Query psy11969
Match_columns 170
No_of_seqs 103 out of 721
Neff 8.2
Searched_HMMs 46136
Date Fri Aug 16 15:16:06 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11969.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11969hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4367|consensus 99.5 3E-13 6.5E-18 112.2 12.4 137 33-170 246-382 (699)
2 smart00502 BBC B-Box C-termina 99.4 1.5E-11 3.2E-16 87.0 15.8 111 59-169 2-112 (127)
3 PF12126 DUF3583: Protein of u 95.9 0.49 1.1E-05 38.3 13.5 82 79-160 18-99 (324)
4 PF07139 DUF1387: Protein of u 95.0 0.78 1.7E-05 37.4 11.9 66 71-136 157-222 (302)
5 PRK08476 F0F1 ATP synthase sub 88.5 7.5 0.00016 28.1 15.3 98 48-145 29-134 (141)
6 PF10168 Nup88: Nuclear pore c 86.7 26 0.00057 32.3 16.8 97 60-157 561-667 (717)
7 PRK09173 F0F1 ATP synthase sub 83.5 15 0.00032 26.8 15.6 96 49-144 25-128 (159)
8 PRK11820 hypothetical protein; 82.6 25 0.00054 28.7 15.4 114 51-164 124-238 (288)
9 PF08702 Fib_alpha: Fibrinogen 80.5 20 0.00043 26.2 17.1 116 49-164 21-139 (146)
10 CHL00019 atpF ATP synthase CF0 77.8 27 0.00059 26.2 15.8 98 48-145 46-151 (184)
11 PRK14475 F0F1 ATP synthase sub 75.3 31 0.00066 25.5 15.7 119 13-142 8-134 (167)
12 PRK07352 F0F1 ATP synthase sub 74.7 32 0.0007 25.5 15.7 96 49-144 42-145 (174)
13 KOG2177|consensus 74.3 38 0.00083 26.2 9.2 28 40-67 114-141 (386)
14 PRK14474 F0F1 ATP synthase sub 72.8 46 0.001 26.4 15.7 96 48-143 27-130 (250)
15 PRK06569 F0F1 ATP synthase sub 72.1 37 0.00081 25.1 16.7 99 48-149 32-134 (155)
16 PF06705 SF-assemblin: SF-asse 71.8 47 0.001 26.1 17.1 44 114-157 146-189 (247)
17 PF07889 DUF1664: Protein of u 70.9 35 0.00076 24.3 9.6 43 52-94 56-98 (126)
18 PRK06568 F0F1 ATP synthase sub 70.8 40 0.00086 24.9 15.8 121 13-146 4-132 (154)
19 PF15290 Syntaphilin: Golgi-lo 70.8 56 0.0012 26.6 13.8 69 54-122 69-143 (305)
20 TIGR00255 conserved hypothetic 70.1 59 0.0013 26.6 14.4 112 53-164 128-241 (291)
21 COG1579 Zn-ribbon protein, pos 69.3 56 0.0012 26.0 15.2 60 46-105 24-86 (239)
22 TIGR01837 PHA_granule_1 poly(h 69.0 37 0.0008 23.8 12.2 58 92-149 59-116 (118)
23 PF10168 Nup88: Nuclear pore c 68.3 1E+02 0.0022 28.6 14.4 84 66-150 581-667 (717)
24 KOG4367|consensus 68.1 55 0.0012 28.5 8.9 41 26-77 270-310 (699)
25 PRK06231 F0F1 ATP synthase sub 66.7 57 0.0012 25.1 16.9 97 48-144 70-174 (205)
26 CHL00118 atpG ATP synthase CF0 66.7 47 0.001 24.2 16.9 57 48-104 44-100 (156)
27 PF10267 Tmemb_cc2: Predicted 65.8 86 0.0019 26.8 12.9 37 113-149 282-318 (395)
28 PF06705 SF-assemblin: SF-asse 64.4 68 0.0015 25.2 16.3 64 83-146 97-160 (247)
29 PF09755 DUF2046: Uncharacteri 63.2 86 0.0019 25.9 16.6 78 74-151 51-128 (310)
30 PRK14471 F0F1 ATP synthase sub 62.6 58 0.0013 23.8 15.7 95 48-142 30-132 (164)
31 PF00643 zf-B_box: B-box zinc 62.3 2.5 5.5E-05 23.5 -0.0 14 36-51 29-42 (42)
32 PF10146 zf-C4H2: Zinc finger- 62.0 77 0.0017 25.0 13.8 20 104-123 36-55 (230)
33 PF13094 CENP-Q: CENP-Q, a CEN 61.9 60 0.0013 23.7 11.3 93 66-158 43-155 (160)
34 PF00430 ATP-synt_B: ATP synth 58.2 59 0.0013 22.4 10.6 49 48-96 21-69 (132)
35 PF14723 SSFA2_C: Sperm-specif 57.8 80 0.0017 23.8 13.0 42 11-52 42-89 (179)
36 PRK07353 F0F1 ATP synthase sub 57.6 65 0.0014 22.7 16.9 56 48-103 27-82 (140)
37 PF10498 IFT57: Intra-flagella 56.0 1.2E+02 0.0027 25.5 15.6 83 72-159 235-317 (359)
38 PF05597 Phasin: Poly(hydroxya 56.0 73 0.0016 22.8 12.6 62 88-149 68-129 (132)
39 PRK13455 F0F1 ATP synthase sub 55.2 86 0.0019 23.4 15.7 94 50-143 51-152 (184)
40 PF00804 Syntaxin: Syntaxin; 54.4 57 0.0012 21.1 8.9 67 15-85 3-70 (103)
41 PF15397 DUF4618: Domain of un 52.9 1.2E+02 0.0026 24.4 13.8 54 104-157 49-102 (258)
42 PRK13460 F0F1 ATP synthase sub 51.9 95 0.0021 22.9 16.9 98 48-145 38-143 (173)
43 KOG2129|consensus 51.7 1.6E+02 0.0035 25.5 9.5 11 27-37 131-141 (552)
44 PF15079 DUF4546: Domain of un 51.4 69 0.0015 24.1 6.0 15 100-114 76-90 (205)
45 cd00021 BBOX B-Box-type zinc f 50.9 6 0.00013 21.3 0.3 16 34-51 24-39 (39)
46 COG1579 Zn-ribbon protein, pos 50.2 1.3E+02 0.0028 23.9 16.0 17 63-79 65-81 (239)
47 PHA03188 UL14 tegument protein 50.2 1.1E+02 0.0025 23.3 9.3 49 45-93 48-98 (199)
48 PRK13453 F0F1 ATP synthase sub 50.0 1E+02 0.0022 22.8 16.9 97 48-144 40-144 (173)
49 KOG4848|consensus 48.9 1.2E+02 0.0027 23.3 10.0 22 113-134 188-209 (225)
50 PRK05759 F0F1 ATP synthase sub 48.8 98 0.0021 22.2 16.9 95 48-142 26-128 (156)
51 PF10158 LOH1CR12: Tumour supp 48.1 1E+02 0.0022 22.1 13.3 62 100-163 60-121 (131)
52 PRK09174 F0F1 ATP synthase sub 47.4 1.3E+02 0.0028 23.1 15.7 50 48-97 75-124 (204)
53 PRK14472 F0F1 ATP synthase sub 47.3 1.1E+02 0.0025 22.5 16.9 95 48-142 40-142 (175)
54 PF12128 DUF3584: Protein of u 47.1 2.9E+02 0.0063 27.2 17.1 19 62-80 612-630 (1201)
55 PF11559 ADIP: Afadin- and alp 47.0 1.1E+02 0.0023 22.1 15.1 44 48-91 43-86 (151)
56 PF12761 End3: Actin cytoskele 46.7 1.3E+02 0.0029 23.1 8.0 70 42-120 82-152 (195)
57 PRK14473 F0F1 ATP synthase sub 46.3 1.1E+02 0.0025 22.2 16.9 97 48-144 30-134 (164)
58 COG1196 Smc Chromosome segrega 44.1 3.2E+02 0.0069 26.8 15.9 33 63-95 178-210 (1163)
59 PF12925 APP_E2: E2 domain of 43.3 1.5E+02 0.0033 22.8 11.5 60 72-131 42-105 (193)
60 PF12548 DUF3740: Sulfatase pr 41.4 1E+02 0.0022 22.5 5.6 35 51-85 100-134 (145)
61 PRK13428 F0F1 ATP synthase sub 41.1 2.4E+02 0.0052 24.4 16.9 95 48-142 23-125 (445)
62 PRK13461 F0F1 ATP synthase sub 40.8 1.4E+02 0.003 21.6 16.9 95 48-142 27-129 (159)
63 KOG0993|consensus 40.5 2.5E+02 0.0053 24.4 10.5 46 60-105 81-127 (542)
64 PRK00409 recombination and DNA 40.2 3.2E+02 0.0069 25.6 14.9 35 100-134 559-593 (782)
65 smart00336 BBOX B-Box-type zin 40.0 11 0.00025 20.5 0.3 16 34-51 27-42 (42)
66 PRK08475 F0F1 ATP synthase sub 39.4 1.5E+02 0.0034 21.8 16.6 59 48-106 44-102 (167)
67 KOG0804|consensus 39.1 2.7E+02 0.0058 24.4 14.0 75 79-154 376-453 (493)
68 PRK13454 F0F1 ATP synthase sub 38.2 1.7E+02 0.0037 21.9 16.8 53 48-100 53-105 (181)
69 TIGR03321 alt_F1F0_F0_B altern 37.4 2E+02 0.0044 22.5 16.9 52 48-99 27-78 (246)
70 PHA03187 UL14 tegument protein 37.4 2.3E+02 0.005 23.2 9.5 36 45-80 44-81 (322)
71 KOG0250|consensus 36.6 4.2E+02 0.009 25.9 15.6 26 45-70 287-312 (1074)
72 PF04728 LPP: Lipoprotein leuc 36.3 1E+02 0.0022 18.8 7.2 44 60-103 6-49 (56)
73 PF00170 bZIP_1: bZIP transcri 36.1 1E+02 0.0022 18.7 8.1 43 53-95 15-57 (64)
74 PF04799 Fzo_mitofusin: fzo-li 35.9 1.9E+02 0.0041 21.8 9.3 66 83-148 88-156 (171)
75 smart00806 AIP3 Actin interact 34.8 3.1E+02 0.0066 23.8 11.9 33 46-78 162-194 (426)
76 KOG0161|consensus 34.1 5.8E+02 0.013 26.8 16.8 16 133-148 1010-1025(1930)
77 TIGR01144 ATP_synt_b ATP synth 33.8 1.7E+02 0.0037 20.7 16.9 52 48-99 17-68 (147)
78 PHA03185 UL14 tegument protein 33.8 2.2E+02 0.0049 22.0 10.1 21 46-66 45-65 (214)
79 PF08112 ATP-synt_E_2: ATP syn 33.8 1.1E+02 0.0024 18.4 7.5 42 99-140 7-48 (56)
80 PF14712 Snapin_Pallidin: Snap 33.3 1.4E+02 0.003 19.4 12.0 29 127-155 62-90 (92)
81 PF10267 Tmemb_cc2: Predicted 33.0 3.2E+02 0.0069 23.5 15.5 40 117-156 279-318 (395)
82 PF05667 DUF812: Protein of un 32.1 3.9E+02 0.0084 24.3 11.9 30 50-79 423-452 (594)
83 KOG0837|consensus 31.8 2.8E+02 0.006 22.5 7.1 25 100-124 245-269 (279)
84 smart00338 BRLZ basic region l 31.5 1.2E+02 0.0027 18.3 7.8 43 52-94 14-56 (65)
85 PRK11637 AmiB activator; Provi 31.4 3.3E+02 0.0071 23.2 15.9 10 12-21 19-28 (428)
86 PF04156 IncA: IncA protein; 31.4 2.2E+02 0.0047 21.1 15.9 27 133-159 162-188 (191)
87 PRK09039 hypothetical protein; 30.3 3.2E+02 0.007 22.7 16.2 9 12-20 14-22 (343)
88 smart00787 Spc7 Spc7 kinetocho 30.2 3.1E+02 0.0068 22.6 17.5 25 135-159 238-262 (312)
89 KOG4001|consensus 29.9 2.7E+02 0.0059 21.7 10.2 25 13-39 123-147 (259)
90 PRK10361 DNA recombination pro 29.7 3.9E+02 0.0085 23.5 16.9 28 93-120 103-131 (475)
91 KOG4302|consensus 29.7 4.5E+02 0.0098 24.2 12.4 57 26-82 73-132 (660)
92 PF05667 DUF812: Protein of un 29.3 4.4E+02 0.0095 23.9 14.8 24 48-71 410-433 (594)
93 smart00502 BBC B-Box C-termina 29.1 1.8E+02 0.0039 19.4 16.3 36 92-127 46-81 (127)
94 PF07851 TMPIT: TMPIT-like pro 28.5 3.5E+02 0.0076 22.6 10.9 19 141-159 73-91 (330)
95 PF14817 HAUS5: HAUS augmin-li 28.0 4.7E+02 0.01 23.9 14.7 94 51-153 73-166 (632)
96 PF15450 DUF4631: Domain of un 27.9 4.4E+02 0.0095 23.5 15.0 25 130-154 413-437 (531)
97 PF12126 DUF3583: Protein of u 27.6 3.5E+02 0.0076 22.3 12.1 34 92-125 42-75 (324)
98 PF00435 Spectrin: Spectrin re 26.9 1.7E+02 0.0036 18.4 11.6 22 98-119 82-103 (105)
99 PF13863 DUF4200: Domain of un 26.4 2.2E+02 0.0047 19.5 15.6 26 98-123 41-66 (126)
100 PF05739 SNARE: SNARE domain; 26.0 1.5E+02 0.0032 17.5 9.5 53 61-113 8-60 (63)
101 COG2433 Uncharacterized conser 25.8 5.2E+02 0.011 23.7 15.8 31 64-94 429-459 (652)
102 KOG3850|consensus 25.7 4.3E+02 0.0094 22.7 12.9 81 73-154 262-342 (455)
103 COG1561 Uncharacterized stress 25.5 3.8E+02 0.0082 22.0 15.2 104 60-163 135-239 (290)
104 TIGR02231 conserved hypothetic 25.4 4.6E+02 0.01 23.0 12.3 31 61-91 75-105 (525)
105 KOG3863|consensus 25.2 3.8E+02 0.0083 24.4 7.4 60 54-113 501-560 (604)
106 KOG0774|consensus 25.1 3.8E+02 0.0082 21.8 11.2 79 56-134 103-181 (334)
107 KOG3584|consensus 25.1 1.8E+02 0.004 23.9 4.9 35 53-87 287-321 (348)
108 PF02994 Transposase_22: L1 tr 24.5 3.2E+02 0.0069 23.0 6.6 16 42-57 51-66 (370)
109 COG0711 AtpF F0F1-type ATP syn 24.1 2.9E+02 0.0063 20.2 16.9 116 16-144 9-132 (161)
110 PF10829 DUF2554: Protein of u 23.9 39 0.00085 21.6 0.8 18 42-59 23-40 (76)
111 PF09744 Jnk-SapK_ap_N: JNK_SA 23.8 3E+02 0.0066 20.3 9.7 8 112-119 122-129 (158)
112 PRK09973 putative outer membra 23.8 2.3E+02 0.0049 18.8 6.8 44 60-103 27-70 (85)
