RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11967
(539 letters)
>3zxf_A Galectin-7; sugar binding protein; 1.38A {Homo sapiens} PDB: 1bkz_A
2gal_A* 3gal_A* 4gal_A* 5gal_A* 3zxe_A*
Length = 138
Score = 109 bits (273), Expect = 2e-28
Identities = 33/105 (31%), Positives = 49/105 (46%), Gaps = 2/105 (1%)
Query: 130 RFAVNLVISGHDDDDIALHFNPRFDVNYCVRNSCRNKVWGEEEKAAYVSNPFKLGENFVL 189
RF VNL+ D ALHFNPR D + V NS WG EE+ PF+ G+ F +
Sbjct: 34 RFHVNLLCGEEQGSDAALHFNPRLDTSEVVFNSKEQGSWGREERGPG--VPFQRGQPFEV 91
Query: 190 EIFCAPSEFMFAVNGTHFCSFPYRYPLYTITRLQILPRVDIFKIQ 234
I + F V + F +R PL + +++ V + ++
Sbjct: 92 LIIASDDGFKAVVGDAQYHHFRHRLPLARVRLVEVGGDVQLDSVR 136
Score = 74.2 bits (182), Expect = 4e-16
Identities = 27/75 (36%), Positives = 35/75 (46%), Gaps = 3/75 (4%)
Query: 465 RFAVNLVISGHDDDDIALHFNPRFDVNYCVRNSCRNKVWGEEEKAAYVSNPFKLGENFVL 524
RF VNL+ D ALHFNPR D + V NS WG EE+ PF+ G+ F +
Sbjct: 34 RFHVNLLCGEEQGSDAALHFNPRLDTSEVVFNSKEQGSWGREERGPG--VPFQRGQPFEV 91
Query: 525 EIFCAPSEFMPVPIN 539
I + F +
Sbjct: 92 LIIASDDGFK-AVVG 105
Score = 29.5 bits (66), Expect = 1.6
Identities = 9/40 (22%), Positives = 16/40 (40%), Gaps = 6/40 (15%)
Query: 268 KVDVSGKVPK----FFINLQHGKLLWPHPNISFHTSVRFK 303
+ + G VP F +NL G+ + + H + R
Sbjct: 21 VLRIRGLVPPNASRFHVNLLCGEE--QGSDAALHFNPRLD 58
>1g86_A Charcot-leyden crystal protein; beta barrel, hydrolase; 1.80A {Homo
sapiens} SCOP: b.29.1.3 PDB: 1lcl_A 1qkq_A* 1hdk_A*
Length = 142
Score = 108 bits (270), Expect = 5e-28
Identities = 24/105 (22%), Positives = 42/105 (40%), Gaps = 3/105 (2%)
Query: 130 RFAVNLVISGHDDDDIALHFNPRFDVNYCVRNSCRNKVWGEEEKAAYVSNPFKLGENFVL 189
V+ ++ DI HF F V NS W ++ ++ PF+ G+ F L
Sbjct: 35 YLQVDFHTEMKEESDIVFHFQVCFG-RRVVMNSREYGAWKQQVESKN--MPFQDGQEFEL 91
Query: 190 EIFCAPSEFMFAVNGTHFCSFPYRYPLYTITRLQILPRVDIFKIQ 234
I P ++ VNG +F +R + +Q+ + + K
Sbjct: 92 SISVLPDKYQVMVNGQSSYTFDHRIKPEAVKMVQVWRDISLTKFN 136
Score = 71.9 bits (176), Expect = 3e-15
Identities = 17/70 (24%), Positives = 28/70 (40%), Gaps = 3/70 (4%)
Query: 465 RFAVNLVISGHDDDDIALHFNPRFDVNYCVRNSCRNKVWGEEEKAAYVSNPFKLGENFVL 524
V+ ++ DI HF F V NS W ++ ++ PF+ G+ F L
Sbjct: 35 YLQVDFHTEMKEESDIVFHFQVCFG-RRVVMNSREYGAWKQQVESKN--MPFQDGQEFEL 91
Query: 525 EIFCAPSEFM 534
I P ++
Sbjct: 92 SISVLPDKYQ 101
Score = 27.2 bits (60), Expect = 7.3
Identities = 4/28 (14%), Positives = 13/28 (46%)
Query: 421 KSFVMRILLKEDHFSVSIDDEKFINYKY 448
+ F + I + D + V ++ + + +
Sbjct: 87 QEFELSISVLPDKYQVMVNGQSSYTFDH 114
Score = 27.2 bits (60), Expect = 8.1
Identities = 6/34 (17%), Positives = 10/34 (29%), Gaps = 2/34 (5%)
Query: 270 DVSGKVPKFFINLQHGKLLWPHPNISFHTSVRFK 303
P ++ + +I FH V F
Sbjct: 28 VCFLNEPYLQVDFHTE--MKEESDIVFHFQVCFG 59
>2wsu_A Putative fiber protein; viral protein, carbohydrate recognition
domain, tandem-repea; 1.90A {Porcine adenovirus 4} PDB:
2wsv_A* 2wt0_A* 2wt1_A* 2wt2_A*
Length = 343
Score = 112 bits (280), Expect = 2e-27
Identities = 43/196 (21%), Positives = 71/196 (36%), Gaps = 22/196 (11%)
Query: 130 RFAVNLVISGHDDDDIALHFNPRFDV---NYCVRNSC-RNKVWGEEEKAAYVSNPFKLGE 185
F ++L +ALHFN R + + V NS + WGEE + PF+ +
Sbjct: 60 FFTLDL---VTGPASLALHFNVRLPLEGEKHIVCNSREGSSNWGEEVRPQE--FPFEREK 114
Query: 186 NFVLEIFCAPSEFMFAVNGTHFCSFPYRYPLYTITRLQILPRVDIFKIQTKLLHSYPATT 245
FVL I + VNG FP R ITR + + ++ TT
Sbjct: 115 PFVLVIVIQSDTYQITVNGKPLVDFPQRLQ--GITRASLSGDLVFTRLTMYPPGDPRPTT 172
Query: 246 QDDLVAQ---LKDQPLYHHHVLGYE---KVDVSGKVPK----FFINLQHGKLLWPHPNIS 295
A + + G + V+G F +NL + + N++
Sbjct: 173 LLPPPAAPLDVIPDAYVLNLPTGLTPRTLLTVTGTPTPLAEFFIVNLVYDL-HYDSKNVA 231
Query: 296 FHTSVRFKYKAESNVT 311
H +V F ++ ++
Sbjct: 232 LHFNVGFTSDSKGHIA 247
Score = 95.7 bits (237), Expect = 9e-22
Identities = 31/110 (28%), Positives = 47/110 (42%), Gaps = 7/110 (6%)
Query: 130 RFAVNLVIS-GHDDDDIALHFNPRFD---VNYCVRNSCRNKVWGEEEKAAYVSNPFKLGE 185
F VNLV +D ++ALHFN F + N+ N WG E + PF+ G+
Sbjct: 214 FFIVNLVYDLHYDSKNVALHFNVGFTSDSKGHIACNARMNGTWGSEITVSD--FPFQRGK 271
Query: 186 NFVLEIFCAPSEFMFAVNGTHFCSFPYRYP-LYTITRLQILPRVDIFKIQ 234
F L+I ++F V+ F YR L I + + V ++
Sbjct: 272 PFTLQILTREADFQVLVDKQPLTQFQYRLKELDQIKYVHMFGHVVQTHLE 321
Score = 64.5 bits (156), Expect = 2e-11
Identities = 24/74 (32%), Positives = 35/74 (47%), Gaps = 6/74 (8%)
Query: 465 RFAVNLVIS-GHDDDDIALHFNPRFD---VNYCVRNSCRNKVWGEEEKAAYVSNPFKLGE 520
F VNLV +D ++ALHFN F + N+ N WG E + PF+ G+
Sbjct: 214 FFIVNLVYDLHYDSKNVALHFNVGFTSDSKGHIACNARMNGTWGSEITVSD--FPFQRGK 271
Query: 521 NFVLEIFCAPSEFM 534
F L+I ++F
Sbjct: 272 PFTLQILTREADFQ 285
Score = 61.4 bits (148), Expect = 2e-10
Identities = 22/79 (27%), Positives = 34/79 (43%), Gaps = 10/79 (12%)
Query: 465 RFAVNLVISGHDDDDIALHFNPRFDV---NYCVRNSC-RNKVWGEEEKAAYVSNPFKLGE 520
F ++L +ALHFN R + + V NS + WGEE + PF+ +
Sbjct: 60 FFTLDL---VTGPASLALHFNVRLPLEGEKHIVCNSREGSSNWGEEVRPQE--FPFEREK 114
Query: 521 NFVLEIFCAPSEFMPVPIN 539
FVL I + + +N
Sbjct: 115 PFVLVIVIQSDTYQ-ITVN 132
>1a78_A Galectin-1; S-lectin, carbohydrate binding, complex
(lectin/saccharide); HET: TDG; 2.00A {Bufo arenarum}
SCOP: b.29.1.3 PDB: 1gan_A*
Length = 134
Score = 102 bits (256), Expect = 3e-26
Identities = 31/99 (31%), Positives = 43/99 (43%), Gaps = 9/99 (9%)
Query: 130 RFAVNLVISGHDDDDIALHFNPRFDV----NYCVRNSCRNKVWGEEEKAAYVSNPFKLGE 185
FAVNL G D + LHFN RFD+ N V NS WG E++ PF+ G
Sbjct: 30 GFAVNL---GEDASNFLLHFNARFDLHGDVNKIVCNSKEADAWGSEQREEV--FPFQQGA 84
Query: 186 NFVLEIFCAPSEFMFAVNGTHFCSFPYRYPLYTITRLQI 224
++ + + + SFP R L +I L +
Sbjct: 85 EVMVCFEYQTQKIIIKFSSGDQFSFPVRKVLPSIPFLSL 123
Score = 69.2 bits (169), Expect = 2e-14
Identities = 24/79 (30%), Positives = 35/79 (44%), Gaps = 10/79 (12%)
Query: 465 RFAVNLVISGHDDDDIALHFNPRFDV----NYCVRNSCRNKVWGEEEKAAYVSNPFKLGE 520
FAVNL G D + LHFN RFD+ N V NS WG E++ PF+ G
Sbjct: 30 GFAVNL---GEDASNFLLHFNARFDLHGDVNKIVCNSKEADAWGSEQREEV--FPFQQGA 84
Query: 521 NFVLEIFCAPSEFMPVPIN 539
++ + + + +
Sbjct: 85 EVMVCFEYQTQKII-IKFS 102
Score = 31.0 bits (70), Expect = 0.42
Identities = 0/28 (0%), Positives = 6/28 (21%)
Query: 421 KSFVMRILLKEDHFSVSIDDEKFINYKY 448
++ + + ++
Sbjct: 84 AEVMVCFEYQTQKIIIKFSSGDQFSFPV 111
Score = 29.1 bits (65), Expect = 1.9
Identities = 11/46 (23%), Positives = 17/46 (36%), Gaps = 9/46 (19%)
Query: 268 KVDVSGKVPK----FFINLQHGKLLWPHPNISFHTSVRFKYKAESN 309
V++ G +P F +NL N H + RF + N
Sbjct: 17 CVEIKGSIPPDCKGFAVNLGEDA-----SNFLLHFNARFDLHGDVN 57
>3naj_A Galectin-8; sugar binding protein; HET: GAL BGC; 2.80A {Homo
sapiens} PDB: 3ojb_A
Length = 291
Score = 107 bits (267), Expect = 4e-26
Identities = 48/180 (26%), Positives = 67/180 (37%), Gaps = 15/180 (8%)
Query: 130 RFAVNLVI--SGHDDDDIALHFNPRFD-VNYCVRNSCRNKVWGEEEKAAYVSNPFKLGEN 186
RF V+L S D+A HFNPRF V N+ N+ WG EE PFK ++
Sbjct: 45 RFQVDLQNGSSMKPRADVAFHFNPRFKRAGCIVCNTLINEKWGREEITYD--TPFKREKS 102
Query: 187 FVLEIFCAPSEFMFAVNGTHFCSFPYRYPLYTITRLQILPRVDIFKIQTKLLHSYPATTQ 246
F + I +F AVNG H + +R I L I +V+I I
Sbjct: 103 FEIVIMVLKDKFQVAVNGKHTLLYGHRIGPEKIDTLGIYGKVNIHSIGFSFSSHMRLPFA 162
Query: 247 DDLVAQLKDQPLYHHHVLGYEKVDVSGKVPKFFINLQHGKLLWPHPNISFHTSVRFKYKA 306
L + V+ F ++L G +I+ H + R KA
Sbjct: 163 ARLNTPMGPGRTVVVKGE------VNANAKSFNVDLLAG----KSKDIALHLNPRLNIKA 212
Score = 97.1 bits (241), Expect = 1e-22
Identities = 39/107 (36%), Positives = 58/107 (54%), Gaps = 4/107 (3%)
Query: 130 RFAVNLVISGHDDDDIALHFNPRFDVNYCVRNSCRNKVWGEEEKAAYVSNPFKLGENFVL 189
F V+L+ DIALH NPR ++ VRNS + WGEEE+ S PF G F +
Sbjct: 187 SFNVDLL--AGKSKDIALHLNPRLNIKAFVRNSFLQESWGEEERNIT-SFPFSPGMYFEM 243
