BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11969
(170 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9C026|TRIM9_HUMAN E3 ubiquitin-protein ligase TRIM9 OS=Homo sapiens GN=TRIM9 PE=1
SV=1
Length = 710
Score = 115 bits (287), Expect = 2e-25, Method: Composition-based stats.
Identities = 56/135 (41%), Positives = 90/135 (66%), Gaps = 1/135 (0%)
Query: 35 QLLSEKARSTTEFIKRLKSIADLLNTDLSQNLQLLSEKARSTTEFIKRLKSIADLLNDNS 94
Q L E S+ E +K L ++ L + LSQ L LS++A+ EF+ +L+++ + +NS
Sbjct: 251 QCLEEGKHSSHE-VKALGAMWKLHKSQLSQALNGLSDRAKEAKEFLVQLRNMVQQIQENS 309
Query: 95 IEFESQIVAQCDALIKAIEDRKKQLVDAIRLEKESKQRILREQVSGCACKLQRTTALLQF 154
+EFE+ +VAQCDALI A+ RK QL+ + E E K +++R+Q+S C KL++TT L+++
Sbjct: 310 VEFEACLVAQCDALIDALNRRKAQLLARVNKEHEHKLKVVRDQISHCTVKLRQTTGLMEY 369
Query: 155 CIEALKETDAAAFLQ 169
C+E +KE D + FLQ
Sbjct: 370 CLEVIKENDPSGFLQ 384
>sp|Q29RQ5|TRIM9_BOVIN E3 ubiquitin-protein ligase TRIM9 OS=Bos taurus GN=TRIM9 PE=2 SV=1
Length = 710
Score = 114 bits (285), Expect = 3e-25, Method: Composition-based stats.
Identities = 56/135 (41%), Positives = 90/135 (66%), Gaps = 1/135 (0%)
Query: 35 QLLSEKARSTTEFIKRLKSIADLLNTDLSQNLQLLSEKARSTTEFIKRLKSIADLLNDNS 94
Q L E S+ E +K L ++ L + LSQ L LS++A+ EF+ +L+++ + +NS
Sbjct: 251 QCLEEGKHSSHE-VKALGAMWKLHKSQLSQALNGLSDRAKEAKEFLVQLRNMVQQIQENS 309
Query: 95 IEFESQIVAQCDALIKAIEDRKKQLVDAIRLEKESKQRILREQVSGCACKLQRTTALLQF 154
+EFE+ +VAQCDALI A+ RK QL+ + E E K +++R+Q+S C KL++TT L+++
Sbjct: 310 VEFEACLVAQCDALIDALNRRKAQLLARVNKEHEHKLKVVRDQISHCTVKLRQTTGLMEY 369
Query: 155 CIEALKETDAAAFLQ 169
C+E +KE D + FLQ
Sbjct: 370 CLEVIKENDPSGFLQ 384
>sp|Q8C7M3|TRIM9_MOUSE E3 ubiquitin-protein ligase TRIM9 OS=Mus musculus GN=Trim9 PE=1
SV=2
Length = 817
Score = 114 bits (285), Expect = 3e-25, Method: Composition-based stats.
Identities = 56/135 (41%), Positives = 90/135 (66%), Gaps = 1/135 (0%)
Query: 35 QLLSEKARSTTEFIKRLKSIADLLNTDLSQNLQLLSEKARSTTEFIKRLKSIADLLNDNS 94
Q L E S+ E +K L ++ L + LSQ L LS++A+ EF+ +L+++ + +NS
Sbjct: 251 QCLEEGKHSSHE-VKALGAMWKLHKSQLSQALNGLSDRAKEAKEFLVQLRTMVQQIQENS 309
Query: 95 IEFESQIVAQCDALIKAIEDRKKQLVDAIRLEKESKQRILREQVSGCACKLQRTTALLQF 154
+EFE+ +VAQCDALI A+ RK QL+ + E E K +++R+Q+S C KL++TT L+++
Sbjct: 310 VEFEACLVAQCDALIDALNRRKAQLLARVNKEHEHKLKVVRDQISHCTVKLRQTTGLMEY 369
Query: 155 CIEALKETDAAAFLQ 169
C+E +KE D + FLQ
Sbjct: 370 CLEVIKENDPSGFLQ 384
>sp|Q91ZY8|TRIM9_RAT E3 ubiquitin-protein ligase TRIM9 OS=Rattus norvegicus GN=Trim9
PE=1 SV=1
Length = 710
Score = 114 bits (285), Expect = 3e-25, Method: Composition-based stats.
Identities = 56/135 (41%), Positives = 90/135 (66%), Gaps = 1/135 (0%)
Query: 35 QLLSEKARSTTEFIKRLKSIADLLNTDLSQNLQLLSEKARSTTEFIKRLKSIADLLNDNS 94
Q L E S+ E +K L ++ L + LSQ L LS++A+ EF+ +L+++ + +NS
Sbjct: 251 QCLEEGKHSSHE-VKALGAMWKLHKSQLSQALNGLSDRAKEAKEFLVQLRTMVQQIQENS 309
Query: 95 IEFESQIVAQCDALIKAIEDRKKQLVDAIRLEKESKQRILREQVSGCACKLQRTTALLQF 154
+EFE+ +VAQCDALI A+ RK QL+ + E E K +++R+Q+S C KL++TT L+++
Sbjct: 310 VEFEACLVAQCDALIDALNRRKAQLLARVNKEHEHKLKVVRDQISHCTVKLRQTTGLMEY 369
Query: 155 CIEALKETDAAAFLQ 169
C+E +KE D + FLQ
Sbjct: 370 CLEVIKENDPSGFLQ 384
>sp|Q6ZTA4|TRI67_HUMAN Tripartite motif-containing protein 67 OS=Homo sapiens GN=TRIM67
PE=2 SV=3
Length = 783
Score = 98.6 bits (244), Expect = 2e-20, Method: Composition-based stats.