113 COG1322 Predicted nuclease of 23.5 5E+02 0.011 22.7 16.7 14 147-160 175-188 (448)
114 KOG4302|consensus 23.3 6E+02 0.013 23.5 10.0 30 133-162 237-266 (660)
115 KOG2391|consensus 23.0 4.6E+02 0.01 22.1 11.4 29 62-90 230-258 (365)
116 KOG0963|consensus 22.6 6E+02 0.013 23.2 15.3 60 98-157 151-210 (629)
117 KOG2271|consensus 21.7 3.8E+02 0.0083 24.7 6.7 109 9-122 198-309 (678)
118 KOG0971|consensus 21.7 7.5E+02 0.016 24.1 14.3 112 48-160 216-349 (1243)
119 TIGR01069 mutS2 MutS2 family p 21.1 6.9E+02 0.015 23.4 15.3 14 112-125 555-568 (771)
120 PRK04778 septation ring format 20.9 6E+02 0.013 22.7 18.6 99 14-114 217-321 (569)
121 KOG3096|consensus 20.7 4.1E+02 0.009 20.7 9.3 57 52-108 126-182 (225)
122 PF07195 FliD_C: Flagellar hoo 20.6 4.1E+02 0.0089 20.6 6.9 23 88-110 210-232 (239)
123 PF08317 Spc7: Spc7 kinetochor 20.5 4.8E+02 0.01 21.4 16.1 111 51-161 150-262 (325)
124 KOG3958|consensus 20.4 5.1E+02 0.011 21.6 18.0 52 11-62 179-237 (371)
125 KOG4643|consensus 20.1 8.4E+02 0.018 24.0 14.9 48 108-155 538-587 (1195)
No 1
>KOG4367|consensus
Probab=99.50 E-value=3e-13 Score=112.20 Aligned_cols=137 Identities=39% Similarity=0.687 Sum_probs=131.6
Q ss_pred HhcccccccCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q psy11969 33 NLQLLSEKARSTTEFIKRLKSIADLLNTDLSQNLQLLSEKARSTTEFIKRLKSIADLLNDNSIEFESQIVAQCDALIKAI 112 (170)
Q Consensus 33 ~~~~~~~~~~Hk~H~v~~leeA~~~~K~~L~~~l~~L~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~I~~~f~~L~~~L 112 (170)
-.||+.++ .|.+|+|.++.-+|+.+|.+|...++.|.++.++..+++..+....+.+++++...+..+..+++.|+..|
T Consensus 246 c~~clee~-khs~hevkal~~~~k~hksqls~al~~lsdrak~a~e~l~~lr~m~~~iq~n~~ef~a~l~~q~d~lid~l 324 (699)
T KOG4367|consen 246 CYQCLEEG-KHSSHEVKALGAMWKLHKSQLSQALNGLSDRAKEAKEFLVQLRNMVQQIQENSVEFEACLVAQCDALIDAL 324 (699)
T ss_pred HHHHHHhh-cccchhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHH
Confidence 35788775 99999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCccccccC
Q psy11969 113 EDRKKQLVDAIRLEKESKQRILREQVSGCACKLQRTTALLQFCIEALKETDAAAFLQF 170 (170)
Q Consensus 113 ~e~e~~ll~~Le~e~~~~l~~l~~~~~~l~~~l~~l~~~i~~l~e~l~~~~~~~fLq~ 170 (170)
+.++..++..+.++...+++.++.++.++..++.....++.++-+.++++|+..|+|+
T Consensus 325 ~~rk~qll~~v~~e~e~k~kv~r~qi~~ct~kl~qtt~lme~cle~ike~dps~~lqi 382 (699)
T KOG4367|consen 325 NRRKAQLLARVNKEHEHKLKVVRDQISHCTVKLRQTTGLMEYCLEVIKENDPSGFLQI 382 (699)
T ss_pred HHHHHHHHHHhhhhhhhHHHHHHHHhhheeeeeeehhhHHHHHHHHhccCCCcceeeh
Confidence 9999999999999999999999999999999999999999999999999999999873
No 2
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=99.44 E-value=1.5e-11 Score=86.99 Aligned_cols=111 Identities=31% Similarity=0.429 Sum_probs=107.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11969 59 NTDLSQNLQLLSEKARSTTEFIKRLKSIADLLNDNSIEFESQIVAQCDALIKAIEDRKKQLVDAIRLEKESKQRILREQV 138 (170)
Q Consensus 59 K~~L~~~l~~L~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~I~~~f~~L~~~L~e~e~~ll~~Le~e~~~~l~~l~~~~ 138 (170)
|+.|...+..+..+...+...+..+......+..++...+..|...|+.|+.+|++++..++..|+.+...+...+..+.
T Consensus 2 k~~L~~~l~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~I~~~f~~l~~~L~~~e~~ll~~l~~~~~~~~~~l~~q~ 81 (127)
T smart00502 2 REALEELLTKLRKKAAELEDALKQLISIIQEVEENAADVEAQIKAAFDELRNALNKRKKQLLEDLEEQKENKLKVLEQQL 81 (127)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccCcccccc
Q psy11969 139 SGCACKLQRTTALLQFCIEALKETDAAAFLQ 169 (170)
Q Consensus 139 ~~l~~~l~~l~~~i~~l~e~l~~~~~~~fLq 169 (170)
..++..+..+..++.+++..+..+++..||+
T Consensus 82 ~~l~~~l~~l~~~~~~~e~~l~~~~~~e~L~ 112 (127)
T smart00502 82 ESLTQKQEKLSHAINFTEEALNSGDPTELLL 112 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCChHHHH
Confidence 9999999999999999999999888888875
No 3
>PF12126 DUF3583: Protein of unknown function (DUF3583); InterPro: IPR021978 This domain is found in eukaryotes, and is typically between 302 and 338 amino acids in length. It is found in association with PF00097 from PFAM and PF00643 from PFAM. Most members are promyelocytic leukemia proteins, and this family lies towards the C terminus.
Probab=95.94 E-value=0.49 Score=38.34 Aligned_cols=82 Identities=13% Similarity=0.159 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11969 79 FIKRLKSIADLLNDNSIEFESQIVAQCDALIKAIEDRKKQLVDAIRLEKESKQRILREQVSGCACKLQRTTALLQFCIEA 158 (170)
Q Consensus 79 ~~~~l~~~~~~~~~~~~~~~~~I~~~f~~L~~~L~e~e~~ll~~Le~e~~~~l~~l~~~~~~l~~~l~~l~~~i~~l~e~ 158 (170)
.-..+.....++.......+..|.+....+...++.+++.||+.++...+...+.+..++.++..-+.++...-..++.+
T Consensus 18 ahaqm~sav~qL~~~r~~teelIr~rVrq~V~hVqaqEreLLe~v~~rYqR~y~ema~~L~~LeavLqRir~G~~LVekM 97 (324)
T PF12126_consen 18 AHAQMRSAVSQLGRARADTEELIRARVRQVVAHVQAQERELLEAVEARYQRDYEEMAGQLGRLEAVLQRIRTGGALVEKM 97 (324)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHH
Confidence 33344444555555556677788888899999999999999999999999999999999999999998887777666654
Q ss_pred hc
Q psy11969 159 LK 160 (170)
Q Consensus 159 l~ 160 (170)
..
T Consensus 98 ~~ 99 (324)
T PF12126_consen 98 KL 99 (324)
T ss_pred HH
Confidence 43
No 4
>PF07139 DUF1387: Protein of unknown function (DUF1387); InterPro: IPR009816 This family represents a conserved region approximately 300 residues long within a number of hypothetical proteins of unknown function that seem to be restricted to mammals.
Probab=95.01 E-value=0.78 Score=37.44 Aligned_cols=66 Identities=15% Similarity=0.146 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11969 71 EKARSTTEFIKRLKSIADLLNDNSIEFESQIVAQCDALIKAIEDRKKQLVDAIRLEKESKQRILRE 136 (170)
Q Consensus 71 ~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~I~~~f~~L~~~L~e~e~~ll~~Le~e~~~~l~~l~~ 136 (170)
.-.++++.....+..=.-.+++.+...-..|...|..|+.+|.+++-.|+..++.-..+....|..
T Consensus 157 KSvKDLqRctvSL~RYr~~lkee~d~S~k~ik~~F~~l~~cL~dREvaLl~EmdkVK~EAmeiL~a 222 (302)
T PF07139_consen 157 KSVKDLQRCTVSLTRYRVVLKEEMDSSIKKIKQTFAELQSCLMDREVALLAEMDKVKAEAMEILDA 222 (302)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555455777888888999999999999999999999999988776666555533
No 5
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=88.50 E-value=7.5 Score=28.05 Aligned_cols=98 Identities=14% Similarity=0.214 Sum_probs=61.5
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH--------HHHHHHHHHHHHH
Q psy11969 48 IKRLKSIADLLNTDLSQNLQLLSEKARSTTEFIKRLKSIADLLNDNSIEFESQIVAQCD--------ALIKAIEDRKKQL 119 (170)
Q Consensus 48 v~~leeA~~~~K~~L~~~l~~L~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~I~~~f~--------~L~~~L~e~e~~l 119 (170)
+-|+....++.+..+...+........++..........+...+..+......+...-. .-..-++......
T Consensus 29 ~kPi~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~l~~Ar~eA~~~~~~a~~~A~~ea~~~~~~A~~~~~~~~~~a 108 (141)
T PRK08476 29 YKPLLKFMDNRNASIKNDLEKVKTNSSDVSEIEHEIETILKNAREEANKIRQKAIAKAKEEAEKKIEAKKAELESKYEAF 108 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56899999999999999999988888888887777777666666555544444433222 2233334444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11969 120 VDAIRLEKESKQRILREQVSGCACKL 145 (170)
Q Consensus 120 l~~Le~e~~~~l~~l~~~~~~l~~~l 145 (170)
...|+.+.......+..++..+..++
T Consensus 109 ~~~l~~e~~~~~~~l~~qv~~~~~~~ 134 (141)
T PRK08476 109 AKQLANQKQELKEQLLSQMPEFKEAL 134 (141)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 44555555555555555555554443
No 6
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=86.65 E-value=26 Score=32.29 Aligned_cols=97 Identities=9% Similarity=0.210 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHH
Q psy11969 60 TDLSQNLQLLSEKARSTTEFIKRLKSIADLLNDNSIEFESQIVAQCDALIKAIEDRKKQLVDAI----------RLEKES 129 (170)
Q Consensus 60 ~~L~~~l~~L~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~I~~~f~~L~~~L~e~e~~ll~~L----------e~e~~~ 129 (170)
.+++..+..++...+.....+..+.+....+..+++.+..++....+ -+..|.+|-..++..+ +.+...
T Consensus 561 ~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d-~Qe~L~~R~~~vl~~l~~~~P~LS~AEr~~~~ 639 (717)
T PF10168_consen 561 EEIQRRVKLLKQQKEQQLKELQELQEERKSLRESAEKLAERYEEAKD-KQEKLMKRVDRVLQLLNSQLPVLSEAEREFKK 639 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhccCCCCCHHHHHHHH
Confidence 34444444444444444444444555555555555555555444333 2445555555555443 344444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11969 130 KQRILREQVSGCACKLQRTTALLQFCIE 157 (170)
Q Consensus 130 ~l~~l~~~~~~l~~~l~~l~~~i~~l~e 157 (170)
.++.+...+..+...+..++..+...+.
T Consensus 640 EL~~~~~~l~~l~~si~~lk~k~~~Q~~ 667 (717)
T PF10168_consen 640 ELERMKDQLQDLKASIEQLKKKLDYQQR 667 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556666666666666666666655433
No 7
>PRK09173 F0F1 ATP synthase subunit B; Validated
Probab=83.54 E-value=15 Score=26.83 Aligned_cols=96 Identities=9% Similarity=0.084 Sum_probs=61.2
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH--------HHHHHHHH
Q psy11969 49 KRLKSIADLLNTDLSQNLQLLSEKARSTTEFIKRLKSIADLLNDNSIEFESQIVAQCDALIKAI--------EDRKKQLV 120 (170)
Q Consensus 49 ~~leeA~~~~K~~L~~~l~~L~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~I~~~f~~L~~~L--------~e~e~~ll 120 (170)
-||..+.++.+..+...+........+........+..+......+..........-..+..-. .......-
T Consensus 25 ~pi~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~~~e~~L~~A~~ea~~ii~~A~~~a~~~~~~a~~~a~~~~~~~~~~a~ 104 (159)
T PRK09173 25 GMIARSLDARADRIKNELAEARRLREEAQQLLAEYQRKRKEAEKEAADIVAAAEREAEALTAEAKRKTEEYVARRNKLAE 104 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5799999999999999999999888888888888777777666655554444443333332222 22222233
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy11969 121 DAIRLEKESKQRILREQVSGCACK 144 (170)
Q Consensus 121 ~~Le~e~~~~l~~l~~~~~~l~~~ 144 (170)
..|+.+.......+..++..+...
