Query psy11967
Match_columns 539
No_of_seqs 385 out of 1306
Neff 5.3
Searched_HMMs 46136
Date Fri Aug 16 23:32:34 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11967.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11967hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 smart00276 GLECT Galectin. Gal 100.0 7.6E-32 1.6E-36 244.2 15.8 125 106-235 2-127 (128)
2 PF00337 Gal-bind_lectin: Gala 100.0 1.3E-31 2.9E-36 242.5 16.9 130 104-235 1-133 (133)
3 cd00070 GLECT Galectin/galacto 100.0 1.1E-30 2.3E-35 236.0 14.5 126 104-234 1-127 (127)
4 KOG3587|consensus 100.0 4.4E-28 9.6E-33 224.4 14.6 133 103-237 4-140 (143)
5 PLN03133 beta-1,3-galactosyltr 99.9 8.3E-25 1.8E-29 241.8 15.6 134 104-237 163-358 (636)
6 smart00276 GLECT Galectin. Gal 99.9 1.9E-22 4.1E-27 182.8 11.6 90 442-536 3-93 (128)
7 cd00070 GLECT Galectin/galacto 99.9 1.2E-21 2.5E-26 177.1 11.2 91 441-536 3-94 (127)
8 PF00337 Gal-bind_lectin: Gala 99.9 1.4E-21 3E-26 177.1 11.4 96 439-536 1-99 (133)
9 KOG3587|consensus 99.8 4.9E-19 1.1E-23 164.2 10.6 93 442-536 8-104 (143)
10 PLN03133 beta-1,3-galactosyltr 99.7 7.5E-17 1.6E-21 179.0 11.3 95 442-536 166-320 (636)
11 KOG1202|consensus 99.7 3.2E-17 6.9E-22 185.7 4.1 90 332-421 1988-2077(2376)
12 PF00550 PP-binding: Phosphopa 98.8 1.4E-08 3.1E-13 80.8 6.2 63 353-416 3-66 (67)
13 PRK00982 acpP acyl carrier pro 98.6 3.9E-08 8.5E-13 81.4 4.8 67 352-419 7-75 (78)
14 TIGR00517 acyl_carrier acyl ca 98.4 5.8E-07 1.3E-11 74.4 5.3 67 352-419 7-75 (77)
15 PRK05883 acyl carrier protein; 98.3 1.1E-06 2.3E-11 76.1 5.5 67 352-419 18-86 (91)
16 CHL00124 acpP acyl carrier pro 98.3 8.6E-07 1.9E-11 74.2 4.7 66 352-418 9-76 (82)
17 PRK05350 acyl carrier protein; 98.3 1.1E-06 2.3E-11 74.1 5.2 66 352-418 10-77 (82)
18 PRK08172 putative acyl carrier 98.2 2.2E-06 4.8E-11 72.8 5.5 66 353-419 9-76 (82)
19 PRK12449 acyl carrier protein; 98.2 3.5E-06 7.6E-11 70.2 6.0 65 353-418 10-76 (80)
20 PRK07117 acyl carrier protein; 98.1 4.7E-06 1E-10 70.4 4.9 64 353-417 10-75 (79)
21 PRK05828 acyl carrier protein; 98.0 1.1E-05 2.4E-10 68.9 5.7 56 361-417 19-75 (84)
22 PRK07639 acyl carrier protein; 98.0 1.4E-05 3E-10 68.4 5.9 68 352-419 9-80 (86)
23 COG0236 AcpP Acyl carrier prot 98.0 1.2E-05 2.6E-10 67.4 5.2 67 352-419 9-77 (80)
24 PRK07081 acyl carrier protein; 97.9 1.3E-05 2.7E-10 68.2 4.6 65 353-417 5-73 (83)
25 PTZ00171 acyl carrier protein; 97.9 2.3E-05 5E-10 73.7 5.7 67 352-419 74-142 (148)
26 PRK09184 acyl carrier protein; 97.8 2E-05 4.4E-10 68.0 4.7 68 352-419 10-85 (89)
27 PRK06060 acyl-CoA synthetase; 97.8 1.7E-05 3.8E-10 89.7 3.8 66 353-418 550-616 (705)
28 smart00823 PKS_PP Phosphopante 97.7 5.9E-05 1.3E-09 60.3 5.7 67 352-418 16-83 (86)
29 PRK06508 acyl carrier protein; 97.6 9.4E-05 2E-09 64.5 4.9 55 352-407 7-62 (93)
30 PRK05087 D-alanine--poly(phosp 97.4 0.00019 4.1E-09 60.6 4.5 63 353-416 7-70 (78)
31 TIGR03443 alpha_am_amid L-amin 96.6 0.0027 5.8E-08 77.5 5.8 64 353-417 853-917 (1389)
32 KOG1748|consensus 96.4 0.0021 4.6E-08 59.2 2.8 63 356-419 61-125 (131)
33 TIGR01688 dltC D-alanine--poly 96.4 0.0045 9.7E-08 51.8 4.1 63 353-416 4-67 (73)
34 PRK10252 entF enterobactin syn 96.0 0.0087 1.9E-07 72.2 6.2 67 352-421 982-1049(1296)
35 PRK12467 peptide synthase; Pro 94.2 0.063 1.4E-06 72.7 6.1 65 352-419 3609-3674(3956)
36 PRK05691 peptide synthase; Val 93.9 0.061 1.3E-06 73.3 5.3 63 352-417 590-653 (4334)
37 PRK12316 peptide synthase; Pro 93.3 0.1 2.3E-06 72.1 6.0 65 352-419 5076-5141(5163)
38 PRK12316 peptide synthase; Pro 92.8 0.13 2.8E-06 71.3 5.6 65 352-419 2520-2585(5163)
39 PRK12467 peptide synthase; Pro 92.4 0.16 3.4E-06 69.0 5.7 67 351-420 1033-1100(3956)
40 PRK05691 peptide synthase; Val 91.9 0.2 4.3E-06 68.6 5.8 65 352-419 4245-4310(4334)
41 COG3433 Aryl carrier domain [S 86.4 1.4 3E-05 37.1 4.7 67 352-420 2-69 (74)
42 TIGR02813 omega_3_PfaA polyket 84.9 1.1 2.5E-05 58.8 5.4 66 353-419 1312-1381(2582)
43 PF14573 PP-binding_2: Acyl-ca 64.9 8.3 0.00018 33.8 3.6 43 374-416 40-83 (96)
44 PF08244 Glyco_hydro_32C: Glyc 55.8 64 0.0014 26.8 7.5 72 127-204 7-85 (86)
45 PF06439 DUF1080: Domain of Un 47.7 99 0.0021 28.7 8.2 58 178-235 121-184 (185)
46 PF07377 DUF1493: Protein of u 47.0 31 0.00067 30.8 4.4 43 365-407 23-66 (111)
47 TIGR02813 omega_3_PfaA polyket 44.5 28 0.00061 46.6 5.1 65 352-417 1413-1481(2582)
48 COG4518 Mu-like prophage FluMu 32.6 53 0.0012 29.8 3.5 42 380-421 54-98 (122)
49 PF08766 DEK_C: DEK C terminal 31.3 43 0.00093 26.0 2.4 36 352-401 4-39 (54)
50 smart00640 Glyco_32 Glycosyl h 28.2 2.9E+02 0.0064 30.2 9.1 72 129-204 361-436 (437)
51 PF14560 Ubiquitin_2: Ubiquiti 25.4 1.5E+02 0.0032 24.9 4.9 22 439-460 63-84 (87)
52 cd01789 Alp11_N Ubiquitin-like 24.3 2.1E+02 0.0046 24.1 5.7 63 392-459 15-81 (84)
53 KOG1178|consensus 23.0 62 0.0013 39.7 2.8 55 367-421 614-669 (1032)
54 PF00874 PRD: PRD domain; Int 22.0 85 0.0018 25.0 2.7 27 384-410 58-84 (89)
55 PF13592 HTH_33: Winged helix- 21.9 79 0.0017 25.0 2.4 24 384-407 6-29 (60)
56 smart00469 WIF Wnt-inhibitory 20.9 1.2E+02 0.0025 28.7 3.7 58 421-489 57-118 (136)
No 1
>smart00276 GLECT Galectin. Galectin - galactose-binding lectin
Probab=99.98 E-value=7.6e-32 Score=244.17 Aligned_cols=125 Identities=38% Similarity=0.583 Sum_probs=117.4
Q ss_pred eeecCCeeEEeeEEe-ecccCCCCceEEEEeccCCCCCCCeEEEEeeEeCCCEEEEeceeCCccCcceeecCCCCCCcCC
Q psy11967 106 EQKIRKEWTVEDVIN-TNDLSALVFRFAVNLVISGHDDDDIALHFNPRFDVNYCVRNSCRNKVWGEEEKAAYVSNPFKLG 184 (539)
Q Consensus 106 ~~~I~~~ltvgg~I~-~G~V~~~a~rFsINL~~g~~p~~DIaLHfNpRF~~~~IVrNS~~~G~WG~EEr~~~~~fPF~~G 184 (539)
..+|+.++++|..+. +|.+..+++||+|||+++. +||+|||||||++++|||||+.+|.||.|||.. .+||++|
T Consensus 2 ~~~lp~~l~~G~~i~i~G~~~~~~~~F~inl~~~~---~di~lH~n~rf~~~~iV~Ns~~~g~Wg~Eer~~--~~Pf~~g 76 (128)
T smart00276 2 TLPIPGGLKPGQTLTVRGIVLPDAKRFSINLLTGG---DDIALHFNPRFNENKIVCNSKLNGSWGSEEREG--GFPFQPG 76 (128)
T ss_pred cccCCCCCCCCCEEEEEEEECCCCCEEEEEeecCC---CCEEEEEeccCCCCEEEEeCccCCccchheEcC--CCCCCCC
Confidence 455667788888875 8888999999999999986 599999999999999999999999999999997 7999999
Q ss_pred CeEEEEEEEcCcEEEEEECCEEeEEecCCCCCCCeeEEEEecceEEEEEEE
Q psy11967 185 ENFVLEIFCAPSEFMFAVNGTHFCSFPYRYPLYTITRLQILPRVDIFKIQT 235 (539)
Q Consensus 185 ~~F~I~I~~~~~~F~I~VNG~h~~~F~hRlpl~~I~~L~V~GDV~v~sV~~ 235 (539)
++|+|+|++++++|+|+|||+|+++|.||+|+++|++|.|.||+++++|++
T Consensus 77 ~~F~l~i~~~~~~f~i~vng~~~~~f~~R~~~~~i~~l~v~Gdv~l~~v~~ 127 (128)
T smart00276 77 QPFDLTIIVQPDHFQIFVNGVHITTFPHRLPLESIDYLSINGDVQLTSVSF 127 (128)
T ss_pred CEEEEEEEEcCCEEEEEECCEeEEEecCCCCcccEeEEEEeCCEEEEEEEE
Confidence 999999999999999999999999999999999999999999999999987
No 2
>PF00337 Gal-bind_lectin: Galactoside-binding lectin; InterPro: IPR001079 Galectins (also known as galaptins or S-lectin) are a family of proteins defined by having at least one characteristic carbohydrate recognition domain (CRD) with an affinity for beta-galactosides and sharing certain sequence elements. Members of the galectins family are found in mammals, birds, amphibians, fish, nematodes, sponges, and some fungi. Galectins are known to carry out intra- and extracellular functions through glycoconjugate-mediated recogntion. From the cytosol they may be secreted by non-classical pathways, but they may also be targeted to the nucleus or specific sub-cytosolic sites. Within the same peptide chain some galectins have a CRD with only a few additional amino acids, whereas others have two CRDs joined by a link peptide, and one (galectin-3) has one CRD joined to a different type of domain [, ]. The galectin carbohydrate recognition domain (CRD) is a beta-sandwich of about 135 amino acid. The two sheets are slightly bent with 6 strands forming the concave side and 5 strands forming the convex side. The concave side forms a groove in which carbohydrate is bound, and which is long enough to hold about a linear tetrasaccharide [, ].; GO: 0005529 sugar binding; PDB: 2WSU_B 2WT0_A 2WT1_A 2WT2_B 2WSV_A 1HLC_A 2ZGQ_A 3M3Q_B 1WW5_C 3M3E_A ....
Probab=99.98 E-value=1.3e-31 Score=242.52 Aligned_cols=130 Identities=41% Similarity=0.636 Sum_probs=121.6
Q ss_pred eeeeecCCeeEEeeEEe-ecccCCCCceEEEEeccCC-CCCCCeEEEEeeEeCC-CEEEEeceeCCccCcceeecCCCCC
Q psy11967 104 WSEQKIRKEWTVEDVIN-TNDLSALVFRFAVNLVISG-HDDDDIALHFNPRFDV-NYCVRNSCRNKVWGEEEKAAYVSNP 180 (539)
Q Consensus 104 P~~~~I~~~ltvgg~I~-~G~V~~~a~rFsINL~~g~-~p~~DIaLHfNpRF~~-~~IVrNS~~~G~WG~EEr~~~~~fP 180 (539)
||.+.+++++++|..+. +|++.++++||+|||+++. .+.+||+|||||||++ +.||+||+.+|.||.|||.. .+|
T Consensus 1 pf~~~l~~~l~~G~~i~i~G~~~~~~~~f~inl~~~~~~~~~~i~lH~~~rf~~~~~iv~Ns~~~g~Wg~Ee~~~--~~p 78 (133)
T PF00337_consen 1 PFTARLPGGLSPGDSIIIRGTVPPDAKRFSINLQTGPNDPDDDIALHFNPRFDEQNVIVRNSRINGKWGQEERES--PFP 78 (133)
T ss_dssp SEEEEETTEEETTEEEEEEEEEBTTSSBEEEEEEES-STTTTEEEEEEEEECTTEEEEEEEEEETTEE-SEEEES--STS
T ss_pred CceEEcCCCCCCCcEEEEEEEECCCCCEEEEEecCCCcCCCCCEEEEEEEEeCCCceEEEeceECCEeccceeee--eee
Confidence 89999999999999986 9999999999999999992 2468999999999999 99999999999999999976 799
Q ss_pred CcCCCeEEEEEEEcCcEEEEEECCEEeEEecCCCCCCCeeEEEEecceEEEEEEE
Q psy11967 181 FKLGENFVLEIFCAPSEFMFAVNGTHFCSFPYRYPLYTITRLQILPRVDIFKIQT 235 (539)
Q Consensus 181 F~~G~~F~I~I~~~~~~F~I~VNG~h~~~F~hRlpl~~I~~L~V~GDV~v~sV~~ 235 (539)
|.+|++|+|+|++++++|+|+|||+|+++|.||+|+++|++|+|+|||+|++|++
T Consensus 79 f~~g~~F~i~I~~~~~~f~I~vng~~~~~F~~R~~~~~i~~l~i~Gdv~i~~v~~ 133 (133)
T PF00337_consen 79 FQPGQPFEIRIRVEEDGFKIYVNGKHFCSFPHRLPLSSIDYLQIQGDVQIYSVEF 133 (133)
T ss_dssp STTTSEEEEEEEEESSEEEEEETTEEEEEEE-SSCGGGEEEEEEEESEEEEEEEE
T ss_pred ecCCceEEEEEEEecCeeEEEECCeEEEEeeCcCCHHHcCEEEEECCEEEEEEEC
Confidence 9999999999999999999999999999999999999999999999999999986
No 3
>cd00070 GLECT Galectin/galactose-binding lectin. This domain exclusively binds beta-galactosides, such as lactose, and does not require metal ions for activity. GLECT domains occur as homodimers or tandemly repeated domains. They are developmentally regulated and may be involved in differentiation, cell-cell interaction and cellular regulation.