Identities = 46/134 (34%), Positives = 85/134 (63%)
Query: 36 LLSEKARSTTEFIKRLKSIADLLNTDLSQNLQLLSEKARSTTEFIKRLKSIADLLNDNSI 95
L E+ R +K L ++ LSQ L +S+KA+ EF+ +LK+I + +N +
Sbjct: 325 LCLEEGRHAKHEVKPLGAMWKQHKAQLSQALNGVSDKAKEAKEFLVQLKNILQQIQENGL 384
Query: 96 EFESQIVAQCDALIKAIEDRKKQLVDAIRLEKESKQRILREQVSGCACKLQRTTALLQFC 155
++E+ +VAQCDAL+ A+ +K +L+ + E+E K +++ +Q++ C KL+++T L+++C
Sbjct: 385 DYEACLVAQCDALVDALTRQKAKLLTKVTKEREHKLKMVWDQINHCTLKLRQSTGLMEYC 444
Query: 156 IEALKETDAAAFLQ 169
+E +KE D + FLQ
Sbjct: 445 LEVIKENDPSGFLQ 458
>sp|Q505D9|TRI67_MOUSE Tripartite motif-containing protein 67 OS=Mus musculus GN=Trim67
PE=2 SV=1
Length = 768
Score = 98.2 bits (243), Expect = 2e-20, Method: Composition-based stats.
Identities = 45/131 (34%), Positives = 84/131 (64%)
Query: 39 EKARSTTEFIKRLKSIADLLNTDLSQNLQLLSEKARSTTEFIKRLKSIADLLNDNSIEFE 98
E+ R + +K L + LSQ L +S+KA+ EF+ +LK+I + +N +++E
Sbjct: 315 EEGRHSKHEVKPLGATWKQHKAQLSQALNGVSDKAKEAKEFLVQLKNILQQIQENGLDYE 374
Query: 99 SQIVAQCDALIKAIEDRKKQLVDAIRLEKESKQRILREQVSGCACKLQRTTALLQFCIEA 158
+ +VAQCDAL+ A+ +K +L+ + E+E K +++ +Q++ C KL+++T L+++C+E
Sbjct: 375 ACLVAQCDALVDALTRQKAKLLTKVTKEREHKLKMVWDQINHCTLKLRQSTGLMEYCLEV 434
Query: 159 LKETDAAAFLQ 169
+KE D + FLQ
Sbjct: 435 IKEDDPSGFLQ 445
>sp|Q9UJV3|TRIM1_HUMAN Probable E3 ubiquitin-protein ligase MID2 OS=Homo sapiens GN=MID2
PE=1 SV=3
Length = 735
Score = 56.6 bits (135), Expect = 7e-08, Method: Composition-based stats.
Identities = 35/112 (31%), Positives = 57/112 (50%)
Query: 58 LNTDLSQNLQLLSEKARSTTEFIKRLKSIADLLNDNSIEFESQIVAQCDALIKAIEDRKK 117
L L NL L ++ + +L I + N+ E++++ +CD L++ I+ RK+
Sbjct: 239 LKQTLEMNLTNLVKRNSELENQMAKLIQICQQVEVNTAMHEAKLMEECDELVEIIQQRKQ 298
Query: 118 QLVDAIRLEKESKQRILREQVSGCACKLQRTTALLQFCIEALKETDAAAFLQ 169
+ I+ K K R L +QV+ C L+R+T L+ LKE D A FLQ
Sbjct: 299 MIAVKIKETKVMKLRKLAQQVANCRQCLERSTVLINQAEHILKENDQARFLQ 350
>sp|Q9QUS6|TRIM1_MOUSE Probable E3 ubiquitin-protein ligase MID2 OS=Mus musculus GN=Mid2
PE=2 SV=2
Length = 705
Score = 46.6 bits (109), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 45/77 (58%)
Query: 93 NSIEFESQIVAQCDALIKAIEDRKKQLVDAIRLEKESKQRILREQVSGCACKLQRTTALL 152
N+ E++++ +CD L++ I+ RK+ + I+ K K R L +QV+ C L+R+T L+
Sbjct: 274 NTAMHEAKLMEECDELVEIIQQRKQMIAVKIKETKVMKLRKLAQQVANCRQCLERSTVLI 333
Query: 153 QFCIEALKETDAAAFLQ 169
LKE D A FLQ
Sbjct: 334 NQAEHILKENDQARFLQ 350
>sp|P82458|TRI18_RAT Midline-1 OS=Rattus norvegicus GN=Mid1 PE=2 SV=1
Length = 667
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 59/114 (51%)
Query: 56 DLLNTDLSQNLQLLSEKARSTTEFIKRLKSIADLLNDNSIEFESQIVAQCDALIKAIEDR 115
D L +L NL L ++ + +L + N+ E+++ +CD LI+ I++R
Sbjct: 217 DKLKQNLESNLTNLIKRNTELETLLAKLIQTCQHVEVNASRQEAKLTEECDLLIEIIQER 276
Query: 116 KKQLVDAIRLEKESKQRILREQVSGCACKLQRTTALLQFCIEALKETDAAAFLQ 169
++ + I+ K + R L +Q++ C ++R+ +L+ +LKE D A FLQ
Sbjct: 277 RQIIGTKIKEGKVMRLRKLAQQIANCKQCIERSASLISQAEHSLKENDHARFLQ 330
>sp|O70583|TRI18_MOUSE Midline-1 OS=Mus musculus GN=Mid1 PE=1 SV=2
Length = 680
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 58/114 (50%)
Query: 56 DLLNTDLSQNLQLLSEKARSTTEFIKRLKSIADLLNDNSIEFESQIVAQCDALIKAIEDR 115
D L +L NL L ++ + +L + N+ E+++ +CD LI+ I+ R
Sbjct: 217 DKLKQNLESNLTNLIKRNTELETLLAKLIQTCQHVEVNASRQEAKLTEECDLLIEIIQQR 276
Query: 116 KKQLVDAIRLEKESKQRILREQVSGCACKLQRTTALLQFCIEALKETDAAAFLQ 169
++ + I+ K + R L +Q++ C L+R+ +L+ +LKE D A FLQ
Sbjct: 277 RQIIGTKIKEGKVIRLRKLAQQIANCKQCLERSASLISQAEHSLKENDHARFLQ 330
>sp|O15344|TRI18_HUMAN Midline-1 OS=Homo sapiens GN=MID1 PE=1 SV=1
Length = 667
Score = 41.2 bits (95), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 58/114 (50%)
Query: 56 DLLNTDLSQNLQLLSEKARSTTEFIKRLKSIADLLNDNSIEFESQIVAQCDALIKAIEDR 115
D L +L NL L ++ + +L + N+ E+++ +CD LI+ I+ R
Sbjct: 217 DKLKQNLESNLTNLIKRNTELETLLAKLIQTCQHVEVNASRQEAKLTEECDLLIEIIQQR 276