T Consensus 105 ~~I~~ek~~a~~el~~~~~~lA~~ 128 (159)
T PRK09173 105 QKIAQAETDAINAVRSSAVDLAIA 128 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666665555433
No 8
>PRK11820 hypothetical protein; Provisional
Probab=82.60 E-value=25 Score=28.68 Aligned_cols=114 Identities=18% Similarity=0.187 Sum_probs=77.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11969 51 LKSIADLLNTDLSQNLQLLSE-KARSTTEFIKRLKSIADLLNDNSIEFESQIVAQCDALIKAIEDRKKQLVDAIRLEKES 129 (170)
Q Consensus 51 leeA~~~~K~~L~~~l~~L~~-~~~e~~~~~~~l~~~~~~~~~~~~~~~~~I~~~f~~L~~~L~e~e~~ll~~Le~e~~~ 129 (170)
.++.+......+...+..+.. +..+-......+...+..+.......+............-|.++-+.++..++...=.
T Consensus 124 ~~~~~~~l~~al~~AL~~l~~~R~~EG~~L~~dl~~rl~~i~~~~~~i~~~~p~~~~~~~~rL~~rl~el~~~~d~~Rl~ 203 (288)
T PRK11820 124 LEALWAALLAALDEALDDLIEMREREGAALKADLLQRLDAIEALVAKIEALAPEILEEYRERLRERLEELLGELDENRLE 203 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHhhcCHHHHH
Confidence 445566677778888877766 4567777777788888888887777777776677777777777777766444443333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCc
Q psy11969 130 KQRILREQVSGCACKLQRTTALLQFCIEALKETDA 164 (170)
Q Consensus 130 ~l~~l~~~~~~l~~~l~~l~~~i~~l~e~l~~~~~ 164 (170)
..-.+-.......+++.++..-+....+.+..+.+
T Consensus 204 qEval~adK~DI~EEi~RL~sHl~~f~~~L~~~~~ 238 (288)
T PRK11820 204 QEVALLAQKADIAEELDRLKSHLKEFREILKKGGP 238 (288)
T ss_pred HHHHHHHHHcchHHHHHHHHHHHHHHHHHHhcCCC
Confidence 33334555666777777777777777777766554
No 9
>PF08702 Fib_alpha: Fibrinogen alpha/beta chain family; InterPro: IPR012290 Fibrinogen plays key roles in both blood clotting and platelet aggregation. During blood clot formation, the conversion of soluble fibrinogen to insoluble fibrin is triggered by thrombin, resulting in the polymerisation of fibrin, which forms a soft clot; this is then converted to a hard clot by factor XIIIA, which cross-links fibrin molecules. Platelet aggregation involves the binding of the platelet protein receptor integrin alpha(IIb)-beta(3) to the C-terminal D domain of fibrinogen []. In addition to platelet aggregation, platelet-fibrinogen interaction mediates both adhesion and fibrin clot retraction. Fibrinogen occurs as a dimer, where each monomer is composed of three non-identical chains, alpha, beta and gamma, linked together by several disulphide bonds []. The N-terminals of all six chains come together to form the centre of the molecule (E domain), from which the monomers extend in opposite directions as coiled coils, followed by C-terminal globular domains (D domains). Therefore, the domain composition is: D-coil-E-coil-D. At each end, the C-terminal of the alpha chain extends beyond the D domain as a protuberance that is important for cross-linking the molecule. During clot formation, the N-terminal fragments of the alpha and beta chains (within the E domain) in fibrinogen are cleaved by thrombin, releasing fibrinopeptides A and B, respectively, and producing fibrin. This cleavage results in the exposure of four binding sites on the E domain, each of which can bind to a D domain from different fibrin molecules. The binding of fibrin molecules produces a polymer consisting of a lattice network of fibrins that form a long, branching, flexible fibre [, ]. Fibrin fibres interact with platelets to increase the size of the clot, as well as with several different proteins and cells, thereby promoting the inflammatory response and concentrating the cells required for wound repair at the site of damage. This entry represents the coiled-coil domain and part of the N-terminal E domain found in all three fibrinogen polypeptides, namely the alpha, beta and gamma chains. More information about these proteins can be found at Protein of the Month: Fibrinogen [].; GO: 0005102 receptor binding, 0030674 protein binding, bridging, 0007165 signal transduction, 0030168 platelet activation, 0051258 protein polymerization, 0005577 fibrinogen complex; PDB: 1LWU_D 1N73_D 1M1J_B 1JY2_R 1JY3_R 1RF0_A 2H43_D 1RE4_D 2XNY_D 2HPC_D ....
Probab=80.52 E-value=20 Score=26.18 Aligned_cols=116 Identities=13% Similarity=0.100 Sum_probs=72.1
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Q psy11969 49 KRLKSIADLLNTDLSQNLQLLSEKARSTTEFIKRLKSIADLLNDNSIEFESQIV---AQCDALIKAIEDRKKQLVDAIRL 125 (170)
Q Consensus 49 ~~leeA~~~~K~~L~~~l~~L~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~I~---~~f~~L~~~L~e~e~~ll~~Le~ 125 (170)
.-|.+...++.......++.|+....++.+.-+....-+..+.+.......... ..+...-.-|+++-...++.+..
T Consensus 21 C~i~~~L~k~~~~v~~~i~~L~~~L~~~~n~t~~~~~~v~~i~~~~~~~q~~~~~n~~i~~~~s~~l~~~~~~~~e~~i~ 100 (146)
T PF08702_consen 21 CGIQDFLDKYERDVDKDIQELENLLDQISNSTSEAFEYVKNIKDSLRPRQKQAKPNDNIYNQYSKSLRKMIIYILETKII 100 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred chHHHHHHHHccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccccccCCcccHHHHHHHHHHHHHHHHHHHHHh
Confidence 346667777777777888888777777776655544444444433222221111 12222222222222334455556
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCc
Q psy11969 126 EKESKQRILREQVSGCACKLQRTTALLQFCIEALKETDA 164 (170)
Q Consensus 126 e~~~~l~~l~~~~~~l~~~l~~l~~~i~~l~e~l~~~~~ 164 (170)
........|+..+......+..|+..+....+.++++..
T Consensus 101 ~~~~~I~~Lq~~~~~~~~ki~~Le~~i~~~~~~Ck~pC~ 139 (146)
T PF08702_consen 101 NQPSNIRVLQNILRSNRQKIQRLEQDIDQQERYCKEPCK 139 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSTBE
T ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccc
Confidence 666678888999999999999999999999888877653
No 10
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=77.77 E-value=27 Score=26.19 Aligned_cols=98 Identities=13% Similarity=0.110 Sum_probs=62.5
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH--------HHHHHHHH
Q psy11969 48 IKRLKSIADLLNTDLSQNLQLLSEKARSTTEFIKRLKSIADLLNDNSIEFESQIVAQCDALIKA--------IEDRKKQL 119 (170)
Q Consensus 48 v~~leeA~~~~K~~L~~~l~~L~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~I~~~f~~L~~~--------L~e~e~~l 119 (170)
.-||..+.++.+..+...+........+........+..+......+...........+....- ........
T Consensus 46 ~kPI~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~L~~A~~ea~~ii~~A~~~ae~~~~~il~~A~~ea~~~~~~a 125 (184)
T CHL00019 46 KGVLSDLLDNRKQTILNTIRNSEERREEAIEKLEKARARLRQAELEADEIRVNGYSEIEREKENLINQAKEDLERLENYK 125 (184)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4689999999999999999999988888888888877777666665555544444444333222 22222333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11969 120 VDAIRLEKESKQRILREQVSGCACKL 145 (170)
Q Consensus 120 l~~Le~e~~~~l~~l~~~~~~l~~~l 145 (170)
...++.+.......+...+..+.-..
T Consensus 126 ~~~ie~Ek~~a~~~l~~ei~~lav~~ 151 (184)
T CHL00019 126 NETIRFEQQRAINQVRQQVFQLALQR 151 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455666666666666555544333
No 11
>PRK14475 F0F1 ATP synthase subunit B; Provisional
Probab=75.25 E-value=31 Score=25.51 Aligned_cols=119 Identities=11% Similarity=0.103 Sum_probs=73.4
Q ss_pred CCchHHHHHHHHHHHHHHHHHhcccccccCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy11969 13 PRPSAYKAALVFKLLTDLSQNLQLLSEKARSTTEFIKRLKSIADLLNTDLSQNLQLLSEKARSTTEFIKRLKSIADLLND 92 (170)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Hk~H~v~~leeA~~~~K~~L~~~l~~L~~~~~e~~~~~~~l~~~~~~~~~ 92 (170)
+.|.||..-.|+.+..=|--. . =-.-||....++.+..+...++.......+........+..+.....
T Consensus 8 ~~~~~w~~i~f~il~~iL~~~-----k------~l~~pi~~~le~R~~~I~~~l~~Ae~~k~eAe~~~~~~e~~L~~A~~ 76 (167)
T PRK14475 8 SNPEFWVGAGLLIFFGILIAL-----K------VLPKALAGALDAYAAKIQAELDEAQRLREEAQALLADVKAEREEAER 76 (167)
T ss_pred CchHHHHHHHHHHHHHHHHHH-----H------HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467788777776665433200 0 01368999999999999999999999999998888888777777766
Q ss_pred hHHHHHHHHHHHHHH----HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Q psy11969 93 NSIEFESQIVAQCDA----LIKAIEDRKKQLV----DAIRLEKESKQRILREQVSGCA 142 (170)
Q Consensus 93 ~~~~~~~~I~~~f~~----L~~~L~e~e~~ll----~~Le~e~~~~l~~l~~~~~~l~ 142 (170)
.+..........-.. ...-.+.+-..++ ..|+.+.......+...+..+.
T Consensus 77 ea~~Ii~~A~~~a~~~~~~~~~~A~~ea~~~~~~A~~~I~~e~~~a~~el~~e~~~lA 134 (167)
T PRK14475 77 QAAAMLAAAKADARRMEAEAKEKLEEQIKRRAEMAERKIAQAEAQAAADVKAAAVDLA 134 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 655444444333332 2222222222222 3455555556655655555544
No 12
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=74.65 E-value=32 Score=25.51 Aligned_cols=96 Identities=15% Similarity=0.142 Sum_probs=59.7
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH--------HHHHHHHHHH
Q psy11969 49 KRLKSIADLLNTDLSQNLQLLSEKARSTTEFIKRLKSIADLLNDNSIEFESQIVAQCDALIK--------AIEDRKKQLV 120 (170)
Q Consensus 49 ~~leeA~~~~K~~L~~~l~~L~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~I~~~f~~L~~--------~L~e~e~~ll 120 (170)
-||..+.++.+..+...+........+........+..+......+..........-+.... -+........
T Consensus 42 kpI~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~~~~~~L~~a~~ea~~ii~~a~~~a~~~~~~~~~~A~~e~~~~~~~a~ 121 (174)
T PRK07352 42 GFLGKILEERREAILQALKEAEERLRQAAQALAEAQQKLAQAQQEAERIRADAKARAEAIRAEIEKQAIEDMARLKQTAA 121 (174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46899999999999999999999888888888887776666665554444444333333222 2222333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy11969 121 DAIRLEKESKQRILREQVSGCACK 144 (170)
Q Consensus 121 ~~Le~e~~~~l~~l~~~~~~l~~~ 144 (170)
..|+.+.+.....+..++..+-..
T Consensus 122 ~~i~~e~~~a~~~l~~qi~~la~~ 145 (174)
T PRK07352 122 ADLSAEQERVIAQLRREAAELAIA 145 (174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555544433
No 13
>KOG2177|consensus
Probab=74.26 E-value=38 Score=26.17 Aligned_cols=28 Identities=14% Similarity=0.125 Sum_probs=21.6
Q ss_pred ccCcccccccchHHHHHHHHHHHHHHHH
Q psy11969 40 KARSTTEFIKRLKSIADLLNTDLSQNLQ 67 (170)
Q Consensus 40 ~~~Hk~H~v~~leeA~~~~K~~L~~~l~ 67 (170)
+..|.+|.+.|+++++..++..+...+.
T Consensus 114 ~~~h~~h~~~~~~~~~~~~~~~~~~~~~ 141 (386)
T KOG2177|consen 114 SGEHRGHPVLPLEEAAQEYREKLLAELE 141 (386)
T ss_pred cccccCCccccHHHHHHHHHHHHHHHHH
Confidence 4589999999999999999844433333
No 14
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=72.79 E-value=46 Score=26.44 Aligned_cols=96 Identities=11% Similarity=0.169 Sum_probs=55.2
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH--------HHHHHHHHHHH
Q psy11969 48 IKRLKSIADLLNTDLSQNLQLLSEKARSTTEFIKRLKSIADLLNDNSIEFESQIVAQCDAL--------IKAIEDRKKQL 119 (170)
Q Consensus 48 v~~leeA~~~~K~~L~~~l~~L~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~I~~~f~~L--------~~~L~e~e~~l 119 (170)
.-||..+.++.+..+...+........+.+......+.........+..........-... +.-........
T Consensus 27 ~kPi~~~l~eR~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~ii~~A~~eA~~~~~~il~~A~~ea~~~~~~a 106 (250)
T PRK14474 27 YKPIIQVMKKRQQRIANRWQDAEQRQQEAGQEAERYRQKQQSLEQQRASFMAQAQEAADEQRQHLLNEAREDVATARDEW 106 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4588889999999999999988888777777766666655555544433333322222222 22222233333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy11969 120 VDAIRLEKESKQRILREQVSGCAC 143 (170)
Q Consensus 120 l~~Le~e~~~~l~~l~~~~~~l~~ 143 (170)
...++.+.......+..++..+.-
T Consensus 107 ~~~ie~Ek~~a~~~L~~~v~~la~ 130 (250)
T PRK14474 107 LEQLEREKQEFFKALQQQTGQQMV 130 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555544443
No 15
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=72.05 E-value=37 Score=25.09 Aligned_cols=99 Identities=10% Similarity=0.065 Sum_probs=58.5
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11969 48 IKRLKSIADLLNTDLSQNLQLLSEKARSTTEFIKRLKSIADLLNDNSIEF----ESQIVAQCDALIKAIEDRKKQLVDAI 123 (170)
Q Consensus 48 v~~leeA~~~~K~~L~~~l~~L~~~~~e~~~~~~~l~~~~~~~~~~~~~~----~~~I~~~f~~L~~~L~e~e~~ll~~L 123 (170)
+-||....+..+..+...++.......+........+..+......+... +..+.+++..=...+ +..+...|
T Consensus 32 ~ppI~~iLe~R~~~I~~~L~~Ae~~k~eAe~l~a~ye~~L~~Ar~eA~~I~~e~~~~~~a~~~~~~~~~---ea~L~~~~ 108 (155)
T PRK06569 32 TPKAEEIFNNRQTNIQDNITQADTLTIEVEKLNKYYNEEIDKTNTEIDRLKKEKIDSLESEFLIKKKNL---EQDLKNSI 108 (155)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH
Confidence 56888899999999999999988888888887777777666666555443 333444443322222 23333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11969 124 RLEKESKQRILREQVSGCACKLQRTT 149 (170)
Q Consensus 124 e~e~~~~l~~l~~~~~~l~~~l~~l~ 149 (170)
..+-+...........++.+++-.+.