Query: 190 EIFCAPSEFMFAVNGTHFCSFPYRYP-LYTITRLQILPRVDIFKIQT 235
I+C EF AVNG H + +R+ L +I L+I + + ++++
Sbjct: 244 IIYCDVREFKVAVNGVHSLEYKHRFKELSSIDTLEINGDIHLLEVRS 290
Score = 64.4 bits (156), Expect = 2e-11
Identities = 38/155 (24%), Positives = 58/155 (37%), Gaps = 45/155 (29%)
Query: 421 KSFVMRILLKEDHFSVSIDDEKFINYKYD------RGVSINTNDLSALVF---------- 464
KSF + I++ +D F V+++ + + Y + + I +
Sbjct: 101 KSFEIVIMVLKDKFQVAVNGKHTLLYGHRIGPEKIDTLGIYGKVNIHSIGFSFSSHMRLP 160
Query: 465 --------------------------RFAVNLVISGHDDDDIALHFNPRFDVNYCVRNSC 498
F V+L+ DIALH NPR ++ VRNS
Sbjct: 161 FAARLNTPMGPGRTVVVKGEVNANAKSFNVDLL--AGKSKDIALHLNPRLNIKAFVRNSF 218
Query: 499 RNKVWGEEEKAAYVSNPFKLGENFVLEIFCAPSEF 533
+ WGEEE+ S PF G F + I+C EF
Sbjct: 219 LQESWGEEERNIT-SFPFSPGMYFEMIIYCDVREF 252
Score = 62.8 bits (152), Expect = 5e-11
Identities = 28/78 (35%), Positives = 37/78 (47%), Gaps = 6/78 (7%)
Query: 465 RFAVNLVI--SGHDDDDIALHFNPRFD-VNYCVRNSCRNKVWGEEEKAAYVSNPFKLGEN 521
RF V+L S D+A HFNPRF V N+ N+ WG EE PFK ++
Sbjct: 45 RFQVDLQNGSSMKPRADVAFHFNPRFKRAGCIVCNTLINEKWGREEITYD--TPFKREKS 102
Query: 522 FVLEIFCAPSEFMPVPIN 539
F + I +F V +N
Sbjct: 103 FEIVIMVLKDKFQ-VAVN 119
Score = 29.3 bits (65), Expect = 2.9
Identities = 7/28 (25%), Positives = 12/28 (42%)
Query: 421 KSFVMRILLKEDHFSVSIDDEKFINYKY 448
F M I F V+++ + YK+
Sbjct: 239 MYFEMIIYCDVREFKVAVNGVHSLEYKH 266
>3nv1_A Galectin-9, galectin 9 short isoform variant; sugar binding, sugar
binding protein; 1.50A {Homo sapiens} PDB: 3nv2_A*
3nv3_A* 3nv4_A*
Length = 138
Score = 101 bits (254), Expect = 9e-26
Identities = 38/107 (35%), Positives = 55/107 (51%), Gaps = 5/107 (4%)
Query: 130 RFAVNLVISGHDDDDIALHFNPRFDVNYCVRNSCRNKVWGEEEKAAYVSNPFKLGENFVL 189
RF +NL + IA H NPRFD N VRN+ + WG EE++ PF G++F +
Sbjct: 36 RFHINLC----SGNHIAFHLNPRFDENAVVRNTQIDNSWGSEERSLPRKMPFVRGQSFSV 91
Query: 190 EIFCAPSEFMFAVNGTHFCSFPYRY-PLYTITRLQILPRVDIFKIQT 235
I C AV+G H + +R L TI RL++ + + +QT
Sbjct: 92 WILCEAHCLKVAVDGQHLFEYYHRLRNLPTINRLEVGGDIQLTHVQT 138
Score = 66.1 bits (161), Expect = 3e-13
Identities = 26/70 (37%), Positives = 35/70 (50%), Gaps = 4/70 (5%)
Query: 465 RFAVNLVISGHDDDDIALHFNPRFDVNYCVRNSCRNKVWGEEEKAAYVSNPFKLGENFVL 524
RF +NL + IA H NPRFD N VRN+ + WG EE++ PF G++F +
Sbjct: 36 RFHINLC----SGNHIAFHLNPRFDENAVVRNTQIDNSWGSEERSLPRKMPFVRGQSFSV 91
Query: 525 EIFCAPSEFM 534
I C
Sbjct: 92 WILCEAHCLK 101
Score = 27.2 bits (60), Expect = 8.5
Identities = 7/28 (25%), Positives = 14/28 (50%)
Query: 421 KSFVMRILLKEDHFSVSIDDEKFINYKY 448
+SF + IL + V++D + Y +
Sbjct: 87 QSFSVWILCEAHCLKVAVDGQHLFEYYH 114
>2d6m_A Galectin-9, lectin, galactose binding, soluble 9; beta sandwich,
carbohydrate binding protein, sugar binding protein;
HET: LBT; 1.60A {Mus musculus} PDB: 2d6l_X 2d6k_A*
2d6n_A* 2d6p_A* 2d6o_X*
Length = 159
Score = 101 bits (253), Expect = 2e-25
Identities = 36/116 (31%), Positives = 55/116 (47%), Gaps = 4/116 (3%)
Query: 130 RFAVNLVISGHDDDDIALHFNPRFDVNYC-VRNSCRNKVWGEEEKAAYVSNPFKLGENFV 188
RF VN + + +DIA HFNPRF+ V N+ +N WG EE+ + PF+ G F
Sbjct: 45 RFVVNFQ-NSFNGNDIAFHFNPRFEEGGYVVCNTKQNGQWGPEER--KMQMPFQKGMPFE 101
Query: 189 LEIFCAPSEFMFAVNGTHFCSFPYRYPLYTITRLQILPRVDIFKIQTKLLHSYPAT 244
L SEF VN F + +R P + + + + + + I + + PA
Sbjct: 102 LCFLVQRSEFKVMVNKKFFVQYQHRVPYHLVDTIAVSGCLKLSFITFQTQNFRPAH 157
Score = 66.6 bits (162), Expect = 3e-13
Identities = 30/76 (39%), Positives = 40/76 (52%), Gaps = 5/76 (6%)
Query: 465 RFAVNLVISGHDDDDIALHFNPRFDVNYC-VRNSCRNKVWGEEEKAAYVSNPFKLGENFV 523
RF VN + + +DIA HFNPRF+ V N+ +N WG EE+ + PF+ G F
Sbjct: 45 RFVVNFQ-NSFNGNDIAFHFNPRFEEGGYVVCNTKQNGQWGPEER--KMQMPFQKGMPFE 101
Query: 524 LEIFCAPSEFMPVPIN 539
L SEF V +N
Sbjct: 102 LCFLVQRSEFK-VMVN 116
Score = 31.9 bits (72), Expect = 0.29
Identities = 10/42 (23%), Positives = 19/42 (45%), Gaps = 7/42 (16%)
Query: 268 KVDVSGKVP----KFFINLQHGKLLWPHPNISFHTSVRFKYK 305
+V + G +F +N Q+ +I+FH + RF+
Sbjct: 32 QVTLQGTTKSFAQRFVVNFQNSF---NGNDIAFHFNPRFEEG 70
>2zhn_A Galectin-9; beta sandwich, carbohydrate binding protein, sugar
protein; HET: NAG GAL; 1.30A {Homo sapiens} PDB: 2eak_A*
2eal_A* 2zhk_A* 2zhm_A* 2zhl_A* 2yy1_A* 3lsd_A 3lse_A*
Length = 148
Score = 101 bits (252), Expect = 2e-25
Identities = 37/105 (35%), Positives = 53/105 (50%), Gaps = 4/105 (3%)
Query: 130 RFAVNLVISGHDDDDIALHFNPRFDVNYC-VRNSCRNKVWGEEEKAAYVSNPFKLGENFV 188
RFAVN +G +DIA HFNPRF+ V N+ +N WG EE+ + PF+ G F
Sbjct: 44 RFAVNFQ-TGFSGNDIAFHFNPRFEDGGYVVCNTRQNGSWGPEERKTH--MPFQKGMPFD 100
Query: 189 LEIFCAPSEFMFAVNGTHFCSFPYRYPLYTITRLQILPRVDIFKI 233
L S+F VNG F + +R P + + + + V + I
Sbjct: 101 LCFLVQSSDFKVMVNGILFVQYFHRVPFHRVDTISVNGSVQLSYI 145
Score = 65.7 bits (160), Expect = 5e-13
Identities = 29/71 (40%), Positives = 38/71 (53%), Gaps = 4/71 (5%)
Query: 465 RFAVNLVISGHDDDDIALHFNPRFDVNYC-VRNSCRNKVWGEEEKAAYVSNPFKLGENFV 523
RFAVN +G +DIA HFNPRF+ V N+ +N WG EE+ + PF+ G F
Sbjct: 44 RFAVNFQ-TGFSGNDIAFHFNPRFEDGGYVVCNTRQNGSWGPEERKTH--MPFQKGMPFD 100
Query: 524 LEIFCAPSEFM 534
L S+F
Sbjct: 101 LCFLVQSSDFK 111
Score = 29.9 bits (67), Expect = 0.94
Identities = 12/41 (29%), Positives = 20/41 (48%), Gaps = 8/41 (19%)
Query: 268 KVDVSGKVPK-----FFINLQHGKLLWPHPNISFHTSVRFK 303
++ V+G V F +N Q G +I+FH + RF+
Sbjct: 30 QITVNGTVLSSSGTRFAVNFQTGF---SGNDIAFHFNPRFE 67
>1w6n_A Galectin-1; carbohydrate-binding proteins, galactosides; 1.65A
{Homo sapiens} SCOP: b.29.1.3 PDB: 1w6m_A 1w6o_A*
1w6p_A* 3t2t_A* 1gzw_A* 2km2_A 3oy8_A* 3oyw_A* 1w6q_A
2zkn_A* 3m2m_A* 1slt_A* 1sla_A* 1slb_A* 1slc_A*
Length = 134
Score = 100 bits (250), Expect = 3e-25
Identities = 30/108 (27%), Positives = 45/108 (41%), Gaps = 9/108 (8%)
Query: 130 RFAVNLVISGHDDDDIALHFNPRFDV----NYCVRNSCRNKVWGEEEKAAYVSNPFKLGE 185
F +NL G D +++ LHFNPRF+ N V NS + WG E++ A PF+ G
Sbjct: 29 SFVLNL---GKDSNNLCLHFNPRFNAHGDANTIVCNSKDDGAWGTEQREA--VFPFQPGS 83
Query: 186 NFVLEIFCAPSEFMFAVNGTHFCSFPYRYPLYTITRLQILPRVDIFKI 233
+ I + + + FP R L I + I +
Sbjct: 84 VAEVCITFDQANLTVKLPDGYEFKFPNRLNLEAINYMAADGDFKIKCV 131
Score = 65.3 bits (159), Expect = 5e-13
Identities = 24/74 (32%), Positives = 35/74 (47%), Gaps = 9/74 (12%)
Query: 465 RFAVNLVISGHDDDDIALHFNPRFDV----NYCVRNSCRNKVWGEEEKAAYVSNPFKLGE 520
F +NL G D +++ LHFNPRF+ N V NS + WG E++ A PF+ G
Sbjct: 29 SFVLNL---GKDSNNLCLHFNPRFNAHGDANTIVCNSKDDGAWGTEQREA--VFPFQPGS 83
Query: 521 NFVLEIFCAPSEFM 534
+ I +
Sbjct: 84 VAEVCITFDQANLT 97
Score = 28.7 bits (64), Expect = 2.4
Identities = 11/48 (22%), Positives = 18/48 (37%), Gaps = 9/48 (18%)
Query: 268 KVDVSGKVPK----FFINLQHGKLLWPHPNISFHTSVRFKYKAESNVT 311
+ V G+V F +NL N+ H + RF ++N
Sbjct: 16 CLRVRGEVAPDAKSFVLNLGKDS-----NNLCLHFNPRFNAHGDANTI 58
>3i8t_A Galectin-4; S-type lectin, carbohydrate binding, molecular
recognition, sugar binding protein; HET: LBT; 2.10A {Mus
musculus} PDB: 2dyc_A
Length = 164
Score = 100 bits (251), Expect = 4e-25
Identities = 37/106 (34%), Positives = 56/106 (52%), Gaps = 3/106 (2%)
Query: 130 RFAVNLVISGHDDDDIALHFNPRFD-VNYCVRNSCRNKVWGEEEKAAYVSNPFKLGENFV 188
RF VN + D D+A HFNPRFD + V N+ ++ WG+EEK PF+ G++F
Sbjct: 57 RFHVNFAVGQDDGADVAFHFNPRFDGWDKVVFNTMQSGQWGKEEKKKS--MPFQKGKHFE 114
Query: 189 LEIFCAPSEFMFAVNGTHFCSFPYRYPLYTITRLQILPRVDIFKIQ 234
L P + VNG F + +R P+ +T LQ+ +++ I
Sbjct: 115 LVFMVMPEHYKVVVNGNSFYEYGHRLPVQMVTHLQVDGDLELQSIN 160
Score = 68.5 bits (167), Expect = 8e-14
Identities = 27/71 (38%), Positives = 38/71 (53%), Gaps = 3/71 (4%)
Query: 465 RFAVNLVISGHDDDDIALHFNPRFD-VNYCVRNSCRNKVWGEEEKAAYVSNPFKLGENFV 523
RF VN + D D+A HFNPRFD + V N+ ++ WG+EEK PF+ G++F