Probab=99.97 E-value=1.1e-30 Score=235.99 Aligned_cols=126 Identities=37% Similarity=0.574 Sum_probs=117.4
Q ss_pred eeeeecCCeeEEeeEEe-ecccCCCCceEEEEeccCCCCCCCeEEEEeeEeCCCEEEEeceeCCccCcceeecCCCCCCc
Q psy11967 104 WSEQKIRKEWTVEDVIN-TNDLSALVFRFAVNLVISGHDDDDIALHFNPRFDVNYCVRNSCRNKVWGEEEKAAYVSNPFK 182 (539)
Q Consensus 104 P~~~~I~~~ltvgg~I~-~G~V~~~a~rFsINL~~g~~p~~DIaLHfNpRF~~~~IVrNS~~~G~WG~EEr~~~~~fPF~ 182 (539)
||..+++..+.+|..+. +|.+..+++||+|||+++. +||+|||||||.+++|||||+.+|.||.|||.. .+||+
T Consensus 1 p~~~~l~~~l~~G~~i~i~G~~~~~~~~f~Inl~~~~---~~i~lH~n~rf~~~~IV~Ns~~~g~Wg~Eer~~--~~pf~ 75 (127)
T cd00070 1 PYKLPLPGGLKPGSTLTVKGRVLPNAKRFSINLGTGS---SDIALHFNPRFDENVIVRNSFLNGNWGPEERSG--GFPFQ 75 (127)
T ss_pred CcccccCCCCcCCCEEEEEEEECCCCCEEEEEEecCC---CCEEEEEeeeCCCCEEEEcCCCCCEecHhhccC--CCCCC
Confidence 56667777788888775 8888899999999999986 499999999999999999999999999999998 79999
Q ss_pred CCCeEEEEEEEcCcEEEEEECCEEeEEecCCCCCCCeeEEEEecceEEEEEE
Q psy11967 183 LGENFVLEIFCAPSEFMFAVNGTHFCSFPYRYPLYTITRLQILPRVDIFKIQ 234 (539)
Q Consensus 183 ~G~~F~I~I~~~~~~F~I~VNG~h~~~F~hRlpl~~I~~L~V~GDV~v~sV~ 234 (539)
+|++|+|+|++++++|+|+|||+|+++|.||+|+++|++|+|.||+++.+|.
T Consensus 76 ~g~~F~l~i~~~~~~f~i~vng~~~~~F~~R~~~~~i~~l~v~Gdv~i~~v~ 127 (127)
T cd00070 76 PGQPFELTILVEEDKFQIFVNGQHFFSFPHRLPLESIDYLSINGDVSLTSVE 127 (127)
T ss_pred CCCeEEEEEEEcCCEEEEEECCEeEEEecCcCChhhEEEEEEeCCEEEEEeC
Confidence 9999999999999999999999999999999999999999999999999873
No 4
>KOG3587|consensus
Probab=99.95 E-value=4.4e-28 Score=224.39 Aligned_cols=133 Identities=38% Similarity=0.522 Sum_probs=110.9
Q ss_pred eeeeeecCCeeEEeeEEe-ecccCCC-CceEEEEeccCCC--CCCCeEEEEeeEeCCCEEEEeceeCCccCcceeecCCC
Q psy11967 103 VWSEQKIRKEWTVEDVIN-TNDLSAL-VFRFAVNLVISGH--DDDDIALHFNPRFDVNYCVRNSCRNKVWGEEEKAAYVS 178 (539)
Q Consensus 103 vP~~~~I~~~ltvgg~I~-~G~V~~~-a~rFsINL~~g~~--p~~DIaLHfNpRF~~~~IVrNS~~~G~WG~EEr~~~~~ 178 (539)
+|+...+...+..|..+. +|.+..+ +++|.+++.++.+ +..||||||||||+++.|||||+.+|.||.|||.. .
T Consensus 4 ~p~~~~~~~~l~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~dia~Hfnprf~~~~VVrNs~~~g~Wg~eE~~~--~ 81 (143)
T KOG3587|consen 4 VPFPVPIPSGLPPGSQVTIKGLVLYGIPKRFAVNLRFGTNLDSDSDIALHFNPRFDEKGVVRNSLINGEWGLEEREG--G 81 (143)
T ss_pred cccccccccCcCCCcEEEEEEEEcccCCCcceeeeEeecccCCCCcEEEEEeccCCCCeEEEecccCCccCchhhcC--C
Confidence 344444444444444443 4444433 4677777766655 34579999999999999999999999999999988 8
Q ss_pred CCCcCCCeEEEEEEEcCcEEEEEECCEEeEEecCCCCCCCeeEEEEecceEEEEEEEee
Q psy11967 179 NPFKLGENFVLEIFCAPSEFMFAVNGTHFCSFPYRYPLYTITRLQILPRVDIFKIQTKL 237 (539)
Q Consensus 179 fPF~~G~~F~I~I~~~~~~F~I~VNG~h~~~F~hRlpl~~I~~L~V~GDV~v~sV~~~~ 237 (539)
+||++|++|+|+|++++++|+|+|||.|+++|.||+|++.|.+|+|.|||++.+|.+.+
T Consensus 82 ~PF~~g~~F~l~I~~~~~~~~I~VNg~~f~~y~HR~p~~~v~~l~i~Gdv~i~~i~~~~ 140 (143)
T KOG3587|consen 82 NPFQPGQPFDLTILVEEDKFQIFVNGVHFADYPHRIPPSSVQTLQINGDVQITSIEFSN 140 (143)
T ss_pred CCCCCCCeEEEEEEEccCeEEEEECCEEEEeecCCCCChheeEEEEeeeEEEEEEEEEc
Confidence 99999999999999999999999999999999999999999999999999999999976
No 5
>PLN03133 beta-1,3-galactosyltransferase; Provisional
Probab=99.92 E-value=8.3e-25 Score=241.81 Aligned_cols=134 Identities=25% Similarity=0.311 Sum_probs=113.4
Q ss_pred eeeeecCCeeEEeeEEe-ecccCCCCceEEEEeccCCC---CCCCeEEEEeeEeC------CCEEEEecee-CCccCcce
Q psy11967 104 WSEQKIRKEWTVEDVIN-TNDLSALVFRFAVNLVISGH---DDDDIALHFNPRFD------VNYCVRNSCR-NKVWGEEE 172 (539)
Q Consensus 104 P~~~~I~~~ltvgg~I~-~G~V~~~a~rFsINL~~g~~---p~~DIaLHfNpRF~------~~~IVrNS~~-~G~WG~EE 172 (539)
.|.+.|+.+|++|..|. .|.+..+++||+|||+++.. +.++|+|||||||+ +++||+||+. +++||.||
T Consensus 163 ~~~~~iP~GL~~Gs~ItI~G~p~~~~~~F~InL~g~~~~g~~~~~iaLHfNpRf~gd~~t~~~vIV~NT~~~~~~WG~EE 242 (636)
T PLN03133 163 GYKLKIPCGLTQGSSITIIGIPDGLLGNFRIDLTGEPLPGEPDPPIILHYNVRLLGDKITEDPVIVQNTWTAAHDWGEEE 242 (636)
T ss_pred ceEEecCCcCCCCCEEEEEEEeCCCCCeEEEEEeecCcCCCCCCCEEEEEcCccCCCccccCCEEEeCCCcCCCcccHhh
Confidence 34444444455555443 55556799999999998853 35799999999997 4789999997 99999999
Q ss_pred eec-------------------------------------------------CCCCCCcCCCeEEEEEEEcCcEEEEEEC
Q psy11967 173 KAA-------------------------------------------------YVSNPFKLGENFVLEIFCAPSEFMFAVN 203 (539)
Q Consensus 173 r~~-------------------------------------------------~~~fPF~~G~~F~I~I~~~~~~F~I~VN 203 (539)
|+. .|.|||++|++|+++|.++.++|+|+||
T Consensus 243 Rc~~~~~~~~~~vd~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fPF~~G~~F~lti~~g~egf~v~Vn 322 (636)
T PLN03133 243 RCPSPDPDKNKKVDDLDQCNKMVGRDDKRVLSTSLHSNGSRRSPMSQEATKARRYFPFKQGYLSVATLRVGTEGIQMTVD 322 (636)
T ss_pred hcCCCCccccccccchhhhhhhhcccccccccccccccccccccccccccccccCCCCCCCCcEEEEEEecCCEEEEEEC
Confidence 984 1259999999999999999999999999
Q ss_pred CEEeEEecCCCCCC--CeeEEEEecceEEEEEEEee
Q psy11967 204 GTHFCSFPYRYPLY--TITRLQILPRVDIFKIQTKL 237 (539)
Q Consensus 204 G~h~~~F~hRlpl~--~I~~L~V~GDV~v~sV~~~~ 237 (539)
|+|+++|+||.+++ .|++|.|.|||+|++|.+..
T Consensus 323 G~H~tsF~yR~~lep~~V~~l~V~GDv~l~SV~a~~ 358 (636)
T PLN03133 323 GKHITSFAYRETLEPWLVSEVRISGDLKLISVLASG 358 (636)
T ss_pred CeEEEeeeCCCCCCccceeEEEEeCcEEEEEEEeeC
Confidence 99999999999877 89999999999999999974
No 6
>smart00276 GLECT Galectin. Galectin - galactose-binding lectin
Probab=99.88 E-value=1.9e-22 Score=182.78 Aligned_cols=90 Identities=38% Similarity=0.579 Sum_probs=83.2
Q ss_pred eeeeccCCCCcEEEEeeecC-CCCeeEEEEeecCCCCCCeEEEEeeeeCCCeEEEecccCCccCceeeecCCCCCCCCCC
Q psy11967 442 KFINYKYDRGVSINTNDLSA-LVFRFAVNLVISGHDDDDIALHFNPRFDVNYCVRNSCRNKVWGEEEKAAYVSNPFKLGE 520 (539)
Q Consensus 442 k~i~~gl~~G~~I~i~G~~~-~~~rF~INl~~g~~~~~DIAlHfNPRF~~~~VV~NS~~~G~Wg~EER~~~~~fPF~~Gq 520 (539)
..|++||++|++|+++|+++ +++||+|||+++ .+||||||||||+++.|||||+++|.||+|||.. .|||++|+
T Consensus 3 ~~lp~~l~~G~~i~i~G~~~~~~~~F~inl~~~---~~di~lH~n~rf~~~~iV~Ns~~~g~Wg~Eer~~--~~Pf~~g~ 77 (128)
T smart00276 3 LPIPGGLKPGQTLTVRGIVLPDAKRFSINLLTG---GDDIALHFNPRFNENKIVCNSKLNGSWGSEEREG--GFPFQPGQ 77 (128)
T ss_pred ccCCCCCCCCCEEEEEEEECCCCCEEEEEeecC---CCCEEEEEeccCCCCEEEEeCccCCccchheEcC--CCCCCCCC
Confidence 34678999999999999985 479999999985 2699999999999999999999999999999997 79999999
Q ss_pred eEEEEEEEeCCeEEEe
Q psy11967 521 NFVLEIFCAPSEFMPV 536 (539)
Q Consensus 521 ~F~l~I~~~~~~F~~~ 536 (539)
+|+|.|.|.+++|+|.
T Consensus 78 ~F~l~i~~~~~~f~i~ 93 (128)
T smart00276 78 PFDLTIIVQPDHFQIF 93 (128)
T ss_pred EEEEEEEEcCCEEEEE
Confidence 9999999999999985
No 7
>cd00070 GLECT Galectin/galactose-binding lectin. This domain exclusively binds beta-galactosides, such as lactose, and does not require metal ions for activity. GLECT domains occur as homodimers or tandemly repeated domains. They are developmentally regulated and may be involved in differentiation, cell-cell interaction and cellular regulation.
Probab=99.86 E-value=1.2e-21 Score=177.12 Aligned_cols=91 Identities=36% Similarity=0.553 Sum_probs=83.5
Q ss_pred eeeeeccCCCCcEEEEeeecC-CCCeeEEEEeecCCCCCCeEEEEeeeeCCCeEEEecccCCccCceeeecCCCCCCCCC
Q psy11967 441 EKFINYKYDRGVSINTNDLSA-LVFRFAVNLVISGHDDDDIALHFNPRFDVNYCVRNSCRNKVWGEEEKAAYVSNPFKLG 519 (539)
Q Consensus 441 ~k~i~~gl~~G~~I~i~G~~~-~~~rF~INl~~g~~~~~DIAlHfNPRF~~~~VV~NS~~~G~Wg~EER~~~~~fPF~~G 519 (539)
..-++++|++|++|++.|.+. +++||+|||+++. +||||||||||+++.|||||+.+|.||.|||.. .|||++|
T Consensus 3 ~~~l~~~l~~G~~i~i~G~~~~~~~~f~Inl~~~~---~~i~lH~n~rf~~~~IV~Ns~~~g~Wg~Eer~~--~~pf~~g 77 (127)
T cd00070 3 KLPLPGGLKPGSTLTVKGRVLPNAKRFSINLGTGS---SDIALHFNPRFDENVIVRNSFLNGNWGPEERSG--GFPFQPG 77 (127)
T ss_pred ccccCCCCcCCCEEEEEEEECCCCCEEEEEEecCC---CCEEEEEeeeCCCCEEEEcCCCCCEecHhhccC--CCCCCCC
Confidence 345678999999999999985 4899999999853 399999999999999999999999999999997 7999999
Q ss_pred CeEEEEEEEeCCeEEEe
Q psy11967 520 ENFVLEIFCAPSEFMPV 536 (539)
Q Consensus 520 q~F~l~I~~~~~~F~~~ 536 (539)
++|+|.|.|++++|+|.