Query: 116 KKQLVDAIRLEKESKQRILREQVSGCACKLQRTTALLQFCIEALKETDAAAFLQ 169
++ + I+ K + R L +Q++ C ++R+ +L+ +LKE D A FLQ
Sbjct: 277 RQIIGTKIKEGKVMRLRKLAQQIANCKQCIERSASLISQAEHSLKENDHARFLQ 330
>sp|P82457|TRI18_MUSSP Midline-1 OS=Mus spretus GN=Mid1 PE=2 SV=1
Length = 667
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 58/114 (50%)
Query: 56 DLLNTDLSQNLQLLSEKARSTTEFIKRLKSIADLLNDNSIEFESQIVAQCDALIKAIEDR 115
D L +L NL L ++ + +L + N+ E+++ +CD LI+ I+ R
Sbjct: 217 DKLKQNLESNLTNLIKRNTELETLLAKLIQTCQHVEVNASRQEAKLTEECDLLIEIIQQR 276
Query: 116 KKQLVDAIRLEKESKQRILREQVSGCACKLQRTTALLQFCIEALKETDAAAFLQ 169
++ + I+ K + R L +Q++ C ++R+ +L+ +LKE D A FLQ
Sbjct: 277 RQIIGTKIKEGKVIRLRKLAQQIANCKQCIERSASLISQAEHSLKENDHARFLQ 330
>sp|Q8BYN5|FSD1L_MOUSE FSD1-like protein OS=Mus musculus GN=Fsd1l PE=2 SV=2
Length = 507
Score = 37.0 bits (84), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 47/94 (50%)
Query: 66 LQLLSEKARSTTEFIKRLKSIADLLNDNSIEFESQIVAQCDALIKAIEDRKKQLVDAIRL 125
+ L+ K+ FI L + +NS S++ + D+L ++D K+ ++ I+
Sbjct: 12 ISTLANKSDEIQNFIDTLNHTLKGVQENSSNILSELDEEFDSLYSILDDVKESMISTIKQ 71
Query: 126 EKESKQRILREQVSGCACKLQRTTALLQFCIEAL 159
E+ K + L+ Q+S C L+ + LL+F +L
Sbjct: 72 EQVRKSQELQSQLSQCNNALENSEELLEFATRSL 105
>sp|Q9BXM9|FSD1L_HUMAN FSD1-like protein OS=Homo sapiens GN=FSD1L PE=1 SV=2
Length = 530
Score = 36.2 bits (82), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 47/94 (50%)
Query: 66 LQLLSEKARSTTEFIKRLKSIADLLNDNSIEFESQIVAQCDALIKAIEDRKKQLVDAIRL 125
+ L+ K FI L + +NS S++ + D+L +++ K+ +++ I+
Sbjct: 44 ISTLANKNDEIQNFIDTLHHTLKGVQENSSNILSELDEEFDSLYSILDEVKESMINCIKQ 103
Query: 126 EKESKQRILREQVSGCACKLQRTTALLQFCIEAL 159
E+ K + L+ Q+S C L+ + LL+F +L
Sbjct: 104 EQARKSQELQSQISQCNNALENSEELLEFATRSL 137
>sp|Q91Z63|TRI63_RAT E3 ubiquitin-protein ligase TRIM63 OS=Rattus norvegicus GN=Trim63
PE=2 SV=1
Length = 351
Score = 35.4 bits (80), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 61/128 (47%), Gaps = 14/128 (10%)
Query: 48 IKRLKSIADLLNTDLSQNLQLLSEKARSTTEFIKRLKSIADLLNDNSIEFESQIVAQCDA 107
+ L+SI T+LS + +L I +L+ + +NS + + ++ + DA
Sbjct: 156 VAPLQSIFQGQKTELSNCISMLVAGNDRVQTIISQLEDSCRVTKENSHQVKEELSHKFDA 215
Query: 108 LIKAIEDRKKQLVDAIRLEKESKQRIL-------REQVSGCACKLQRTTALLQFCIEALK 160
L ++++K +L+ I E+E K + REQ L+++T L++ I++L
Sbjct: 216 LYAILDEKKSELLQRITQEQEEKLDFIEALILQYREQ-------LEKSTKLVETAIQSLD 268
Query: 161 ETDAAAFL 168
E A FL
Sbjct: 269 EPGGATFL 276
>sp|Q9U489|LIN41_CAEEL Protein lin-41 OS=Caenorhabditis elegans GN=lin-41 PE=2 SV=1
Length = 1147
Score = 35.0 bits (79), Expect = 0.21, Method: Composition-based stats.
Identities = 27/101 (26%), Positives = 44/101 (43%), Gaps = 6/101 (5%)
Query: 63 SQNLQLLSEKARSTTEFIKRLKSIADLLNDNSIEFESQIVAQCDALIKAIEDRKKQLVDA 122
SQ LQ EK T +K I D + N+ E++I A D + A+E+R+K+L+
Sbjct: 530 SQLLQWQCEKTGDT------IKQIIDGIVTNATTAENEIRAAFDTHVNALEERRKELLKR 583
Query: 123 IRLEKESKQRILREQVSGCACKLQRTTALLQFCIEALKETD 163
+ K K +L Q K +Q + + +D
Sbjct: 584 VETVKNLKLSVLISQAESLQSKQIDLQQAIQTATKLMDSSD 624
>sp|Q80WG7|TRI36_MOUSE E3 ubiquitin-protein ligase Trim36 OS=Mus musculus GN=Trim36 PE=1
SV=2
Length = 729
Score = 35.0 bits (79), Expect = 0.21, Method: Composition-based stats.
Identities = 29/122 (23%), Positives = 51/122 (41%), Gaps = 1/122 (0%)
Query: 48 IKRLKSIADLLNTDLSQNLQLLSEKARSTTEFIKRLKSIADLLNDNSIEFESQIVAQCDA 107
+ + S L LS+++ L K I L + N + + +A +
Sbjct: 246 VTTMSSAYKTLKEKLSKDIDFLIGKESQVKSQISELNLLMKETECNGERAKEEALAHFEK 305
Query: 108 LIKAIEDRKKQLVDAIRLEKESKQRILREQVSGCACKLQRTTALLQFCIEALKETDAAAF 167
L + +EDRK ++ AI K+ + Q+ L+ L+ + E LKETD + F
Sbjct: 306 LFEILEDRKSSVLKAIDASKKLRLDKFHTQMEEYQGLLE-NNGLVGYAQEVLKETDQSCF 364
Query: 168 LQ 169
+Q
Sbjct: 365 VQ 366
>sp|P24043|LAMA2_HUMAN Laminin subunit alpha-2 OS=Homo sapiens GN=LAMA2 PE=1 SV=4
Length = 3122
Score = 34.7 bits (78), Expect = 0.30, Method: Composition-based stats.
