N3A; 1.90A {Escherichia coli} PDB:
3hnz_A* 3ho2_A* 3i8p_A* 3g11_A* 2gfx_A* 3g0y_A* 2gfv_A*
2gfw_A 2gfy_A* 1kas_A 1b3n_A
Length = 427
Score = 32.1 bits (74), Expect = 0.015
Identities = 13/40 (32%), Positives = 20/40 (50%)
Query: 22 FALAGPCCTIDTACSSTLFGLHLAVGAIERGECDHAIIGG 61
+ L GP +I TA +S + + A I G+ D + GG
Sbjct: 165 YGLRGPSISIATAATSGVHNIGHAARIIAYGDADVMVAGG 204
>1e5m_A KAS II, beta ketoacyl acyl carrier protein synthase II; condensing
enzyme, biosynthetic role, carbon-carbon bond formation;
1.54A {Synechocystis SP} SCOP: c.95.1.1 c.95.1.1
Length = 416
Score = 32.1 bits (74), Expect = 0.015
Identities = 12/44 (27%), Positives = 18/44 (40%), Gaps = 8/44 (18%)
Query: 22 FALAGPCCTIDTACSSTLFGLHLAVG----AIERGECDHAIIGG 61
GP TAC++ G + A+G ++ G I GG
Sbjct: 154 LGAKGPNNCTVTACAA---GSN-AIGDAFRLVQNGYAKAMICGG 193
>2gqd_A 3-oxoacyl-[acyl-carrier-protein] synthase 2; duplicated babababb
fold, transferase; 2.30A {Staphylococcus aureus}
Length = 437
Score = 32.1 bits (74), Expect = 0.015
Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 8/44 (18%)
Query: 22 FALAGPCCTIDTACSSTLFGLHLAVG----AIERGECDHAIIGG 61
GP TAC++ G + ++G ++RG+ D I GG
Sbjct: 175 LGAKGPNGATVTACAT---GTN-SIGEAFKIVQRGDADAMITGG 214
>2iwz_A 3-oxoacyl-[acyl-carrier-protein] synthase; mitochondria,
mitochondrion, lipid synthesis, fatty acid SYN fatty
acid biosynthesis; 1.65A {Homo sapiens} PDB: 2iwy_A
2c9h_A
Length = 438
Score = 32.1 bits (74), Expect = 0.016
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 8/44 (18%)
Query: 22 FALAGPCCTIDTACSSTLFGLHLAVG----AIERGECDHAIIGG 61
+ L GP + TAC++ G H AVG I G+ D + GG
Sbjct: 175 YKLKGPNHAVSTACTT---GAH-AVGDSFRFIAHGDADVMVAGG 214
>1j3n_A 3-oxoacyl-(acyl-carrier protein) synthase II; condensing enzymes,
fatty acid elongation, acyl-carrier protein (ACP); HET:
CIT; 2.00A {Thermus thermophilus} SCOP: c.95.1.1
c.95.1.1
Length = 408
Score = 32.1 bits (74), Expect = 0.017
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 8/44 (18%)
Query: 22 FALAGPCCTIDTACSSTLFGLHLAVG----AIERGECDHAIIGG 61
+ GP T+ TAC++ G A+G I+ GE D + GG
Sbjct: 148 YGFTGPSSTVVTACAT---GAD-ALGSALRMIQLGEADLVLAGG 187
>2gp6_A 3-oxoacyl-[acyl-carrier-protein] synthase 2; thiolase fold,
structural genomics, PSI, protein structure initiative;
2.40A {Mycobacterium tuberculosis}
Length = 434
Score = 32.1 bits (74), Expect = 0.018
Identities = 15/45 (33%), Positives = 18/45 (40%), Gaps = 8/45 (17%)
Query: 22 FALAGPCCTIDTACSSTLFGLHLAVG----AIERGECDHAIIGGV 62
T +AC+S G A+ I GE D AI GGV
Sbjct: 174 RHAKAGVMTPVSACAS---GAE-AIARAWQQIVLGEADAAICGGV 214
>2wge_A 3-oxoacyl-[acyl-carrier-protein] synthase 1; beta ketoacyl synthase
I thiolactomycin, cytoplasm, transferase,
acyltransferase; HET: TLM; 1.80A {Mycobacterium
tuberculosis} PDB: 2wgd_A* 2wgg_A* 2wgf_A*
Length = 416
Score = 32.1 bits (74), Expect = 0.019