T Consensus 78 ~~F~l~i~~~~~~f~i~ 94 (127)
T cd00070 78 QPFELTILVEEDKFQIF 94 (127)
T ss_pred CeEEEEEEEcCCEEEEE
Confidence 99999999999999985
No 8
>PF00337 Gal-bind_lectin: Galactoside-binding lectin; InterPro: IPR001079 Galectins (also known as galaptins or S-lectin) are a family of proteins defined by having at least one characteristic carbohydrate recognition domain (CRD) with an affinity for beta-galactosides and sharing certain sequence elements. Members of the galectins family are found in mammals, birds, amphibians, fish, nematodes, sponges, and some fungi. Galectins are known to carry out intra- and extracellular functions through glycoconjugate-mediated recogntion. From the cytosol they may be secreted by non-classical pathways, but they may also be targeted to the nucleus or specific sub-cytosolic sites. Within the same peptide chain some galectins have a CRD with only a few additional amino acids, whereas others have two CRDs joined by a link peptide, and one (galectin-3) has one CRD joined to a different type of domain [, ]. The galectin carbohydrate recognition domain (CRD) is a beta-sandwich of about 135 amino acid. The two sheets are slightly bent with 6 strands forming the concave side and 5 strands forming the convex side. The concave side forms a groove in which carbohydrate is bound, and which is long enough to hold about a linear tetrasaccharide [, ].; GO: 0005529 sugar binding; PDB: 2WSU_B 2WT0_A 2WT1_A 2WT2_B 2WSV_A 1HLC_A 2ZGQ_A 3M3Q_B 1WW5_C 3M3E_A ....
Probab=99.86 E-value=1.4e-21 Score=177.11 Aligned_cols=96 Identities=38% Similarity=0.504 Sum_probs=87.6
Q ss_pred CceeeeeccCCCCcEEEEeeecC-CCCeeEEEEeec-CCCCCCeEEEEeeeeCC-CeEEEecccCCccCceeeecCCCCC
Q psy11967 439 DDEKFINYKYDRGVSINTNDLSA-LVFRFAVNLVIS-GHDDDDIALHFNPRFDV-NYCVRNSCRNKVWGEEEKAAYVSNP 515 (539)
Q Consensus 439 ~g~k~i~~gl~~G~~I~i~G~~~-~~~rF~INl~~g-~~~~~DIAlHfNPRF~~-~~VV~NS~~~G~Wg~EER~~~~~fP 515 (539)
|++.-++.||.+|++|+++|.++ +++||+|||+++ ..+.+||||||||||++ +.|||||+.+|.||+|||.. .||
T Consensus 1 pf~~~l~~~l~~G~~i~i~G~~~~~~~~f~inl~~~~~~~~~~i~lH~~~rf~~~~~iv~Ns~~~g~Wg~Ee~~~--~~p 78 (133)
T PF00337_consen 1 PFTARLPGGLSPGDSIIIRGTVPPDAKRFSINLQTGPNDPDDDIALHFNPRFDEQNVIVRNSRINGKWGQEERES--PFP 78 (133)
T ss_dssp SEEEEETTEEETTEEEEEEEEEBTTSSBEEEEEEES-STTTTEEEEEEEEECTTEEEEEEEEEETTEE-SEEEES--STS
T ss_pred CceEEcCCCCCCCcEEEEEEEECCCCCEEEEEecCCCcCCCCCEEEEEEEEeCCCceEEEeceECCEeccceeee--eee
Confidence 45667899999999999999985 699999999997 35789999999999999 99999999999999999976 699
Q ss_pred CCCCCeEEEEEEEeCCeEEEe
Q psy11967 516 FKLGENFVLEIFCAPSEFMPV 536 (539)
Q Consensus 516 F~~Gq~F~l~I~~~~~~F~~~ 536 (539)
|++|++|+|+|.+++++|+|.
T Consensus 79 f~~g~~F~i~I~~~~~~f~I~ 99 (133)
T PF00337_consen 79 FQPGQPFEIRIRVEEDGFKIY 99 (133)
T ss_dssp STTTSEEEEEEEEESSEEEEE
T ss_pred ecCCceEEEEEEEecCeeEEE
Confidence 999999999999999999985
No 9
>KOG3587|consensus
Probab=99.79 E-value=4.9e-19 Score=164.15 Aligned_cols=93 Identities=41% Similarity=0.589 Sum_probs=83.3
Q ss_pred eeeeccCCCCcEEEEeeecCC--CCeeEEEEeecCC--CCCCeEEEEeeeeCCCeEEEecccCCccCceeeecCCCCCCC
Q psy11967 442 KFINYKYDRGVSINTNDLSAL--VFRFAVNLVISGH--DDDDIALHFNPRFDVNYCVRNSCRNKVWGEEEKAAYVSNPFK 517 (539)
Q Consensus 442 k~i~~gl~~G~~I~i~G~~~~--~~rF~INl~~g~~--~~~DIAlHfNPRF~~~~VV~NS~~~G~Wg~EER~~~~~fPF~ 517 (539)
--+..+|++|..+.++|++.. +++|++++.++.+ ...||||||||||+++.|||||+++|.||.|||.. ++||+
T Consensus 8 ~~~~~~l~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~dia~Hfnprf~~~~VVrNs~~~g~Wg~eE~~~--~~PF~ 85 (143)
T KOG3587|consen 8 VPIPSGLPPGSQVTIKGLVLYGIPKRFAVNLRFGTNLDSDSDIALHFNPRFDEKGVVRNSLINGEWGLEEREG--GNPFQ 85 (143)
T ss_pred cccccCcCCCcEEEEEEEEcccCCCcceeeeEeecccCCCCcEEEEEeccCCCCeEEEecccCCccCchhhcC--CCCCC
Confidence 345889999999999999864 4788888887763 34679999999999999999999999999999998 79999
Q ss_pred CCCeEEEEEEEeCCeEEEe
Q psy11967 518 LGENFVLEIFCAPSEFMPV 536 (539)
Q Consensus 518 ~Gq~F~l~I~~~~~~F~~~ 536 (539)
+|++|+|+|++++++|+|.
T Consensus 86 ~g~~F~l~I~~~~~~~~I~ 104 (143)
T KOG3587|consen 86 PGQPFDLTILVEEDKFQIF 104 (143)
T ss_pred CCCeEEEEEEEccCeEEEE
Confidence 9999999999999999985
No 10
>PLN03133 beta-1,3-galactosyltransferase; Provisional
Probab=99.69 E-value=7.5e-17 Score=179.04 Aligned_cols=95 Identities=26% Similarity=0.305 Sum_probs=83.7
Q ss_pred eeeeccCCCCcEEEEeeecC-CCCeeEEEEeecC---CCCCCeEEEEeeeeC------CCeEEEeccc-CCccCceeeec
Q psy11967 442 KFINYKYDRGVSINTNDLSA-LVFRFAVNLVISG---HDDDDIALHFNPRFD------VNYCVRNSCR-NKVWGEEEKAA 510 (539)
Q Consensus 442 k~i~~gl~~G~~I~i~G~~~-~~~rF~INl~~g~---~~~~DIAlHfNPRF~------~~~VV~NS~~-~G~Wg~EER~~ 510 (539)
.-|++||.+|.+|+|.|++. +++||+|||+++. +++.+|||||||||+ +..||+||++ ++.||.|||..
T Consensus 166 ~~iP~GL~~Gs~ItI~G~p~~~~~~F~InL~g~~~~g~~~~~iaLHfNpRf~gd~~t~~~vIV~NT~~~~~~WG~EERc~ 245 (636)
T PLN03133 166 LKIPCGLTQGSSITIIGIPDGLLGNFRIDLTGEPLPGEPDPPIILHYNVRLLGDKITEDPVIVQNTWTAAHDWGEEERCP 245 (636)
T ss_pred EecCCcCCCCCEEEEEEEeCCCCCeEEEEEeecCcCCCCCCCEEEEEcCccCCCccccCCEEEeCCCcCCCcccHhhhcC
Confidence 45889999999999999985 5899999998873 356799999999997 3689999998 99999999984
Q ss_pred -------------------------------------------------CCCCCCCCCCeEEEEEEEeCCeEEEe
Q psy11967 511 -------------------------------------------------YVSNPFKLGENFVLEIFCAPSEFMPV 536 (539)
Q Consensus 511 -------------------------------------------------~~~fPF~~Gq~F~l~I~~~~~~F~~~ 536 (539)
..+|||++|++|+++|.|..++|+|.
T Consensus 246 ~~~~~~~~~vd~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fPF~~G~~F~lti~~g~egf~v~ 320 (636)
T PLN03133 246 SPDPDKNKKVDDLDQCNKMVGRDDKRVLSTSLHSNGSRRSPMSQEATKARRYFPFKQGYLSVATLRVGTEGIQMT 320 (636)
T ss_pred CCCccccccccchhhhhhhhcccccccccccccccccccccccccccccccCCCCCCCCcEEEEEEecCCEEEEE
Confidence 01499999999999999999999985
No 11
>KOG1202|consensus
Probab=99.66 E-value=3.2e-17 Score=185.70 Aligned_cols=90 Identities=26% Similarity=0.494 Sum_probs=81.2
Q ss_pred ccccccccccccCCCcCCccchHHHHHhHhCccCCCCCCCCCcccccCCchhhHHHHHHHHHhhcCcccCHHHHhhhchh
Q psy11967 332 PAFCKRYKNVTSGDVKQENVTVQKVIGDILGIQNITSISDSATLSDLGLDSLMAADVKNVLQSKFNISLTNEQIKELKFN 411 (539)
Q Consensus 332 p~~~~~~~~~~~~~~~g~~~~~~~~va~Ilgi~~~~~i~~~~~L~dlGmDSLM~vEi~q~ler~~~i~l~~~ei~~lT~~ 411 (539)
|++.+|++...-..+.-...+|+++||+|||++|++.++.+.+|+||||||||++||||+|||+|+++||++|||+|||.
T Consensus 1988 pvvsS~v~AEk~~~d~~~~~dLiatiA~IlGlrD~~~vn~~asLaDLGlDSLMsvEikQtLER~~dlVLS~qEiRqLT~~ 2067 (2376)
T KOG1202|consen 1988 PVVSSFVVAEKRKADQDSGRDLIATIAHILGLRDLKAVNDDASLADLGLDSLMSVEIKQTLEREFDLVLSAQEIRQLTLR 2067 (2376)
T ss_pred hHHHHHHHHHhhcccccccccHHHHHHHHhcchhHhhccCCCchhhccchhhhhHHHHHHHhhhhceeeeHHHHHHHHHH
Confidence 55567777766655555788999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhcCCC
Q psy11967 412 AVESLLKVPK 421 (539)
Q Consensus 412 kL~~~~~~~~ 421 (539)
||++|++.++
T Consensus 2068 kLqql~~~a~ 2077 (2376)
T KOG1202|consen 2068 KLQQLDSKAD 2077 (2376)
T ss_pred HHHHhhccCC
Confidence 9999996655
No 12
>PF00550 PP-binding: Phosphopantetheine attachment site; InterPro: IPR006163 Phosphopantetheine (or pantetheine 4' phosphate) is the prosthetic group of acyl carrier proteins (ACP) in some multienzyme complexes where it serves as a 'swinging arm' for the attachment of activated fatty acid and amino-acid groups []. The amino-terminal region of the ACP proteins is well defined and consists of alpha four helices arranged in a right-handed bundle held together by interhelical hydrophobic interactions. The Asp-Ser-Leu (DSL)motif is conserved in all of the ACP sequences, and the 4'-PP prosthetic group is covalently linked via a phosphodiester bond to the serine residue. The DSL sequence is present at the amino terminus of helix II, a domain of the protein referred to as the recognition helix and which is responsible for the interaction of ACPs with the enzymes of type II fatty acid synthesis [].; GO: 0048037 cofactor binding; PDB: 3EJB_E 3EJE_G 1L0I_A 2FHS_C 3EJD_E 2FAE_B 2FAD_B 2FAC_B 2K94_A 1ACP_A ....
Probab=98.77 E-value=1.4e-08 Score=80.85 Aligned_cols=63 Identities=25% Similarity=0.486 Sum_probs=58.9
Q ss_pred hHHHHHhHhCccCCCCCCCCCcccccCCchhhHHHHHHHHHhhcCcccCHHHHhh-hchhhhhhh
Q psy11967 353 VQKVIGDILGIQNITSISDSATLSDLGLDSLMAADVKNVLQSKFNISLTNEQIKE-LKFNAVESL 416 (539)
Q Consensus 353 ~~~~va~Ilgi~~~~~i~~~~~L~dlGmDSLM~vEi~q~ler~~~i~l~~~ei~~-lT~~kL~~~ 416 (539)
+++.++.++++ +.++++.+.+|.++|+|||+++++...+|++||+.++..++.+ .|+++|++.