Identities = 26/100 (26%), Positives = 51/100 (51%), Gaps = 10/100 (10%)
Query: 29 DLSQNLQLLSEKARSTTEFIKRLKSIADLLNTDLSQNLQLLSEKARSTTEFIKRLKSIAD 88
D + LQ + +KAR + K + +A + T+L QNL L + + + + ++
Sbjct: 2029 DTAAKLQAVKDKARQANDTAKDV--LAQI--TELHQNLDGLKKNYNKLADSVAKTNAV-- 2082
Query: 89 LLNDNSIEFESQIVAQCDALIKAIEDRKKQLVDAIRLEKE 128
+ D S +++I+A DA +K +E +L+D ++ KE
Sbjct: 2083 -VKDPS---KNKIIADADATVKNLEQEADRLIDKLKPIKE 2118
>sp|Q8IWZ5|TRI42_HUMAN Tripartite motif-containing protein 42 OS=Homo sapiens GN=TRIM42
PE=2 SV=2
Length = 723
Score = 33.9 bits (76), Expect = 0.58, Method: Composition-based stats.
Identities = 29/114 (25%), Positives = 56/114 (49%), Gaps = 14/114 (12%)
Query: 70 SEKARSTTEFIKRLKSIADLLNDNSIEF---ESQIVAQCDALIKAI-----------EDR 115
SE+A S I + K++ ++++ +EF ++ A +A K I +++
Sbjct: 331 SERAASLFSAIAKFKAVRYEIDNDLMEFNILKNSFKADKEAKRKEIRNGFLKLRSILQEK 390
Query: 116 KKQLVDAIRLEKESKQRILREQVSGCACKLQRTTALLQFCIEALKETDAAAFLQ 169
+K +++ I + S+Q+ + + V K+ L+ + EALKET AFLQ
Sbjct: 391 EKIIMEQIENLEVSRQKEIEKYVYVTTMKVNEMDGLIAYSKEALKETGQVAFLQ 444
>sp|Q9BYV2|TRI54_HUMAN Tripartite motif-containing protein 54 OS=Homo sapiens GN=TRIM54
PE=1 SV=3
Length = 358
Score = 33.5 bits (75), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 26/122 (21%), Positives = 61/122 (50%)
Query: 48 IKRLKSIADLLNTDLSQNLQLLSEKARSTTEFIKRLKSIADLLNDNSIEFESQIVAQCDA 107
+ L +I ++LS + +L I +++ + + DNS + + + ++
Sbjct: 160 VAPLPTIYKRQKSELSDGIAMLVAGNDRVQAVITQMEEVCQTIEDNSRRQKQLLNQRFES 219
Query: 108 LIKAIEDRKKQLVDAIRLEKESKQRILREQVSGCACKLQRTTALLQFCIEALKETDAAAF 167
L +E+RK +L+ A+ E+E K + +R + L+ ++ L++ I++++E A +
Sbjct: 220 LCAVLEERKGELLQALAREQEEKLQRVRGLIRQYGDHLEASSKLVESAIQSMEEPQMALY 279
Query: 168 LQ 169
LQ
Sbjct: 280 LQ 281
>sp|Q5REJ9|TRI54_PONAB Tripartite motif-containing protein 54 OS=Pongo abelii GN=TRIM54
PE=2 SV=1
Length = 358
Score = 33.1 bits (74), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 26/122 (21%), Positives = 61/122 (50%)
Query: 48 IKRLKSIADLLNTDLSQNLQLLSEKARSTTEFIKRLKSIADLLNDNSIEFESQIVAQCDA 107
+ L +I ++LS + +L I +++ + + DNS + + + ++
Sbjct: 160 VAPLPTIYKRQKSELSDGIAMLVAGNDRVQAVITQMEEVCQTIEDNSRRQKQLLNQRFES 219
Query: 108 LIKAIEDRKKQLVDAIRLEKESKQRILREQVSGCACKLQRTTALLQFCIEALKETDAAAF 167
L +E+RK +L+ A+ E+E K + +R + L+ ++ L++ I++++E A +
Sbjct: 220 LCAVLEERKGELLQALAREQEEKLQRVRGLIRQYGDHLEASSKLVETAIQSMEEPQMALY 279
Query: 168 LQ 169
LQ
Sbjct: 280 LQ 281
>sp|Q9D2H5|TRI42_MOUSE Tripartite motif-containing protein 42 OS=Mus musculus GN=Trim42
PE=2 SV=2
Length = 723
Score = 33.1 bits (74), Expect = 0.85, Method: Composition-based stats.
Identities = 33/147 (22%), Positives = 67/147 (45%), Gaps = 14/147 (9%)
Query: 37 LSEKARSTTEFIKRLKSIADLLNTDLSQNLQLLSEKARSTTEFIKRLKSIADLLNDNSIE 96
++E RS + + IA D + SE++ + I + K++ ++++ +E
Sbjct: 298 INEYCRSDNQLLCAFCKIAFHNGHDTVSLIDACSERSAALFSAIAKFKAVRYEIDNDLME 357
Query: 97 F---ESQIVAQCDALIKAI-----------EDRKKQLVDAIRLEKESKQRILREQVSGCA 142
F +S A +A K + ++++K +++ I + S+Q+ + + V
Sbjct: 358 FNILKSSFKADKEAKRKEVRNGFLKLRAILQEKEKIIMEQIENLEVSRQKEIEKYVYITT 417
Query: 143 CKLQRTTALLQFCIEALKETDAAAFLQ 169
K+ L+ + EALKET AFLQ
Sbjct: 418 MKVNEMDGLIAYSKEALKETGQVAFLQ 444
>sp|Q9ERP3|TRI54_MOUSE Tripartite motif-containing protein 54 OS=Mus musculus GN=Trim54
PE=1 SV=1
Length = 366
Score = 32.7 bits (73), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/122 (21%), Positives = 60/122 (49%)
Query: 48 IKRLKSIADLLNTDLSQNLQLLSEKARSTTEFIKRLKSIADLLNDNSIEFESQIVAQCDA 107
+ L +I ++LS + +L I +++ + + DNS + + + +
Sbjct: 160 VAPLPTIYKRQKSELSDGIAMLVAGNDRVQAVITQMEEVCQTIEDNSRRQKQLLNQRFET 219
Query: 108 LIKAIEDRKKQLVDAIRLEKESKQRILREQVSGCACKLQRTTALLQFCIEALKETDAAAF 167
L +E+RK +L+ A+ E+E K + +R + L+ ++ L++ I++++E A +
Sbjct: 220 LCAVLEERKGELLQALAREQEEKLQRVRGLIRQYGDHLEGSSKLVESAIQSMEEPQMALY 279
Query: 168 LQ 169
LQ
Sbjct: 280 LQ 281
>sp|Q9NQ86|TRI36_HUMAN E3 ubiquitin-protein ligase TRIM36 OS=Homo sapiens GN=TRIM36 PE=2
SV=2
Length = 728
Score = 32.7 bits (73), Expect = 1.3, Method: Composition-based stats.