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~i~~~ 134 (155)
T PRK06569 109 NQNIEDINLAAKQFRTNKSEAIIKLA 134 (155)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 33333333333444444444444443
No 16
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=71.85 E-value=47 Score=26.14 Aligned_cols=44 Identities=14% Similarity=0.203 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11969 114 DRKKQLVDAIRLEKESKQRILREQVSGCACKLQRTTALLQFCIE 157 (170)
Q Consensus 114 e~e~~ll~~Le~e~~~~l~~l~~~~~~l~~~l~~l~~~i~~l~e 157 (170)
+++..++..|+.........+..-....+..+..+...+..+..
T Consensus 146 erE~~i~krl~e~~~~l~~~i~~Ek~~Re~~~~~l~~~le~~~~ 189 (247)
T PF06705_consen 146 EREENILKRLEEEENRLQEKIEKEKNTRESKLSELRSELEEVKR 189 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455555666666665555655555555555555555554443
No 17
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=70.92 E-value=35 Score=24.32 Aligned_cols=43 Identities=16% Similarity=0.219 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q psy11969 52 KSIADLLNTDLSQNLQLLSEKARSTTEFIKRLKSIADLLNDNS 94 (170)
Q Consensus 52 eeA~~~~K~~L~~~l~~L~~~~~e~~~~~~~l~~~~~~~~~~~ 94 (170)
.++...-|..|...++.+..+.++.........+....+....
T Consensus 56 s~~l~~tKkhLsqRId~vd~klDe~~ei~~~i~~eV~~v~~dv 98 (126)
T PF07889_consen 56 SESLSSTKKHLSQRIDRVDDKLDEQKEISKQIKDEVTEVREDV 98 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhH
Confidence 3344555666777777777666666665555555554444443
No 18
>PRK06568 F0F1 ATP synthase subunit B; Validated
Probab=70.83 E-value=40 Score=24.88 Aligned_cols=121 Identities=10% Similarity=0.087 Sum_probs=77.7
Q ss_pred CCchHHHHHHHHHHHHHHHHHhcccccccCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy11969 13 PRPSAYKAALVFKLLTDLSQNLQLLSEKARSTTEFIKRLKSIADLLNTDLSQNLQLLSEKARSTTEFIKRLKSIADLLND 92 (170)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Hk~H~v~~leeA~~~~K~~L~~~l~~L~~~~~e~~~~~~~l~~~~~~~~~ 92 (170)
+-|.||..--|+.|.-=|.-- -.-||..+.++....+...++.......+........+..+.....
T Consensus 4 ~~~~fwq~I~FlIll~ll~kf-------------awkPI~~~LeeR~~~I~~~Ld~Ae~~r~eA~~l~~e~e~~L~~Ar~ 70 (154)
T PRK06568 4 LDESFWLAVSFVIFVYLIYRP-------------AKKAILNSLDAKILEVQEKVLKAEKLKEDAALLFEQTNAQIKKLET 70 (154)
T ss_pred hHhHHHHHHHHHHHHHHHHHH-------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346677766666655433211 1568888999999999999998888888888877776665555554
Q ss_pred hHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11969 93 NSIEFESQI--------VAQCDALIKAIEDRKKQLVDAIRLEKESKQRILREQVSGCACKLQ 146 (170)
Q Consensus 93 ~~~~~~~~I--------~~~f~~L~~~L~e~e~~ll~~Le~e~~~~l~~l~~~~~~l~~~l~ 146 (170)
.+...-..- ...-...+...+.........|+.+....+..++..+..+.-.+.
T Consensus 71 EA~~Ii~~A~~~a~~~~~ea~~eA~~ea~r~~~~A~~~Ie~Ek~~Al~elr~eva~Lav~iA 132 (154)
T PRK06568 71 LRSQMIEESNEVTKKIIQEKTKEIEEFLEHKKSDAIQLIQNQKSTASKELQDEFCDEVIKLV 132 (154)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333322222 222233344445555555566888888888888888887765553
No 19
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=70.76 E-value=56 Score=26.61 Aligned_cols=69 Identities=13% Similarity=0.168 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11969 54 IADLLNTDLSQNLQLLSEKARSTTEFIKRLKSIADLL-NDNS-----IEFESQIVAQCDALIKAIEDRKKQLVDA 122 (170)
Q Consensus 54 A~~~~K~~L~~~l~~L~~~~~e~~~~~~~l~~~~~~~-~~~~-----~~~~~~I~~~f~~L~~~L~e~e~~ll~~ 122 (170)
+..-+|.+|+...+.|+.+..++.+.+..+..+..-| ++.+ +.+-+..+.+...|.++++..+..+.+.
T Consensus 69 ~iRHLkakLkes~~~l~dRetEI~eLksQL~RMrEDWIEEECHRVEAQLALKEARkEIkQLkQvieTmrssL~ek 143 (305)
T PF15290_consen 69 CIRHLKAKLKESENRLHDRETEIDELKSQLARMREDWIEEECHRVEAQLALKEARKEIKQLKQVIETMRSSLAEK 143 (305)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchh
Confidence 5667799999999999999888888888876544433 3333 4444455667788888888888888766
No 20
>TIGR00255 conserved hypothetical protein TIGR00255. The apparent ortholog from Aquifex aeolicus as reported is split into two consecutive reading frames.
Probab=70.08 E-value=59 Score=26.56 Aligned_cols=112 Identities=15% Similarity=0.153 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Q psy11969 53 SIADLLNTDLSQNLQLLSE-KARSTTEFIKRLKSIADLLNDNSIEFESQIVAQCDALIKAIEDRKKQLV-DAIRLEKESK 130 (170)
Q Consensus 53 eA~~~~K~~L~~~l~~L~~-~~~e~~~~~~~l~~~~~~~~~~~~~~~~~I~~~f~~L~~~L~e~e~~ll-~~Le~e~~~~ 130 (170)
+.+......+...+..+.. +..+-......+...+..+.......+............-|.++-+.++ ..++...=..
T Consensus 128 ~~~~~l~~al~~AL~~l~~mR~~EG~~L~~dl~~rl~~i~~~v~~i~~~~p~~~~~~~~rL~~rl~el~~~~id~~Rl~q 207 (291)
T TIGR00255 128 AIYALILGALEEALLDFINMREFEGENLKSDIVQRLDLIEREVKKVRSAMPDILQWQRERLKARIEDLAQEFLDLNRLEQ 207 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 3445556667777777665 4557777777777777787777777776666666666666666666665 2233322222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCc
Q psy11969 131 QRILREQVSGCACKLQRTTALLQFCIEALKETDA 164 (170)
Q Consensus 131 l~~l~~~~~~l~~~l~~l~~~i~~l~e~l~~~~~ 164 (170)
.-.+-.......+++.++..-+....+.+..+.+
T Consensus 208 Eval~adK~DI~EEl~RL~sHl~~f~~~L~~~~~ 241 (291)
T TIGR00255 208 EAALLAQRIDIAEEIDRLDSHVKEFYNILKKGEA 241 (291)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHHHHhcCCC
Confidence 2234445566667777777777777777765544
No 21
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=69.34 E-value=56 Score=25.97 Aligned_cols=60 Identities=15% Similarity=0.170 Sum_probs=37.2
Q ss_pred ccccchHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q psy11969 46 EFIKRLKSIADLLNTDLS---QNLQLLSEKARSTTEFIKRLKSIADLLNDNSIEFESQIVAQC 105 (170)
Q Consensus 46 H~v~~leeA~~~~K~~L~---~~l~~L~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~I~~~f 105 (170)
|...|..+++...+..+. ..+..++....++++.+..++..+..+..+....+..+.+.+
T Consensus 24 ~~~~~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~ 86 (239)
T COG1579 24 PRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAVK 86 (239)
T ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 555688877777665554 444555555566666666666667777766666666654433
No 22
>TIGR01837 PHA_granule_1 poly(hydroxyalkanoate) granule-associated protein. This model describes a domain found in some proteins associated with polyhydroxyalkanoate (PHA) granules in a subset of species that have PHA inclusion granules. Included are two tandem proteins of Pseudomonas oleovorans, PhaI and PhaF, and their homologs in related species. PhaF proteins have a low-complexity C-terminal region with repeats similar to AAAKP.
Probab=68.96 E-value=37 Score=23.76 Aligned_cols=58 Identities=16% Similarity=0.248 Sum_probs=44.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11969 92 DNSIEFESQIVAQCDALIKAIEDRKKQLVDAIRLEKESKQRILREQVSGCACKLQRTT 149 (170)
Q Consensus 92 ~~~~~~~~~I~~~f~~L~~~L~e~e~~ll~~Le~e~~~~l~~l~~~~~~l~~~l~~l~ 149 (170)
.............++.+-..++++-+.++..+.--.+..+..|...+..|+..+..+.
T Consensus 59 ~~~~~~~~~~~~~~~~le~~~~~~v~~~L~~lg~~tk~ev~~L~~RI~~Le~~l~~l~ 116 (118)
T TIGR01837 59 TALEQTRDQVQRNWDKLEKAFDERVEQALNRLNIPSREEIEALSAKIEQLAVQVEELR 116 (118)
T ss_pred hhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444455555667788888999999999999887777778888888888888877764
No 23
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=68.26 E-value=1e+02 Score=28.56 Aligned_cols=84 Identities=15% Similarity=0.179 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11969 66 LQLLSEKARSTTEFIKRLKSIADLLNDNSIEFESQIVAQCDALIK---AIEDRKKQLVDAIRLEKESKQRILREQVSGCA 142 (170)
Q Consensus 66 l~~L~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~I~~~f~~L~~---~L~e~e~~ll~~Le~e~~~~l~~l~~~~~~l~ 142 (170)
+..+++..+.+...-..+.+.++.+.++-+....++......+.. .|-..|+.+.+.|+..... +..+...++.+.
T Consensus 581 L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~vl~~l~~~~P~LS~AEr~~~~EL~~~~~~-l~~l~~si~~lk 659 (717)
T PF10168_consen 581 LQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVDRVLQLLNSQLPVLSEAEREFKKELERMKDQ-LQDLKASIEQLK 659 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 333444444444444445556666666666666666655555544 3556678887777765553 566777777777
Q ss_pred HHHHHHHH
Q psy11969 143 CKLQRTTA 150 (170)
Q Consensus 143 ~~l~~l~~ 150 (170)
..++....
T Consensus 660 ~k~~~Q~~ 667 (717)
T PF10168_consen 660 KKLDYQQR 667 (717)
T ss_pred HHHHHHHH
Confidence 66665443
No 24
>KOG4367|consensus
Probab=68.05 E-value=55 Score=28.48 Aligned_cols=41 Identities=27% Similarity=0.276 Sum_probs=24.4
Q ss_pred HHHHHHHHhcccccccCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11969 26 LLTDLSQNLQLLSEKARSTTEFIKRLKSIADLLNTDLSQNLQLLSEKARSTT 77 (170)
Q Consensus 26 ~~~~~~~~~~~~~~~~~Hk~H~v~~leeA~~~~K~~L~~~l~~L~~~~~e~~ 77 (170)
-.++|||+||.+|+.++ + +.++-.+|+...+.+++.-.+.+
T Consensus 270 hksqls~al~~lsdrak----------~-a~e~l~~lr~m~~~iq~n~~ef~ 310 (699)
T KOG4367|consen 270 HKSQLSQALNGLSDRAK----------E-AKEFLVQLRNMVQQIQENSVEFE 310 (699)
T ss_pred hHHHHHHHHHHHHHHHH----------H-HHHHHHHHHHHHHHHHhcchhHH
Confidence 36899999999997532 2 23333455555555555444433
No 25
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=66.75 E-value=57 Score=25.09 Aligned_cols=97 Identities=11% Similarity=0.031 Sum_probs=59.7
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH--------HHHHHHH
Q psy11969 48 IKRLKSIADLLNTDLSQNLQLLSEKARSTTEFIKRLKSIADLLNDNSIEFESQIVAQCDALIKAI--------EDRKKQL 119 (170)
Q Consensus 48 v~~leeA~~~~K~~L~~~l~~L~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~I~~~f~~L~~~L--------~e~e~~l 119 (170)
.-|+..+.++.+..+...++.......+........+..+......+..........-..+..-+ +......
T Consensus 70 ~kPi~~~L~~R~~~I~~~L~~Ae~~~~eA~~~l~e~e~~L~~A~~eA~~Ii~~A~~eAe~~~e~i~~~A~~eae~ii~~A 149 (205)
T PRK06231 70 WKPTQRFLNKRKELIEAEINQANELKQQAQQLLENAKQRHENALAQAKEIIDQANYEALQLKSELEKEANRQANLIIFQA 149 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35889999999999999999999988888888888777777766665555544444444332222 2222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11969 120 VDAIRLEKESKQRILREQVSGCACK 144 (170)
Q Consensus 120 l~~Le~e~~~~l~~l~~~~~~l~~~ 144 (170)
...++.+.......+..++..+...
T Consensus 150 ~~~Ie~Ek~~a~~~Lk~ei~~lAv~ 174 (205)
T PRK06231 150 RQEIEKERRELKEQLQKESVELAML 174 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2344455555555555554444433
No 26
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=66.69 E-value=47 Score=24.18 Aligned_cols=57 Identities=18% Similarity=0.078 Sum_probs=43.6
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q psy11969 48 IKRLKSIADLLNTDLSQNLQLLSEKARSTTEFIKRLKSIADLLNDNSIEFESQIVAQ 104 (170)
Q Consensus 48 v~~leeA~~~~K~~L~~~l~~L~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~I~~~ 104 (170)
+-|+....++.+..+...++.......+........+..+...+..+..........