T Consensus 3 l~~~~~~~l~~-~~~~i~~~~~~~~lG~DSl~~~~l~~~l~~~~g~~i~~~~~~~~~ti~~l~~~ 66 (67)
T PF00550_consen 3 LREIIAEVLGV-DPEEIDPDTDFFDLGLDSLDAIELVSELEEEFGIKIPPSDLFEHPTIRDLAEY 66 (67)
T ss_dssp HHHHHHHHHTS-SGGCTSTTSBTTTTTSSHHHHHHHHHHHHHHHTSSTTHHHHCTSSSHHHHHHH
T ss_pred HHHHHHHHHCc-CHhhCCCCCCHHHhCCchHHHHHHHHHHHHHHcCCCCHHHHHcCCCHHHHHhH
Confidence 57889999997 7799999999999999999999999999999999999999999 999988764
No 13
>PRK00982 acpP acyl carrier protein; Provisional
Probab=98.62 E-value=3.9e-08 Score=81.40 Aligned_cols=67 Identities=24% Similarity=0.444 Sum_probs=60.7
Q ss_pred chHHHHHhHhCccCCCCCCCCCcc-cccCCchhhHHHHHHHHHhhcCcccCHHHHhh-hchhhhhhhhcC
Q psy11967 352 TVQKVIGDILGIQNITSISDSATL-SDLGLDSLMAADVKNVLQSKFNISLTNEQIKE-LKFNAVESLLKV 419 (539)
Q Consensus 352 ~~~~~va~Ilgi~~~~~i~~~~~L-~dlGmDSLM~vEi~q~ler~~~i~l~~~ei~~-lT~~kL~~~~~~ 419 (539)
.+++.+|..+++ +...++.+.+| .++|+||||.+||...+|++||+.++..++.+ .|+++|.+....
T Consensus 7 ~l~~~l~~~l~~-~~~~i~~d~~l~~dlglDSl~~~~li~~le~~f~i~i~~~~~~~~~ti~~l~~~l~~ 75 (78)
T PRK00982 7 KVKKIIVEQLGV-DEEEVTPEASFVDDLGADSLDTVELVMALEEEFGIEIPDEDAEKIKTVGDAVDYIEK 75 (78)
T ss_pred HHHHHHHHHHCC-CHHHCCCCcchHhhcCCCHHHHHHHHHHHHHHHCCCcCHHHHHHcCcHHHHHHHHHH
Confidence 356889999999 67899999999 99999999999999999999999999999998 899999886543
No 14
>TIGR00517 acyl_carrier acyl carrier protein. S (Ser) at position 37 in the seed alignment, in the motif DSLD, is the phosphopantetheine attachment site.
Probab=98.36 E-value=5.8e-07 Score=74.42 Aligned_cols=67 Identities=21% Similarity=0.424 Sum_probs=59.0
Q ss_pred chHHHHHhHhCccCCCCCCCCCcc-cccCCchhhHHHHHHHHHhhcCcccCHHHHhh-hchhhhhhhhcC
Q psy11967 352 TVQKVIGDILGIQNITSISDSATL-SDLGLDSLMAADVKNVLQSKFNISLTNEQIKE-LKFNAVESLLKV 419 (539)
Q Consensus 352 ~~~~~va~Ilgi~~~~~i~~~~~L-~dlGmDSLM~vEi~q~ler~~~i~l~~~ei~~-lT~~kL~~~~~~ 419 (539)
.+++.++..+++ +...++.+.+| .+||+|||..+||...||++||+.++..++.+ -|+++|.+...+
T Consensus 7 ~l~~il~~~~~~-~~~~i~~~~~l~~dlglDSl~~veli~~lE~~f~i~i~~~~~~~~~tv~~l~~~i~~ 75 (77)
T TIGR00517 7 KVKAIIKEQLNV-DEDQVTPDASFVEDLGADSLDTVELVMALEEEFDIEIPDEEAEKIATVGDAVDYIEE 75 (77)
T ss_pred HHHHHHHHHHCC-CHHHCCCCcchhhhcCCcHHHHHHHHHHHHHHHCCCCCHHHHHHCCcHHHHHHHHHh
Confidence 356788888999 56889999998 78999999999999999999999999999988 799998876543
No 15
>PRK05883 acyl carrier protein; Validated
Probab=98.29 E-value=1.1e-06 Score=76.06 Aligned_cols=67 Identities=22% Similarity=0.399 Sum_probs=61.3
Q ss_pred chHHHHHhHhCccCCCCCCCCCcc-cccCCchhhHHHHHHHHHhhcCcccCHHHHhh-hchhhhhhhhcC
Q psy11967 352 TVQKVIGDILGIQNITSISDSATL-SDLGLDSLMAADVKNVLQSKFNISLTNEQIKE-LKFNAVESLLKV 419 (539)
Q Consensus 352 ~~~~~va~Ilgi~~~~~i~~~~~L-~dlGmDSLM~vEi~q~ler~~~i~l~~~ei~~-lT~~kL~~~~~~ 419 (539)
-+++.++..|++ +...|.++.+| .+||+|||.-+|+-..||++||+.++..++.+ -|+++|.+....
T Consensus 18 ~l~~iia~~l~v-~~~~I~~d~~l~~dlg~DSL~~v~lv~~lE~~fgI~i~~ee~~~~~TV~dl~~~v~~ 86 (91)
T PRK05883 18 TLLSILRDDLNV-DLTRVTPDARLVDDVGLDSVAFAVGMVAIEERLGVALSEEDLLSCDTVGDLEAAIAA 86 (91)
T ss_pred HHHHHHHHHhCC-ChhhCCCCCchhhccCCChHHHHHHHHHHHHHHCCCcCHHHHHhCCCHHHHHHHHHH
Confidence 456889999999 77999999999 79999999999999999999999999999999 899999887654
No 16
>CHL00124 acpP acyl carrier protein; Validated
Probab=98.28 E-value=8.6e-07 Score=74.24 Aligned_cols=66 Identities=23% Similarity=0.461 Sum_probs=59.2
Q ss_pred chHHHHHhHhCccCCCCCCCCCcccc-cCCchhhHHHHHHHHHhhcCcccCHHHHhh-hchhhhhhhhc
Q psy11967 352 TVQKVIGDILGIQNITSISDSATLSD-LGLDSLMAADVKNVLQSKFNISLTNEQIKE-LKFNAVESLLK 418 (539)
Q Consensus 352 ~~~~~va~Ilgi~~~~~i~~~~~L~d-lGmDSLM~vEi~q~ler~~~i~l~~~ei~~-lT~~kL~~~~~ 418 (539)
.+.+.++.++++ +...+.++.+|.+ ||+|||..+||...||++||+.++..++.+ -|+++|.....
T Consensus 9 ~l~~ii~~~~~~-~~~~i~~d~~l~~dlg~DSl~~~eli~~le~~f~i~i~~~~~~~~~tv~~l~~~i~ 76 (82)
T CHL00124 9 KVQSIVAEQLGI-EKSEVTLDANFTRDLGADSLDVVELVMAIEEKFDIEIPDEDAEKISTLQEAVDFIS 76 (82)
T ss_pred HHHHHHHHHHCC-CHHHCCCCcchhhhcCCcHHHHHHHHHHHHHHHCCccCHHHHHHcCCHHHHHHHHH
Confidence 355788999999 6688999999987 999999999999999999999999999998 89999887654
No 17
>PRK05350 acyl carrier protein; Provisional
Probab=98.28 E-value=1.1e-06 Score=74.08 Aligned_cols=66 Identities=24% Similarity=0.332 Sum_probs=59.2
Q ss_pred chHHHHHhHhCccCCCCCCCCCcc-cccCCchhhHHHHHHHHHhhcCcccCHHHHhh-hchhhhhhhhc
Q psy11967 352 TVQKVIGDILGIQNITSISDSATL-SDLGLDSLMAADVKNVLQSKFNISLTNEQIKE-LKFNAVESLLK 418 (539)
Q Consensus 352 ~~~~~va~Ilgi~~~~~i~~~~~L-~dlGmDSLM~vEi~q~ler~~~i~l~~~ei~~-lT~~kL~~~~~ 418 (539)
-+.+.++.++++ ++.++..+.+| .+||+|||..+|+-..||++||+.++..++.+ -|+++|.+...
T Consensus 10 ~v~~ii~~~~~~-~~~~i~~d~~l~~dlg~DSld~veli~~lE~~fgI~i~~~~~~~~~Tv~dlv~~v~ 77 (82)
T PRK05350 10 RLRAILVELFEI-DPEDITPEANLYEDLDLDSIDAVDLVVHLQKLTGKKIKPEEFKSVRTVQDVVDAVE 77 (82)
T ss_pred HHHHHHHHHhCC-CHHHCCCCccchhhcCCCHHHHHHHHHHHHHHHCCccCHHHHhhcCcHHHHHHHHH
Confidence 355788889999 77899999998 99999999999999999999999999999998 89998887543
No 18
>PRK08172 putative acyl carrier protein IacP; Validated
Probab=98.20 E-value=2.2e-06 Score=72.76 Aligned_cols=66 Identities=29% Similarity=0.427 Sum_probs=60.5
Q ss_pred hHHHHHhHhCccCCCCCCCCCcc-cccCCchhhHHHHHHHHHhhcCcccCHHHHhh-hchhhhhhhhcC
Q psy11967 353 VQKVIGDILGIQNITSISDSATL-SDLGLDSLMAADVKNVLQSKFNISLTNEQIKE-LKFNAVESLLKV 419 (539)
Q Consensus 353 ~~~~va~Ilgi~~~~~i~~~~~L-~dlGmDSLM~vEi~q~ler~~~i~l~~~ei~~-lT~~kL~~~~~~ 419 (539)
+++.+|..|++ +.+++.++++| .+||+|||--+|+-..||++||+.++..++.+ -|++++.+....
T Consensus 9 v~~iiae~l~v-~~~~i~~d~~l~~dL~~DSld~v~lv~~lEe~F~I~i~~~d~~~i~Tv~di~~~v~~ 76 (82)
T PRK08172 9 VKKVITSCIAV-DVDSINGQTHLVEDLYADSLDLIDIVFGLSEEFDISCNENDLPDMTTFADICRVVKK 76 (82)
T ss_pred HHHHHHHHHCC-CHHHCCCCcchhhhcCCCHHHHHHHHHHHHHHHCCCcCHHHHHHCCCHHHHHHHHHH
Confidence 56889999999 77999999999 88999999999999999999999999999999 899999876543
No 19
>PRK12449 acyl carrier protein; Provisional
Probab=98.17 E-value=3.5e-06 Score=70.25 Aligned_cols=65 Identities=17% Similarity=0.328 Sum_probs=58.7
Q ss_pred hHHHHHhHhCccCCCCCCCCCcc-cccCCchhhHHHHHHHHHhhcCcccCHHHHhh-hchhhhhhhhc
Q psy11967 353 VQKVIGDILGIQNITSISDSATL-SDLGLDSLMAADVKNVLQSKFNISLTNEQIKE-LKFNAVESLLK 418 (539)
Q Consensus 353 ~~~~va~Ilgi~~~~~i~~~~~L-~dlGmDSLM~vEi~q~ler~~~i~l~~~ei~~-lT~~kL~~~~~ 418 (539)
+.+.++.++++ +...+..+++| .+||+||+..++|-..||.+||+.++..++.+ -|+++|.+...
T Consensus 10 l~~il~~~~~~-~~~~i~~~~~l~~dlg~DSl~~~~li~~lE~~f~i~i~~~~~~~~~ti~~l~~~l~ 76 (80)
T PRK12449 10 LINLIQKQRSY-LSLAITEQTHLKDDLAVDSIELVEFIINVEDEFHIAIPDEDVEDMVSMGDLLDYLV 76 (80)
T ss_pred HHHHHHHHhCC-CccccCCCCcHHHHcCCcHHHHHHHHHHHHHHhCCCCCHHHHHhCCCHHHHHHHHH
Confidence 55788899998 56789999999 79999999999999999999999999999999 89999887654
No 20
>PRK07117 acyl carrier protein; Validated
Probab=98.08 E-value=4.7e-06 Score=70.39 Aligned_cols=64 Identities=16% Similarity=0.303 Sum_probs=59.0
Q ss_pred hHHHHHhHh-CccCCCCCCCCCcccccCCchhhHHHHHHHHHhhcCcccCHHHHhh-hchhhhhhhh
Q psy11967 353 VQKVIGDIL-GIQNITSISDSATLSDLGLDSLMAADVKNVLQSKFNISLTNEQIKE-LKFNAVESLL 417 (539)
Q Consensus 353 ~~~~va~Il-gi~~~~~i~~~~~L~dlGmDSLM~vEi~q~ler~~~i~l~~~ei~~-lT~~kL~~~~ 417 (539)
+++.++.++ ++ +.+++.++++|.|||+|||=.+|+-+.+|++||+.+|.+++.+ -|++++....
T Consensus 10 v~~ii~e~~p~i-~~~~I~~~~~l~DLg~DSlD~veiv~~led~f~i~I~~~~~~~i~Tv~d~v~~i 75 (79)
T PRK07117 10 LVRHIREVLPDL-DQHQFQPEDSLVDLGANSMDRAEIVIMTLESLSLKIPLVEFAGAKNIGELADLL 75 (79)
T ss_pred HHHHHHHHcCCC-CHHHCCCCCChhhcCCChHHHHHHHHHHHHHHCCccCHHHHHhcCCHHHHHHHH
Confidence 568899999 79 7799999999999999999999999999999999999999998 8998887754
No 21
>PRK05828 acyl carrier protein; Validated
Probab=97.99 E-value=1.1e-05 Score=68.91 Aligned_cols=56 Identities=18% Similarity=0.299 Sum_probs=50.4
Q ss_pred hCccCCCCCCCCCcccccCCchhhHHHHHHHHHhhcCcccCHHHHhh-hchhhhhhhh
Q psy11967 361 LGIQNITSISDSATLSDLGLDSLMAADVKNVLQSKFNISLTNEQIKE-LKFNAVESLL 417 (539)
Q Consensus 361 lgi~~~~~i~~~~~L~dlGmDSLM~vEi~q~ler~~~i~l~~~ei~~-lT~~kL~~~~ 417 (539)
+.+ +++.+..+++|.|||+|||-.+|+-..||++||+.+|..++.+ -|++++....