Sbjct: 57 RFHVNFAVGQDDGADVAFHFNPRFDGWDKVVFNTMQSGQWGKEEKKKS--MPFQKGKHFE 114
Query: 524 LEIFCAPSEFM 534
L P +
Sbjct: 115 LVFMVMPEHYK 125
Score = 30.8 bits (69), Expect = 0.56
Identities = 9/39 (23%), Positives = 17/39 (43%), Gaps = 6/39 (15%)
Query: 269 VDVSGKVPK----FFINLQHGKLLWPHPNISFHTSVRFK 303
V + G + F +N G+ +++FH + RF
Sbjct: 45 VYIQGMAKENMRRFHVNFAVGQD--DGADVAFHFNPRFD 81
Score = 28.5 bits (63), Expect = 3.7
Identities = 6/28 (21%), Positives = 14/28 (50%)
Query: 421 KSFVMRILLKEDHFSVSIDDEKFINYKY 448
K F + ++ +H+ V ++ F Y +
Sbjct: 111 KHFELVFMVMPEHYKVVVNGNSFYEYGH 138
>2yro_A Galectin-8; GAL-BIND lectin, sugar binding, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 155
Score = 100 bits (250), Expect = 4e-25
Identities = 39/106 (36%), Positives = 57/106 (53%), Gaps = 4/106 (3%)
Query: 130 RFAVNLVISGHDDDDIALHFNPRFDVNYCVRNSCRNKVWGEEEKAAYVSNPFKLGENFVL 189
F V+L+ DIALH NPR ++ VRNS + WGEEE+ S PF G F +
Sbjct: 45 SFNVDLL--AGKSKDIALHLNPRLNIKAFVRNSFLQESWGEEERNIT-SFPFSPGMYFEM 101
Query: 190 EIFCAPSEFMFAVNGTHFCSFPYRYP-LYTITRLQILPRVDIFKIQ 234
I+C EF AVNG H + +R+ L +I L+I + + +++
Sbjct: 102 IIYCDVREFKVAVNGVHSLEYKHRFKELSSIDTLEINGDIHLLEVR 147
Score = 68.1 bits (166), Expect = 1e-13
Identities = 31/75 (41%), Positives = 40/75 (53%), Gaps = 4/75 (5%)
Query: 465 RFAVNLVISGHDDDDIALHFNPRFDVNYCVRNSCRNKVWGEEEKAAYVSNPFKLGENFVL 524
F V+L+ DIALH NPR ++ VRNS + WGEEE+ S PF G F +
Sbjct: 45 SFNVDLL--AGKSKDIALHLNPRLNIKAFVRNSFLQESWGEEERNIT-SFPFSPGMYFEM 101
Query: 525 EIFCAPSEFMPVPIN 539
I+C EF V +N
Sbjct: 102 IIYCDVREFK-VAVN 115
Score = 29.6 bits (66), Expect = 1.4
Identities = 11/42 (26%), Positives = 17/42 (40%), Gaps = 8/42 (19%)
Query: 268 KVDVSGKVPK----FFINLQHGKLLWPHPNISFHTSVRFKYK 305
V V G+V F ++L G +I+ H + R K
Sbjct: 32 TVVVKGEVNANAKSFNVDLLAG----KSKDIALHLNPRLNIK 69
Score = 28.0 bits (62), Expect = 4.9
Identities = 7/28 (25%), Positives = 12/28 (42%)
Query: 421 KSFVMRILLKEDHFSVSIDDEKFINYKY 448
F M I F V+++ + YK+
Sbjct: 97 MYFEMIIYCDVREFKVAVNGVHSLEYKH 124
>1x50_A Galectin-4; GAL-BIND lectin, sugar binding, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 164
Score = 100 bits (249), Expect = 7e-25
Identities = 39/106 (36%), Positives = 47/106 (44%), Gaps = 4/106 (3%)
Query: 130 RFAVNLVISGHDDDDIALHFNPRFDVNYCVRNSCRNKVWGEEEKAAYVSNPFKLGENFVL 189
FA+N + DIALH NPR VRNS N WG EEK NPF G+ F L
Sbjct: 55 SFAINFKV--GSSGDIALHINPRMGNGTVVRNSLLNGSWGSEEKKIT-HNPFGPGQFFDL 111
Query: 190 EIFCAPSEFMFAVNGTHFCSFPYRY-PLYTITRLQILPRVDIFKIQ 234
I C F NG H F +R + L+I V + +Q
Sbjct: 112 SIRCGLDRFKVYANGQHLFDFAHRLSAFQRVDTLEIQGDVTLSYVQ 157
Score = 68.5 bits (167), Expect = 8e-14
Identities = 30/70 (42%), Positives = 33/70 (47%), Gaps = 3/70 (4%)
Query: 465 RFAVNLVISGHDDDDIALHFNPRFDVNYCVRNSCRNKVWGEEEKAAYVSNPFKLGENFVL 524
FA+N + DIALH NPR VRNS N WG EEK NPF G+ F L
Sbjct: 55 SFAINFKV--GSSGDIALHINPRMGNGTVVRNSLLNGSWGSEEKKIT-HNPFGPGQFFDL 111
Query: 525 EIFCAPSEFM 534
I C F
Sbjct: 112 SIRCGLDRFK 121
Score = 28.4 bits (63), Expect = 4.2
Identities = 10/40 (25%), Positives = 16/40 (40%), Gaps = 8/40 (20%)
Query: 268 KVDVSGKVPK----FFINLQHGKLLWPHPNISFHTSVRFK 303
+ + G VP F IN + G +I+ H + R
Sbjct: 42 TIIIKGYVPPTGKSFAINFKVG----SSGDIALHINPRMG 77
>1hlc_A Human lectin; HET: GAL BGC; 2.90A {Homo sapiens} SCOP: b.29.1.3
Length = 129
Score = 96.9 bits (241), Expect = 4e-24
Identities = 26/105 (24%), Positives = 43/105 (40%), Gaps = 5/105 (4%)
Query: 130 RFAVNLVISGHDDDDIALHFNPRFDVNYCVRNSCRNKVWGEEEKAAYVSNPFKLGENFVL 189
F +NL G D + LHFNPRF + V NS WG+E++ + F G
Sbjct: 27 GFVINL---GQGTDKLNLHFNPRFSESTIVCNSLDGSNWGQEQREDH--LCFSPGSEVKF 81
Query: 190 EIFCAPSEFMFAVNGTHFCSFPYRYPLYTITRLQILPRVDIFKIQ 234
+ +F + H +FP R ++ L + ++ +
Sbjct: 82 TVTFESDKFKVKLPDGHELTFPNRLGHSHLSYLSVRGGFNMSSFK 126
Score = 63.4 bits (154), Expect = 2e-12
Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 5/70 (7%)
Query: 465 RFAVNLVISGHDDDDIALHFNPRFDVNYCVRNSCRNKVWGEEEKAAYVSNPFKLGENFVL 524
F +NL G D + LHFNPRF + V NS WG+E++ + F G
Sbjct: 27 GFVINL---GQGTDKLNLHFNPRFSESTIVCNSLDGSNWGQEQREDH--LCFSPGSEVKF 81
Query: 525 EIFCAPSEFM 534
+ +F
Sbjct: 82 TVTFESDKFK 91
Score = 28.0 bits (62), Expect = 3.9
Identities = 9/40 (22%), Positives = 16/40 (40%), Gaps = 9/40 (22%)
Query: 268 KVDVSGKVP----KFFINLQHGKLLWPHPNISFHTSVRFK 303
+ ++G + F INL G ++ H + RF
Sbjct: 14 TLKITGSIADGTDGFVINLGQG-----TDKLNLHFNPRFS 48
>1c1l_A Protein (congerin I); galectin, lectin, beta-galactose-binding,
sugar binding PROT; HET: GAL BGC; 1.50A {Conger
myriaster} SCOP: b.29.1.3 PDB: 1c1f_A* 3ajy_A*
Length = 137
Score = 96.9 bits (241), Expect = 4e-24
Identities = 23/111 (20%), Positives = 44/111 (39%), Gaps = 11/111 (9%)
Query: 130 RFAVNLVISGHDDDDIALHFNPRFDV----NYCVRNSCRNK--VWGEEEKAAYVSNPFKL 183
RF+VN+ G + ++LH + RF+ N V NS W E+++
Sbjct: 30 RFSVNV---GESMNSLSLHLDHRFNYGADQNTIVMNSTLKGDNGWETEQRSTNF--TLSA 84
Query: 184 GENFVLEIFCAPSEFMFAVNGTHFCSFPYRYPLYTITRLQILPRVDIFKIQ 234
G+ F + + ++F + FP RY + L + + ++
Sbjct: 85 GQYFEITLSYDINKFYIDILDGPNLEFPNRYSKEFLPFLSLAGDARLTLVK 135
Score = 60.7 bits (147), Expect = 2e-11
Identities = 18/75 (24%), Positives = 33/75 (44%), Gaps = 11/75 (14%)
Query: 465 RFAVNLVISGHDDDDIALHFNPRFDV----NYCVRNSCRNK--VWGEEEKAAYVSNPFKL 518
RF+VN+ G + ++LH + RF+ N V NS W E+++
Sbjct: 30 RFSVNV---GESMNSLSLHLDHRFNYGADQNTIVMNSTLKGDNGWETEQRSTNF--TLSA 84
Query: 519 GENFVLEIFCAPSEF 533
G+ F + + ++F
Sbjct: 85 GQYFEITLSYDINKF 99
Score = 29.9 bits (67), Expect = 0.94
Identities = 4/28 (14%), Positives = 11/28 (39%)
Query: 421 KSFVMRILLKEDHFSVSIDDEKFINYKY 448
+ F + + + F + I D + +
Sbjct: 86 QYFEITLSYDINKFYIDILDGPNLEFPN 113
>3b9c_A HSPC159; beta sandwich, unknown function; 1.90A {Homo sapiens} PDB:
2jj6_A
Length = 144
Score = 95.4 bits (237), Expect = 2e-23
Identities = 31/107 (28%), Positives = 46/107 (42%), Gaps = 4/107 (3%)
Query: 130 RFAVNLV--ISGHDDDDIALHFNPRFDVNYCVRNSCRNKVWGEEEKAAYVSNPFKLGENF 187
FA++L S D+A+ F +RNSC + GEE+ A PF + F
Sbjct: 38 SFAISLTCGDSEDPPADVAIELKAVFTDRQLLRNSCISGERGEEQSAIP-YFPFIPDQPF 96
Query: 188 VLEIFCAPSEFMFAVNGTHFCSFPYRY-PLYTITRLQILPRVDIFKI 233
+EI C F V+G F +R L I ++I + I K+
Sbjct: 97 RVEILCEYPRFRVFVDGHQLFDFYHRIQTLSAIDTIKINGDLQITKL 143
Score = 64.6 bits (157), Expect = 1e-12
Identities = 22/72 (30%), Positives = 31/72 (43%), Gaps = 3/72 (4%)
Query: 465 RFAVNLV--ISGHDDDDIALHFNPRFDVNYCVRNSCRNKVWGEEEKAAYVSNPFKLGENF 522
FA++L S D+A+ F +RNSC + GEE+ A PF + F
Sbjct: 38 SFAISLTCGDSEDPPADVAIELKAVFTDRQLLRNSCISGERGEEQSAIP-YFPFIPDQPF 96
Query: 523 VLEIFCAPSEFM 534
+EI C F
Sbjct: 97 RVEILCEYPRFR 108
Score = 35.0 bits (80), Expect = 0.020
Identities = 11/40 (27%), Positives = 15/40 (37%), Gaps = 4/40 (10%)
Query: 268 KVDVSGKVP----KFFINLQHGKLLWPHPNISFHTSVRFK 303
KV V G V F I+L G P +++ F
Sbjct: 25 KVLVMGIVDLNPESFAISLTCGDSEDPPADVAIELKAVFT 64
Score = 28.4 bits (63), Expect = 3.4
Identities = 6/28 (21%), Positives = 14/28 (50%)
Query: 421 KSFVMRILLKEDHFSVSIDDEKFINYKY 448
+ F + IL + F V +D + ++ +
Sbjct: 94 QPFRVEILCEYPRFRVFVDGHQLFDFYH 121
>2wkk_A Galectin-2; sugar-binding protein, secreted, cell WALL, sugar
binding, sugar binding protein, beta-galactoside binding
lectin, fruiting BODY; HET: GAL NAG FUC; 1.50A
{Coprinopsis cinerea} PDB: 1ulc_A* 1ul9_A* 1ule_A*
1ulf_A* 1ulg_A* 1uld_A*
Length = 150
Score = 93.8 bits (233), Expect = 8e-23
Identities = 21/117 (17%), Positives = 36/117 (30%), Gaps = 9/117 (7%)
Query: 130 RFAVNLVISGHDDDDIALHFNPRFDVNYCVRNSC-RNKVWGEEEKAAYVSNPFKLGENFV 188