Identities = 13/44 (29%), Positives = 17/44 (38%), Gaps = 8/44 (18%)
Query: 22 FALAGPCCTIDTACSSTLFGLHLAVG----AIERGECDHAIIGG 61
T +ACSS G A+ I G+ D A+ GG
Sbjct: 158 LGARAGVMTPVSACSS---GSE-AIAHAWRQIVMGDADVAVCGG 197
>2ix4_A 3-oxoacyl-[acyl-carrier-protein] synthase; beta-ketoacyl-(acyl
carrier protein) synthase, lipid metabol condensing
enzyme; 1.95A {Arabidopsis thaliana} SCOP: c.95.1.1
c.95.1.1 PDB: 1w0i_A
Length = 431
Score = 31.8 bits (73), Expect = 0.020
Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 8/44 (18%)
Query: 22 FALAGPCCTIDTACSSTLFGLHLAVG----AIERGECDHAIIGG 61
+ GP TAC++ G H ++G I+ G+ D + GG
Sbjct: 166 YGFQGPNHAAVTACAT---GAH-SIGDATRMIQFGDADVMVAGG 205
>2wu9_A 3-ketoacyl-COA thiolase 2, peroxisomal; cysteine oxidation, fatty
acid metabolism, oxylipin biosynthesis, plant lipid
metabolism; 1.50A {Arabidopsis thaliana} PDB: 2c7y_A
2c7z_A 2wua_A
Length = 442
Score = 31.8 bits (73), Expect = 0.020
Identities = 11/36 (30%), Positives = 16/36 (44%)
Query: 27 PCCTIDTACSSTLFGLHLAVGAIERGECDHAIIGGV 62
T++ CSS L + AI+ G D I G+
Sbjct: 110 AVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGL 145
>4ewg_A Beta-ketoacyl synthase; ssgcid, structural genomics, seattle
structural genomics CEN infectious disease, transferase;
2.25A {Burkholderia phymatum}
Length = 412
Score = 31.7 bits (73), Expect = 0.022
Identities = 12/44 (27%), Positives = 18/44 (40%), Gaps = 8/44 (18%)
Query: 22 FALAGPCCTIDTACSSTLFGLHLAVG----AIERGECDHAIIGG 61
+ L G +AC+S G A+G I G+ + GG
Sbjct: 155 WDLKGRIVPTSSACAS---GSQ-AIGYAYENIAMGKQTLMLAGG 194
>1xpm_A 3-hydroxy-3-methylglutaryl COA synthase; HMG-COA synthase, HMGS,
coenzyme A, thiolase fold, condensing enzyme; HET: HMG
CAA; 1.60A {Staphylococcus aureus subsp} SCOP: c.95.1.2
c.95.1.2 PDB: 1xpl_A* 1xpk_A* 1tvz_A 1txt_A*
Length = 396
Score = 31.3 bits (71), Expect = 0.032
Identities = 10/66 (15%), Positives = 22/66 (33%), Gaps = 7/66 (10%)
Query: 4 FVLVAPSTP-RAAKSNSPI----FALAGPCCTIDT--ACSSTLFGLHLAVGAIERGECDH 56
V+VA + AAK+ + + + AC + + LA + +
Sbjct: 73 MVIVATESAVDAAKAAAVQIHNLLGIQPFARCFEMKEACYAATPAIQLAKDYLATRPNEK 132
Query: 57 AIIGGV 62
++
Sbjct: 133 VLVIAT 138
>1ulq_A Putative acetyl-COA acetyltransferase; structural genomics, riken
structural genomics/proteomics initiative, RSGI; 3.00A
{Thermus thermophilus} SCOP: c.95.1.1 c.95.1.1
Length = 401
Score = 30.9 bits (71), Expect = 0.042
Identities = 16/44 (36%), Positives = 19/44 (43%), Gaps = 5/44 (11%)
Query: 24 LAG-----PCCTIDTACSSTLFGLHLAVGAIERGECDHAIIGGV 62
LAG CT++ C S L + A AI GE I GV
Sbjct: 73 LAGFPVEVAGCTVNRLCGSGLEAVAQAARAIWAGEGKVYIGSGV 116
>3led_A 3-oxoacyl-acyl carrier protein synthase III; structural genomics,
PSI-2, protein structure initiative; HET: MSE; 1.45A
{Rhodopseudomonas palustris}
Length = 392
Score = 30.7 bits (70), Expect = 0.052