T Consensus 19 ~~~-~~d~i~~~~~~~dLg~DSLd~velv~~lE~~f~I~i~~e~~~~i~Tv~d~~~~v 75 (84)
T PRK05828 19 FAV-TLDESNINKPYRELKIDSLDMFSIIVSLESEFNIEFSDEKLMKLKNLADLILEV 75 (84)
T ss_pred cCC-CcccccCCCCHHhcCCCHHHHHHHHHHHHHHHCCCcCHHHHHhCCCHHHHHHHH
Confidence 445 6688899999999999999999999999999999999999999 8998887654
No 22
>PRK07639 acyl carrier protein; Provisional
Probab=97.97 E-value=1.4e-05 Score=68.41 Aligned_cols=68 Identities=19% Similarity=0.418 Sum_probs=57.9
Q ss_pred chHHHHHhHhCccCCCCCCCCCccc-ccCCchhhHHHHHHHHHhhcCcccCHHHH--hh-hchhhhhhhhcC
Q psy11967 352 TVQKVIGDILGIQNITSISDSATLS-DLGLDSLMAADVKNVLQSKFNISLTNEQI--KE-LKFNAVESLLKV 419 (539)
Q Consensus 352 ~~~~~va~Ilgi~~~~~i~~~~~L~-dlGmDSLM~vEi~q~ler~~~i~l~~~ei--~~-lT~~kL~~~~~~ 419 (539)
-+++.++.++++..++.+..+.+|. +||+|||..+|+-..||.+||+.++..++ +. -|+++|......
T Consensus 9 ~i~~il~e~l~~~~~~~i~~d~~l~edL~lDSld~velv~~lE~~fgi~i~d~~~~~~~~~Tv~~l~~~i~~ 80 (86)
T PRK07639 9 AVLKIMEEKLELKNVTHLEETMRLNEDLYIDSVMMLQLIVYIEMDVKLCVPEDEVDPKAFLTVGSLLDFMEE 80 (86)
T ss_pred HHHHHHHHHhCCCccccCCCCCCcccccCCChHHHHHHHHHHHHHHCCccCHHHccHHHhCCHHHHHHHHHH
Confidence 3567888999996668899999995 59999999999999999999999999988 45 788888776543
No 23
>COG0236 AcpP Acyl carrier protein [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.96 E-value=1.2e-05 Score=67.38 Aligned_cols=67 Identities=25% Similarity=0.493 Sum_probs=58.2
Q ss_pred chHHHHHhHhCccCCCCCCCCCccc-ccCCchhhHHHHHHHHHhhcCcccCHHHHhh-hchhhhhhhhcC
Q psy11967 352 TVQKVIGDILGIQNITSISDSATLS-DLGLDSLMAADVKNVLQSKFNISLTNEQIKE-LKFNAVESLLKV 419 (539)
Q Consensus 352 ~~~~~va~Ilgi~~~~~i~~~~~L~-dlGmDSLM~vEi~q~ler~~~i~l~~~ei~~-lT~~kL~~~~~~ 419 (539)
.+++.++..|++ +...+..+.++. |||+|||-.+||-+.||++||+.+|.+++.+ -|+++|.+....
T Consensus 9 ~i~~ii~e~l~~-~~~~i~~~~~~~~dlg~DSld~veLi~~lE~~f~i~i~~e~~~~~~tv~~l~~~i~~ 77 (80)
T COG0236 9 RVKDIIAEQLGV-DEEEITTEASFVEDLGLDSLDLVELVMALEEEFGIEIPDEELENIKTVGDLVDYIEE 77 (80)
T ss_pred HHHHHHHHHhCC-chhhcCcccccccccCccHHHHHHHHHHHHHHHCCcCCHHHHHHHHhHHHHHHHHHH
Confidence 356888899999 477888888888 5999999999999999999999999999988 888888776543
No 24
>PRK07081 acyl carrier protein; Provisional
Probab=97.91 E-value=1.3e-05 Score=68.17 Aligned_cols=65 Identities=22% Similarity=0.460 Sum_probs=54.0
Q ss_pred hHHHHHhHhCcc-CCCCCCCCCcccccCCchhhHHHHHHHHHhhcCcccCHHHHhh---hchhhhhhhh
Q psy11967 353 VQKVIGDILGIQ-NITSISDSATLSDLGLDSLMAADVKNVLQSKFNISLTNEQIKE---LKFNAVESLL 417 (539)
Q Consensus 353 ~~~~va~Ilgi~-~~~~i~~~~~L~dlGmDSLM~vEi~q~ler~~~i~l~~~ei~~---lT~~kL~~~~ 417 (539)
+++-++..+++. +++.++.+.+|.|||+|||..+|+-..||++||+.++..++.. -|+.+|.+..
T Consensus 5 i~~ii~~~~~~~~~~~~i~~d~~l~dlGlDSl~~v~li~~lE~~f~I~i~~~~~~~~~~~tv~~l~~~V 73 (83)
T PRK07081 5 IRTILKKVAKLEVPIDSIADDADLYEAGLSSLATVQLMLAIEDAFDIEIPDEMLNRKLFASIDALAGAV 73 (83)
T ss_pred HHHHHHHHHcCCCCHHhcCCCCCHhhcCCCHHHHHHHHHHHHHHhCCcCCHHHcCHHHhccHHHHHHHH
Confidence 556677765553 5579999999999999999999999999999999999999853 6777777644
No 25
>PTZ00171 acyl carrier protein; Provisional
Probab=97.85 E-value=2.3e-05 Score=73.72 Aligned_cols=67 Identities=18% Similarity=0.385 Sum_probs=59.5
Q ss_pred chHHHHHhHhCccCCCCCCCCCcc-cccCCchhhHHHHHHHHHhhcCcccCHHHHhh-hchhhhhhhhcC
Q psy11967 352 TVQKVIGDILGIQNITSISDSATL-SDLGLDSLMAADVKNVLQSKFNISLTNEQIKE-LKFNAVESLLKV 419 (539)
Q Consensus 352 ~~~~~va~Ilgi~~~~~i~~~~~L-~dlGmDSLM~vEi~q~ler~~~i~l~~~ei~~-lT~~kL~~~~~~ 419 (539)
.+.+.++.++++ +.+++.++++| .|||+|||--+||-..||++||+.+|.+|+.+ -|++++.+....
T Consensus 74 ~l~eiiae~l~v-d~~~I~~ds~~~~dLg~DSLd~veLv~~LEdeFgI~Ipded~~~i~TV~dlvd~V~~ 142 (148)
T PTZ00171 74 RVKKVVKNFEKV-DASKITPESNFVKDLGADSLDVVELLIAIEQEFNLTIPDHDAEKIKTVQDAIDYIEQ 142 (148)
T ss_pred HHHHHHHHHhCC-CHhhCCCCcchhhhcCCCHHHHHHHHHHHHHHHCCccCHHHHHHCCCHHHHHHHHHH
Confidence 455888899999 77899999998 59999999999999999999999999999998 899998886543
No 26
>PRK09184 acyl carrier protein; Provisional
Probab=97.84 E-value=2e-05 Score=68.04 Aligned_cols=68 Identities=21% Similarity=0.382 Sum_probs=56.6
Q ss_pred chHHHHHhHhCcc--CCCCCCCCCcc--cccCCchhhHHHHHHHHHhhcCcccCHHH---Hhh-hchhhhhhhhcC
Q psy11967 352 TVQKVIGDILGIQ--NITSISDSATL--SDLGLDSLMAADVKNVLQSKFNISLTNEQ---IKE-LKFNAVESLLKV 419 (539)
Q Consensus 352 ~~~~~va~Ilgi~--~~~~i~~~~~L--~dlGmDSLM~vEi~q~ler~~~i~l~~~e---i~~-lT~~kL~~~~~~ 419 (539)
.+++.|+..|+++ +++.|..+.+| .+||+|||=++||...||++||+.++..+ ++. .|++.|++....
T Consensus 10 ~l~~~I~e~l~~~~i~~~~I~~d~~l~~~dLglDSld~velv~~lE~~fgi~i~~~~~~~~~~~~TV~~l~~~I~~ 85 (89)
T PRK09184 10 ELAELIVEELNLEDVQPESIDADAPLYGEGLGLDSIDILEIALVISKRYGFQLRSDNPDNQRIFASLRALAAYVAA 85 (89)
T ss_pred HHHHHHHHHHCCCCCCHHHCCCCcccccccCCCcHHHHHHHHHHHHHHHCCcCCCcchhhhhccCCHHHHHHHHHH
Confidence 3568889999974 66899999998 57999999999999999999999998544 444 789988876544
No 27
>PRK06060 acyl-CoA synthetase; Validated
Probab=97.75 E-value=1.7e-05 Score=89.71 Aligned_cols=66 Identities=20% Similarity=0.238 Sum_probs=60.6
Q ss_pred hHHHHHhHhCccCCCCCCCCCcccccCCchhhHHHHHHHHHhhcCcccCHHHHhh-hchhhhhhhhc
Q psy11967 353 VQKVIGDILGIQNITSISDSATLSDLGLDSLMAADVKNVLQSKFNISLTNEQIKE-LKFNAVESLLK 418 (539)
Q Consensus 353 ~~~~va~Ilgi~~~~~i~~~~~L~dlGmDSLM~vEi~q~ler~~~i~l~~~ei~~-lT~~kL~~~~~ 418 (539)
+.+.+|.+||+.+...++.+.++.|||+||||++|++..|++.||+.||..++-+ .|+..|++...
T Consensus 550 v~~~~a~vl~~~~~~~i~~~~~f~~lG~dSl~av~l~~~l~~~~g~~l~~~~~~~~pt~~~la~~l~ 616 (705)
T PRK06060 550 VCAEAAKMLGEPDPWSVDQDLAFSELGFDSQMTVTLCKRLAAVTGLRLPETVGWDYGSISGLAQYLE 616 (705)
T ss_pred HHHHHHHHhCCCChhhCCCCCChhhcCchHHHHHHHHHHHHHHhCCCCCceeeecCCCHHHHHHHHH
Confidence 4578899999977788999999999999999999999999999999999999999 99999997654
No 28
>smart00823 PKS_PP Phosphopantetheine attachment site. Phosphopantetheine (or pantetheine 4' phosphate) is the prosthetic group of acyl carrier proteins (ACP) in some multienzyme complexes where it serves as a 'swinging arm' for the attachment of activated fatty acid and amino-acid groups PUBMED:5321311.
Probab=97.74 E-value=5.9e-05 Score=60.33 Aligned_cols=67 Identities=25% Similarity=0.380 Sum_probs=56.4
Q ss_pred chHHHHHhHhCccCCCCCCCCCcccccCCchhhHHHHHHHHHhhcCcccCHHHHhh-hchhhhhhhhc
Q psy11967 352 TVQKVIGDILGIQNITSISDSATLSDLGLDSLMAADVKNVLQSKFNISLTNEQIKE-LKFNAVESLLK 418 (539)
Q Consensus 352 ~~~~~va~Ilgi~~~~~i~~~~~L~dlGmDSLM~vEi~q~ler~~~i~l~~~ei~~-lT~~kL~~~~~ 418 (539)
.+...++..++......++.+..|.++|+||++.++++..|++.+++.++..++.+ .|+.+|+....
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~l~~~g~dSl~~~~~~~~l~~~~~~~i~~~~~~~~~t~~~l~~~i~ 83 (86)
T smart00823 16 LVREQVAAVLGHAAAEAIDPDRPFRDLGLDSLTAVELRNRLEAATGLRLPATLVFDHPTPAALAEHLA 83 (86)
T ss_pred HHHHHHHHHHCCCccccCCCCCCHHHcCchHHHHHHHHHHHHHHHCCCCChHHHHcCCCHHHHHHHHH
Confidence 35567777787744344688999999999999999999999999999999999887 99999887643
No 29
>PRK06508 acyl carrier protein; Provisional
Probab=97.58 E-value=9.4e-05 Score=64.47 Aligned_cols=55 Identities=29% Similarity=0.405 Sum_probs=49.9
Q ss_pred chHHHHHhHhCccCCCCCCCCCcc-cccCCchhhHHHHHHHHHhhcCcccCHHHHhh
Q psy11967 352 TVQKVIGDILGIQNITSISDSATL-SDLGLDSLMAADVKNVLQSKFNISLTNEQIKE 407 (539)
Q Consensus 352 ~~~~~va~Ilgi~~~~~i~~~~~L-~dlGmDSLM~vEi~q~ler~~~i~l~~~ei~~ 407 (539)
.+.+.++.++++ +.++|.++++| .+||+|||.-+||-..||++|||.++.+++..
T Consensus 7 kv~~Ilae~~~v-d~~~It~ds~~~edL~~DSLd~veli~~lE~eFgI~i~~ee~~~ 62 (93)
T PRK06508 7 KVADIIAETSDI-PRDTITPESHTIDDLGIDSLDFLDIVFAIDKAFGIKLPLEQWTQ 62 (93)
T ss_pred HHHHHHHHHhCC-CHHHCCCCCcchhccCCCHHHHHHHHHHHHHHHCCccCHHHHHH
Confidence 356788999999 77999999976 99999999999999999999999999999864
No 30
>PRK05087 D-alanine--poly(phosphoribitol) ligase subunit 2; Validated
Probab=97.41 E-value=0.00019 Score=60.57 Aligned_cols=63 Identities=21% Similarity=0.367 Sum_probs=50.0
Q ss_pred hHHHHHhHhCccCCCCCCCCCcccccC-CchhhHHHHHHHHHhhcCcccCHHHHhhhchhhhhhh
Q psy11967 353 VQKVIGDILGIQNITSISDSATLSDLG-LDSLMAADVKNVLQSKFNISLTNEQIKELKFNAVESL 416 (539)
Q Consensus 353 ~~~~va~Ilgi~~~~~i~~~~~L~dlG-mDSLM~vEi~q~ler~~~i~l~~~ei~~lT~~kL~~~ 416 (539)
+++.+..+++. +...+..+.+|.+.| +|||-.+||-..||++||+.++..++..-+|..+..+
T Consensus 7 I~~iL~~~~~~-~~~~~~~d~~l~~~g~lDSl~~veli~~lE~~fgi~i~~~e~~~~~f~Tv~~i 70 (78)
T PRK05087 7 VLDILEELTGE-DIVSENMDEDLFEEGILDSMGTVELLVELENRFDIEVPVSEFDRDDWNTPNKI 70 (78)
T ss_pred HHHHHHHHhCC-ChhccCCccchhhccCcchHHHHHHHHHHHHHhCCccChHhcCHHhhcCHHHH
Confidence 44566667776 445678899999988 6999999999999999999999999988444444433
No 31
>TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase. Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal.