Identities = 27/122 (22%), Positives = 51/122 (41%), Gaps = 1/122 (0%)
Query: 48 IKRLKSIADLLNTDLSQNLQLLSEKARSTTEFIKRLKSIADLLNDNSIEFESQIVAQCDA 107
+ + S L LS+++ L K I L + N + + + +
Sbjct: 246 VTTMSSAYKTLKEKLSKDIDYLIGKESQVKSQISELNLLMKETECNGERAKEEAITHFEK 305
Query: 108 LIKAIEDRKKQLVDAIRLEKESKQRILREQVSGCACKLQRTTALLQFCIEALKETDAAAF 167
L + +E+RK ++ AI K+ + + Q+ L+ L+ + E LKETD + F
Sbjct: 306 LFEVLEERKSSVLKAIDSSKKLRLDKFQTQMEEYQGLLE-NNGLVGYAQEVLKETDQSCF 364
Query: 168 LQ 169
+Q
Sbjct: 365 VQ 366
>sp|Q9DBZ1|IKIP_MOUSE Inhibitor of nuclear factor kappa-B kinase-interacting protein
OS=Mus musculus GN=Ikbip PE=1 SV=2
Length = 373
Score = 32.0 bits (71), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 50/83 (60%), Gaps = 15/83 (18%)
Query: 52 KSIADLLNTD--LSQNLQLLSEKARSTTEFIKRLKSIADLLNDNSIEFESQI-------- 101
+SI D+ ++ L+Q +Q L+EK ++ T+F KR ++A++++D ++ F+S++
Sbjct: 126 RSIRDIETSEEMLTQKMQNLNEKFQNITDFWKR--TLAEMIDDTAV-FKSEVKDTHSEVT 182
Query: 102 --VAQCDALIKAIEDRKKQLVDA 122
+ D IK++ +R K L D+
Sbjct: 183 LKINSADQEIKSLTERLKDLEDS 205
>sp|Q38HM4|TRI63_MOUSE E3 ubiquitin-protein ligase TRIM63 OS=Mus musculus GN=Trim63 PE=1
SV=1
Length = 350
Score = 32.0 bits (71), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 59/128 (46%), Gaps = 14/128 (10%)
Query: 48 IKRLKSIADLLNTDLSQNLQLLSEKARSTTEFIKRLKSIADLLNDNSIEFESQIVAQCDA 107
+ L+SI T+LS + +L I +L + +NS + + ++ + D
Sbjct: 156 VAPLQSIFQGQKTELSNCISMLVAGNDRVQTIISQLVDSCRVTKENSHQVKEELSQKFDT 215
Query: 108 LIKAIEDRKKQLVDAIRLEKESKQRIL-------REQVSGCACKLQRTTALLQFCIEALK 160
L ++++K +L+ I E+E K + REQ L+++T L++ I++L
Sbjct: 216 LYAILDEKKSELLQRITQEQEEKLGFIEALILQYREQ-------LEKSTKLVETAIQSLD 268
Query: 161 ETDAAAFL 168
E A FL
Sbjct: 269 EPGGATFL 276
>sp|Q6PFE3|RA54B_MOUSE DNA repair and recombination protein RAD54B OS=Mus musculus
GN=Rad54b PE=2 SV=1
Length = 886
Score = 32.0 bits (71), Expect = 1.9, Method: Composition-based stats.
Identities = 39/151 (25%), Positives = 66/151 (43%), Gaps = 21/151 (13%)
Query: 26 LLTDLSQNLQLLSEKARSTTEFIKRLKSIADLLNTDLSQNLQLL-SEKARSTTEFIKRLK 84
L+++ Q L +L E + RL T +SQ ++ S ++ +T+FI L
Sbjct: 643 LVSNYRQTLNVLEEVCKRHGYACARLDG-----QTPVSQRQHIVDSFNSKYSTDFIFLLS 697
Query: 85 SIADLLNDNSIEFESQIVAQCD--------ALIKAIEDRKKQLVDAIRL-------EKES 129
S A + N I I+ D A+ + D +K V RL EK
Sbjct: 698 SKAGGVGLNLIGGSHLILYDIDWNPATDIQAMSRVWRDGQKHPVHIYRLLTTGTIEEKIY 757
Query: 130 KQRILREQVSGCACKLQRTTALLQFCIEALK 160
+++I ++ +SG L R++ +QF +E LK
Sbjct: 758 QRQISKQGLSGAVVDLTRSSEHIQFSVEELK 788
>sp|Q58D15|TRI54_BOVIN Tripartite motif-containing protein 54 OS=Bos taurus GN=TRIM54 PE=2
SV=1
Length = 366
Score = 31.6 bits (70), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 25/122 (20%), Positives = 60/122 (49%)
Query: 48 IKRLKSIADLLNTDLSQNLQLLSEKARSTTEFIKRLKSIADLLNDNSIEFESQIVAQCDA 107
+ L +I ++LS + +L I +++ + + +NS + + + +
Sbjct: 160 VAPLPTIYKRQKSELSDGIAMLVAGNDRVQAVITQMEEVCQTIEENSRRQKQLLNQRFEG 219
Query: 108 LIKAIEDRKKQLVDAIRLEKESKQRILREQVSGCACKLQRTTALLQFCIEALKETDAAAF 167
L +E+RK +L+ A+ E+E K + +R + L+ ++ L++ I++++E A +
Sbjct: 220 LCAVLEERKGELLQALAREQEEKLQRVRGLIRQYGDHLEASSKLVESAIQSMEEPQMALY 279
Query: 168 LQ 169
LQ
Sbjct: 280 LQ 281
>sp|P12783|PGKY_WHEAT Phosphoglycerate kinase, cytosolic OS=Triticum aestivum PE=2 SV=1
Length = 401
Score = 31.6 bits (70), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 24/104 (23%), Positives = 47/104 (45%), Gaps = 16/104 (15%)
Query: 30 LSQNLQLLSEKARSTTEFIKRLKSIADLLNTDLSQNLQLLSEKARSTTEFIKRL--KSIA 87
L +N++ E+ ++ EF K+L S+ADL D + +A ++TE + + S+A
Sbjct: 117 LLENVRFYKEEEKNDPEFAKKLASVADLYVNDAFGT----AHRAHASTEGVTKFLRPSVA 172
Query: 88 DLLNDNSIEFESQIVAQCDALIKAIEDRKKQLVDAIRLEKESKQ 131
L +++ L+ A+ + KK + K S +
Sbjct: 173 GFLMQKELDY----------LVGAVANPKKPFAAIVGGSKVSSK 206
>sp|P0CR86|CLU_CRYNJ Clustered mitochondria protein homolog OS=Cryptococcus neoformans
var. neoformans serotype D (strain JEC21 / ATCC MYA-565)
GN=CLU1 PE=3 SV=1
Length = 1502
Score = 31.2 bits (69), Expect = 2.9, Method: Composition-based stats.