Identities = 10/28 (35%), Positives = 13/28 (46%), Gaps = 1/28 (3%)
Query: 34 ACSSTLFGLHLAVGAIERGECDHA-IIG 60
ACSS FGL A + G D ++
Sbjct: 176 ACSSATFGLKTAADFVGGGSVDAVLMVN 203
>2iik_A 3-ketoacyl-COA thiolase, peroxisomal; fatty acid metabolism,
structural genomics, structural genom consortium, SGC,
transferase; 2.55A {Homo sapiens}
Length = 418
Score = 30.6 bits (70), Expect = 0.059
Identities = 12/36 (33%), Positives = 16/36 (44%)
Query: 27 PCCTIDTACSSTLFGLHLAVGAIERGECDHAIIGGV 62
P T++ CSS L + G I G D + GV
Sbjct: 109 PLSTVNRQCSSGLQAVASIAGGIRNGSYDIGMACGV 144
>1afw_A 3-ketoacetyl-COA thiolase; fatty acid metabolism; 1.80A
{Saccharomyces cerevisiae} SCOP: c.95.1.1 c.95.1.1 PDB:
1pxt_A
Length = 393
Score = 29.8 bits (68), Expect = 0.10
Identities = 10/36 (27%), Positives = 17/36 (47%)
Query: 27 PCCTIDTACSSTLFGLHLAVGAIERGECDHAIIGGV 62
P ++ CSS L ++ I+ G+ D + GV
Sbjct: 93 PFVALNRQCSSGLTAVNDIANKIKVGQIDIGLALGV 128
>2vba_A 3-oxoacyl-[acyl-carrier-protein] synthase 1; cytoplasm, antibiotic,
transferase, amino-thiazole, acyltransferase, lipid
synthesis; HET: P4T; 1.36A {Escherichia coli} SCOP:
c.95.1.1 c.95.1.1 PDB: 1fj4_A* 1g5x_A 2aq7_A* 1fj8_A*
2aqb_A 2bui_A 2buh_A 2vb7_A* 2vb8_A 2vb9_A* 1h4f_A
1dd8_A 2cdh_A 2bz4_A 2byz_A 2bz3_A* 2byy_A* 1f91_A*
2cf2_A 2byw_A ...
Length = 406
Score = 29.8 bits (68), Expect = 0.11
Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 6/43 (13%)
Query: 22 FALAGPCCTIDTACSSTLFGLH---LAVGAIERGECDHAIIGG 61
F + G +I +AC++ H AV I+ G+ D GG
Sbjct: 150 FKIHGVNYSISSACAT---SAHCIGNAVEQIQLGKQDIVFAGG 189
>3mqd_A Beta-ketoacyl synthase; ssgcid, ALS collaborative crystallography,
beta-ketoacyl SYN brucella melitensis, fragments of
LIFE; HET: 3MQ; 1.25A {Brucella melitensis biovar
abortus} PDB: 3lrf_A* 3u0e_A* 3u0f_A*
Length = 428
Score = 29.8 bits (68), Expect = 0.11
Identities = 12/43 (27%), Positives = 19/43 (44%), Gaps = 6/43 (13%)
Query: 22 FALAGPCCTIDTACSSTLFGLH---LAVGAIERGECDHAIIGG 61
F + G +I +AC++ H A I+ G+ D GG
Sbjct: 169 FKIKGINYSISSACAT---SNHCIGNAYEMIQYGKQDRMFAGG 208
>4e1l_A Acetoacetyl-COA thiolase 2; 3-layer(ABA) sandwich, transferase;
2.00A {Clostridium difficile}
Length = 395
Score = 27.0 bits (61), Expect = 0.82
Identities = 14/36 (38%), Positives = 18/36 (50%)
Query: 27 PCCTIDTACSSTLFGLHLAVGAIERGECDHAIIGGV 62
P T++ C S L + LA +I GE D I GG
Sbjct: 83 PSYTVNKLCGSGLKSVQLAAQSITSGENDVVIAGGT 118
>3s21_A 3-oxoacyl-[ACP] synthase III; non-decarboxylative claisen
condensation reaction, transfera; HET: CER; 1.70A
{Xanthomonas campestris PV} PDB: 3s23_A* 3row_A 3s1z_A
3s20_A* 3fk5_A
Length = 345
Score = 27.2 bits (61), Expect = 0.85
Identities = 11/29 (37%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Query: 34 ACSSTLFGLHLAVGAIERGECDHA-IIGG 61
AC + + G+ +A +ERGE D+A ++ G
Sbjct: 129 ACLAFINGMDIAARMLERGEIDYALVVDG 157
>1tqy_B Actinorhodin polyketide putative beta-ketoacyl SY;