Probab=96.57 E-value=0.0027 Score=77.47 Aligned_cols=64 Identities=20% Similarity=0.242 Sum_probs=58.2
Q ss_pred hHHHHHhHhCccCCCCCCCCCcccccCCchhhHHHHHHHHHhhcCcccCHHHHhh-hchhhhhhhh
Q psy11967 353 VQKVIGDILGIQNITSISDSATLSDLGLDSLMAADVKNVLQSKFNISLTNEQIKE-LKFNAVESLL 417 (539)
Q Consensus 353 ~~~~va~Ilgi~~~~~i~~~~~L~dlGmDSLM~vEi~q~ler~~~i~l~~~ei~~-lT~~kL~~~~ 417 (539)
+.+.++.+|++ +.+.++.+.++.++|+||||++++...|++.||+.|+..++.+ .|+.+|++..
T Consensus 853 l~~~~~~vl~~-~~~~i~~~~~ff~lGgdSL~a~~l~~~l~~~~~~~l~~~~i~~~~ti~~la~~l 917 (1389)
T TIGR03443 853 IRDLWLELLPN-RPATISPDDSFFDLGGHSILATRMIFELRKKLNVELPLGLIFKSPTIKGFAKEV 917 (1389)
T ss_pred HHHHHHHHhCC-CccccCcCcchhhcCccHHHHHHHHHHHHHHhCCCcCHHHHhcCCCHHHHHHHH
Confidence 56778889998 4577999999999999999999999999999999999999988 9999998854
No 32
>KOG1748|consensus
Probab=96.42 E-value=0.0021 Score=59.24 Aligned_cols=63 Identities=21% Similarity=0.384 Sum_probs=47.0
Q ss_pred HHHhHhCccCCCCCCCCCcc-cccCCchhhHHHHHHHHHhhcCcccCHHHHhh-hchhhhhhhhcC
Q psy11967 356 VIGDILGIQNITSISDSATL-SDLGLDSLMAADVKNVLQSKFNISLTNEQIKE-LKFNAVESLLKV 419 (539)
Q Consensus 356 ~va~Ilgi~~~~~i~~~~~L-~dlGmDSLM~vEi~q~ler~~~i~l~~~ei~~-lT~~kL~~~~~~ 419 (539)
.|-.-..| +++.+..+..+ .|||+|||=.|||-|+||++||+.+|.++=.. .|.++..+.-.+
T Consensus 61 VVk~~dki-~~~k~~~~s~f~~DLGlDSLD~VEiVMAlEEEFgiEIpd~dAdki~t~~da~~yI~~ 125 (131)
T KOG1748|consen 61 VVKKFDKI-DPSKLTTDSDFFKDLGLDSLDTVEIVMALEEEFGIEIPDEDADKIKTVRDAADYIAD 125 (131)
T ss_pred HHHHhhcC-CccccchhhHHHHhcCCcccccchhhhhhHHHhCCccCcchhhhhCCHHHHHHHHHh
Confidence 33344455 34445544443 69999999999999999999999999988888 778777765443
No 33
>TIGR01688 dltC D-alanine--poly(phosphoribitol) ligase, subunit 2. This protein is part of the teichoic acid operon in gram-positive organisms. Gram positive organisms incorporate teichoic acid in their cell walls, and in the fatty acid residues of the glycolipid component of the outer layer of the cytoplasmic membrane. This gene, dltC, encodes the alanyl carrier protein.
Probab=96.35 E-value=0.0045 Score=51.84 Aligned_cols=63 Identities=16% Similarity=0.302 Sum_probs=49.6
Q ss_pred hHHHHHhHhCccCCCCCCCCCcccccCC-chhhHHHHHHHHHhhcCcccCHHHHhhhchhhhhhh
Q psy11967 353 VQKVIGDILGIQNITSISDSATLSDLGL-DSLMAADVKNVLQSKFNISLTNEQIKELKFNAVESL 416 (539)
Q Consensus 353 ~~~~va~Ilgi~~~~~i~~~~~L~dlGm-DSLM~vEi~q~ler~~~i~l~~~ei~~lT~~kL~~~ 416 (539)
+++-++.+.|. +.-..+.+..|.+-|+ |||-.|++-..||.+|||.+|..++..-+|..+..+
T Consensus 4 i~eIL~~i~~~-~~~~~~~d~~L~~~GllDS~~~v~Li~~lE~ef~I~i~~~el~~enf~S~~~i 67 (73)
T TIGR01688 4 VLDILAEVTGS-DDVKENPDLELFEEGLLDSFGTVQLLLEIQNQFDIDVPISEFDRDEWDTPNKI 67 (73)
T ss_pred HHHHHHHHhcC-cccccCccHHHHHccchhHHHHHHHHHHHHHHhCCccCHHHcCHHHhcCHHHH
Confidence 44555666554 4445688999999997 999999999999999999999999987555444443
No 34
>PRK10252 entF enterobactin synthase subunit F; Provisional
Probab=96.05 E-value=0.0087 Score=72.21 Aligned_cols=67 Identities=21% Similarity=0.314 Sum_probs=60.1
Q ss_pred chHHHHHhHhCccCCCCCCCCCcccccCCchhhHHHHHHHHHhhcCcccCHHHHhh-hchhhhhhhhcCCC
Q psy11967 352 TVQKVIGDILGIQNITSISDSATLSDLGLDSLMAADVKNVLQSKFNISLTNEQIKE-LKFNAVESLLKVPK 421 (539)
Q Consensus 352 ~~~~~va~Ilgi~~~~~i~~~~~L~dlGmDSLM~vEi~q~ler~~~i~l~~~ei~~-lT~~kL~~~~~~~~ 421 (539)
.+.+..+.+||+ +.++.+.++.+||.|||+++++...|++.||+.++..++.+ .|+++|++......
T Consensus 982 ~l~~~~~~~l~~---~~~~~~~~ff~lGg~Sl~a~~l~~~l~~~~~~~l~~~~~~~~pti~~la~~l~~~~ 1049 (1296)
T PRK10252 982 IIAAAFSSLLGC---DVVDADADFFALGGHSLLAMKLAAQLSRQFARQVTPGQVMVASTVAKLATLLDAEE 1049 (1296)
T ss_pred HHHHHHHHHhCC---CCCCCCcCHHHcCCChHHHHHHHHHHHHHhCCCCCHHHHhcCCCHHHHHHHHhccc
Confidence 356778889998 37899999999999999999999999999999999999999 99999999876653
No 35
>PRK12467 peptide synthase; Provisional
Probab=94.15 E-value=0.063 Score=72.66 Aligned_cols=65 Identities=17% Similarity=0.340 Sum_probs=58.8
Q ss_pred chHHHHHhHhCccCCCCCCCCCcccccCCchhhHHHHHHHHHhhcCcccCHHHHhh-hchhhhhhhhcC
Q psy11967 352 TVQKVIGDILGIQNITSISDSATLSDLGLDSLMAADVKNVLQSKFNISLTNEQIKE-LKFNAVESLLKV 419 (539)
Q Consensus 352 ~~~~~va~Ilgi~~~~~i~~~~~L~dlGmDSLM~vEi~q~ler~~~i~l~~~ei~~-lT~~kL~~~~~~ 419 (539)
.+.+..+.+||+ +.|+.+.++.|||.|||+++++...|++.||+.++..+|-+ .|+++|+.....
T Consensus 3609 ~l~~i~~~vL~~---~~i~~~d~Ff~lGgdSl~a~~l~~~l~~~~g~~l~~~~lf~~pti~~la~~~~~ 3674 (3956)
T PRK12467 3609 QLAAIWADVLGV---EQVGVTDNFFELGGDSLLALQVLSRIRQSLGLKLSLRDLMSAPTIAELAGYSPL 3674 (3956)
T ss_pred HHHHHHHHHhCC---CCCCCCcchhcccchHHHHHHHHHHHHHHhCCCCCHHHHHhCCCHHHHHHHHhh
Confidence 456777888998 56899999999999999999999999999999999999999 999999987754
No 36
>PRK05691 peptide synthase; Validated
Probab=93.90 E-value=0.061 Score=73.30 Aligned_cols=63 Identities=19% Similarity=0.262 Sum_probs=57.0
Q ss_pred chHHHHHhHhCccCCCCCCCCCcccccCCchhhHHHHHHHHHhhcCcccCHHHHhh-hchhhhhhhh
Q psy11967 352 TVQKVIGDILGIQNITSISDSATLSDLGLDSLMAADVKNVLQSKFNISLTNEQIKE-LKFNAVESLL 417 (539)
Q Consensus 352 ~~~~~va~Ilgi~~~~~i~~~~~L~dlGmDSLM~vEi~q~ler~~~i~l~~~ei~~-lT~~kL~~~~ 417 (539)
.|.+..+.+||+ +.|+.+.+|.+||.||||++++...+++++|+.++..++-+ .|++.|++..
T Consensus 590 ~l~~~~~~vL~~---~~i~~~~~ff~lGgdSL~a~~l~~~l~~~~g~~l~v~~i~~~~ti~~la~~l 653 (4334)
T PRK05691 590 RIAAIWCEQLKV---EQVAADDHFFLLGGNSIAATQVVARLRDELGIDLNLRQLFEAPTLAAFSAAV 653 (4334)
T ss_pred HHHHHHHHHhCC---CCCCcCCchhhcccchHHHHHHHHHHHHHhCCcCchhhhhcccchHHHHHHH
Confidence 466778889998 57899999999999999999999999999999999999988 9999998754
No 37
>PRK12316 peptide synthase; Provisional
Probab=93.27 E-value=0.1 Score=72.10 Aligned_cols=65 Identities=18% Similarity=0.287 Sum_probs=58.4
Q ss_pred chHHHHHhHhCccCCCCCCCCCcccccCCchhhHHHHHHHHHhhcCcccCHHHHhh-hchhhhhhhhcC
Q psy11967 352 TVQKVIGDILGIQNITSISDSATLSDLGLDSLMAADVKNVLQSKFNISLTNEQIKE-LKFNAVESLLKV 419 (539)
Q Consensus 352 ~~~~~va~Ilgi~~~~~i~~~~~L~dlGmDSLM~vEi~q~ler~~~i~l~~~ei~~-lT~~kL~~~~~~ 419 (539)
.+.+..+.+|++ +.|+.+.++.+||.|||+++.+...|++++|+.|+..+|-+ .|+++|++....
T Consensus 5076 ~l~~i~~~vL~~---~~i~~~~~Ff~lGgdSl~a~~l~~~l~~~~g~~l~~~~lf~~pti~~la~~~~~ 5141 (5163)
T PRK12316 5076 QVAAIWAEVLQL---ERVGLDDNFFELGGHSLLAIQVTSRIQLELGLELPLRELFQTPTLAAFVELAAA 5141 (5163)
T ss_pred HHHHHHHHHhCC---CCCCCCCChhhccchHHHHHHHHHHHHHHcCCCCCHHHHHcCCCHHHHHHHHHh
Confidence 455677788987 56899999999999999999999999999999999999999 999999997654
No 38
>PRK12316 peptide synthase; Provisional
Probab=92.77 E-value=0.13 Score=71.32 Aligned_cols=65 Identities=15% Similarity=0.241 Sum_probs=58.3
Q ss_pred chHHHHHhHhCccCCCCCCCCCcccccCCchhhHHHHHHHHHhhcCcccCHHHHhh-hchhhhhhhhcC
Q psy11967 352 TVQKVIGDILGIQNITSISDSATLSDLGLDSLMAADVKNVLQSKFNISLTNEQIKE-LKFNAVESLLKV 419 (539)
Q Consensus 352 ~~~~~va~Ilgi~~~~~i~~~~~L~dlGmDSLM~vEi~q~ler~~~i~l~~~ei~~-lT~~kL~~~~~~ 419 (539)
.+.+..+.+|++ +.|+.+.++.+||.|||+++++...++++||+.++..++-+ .|+++|+.....
T Consensus 2520 ~l~~iw~~vL~~---~~i~~~d~Ff~lGgdSl~a~~l~~~~~~~~g~~l~~~~~f~~~ti~~la~~l~~ 2585 (5163)
T PRK12316 2520 RLAAIWQAVLKV---EQVGLDDHFFELGGHSLLATQVVSRVRQDLGLEVPLRILFERPTLAAFAASLES 2585 (5163)
T ss_pred HHHHHHHHHhCC---CccCCCCchhhhcchHHHHHHHHHHHHHHhCCCcCHHHHhhCccHHHHhhhhhh
Confidence 466778889998 56899999999999999999999999999999999999988 999999986544
No 39
>PRK12467 peptide synthase; Provisional
Probab=92.42 E-value=0.16 Score=69.04 Aligned_cols=67 Identities=15% Similarity=0.269 Sum_probs=60.1
Q ss_pred cchHHHHHhHhCccCCCCCCCCCcccccCCchhhHHHHHHHHHhhcCcccCHHHHhh-hchhhhhhhhcCC
Q psy11967 351 VTVQKVIGDILGIQNITSISDSATLSDLGLDSLMAADVKNVLQSKFNISLTNEQIKE-LKFNAVESLLKVP 420 (539)
Q Consensus 351 ~~~~~~va~Ilgi~~~~~i~~~~~L~dlGmDSLM~vEi~q~ler~~~i~l~~~ei~~-lT~~kL~~~~~~~ 420 (539)
..+.+..+.+||+ +.|+.+.++.+||.|||+++++...++++||+.++..+|-+ .|+++|++.....
T Consensus 1033 ~~l~~i~~~vL~~---~~i~~~d~Ff~lGgdSl~a~~l~~~~~~~~g~~l~~~~lf~~~t~~~la~~~~~~ 1100 (3956)
T PRK12467 1033 KRLAAIWADVLKV---ERVGLTDNFFELGGHSLLATQVISRVRQRLGIQVPLRTLFEHQTLAGFAQAVAAQ 1100 (3956)
T ss_pred HHHHHHHHHHhCC---CCCCCCCCchhccCccHHHHHHHHHHHHHhCCCcchHHhhccchHHHHHHHhhhh
Confidence 3466778889998 57899999999999999999999999999999999999999 9999999877654
No 40
>PRK05691 peptide synthase; Validated
Probab=91.93 E-value=0.2 Score=68.56 Aligned_cols=65 Identities=15% Similarity=0.269 Sum_probs=58.6
Q ss_pred chHHHHHhHhCccCCCCCCCCCcccccCCchhhHHHHHHHHHhhcCcccCHHHHhh-hchhhhhhhhcC
Q psy11967 352 TVQKVIGDILGIQNITSISDSATLSDLGLDSLMAADVKNVLQSKFNISLTNEQIKE-LKFNAVESLLKV 419 (539)
Q Consensus 352 ~~~~~va~Ilgi~~~~~i~~~~~L~dlGmDSLM~vEi~q~ler~~~i~l~~~ei~~-lT~~kL~~~~~~ 419 (539)
.|.+..+.+|++ +.|+.+.++.+||.|||+++++...+++.||+.++..+|-+ .|+++|++....