T Consensus 44 ~~Pi~~~l~~R~~~I~~~l~~Ae~~~~ea~~~~~e~e~~L~~A~~ea~~ii~~A~~~ 100 (156)
T CHL00118 44 YKPLLKVLDERKEYIRKNLTKASEILAKANELTKQYEQELSKARKEAQLEITQSQKE 100 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 568999999999999999999998888888888887777776666554444443333
No 27
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=65.78 E-value=86 Score=26.84 Aligned_cols=37 Identities=8% Similarity=0.284 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11969 113 EDRKKQLVDAIRLEKESKQRILREQVSGCACKLQRTT 149 (170)
Q Consensus 113 ~e~e~~ll~~Le~e~~~~l~~l~~~~~~l~~~l~~l~ 149 (170)
...-..+-+.++..-.++.+.+.+.++.++..+..|.
T Consensus 282 KqeLa~~EEK~~Yqs~eRaRdi~E~~Es~qtRisklE 318 (395)
T PF10267_consen 282 KQELASMEEKMAYQSYERARDIWEVMESCQTRISKLE 318 (395)
T ss_pred HHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 3333444455555556666667777777777777666
No 28
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=64.37 E-value=68 Score=25.20 Aligned_cols=64 Identities=11% Similarity=0.113 Sum_probs=29.0
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11969 83 LKSIADLLNDNSIEFESQIVAQCDALIKAIEDRKKQLVDAIRLEKESKQRILREQVSGCACKLQ 146 (170)
Q Consensus 83 l~~~~~~~~~~~~~~~~~I~~~f~~L~~~L~e~e~~ll~~Le~e~~~~l~~l~~~~~~l~~~l~ 146 (170)
+...+..+.......+.......+.+..-|...-..+...++.+......+-...++.+.....
T Consensus 97 L~~ri~~L~~~i~ee~~~r~~~ie~~~~~l~~~l~~l~~~~~~Er~~R~erE~~i~krl~e~~~ 160 (247)
T PF06705_consen 97 LNDRIEALEEEIQEEKEERPQDIEELNQELVRELNELQEAFENERNEREEREENILKRLEEEEN 160 (247)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444455555555555555555444444444444443333
No 29
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=63.16 E-value=86 Score=25.92 Aligned_cols=78 Identities=12% Similarity=0.033 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11969 74 RSTTEFIKRLKSIADLLNDNSIEFESQIVAQCDALIKAIEDRKKQLVDAIRLEKESKQRILREQVSGCACKLQRTTAL 151 (170)
Q Consensus 74 ~e~~~~~~~l~~~~~~~~~~~~~~~~~I~~~f~~L~~~L~e~e~~ll~~Le~e~~~~l~~l~~~~~~l~~~l~~l~~~ 151 (170)
..+...+..+....-.+..+++.....|.+.+-+=...|..++..+...++.++......|...+.++...-..+...
T Consensus 51 ~~L~~e~~~lr~~sv~~~~~aEqEEE~isN~LlKkl~~l~keKe~L~~~~e~EEE~ltn~L~rkl~qLr~EK~~lE~~ 128 (310)
T PF09755_consen 51 KHLQEENRALREASVRIQAKAEQEEEFISNTLLKKLQQLKKEKETLALKYEQEEEFLTNDLSRKLNQLRQEKVELENQ 128 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344444444455566666677776665555668888888888888887777777777766666555444333
No 30
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=62.59 E-value=58 Score=23.79 Aligned_cols=95 Identities=11% Similarity=0.061 Sum_probs=58.4
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH--------HHHHHHHHHH
Q psy11969 48 IKRLKSIADLLNTDLSQNLQLLSEKARSTTEFIKRLKSIADLLNDNSIEFESQIVAQCDALI--------KAIEDRKKQL 119 (170)
Q Consensus 48 v~~leeA~~~~K~~L~~~l~~L~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~I~~~f~~L~--------~~L~e~e~~l 119 (170)
.-||..+.++.+..+...+........+........+..+...+..+..........-.... .-........
T Consensus 30 ~~pi~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~l~~A~~ea~~ii~~A~~~a~~~~~~~~~~A~~ea~~~~~~a 109 (164)
T PRK14471 30 WKPILGAVKEREDSIKNALASAEEARKEMQNLQADNERLLKEARAERDAILKEAREIKEKMIADAKEEAQVEGDKMIEQA 109 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56899999999999999999999888888888877777666666554443333333332222 1222222223
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy11969 120 VDAIRLEKESKQRILREQVSGCA 142 (170)
Q Consensus 120 l~~Le~e~~~~l~~l~~~~~~l~ 142 (170)
...|+.+.......+...+..+.
T Consensus 110 ~~~i~~ek~~a~~~l~~~i~~la 132 (164)
T PRK14471 110 KASIESEKNAAMAEIKNQVANLS 132 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455555555555555555443
No 31
>PF00643 zf-B_box: B-box zinc finger; InterPro: IPR000315 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents B-box-type zinc finger domains, which are around 40 residues in length. B-box zinc fingers can be divided into two groups, where types 1 and 2 B-box domains differ in their consensus sequence and in the spacing of the 7-8 zinc-binding residues. Several proteins contain both types 1 and 2 B-boxes, suggesting some level of cooperativity between these two domains. B-box domains are found in over 1500 proteins from a variety of organisms. They are found in TRIM (tripartite motif) proteins that consist of an N-terminal RING finger (originally called an A-box), followed by 1-2 B-box domains and a coiled-coil domain (also called RBCC for Ring, B-box, Coiled-Coil). TRIM proteins contain a type 2 B-box domain, and may also contain a type 1 B-box. In proteins that do not contain RING or coiled-coil domains, the B-box domain is primarily type 2. Many type 2 B-box proteins are involved in ubiquitinylation. Proteins containing a B-box zinc finger domain include transcription factors, ribonucleoproteins and proto-oncoproteins; for example, MID1, MID2, TRIM9, TNL, TRIM36, TRIM63, TRIFIC, NCL1 and CONSTANS-like proteins []. The microtubule-associated E3 ligase MID1 (6.3.2 from EC) contains a type 1 B-box zinc finger domain. MID1 specifically binds Alpha-4, which in turn recruits the catalytic subunit of phosphatase 2A (PP2Ac). This complex is required for targeting of PP2Ac for proteasome-mediated degradation. The MID1 B-box coordinates two zinc ions and adopts a beta/beta/alpha cross-brace structure similar to that of ZZ, PHD, RING and FYVE zinc fingers [, ]. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 3DDT_B 2D8U_A 3Q1D_A 2EGM_A 2YVR_B 2DJA_A 2DQ5_A 2JUN_A 2YRG_A 2DID_A ....
Probab=62.26 E-value=2.5 Score=23.54 Aligned_cols=14 Identities=7% Similarity=-0.104 Sum_probs=10.6
Q ss_pred ccccccCcccccccch
Q psy11969 36 LLSEKARSTTEFIKRL 51 (170)
Q Consensus 36 ~~~~~~~Hk~H~v~~l 51 (170)
|... .|++|.++||
T Consensus 29 C~~~--~H~~H~~~~i 42 (42)
T PF00643_consen 29 CTVS--GHKGHKIVPI 42 (42)
T ss_dssp HHHT--STTTSEEEEC
T ss_pred CCCC--CCCCCEEeEC
Confidence 5544 4999999986
No 32
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=62.00 E-value=77 Score=24.98 Aligned_cols=20 Identities=5% Similarity=0.182 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy11969 104 QCDALIKAIEDRKKQLVDAI 123 (170)
Q Consensus 104 ~f~~L~~~L~e~e~~ll~~L 123 (170)
+|......|..++...++.|
T Consensus 36 e~~kE~~~L~~Er~~h~eeL 55 (230)
T PF10146_consen 36 EYRKEMEELLQERMAHVEEL 55 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444433
No 33
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=61.95 E-value=60 Score=23.69 Aligned_cols=93 Identities=15% Similarity=0.150 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------H-HH
Q psy11969 66 LQLLSEKARSTTEFIKRLKSIADLLNDNSIEFESQIVAQCDALIKAIEDRKKQLVDA-------------------I-RL 125 (170)
Q Consensus 66 l~~L~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~I~~~f~~L~~~L~e~e~~ll~~-------------------L-e~ 125 (170)
+..|+......+.........+..++.++......+......++.+|.......... + +.
T Consensus 43 l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e~~~~~~~~~~vL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~ 122 (160)
T PF13094_consen 43 LELLQEEIEKEEAALERDYEYLQELEKNAKALEREREEEEKKAHPVLQLDDSGVLELPELPQKSLLEASESRFAPTLCDE 122 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhccccccccccccccccccccccccccCcccchH
Confidence 334555555555555555556666666666666666666666666664443222221 2 44
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11969 126 EKESKQRILREQVSGCACKLQRTTALLQFCIEA 158 (170)
Q Consensus 126 e~~~~l~~l~~~~~~l~~~l~~l~~~i~~l~e~ 158 (170)
+-......+...++.+......+.++...++..
T Consensus 123 el~~l~~ql~~hl~s~~~n~~~l~~~~~~ie~~ 155 (160)
T PF13094_consen 123 ELLPLLKQLNKHLESMQNNLQQLKGLLEAIERS 155 (160)
T ss_pred HHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHH
Confidence 555555556655666666665566655555543
No 34
>PF00430 ATP-synt_B: ATP synthase B/B' CF(0); InterPro: IPR002146 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunits B and B' from the F0 complex in F-ATPases found in chloroplasts and in bacterial plasma membranes. The B subunits are part of the peripheral stalk that links the F1 and F0 complexes together, and which acts as a stator to prevent certain subunits from rotating with the central rotary element. The peripheral stalk differs in subunit composition between mitochondrial, chloroplast and bacterial F-ATPases. In bacterial and chloroplast F-ATPases, the peripheral stalk is composed of one copy of the delta subunit (homologous to OSCP in mitochondria), and two copies of subunit B in bacteria, or one copy each of subunits B and B' in chloroplasts and photosynthetic bacteria []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0045263 proton-transporting ATP synthase complex, coupling factor F(o); PDB: 1L2P_A 2KHK_A 1B9U_A.
Probab=58.15 E-value=59 Score=22.43 Aligned_cols=49 Identities=12% Similarity=0.167 Sum_probs=29.9
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q psy11969 48 IKRLKSIADLLNTDLSQNLQLLSEKARSTTEFIKRLKSIADLLNDNSIE 96 (170)
Q Consensus 48 v~~leeA~~~~K~~L~~~l~~L~~~~~e~~~~~~~l~~~~~~~~~~~~~ 96 (170)
.-|+....++.+..+...++.......+...........+......+..
T Consensus 21 ~~pi~~~l~~R~~~I~~~~~~a~~~~~ea~~~~~e~~~~l~~a~~ea~~ 69 (132)
T PF00430_consen 21 YKPIKKFLDERKAKIQSELEEAEELKEEAEQLLAEYEEKLAEAREEAQE 69 (132)
T ss_dssp HHHHHHHCS--S-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467777777777777777777777777776666666555555544433
No 35
>PF14723 SSFA2_C: Sperm-specific antigen 2 C-terminus
Probab=57.84 E-value=80 Score=23.83 Aligned_cols=42 Identities=21% Similarity=0.239 Sum_probs=24.2
Q ss_pred CCCCchHH------HHHHHHHHHHHHHHHhcccccccCcccccccchH
Q psy11969 11 STPRPSAY------KAALVFKLLTDLSQNLQLLSEKARSTTEFIKRLK 52 (170)
Q Consensus 11 ~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~Hk~H~v~~le 52 (170)
+.|.|.+- +-+-|-+.+-+|-.++|-++-..-+.|+++....
T Consensus 42 ~~~~P~~~~~~~~~~EmQlrrvLhdir~t~q~l~q~~~~~g~~~~~~~ 89 (179)
T PF14723_consen 42 SSPGPAPSVCRPSSTEMQLRRVLHDIRDTLQNLSQYPVMRGSDLNADP 89 (179)
T ss_pred CCCCCCCccccccCHHHHHHHHHHHHHHHHHHhccccccccccccccc
Confidence 55556653 3344555555665555555555568888776554
No 36
>PRK07353 F0F1 ATP synthase subunit B'; Validated
Probab=57.55 E-value=65 Score=22.72 Aligned_cols=56 Identities=7% Similarity=0.024 Sum_probs=42.7
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q psy11969 48 IKRLKSIADLLNTDLSQNLQLLSEKARSTTEFIKRLKSIADLLNDNSIEFESQIVA 103 (170)
Q Consensus 48 v~~leeA~~~~K~~L~~~l~~L~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~I~~ 103 (170)
+-||....++.+..+...+........+........+..+......+.........
T Consensus 27 ~~pi~~~l~~R~~~I~~~l~~Ae~~~~ea~~~~~~~e~~L~~a~~ea~~i~~~a~~ 82 (140)
T PRK07353 27 YKPVGKVVEEREDYIRTNRAEAKERLAEAEKLEAQYEQQLASARKQAQAVIAEAEA 82 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46899999999999999999999888888888888777777666555444443333
No 37
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=55.98 E-value=1.2e+02 Score=25.49 Aligned_cols=83 Identities=17% Similarity=0.144 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11969 72 KARSTTEFIKRLKSIADLLNDNSIEFESQIVAQCDALIKAIEDRKKQLVDAIRLEKESKQRILREQVSGCACKLQRTTAL 151 (170)
Q Consensus 72 ~~~e~~~~~~~l~~~~~~~~~~~~~~~~~I~~~f~~L~~~L~e~e~~ll~~Le~e~~~~l~~l~~~~~~l~~~l~~l~~~ 151 (170)
...+....+.++...+....++....+..|...|+.+.+-.......+ ..+.. +.+.....+..+...+..++.-
T Consensus 235 ~~~~~~~~L~kl~~~i~~~lekI~sREk~iN~qle~l~~eYr~~~~~l-s~~~~----~y~~~s~~V~~~t~~L~~Isee 309 (359)
T PF10498_consen 235 ALPETKSQLDKLQQDISKTLEKIESREKYINNQLEPLIQEYRSAQDEL-SEVQE----KYKQASEGVSERTRELAEISEE 309 (359)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH-HHHHH----HHHHHhhHHHHHHHHHHHHHHH
Confidence 333444444444445555555666666667676666655433222221 22221 2223333444444444444444
Q ss_pred HHHHHHHh
Q psy11969 152 LQFCIEAL 159 (170)
Q Consensus 152 i~~l~e~l 159 (170)
+..++..+
T Consensus 310 Le~vK~em 317 (359)
T PF10498_consen 310 LEQVKQEM 317 (359)
T ss_pred HHHHHHHH
Confidence 44444444
No 38
>PF05597 Phasin: Poly(hydroxyalcanoate) granule associated protein (phasin); InterPro: IPR008769 Polyhydroxyalkanoates (PHAs) are storage polyesters synthesised by various bacteria as intracellular carbon and energy reserve material. PHAs are accumulated as water-insoluble inclusions within the cells. This family consists of the phasins PhaF and PhaI which act as a transcriptional regulator of PHA biosynthesis genes. PhaF has been proposed to repress expression of the phaC1 gene and the phaIF operon.