alpha-beta-alpha-beta-alpha, heterodimer, transferase;
2.00A {Streptomyces coelicolor} SCOP: c.95.1.1 c.95.1.1
Length = 415
Score = 26.7 bits (60), Expect = 1.1
Identities = 12/45 (26%), Positives = 17/45 (37%), Gaps = 9/45 (20%)
Query: 22 FALAGPCCTIDTACSSTLFGLHLAVG----AIERGECDHAIIGGV 62
+ GP + + GL A+G I RG + GGV
Sbjct: 156 HGMRGPSSALVAEQAG---GLD-ALGHARRTIRRG-TPLVVSGGV 195
>3ss6_A Acetyl-COA acetyltransferase; structural genomics, csgid, center
for structural genomics O infectious diseases, alpha
beta; HET: CSO; 1.70A {Bacillus anthracis}
Length = 394
Score = 26.6 bits (60), Expect = 1.2
Identities = 11/36 (30%), Positives = 16/36 (44%)
Query: 27 PCCTIDTACSSTLFGLHLAVGAIERGECDHAIIGGV 62
TI CSS + + A I+ G + + GGV
Sbjct: 83 TGYTIQRQCSSGMQAIMSAAMQIQLGVSEVVVAGGV 118
>4dd5_A Acetyl-COA acetyltransferase; structural genomics, center for
structural genomics of infec diseases, csgid, thiolase;
1.25A {Clostridium difficile}
Length = 396
Score = 26.6 bits (60), Expect = 1.3
Identities = 12/36 (33%), Positives = 18/36 (50%)
Query: 27 PCCTIDTACSSTLFGLHLAVGAIERGECDHAIIGGV 62
P TI+ C S L + +A I G+ D ++GG
Sbjct: 85 PAMTINIVCGSGLRSVSMASQLIALGDADIMLVGGA 120
>3mwb_A Prephenate dehydratase; L-Phe, PSI, MCSG, structural genomics,
midwest center for ST genomics, protein structure
initiative, lyase; HET: MSE PHE; 2.00A {Arthrobacter
aurescens}
Length = 313
Score = 26.4 bits (59), Expect = 1.4
Identities = 13/47 (27%), Positives = 19/47 (40%), Gaps = 18/47 (38%)
Query: 27 PCCTIDTACSSTLFGLHLAVGAIERGECDHAII-------GGVNLTL 66
PC ++TA + + GE D A++ GGV TL
Sbjct: 36 PCTNVNTA-----------LERVRAGEADAAMVPIENSVEGGVTATL 71
>1zow_A 3-oxoacyl-[acyl-carrier-protein] synthase III; FABH, fatty acid
biosynthesis, transferase; 2.00A {Staphylococcus aureus
subsp} PDB: 3il7_A
Length = 313
Score = 25.9 bits (58), Expect = 2.5
Identities = 6/28 (21%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Query: 34 ACSSTLFGLHLAVGAIERGECDHA-IIG 60
ACS ++ + A ++ G+ + ++G
Sbjct: 111 ACSGFMYSMITAKQYVQSGDYHNILVVG 138
>3bh1_A UPF0371 protein DIP2346; structural genomics, unknown function,
protein structure INI PSI-2; 2.51A {Corynebacterium
diphtheriae nctc 13129ORGANISM_TAXID}
Length = 507
Score = 25.8 bits (57), Expect = 2.7
Identities = 9/35 (25%), Positives = 16/35 (45%)
Query: 7 VAPSTPRAAKSNSPIFALAGPCCTIDTACSSTLFG 41
V P+ +++ P A+ +I T +S L G
Sbjct: 349 VEPARQVEERTSLPGCAIELVDGSIITGATSDLLG 383
>3i7a_A Putative metal-dependent phosphohydrolase; YP_926882.1, STRU
genomics, joint center for structural genomics, JCSG;
2.06A {Shewanella amazonensis SB2B}
Length = 281
Score = 25.9 bits (57), Expect = 2.7
Identities = 8/25 (32%), Positives = 13/25 (52%), Gaps = 2/25 (8%)
Query: 18 NSPIFALAGPCCTIDTACSSTLFGL 42
NS +++ P I++A T GL
Sbjct: 66 NSALYSRGVPAENINSAV--TRIGL 88