N + +G ++I LH + R N V NS +N WG EE+ Y N
Sbjct: 36 TTVFNFLSAG---ENILLHISIRPGENVIVFNSRLKNGAWGPEERIPYA--EKFRPPNPS 90
Query: 189 LEIFCAPSEFMFAVNGTHFCSFPYRYPLYTITRLQILPRVDIF--KIQTKLLHSYPA 243
+ + F + + R + +F + + P
Sbjct: 91 ITVIDHGDRFQIRFDYGTSIYYNKRIK-ENAAAIAYNAENSLFSSPVTVDVHGLLPP 146
Score = 72.6 bits (178), Expect = 2e-15
Identities = 18/76 (23%), Positives = 29/76 (38%), Gaps = 7/76 (9%)
Query: 465 RFAVNLVISGHDDDDIALHFNPRFDVNYCVRNSC-RNKVWGEEEKAAYVSNPFKLGENFV 523
N + +G ++I LH + R N V NS +N WG EE+ Y N
Sbjct: 36 TTVFNFLSAG---ENILLHISIRPGENVIVFNSRLKNGAWGPEERIPYA--EKFRPPNPS 90
Query: 524 LEIFCAPSEFMPVPIN 539
+ + F + +
Sbjct: 91 ITVIDHGDRFQ-IRFD 105
Score = 30.6 bits (69), Expect = 0.61
Identities = 6/29 (20%), Positives = 11/29 (37%)
Query: 420 PKSFVMRILLKEDHFSVSIDDEKFINYKY 448
P + + ++ D F + D I Y
Sbjct: 86 PPNPSITVIDHGDRFQIRFDYGTSIYYNK 114
>3ap9_A Galectin-8; beta-sandwich, carbohydrate/sugar binding, lacto-N
fucopentaose III, sugar binding protein; HET: GAL FUC
NAG BGC; 1.33A {Homo sapiens} PDB: 3ap4_A 3ap5_A*
3ap6_A* 3ap7_A* 3apb_A 2yv8_A 2yxs_A*
Length = 154
Score = 93.9 bits (233), Expect = 9e-23
Identities = 39/108 (36%), Positives = 51/108 (47%), Gaps = 5/108 (4%)
Query: 130 RFAVNLVI--SGHDDDDIALHFNPRFDVNYC-VRNSCRNKVWGEEEKAAYVSNPFKLGEN 186
RF V+L S D+A HFNPRF C V N+ N+ WG EE PFK ++
Sbjct: 45 RFQVDLQNGSSVKPRADVAFHFNPRFKRAGCIVCNTLINEKWGREEITYD--TPFKREKS 102
Query: 187 FVLEIFCAPSEFMFAVNGTHFCSFPYRYPLYTITRLQILPRVDIFKIQ 234
F + I +F AVNG H + +R I L I +V+I I
Sbjct: 103 FEIVIMVLKDKFQVAVNGKHTLLYGHRIGPEKIDTLGIYGKVNIHSIG 150
Score = 63.5 bits (154), Expect = 3e-12
Identities = 29/78 (37%), Positives = 38/78 (48%), Gaps = 6/78 (7%)
Query: 465 RFAVNLVI--SGHDDDDIALHFNPRFDVNYC-VRNSCRNKVWGEEEKAAYVSNPFKLGEN 521
RF V+L S D+A HFNPRF C V N+ N+ WG EE PFK ++
Sbjct: 45 RFQVDLQNGSSVKPRADVAFHFNPRFKRAGCIVCNTLINEKWGREEITYD--TPFKREKS 102
Query: 522 FVLEIFCAPSEFMPVPIN 539
F + I +F V +N
Sbjct: 103 FEIVIMVLKDKFQ-VAVN 119
Score = 39.2 bits (91), Expect = 0.001
Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 4/42 (9%)
Query: 268 KVDVSGKVPK----FFINLQHGKLLWPHPNISFHTSVRFKYK 305
+ + G VP F ++LQ+G + P +++FH + RFK
Sbjct: 32 LIVIRGHVPSDADRFQVDLQNGSSVKPRADVAFHFNPRFKRA 73
>3zsj_A Galectin-3; sugar binding protein; HET: LAT; 0.86A {Homo sapiens}
PDB: 2nmn_A* 2nn8_A* 2nmo_A* 3t1m_A* 3t1l_A* 1kjl_A*
1kjr_A* 1a3k_A* 2xg3_A* 3zsk_A 3zsl_A 3zsm_A 3ayc_A*
3aya_A* 3ayd_A* 3aye_A*
Length = 138
Score = 93.1 bits (231), Expect = 1e-22
Identities = 33/109 (30%), Positives = 53/109 (48%), Gaps = 10/109 (9%)
Query: 130 RFAVNLVISGHDDDDIALHFNPRFDVNYC---VRNSCRNKVWGEEEKAAYVSNPFKLGEN 186
R A++ +D+A HFNPRF+ N V N+ + WG EE+ + PF+ G+
Sbjct: 32 RIALDF----QRGNDVAFHFNPRFNENNRRVIVCNTKLDNNWGREERQSV--FPFESGKP 85
Query: 187 FVLEIFCAPSEFMFAVNGTHFCSFPYRY-PLYTITRLQILPRVDIFKIQ 234
F +++ P F AVN H + +R L I++L I +D+
Sbjct: 86 FKIQVLVEPDHFKVAVNDAHLLQYNHRVKKLNEISKLGISGDIDLTSAS 134
Score = 59.9 bits (145), Expect = 5e-11
Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 9/73 (12%)
Query: 465 RFAVNLVISGHDDDDIALHFNPRFDVNYC---VRNSCRNKVWGEEEKAAYVSNPFKLGEN 521
R A++ +D+A HFNPRF+ N V N+ + WG EE+ + PF+ G+
Sbjct: 32 RIALDF----QRGNDVAFHFNPRFNENNRRVIVCNTKLDNNWGREERQSV--FPFESGKP 85
Query: 522 FVLEIFCAPSEFM 534
F +++ P F
Sbjct: 86 FKIQVLVEPDHFK 98
Score = 28.7 bits (64), Expect = 2.8
Identities = 8/48 (16%), Positives = 18/48 (37%), Gaps = 10/48 (20%)
Query: 268 KVDVSGKVP----KFFINLQHGKLLWPHPNISFHTSVRFKYKAESNVT 311
+ + G V + ++ Q G +++FH + RF +
Sbjct: 19 LITILGTVKPNANRIALDFQRG------NDVAFHFNPRFNENNRRVIV 60
Score = 26.8 bits (59), Expect = 9.4
Identities = 9/28 (32%), Positives = 19/28 (67%)
Query: 421 KSFVMRILLKEDHFSVSIDDEKFINYKY 448
K F +++L++ DHF V+++D + Y +
Sbjct: 84 KPFKIQVLVEPDHFKVAVNDAHLLQYNH 111
>1qmj_A Beta-galactoside-binding lectin; galectin, sugar binding protein;
2.15A {Gallus gallus} SCOP: b.29.1.3
Length = 132
Score = 92.4 bits (229), Expect = 2e-22
Identities = 34/109 (31%), Positives = 49/109 (44%), Gaps = 10/109 (9%)
Query: 130 RFAVNLVISGHDDDDIALHFNPRFDVNYC----VRNSCRNKVWGEEEKAAYVSNPFKLGE 185
F+VN+ G D + LHFNPRFD + V NS + WGEE++ A PF+ G+
Sbjct: 28 GFSVNV---GKDSSTLMLHFNPRFDCHGDVNTVVCNSKEDGTWGEEDRKA--DFPFQQGD 82
Query: 186 NFVLEIFCAPSEFMFAVNGTHFCSFPYRYPLYTITRLQILPRVDIFKIQ 234
+ I +E V F FP R + I L + + I+
Sbjct: 83 KVEICISFDAAEVKVKVPEVEF-EFPNRLGMEKIQYLAVEGDFKVKAIK 130
Score = 64.6 bits (157), Expect = 8e-13
Identities = 26/74 (35%), Positives = 37/74 (50%), Gaps = 9/74 (12%)
Query: 465 RFAVNLVISGHDDDDIALHFNPRFDVNYC----VRNSCRNKVWGEEEKAAYVSNPFKLGE 520
F+VN+ G D + LHFNPRFD + V NS + WGEE++ A PF+ G+
Sbjct: 28 GFSVNV---GKDSSTLMLHFNPRFDCHGDVNTVVCNSKEDGTWGEEDRKA--DFPFQQGD 82
Query: 521 NFVLEIFCAPSEFM 534
+ I +E
Sbjct: 83 KVEICISFDAAEVK 96
Score = 28.4 bits (63), Expect = 2.9
Identities = 10/47 (21%), Positives = 16/47 (34%), Gaps = 9/47 (19%)
Query: 268 KVDVSGKVP----KFFINLQHGKLLWPHPNISFHTSVRFKYKAESNV 310
V V GK+ F +N+ + H + RF + N
Sbjct: 15 CVKVKGKILSDAKGFSVNVGKDS-----STLMLHFNPRFDCHGDVNT 56
>3dui_A Beta-galactoside-binding lectin; carbohydrate-binding proteins,
galactosides, galectin, acetylation, sugar binding
protein; 2.10A {Gallus gallus}
Length = 135
Score = 91.5 bits (227), Expect = 4e-22
Identities = 33/108 (30%), Positives = 45/108 (41%), Gaps = 10/108 (9%)
Query: 130 RFAVNLVISGHDDDDIALHFNPRFD----VNYCVRNSCRNKVWGEEEKAAYVSNPFKLGE 185
F +NL G D + LHFNPRFD VN V NS + + WG E++ PF+ G
Sbjct: 31 SFVMNL---GKDSTHLGLHFNPRFDAHGDVNLIVCNSKKMEEWGTEQRETV--FPFQKGA 85
Query: 186 NFVLEIFCAPSEFMFAVNGTHFCSFPYRYPLYTITRLQILPRVDIFKI 233
+ PS+ + G F SFP R L + +
Sbjct: 86 PIEITFSINPSDLTVHLPGHQF-SFPNRLGLSVFDYFDTHGDFTLRSV 132
Score = 64.6 bits (157), Expect = 1e-12
Identities = 26/74 (35%), Positives = 35/74 (47%), Gaps = 9/74 (12%)
Query: 465 RFAVNLVISGHDDDDIALHFNPRFD----VNYCVRNSCRNKVWGEEEKAAYVSNPFKLGE 520
F +NL G D + LHFNPRFD VN V NS + + WG E++ PF+ G
Sbjct: 31 SFVMNL---GKDSTHLGLHFNPRFDAHGDVNLIVCNSKKMEEWGTEQRETV--FPFQKGA 85
Query: 521 NFVLEIFCAPSEFM 534
+ PS+
Sbjct: 86 PIEITFSINPSDLT 99
Score = 29.1 bits (65), Expect = 1.6
Identities = 10/57 (17%), Positives = 21/57 (36%), Gaps = 9/57 (15%)
Query: 268 KVDVSGKVP----KFFINLQHGKLLWPHPNISFHTSVRFKYKAESNVTSGDVKQENV 320
++ V G + F +NL ++ H + RF + N+ + K+
Sbjct: 18 RLTVKGIIAPNAKSFVMNLGKDS-----THLGLHFNPRFDAHGDVNLIVCNSKKMEE 69
>1is3_A Congerin II; complex with lactose and MES, sugar binding protein;
HET: LAT MES; 1.45A {Conger myriaster} SCOP: b.29.1.3
PDB: 1is4_A* 1is5_A 1is6_A* 1wld_A* 1wlw_A* 1wlc_A*
3ak0_A* 3ajz_A*
Length = 135
Score = 88.5 bits (219), Expect = 4e-21
Identities = 27/110 (24%), Positives = 43/110 (39%), Gaps = 10/110 (9%)
Query: 130 RFAVNLVISGHDDDDIALHFNPRFDV----NYCVRNS-CRNKVWGEEEKAAYVSNPFKLG 184
RF++N+ G D IA+H + RF N V NS N W +EE+ PF G
Sbjct: 29 RFSINV---GESTDSIAMHMDHRFSYGADQNVLVLNSLVHNVGWQQEER--SKKFPFTKG 83
Query: 185 ENFVLEIFCAPSEFMFAVNGTHFCSFPYRYPLYTITRLQILPRVDIFKIQ 234
++F I F ++ FP R + + + ++
Sbjct: 84 DHFQTTITFDTHTFYIQLSNGETVEFPNRNKDAAFNLIYLAGDARLTFVR 133
Score = 55.8 bits (134), Expect = 1e-09
Identities = 24/75 (32%), Positives = 33/75 (44%), Gaps = 10/75 (13%)
Query: 465 RFAVNLVISGHDDDDIALHFNPRFDV----NYCVRNS-CRNKVWGEEEKAAYVSNPFKLG 519
RF++N+ G D IA+H + RF N V NS N W +EE+ PF G
Sbjct: 29 RFSINV---GESTDSIAMHMDHRFSYGADQNVLVLNSLVHNVGWQQEER--SKKFPFTKG 83
Query: 520 ENFVLEIFCAPSEFM 534
++F I F
Sbjct: 84 DHFQTTITFDTHTFY 98
Score = 28.4 bits (63), Expect = 2.8