Identities = 34/139 (24%), Positives = 65/139 (46%), Gaps = 13/139 (9%)
Query: 20 AALVFKLLTDLSQNLQLLSEKARST-----TEFIKRLKSIADLLNTD-LSQNLQLLSEKA 73
A +V + + DLS +L L + ST I+ +S+ L+ L+ ++ E A
Sbjct: 1266 AGIVLQSMNDLSLSLSLQKQAYESTLACFGPNHIQTGQSLHQLVQGHFLAGDMASALETA 1325
Query: 74 RSTTEFIK-RLKSIADLLNDNSIEFESQIVAQCDALIKAIEDRKKQLVDAIRLEKESKQR 132
+ E K RL N + E++ V A+I+ ++R+K+ +A++ E + +
Sbjct: 1326 KQALEIFKARLGE-----EHNQTKEEAKNVELLTAVIEN-QERQKEREEAVKKEATERLK 1379
Query: 133 ILREQVSGCACKLQRTTAL 151
+ RE++ G A R T +
Sbjct: 1380 MARERIGGGAASTSRPTGI 1398
>sp|P0CR87|CLU_CRYNB Clustered mitochondria protein homolog OS=Cryptococcus neoformans
var. neoformans serotype D (strain B-3501A) GN=CLU1 PE=3
SV=1
Length = 1502
Score = 31.2 bits (69), Expect = 2.9, Method: Composition-based stats.
Identities = 34/139 (24%), Positives = 65/139 (46%), Gaps = 13/139 (9%)
Query: 20 AALVFKLLTDLSQNLQLLSEKARST-----TEFIKRLKSIADLLNTD-LSQNLQLLSEKA 73
A +V + + DLS +L L + ST I+ +S+ L+ L+ ++ E A
Sbjct: 1266 AGIVLQSMNDLSLSLSLQKQAYESTLACFGPNHIQTGQSLHQLVQGHFLAGDMASALETA 1325
Query: 74 RSTTEFIK-RLKSIADLLNDNSIEFESQIVAQCDALIKAIEDRKKQLVDAIRLEKESKQR 132
+ E K RL N + E++ V A+I+ ++R+K+ +A++ E + +
Sbjct: 1326 KQALEIFKARLGE-----EHNQTKEEAKNVELLTAVIEN-QERQKEREEAVKKEATERLK 1379
Query: 133 ILREQVSGCACKLQRTTAL 151
+ RE++ G A R T +
Sbjct: 1380 MARERIGGGAASTSRPTGI 1398
>sp|O75382|TRIM3_HUMAN Tripartite motif-containing protein 3 OS=Homo sapiens GN=TRIM3 PE=1
SV=2
Length = 744
Score = 31.2 bits (69), Expect = 3.5, Method: Composition-based stats.
Identities = 25/118 (21%), Positives = 52/118 (44%)
Query: 51 LKSIADLLNTDLSQNLQLLSEKARSTTEFIKRLKSIADLLNDNSIEFESQIVAQCDALIK 110
L+ + + L + L+ + + + I + I+ L + E +QI A + L +
Sbjct: 151 LRDVVEQHKAALQRQLEAVRGRLPQLSAAIALVGGISQQLQERKAEALAQISAAFEDLEQ 210
Query: 111 AIEDRKKQLVDAIRLEKESKQRILREQVSGCACKLQRTTALLQFCIEALKETDAAAFL 168
A++ RK+ LV + +KQ++L+ Q+ + + F +AL+ A L
Sbjct: 211 ALQQRKQALVSDLETICGAKQKVLQSQLDTLRQGQEHIGSSCSFAEQALRLGSAPEVL 268
>sp|Q969Q1|TRI63_HUMAN E3 ubiquitin-protein ligase TRIM63 OS=Homo sapiens GN=TRIM63 PE=1
SV=1
Length = 353
Score = 30.8 bits (68), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 26/121 (21%), Positives = 58/121 (47%)
Query: 48 IKRLKSIADLLNTDLSQNLQLLSEKARSTTEFIKRLKSIADLLNDNSIEFESQIVAQCDA 107
+ L+S+ T+L+ + +L I +L+ + +NS + + ++ + D
Sbjct: 156 VAPLQSVFQGQKTELNNCISMLVAGNDRVQTIITQLEDSRRVTKENSHQVKEELSQKFDT 215
Query: 108 LIKAIEDRKKQLVDAIRLEKESKQRILREQVSGCACKLQRTTALLQFCIEALKETDAAAF 167
L ++++K +L+ I E+E K + + +L ++T L++ I++L E A F
Sbjct: 216 LYAILDEKKSELLQRITQEQEKKLSFIEALIQQYQEQLDKSTKLVETAIQSLDEPGGATF 275
Query: 168 L 168
L
Sbjct: 276 L 276
>sp|Q5XIH6|TRI54_RAT Tripartite motif-containing protein 54 OS=Rattus norvegicus
GN=Trim54 PE=2 SV=1
Length = 364
Score = 30.8 bits (68), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 27/123 (21%), Positives = 62/123 (50%), Gaps = 2/123 (1%)
Query: 48 IKRLKSIADLLNTDLSQNLQLLSEKARSTTEFIKRLKSIADLLNDNSIEFESQIVAQCDA 107
+ L +I ++LS + +L I +++ + + DNS + + + +
Sbjct: 160 VAPLPTIYKRQKSELSDGIAMLVAGNDRVQAVITQMEEVCQTIEDNSRRQKQLLNQKFET 219
Query: 108 LIKAIEDRKKQLVDAI-RLEKESKQRILREQVSGCACKLQRTTALLQFCIEALKETDAAA 166
L +E+RK +L+ A+ R+++E QR+ R + L+ ++ L++ I++++E A
Sbjct: 220 LCAVLEERKGELLQALARVQEEKLQRV-RSLIRQYGDHLEASSKLVESAIQSMEEPQMAL 278
Query: 167 FLQ 169
+LQ
Sbjct: 279 YLQ 281
>sp|P12782|PGKH_WHEAT Phosphoglycerate kinase, chloroplastic OS=Triticum aestivum PE=2
SV=1
Length = 480
Score = 30.8 bits (68), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 9/75 (12%)
Query: 23 VFKLLTDLS-------QNLQLLSEKARSTTEFIKRLKSIADLLNTDLSQNLQLLSEKARS 75
V KL+ DL+ +N++ E+ ++ EF K+L S+ADL D
Sbjct: 174 VEKLVADLANGAVLLLENVRFYKEEEKNDPEFAKKLASLADLFVNDAFGTAHRAHASTEG 233
Query: 76 TTEFIKRLKSIADLL 90
T+F+K S+A L
Sbjct: 234 VTKFLK--PSVAGFL 246
>sp|O70277|TRIM3_RAT Tripartite motif-containing protein 3 OS=Rattus norvegicus GN=Trim3
PE=1 SV=1
Length = 744
Score = 30.4 bits (67), Expect = 5.7, Method: Composition-based stats.
