RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy11966
(99 letters)
>d1j3na1 c.95.1.1 (A:1-249) Beta-ketoacyl-ACP synthase II {Thermus
thermophilus [TaxId: 274]}
Length = 249
Score = 63.6 bits (154), Expect = 3e-14
Identities = 22/79 (27%), Positives = 31/79 (39%), Gaps = 5/79 (6%)
Query: 22 FALAGPCCTIDTACSSTLFGLHLAVGAIERGECDHAIIGGVNLTLKPATSLMYHKYNMLS 81
+ GP T+ TAC++ L A+ I+ GE D + GG + P + LS
Sbjct: 148 YGFTGPSSTVVTACATGADALGSALRMIQLGEADLVLAGGTEAAITPMAIGAFAVMRALS 207
Query: 82 -----PTGTISPFDASGVG 95
P PF S G
Sbjct: 208 TRNEEPEKASRPFTLSRDG 226
>d1tqya1 c.95.1.1 (A:3-218) Actinorhodin polyketide putative
beta-ketoacyl synthase 1, KasA {Streptomyces coelicolor
[TaxId: 1902]}
Length = 216
Score = 53.9 bits (128), Expect = 9e-11
Identities = 14/56 (25%), Positives = 21/56 (37%)
Query: 27 PCCTIDTACSSTLFGLHLAVGAIERGECDHAIIGGVNLTLKPATSLMYHKYNMLSP 82
P + T C+S L + AV AIE G D G + + P + +
Sbjct: 159 PVTMVSTGCTSGLDSVGNAVRAIEEGSADVMFAGAADTPITPIVVACFDAIRATTA 214
>d2ix4a1 c.95.1.1 (A:31-300) Beta-ketoacyl-ACP synthase II {Thale
cress (Arabidopsis thaliana), mitochondrial isoform
[TaxId: 3702]}
Length = 270
Score = 51.6 bits (122), Expect = 7e-10
Identities = 18/80 (22%), Positives = 30/80 (37%), Gaps = 6/80 (7%)
Query: 22 FALAGPCCTIDTACSSTLFGLHLAVGAIERGECDHAIIGGVNLTLKPATSLMYHKYNMLS 81
+ GP TAC++ + A I+ G+ D + GG ++ + + + LS
Sbjct: 166 YGFQGPNHAAVTACATGAHSIGDATRMIQFGDADVMVAGGTESSIDALSVAGFSRSRALS 225
Query: 82 ------PTGTISPFDASGVG 95
P PFD G
Sbjct: 226 TKFNSSPQEASRPFDCDRDG 245
>d2gfva1 c.95.1.1 (A:2-251) Beta-ketoacyl-ACP synthase II
{Escherichia coli [TaxId: 562]}
Length = 250
Score = 49.1 bits (116), Expect = 6e-09
Identities = 20/79 (25%), Positives = 29/79 (36%), Gaps = 5/79 (6%)
Query: 22 FALAGPCCTIDTACSSTLFGLHLAVGAIERGECDHAIIGGVNLTLKPATSLMYHKYNMLS 81
+ L GP +I TA +S + + A I G+ D + GG P + LS
Sbjct: 149 YGLRGPSISIATAQTSGVHNIGHAARIIAYGDADVMVAGGAEKASTPLGVGGFGAARALS 208
Query: 82 -----PTGTISPFDASGVG 95
P P+D G
Sbjct: 209 TRNDNPQAASRPWDKERDG 227
>d1ox0a1 c.95.1.1 (A:-5-251) Beta-ketoacyl-ACP synthase II
{Streptococcus pneumoniae [TaxId: 1313]}
Length = 256
Score = 48.0 bits (113), Expect = 1e-08
Identities = 24/78 (30%), Positives = 35/78 (44%), Gaps = 4/78 (5%)
Query: 22 FALAGPCCTIDTACSSTLFGLHLAVGAIERGECDHAIIGGVNLTLKPATSLMYHKYNMLS 81
F G C +I+TACSS+ + A +I+ G D ++GG ++ P + LS
Sbjct: 156 FGANGVCKSINTACSSSNDAIGDAFRSIKFGFQDVMLVGGTEASITPFAIAGFQALTALS 215
Query: 82 ----PTGTISPFDASGVG 95
PT PFD G
Sbjct: 216 TTEDPTRASIPFDKDRNG 233
>d1tqyb1 c.95.1.1 (B:2-209) Actinorhodin polyketide putative
beta-ketoacyl synthase 2, KasB {Streptomyces coelicolor
[TaxId: 1902]}
Length = 208
Score = 47.8 bits (112), Expect = 2e-08
Identities = 13/55 (23%), Positives = 19/55 (34%), Gaps = 1/55 (1%)
Query: 27 PCCTIDTACSSTLFGLHLAVGAIERGECDHAIIGGVNLTLKPATSLMYHKYNMLS 81
P + + L L A I RG + GGV+ L P + +S
Sbjct: 152 PSSALVAEQAGGLDALGHARRTIRRG-TPLVVSGGVDSALDPWGWVSQIASGRIS 205