>1ub7_A 3-oxoacyl-[acyl-carrier protein] synthase; fatty acid synthesis,
beta-ketoacyl-ACP synthase III, FABH; 2.30A {Thermus
thermophilus} SCOP: c.95.1.2 c.95.1.2
Length = 322
Score = 25.5 bits (57), Expect = 2.9
Identities = 6/28 (21%), Positives = 10/28 (35%), Gaps = 1/28 (3%)
Query: 34 ACSSTLFGLHLAVGAIERGECDHA-IIG 60
C ++ L A +E G +G
Sbjct: 109 GCPGWIYALAQAHALVEAGLAQKVLAVG 136
>2vu1_A Acetyl-COA acetyltransferase; acyltransferase, PHB biosynthesis,
thiolase FOL; HET: CSO OPI; 1.51A {Zoogloea ramigera}
PDB: 1nl7_A* 1ou6_A* 2vu0_A* 1m4s_A* 2vu2_A* 2wkv_A*
2wku_A* 1m1t_A 1m3k_A 1m1o_A 1m3z_A* 2vtz_A* 2wl5_A*
2wkt_A* 2wl4_A* 1m4t_A* 2wl6_A 1qfl_A* 1dlv_A* 1dlu_A*
...
Length = 392
Score = 25.5 bits (57), Expect = 3.0
Identities = 8/36 (22%), Positives = 15/36 (41%)
Query: 27 PCCTIDTACSSTLFGLHLAVGAIERGECDHAIIGGV 62
++ C S L + L + I G+ + GG+
Sbjct: 81 TAWGMNQLCGSGLRAVALGMQQIATGDASIIVAGGM 116
>1vqr_A Hypothetical protein CJ0248; HD-domain/pdease-like fold, structural
genomics, joint cente structural genomics, JCSG; 2.25A
{Campylobacter jejuni subsp} SCOP: a.211.1.3
Length = 297
Score = 25.5 bits (56), Expect = 3.7
Identities = 8/36 (22%), Positives = 15/36 (41%), Gaps = 6/36 (16%)
Query: 17 SNSPIFALAGPCCTIDTACSSTLFGL----HLAVGA 48
+NSP + TI+ TL G+ ++ +
Sbjct: 72 ANSPYYGFTREITTINQVI--TLLGVGNIINIVMAD 105
>1wl4_A Acetyl-coenzyme A acetyltransferase 2; thiolase fold; HET: COA;
1.55A {Homo sapiens} PDB: 1wl5_A
Length = 397
Score = 25.1 bits (56), Expect = 3.8
Identities = 11/35 (31%), Positives = 16/35 (45%)
Query: 27 PCCTIDTACSSTLFGLHLAVGAIERGECDHAIIGG 61
P + C S L + LAV +I G+ + GG
Sbjct: 84 PAWSCQMICGSGLKAVCLAVQSIGIGDSSIVVAGG 118
>3il6_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; FABH, fatty acid
biosynthesis, antibiotic, acyltransferase, cytoplasm,
lipid synthesis; HET: B83; 2.50A {Enterococcus faecalis}
PDB: 3il5_A* 3il4_A*
Length = 321
Score = 25.2 bits (56), Expect = 4.1
Identities = 8/28 (28%), Positives = 13/28 (46%), Gaps = 1/28 (3%)
Query: 34 ACSSTLFGLHLAVGAIERGECDHA-IIG 60
ACS ++ L +A + G +IG
Sbjct: 112 ACSGFVYALSMAEKLVLSGRYQTGLVIG 139
>2x3e_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; HED, transferase,
acyltransferase, lipid synthesis, multifun enzyme; 1.81A
{Pseudomonas aeruginosa}
Length = 331
Score = 25.2 bits (56), Expect = 4.6
Identities = 8/28 (28%), Positives = 13/28 (46%), Gaps = 1/28 (3%)
Query: 34 ACSSTLFGLHLAVGAIERGECDHA-IIG 60
A + ++GL I G D A ++G
Sbjct: 111 AATGFVYGLASVGSLISAGLADSALLVG 138
>3gwa_A 3-oxoacyl-(acyl-carrier-protein) synthase III; structural genomics,
synthetase; 1.60A {Burkholderia pseudomallei} PDB:
3gwe_A
Length = 365
Score = 24.8 bits (55), Expect = 5.7
Identities = 9/28 (32%), Positives = 14/28 (50%), Gaps = 1/28 (3%)
Query: 34 ACSSTLFGLHLAVGAIERGECDHA-IIG 60
CS ++GL LA G +E G ++
Sbjct: 141 GCSGYVYGLSLAKGLVETGAARCVLLLT 168