T Consensus 4245 ~l~~iw~~vL~~---~~i~~~d~Ff~lGg~Sl~a~~l~~~~~~~~~~~~~~~~~f~~~t~~~la~~~~~ 4310 (4334)
T PRK05691 4245 TLATIWADVLKV---ERVGVHDNFFELGGHSLLATQIASRVQKALQRNVPLRAMFECSTVEELAEYIEG 4310 (4334)
T ss_pred HHHHHHHHHhCC---CcCCCCCchhhcCCcHHHHHHHHHHHHHHhCCCccHHHHhcCCCHHHHHHHHhh
Confidence 355777888998 56899999999999999999999999999999999999999 999999998754
No 41
>COG3433 Aryl carrier domain [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=86.36 E-value=1.4 Score=37.08 Aligned_cols=67 Identities=22% Similarity=0.324 Sum_probs=53.2
Q ss_pred chHHHHHhHhCccCCCCCCCCCcccccCCchhhHHHHHHHHHhhcCcccCHHHHhh-hchhhhhhhhcCC
Q psy11967 352 TVQKVIGDILGIQNITSISDSATLSDLGLDSLMAADVKNVLQSKFNISLTNEQIKE-LKFNAVESLLKVP 420 (539)
Q Consensus 352 ~~~~~va~Ilgi~~~~~i~~~~~L~dlGmDSLM~vEi~q~ler~~~i~l~~~ei~~-lT~~kL~~~~~~~ 420 (539)
.|++.++.+++- +++.+++..+|-+.|+||+-.+-+...+. +-|..++-.++.. .|++.--++...+
T Consensus 2 ~Lr~~~~~Ll~e-~~~~l~dqeNLi~~GLDSiR~M~L~~~wR-~~G~~i~F~~La~~PTl~aW~qLl~~~ 69 (74)
T COG3433 2 ALREQIAELLGE-SVEELDDQENLIDYGLDSIRMMALLERWR-KRGADIDFAQLAANPTLAAWWQLLSTR 69 (74)
T ss_pred cHHHHHHHHHcC-ChhhcCchhhHHHhchhHHHHHHHHHHHH-HcCCcccHHHHHhCccHHHHHHHHHhc
Confidence 467889999998 78999999999999999987765555553 4577889888888 9988776665443
No 42
>TIGR02813 omega_3_PfaA polyketide-type polyunsaturated fatty acid synthase PfaA. Members of the seed for this alignment are involved in omega-3 polyunsaturated fatty acid biosynthesis, such as the protein PfaA from the eicosapentaenoic acid biosynthesis operon in Photobacterium profundum strain SS9. PfaA is encoded together with PfaB, PfaC, and PfaD, and the functions of the individual polypeptides have not yet been described. More distant homologs of PfaA, also included with the reach of this model, appear to be involved in polyketide-like biosynthetic mechanisms of polyunsaturated fatty acid biosynthesis, an alternative to the more familiar iterated mechanism of chain extension and desaturation, and in most cases are encoded near genes for homologs of PfaB, PfaC, and/or PfaD.
Probab=84.92 E-value=1.1 Score=58.76 Aligned_cols=66 Identities=20% Similarity=0.358 Sum_probs=57.7
Q ss_pred hHHHHHhHhCccCCCCCCCCCcc-cccCCchhhHHHHHHHHHhhcC--cccCHHHHhh-hchhhhhhhhcC
Q psy11967 353 VQKVIGDILGIQNITSISDSATL-SDLGLDSLMAADVKNVLQSKFN--ISLTNEQIKE-LKFNAVESLLKV 419 (539)
Q Consensus 353 ~~~~va~Ilgi~~~~~i~~~~~L-~dlGmDSLM~vEi~q~ler~~~--i~l~~~ei~~-lT~~kL~~~~~~ 419 (539)
+++.|+.-+|+ +.+.+..+..| .|||+||+..+||-..||.+|+ ..++.+++.+ -|+.++......
T Consensus 1312 vl~vvae~tgy-p~e~L~~d~~le~DLGiDSI~~vEil~~le~~f~~~~~i~~e~l~~l~Tl~div~~i~~ 1381 (2582)
T TIGR02813 1312 MLEVVADKTGY-PTEMLELEMDMEADLGIDSIKRVEILGTVQDTLPDLPELSPEDLAECRTLGEIVSYMQS 1381 (2582)
T ss_pred HHHHHHHHhCC-CHHHcCcccCchhhcCCCHHHHHHHHHHHHHhcCCcCCCChhHhhhcccHHHHHHHHhh
Confidence 55778888999 77889998888 7899999999999999999999 7889999888 799988876644
No 43
>PF14573 PP-binding_2: Acyl-carrier; PDB: 3CE7_A.
Probab=64.94 E-value=8.3 Score=33.82 Aligned_cols=43 Identities=16% Similarity=0.305 Sum_probs=29.2
Q ss_pred cccccCCchhhHHHHHHHHHhhcCcccCHHHHhh-hchhhhhhh
Q psy11967 374 TLSDLGLDSLMAADVKNVLQSKFNISLTNEQIKE-LKFNAVESL 416 (539)
Q Consensus 374 ~L~dlGmDSLM~vEi~q~ler~~~i~l~~~ei~~-lT~~kL~~~ 416 (539)
+--++-+|||=-||+-..+|+.|++.+|.+..-+ -|++++++.
T Consensus 40 t~e~r~wD~LDtVefvldVEe~F~V~IpDE~aDN~~tvqeIadf 83 (96)
T PF14573_consen 40 TKEDRAWDSLDTVEFVLDVEEEFDVTIPDETADNIKTVQEIADF 83 (96)
T ss_dssp BTTSSB--HHHHHHHHHHHHHHHT----HHHHTT--SHHHHHHH
T ss_pred cccccccchhhhHHHHHhHHHHcCcccCccccchhhHHHHHHHH
Confidence 3345678999999999999999999999987777 677777763
No 44
>PF08244 Glyco_hydro_32C: Glycosyl hydrolases family 32 C terminal; InterPro: IPR013189 This domain corresponds to the C-terminal domain of glycosyl hydrolase family 32. It forms a beta sandwich module [].; PDB: 2AEZ_A 2ADE_A 2ADD_A 1ST8_A 2AEY_A 1W2T_C 1UYP_A 3UGG_A 3UGH_B 3UGF_B ....
Probab=55.77 E-value=64 Score=26.76 Aligned_cols=72 Identities=19% Similarity=0.315 Sum_probs=43.8
Q ss_pred CCceEEEEeccCCCCCCCeEEEEeeEeCCCEEEEeceeCC------ccCcceeecCCCCCCcCC-CeEEEEEEEcCcEEE
Q psy11967 127 LVFRFAVNLVISGHDDDDIALHFNPRFDVNYCVRNSCRNK------VWGEEEKAAYVSNPFKLG-ENFVLEIFCAPSEFM 199 (539)
Q Consensus 127 ~a~rFsINL~~g~~p~~DIaLHfNpRF~~~~IVrNS~~~G------~WG~EEr~~~~~fPF~~G-~~F~I~I~~~~~~F~ 199 (539)
.+..|.+.|.........+.+.+++ ..+.++..-...| .|+...+. .|+..+ ...+|+|+++....+
T Consensus 7 ~~~~~g~~l~~s~~~~e~~~i~~d~--~~~~l~vDR~~s~~~~~~~~~~~~~~~----~~~~~~~~~l~L~i~vD~SsvE 80 (86)
T PF08244_consen 7 DADSFGLRLRASNDGGEETSIGYDP--ANGTLTVDRTNSGINDFSEEFGTFVRS----APLDLGDKILKLRIFVDRSSVE 80 (86)
T ss_dssp SECEEEEEEEEETTSSSEEEEEEET--TTTEEEEEETTSSTTSCCCEEEEEEEE----EETTTTESEEEEEEEEETTEEE
T ss_pred CCCCeEEEEEECCCccEEEEEEEEC--CCCEEEEeCCCCcccccccccCcceEE----eeccCCCCcEEEEEEEeCCEEE
Confidence 4578888887433223455555553 4566554443222 23332332 245443 456999999999999
Q ss_pred EEECC
Q psy11967 200 FAVNG 204 (539)
Q Consensus 200 I~VNG 204 (539)
|+|||
T Consensus 81 iFvNd 85 (86)
T PF08244_consen 81 IFVND 85 (86)
T ss_dssp EEETT
T ss_pred EEECC
Confidence 99997
No 45
>PF06439 DUF1080: Domain of Unknown Function (DUF1080); InterPro: IPR010496 This is a family of proteins of unknown function.; PDB: 3IMM_B 3NMB_A 3S5Q_A 3OSD_A 3HBK_A 3H3L_A 3U1X_A.
Probab=47.65 E-value=99 Score=28.74 Aligned_cols=58 Identities=19% Similarity=0.110 Sum_probs=40.6
Q ss_pred CCCCcCCCeEEEEEEEcCcEEEEEECCEEeEEecCCCC-----CCCeeEEEEe-cceEEEEEEE
Q psy11967 178 SNPFKLGENFVLEIFCAPSEFMFAVNGTHFCSFPYRYP-----LYTITRLQIL-PRVDIFKIQT 235 (539)
Q Consensus 178 ~fPF~~G~~F~I~I~~~~~~F~I~VNG~h~~~F~hRlp-----l~~I~~L~V~-GDV~v~sV~~ 235 (539)
...+..|+=.+++|.+..+.+.++|||+.+.+|.-... .+--=.|+.. +.+....|.+
T Consensus 121 ~~~~~~~~W~~~~I~~~g~~i~v~vnG~~v~~~~d~~~~~~~~~~G~Igl~~~~~~~~frNi~I 184 (185)
T PF06439_consen 121 NVAIPPGEWNTVRIVVKGNRITVWVNGKPVADFTDPSFPYSNPTKGPIGLQTHGSEVQFRNIKI 184 (185)
T ss_dssp --S--TTSEEEEEEEEETTEEEEEETTEEEEEEETTSHHHHHHSSBEEEEECSSSTEEEEEEEE
T ss_pred cccCCCCceEEEEEEEECCEEEEEECCEEEEEEEcCCCCCCCCCceEEEEEeCCCeEEEEEEEE
Confidence 46678999999999999999999999999999887764 4434444443 3445555544
No 46
>PF07377 DUF1493: Protein of unknown function (DUF1493); InterPro: IPR010862 This family consists of several bacterial proteins of around 115 residues in length. Members of this family are largely found in Salmonella and Yersinia species and several have been described as being putative cytoplasmic proteins. The function of this family is unknown.
Probab=46.95 E-value=31 Score=30.77 Aligned_cols=43 Identities=26% Similarity=0.416 Sum_probs=38.3
Q ss_pred CCCCCCCCCcc-cccCCchhhHHHHHHHHHhhcCcccCHHHHhh
Q psy11967 365 NITSISDSATL-SDLGLDSLMAADVKNVLQSKFNISLTNEQIKE 407 (539)
Q Consensus 365 ~~~~i~~~~~L-~dlGmDSLM~vEi~q~ler~~~i~l~~~ei~~ 407 (539)
....++.++.| .|||++.-.+.|+.....++|+|.++..++..
T Consensus 23 ~~~~it~dt~L~~DL~~~~dda~elm~~f~~~F~Vd~~~f~~~~ 66 (111)
T PF07377_consen 23 KKKPITPDTDLQEDLGLDGDDAEELMEDFFERFNVDLSDFDFDR 66 (111)
T ss_pred CcccCCCCCcHHHhcCCCHHHHHHHHHHHHHHhCCCcCccCHHH
Confidence 34788999999 78999999999999999999999998877755
No 47
>TIGR02813 omega_3_PfaA polyketide-type polyunsaturated fatty acid synthase PfaA. Members of the seed for this alignment are involved in omega-3 polyunsaturated fatty acid biosynthesis, such as the protein PfaA from the eicosapentaenoic acid biosynthesis operon in Photobacterium profundum strain SS9. PfaA is encoded together with PfaB, PfaC, and PfaD, and the functions of the individual polypeptides have not yet been described. More distant homologs of PfaA, also included with the reach of this model, appear to be involved in polyketide-like biosynthetic mechanisms of polyunsaturated fatty acid biosynthesis, an alternative to the more familiar iterated mechanism of chain extension and desaturation, and in most cases are encoded near genes for homologs of PfaB, PfaC, and/or PfaD.
Probab=44.55 E-value=28 Score=46.56 Aligned_cols=65 Identities=22% Similarity=0.360 Sum_probs=51.4
Q ss_pred chHHHHHhHhCccCCCCCCCCCcc-cccCCchhhHHHHHHHHHhhcCc--ccCHHHHhh-hchhhhhhhh
Q psy11967 352 TVQKVIGDILGIQNITSISDSATL-SDLGLDSLMAADVKNVLQSKFNI--SLTNEQIKE-LKFNAVESLL 417 (539)
Q Consensus 352 ~~~~~va~Ilgi~~~~~i~~~~~L-~dlGmDSLM~vEi~q~ler~~~i--~l~~~ei~~-lT~~kL~~~~ 417 (539)
.+++.|+..-|+ +.+.++.+..| +|||+||+..+||-.+|..++.. .+..+++.+ -|++++....