>d1e5ma1 c.95.1.1 (A:6-255) Beta-ketoacyl-ACP synthase II
{Synechocystis sp. [TaxId: 1143]}
Length = 250
Score = 46.5 bits (109), Expect = 5e-08
Identities = 18/75 (24%), Positives = 26/75 (34%), Gaps = 5/75 (6%)
Query: 26 GPCCTIDTACSSTLFGLHLAVGAIERGECDHAIIGGVNLTLKPATSLMYHKYNMLS---- 81
GP TAC++ + A ++ G I GG + P + + LS
Sbjct: 153 GPNNCTVTACAAGSNAIGDAFRLVQNGYAKAMICGGTEAAITPLSYAGFASARALSFRND 212
Query: 82 -PTGTISPFDASGVG 95
P PFD G
Sbjct: 213 DPLHASRPFDKDRDG 227
>d2vbaa1 c.95.1.1 (A:1-253) Beta-ketoacyl-ACP synthase I
{Escherichia coli [TaxId: 562]}
Length = 253
Score = 38.8 bits (89), Expect = 3e-05
Identities = 16/82 (19%), Positives = 28/82 (34%), Gaps = 5/82 (6%)
Query: 19 SPIFALAGPCCTIDTACSSTLFGLHLAVGAIERGECDHAIIGGVNLTLKPATSLMYH--- 75
+ F + G +I +AC+++ + AV I+ G+ D GG
Sbjct: 147 ATPFKIHGVNYSISSACATSAHCIGNAVEQIQLGKQDIVFAGGGEELCWEMACEFDAMGA 206
Query: 76 --KYNMLSPTGTISPFDASGVG 95
+P +DA G
Sbjct: 207 LSTKYNDTPEKASRTYDAHRDG 228
>d1u7ba1 d.131.1.2 (A:1-126) Proliferating cell nuclear antigen
(PCNA) {Human (Homo sapiens) [TaxId: 9606]}
Length = 126
Score = 24.4 bits (53), Expect = 2.1
Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 30 TIDTACSSTLFGLHLAVGAIERGECDHAIIGGVNLT 65
++D++ S L L L + CD + GVNLT
Sbjct: 39 SMDSSHVS-LVQLTLRSEGFDTYRCDRNLAMGVNLT 73
>d1plqa1 d.131.1.2 (A:1-126) Proliferating cell nuclear antigen
(PCNA) {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 126
Score = 24.0 bits (52), Expect = 3.0
Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 30 TIDTACSSTLFGLHLAVGAIERGECDHAIIGGVNLT 65
+D + L L + V A + CDH + G++LT
Sbjct: 39 AVDDSRVL-LVSLEIGVEAFQEYRCDHPVTLGMDLT 73
>d1iz5a1 d.131.1.2 (A:2-120) Proliferating cell nuclear antigen
(PCNA) {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Length = 119
Score = 23.6 bits (51), Expect = 3.7
Identities = 9/36 (25%), Positives = 13/36 (36%), Gaps = 1/36 (2%)
Query: 30 TIDTACSSTLFGLHLAVGAIERGECDHAIIGGVNLT 65
+D + L L+L + E GVNL
Sbjct: 39 AMDPSRVV-LIDLNLPSSIFSKYEVVEPETIGVNLD 73
>d1rwza1 d.131.1.2 (A:1-122) Proliferating cell nuclear antigen
(PCNA) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 122
Score = 23.5 bits (51), Expect = 4.0
Identities = 6/36 (16%), Positives = 14/36 (38%), Gaps = 1/36 (2%)
Query: 30 TIDTACSSTLFGLHLAVGAIERGECDHAIIGGVNLT 65
+D A + + + + + E D GV++
Sbjct: 38 AVDPANVA-MVIVDIPKDSFEVYNIDEEKTIGVDMD 72
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.134 0.415
Gapped
Lambda K H
0.267 0.0434 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 344,955
Number of extensions: 12850
Number of successful extensions: 27
Number of sequences better than 10.0: 1
Number of HSP's gapped: 24
Number of HSP's successfully gapped: 12
Length of query: 99
Length of database: 2,407,596
Length adjustment: 61
Effective length of query: 38
Effective length of database: 1,570,066
Effective search space: 59662508
Effective search space used: 59662508
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.6 bits)