Probab=55.96 E-value=73 Score=22.85 Aligned_cols=62 Identities=13% Similarity=0.269 Sum_probs=49.2
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11969 88 DLLNDNSIEFESQIVAQCDALIKAIEDRKKQLVDAIRLEKESKQRILREQVSGCACKLQRTT 149 (170)
Q Consensus 88 ~~~~~~~~~~~~~I~~~f~~L~~~L~e~e~~ll~~Le~e~~~~l~~l~~~~~~l~~~l~~l~ 149 (170)
+.+...+......+....+++-..++++-...|..|.-=....+..|...+..|...+..+.
T Consensus 68 ~~~~~~~~~~~~~~~~~~dklE~~fd~rV~~aL~rLgvPs~~dv~~L~~rId~L~~~v~~l~ 129 (132)
T PF05597_consen 68 DQVKSRVDDVKERATGQWDKLEQAFDERVARALNRLGVPSRKDVEALSARIDQLTAQVERLA 129 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 34446667777888888889999999999999999887777777788888888877777654
No 39
>PRK13455 F0F1 ATP synthase subunit B; Provisional
Probab=55.22 E-value=86 Score=23.42 Aligned_cols=94 Identities=10% Similarity=0.121 Sum_probs=56.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH----HHHHHHHHHHHHH----HHHHHHHH
Q psy11969 50 RLKSIADLLNTDLSQNLQLLSEKARSTTEFIKRLKSIADLLNDNSIEFESQ----IVAQCDALIKAIE----DRKKQLVD 121 (170)
Q Consensus 50 ~leeA~~~~K~~L~~~l~~L~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~----I~~~f~~L~~~L~----e~e~~ll~ 121 (170)
||....++.+..+...+........+........+..+......+...... .....+....-.+ ........
T Consensus 51 ~v~~~L~~R~~~I~~~l~~Ae~~~~eA~~~l~e~e~~L~~A~~ea~~Ii~~A~~~a~~~~e~~~~~a~~ea~~~~~~A~~ 130 (184)
T PRK13455 51 MIGGMLDKRAEGIRSELEEARALREEAQTLLASYERKQREVQEQADRIVAAAKDEAQAAAEQAKADLEASIARRLAAAED 130 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578888999999999999988888888887777776666665554443333 2222222222222 22333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy11969 122 AIRLEKESKQRILREQVSGCAC 143 (170)
Q Consensus 122 ~Le~e~~~~l~~l~~~~~~l~~ 143 (170)
.|+.+.......++..+..+..
T Consensus 131 ~I~~ek~~a~~~l~~~i~~lA~ 152 (184)
T PRK13455 131 QIASAEAAAVKAVRDRAVSVAV 152 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5556666666666555555443
No 40
>PF00804 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins A and B are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane. Syntaxins are a family of receptors for intracellular transport vesicles. Each target membrane may be identified by a specific member of the syntaxin family []. Members of the syntaxin family [, ] have a size ranging from 30 Kd to 40 Kd; a C-terminal extremity which is highly hydrophobic and anchors the protein on the cytoplasmic surface of cellular membranes; a central, well conserved region, which seems to be in a coiled-coil conformation. ; GO: 0016020 membrane; PDB: 1S94_B 1EZ3_A 3C98_B 1BR0_A 1FIO_A 2XHE_B.
Probab=54.43 E-value=57 Score=21.14 Aligned_cols=67 Identities=10% Similarity=0.152 Sum_probs=38.8
Q ss_pred chHH-HHHHHHHHHHHHHHHhcccccccCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11969 15 PSAY-KAALVFKLLTDLSQNLQLLSEKARSTTEFIKRLKSIADLLNTDLSQNLQLLSEKARSTTEFIKRLKS 85 (170)
Q Consensus 15 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Hk~H~v~~leeA~~~~K~~L~~~l~~L~~~~~e~~~~~~~l~~ 85 (170)
|.|| .+..+-...+.++.+++.+.. .|..+-..|-.+ ...+.++.............+...+..+..
T Consensus 3 ~~f~~~v~~i~~~i~~i~~~~~~l~~--l~~~~l~~~~~d--~~~~~el~~l~~~i~~~~~~~~~~lk~l~~ 70 (103)
T PF00804_consen 3 PEFFDEVQEIREDIDKIKEKLNELRK--LHKKILSSPDQD--SELKRELDELTDEIKQLFQKIKKRLKQLSK 70 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHTSSSHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhcCCCCcc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444 355666677788888888765 577665555543 445555555555555554455544444433
No 41
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=52.91 E-value=1.2e+02 Score=24.40 Aligned_cols=54 Identities=15% Similarity=0.110 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11969 104 QCDALIKAIEDRKKQLVDAIRLEKESKQRILREQVSGCACKLQRTTALLQFCIE 157 (170)
Q Consensus 104 ~f~~L~~~L~e~e~~ll~~Le~e~~~~l~~l~~~~~~l~~~l~~l~~~i~~l~e 157 (170)
.|....+.|+-.-..-+.....+-+...+..+..+..+++++..+...+.-.++
T Consensus 49 ~~~~~i~~le~~~~~~l~~ak~eLqe~eek~e~~l~~Lq~ql~~l~akI~k~~~ 102 (258)
T PF15397_consen 49 IYRTAIDILEYSNHKQLQQAKAELQEWEEKEESKLSKLQQQLEQLDAKIQKTQE 102 (258)
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 455666667666666666666666666666666666666666666655554443
No 42
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=51.93 E-value=95 Score=22.95 Aligned_cols=98 Identities=14% Similarity=0.162 Sum_probs=60.3
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH----H----HHHHHHHHH
Q psy11969 48 IKRLKSIADLLNTDLSQNLQLLSEKARSTTEFIKRLKSIADLLNDNSIEFESQIVAQCDALI----K----AIEDRKKQL 119 (170)
Q Consensus 48 v~~leeA~~~~K~~L~~~l~~L~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~I~~~f~~L~----~----~L~e~e~~l 119 (170)
+-||....++.+..+...+........+........+..+......+..........-.... . -.+......
T Consensus 38 ~kpi~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~ii~~A~~ea~~~~~~~~~~A~~ea~~~~~~a 117 (173)
T PRK13460 38 WDVILKALDERASGVQNDINKASELRLEAEALLKDYEARLNSAKDEANAIVAEAKSDALKLKNKLLEETNNEVKAQKDQA 117 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46899999999999999999999888888887777766666666555444433333333222 2 222222333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11969 120 VDAIRLEKESKQRILREQVSGCACKL 145 (170)
Q Consensus 120 l~~Le~e~~~~l~~l~~~~~~l~~~l 145 (170)
...|+.+.+.....+..++..+.-.+
T Consensus 118 ~~~ie~e~~~a~~el~~ei~~lA~~~ 143 (173)
T PRK13460 118 VKEIELAKGKALSQLQNQIVEMTITI 143 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455666666666666655554433
No 43
>KOG2129|consensus
Probab=51.71 E-value=1.6e+02 Score=25.54 Aligned_cols=11 Identities=36% Similarity=0.452 Sum_probs=6.1
Q ss_pred HHHHHHHhccc
Q psy11969 27 LTDLSQNLQLL 37 (170)
Q Consensus 27 ~~~~~~~~~~~ 37 (170)
-++||.+|-.+
T Consensus 131 Tn~Lsrkl~qL 141 (552)
T KOG2129|consen 131 TNPLSRKLKQL 141 (552)
T ss_pred cCchhHHHHHH
Confidence 34566666555
No 44
>PF15079 DUF4546: Domain of unknown function (DUF4546)
Probab=51.39 E-value=69 Score=24.10 Aligned_cols=15 Identities=20% Similarity=0.120 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHH
Q psy11969 100 QIVAQCDALIKAIED 114 (170)
Q Consensus 100 ~I~~~f~~L~~~L~e 114 (170)
-...+|++|+.|++-
T Consensus 76 iMDKDFDKL~EFVEI 90 (205)
T PF15079_consen 76 IMDKDFDKLHEFVEI 90 (205)
T ss_pred HHhhhHHHHHHHHHH
Confidence 345689999998764
No 45
>cd00021 BBOX B-Box-type zinc finger; zinc binding domain (CHC3H2); often present in combination with other motifs, like RING zinc finger, NHL motif, coiled-coil or RFP domain in functionally unrelated proteins, most likely mediating protein-protein interaction.
Probab=50.95 E-value=6 Score=21.31 Aligned_cols=16 Identities=6% Similarity=-0.211 Sum_probs=11.7
Q ss_pred hcccccccCcccccccch
Q psy11969 34 LQLLSEKARSTTEFIKRL 51 (170)
Q Consensus 34 ~~~~~~~~~Hk~H~v~~l 51 (170)
..|... .|++|.++||
T Consensus 24 ~~C~~~--~H~~H~~~~i 39 (39)
T cd00021 24 VDCDLS--VHSGHRRVPL 39 (39)
T ss_pred hhcChh--hcCCCCEeeC
Confidence 456544 3999999885
No 46
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=50.22 E-value=1.3e+02 Score=23.94 Aligned_cols=17 Identities=18% Similarity=0.304 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy11969 63 SQNLQLLSEKARSTTEF 79 (170)
Q Consensus 63 ~~~l~~L~~~~~e~~~~ 79 (170)
...+..++.+.+..+..
T Consensus 65 e~ei~~~r~r~~~~e~k 81 (239)
T COG1579 65 ESEIQEIRERIKRAEEK 81 (239)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444433
No 47
>PHA03188 UL14 tegument protein; Provisional
Probab=50.22 E-value=1.1e+02 Score=23.33 Aligned_cols=49 Identities=20% Similarity=0.287 Sum_probs=30.0
Q ss_pred cccccchHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy11969 45 TEFIKRLKSIADLLNTDL--SQNLQLLSEKARSTTEFIKRLKSIADLLNDN 93 (170)
Q Consensus 45 ~H~v~~leeA~~~~K~~L--~~~l~~L~~~~~e~~~~~~~l~~~~~~~~~~ 93 (170)
-|.+.+.++|..+++..| ...+..++.+...++.-+.........+..+
T Consensus 48 V~AFTsAK~A~~dl~rqLrs~aRve~veQK~r~Iq~rVeeQ~a~r~iL~~n 98 (199)
T PHA03188 48 VHAFTAAKDACADLNNNIRSAARIAAVEQKIADIQEKVEEQTSIQKILNAN 98 (199)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 356677888888888888 4556666666666665554433333333333
No 48
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=50.02 E-value=1e+02 Score=22.81 Aligned_cols=97 Identities=14% Similarity=0.129 Sum_probs=60.4
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH----HHHHHHHHH----HHH
Q psy11969 48 IKRLKSIADLLNTDLSQNLQLLSEKARSTTEFIKRLKSIADLLNDNSIEFESQIVAQCDA----LIKAIEDRK----KQL 119 (170)
Q Consensus 48 v~~leeA~~~~K~~L~~~l~~L~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~I~~~f~~----L~~~L~e~e----~~l 119 (170)
.-||..+.++.++.+...++.......+........+..+......+..........-.. +..--+.+- ...
T Consensus 40 ~~pi~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~ii~~a~~~a~~~~~~~~~~A~~ea~~~~~~A 119 (173)
T PRK13453 40 WGPLKDVMDKRERDINRDIDDAEQAKLNAQKLEEENKQKLKETQEEVQKILEDAKVQARQQQEQIIHEANVRANGMIETA 119 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468999999999999999999998888888887777777666665554444444333332 222222222 223
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11969 120 VDAIRLEKESKQRILREQVSGCACK 144 (170)
Q Consensus 120 l~~Le~e~~~~l~~l~~~~~~l~~~ 144 (170)
...|+.+.......+...+..+...
T Consensus 120 ~~~I~~ek~~a~~~l~~ei~~lA~~ 144 (173)
T PRK13453 120 QSEINSQKERAIADINNQVSELSVL 144 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555555666665555554433
No 49
>KOG4848|consensus
Probab=48.89 E-value=1.2e+02 Score=23.33 Aligned_cols=22 Identities=9% Similarity=0.166 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy11969 113 EDRKKQLVDAIRLEKESKQRIL 134 (170)
Q Consensus 113 ~e~e~~ll~~Le~e~~~~l~~l 134 (170)
..+...||++.+.++..+++..
T Consensus 188 d~RF~emLqqkEkeekK~~Kea 209 (225)
T KOG4848|consen 188 DPRFEEMLQQKEKEEKKAVKEA 209 (225)
T ss_pred CHHHHHHHHHHHHHHHHHHHHH
Confidence 4566778888877776666544
No 50
>PRK05759 F0F1 ATP synthase subunit B; Validated
Probab=48.81 E-value=98 Score=22.20 Aligned_cols=95 Identities=12% Similarity=0.103 Sum_probs=58.4
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH----HHHHHHHHHHHHHHHH--
Q psy11969 48 IKRLKSIADLLNTDLSQNLQLLSEKARSTTEFIKRLKSIADLLNDNSIEFESQIVAQC----DALIKAIEDRKKQLVD-- 121 (170)
Q Consensus 48 v~~leeA~~~~K~~L~~~l~~L~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~I~~~f----~~L~~~L~e~e~~ll~-- 121 (170)
+-||....++.+..+...++.......+.+......+..+......+..........- ..+..-.+.+-..+..