Identities = 14/48 (29%), Positives = 19/48 (39%), Gaps = 9/48 (18%)
Query: 268 KVDVSGKVPK----FFINLQHGKLLWPHPNISFHTSVRFKYKAESNVT 311
+ V G V F IN+ +I+ H RF Y A+ NV
Sbjct: 16 YLTVGGVVNSNATRFSINVGEST-----DSIAMHMDHRFSYGADQNVL 58
>2r0h_A CGL3 lectin; galectin-related, sugar binding protein, chitotriose,
chitooligosaccharides; HET: CTO; 1.90A {Coprinus
cinereus} PDB: 2r0f_A*
Length = 164
Score = 85.9 bits (212), Expect = 7e-20
Identities = 24/113 (21%), Positives = 37/113 (32%), Gaps = 11/113 (9%)
Query: 130 RFAVNLVISGHDDDDIALHFNPRFDVNYCVRNSCR-NKVWGEEEKAAYVSNPFKLGENFV 188
VNL+ + D+ LH R N V NS + G EE+ F +
Sbjct: 45 NTNVNLINAK---GDVLLHIGIRRRENAFVFNSIPYGESRGPEERIPL-EGTFGDRRDPS 100
Query: 189 LEIFCAPSEFMFAVNGTHFCSFPYRYP------LYTITRLQILPRVDIFKIQT 235
+ IF P + ++ + R Y I Q P D+ +
Sbjct: 101 ITIFDHPDRYQIMIDYKTVYYYKKRLEGRCEKVSYKINEGQTPPFSDVLGVTV 153
Score = 67.4 bits (164), Expect = 2e-13
Identities = 19/76 (25%), Positives = 29/76 (38%), Gaps = 6/76 (7%)
Query: 465 RFAVNLVISGHDDDDIALHFNPRFDVNYCVRNSCR-NKVWGEEEKAAYVSNPFKLGENFV 523
VNL+ + D+ LH R N V NS + G EE+ F +
Sbjct: 45 NTNVNLINAK---GDVLLHIGIRRRENAFVFNSIPYGESRGPEERIPL-EGTFGDRRDPS 100
Query: 524 LEIFCAPSEFMPVPIN 539
+ IF P + + I+
Sbjct: 101 ITIFDHPDRYQ-IMID 115
Score = 29.3 bits (65), Expect = 1.9
Identities = 7/35 (20%), Positives = 13/35 (37%)
Query: 413 VESLLKVPKSFVMRILLKEDHFSVSIDDEKFINYK 447
+E + + I D + + ID + YK
Sbjct: 89 LEGTFGDRRDPSITIFDHPDRYQIMIDYKTVYYYK 123
>1ww7_A Galectin; carbohydrate recognition domain,X-RAY crystallographic
analysis, sulfate ION, sugar binding protein; 1.90A
{Agrocybe cylindracea} PDB: 1ww4_A* 1ww6_A* 1ww5_A
2zgl_A 2zgm_A* 2zgn_A* 3afk_A* 3m3c_A* 3m3q_A* 2zgk_A
2zgs_A 2zgq_A 2zgr_A 3m3e_A* 2zgo_A* 3m3o_A* 2zgp_A
2zgu_A 2zgt_A
Length = 160
Score = 74.4 bits (182), Expect = 7e-16
Identities = 18/100 (18%), Positives = 36/100 (36%), Gaps = 5/100 (5%)
Query: 118 VINTNDLSALVFRFAVNLVISGHDDDDIALHFNPRFDVNYCVRNSCR-NKVWGEEEKAAY 176
+N + + A+NL+ LH R N V NS + N W E++ +
Sbjct: 34 ALNLSAGAGSPNNTALNLLSENGA---YLLHIAFRLQENVIVFNSRQPNAPWLVEQRVSN 90
Query: 177 V-SNPFKLGENFVLEIFCAPSEFMFAVNGTHFCSFPYRYP 215
V + G ++ +F ++ +N + +
Sbjct: 91 VANQFIGSGGKAMVTVFDHGDKYQVVINEKTVIQYTKQIS 130
Score = 61.3 bits (148), Expect = 2e-11
Identities = 17/86 (19%), Positives = 33/86 (38%), Gaps = 5/86 (5%)
Query: 450 RGVSINTNDLSALVFRFAVNLVISGHDDDDIALHFNPRFDVNYCVRNSCR-NKVWGEEEK 508
++N + + A+NL+ LH R N V NS + N W E++
Sbjct: 31 FSSALNLSAGAGSPNNTALNLLSENGA---YLLHIAFRLQENVIVFNSRQPNAPWLVEQR 87
Query: 509 AAYV-SNPFKLGENFVLEIFCAPSEF 533
+ V + G ++ +F ++
Sbjct: 88 VSNVANQFIGSGGKAMVTVFDHGDKY 113
Score = 29.7 bits (66), Expect = 1.3
Identities = 6/42 (14%), Positives = 15/42 (35%)
Query: 407 ELKFNAVESLLKVPKSFVMRILLKEDHFSVSIDDEKFINYKY 448
+ N + ++ + D + V I+++ I Y
Sbjct: 86 QRVSNVANQFIGSGGKAMVTVFDHGDKYQVVINEKTVIQYTK 127
>2cg5_B Fatty acid synthase; transferase-hydrolase complex,
transferase/hydrolase (comple fatty acid biosynthesis,
phosphopantetheine transferase; HET: COA; 2.7A {Homo
sapiens} PDB: 2png_A
Length = 91
Score = 65.5 bits (159), Expect = 1e-13
Identities = 18/66 (27%), Positives = 44/66 (66%)
Query: 351 VTVQKVIGDILGIQNITSISDSATLSDLGLDSLMAADVKNVLQSKFNISLTNEQIKELKF 410
+ + + ILGI+++ +++ ++L+DLGLD+LM+ +V+ L+ + N+ L+ ++++L
Sbjct: 9 RDLVEAVAHILGIRDLAAVNLDSSLADLGLDALMSVEVRQTLERELNLVLSVREVRQLTL 68
Query: 411 NAVESL 416
++ L
Sbjct: 69 RKLQEL 74
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 57.2 bits (137), Expect = 9e-09
Identities = 56/385 (14%), Positives = 112/385 (29%), Gaps = 126/385 (32%)
Query: 1 MDGIEDPALVE------RI----RNTE--DFMNVEKDEPNAGEPQSSQFYCCEHTRSTLI 48
+ +++ +I R + DF++ + + S E +S L+
Sbjct: 250 LLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDE-VKSLLL 308
Query: 49 R--NSKASDLENQENLAPPGGCDCNHKMDGIEDPALV----ERIRN----TEDFMNVEKD 98
+ + + DL P N P + E IR+ +++ +V D
Sbjct: 309 KYLDCRPQDL-------PREVLTTN--------PRRLSIIAESIRDGLATWDNWKHVNCD 353
Query: 99 ELCKVWSEQKIRKEWTVEDVINTNDLSALVFRFAVNLVISGHDDDDIALHFNPRFDVN-- 156
+L + E + +V+ + + R +V F P +
Sbjct: 354 KLTTI-IESSL-------NVLEPAEYRKMFDRLSV---------------FPP--SAHIP 388
Query: 157 ---YCVRNSCRNKVWGEEEKAAYVSNPFKLGENFVLEIFCAPSEFMFAVNGTHFCS---- 209
+ +W + S+ M VN H S
Sbjct: 389 TILLSL-------IWFDVI----------------------KSDVMVVVNKLHKYSLVEK 419
Query: 210 --FPYRYPLYTITRLQILPRVDIFKIQTKLLHSYPATT---QDDLVAQLKDQPLYHH--- 261
+ +I + + + + ++ Y DDL+ DQ Y H
Sbjct: 420 QPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGH 479
Query: 262 HVLGYEKVDVSGKVPKFFIN-------LQHGKLLWPHPNISFHTSVRFK-YKAESNVTSG 313
H+ E + F++ ++H W +T + K YK +
Sbjct: 480 HLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYK--PYICDN 537
Query: 314 DVKQENVTVQKVIGDILAPAFCKRY 338
D K E +++ IL F +
Sbjct: 538 DPKYE-----RLVNAIL--DFLPKI 555
Score = 47.5 bits (112), Expect = 1e-05
Identities = 70/464 (15%), Positives = 152/464 (32%), Gaps = 125/464 (26%)
Query: 106 EQKIRKEWTVEDVINTNDLSALVFRFAV--NLVISGHDDDDIALHFNPRFDVNYCVRNSC 163
E + +DV D+ + ++++S F + + +
Sbjct: 26 EDAFVDNFDCKDV---QDMPKSILSKEEIDHIIMSKDAVSGTLRLF-------WTLLSK- 74
Query: 164 RNKVWGEEEKAAYVSNPFKLGENFVLEIFC----APS----EFMFAVNGTHFCSFPYRYP 215
EE +V ++ F++ PS ++ + + + +
Sbjct: 75 -----QEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLY--NDNQVFA 127
Query: 216 LYTITRLQILPRVDIFKIQTKLLHSYPATTQDDLVAQLKDQP-LYHHHVLGYEK----VD 270
Y ++RLQ K++ LL +L+ + VLG K +D
Sbjct: 128 KYNVSRLQ-----PYLKLRQALL-------------ELRPAKNVLIDGVLGSGKTWVALD 169
Query: 271 V----------SGKVPKFFINL----QHGKLLWPHPNISFHTSVRFKYKAESNVTSGDVK 316
V K+ F++NL +L + + + +++ S ++K
Sbjct: 170 VCLSYKVQCKMDFKI--FWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDH---SSNIK 224
Query: 317 QENVTVQKVIGDILAPAFCKRYKN---VTSGDVKQENV----TVQ-KVIGDILGIQNITS 368
++Q + +L K Y+N V +V+ + K++ +T+
Sbjct: 225 LRIHSIQAELRRLLKS---KPYENCLLVLL-NVQNAKAWNAFNLSCKIL--------LTT 272
Query: 369 ISDSATLSDLGLDSLMAADVKNVLQSKFNISLTNEQIKELKFNAVE-SLLKVPKSFVMRI 427
T D L AA ++ +++LT +++K L ++ +P+ +
Sbjct: 273 RFKQVT------DFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTN 326
Query: 428 LLKEDHFSVSIDDEK--FINYKY---DRGVSINTNDLSAL-------------VFRFAVN 469
+ + SI D + N+K+ D+ +I + L+ L VF + +
Sbjct: 327 PRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAH 386
Query: 470 -----LVISGHDDDDIALHFNPRFDVNYCVRNSCRNKVWGEEEK 508
L + D + VN + S K +E
Sbjct: 387 IPTILLSLIWFDVIKS----DVMVVVNKLHKYSLVEK-QPKEST 425
>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme,
megasynthase, fatty acid synthesis; 3.2A {Sus scrofa}
PDB: 2vz9_A*
Length = 2512
Score = 49.9 bits (119), Expect = 2e-06
Identities = 22/65 (33%), Positives = 43/65 (66%)
Query: 353 VQKVIGDILGIQNITSISDSATLSDLGLDSLMAADVKNVLQSKFNISLTNEQIKELKFNA 412
+ K + ILGI+++ SI+ +TL DLGLDSLM +V+ +L+ + ++ L+ ++++L
Sbjct: 2128 LVKAVAHILGIRDVASINPDSTLVDLGLDSLMGVEVRQILEREHDLVLSMREVRQLSLRK 2187
Query: 413 VESLL 417
++ L
Sbjct: 2188 LQELS 2192
>2jq4_A AGR_C_4658P, hypothetical protein ATU2571; ATC2521, unknown
function, ATC, S genomics, PSI-2, protein structure
initiative; NMR {Agrobacterium tumefaciens} SCOP:
a.28.1.1
Length = 105
Score = 44.2 bits (104), Expect = 5e-06
Identities = 11/66 (16%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Query: 352 TVQKVIGDILGIQ-NITSISDSATLSDLGLDSLMAADVKNVLQSKFNISLTNEQIKELKF 410
T+++++ + + +I+D A L GL S + + ++ F+I + + F
Sbjct: 26 TIREILAKFGQLPTPVDTIADEADLYAAGLSSFASVQLMLGIEEAFDIEFPDNLLNRKSF 85
Query: 411 NAVESL 416
+++++
Sbjct: 86 ASIKAI 91