Identities = 25/118 (21%), Positives = 52/118 (44%)
Query: 51 LKSIADLLNTDLSQNLQLLSEKARSTTEFIKRLKSIADLLNDNSIEFESQIVAQCDALIK 110
L+ + + L + L+ + + + I + I+ L + E +QI A + L +
Sbjct: 151 LRDVVEQHKAALQRQLEAVRGRLPQLSAAIALVGGISQQLQERKAEALAQISAAFEDLEQ 210
Query: 111 AIEDRKKQLVDAIRLEKESKQRILREQVSGCACKLQRTTALLQFCIEALKETDAAAFL 168
A++ RK+ LV + +KQ++L+ Q+ + + F +AL+ A L
Sbjct: 211 ALQQRKQALVSDLESICGAKQKVLQTQLDTLRQGQEHIGSSCSFAEQALRLGSAPEVL 268
>sp|Q9R1R2|TRIM3_MOUSE Tripartite motif-containing protein 3 OS=Mus musculus GN=Trim3 PE=1
SV=1
Length = 744
Score = 30.4 bits (67), Expect = 6.3, Method: Composition-based stats.
Identities = 25/118 (21%), Positives = 52/118 (44%)
Query: 51 LKSIADLLNTDLSQNLQLLSEKARSTTEFIKRLKSIADLLNDNSIEFESQIVAQCDALIK 110
L+ + + L + L+ + + + I + I+ L + E +QI A + L +
Sbjct: 151 LRDVVEQHKAALQRQLEAVRGRLPQLSAAIALVGGISQQLQERKAEALAQISAAFEDLEQ 210
Query: 111 AIEDRKKQLVDAIRLEKESKQRILREQVSGCACKLQRTTALLQFCIEALKETDAAAFL 168
A++ RK+ LV + +KQ++L+ Q+ + + F +AL+ A L
Sbjct: 211 ALQQRKQALVSDLESICGAKQKVLQTQLDTLRQGQEHIGSSCSFAEQALRLGSAPEVL 268
>sp|Q55FG3|VP13C_DICDI Putative vacuolar protein sorting-associated protein 13C
OS=Dictyostelium discoideum GN=tipC PE=3 SV=1
Length = 3848
Score = 30.0 bits (66), Expect = 7.3, Method: Composition-based stats.
Identities = 20/84 (23%), Positives = 45/84 (53%), Gaps = 17/84 (20%)
Query: 83 LKSIADLLNDNSIEFESQIVAQCDALIKAIEDRKKQLVDAIRLEKESKQ----------- 131
LKS+ +LL+ N EF S+I+ ++ + + +K+Q ++ ++L++E +
Sbjct: 1603 LKSLIELLDGNLSEFSSEILNDANS---SFDQQKQQEIEKLKLQQEIEDNNNDNEDEQVN 1659
Query: 132 ---RILREQVSGCACKLQRTTALL 152
++++EQV CKL + + +
Sbjct: 1660 KLLQLIKEQVGYTYCKLGKFSIMF 1683
>sp|Q60675|LAMA2_MOUSE Laminin subunit alpha-2 OS=Mus musculus GN=Lama2 PE=1 SV=1
Length = 3106
Score = 30.0 bits (66), Expect = 8.4, Method: Composition-based stats.