T Consensus 1413 ~~l~vvaekTGy-P~~mL~~~~dlEadLGIDSIk~vEil~~l~~~~p~~p~~~~~~la~~~Tl~~i~~~l 1481 (2582)
T TIGR02813 1413 TMMTVVADKTGY-PTEMLELEMDMEADLGIDSIKRVEILGTVQDTLPDLPELNPEDLAECRTLGEIVSYM 1481 (2582)
T ss_pred HHHHHHHHhhCC-CccccCcccccccccCcchhHHHHHHHHHHhhccCCcccChhhhcccccHHHHHHhh
Confidence 455778888888 88999999999 59999999999999999998753 455667777 5776666544
No 48
>COG4518 Mu-like prophage FluMu protein gp41 [Function unknown]
Probab=32.63 E-value=53 Score=29.83 Aligned_cols=42 Identities=14% Similarity=0.193 Sum_probs=31.3
Q ss_pred CchhhHHHH-HHHHHh--hcCcccCHHHHhhhchhhhhhhhcCCC
Q psy11967 380 LDSLMAADV-KNVLQS--KFNISLTNEQIKELKFNAVESLLKVPK 421 (539)
Q Consensus 380 mDSLM~vEi-~q~ler--~~~i~l~~~ei~~lT~~kL~~~~~~~~ 421 (539)
=++|||+|+ +-.++- +-...+|+.+|++||-.+|+.+.....
T Consensus 54 Sp~l~G~eLLrRQia~vG~i~GP~S~rqi~~Ls~rDl~rl~~~a~ 98 (122)
T COG4518 54 SPVLMGMELLRRQIAFVGNIQGPFSVRQILKLSSRDLARLQQKAR 98 (122)
T ss_pred ChHHHHHHHHHHHHHHHhcCCCCcCHHHHHhhhHHHHHHHHHHHH
Confidence 689999998 222222 456679999999999999998766544
No 49
>PF08766 DEK_C: DEK C terminal domain; InterPro: IPR014876 DEK is a chromatin associated protein that is linked with cancers and autoimmune disease. This domain is found at the C-terminal of DEK and is of clinical importance since it can reverse the characteristic abnormal DNA-mutagen sensitivity in fibroblasts from ataxia-telangiectasia (A-T) patients []. The structure of this domain shows it to be homologous to the E2F/DP transcription factor family []. This domain is also found in chitin synthase proteins like Q8TF96 from SWISSPROT, and in protein phosphatases such as Q6NN85 from SWISSPROT. ; PDB: 1Q1V_A.
Probab=31.34 E-value=43 Score=26.05 Aligned_cols=36 Identities=25% Similarity=0.527 Sum_probs=23.7
Q ss_pred chHHHHHhHhCccCCCCCCCCCcccccCCchhhHHHHHHHHHhhcCcccC
Q psy11967 352 TVQKVIGDILGIQNITSISDSATLSDLGLDSLMAADVKNVLQSKFNISLT 401 (539)
Q Consensus 352 ~~~~~va~Ilgi~~~~~i~~~~~L~dlGmDSLM~vEi~q~ler~~~i~l~ 401 (539)
.+..+|..||+= -+|+++-.-.|+..||.+||+.|+
T Consensus 4 ~i~~~i~~iL~~--------------~dl~~vT~k~vr~~Le~~~~~dL~ 39 (54)
T PF08766_consen 4 EIREAIREILRE--------------ADLDTVTKKQVREQLEERFGVDLS 39 (54)
T ss_dssp HHHHHHHHHHTT--------------S-GGG--HHHHHHHHHHH-SS--S
T ss_pred HHHHHHHHHHHh--------------CCHhHhhHHHHHHHHHHHHCCCcH
Confidence 355677777764 467788888899999999999998
No 50
>smart00640 Glyco_32 Glycosyl hydrolases family 32.
Probab=28.20 E-value=2.9e+02 Score=30.23 Aligned_cols=72 Identities=19% Similarity=0.202 Sum_probs=40.4
Q ss_pred ceEEEEeccCCCCCCCeEEEEeeEeCCCEEEEeceeCC-ccCcc---eeecCCCCCCcCCCeEEEEEEEcCcEEEEEECC
Q psy11967 129 FRFAVNLVISGHDDDDIALHFNPRFDVNYCVRNSCRNK-VWGEE---EKAAYVSNPFKLGENFVLEIFCAPSEFMFAVNG 204 (539)
Q Consensus 129 ~rFsINL~~g~~p~~DIaLHfNpRF~~~~IVrNS~~~G-~WG~E---Er~~~~~fPF~~G~~F~I~I~~~~~~F~I~VNG 204 (539)
.+|.+.|.+.........+.+++ ..+.++.+-...+ .+... .+.. ..++..++.++|+|+++....+|+||+
T Consensus 361 ~~~~l~~~~~~~~~~~~~i~~~~--~~~~l~vdR~~~~~~~~~~~~~~~~~--~~~~~~~~~~~lri~vD~ssvEvf~nd 436 (437)
T smart00640 361 GPFGLLVLASEDLSEQTAVYFDV--SKGTLCLDRRSSGTSNDEVFKGVRGA--TVPVDPGETLSLRILVDHSSVEIFANG 436 (437)
T ss_pred eeEEEEEEeCCCCCceEEEEEEc--CCeEEEEecCCCCCCcccccccceee--eeecCCCCeEEEEEEEeceEEEEEeCC
Confidence 46777775532111235555554 3344444332222 12211 2222 135556788999999999999999997
No 51
>PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A.
Probab=25.35 E-value=1.5e+02 Score=24.88 Aligned_cols=22 Identities=27% Similarity=0.446 Sum_probs=15.5
Q ss_pred CceeeeeccCCCCcEEEEeeec
Q psy11967 439 DDEKFINYKYDRGVSINTNDLS 460 (539)
Q Consensus 439 ~g~k~i~~gl~~G~~I~i~G~~ 460 (539)
+...+-.||++.|..|.+.-.-
T Consensus 63 d~~~L~~y~~~dg~~i~V~D~~ 84 (87)
T PF14560_consen 63 DDATLGSYGIKDGMRIHVVDTN 84 (87)
T ss_dssp SSSBCCHHT-STTEEEEEEE-T
T ss_pred CccEeecCCCCCCCEEEEEeCC
Confidence 4566667999999999987643
No 52
>cd01789 Alp11_N Ubiquitin-like domain of Alp11 tubulin-folding cofactor B. Alp11, also known as tubulin-folding cofactor B, is one of at least three proteins required for the proper folding of tubulins prior to their incorporation into microtubules. These cofactors are necessary for the biogenesis of microtubules and for cell viability. Alp11 has three domains including an N-terminal ubiquitin-like domain (represented by this CD) which executes the essential function, a central coiled-coil domain necessary for maintenance of cellular alpha-tubulin levels, and a C-terminal CLIP-170 domain is required for efficient binding to alpha-tubulin.
Probab=24.26 E-value=2.1e+02 Score=24.09 Aligned_cols=63 Identities=25% Similarity=0.425 Sum_probs=36.6
Q ss_pred HHhhcCcccCHHHHhhhchhhhhhhhcCCCceEEEEEeecCe--e--EEecCceeeeeccCCCCcEEEEeee
Q psy11967 392 LQSKFNISLTNEQIKELKFNAVESLLKVPKSFVMRILLKEDH--F--SVSIDDEKFINYKYDRGVSINTNDL 459 (539)
Q Consensus 392 ler~~~i~l~~~ei~~lT~~kL~~~~~~~~~F~~~i~~~~~~--F--~v~~~g~k~i~~gl~~G~~I~i~G~ 459 (539)
.|++|.-.|+.+++++ ||..+.+.. +..|++.+.+.. + .+.=+.+.+-.||+++|..|.+.-.
T Consensus 15 ~ekr~~~~~Tv~~lK~----kl~~~~G~~-~~~mrL~l~~~~~~~~~~l~~d~~~L~~y~~~dg~~IhVvD~ 81 (84)
T cd01789 15 FEKKYSRGLTIAELKK----KLELVVGTP-ASSMRLQLFDGDDKLVSKLDDDDALLGSYPVDDGCRIHVIDV 81 (84)
T ss_pred eeEecCCCCcHHHHHH----HHHHHHCCC-ccceEEEEEcCCCCeEeecCCCccEeeeccCCCCCEEEEEeC
Confidence 5666666666666666 444444432 333566443222 1 1223566677799999999987653
No 53
>KOG1178|consensus
Probab=22.99 E-value=62 Score=39.71 Aligned_cols=55 Identities=24% Similarity=0.185 Sum_probs=43.3
Q ss_pred CCCCCCCcccccCCchhhHHHHHHHHHhhcCcccCHHHHhh-hchhhhhhhhcCCC
Q psy11967 367 TSISDSATLSDLGLDSLMAADVKNVLQSKFNISLTNEQIKE-LKFNAVESLLKVPK 421 (539)
Q Consensus 367 ~~i~~~~~L~dlGmDSLM~vEi~q~ler~~~i~l~~~ei~~-lT~~kL~~~~~~~~ 421 (539)
..++++.++.++|.||+-+|-..+.|...+.+..+..-+-. +|+..+.......+
T Consensus 614 ~~~s~d~~fF~lGgdSi~av~~~~~lr~~~~v~~~~~l~~~l~ti~~~~~~~~~~~ 669 (1032)
T KOG1178|consen 614 AIVSPDSSFFQLGGDSISAVRLSGLLRKKGYVEGPLGLIFKLLTIVNLESGIIRIK 669 (1032)
T ss_pred cccCCCcchhhhcchhHHHHHHHHhhhhhheeccccccccchhhHHHHHHHHhhhh
Confidence 56899999999999999999999999999877777666655 66666665444433
No 54
>PF00874 PRD: PRD domain; InterPro: IPR011608 Transcriptional antiterminators and activators containing phosphoenolpyruvate: sugar phosphotransferase system (PTS) regulation domains (PRDs) form a class of bacterial regulatory proteins whose activity is modulated by phosphorylation. These regulators stimulate the expression of genes and operons involved in carbohydrate metabolism. PRD-containing proteins are involved in the regulation of catabolic operons in Gram+ and Gram- bacteria [, ] and are often characterised by a short N-terminal effector domain that binds to either RNA (CAT-RBD for antiterminators, IPR004341 from INTERPRO) or DNA (for activators), and a duplicated PRD module which is phosphorylated on conserved histidines by the sugar phosphotransferase system (PTS) in response to the availability of carbon source. The phosphorylations are thought to modify the stability of the dimeric proteins and thereby the RNA- or DNA-binding activity of the effector domain [, , ]. PRDs are characterised by the presence of a duplicated regulatory module of ~100 residues that can be reversibly phosphorylated on histidyl residues by the PTS. PRDs in transcriptional antiterminators and activators are PTS regulatory targets that are (de)phosphorylated in response to the availability of carbon sources [, , , , ]. The PRD domain comprises one and often two highly conserved histidines. It forms a compact bundle comprising five helices (alpha1-alpha5). The core of the PRD module consists of two pairs of antiparallel helices making an angle of ~60 degrees. The first pair contains the antiparallel helices alpha1 and alpha4, while the second pair contains alpha2 and alpha5. The third helix (alpha3) is oriented perpendicularly to alpha5 at the periphery of the bundle. The helices are connected by loops of varying length [, , ].; GO: 0006355 regulation of transcription, DNA-dependent; PDB: 1TLV_A 1H99_A 3GWH_A 3UFE_B 3RIO_A 3NUF_A.
Probab=22.04 E-value=85 Score=25.03 Aligned_cols=27 Identities=22% Similarity=0.533 Sum_probs=21.5
Q ss_pred hHHHHHHHHHhhcCcccCHHHHhhhch
Q psy11967 384 MAADVKNVLQSKFNISLTNEQIKELKF 410 (539)
Q Consensus 384 M~vEi~q~ler~~~i~l~~~ei~~lT~ 410 (539)
++.++.+.++++||+.+|..|+.-+|+
T Consensus 58 ~a~~~~~~l~~~~~i~~~~~Ei~yl~~ 84 (89)
T PF00874_consen 58 IAKEICERLEKRYGITLPDDEIAYLAL 84 (89)
T ss_dssp HHHHHHHHHHHHHTS-S-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHH
Confidence 467889999999999999999988654
No 55
>PF13592 HTH_33: Winged helix-turn helix
Probab=21.95 E-value=79 Score=24.97 Aligned_cols=24 Identities=4% Similarity=0.272 Sum_probs=21.2
Q ss_pred hHHHHHHHHHhhcCcccCHHHHhh
Q psy11967 384 MAADVKNVLQSKFNISLTNEQIKE 407 (539)
Q Consensus 384 M~vEi~q~ler~~~i~l~~~ei~~ 407 (539)
...+|++.|+++||+.++...++.
T Consensus 6 t~~~i~~~I~~~fgv~ys~~~v~~ 29 (60)
T PF13592_consen 6 TLKEIAAYIEEEFGVKYSPSGVYR 29 (60)
T ss_pred cHHHHHHHHHHHHCCEEcHHHHHH
Confidence 456899999999999999988887
No 56
>smart00469 WIF Wnt-inhibitory factor-1 like domain. Occurs as extracellular domain in metazoan Ryk receptor tyrosine kinases. C. elegans Ryk is required for cell-cuticle recognition. WIF-1 binds to Wnt and inhibits its activity.
Probab=20.95 E-value=1.2e+02 Score=28.68 Aligned_cols=58 Identities=17% Similarity=0.189 Sum_probs=40.9
Q ss_pred CceEEEEEeecCeeEEecCceeeeeccC-CCCcEEEEeeecCC-CCeeEEEEeecCCCCCC--eEEEEeeeeC
Q psy11967 421 KSFVMRILLKEDHFSVSIDDEKFINYKY-DRGVSINTNDLSAL-VFRFAVNLVISGHDDDD--IALHFNPRFD 489 (539)
Q Consensus 421 ~~F~~~i~~~~~~F~v~~~g~k~i~~gl-~~G~~I~i~G~~~~-~~rF~INl~~g~~~~~D--IAlHfNPRF~ 489 (539)
+.+.+.+.++..--.+ | +|-..|...|.+|+ ++-|+|.|-|.|+..+. |.++++.+++
T Consensus 57 ~~~~y~~~l~s~D~~v-----------l~~P~lnI~~~G~VP~~~~~f~V~l~CsG~~sa~~~V~l~l~~~~~ 118 (136)
T smart00469 57 EYVPYSLNVRSDDKEV-----------LPRPIVNISLLGTVPHTLQVFQVELKCSGKRDAEVEVTVIVEVSLG 118 (136)
T ss_pred eeeeeEEEEEeCCHHH-----------cCCCcccccccccCCCCcEEEEEEEEecCCcceEEEEEEEEEEeeC
Confidence 5677777776543322 2 36778888999987 79999999998865443 5666666665
Done!