>2kr5_A PKS, aflatoxin biosynthesis polyketide synthase; acyl carrrier
protein, holo, phosphopantetheine, transport protein;
HET: PNS; NMR {Aspergillus parasiticus}
Length = 89
Score = 42.2 bits (99), Expect = 2e-05
Identities = 11/50 (22%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 352 TVQKVIGDILGIQNITSISDSATLSDLGLDSLMAADVKNVLQSKFNISLT 401
V +V+ + GI + ++D + +D+G+DSL + + + + + L
Sbjct: 15 AVMRVVSEESGI-ALEELTDDSNFADMGIDSLSSMVIGSRFREDLGLDLG 63
>2l22_A Mupirocin didomain acyl carrier protein; biosynthetic protein; NMR
{Pseudomonas fluorescens}
Length = 212
Score = 44.1 bits (104), Expect = 3e-05
Identities = 11/49 (22%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 353 VQKVIGDILGIQNITSISDSATLSDLGLDSLMAADVKNVLQSKFNISLT 401
+++ +G++L + + + A DLG+DS+ + F+I L
Sbjct: 135 LKQSLGELLFL-DPGQLRSGAQFLDLGMDSVTGTQWMRGVSRHFSIQLA 182
Score = 43.4 bits (102), Expect = 6e-05
Identities = 10/49 (20%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 353 VQKVIGDILGIQNITSISDSATLSDLGLDSLMAADVKNVLQSKFNISLT 401
+++ + +L I D + +LGLDS++AA + + + +
Sbjct: 31 LRQSLAAMLYC-EPGQIRDGSRFLELGLDSVIAAQWIREINKHYQLKIP 78
>2lte_A Specialized acyl carrier protein; APO protein, transferase; NMR
{Pseudomonas aeruginosa}
Length = 103
Score = 40.2 bits (93), Expect = 2e-04
Identities = 12/58 (20%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 352 TVQKVIGDILGIQNITSISDSATLSDLGLDSLMAADVKNVLQSKFNISLTNEQIKELK 409
+ V+ G+ IS + + DL DSL+ +++ L+ +F ++ ++++ L+
Sbjct: 30 HLLTVLSVASGVP-KEEISRDSRMEDLAFDSLVVSELSLKLRKEFGVTGVDDELDLLE 86
>1nq4_A Oxytetracycline polyketide synthase acyl carrier protein; solution
structure, dynamics, ACP, biosynthetic protein; NMR
{Streptomyces rimosus} SCOP: a.28.1.1
Length = 95
Score = 38.0 bits (88), Expect = 8e-04
Identities = 9/57 (15%), Positives = 24/57 (42%), Gaps = 1/57 (1%)
Query: 353 VQKVIGDILGIQNITSISDSATLSDLGLDSLMAADVKNVLQSKFNISLTNEQIKELK 409
+++ G+ I + D LG DSL + ++ + + L ++ +++
Sbjct: 13 LRECAGEEESIDLGGDVEDV-AFDALGYDSLALLNTVGRIERDYGVQLGDDAVEKAT 68
>2afd_A Protein ASL1650; twisted antiparallel helical bundle, acyl carrier
protein FA structural genomics, PSI, protein structure
initiative; NMR {Nostoc SP} PDB: 2afe_A
Length = 88
Score = 36.2 bits (84), Expect = 0.002
Identities = 7/48 (14%), Positives = 15/48 (31%), Gaps = 1/48 (2%)
Query: 353 VQKVIGDILGIQNITSISDSATLSDLGLDSLMAADVKNVLQSKFNISL 400
+ L + + I + + L+S A + L+ L
Sbjct: 19 LIDQFAQQLDV-DPDDIDMEESFDNYDLNSSKALILLGRLEKWLGKEL 65
>2kw2_A Specialized acyl carrier protein; structural genomics, northeast
structural genomics consortiu PSI-2, protein structure
initiative; NMR {Rhodopseudomonas palustris} PDB:
2ll8_A* 2lpk_A 3lmo_A
Length = 101
Score = 36.3 bits (84), Expect = 0.003
Identities = 21/77 (27%), Positives = 31/77 (40%), Gaps = 2/77 (2%)
Query: 353 VQKVIGDILGIQNITSISDSATLSDLGLDSLMAADVKNVLQSKFNISLTNEQIKELKF-- 410
V +I + I T +S + DLG+DSL D+ + F I L E+ +
Sbjct: 8 VATIIAETCDIPRETITPESHAIDDLGIDSLDFLDIAFAIDKAFGIKLPLEKWTQEVNDG 67
Query: 411 NAVESLLKVPKSFVMRI 427
A V K+ RI
Sbjct: 68 KATTEQYFVLKNLAARI 84
>1af8_A Actinorhodin polyketide synthase acyl carrier Pro; acyl carrier
protein, solution STR antibiotic biosynthesis; NMR
{Streptomyces coelicolor} SCOP: a.28.1.1 PDB: 2af8_A
2k0x_A* 2k0y_A 2kg6_A* 2kg8_A* 2kg9_A* 2kga_A* 2kgc_A*
2kgd_A* 2kge_A*
Length = 86
Score = 35.2 bits (81), Expect = 0.005
Identities = 11/57 (19%), Positives = 24/57 (42%), Gaps = 1/57 (1%)
Query: 353 VQKVIGDILGIQNITSISDSATLSDLGLDSLMAADVKNVLQSKFNISLTNEQIKELK 409
+ + G+ G D D+G DSL + L+S++ +S+ ++ +
Sbjct: 14 LVECAGETDGTDLSGDFLDL-RFEDIGYDSLALMETAARLESRYGVSIPDDVAGRVD 69
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 38.5 bits (89), Expect = 0.006
Identities = 48/287 (16%), Positives = 84/287 (29%), Gaps = 76/287 (26%)
Query: 166 KVWGEEEKA-AYVSNPFKLGENFVLEIFC-APSEFMFAVNGTHFCSFPYRYP--LYTITR 221
VW +A + + G + +L+I P G Y ++
Sbjct: 1644 DVW---NRADNHFKD--TYGFS-ILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIV 1697
Query: 222 LQILPRVDIFKIQTKLLHSYPATTQDDLVAQLKD----QP-LYHHHVLGYEKVDVSGKVP 276
L IFK + SY ++ L L QP L +E + G +P
Sbjct: 1698 DGKLKTEKIFKEINEHSTSYTFRSEKGL---LSATQFTQPALTLMEKAAFEDLKSKGLIP 1754
Query: 277 --KFFINLQHGKLLWPHP------------NISFHTSV-----RFKYKAESNVTSGDVKQ 317
F G H +S + V R + V ++ +
Sbjct: 1755 ADATFA----G-----HSLGEYAALASLADVMSIESLVEVVFYRGMTMQVA-VPRDELGR 1804
Query: 318 ENV--------TVQKVIGDILAPAFCKRYKNVTSGDVKQE----NV-TVQKVI-GDILGI 363
N V +R T V E NV Q V GD+ +
Sbjct: 1805 SNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLV--EIVNYNVENQQYVAAGDLRAL 1862
Query: 364 QNITSISDSATLSDLGLDSLMAADVKNVLQSKFNISLTNEQIKELKF 410
+T++ L+ + ++ + + SL+ E+++ F
Sbjct: 1863 DTVTNV----------LNFI---KLQKIDIIELQKSLSLEEVEGHLF 1896
Score = 36.6 bits (84), Expect = 0.025
Identities = 54/356 (15%), Positives = 96/356 (26%), Gaps = 136/356 (38%)
Query: 216 LYTITRLQILPRV-DIFKIQTKLLHSYPATTQDDLVAQLKDQPLYHHHVLGYEKVDVSGK 274
LY V D+ K + L L+ D L ++
Sbjct: 176 LYQTYH----VLVGDLIKFSAETLSE--------LIRTTLDAEKVFTQGL-----NI--- 215
Query: 275 VPKFFINLQHGKLLW-----PHPNISFHTSVRF-----------KYKA---ESNVTSGDV 315
L W P+ + S+ Y T G++
Sbjct: 216 ------------LEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGEL 263
Query: 316 KQENVTVQKVIGDILAPAFCKRYKNVTSGDVKQENVTVQKVIGDIL---GIQ-----NIT 367
+ ++ + + V+V+K I +L G++ T
Sbjct: 264 RSYLKGATGHSQGLVTAVAIA-----ETDSWESFFVSVRKAI-TVLFFIGVRCYEAYPNT 317
Query: 368 SISDSATLSDL----GLDSLMAADVKNVLQSKFNISLTNEQIKEL--KFNAVESLLKVPK 421
S+ S L G+ S M + + N LT EQ+++ K N+ +P
Sbjct: 318 SLPPSILEDSLENNEGVPSPMLS-ISN---------LTQEQVQDYVNKTNS-----HLPA 362
Query: 422 SFVMRILLKEDHFSVSIDDEKFINYKYDRGVSINTNDLSALVFRFAVNLVISGHDDDDIA 481
+S+ +N NLV+SG
Sbjct: 363 ---------GKQVEISL---------------VNGAK----------NLVVSGPPQSLYG 388
Query: 482 LHFNPRFDVNYCVRNSC-RNKVWGEEEKAAYVSNPFKLGENFVLEIFCAP--SEFM 534
L+ R + ++++ E K SN F L + +P S +
Sbjct: 389 LNLTLR---KAKAPSGLDQSRIPFSERKLK-FSNRF-------LPVA-SPFHSHLL 432
Score = 35.8 bits (82), Expect = 0.038
Identities = 46/258 (17%), Positives = 77/258 (29%), Gaps = 89/258 (34%)
Query: 37 FY----CCEHTRSTLIRNSKASD-LENQENLAPPGGCDCNHKM---DGIEDPALVERIRN 88
F+ C E +T + S D LEN E + P M + + + +
Sbjct: 304 FFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSP--------MLSISNLTQEQVQDYVNK 355
Query: 89 TEDFMNVEKDELCKVWSEQKIRKEWTVEDVINTNDLSALVFRFAVNLVISGHDDDDIALH 148
T N +++ + ++N NLV+SG L+
Sbjct: 356 T----NSHLPA------GKQVE----IS-LVNGAK----------NLVVSGPPQSLYGLN 390
Query: 149 FNPRFDVNYCVRNSC-RNKVWGEEEKAAYVSNPFKLGENFVLEIFCAP--SEFM------ 199
R + ++++ E K SN F L + +P S +
Sbjct: 391 LTLR---KAKAPSGLDQSRIPFSERKLK-FSNRF-------LPVA-SPFHSHLLVPASDL 438
Query: 200 ----FAVNGTHFCSFPYRYPLY-TIT--RLQ-----ILPR-VDIFKIQTKLLHSYPATTQ 246
N F + + P+Y T L+ I R VD I + + TTQ
Sbjct: 439 INKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDC--IIRLPVK-WETTTQ 495
Query: 247 DDLVAQLKDQPLYHHHVL 264
H+L
Sbjct: 496 FKA-----------THIL 502
Score = 28.9 bits (64), Expect = 6.7
Identities = 27/169 (15%), Positives = 49/169 (28%), Gaps = 68/169 (40%)
Query: 7 PALV-------ERIRNTEDFMNVEKDEPNAG----EPQSSQFY---CCE----------- 41
PAL E ++ + D AG E Y
Sbjct: 1734 PALTLMEKAAFEDLK--SKG-LIPADATFAGHSLGE------YAALASLADVMSIESLVE 1784
Query: 42 --HTRSTLIRNSKASDLENQENLA----PPGGCDCNHKMDGIEDPALVERI-RNTEDFM- 93
R ++ + D + N PG + + ++ +VER+ + T +
Sbjct: 1785 VVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQ--YVVERVGKRTGWLVE 1842
Query: 94 ----NVEK------------DELCKVWSEQKIRK--------EWTVEDV 118