T Consensus 26 ~~pi~~~l~~R~~~I~~~l~~a~~~~~~a~~~~~e~~~~l~~a~~ea~~i~~~a~~ea~~~~~~~~~~a~~ea~~~~~~a 105 (156)
T PRK05759 26 WPPIMKALEERQKKIADGLAAAERAKKELELAQAKYEAQLAEARAEAAEIIEQAKKRAAQIIEEAKAEAEAEAARIKAQA 105 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4689999999999999999999998888888888877777666655544444333333 3333333333333332
Q ss_pred --HHHHHHHHHHHHHHHHHHHHH
Q psy11969 122 --AIRLEKESKQRILREQVSGCA 142 (170)
Q Consensus 122 --~Le~e~~~~l~~l~~~~~~l~ 142 (170)
.|..+.......+...+..+.
T Consensus 106 ~~~i~~e~~~a~~~l~~~~~~lA 128 (156)
T PRK05759 106 QAEIEQERKRAREELRKQVADLA 128 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444545544444433
No 51
>PF10158 LOH1CR12: Tumour suppressor protein; InterPro: IPR018780 This entry represents a region of 130 amino acids that is the most conserved part of some hypothetical proteins involved in loss of heterozygosity, and thus, tumour suppression []. The exact function of these proteins is not known.
Probab=48.10 E-value=1e+02 Score=22.10 Aligned_cols=62 Identities=21% Similarity=0.312 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Q psy11969 100 QIVAQCDALIKAIEDRKKQLVDAIRLEKESKQRILREQVSGCACKLQRTTALLQFCIEALKETD 163 (170)
Q Consensus 100 ~I~~~f~~L~~~L~e~e~~ll~~Le~e~~~~l~~l~~~~~~l~~~l~~l~~~i~~l~e~l~~~~ 163 (170)
.+...+..+...+.++.+.+-.-.+... +...+...+..+...+..+-..++.+...|-+.+
T Consensus 60 evd~~~~~l~~~~~erqk~~~k~ae~L~--kv~els~~L~~~~~lL~~~v~~ie~LN~~LP~~~ 121 (131)
T PF10158_consen 60 EVDQEIAKLLQQMVERQKRFAKFAEQLE--KVNELSQQLSRCQSLLNQTVPSIETLNEILPEEE 121 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhh
Confidence 3444566666666666666655444332 3777888888888888888888888888875544
No 52
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=47.42 E-value=1.3e+02 Score=23.15 Aligned_cols=50 Identities=8% Similarity=0.127 Sum_probs=38.2
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q psy11969 48 IKRLKSIADLLNTDLSQNLQLLSEKARSTTEFIKRLKSIADLLNDNSIEF 97 (170)
Q Consensus 48 v~~leeA~~~~K~~L~~~l~~L~~~~~e~~~~~~~l~~~~~~~~~~~~~~ 97 (170)
+-||....++.+..+...+........+........+..+...+..+...
T Consensus 75 ~~pI~~vLe~R~~~I~~~L~~Ae~~k~eAe~~~~~ye~~L~~Ar~eA~~I 124 (204)
T PRK09174 75 LPRIGGIIETRRDRIAQDLDQAARLKQEADAAVAAYEQELAQARAKAHSI 124 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45888899999999999999888888888887777776666665544443
No 53
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=47.30 E-value=1.1e+02 Score=22.53 Aligned_cols=95 Identities=9% Similarity=0.102 Sum_probs=58.4
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH--------HHHHHHHH
Q psy11969 48 IKRLKSIADLLNTDLSQNLQLLSEKARSTTEFIKRLKSIADLLNDNSIEFESQIVAQCDALIKA--------IEDRKKQL 119 (170)
Q Consensus 48 v~~leeA~~~~K~~L~~~l~~L~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~I~~~f~~L~~~--------L~e~e~~l 119 (170)
.-||....++.+..+...+........+........+..+...+..+..........-.....- ........
T Consensus 40 ~kpi~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~L~~a~~ea~~ii~~A~~~a~~~~~~~~~~A~~ea~~~~~~a 119 (175)
T PRK14472 40 WGPILSALEEREKGIQSSIDRAHSAKDEAEAILRKNRELLAKADAEADKIIREGKEYAEKLRAEITEKAHTEAKKMIASA 119 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4689999999999999999999998888888777777766666655544444333333322222 22222233
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy11969 120 VDAIRLEKESKQRILREQVSGCA 142 (170)
Q Consensus 120 l~~Le~e~~~~l~~l~~~~~~l~ 142 (170)
...|+.+.......+...+..+.
T Consensus 120 ~~~I~~e~~~a~~~l~~~i~~lA 142 (175)
T PRK14472 120 KEEIEQEKRRALDVLRNEVADLA 142 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455555555555555554443
No 54
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=47.09 E-value=2.9e+02 Score=27.17 Aligned_cols=19 Identities=16% Similarity=0.193 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy11969 62 LSQNLQLLSEKARSTTEFI 80 (170)
Q Consensus 62 L~~~l~~L~~~~~e~~~~~ 80 (170)
+...+........+++..+
T Consensus 612 ~~~~l~~~~~~~~~~e~~l 630 (1201)
T PF12128_consen 612 AEDQLQSAEERQEELEKQL 630 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 55
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=47.02 E-value=1.1e+02 Score=22.05 Aligned_cols=44 Identities=20% Similarity=0.206 Sum_probs=20.2
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy11969 48 IKRLKSIADLLNTDLSQNLQLLSEKARSTTEFIKRLKSIADLLN 91 (170)
Q Consensus 48 v~~leeA~~~~K~~L~~~l~~L~~~~~e~~~~~~~l~~~~~~~~ 91 (170)
.+..-+--...++.+...+..+...+..+...+..++......+
T Consensus 43 Ll~~~~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~e 86 (151)
T PF11559_consen 43 LLQQRDRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELE 86 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444455555555555554444444444444444333
No 56
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=46.71 E-value=1.3e+02 Score=23.10 Aligned_cols=70 Identities=11% Similarity=0.092 Sum_probs=37.9
Q ss_pred CcccccccchH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11969 42 RSTTEFIKRLK-SIADLLNTDLSQNLQLLSEKARSTTEFIKRLKSIADLLNDNSIEFESQIVAQCDALIKAIEDRKKQLV 120 (170)
Q Consensus 42 ~Hk~H~v~~le-eA~~~~K~~L~~~l~~L~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~I~~~f~~L~~~L~e~e~~ll 120 (170)
..+|-++.... .-|++ ..|+..|..|..++..++.....- ......--.-|..+|+.|-.+-+..-..+-
T Consensus 82 ~~~gTdfS~~~~~dwEe--vrLkrELa~Le~~l~~~~~~~~~~-------~~~~~~~~~lvk~e~EqLL~YK~~ql~~~~ 152 (195)
T PF12761_consen 82 KEKGTDFSATEGTDWEE--VRLKRELAELEEKLSKVEQAAESR-------RSDTDSKPALVKREFEQLLDYKERQLRELE 152 (195)
T ss_pred CCCCCCCCCCCCCchHH--HHHHHHHHHHHHHHHHHHHHHHhc-------ccCCcchHHHHHHHHHHHHHHHHHHHHhhh
Confidence 45566665542 23333 256677777776666666543221 111122234556788888777766665553
No 57
>PRK14473 F0F1 ATP synthase subunit B; Provisional
Probab=46.26 E-value=1.1e+02 Score=22.22 Aligned_cols=97 Identities=8% Similarity=0.080 Sum_probs=59.9
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH----HHHHHHH----HHHHH
Q psy11969 48 IKRLKSIADLLNTDLSQNLQLLSEKARSTTEFIKRLKSIADLLNDNSIEFESQIVAQCDA----LIKAIED----RKKQL 119 (170)
Q Consensus 48 v~~leeA~~~~K~~L~~~l~~L~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~I~~~f~~----L~~~L~e----~e~~l 119 (170)
.-||..+.++.+..+...+........+........+..+......+..........-.. +..--+. .....
T Consensus 30 ~kpi~~~l~~R~~~I~~~l~~Ae~~~~ea~~~~~e~e~~l~~A~~ea~~ii~~A~~~a~~~~~~~l~~A~~ea~~~~~~a 109 (164)
T PRK14473 30 YRPVLNLLNERTRRIEESLRDAEKVREQLANAKRDYEAELAKARQEAAKIVAQAQERARAQEAEIIAQARREAEKIKEEA 109 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468999999999999999999998888888888887776666665554444444333322 2222222 22223
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11969 120 VDAIRLEKESKQRILREQVSGCACK 144 (170)
Q Consensus 120 l~~Le~e~~~~l~~l~~~~~~l~~~ 144 (170)
...|+.+.......+...+..+.-.
T Consensus 110 ~~~I~~ek~~a~~~L~~~i~~la~~ 134 (164)
T PRK14473 110 RAQAEQERQRMLSELKSQIADLVTL 134 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555555555555555554433
No 58
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=44.12 E-value=3.2e+02 Score=26.77 Aligned_cols=33 Identities=12% Similarity=0.229 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q psy11969 63 SQNLQLLSEKARSTTEFIKRLKSIADLLNDNSI 95 (170)
Q Consensus 63 ~~~l~~L~~~~~e~~~~~~~l~~~~~~~~~~~~ 95 (170)
...+.........+...+..+...+..+...+.
T Consensus 178 ~~~L~~~~~nl~~~~~~~~el~~~l~~L~~q~~ 210 (1163)
T COG1196 178 ERKLERTEENLERLEDLLEELEKQLEKLERQAE 210 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333443444444455555555555555544433
No 59
>PF12925 APP_E2: E2 domain of amyloid precursor protein; InterPro: IPR024329 Amyloid-beta precursor protein (APP, or A4) is associated with Alzheimer's disease (AD), because one of its breakdown products, amyloid-beta (A-beta), aggregates to form amyloid or senile plaques [, ]. Mutations in APP or in proteins that process APP have been linked with early-onset, familial AD. Individuals with Down's syndrome carry an extra copy of chromosome 21, which contains the APP gene, and almost invariably develop amyloid plaques and Alzheimer's symptoms. APP is important for the neurogenesis and neuronal regeneration, either through the intact protein, or through its many breakdown products []. APP consists of a large N-terminal extracellular region containing heparin-binding and copper-binding sites, a short hydrophobic transmembrane domain, and a short C-terminal intracellular domain. The N-terminal region is similar in structure to cysteine-rich growth factors and appears to function as a cell surface receptor, contributing to neurite growth, neuronal adhesion, axonogenesis and cell mobility []. APP acts as a kinesin I membrane receptor to mediate the axonal transport of beta-secretase and presenilin 1. The N-terminal domain can regulate neurite outgrowth through its binding to heparin and collagen I and IV, which are components of the extracellular matrix. APP is also coupled to apoptosis-inducing pathways, and is involved in copper homeostasis/oxidative stress through copper ion reduction, where copper-metallated APP induces neuronal death []. The C-terminal intracellular domain appears to be involved in transcription regulation through protein-protein interactions. APP can promote transcription activation through binding to APBB1/Tip60, and may bind to the adaptor protein FE65 to transactivate a wide variety of different promoters. APP can be processed by different sets of enzymes: In the non-amyloidogenic (non-plaque-forming) pathway, APP is cleaved by alpha-secretase to yield a soluble N-terminal sAPP-alpha (neuroprotective) and a membrane-bound CTF-alpha. CTF-alpha is broken-down by presenilin-containing gamma-secretase to yield soluble p3 and membrane-bound AICD (nuclear signalling). In the amyloidogenic pathway (plaque-forming), APP is broken down by beta-secretase to yield soluble sAPP-beta and membrane-bound CTF-beta. CTF-beta is broken down by gamma-secretase to yield soluble amyloid-beta and membrane-bound AICD. Amyloid-beta is required for neuronal function, but can aggregate to form amyloid plaques that seem to disrupt brain cells by clogging points of cell-cell contact. The E2 domain is the largest of the conserved domains in the amyloidogenic glycoproteins. The structure of E2 consists of two coiled-coil sub-structures connected through a continuous helix, and bears an unexpected resemblance to the spectrin family of protein structures. E2 can reversibly dimerise in solution, and the dimerisation occurs along the longest dimension of the molecule in an antiparallel orientation, which enables the N-terminal substructure of one monomer to pack against the C-terminal substructure of a second monomer. The high degree of conservation of residues at the putative dimer interface suggests that the E2 dimer observed in the crystal could be physiologically relevant. Heparin sulphate proteoglycans, the putative ligands for the precursor present in extracellular matrix, bind to E2 at a conserved and positively charged site near the dimer interface [].; PDB: 3K6B_A 3K66_A 1TKN_A 3NYL_A 3NYJ_A 3UMH_A 3UMK_A 3UMI_A 3QMK_B 3PMR_B ....
Probab=43.28 E-value=1.5e+02 Score=22.76 Aligned_cols=60 Identities=7% Similarity=0.105 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHHHh----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11969 72 KARSTTEFIKRLKSIADLLN----DNSIEFESQIVAQCDALIKAIEDRKKQLVDAIRLEKESKQ 131 (170)
Q Consensus 72 ~~~e~~~~~~~l~~~~~~~~----~~~~~~~~~I~~~f~~L~~~L~e~e~~ll~~Le~e~~~~l 131 (170)
+...+.+.++..+..++.+. ..++..+..+...|......|+++-..--.+|........
T Consensus 42 r~~~VmkeW~eaE~~~~~l~~~DPk~Ae~~k~~m~~rFQ~~v~aLE~e~~~er~qL~~~H~qRV 105 (193)
T PF12925_consen 42 RMTKVMKEWSEAEERYKELPKADPKKAEQFKKEMTQRFQKTVQALEQEAAAERQQLVETHQQRV 105 (193)
T ss_dssp HHHHHHHHHHHHHHTTTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444333222 4567888999999999999999988888888776665544
No 60
>PF12548 DUF3740: Sulfatase protein; InterPro: IPR024609 This uncharacterised domain is found in the C-terminal region of extracellular sulphatase proteins.