>2ib8_A Acetyl-COA acetyltransferase; thiolase fold, potassium ION,
chloride, beta-alpha-beta-ALPH alpha-beta-BETA topology;
HET: MES; 1.85A {Homo sapiens} PDB: 2ib7_A* 2ib9_A*
2ibu_A* 2ibw_A* 2iby_A* 2f2s_A*
Length = 395
Score = 24.8 bits (55), Expect = 5.9
Identities = 11/35 (31%), Positives = 19/35 (54%)
Query: 27 PCCTIDTACSSTLFGLHLAVGAIERGECDHAIIGG 61
PC TI+ C+S + + +A ++ G D + GG
Sbjct: 86 PCTTINKVCASGMKAIMMASQSLMCGHQDVMVAGG 120
>2r51_A Vacuolar protein sorting-associated protein 26B; retromer,
fibronectin III, arrestin domain, membrane,
phosphorylation, protein transport; 2.10A {Mus
musculus} PDB: 3lh9_A 3lh8_A 3lha_A
Length = 340
Score = 24.7 bits (53), Expect = 6.3
Identities = 10/43 (23%), Positives = 17/43 (39%)
Query: 54 CDHAIIGGVNLTLKPATSLMYHKYNMLSPTGTISPFDASGVGH 96
+ G V+L+LK + H+ + G I + G H
Sbjct: 46 DGETVSGKVSLSLKNPNKRLEHQGIKIEFIGQIELYYDRGNHH 88
>1mzj_A Beta-ketoacylsynthase III; beta-ketosynthase, aromatic polyketide,
biosynthetic engineering, catalytic triad, transferase;
HET: COA; 2.10A {Streptomyces SP} SCOP: c.95.1.2
c.95.1.2
Length = 339
Score = 24.8 bits (55), Expect = 6.4
Identities = 12/63 (19%), Positives = 22/63 (34%), Gaps = 7/63 (11%)
Query: 5 VLVAPSTPR------AAKSNSPIFALAGPCCTIDTACSSTLFGLHLAVGAIERGECDHA- 57
V+V+ T + + A + AC+ L +A A+E G H
Sbjct: 85 VVVSTMTNFVHTPPLSVAIAHELGADNAGGFDLSAACAGFCHALSIAADAVESGGSRHVL 144
Query: 58 IIG 60
++
Sbjct: 145 VVA 147
>1u6e_A 3-oxoacyl-[acyl-carrier-protein] synthase III; transferase; 1.85A
{Mycobacterium tuberculosis} SCOP: c.95.1.2 c.95.1.2
PDB: 1u6s_A* 1m1m_A 1hzp_A* 2qnx_A* 2qnz_A* 2qo1_A*
2qx1_A* 2qo0_A* 2qny_A* 2ahb_A 2aj9_A
Length = 335
Score = 24.8 bits (55), Expect = 6.4
Identities = 10/63 (15%), Positives = 19/63 (30%), Gaps = 7/63 (11%)
Query: 5 VLVAPSTPR------AAKSNSPIFALAGPCCTIDTACSSTLFGLHLAVGAIERGECDHA- 57
V+V +T A + + A + + + L A I G
Sbjct: 86 VIVTTNTHFLQTPPAAPMVAASLGAKGILGFDLSAGAAGFGYALGAAADMIRGGGAATML 145
Query: 58 IIG 60
++G
Sbjct: 146 VVG 148
>4efi_A 3-oxoacyl-(acyl-carrier protein) synthase; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; 1.35A {Burkholderia xenovorans}
Length = 354
Score = 24.4 bits (54), Expect = 6.9
Identities = 7/29 (24%), Positives = 10/29 (34%), Gaps = 1/29 (3%)
Query: 34 ACSSTLFGLHLAVGAIERGECDHA-IIGG 61
CS L L + I+ G + G
Sbjct: 127 GCSGYPQALWLGMNLIQTGAAKRVLLAVG 155
>3mem_A Putative signal transduction protein; structural genomics, joint
center for structural genomics, J protein structure
initiative, PSI-2; HET: MSE; 2.25A {Marinobacter
aquaeolei}
Length = 457
Score = 24.6 bits (53), Expect = 7.6
Identities = 7/22 (31%), Positives = 11/22 (50%)
Query: 18 NSPIFALAGPCCTIDTACSSTL 39
+S +A AG ++ A S L
Sbjct: 227 SSSFYAAAGRVHSVHDAVSRVL 248
>2ebd_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; FABH, aquifex VF5,
lipid metabolism, structural genomics; 2.10A {Aquifex