NVE D + V + K++K ++E+V
Sbjct: 1843 IVNYNVENQQYVAAGDLRALDTVTNVLNFIKLQKIDIIELQKSLSLEEV 1891
>2liu_A CURA; holo state, transferase; NMR {Lyngbya majuscula} PDB: 2liw_A*
Length = 99
Score = 34.6 bits (80), Expect = 0.013
Identities = 10/49 (20%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Query: 353 VQKVIGDILGIQNITSISDSATLSDLGLDSLMAADVKNVLQSKFNISLT 401
+++ + + L + I++ DLGLDS++ + + +N++L
Sbjct: 26 LKQQLAEALYT-EESEIAEDQKFVDLGLDSIVGVEWTTTINQTYNLNLK 73
>1or5_A Acyl carrier protein; ACP, biosynthesis, frenolicin, holo,
polyketide synthase, PKS, biosynthetic protein; NMR
{Streptomyces roseofulvus} SCOP: a.28.1.1
Length = 83
Score = 32.9 bits (75), Expect = 0.031
Identities = 14/37 (37%), Positives = 20/37 (54%)
Query: 373 ATLSDLGLDSLMAADVKNVLQSKFNISLTNEQIKELK 409
DLG DSL + VLQ ++ I+LT+E + L
Sbjct: 31 TPFVDLGYDSLALLETAAVLQQRYGIALTDETVGRLG 67
>2kci_A Putative acyl carrier protein; alpha, ACP, PCP, structural
genomics, unknown function, PSI- 2, protein structure
initiative; NMR {Geobacter metallireducens gs-15} PDB:
2kjs_A* 2lml_A* 2kwm_A*
Length = 87
Score = 33.3 bits (76), Expect = 0.032
Identities = 8/57 (14%), Positives = 23/57 (40%)
Query: 353 VQKVIGDILGIQNITSISDSATLSDLGLDSLMAADVKNVLQSKFNISLTNEQIKELK 409
+ + + +I +++ DSL ++ L+ + I ++++LK
Sbjct: 7 LTPIFRQVFDDDSIVLTRETSANDIDAWDSLSHMNLIVSLEVHYKIKFALGELQKLK 63
>1vku_A Acyl carrier protein; TM0175, structural genomics, JCSG, Pro
structure initiative, PSI; 2.00A {Thermotoga maritima}
SCOP: a.28.1.1
Length = 100
Score = 33.2 bits (76), Expect = 0.046
Identities = 10/57 (17%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 353 VQKVIGDILGIQNITSISDSATLSDLGLDSLMAADVKNVLQSKFNISLTNEQIKELK 409
++ + +G ++ ++ + T +LG DS+ D+ + +F + + +E+I +++
Sbjct: 22 FVEIASEKMGK-DLETVDEENTFKELGFDSIDVIDLVMFFEDEFALRIEDEEISKIR 77
>1fh1_A NODF, nodulation protein F; ROOT nodulation factor, protein
backbone fold, lipid binding protein; NMR {Rhizobium
leguminosarum} SCOP: i.11.1.1
Length = 92
Score = 32.0 bits (72), Expect = 0.095
Identities = 13/48 (27%), Positives = 23/48 (47%), Gaps = 8/48 (16%)
Query: 369 ISDSATLSDLGLDSLMAADVKNVLQSKFNISLTNEQIKELKFNAVESL 416
I+ L+ LG+DSL ADV L+ + I +++ N ++
Sbjct: 32 ITTDTELTSLGIDSLGLADVLWDLEQLYGI--------KIEMNTADAW 71
>2lki_A Putative uncharacterized protein; helical bundle, acyl carrier,
phosphopantetheine, fatty acid biosynthesis, lipid
synthesis, PSI-biology; HET: PNS; NMR {Nitrosomonas
europaea}
Length = 105
Score = 31.9 bits (72), Expect = 0.11
Identities = 17/70 (24%), Positives = 36/70 (51%), Gaps = 3/70 (4%)
Query: 352 TVQKVIGDILGIQ-NITSISDSATL--SDLGLDSLMAADVKNVLQSKFNISLTNEQIKEL 408
V+ ++GD+L + +++ S+ L + LDS+ +V L+ F+ S+ +++I
Sbjct: 28 AVRNILGDVLNLGERKHTLTASSVLLGNIPELDSMAVVNVITALEEYFDFSVDDDEISAQ 87
Query: 409 KFNAVESLLK 418
F + SL
Sbjct: 88 TFETLGSLAL 97
>2ju1_A Erythronolide synthase; carrier protein domain, modular polyketide
synthase, alpha- helical bundle, acyltransferase; NMR
{Saccharopolyspora erythraea} PDB: 2ju2_A
Length = 95
Score = 31.8 bits (73), Expect = 0.13
Identities = 11/40 (27%), Positives = 21/40 (52%)
Query: 353 VQKVIGDILGIQNITSISDSATLSDLGLDSLMAADVKNVL 392
V+ +LG + ++ + +LG DSL A ++N+L
Sbjct: 25 VRTSTATVLGHDDPKAVRATTPFKELGFDSLAAVRLRNLL 64
>1f80_D Acyl carrier protein; transferase; HET: PN2; 2.30A {Bacillus
subtilis} SCOP: a.28.1.1 PDB: 2x2b_A* 1hy8_A
Length = 81
Score = 30.9 bits (70), Expect = 0.16
Identities = 14/57 (24%), Positives = 31/57 (54%)
Query: 353 VQKVIGDILGIQNITSISDSATLSDLGLDSLMAADVKNVLQSKFNISLTNEQIKELK 409
V K+I D LG+ +++ DLG D L ++ L+ +F++ +++E +++
Sbjct: 12 VTKIIVDRLGVDEADVKLEASFKEDLGADXLDVVELVMELEDEFDMEISDEDAEKIA 68
>3ce7_A Specific mitochodrial acyl carrier protein; malaria, mitochondrial,
ACP, fatty acid biosynthesis, lipid synthesis,
phosphopantetheine; 1.64A {Toxoplasma}
Length = 107
Score = 31.2 bits (70), Expect = 0.22
Identities = 8/57 (14%), Positives = 22/57 (38%)
Query: 353 VQKVIGDILGIQNITSISDSATLSDLGLDSLMAADVKNVLQSKFNISLTNEQIKELK 409
QK + + + + + T D D L + ++ F++++ +E +
Sbjct: 28 CQKFLQKGEKVTPSSKLEELRTREDRLWDCLDTVEFVLDVEEIFDVTVPDEVADNFQ 84
>2cnr_A FAS, ACP, acyl carrier protein; polykdetide, phosphopantetheine,
lipid transport; NMR {Streptomyces coelicolor} PDB:
2koo_A* 2kop_A* 2koq_A* 2kor_A* 2kos_A*
Length = 82
Score = 30.4 bits (69), Expect = 0.31
Identities = 14/57 (24%), Positives = 30/57 (52%)
Query: 353 VQKVIGDILGIQNITSISDSATLSDLGLDSLMAADVKNVLQSKFNISLTNEQIKELK 409
+ +++ +I GI D + DL +DSL +V + +F++ + ++ +K LK
Sbjct: 12 LAEIVNEIAGIPVEDVKLDKSFTDDLDVDSLSMVEVVVAAEERFDVKIPDDDVKNLK 68
>2amw_A Hypothetical protein NE2163; all helical protein, structural
genomics, PSI, protein structure initiative; NMR
{Nitrosomonas europaea}
Length = 83
Score = 29.9 bits (67), Expect = 0.38
Identities = 15/69 (21%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
Query: 352 TVQKVIGDILGIQNITSISDSATL---SDLGLDSLMAADVKNVLQSKFNISLTNEQIKEL 408
V+ ++GD+L + ++++ + LDS+ +V L+ F+ S+ +++I
Sbjct: 6 AVRNILGDVLNLGERKHTLTASSVLLGNIPELDSMAVVNVITALEEYFDFSVDDDEISAQ 65
Query: 409 KFNAVESLL 417
F + SL
Sbjct: 66 TFETLGSLA 74
>2lol_A ACP, acyl carrier protein; lipid transport; NMR {Rickettsia
prowazekii str}
Length = 81
Score = 29.2 bits (66), Expect = 0.66
Identities = 11/57 (19%), Positives = 29/57 (50%)
Query: 353 VQKVIGDILGIQNITSISDSATLSDLGLDSLMAADVKNVLQSKFNISLTNEQIKELK 409
V +++ + L +DS + DL DSL ++ ++ ++ I + +++ ++K
Sbjct: 11 VIEMVAEKLNKDKAIITTDSRFIEDLKADSLDTVELMMAIEVEYGIDIPDDEATKIK 67
>1klp_A ACP, ACPM, meromycolate extension acyl carrier protein; four-helix
bundle, ligand transport; NMR {Mycobacterium
tuberculosis} SCOP: a.28.1.1
Length = 115
Score = 29.8 bits (67), Expect = 0.72
Identities = 11/57 (19%), Positives = 30/57 (52%)
Query: 353 VQKVIGDILGIQNITSISDSATLSDLGLDSLMAADVKNVLQSKFNISLTNEQIKELK 409
+ ++I ++ GI+ + + + DL +DSL ++ + K+ + + +E + L+
Sbjct: 12 IAEIIEEVTGIEPSEITPEKSFVDDLDIDSLSMVEIAVQTEDKYGVKIPDEDLAGLR 68
>2qnw_A Acyl carrier protein; malaria, SGC, structural genomics CONS fatty
acid biosynthesis, lipid synthesis, phosphopantethein
transit peptide; 1.90A {Toxoplasma gondii}
Length = 82
Score = 29.2 bits (66), Expect = 0.73
Identities = 15/57 (26%), Positives = 30/57 (52%)
Query: 353 VQKVIGDILGIQNITSISDSATLSDLGLDSLMAADVKNVLQSKFNISLTNEQIKELK 409
V+ V+ D LG+ +S + DL DSL + ++ + KF +S+ +E+ ++
Sbjct: 12 VKDVVADQLGVDRARINPESNFIKDLDADSLDSVELVMAFEEKFGVSIPDEEASKIA 68
>2ava_A ACP I, acyl carrier protein I, chloroplast; four-helix-bundle,
biosynthetic protein; NMR {Spinacia oleracea} PDB:
2fva_A* 2fve_A 2fvf_A* 2xz0_D* 2xz1_C*
Length = 82
Score = 29.2 bits (66), Expect = 0.76
Identities = 11/57 (19%), Positives = 29/57 (50%)
Query: 353 VQKVIGDILGIQNITSISDSATLSDLGLDSLMAADVKNVLQSKFNISLTNEQIKELK 409
V ++ + L + ++ + S LG DSL ++ L+ +F I++ ++ +++
Sbjct: 9 VSDIVKEKLALGADVVVTADSEFSKLGADSLDTVEIVMNLEEEFGINVDEDKAQDIS 65
>1x3o_A Acyl carrier protein; structural genomics, riken structural
genomics/proteomics in RSGI, NPPSFA; 1.50A {Thermus
thermophilus}
Length = 80
Score = 28.4 bits (64), Expect = 1.4
Identities = 14/57 (24%), Positives = 33/57 (57%)
Query: 353 VQKVIGDILGIQNITSISDSATLSDLGLDSLMAADVKNVLQSKFNISLTNEQIKELK 409
V+ VI D L ++ ++ + DLG DSL ++ L+ +F + +++E+ ++++
Sbjct: 10 VKAVIADKLQVEPEKVTLEARFIEDLGADSLDTVELIMGLEDEFGLEISDEEAEKIR 66
>2l3v_A ACP, acyl carrier protein; structural genomi seattle structural
genomics center for infectious disease, lipid binding
protein; NMR {Brucella melitensis}