Identities = 24/103 (23%), Positives = 49/103 (47%), Gaps = 10/103 (9%)
Query: 26 LLTDLSQNLQLLSEKARSTTEFIKRLKSIADLLNTDLSQNLQLLSEKARSTTEFIKRLKS 85
+ D + LQ + EKAR + K + +A + DL QNL L + + + + +
Sbjct: 2022 ITNDTAAKLQAVKEKAREANDTAKAV--LAQV--KDLHQNLDGLKQNYNKLADSVAKTNA 2077
Query: 86 IADLLNDNSIEFESQIVAQCDALIKAIEDRKKQLVDAIRLEKE 128
+ + D S +++I+A ++ +E +L+D ++ KE
Sbjct: 2078 V---VKDPS---KNKIIADAGTSVRNLEQEADRLIDKLKPIKE 2114
>sp|Q39FR0|SYH_BURS3 Histidine--tRNA ligase OS=Burkholderia sp. (strain 383) GN=hisS
PE=3 SV=1
Length = 446
Score = 29.6 bits (65), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 6/74 (8%)
Query: 32 QNLQLLSEKARSTTEFIKRLKSIADLLNTD-----LSQNLQLLSEKARSTTEFIKRLKSI 86
+L L E+A E IK L+ AD+L+ D + L++L K + E + +
Sbjct: 172 NSLGLAEERAAHRVELIKYLEQFADVLDEDAKRRLYTNPLRVLDTKNPALQEIAQNAPKL 231
Query: 87 ADLLNDNS-IEFES 99
D L D S FE
Sbjct: 232 IDFLGDESRAHFEG 245
>sp|Q0BEW8|SYH_BURCM Histidine--tRNA ligase OS=Burkholderia ambifaria (strain ATCC
BAA-244 / AMMD) GN=hisS PE=3 SV=1
Length = 446
Score = 29.6 bits (65), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 6/74 (8%)
Query: 32 QNLQLLSEKARSTTEFIKRLKSIADLLNTD-----LSQNLQLLSEKARSTTEFIKRLKSI 86
+L L E+A E IK L+ AD+L+ D + L++L K + E + +
Sbjct: 172 NSLGLAEERAAHRVELIKYLEQFADVLDEDAKRRLYTNPLRVLDTKNPALQEIAQNAPKL 231
Query: 87 ADLLNDNS-IEFES 99
D L D S FE
Sbjct: 232 IDFLGDESRAHFEG 245
>sp|B1YR43|SYH_BURA4 Histidine--tRNA ligase OS=Burkholderia ambifaria (strain MC40-6)
GN=hisS PE=3 SV=1
Length = 446
Score = 29.6 bits (65), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 6/74 (8%)
Query: 32 QNLQLLSEKARSTTEFIKRLKSIADLLNTD-----LSQNLQLLSEKARSTTEFIKRLKSI 86
+L L E+A E IK L+ AD+L+ D + L++L K + E + +
Sbjct: 172 NSLGLAEERAAHRVELIKYLEQFADVLDEDAKRRLYTNPLRVLDTKNPALQEIAQNAPKL 231
Query: 87 ADLLNDNS-IEFES 99
D L D S FE
Sbjct: 232 IDFLGDESRAHFEG 245
>sp|Q42961|PGKH_TOBAC Phosphoglycerate kinase, chloroplastic OS=Nicotiana tabacum PE=2
SV=1
Length = 481
Score = 29.6 bits (65), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 23/100 (23%), Positives = 42/100 (42%), Gaps = 12/100 (12%)
Query: 32 QNLQLLSEKARSTTEFIKRLKSIADLLNTDLSQNLQLLSEKARSTTEFIKRLKSIADLLN 91
+N++ E+ ++ EF K+L S+ADL D T+F+K S+A L
Sbjct: 193 ENVRFYKEEEKNEPEFAKKLASLADLYVNDAFGTAHRAHASTEGVTKFLK--PSVAGFL- 249
Query: 92 DNSIEFESQIVAQCDALIKAIEDRKKQLVDAIRLEKESKQ 131
+ + D L+ A+ + K+ + K S +
Sbjct: 250 ---------LQKELDYLVGAVSNPKRPFAAIVGGSKVSSK 280
>sp|Q9LD57|PGKH1_ARATH Phosphoglycerate kinase 1, chloroplastic OS=Arabidopsis thaliana
GN=PGK1 PE=1 SV=1
Length = 481
Score = 29.6 bits (65), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 23/100 (23%), Positives = 42/100 (42%), Gaps = 12/100 (12%)
Query: 32 QNLQLLSEKARSTTEFIKRLKSIADLLNTDLSQNLQLLSEKARSTTEFIKRLKSIADLLN 91
+N++ E+ ++ EF K+L S+ADL D T+F+K S+A L
Sbjct: 194 ENVRFYKEEEKNDPEFAKKLASLADLYVNDAFGTAHRAHASTEGVTKFLK--PSVAGFL- 250
Query: 92 DNSIEFESQIVAQCDALIKAIEDRKKQLVDAIRLEKESKQ 131
+ + D L+ A+ + K+ + K S +
Sbjct: 251 ---------LQKELDYLVGAVSNPKRPFAAIVGGSKVSSK 281
>sp|P29409|PGKH_SPIOL Phosphoglycerate kinase, chloroplastic (Fragment) OS=Spinacia
oleracea PE=2 SV=2
Length = 433
Score = 29.6 bits (65), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 43/102 (42%), Gaps = 12/102 (11%)
Query: 30 LSQNLQLLSEKARSTTEFIKRLKSIADLLNTDLSQNLQLLSEKARSTTEFIKRLKSIADL 89
L +N++ E+ ++ EF K+L S+ADL D T+F+K S+A
Sbjct: 144 LLENVRFYKEEEKNDPEFAKKLASLADLYVNDAFGTAHRAHASTEGVTKFLK--PSVAGF 201
Query: 90 LNDNSIEFESQIVAQCDALIKAIEDRKKQLVDAIRLEKESKQ 131
L + + D L+ A+ + K+ + K S +
Sbjct: 202 L----------LQKELDYLVGAVSNPKRPFAAIVGGSKVSSK 233
>sp|A5DLR3|DBP10_PICGU ATP-dependent RNA helicase DBP10 OS=Meyerozyma guilliermondii
(strain ATCC 6260 / CBS 566 / DSM 6381 / JCM 1539 / NBRC
10279 / NRRL Y-324) GN=DBP10 PE=3 SV=2
Length = 914
Score = 29.6 bits (65), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 29/125 (23%), Positives = 63/125 (50%), Gaps = 7/125 (5%)
Query: 25 KLLTDLSQNLQLLSEKAR--STTEFIKRLKSIADLLNTDLSQNLQLLSEKARSTTEFIKR 82
+ + D++ ++L + R ++ E +KR K I D D Q+L + + +F+ +
Sbjct: 568 RTIRDVANKGEILYYRTRQPASQESVKRAKEIMDTGAWD-DQHLLFGANLEKEKEKFLAK 626
Query: 83 LKSIADL-LNDNSIEFESQIVAQCDALIKAIEDRKKQLVDAIRLEKESKQRILREQVSGC 141
L AD + + EF ++ D+L++ + R++Q+ R KE KQ + +E+++G
Sbjct: 627 L---ADRKVKETVFEFRNKGQRDEDSLVEFMHKRRRQIAPIQRRAKERKQLLEKERMAGL 683
Query: 142 ACKLQ 146
++
Sbjct: 684 THGIE 688
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.131 0.343
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,813,268
Number of Sequences: 539616
Number of extensions: 1472439
Number of successful extensions: 8978
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 237
Number of HSP's that attempted gapping in prelim test: 8725
Number of HSP's gapped (non-prelim): 477
length of query: 170
length of database: 191,569,459
effective HSP length: 109
effective length of query: 61
effective length of database: 132,751,315
effective search space: 8097830215
effective search space used: 8097830215
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.6 bits)