aeolicus}
Length = 309
Score = 24.4 bits (54), Expect = 7.7
Identities = 9/28 (32%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Query: 34 ACSSTLFGLHLAVGAIERGECDHA-IIG 60
ACS ++ L +A I+ G+ + +IG
Sbjct: 110 ACSGFIYALDIADSFIKSGKAKNVLVIG 137
>4dfe_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; ssgcid, seattle
structural genomics center for infectious DI
transferase; 2.35A {Burkholderia xenovorans}
Length = 333
Score = 24.4 bits (54), Expect = 8.0
Identities = 8/28 (28%), Positives = 12/28 (42%), Gaps = 1/28 (3%)
Query: 34 ACSSTLFGLHLAVGAIERGECDHA-IIG 60
CS + + A I G+ A +IG
Sbjct: 126 VCSGFAYAVATADSFIRSGQHRTALVIG 153
>1g5g_A Fusion protein; NDV, paramyxovirus; HET: NAG BMA; 3.30A {Newcastle
disease virus} SCOP: f.12.1.1 h.3.2.1 PDB: 3maw_A*
Length = 481
Score = 24.7 bits (53), Expect = 8.1
Identities = 11/46 (23%), Positives = 15/46 (32%), Gaps = 2/46 (4%)
Query: 49 IERGECDHAIIGGVNLTLKPATSLMYHK--YNMLSPTGTISPFDAS 92
I+R C+ + G+ L L Y K S D S
Sbjct: 388 IDRQSCNILSLDGITLRLSGEFDATYQKNISIQDSQVIVTGNLDIS 433
>3m1t_A Putative phosphohydrolase; structural genomics, joint center
structural genomics, JCSG, protein structure
initiative, PS hydrolase; HET: MSE GOL; 1.62A
{Shewanella amazonensis}
Length = 275
Score = 24.2 bits (53), Expect = 9.3
Identities = 8/25 (32%), Positives = 10/25 (40%), Gaps = 2/25 (8%)
Query: 18 NSPIFALAGPCCTIDTACSSTLFGL 42
NS F + TID A G+
Sbjct: 57 NSARFGCSREVGTIDDAV--VRLGM 79
>3s3l_A CERJ; acyltransferase, FABH homologue, KS III homologue, dimethyl
transfer, transferase; 2.00A {Streptomyces tendae} PDB:
3t5y_A* 3t6s_A* 3t8e_A 3t5y_B*
Length = 357
Score = 24.1 bits (53), Expect = 9.8
Identities = 5/32 (15%), Positives = 10/32 (31%)
Query: 26 GPCCTIDTACSSTLFGLHLAVGAIERGECDHA 57
P + C+ + + LA + G
Sbjct: 107 VPAFGLAQRCNGGMGAIELAGAYLGSGIGAGH 138
>2j66_A BTRK, decarboxylase; butirosin, AHBA biosynthesis, lyase; HET: PLP;
1.65A {Bacillus circulans}
Length = 428
Score = 24.1 bits (53), Expect = 10.0
Identities = 10/47 (21%), Positives = 16/47 (34%), Gaps = 5/47 (10%)
Query: 7 VAPSTPRAAKSNSPIFALAGPCCTIDTACSSTLFGLHLAVGAIERGE 53
P + + +AGP CT G + V A+ G+
Sbjct: 324 YIPVREDSGRRELEKVTIAGPLCT-----PEDCLGKDVHVPALYPGD 365
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.134 0.415
Gapped
Lambda K H
0.267 0.0839 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,449,611
Number of extensions: 73539
Number of successful extensions: 185
Number of sequences better than 10.0: 1
Number of HSP's gapped: 171
Number of HSP's successfully gapped: 66
Length of query: 99
Length of database: 6,701,793
Length adjustment: 65
Effective length of query: 34
Effective length of database: 4,886,928
Effective search space: 166155552
Effective search space used: 166155552
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.2 bits)