Length = 79
Score = 28.4 bits (64), Expect = 1.4
Identities = 11/57 (19%), Positives = 29/57 (50%)
Query: 353 VQKVIGDILGIQNITSISDSATLSDLGLDSLMAADVKNVLQSKFNISLTNEQIKELK 409
V+K++ + LG+ ++ + DLG DSL ++ + +F + + ++ + +
Sbjct: 9 VKKIVVEHLGVDADKVTEGASFIDDLGADSLDTVELVMAFEEEFGVEIPDDAAETIL 65
>2ehs_A ACP, acyl carrier protein; lipid transport, structural genomics,
NPPSFA, national proje protein structural and functional
analyses; 1.30A {Aquifex aeolicus} PDB: 2eht_A
Length = 77
Score = 28.0 bits (63), Expect = 1.7
Identities = 13/57 (22%), Positives = 32/57 (56%)
Query: 353 VQKVIGDILGIQNITSISDSATLSDLGLDSLMAADVKNVLQSKFNISLTNEQIKELK 409
V+++I + LG++ ++ + DLG DSL ++ + +F I + +E ++++
Sbjct: 6 VKEIIAEQLGVEKEKITPEAKFVEDLGADSLDVVELIMAFEEEFGIEIPDEDAEKIQ 62
>2kwl_A ACP, acyl carrier protein; structural genomics, seattle structura
genomics center for infectious disease, ssgcid, lipid
bindi protein; NMR {Borrelia burgdorferi}
Length = 84
Score = 28.0 bits (63), Expect = 2.0
Identities = 13/57 (22%), Positives = 27/57 (47%)
Query: 353 VQKVIGDILGIQNITSISDSATLSDLGLDSLMAADVKNVLQSKFNISLTNEQIKELK 409
V+ +I + L + +DS + DL DSL ++ +L+ F+ + + E +
Sbjct: 14 VRSIISEQLDKKEDEITTDSRFVEDLNADSLDIYELLYLLEEAFDDKIPENEANEFE 70
>4dxe_H ACP, acyl carrier protein; acyl-carrier-protein synthase, type II
acid synthesis pathway; 2.51A {Staphylococcus aureus}
Length = 101
Score = 28.2 bits (63), Expect = 2.4
Identities = 16/57 (28%), Positives = 31/57 (54%)
Query: 353 VQKVIGDILGIQNITSISDSATLSDLGLDSLMAADVKNVLQSKFNISLTNEQIKELK 409
V+ +I D LG+ D++ DLG DSL A++ L+ +F + +E+ +++
Sbjct: 31 VKDIIVDRLGVDADKVTEDASFKDDLGADSLDIAELVMELEDEFGTEIPDEEAEKIN 87
>3gzm_A Acyl carrier protein; helix bundle, phosphopantetheine, fatty acid
biosynthesis, L synthesis, transit peptide, biosynthetic
protein; HET: PNS; 1.80A {Plasmodium falciparum} PDB:
3gzl_A* 2fq0_A* 2fq2_A*
Length = 81
Score = 27.6 bits (62), Expect = 2.8
Identities = 14/57 (24%), Positives = 31/57 (54%)
Query: 353 VQKVIGDILGIQNITSISDSATLSDLGLDSLMAADVKNVLQSKFNISLTNEQIKELK 409
++K+I L ++ +S DLG DSL ++ L+ KFN++++++ ++
Sbjct: 10 IKKIISKQLSVEEDKIQMNSNFTKDLGADSLDLVELIMALEEKFNVTISDQDALKIN 66
>2d5f_A Glycinin A3B4 subunit; soybean, globulin, 11S,SEED storage protein,
plant; 1.90A {Glycine max} PDB: 2d5h_A 1od5_A
Length = 493
Score = 29.1 bits (64), Expect = 3.7
Identities = 9/53 (16%), Positives = 18/53 (33%), Gaps = 2/53 (3%)
Query: 368 SISDSATLSDLGLDSLMAADVKNVLQSKFNISLTNEQIKELKFNAVESLLKVP 420
+ + A VL + +N+ Q+++LK+ L P
Sbjct: 443 VFKTHHNAVSSYIKDVFRAIPSEVLSNSYNLG--QSQVRQLKYQGNSGPLVNP 493
>3i4s_A Histidine triad protein; hydrolase, phosphatase, HIT superfamily,
PSI-2, NYSGXRC, STR genomics, protein structure
initiative; 1.75A {Bradyrhizobium japonicum}
Length = 149
Score = 28.1 bits (62), Expect = 4.1
Identities = 15/97 (15%), Positives = 38/97 (39%), Gaps = 18/97 (18%)
Query: 82 LVERIRNTEDFMNVEKDELCKVWSEQKIRKEWTVEDVINTNDLSALVFRFAVNLVISGHD 141
LV R + + +++++ + ++ +E R ++++ + L N+ G+
Sbjct: 42 LVPRRPDAVEIIDLDEVQQAQLMTEIS-RVSRALKEITKCDKL---------NIAALGNL 91
Query: 142 DDDIALHFNPRF--DVNYCVRNSCRNKVWGEEEKAAY 176
+ +H R D + VWG + A+
Sbjct: 92 VPQLHVHIIARRTGDAAW------PRPVWGVMQPLAH 122
>2l4b_A Acyl carrier protein; infectious disease, human granulocytic
anaplasmosis, ssgcid, structural genomics; NMR
{Anaplasma phagocytophilum}
Length = 88
Score = 27.0 bits (60), Expect = 4.1
Identities = 16/74 (21%), Positives = 38/74 (51%), Gaps = 6/74 (8%)
Query: 339 KNVTSGDVKQENVTVQKVIGDILGIQ--NITSISDSATLS-DLGLDSLMAADVKNVLQSK 395
++ S ++K + V + + L + +S + L+ D LDSL D+ L+ +
Sbjct: 2 GSMVSEEIKAQ---VMESVIGCLKLNDEQKQILSGTTNLAKDFNLDSLDFVDLIMSLEER 58
Query: 396 FNISLTNEQIKELK 409
F++ +++E ++L+
Sbjct: 59 FSLEISDEDAQKLE 72
>3ohe_A Histidine triad (HIT) protein; structural genomics, joint center
for structural genomics, J protein structure initiative,
PSI-biology; HET: MSE; 1.20A {Marinobacter aquaeolei}
Length = 137
Score = 28.1 bits (62), Expect = 4.4
Identities = 14/97 (14%), Positives = 33/97 (34%), Gaps = 18/97 (18%)
Query: 82 LVERIRNTEDFMNVEKDELCKVWSEQKIRKEWTVEDVINTNDLSALVFRFAVNLVISGHD 141
LV R+ + + ++ ++ E + ++ + + N+ G+
Sbjct: 37 LVPRVSGIREIYELPNEQQQRLLFESS-ALSEGMMELFGGDKM---------NVAALGNM 86
Query: 142 DDDIALHFNPRF--DVNYCVRNSCRNKVWGEEEKAAY 176
+ LH R+ D + VWG++ Y
Sbjct: 87 VPQLHLHHIVRYQGDPAW------PGPVWGKQPPVPY 117
>3ejb_A Acyl carrier protein; protein-protein complex, cytochrome P450
fold, carrier protein, 4-helix bundle, cytoplasm; HET:
ZMP HTG HEM; 2.00A {Escherichia coli} SCOP: a.28.1.1
PDB: 3ejd_A* 3eje_A*
Length = 97
Score = 27.4 bits (61), Expect = 4.6
Identities = 17/63 (26%), Positives = 36/63 (57%), Gaps = 12/63 (19%)
Query: 353 VQKVIGDILGIQNITSISDSATLSDLGLDSL------MAADVKNVLQSKFNISLTNEQIK 406
V+K+IG+ LG++ ++++ + DLG DSL MA L+ +F+ + +E+ +
Sbjct: 27 VKKIIGEQLGVKQEEVTNNASFVEDLGADSLDTVELVMA------LEEEFDTEIPDEEAE 80
Query: 407 ELK 409
++
Sbjct: 81 KIT 83
>1l0i_A Acyl carrier protein; acyl chain binding, fatty acid biosynt lipid
transport; HET: PSR; 1.20A {Escherichia coli} SCOP:
a.28.1.1 PDB: 3ny7_B* 2fhs_C 1l0h_A* 1acp_A 1t8k_A
2fac_A* 2fad_A* 2fae_A* 2k92_A 2k93_A 2k94_A 2l0q_A
Length = 78
Score = 26.4 bits (59), Expect = 5.5
Identities = 17/63 (26%), Positives = 36/63 (57%), Gaps = 12/63 (19%)
Query: 353 VQKVIGDILGIQNITSISDSATLSDLGLDSL------MAADVKNVLQSKFNISLTNEQIK 406
V+K+IG+ LG++ ++++ + DLG DSL MA L+ +F+ + +E+ +
Sbjct: 8 VKKIIGEQLGVKQEEVTNNASFVEDLGADSLDTVELVMA------LEEEFDTEIPDEEAE 61
Query: 407 ELK 409
++
Sbjct: 62 KMT 64
>2kkn_A Uncharacterized protein; protein phosphatase 2A homologue,
structural genomics, PSI- 2, protein structure
initiative; NMR {Thermotoga maritima}
Length = 178
Score = 28.0 bits (63), Expect = 5.6
Identities = 8/43 (18%), Positives = 13/43 (30%), Gaps = 8/43 (18%)
Query: 451 GVSINTNDLSALVFRFAVNLVISGH-------DDDDIALHFNP 486
G + D VF +++ GH + NP
Sbjct: 112 GAPWDLKDRLLKVFNEKPQVILFGHTHEPEDTVKAGV-RFLNP 153
>2jgp_A Tyrocidine synthetase 3; multifunctional enzyme, antibiotic
biosynthesis, condensatio domain, peptide bond
formation, ligase; 1.85A {Brevibacillus brevis}
Length = 520
Score = 27.9 bits (63), Expect = 9.0
Identities = 8/43 (18%), Positives = 18/43 (41%), Gaps = 3/43 (6%)
Query: 359 DILGIQNITSISDSATLSDLGLDSLMAADVKNVLQSKFNISLT 401
+L + + D LG SL A V + + +++ + +
Sbjct: 21 QVLNVPQV-GALDD--FFALGGHSLRAMRVLSSMHNEYQVDIP 60
>2dnw_A Acyl carrier protein; ACP, fatty acid biosynthesis, mitochondria,
NADH:ubiquinone oxidereductase, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 99
Score = 26.2 bits (58), Expect = 9.8
Identities = 13/57 (22%), Positives = 25/57 (43%)
Query: 353 VQKVIGDILGIQNITSISDSATLSDLGLDSLMAADVKNVLQSKFNISLTNEQIKELK 409
V V+ I +S + DLGLDSL ++ ++ +F + + ++L
Sbjct: 20 VLYVLKLYDKIDPEKLSVNSHFMKDLGLDSLDQVEIIMAMEDEFGFEIPDIDAEKLM 76
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.136 0.408
Gapped
Lambda K H
0.267 0.0661 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 8,251,641
Number of extensions: 495014
Number of successful extensions: 1405
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1306
Number of HSP's successfully gapped: 137
Length of query: 539
Length of database: 6,701,793
Length adjustment: 98
Effective length of query: 441
Effective length of database: 3,965,535
Effective search space: 1748800935
Effective search space used: 1748800935
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.0 bits)