Probab=41.44 E-value=1e+02 Score=22.50 Aligned_cols=35 Identities=14% Similarity=0.139 Sum_probs=28.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11969 51 LKSIADLLNTDLSQNLQLLSEKARSTTEFIKRLKS 85 (170)
Q Consensus 51 leeA~~~~K~~L~~~l~~L~~~~~e~~~~~~~l~~ 85 (170)
=..||...|..|...|..|+.+++.+.+....|..
T Consensus 100 d~~aWk~hr~~ID~eIe~Lq~Ki~~LKeiR~hLk~ 134 (145)
T PF12548_consen 100 DPKAWKDHRLHIDHEIETLQDKIKNLKEIRGHLKK 134 (145)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36799999999999999999988888877666543
No 61
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=41.09 E-value=2.4e+02 Score=24.44 Aligned_cols=95 Identities=11% Similarity=0.069 Sum_probs=53.7
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH----HHHHHHHHHHHHHHHH----HHH
Q psy11969 48 IKRLKSIADLLNTDLSQNLQLLSEKARSTTEFIKRLKSIADLLNDNSIEFESQ----IVAQCDALIKAIEDRK----KQL 119 (170)
Q Consensus 48 v~~leeA~~~~K~~L~~~l~~L~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~----I~~~f~~L~~~L~e~e----~~l 119 (170)
+-||....++.++.+...+........++.......+..+...+..+...... .......+..-.+++- ...
T Consensus 23 ~~Pi~~~l~~R~~~I~~~L~eAe~a~~ea~~~~~~~e~~L~~Ak~ea~~Ii~~A~~~A~~~~~~~~~~A~~ea~~i~~~a 102 (445)
T PRK13428 23 VPPVRRLMAARQDTVRQQLAESATAADRLAEADQAHTKAVEDAKAEAARVVEEAREDAERIAEQLRAQADAEAERIKVQG 102 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45788888888889988888888777777777666555555544433332222 2222222322222222 233
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy11969 120 VDAIRLEKESKQRILREQVSGCA 142 (170)
Q Consensus 120 l~~Le~e~~~~l~~l~~~~~~l~ 142 (170)
...|+.+++.....++.++..+-
T Consensus 103 ~~~Ie~ek~~a~~elr~ei~~lA 125 (445)
T PRK13428 103 ARQVQLLRAQLTRQLRLELGHES 125 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455666666666655555443
No 62
>PRK13461 F0F1 ATP synthase subunit B; Provisional
Probab=40.75 E-value=1.4e+02 Score=21.63 Aligned_cols=95 Identities=11% Similarity=0.164 Sum_probs=57.2
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH--------HHHHHHH
Q psy11969 48 IKRLKSIADLLNTDLSQNLQLLSEKARSTTEFIKRLKSIADLLNDNSIEFESQIVAQCDALIKAI--------EDRKKQL 119 (170)
Q Consensus 48 v~~leeA~~~~K~~L~~~l~~L~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~I~~~f~~L~~~L--------~e~e~~l 119 (170)
.-||....++.+..+...+........+........+..+...+..+..........-.....-+ .......
T Consensus 27 ~kpi~~~l~~R~~~I~~~l~~A~~~~~eA~~~~~e~~~~l~~a~~ea~~ii~~a~~~a~~~~~~i~~~A~~ea~~~~~~a 106 (159)
T PRK13461 27 FDKIKAVIDSRQSEIDNKIEKADEDQKKARELKLKNERELKNAKEEGKKIVEEYKSKAENVYEEIVKEAHEEADLIIERA 106 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45899999999999999999988888888887777776666666555444444443333332222 2222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy11969 120 VDAIRLEKESKQRILREQVSGCA 142 (170)
Q Consensus 120 l~~Le~e~~~~l~~l~~~~~~l~ 142 (170)
...++.+.......+...+..+.
T Consensus 107 ~~~i~~e~~~a~~~l~~ei~~lA 129 (159)
T PRK13461 107 KLEAQREKEKAEYEIKNQAVDLA 129 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 23444555555555555544443
No 63
>KOG0993|consensus
Probab=40.50 E-value=2.5e+02 Score=24.43 Aligned_cols=46 Identities=11% Similarity=0.059 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhHHHHHHHHHHHH
Q psy11969 60 TDLSQNLQLLSEKARSTTEFIKR-LKSIADLLNDNSIEFESQIVAQC 105 (170)
Q Consensus 60 ~~L~~~l~~L~~~~~e~~~~~~~-l~~~~~~~~~~~~~~~~~I~~~f 105 (170)
+.+.+.-..+++.+..++..+.. ++...+.+..+.++.+..|....
T Consensus 81 eeVaSlqa~~k~~~~~ye~q~~~~leqertq~qq~~e~~erEv~~l~ 127 (542)
T KOG0993|consen 81 EEVASLQASQKSPNPTYECQMCQNLEQERTQLQQNEEKLEREVKALM 127 (542)
T ss_pred cccchhHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444455544443 55566666666555555544433
No 64
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=40.18 E-value=3.2e+02 Score=25.62 Aligned_cols=35 Identities=17% Similarity=0.284 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11969 100 QIVAQCDALIKAIEDRKKQLVDAIRLEKESKQRIL 134 (170)
Q Consensus 100 ~I~~~f~~L~~~L~e~e~~ll~~Le~e~~~~l~~l 134 (170)
.+......+..-..++...++...+.+-+..++.+
T Consensus 559 ~l~~~~~~~~~~~~~~a~~~l~~a~~~~~~~i~~l 593 (782)
T PRK00409 559 KLQEEEDKLLEEAEKEAQQAIKEAKKEADEIIKEL 593 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444444444444433333333
No 65
>smart00336 BBOX B-Box-type zinc finger.
Probab=40.05 E-value=11 Score=20.49 Aligned_cols=16 Identities=6% Similarity=-0.147 Sum_probs=11.4
Q ss_pred hcccccccCcccccccch
Q psy11969 34 LQLLSEKARSTTEFIKRL 51 (170)
Q Consensus 34 ~~~~~~~~~Hk~H~v~~l 51 (170)
..|... .|++|.+.||
T Consensus 27 ~~C~~~--~H~~H~~~~l 42 (42)
T smart00336 27 RTCDEA--EHRGHTVVLL 42 (42)
T ss_pred cccChh--hcCCCceecC
Confidence 355543 7999999875
No 66
>PRK08475 F0F1 ATP synthase subunit B; Validated
Probab=39.43 E-value=1.5e+02 Score=21.79 Aligned_cols=59 Identities=14% Similarity=0.074 Sum_probs=43.2
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q psy11969 48 IKRLKSIADLLNTDLSQNLQLLSEKARSTTEFIKRLKSIADLLNDNSIEFESQIVAQCD 106 (170)
Q Consensus 48 v~~leeA~~~~K~~L~~~l~~L~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~I~~~f~ 106 (170)
.-||..+.++.+..+...++.......+........+..+......+..........-+
T Consensus 44 ~kPi~~~l~~R~~~I~~~l~~Ae~~~~ea~~~~~e~e~~L~~Ar~eA~~Ii~~A~~eAe 102 (167)
T PRK08475 44 AKPLKNFYKSRINKISKRLEEIQEKLKESKEKKEDALKKLEEAKEKAELIVETAKKEAY 102 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46899999999999999999998888888888777776666666555444444443333
No 67
>KOG0804|consensus
Probab=39.13 E-value=2.7e+02 Score=24.43 Aligned_cols=75 Identities=8% Similarity=0.017 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11969 79 FIKRLKSIADLLNDNSIEFESQIVAQCDALIKAIEDRKKQLVDAIRLEK---ESKQRILREQVSGCACKLQRTTALLQF 154 (170)
Q Consensus 79 ~~~~l~~~~~~~~~~~~~~~~~I~~~f~~L~~~L~e~e~~ll~~Le~e~---~~~l~~l~~~~~~l~~~l~~l~~~i~~ 154 (170)
....++....++..+..+........= ++...|.+....+...++..+ .......+.++..+++++..+...++.
T Consensus 376 ~kk~~e~k~~q~q~k~~k~~kel~~~~-E~n~~l~knq~vw~~kl~~~~e~~~~~~~s~d~~I~dLqEQlrDlmf~le~ 453 (493)
T KOG0804|consen 376 EKKIVERKLQQLQTKLKKCQKELKEER-EENKKLIKNQDVWRGKLKELEEREKEALGSKDEKITDLQEQLRDLMFFLEA 453 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHheehhh
Confidence 333344444444444444433332222 455566666666665554433 334455566677777777666544443
No 68
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=38.17 E-value=1.7e+02 Score=21.89 Aligned_cols=53 Identities=9% Similarity=0.097 Sum_probs=40.5
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q psy11969 48 IKRLKSIADLLNTDLSQNLQLLSEKARSTTEFIKRLKSIADLLNDNSIEFESQ 100 (170)
Q Consensus 48 v~~leeA~~~~K~~L~~~l~~L~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~ 100 (170)
+-||....++.+..+...++.......+........+..+...+..+......
T Consensus 53 ~~PI~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~eye~~L~~Ar~EA~~ii~~ 105 (181)
T PRK13454 53 LPRIGAVLAERQGTITNDLAAAEELKQKAVEAEKAYNKALADARAEAQRIVAE 105 (181)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45899999999999999999988888888888777777666666555443333
No 69
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=37.43 E-value=2e+02 Score=22.55 Aligned_cols=52 Identities=10% Similarity=0.103 Sum_probs=37.6
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q psy11969 48 IKRLKSIADLLNTDLSQNLQLLSEKARSTTEFIKRLKSIADLLNDNSIEFES 99 (170)
Q Consensus 48 v~~leeA~~~~K~~L~~~l~~L~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~ 99 (170)
.-||....++.+..+...+........+........+..+......+.....
T Consensus 27 ~kPi~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~i~~ 78 (246)
T TIGR03321 27 YRPILDAMDAREKKIAGELADADTKKREAEQERREYEEKNEELDQQREVLLT 78 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3578888889999999999888888877777777766666655544443333
No 70
>PHA03187 UL14 tegument protein; Provisional
Probab=37.38 E-value=2.3e+02 Score=23.20 Aligned_cols=36 Identities=11% Similarity=0.122 Sum_probs=21.9
Q ss_pred cccccchHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH
Q psy11969 45 TEFIKRLKSIADLLNTDLSQN--LQLLSEKARSTTEFI 80 (170)
Q Consensus 45 ~H~v~~leeA~~~~K~~L~~~--l~~L~~~~~e~~~~~ 80 (170)
-|.+.+.++|..+++..|+.. +..++.+...++..+
T Consensus 44 V~AFTSAKeA~~dl~rqLRS~aRveaVeQKar~Iq~rV 81 (322)
T PHA03187 44 VRAFTSAKEASLDLDRYMQAHSRVGRVEQNARALAQRV 81 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677788888888888643 444444444444433
No 71
>KOG0250|consensus
Probab=36.56 E-value=4.2e+02 Score=25.91 Aligned_cols=26 Identities=19% Similarity=0.250 Sum_probs=15.1
Q ss_pred cccccchHHHHHHHHHHHHHHHHHHH
Q psy11969 45 TEFIKRLKSIADLLNTDLSQNLQLLS 70 (170)
Q Consensus 45 ~H~v~~leeA~~~~K~~L~~~l~~L~ 70 (170)
.|.+.-.++....+.+++........
T Consensus 287 ~~~i~~~qek~~~l~~ki~~~~~k~~ 312 (1074)
T KOG0250|consen 287 EEEIKKKQEKVDTLQEKIEEKQGKIE 312 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566677776666666654444433
No 72
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=36.28 E-value=1e+02 Score=18.76 Aligned_cols=44 Identities=14% Similarity=0.212 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q psy11969 60 TDLSQNLQLLSEKARSTTEFIKRLKSIADLLNDNSIEFESQIVA 103 (170)
Q Consensus 60 ~~L~~~l~~L~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~I~~ 103 (170)
.+|...++.|..+...+...+..+.......+..+..+..+|..
T Consensus 6 d~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~EAaRAN~RlDN 49 (56)
T PF04728_consen 6 DQLSSDVQTLNSKVDQLSSDVNALRADVQAAKEEAARANQRLDN 49 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45666666666666666666666666565566555555555544
No 73
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=36.07 E-value=1e+02 Score=18.69 Aligned_cols=43 Identities=19% Similarity=0.085 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q psy11969 53 SIADLLNTDLSQNLQLLSEKARSTTEFIKRLKSIADLLNDNSI 95 (170)
Q Consensus 53 eA~~~~K~~L~~~l~~L~~~~~e~~~~~~~l~~~~~~~~~~~~ 95 (170)
.|+..++..-...+..|......+......+...+..+.....
T Consensus 15 ~AAr~~R~RKk~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~ 57 (64)
T PF00170_consen 15 EAARRSRQRKKQYIEELEEKVEELESENEELKKELEQLKKEIQ 57 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666666666666666666655555555555444444444333
No 74
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=35.90 E-value=1.9e+02 Score=21.78 Aligned_cols=66 Identities=14% Similarity=0.234 Sum_probs=28.5
Q ss_pred HHHHHHHHhhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
Q psy11969 83 LKSIADLLNDNSI-EFESQIVAQCDALIKAIEDRKKQLVDAIRLEKES--KQRILREQVSGCACKLQRT 148 (170)
Q Consensus 83 l~~~~~~~~~~~~-~~~~~I~~~f~~L~~~L~e~e~~ll~~Le~e~~~--~l~~l~~~~~~l~~~l~~l 148 (170)
+....+....++. .....+...|.+|.+.++.-.++|-..|...... .++.+....+.+..+...+
T Consensus 88 Lr~iv~~tsancs~QVqqeL~~tf~rL~~~Vd~~~~eL~~eI~~L~~~i~~le~~~~~~k~LrnKa~~L 156 (171)
T PF04799_consen 88 LRLIVSFTSANCSHQVQQELSSTFARLCQQVDQTKNELEDEIKQLEKEIQRLEEIQSKSKTLRNKANWL 156 (171)
T ss_dssp ----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444443 5677888899999999999988888888755443 3333333344444333333
No 75
>smart00806 AIP3 Actin interacting protein 3. Aip3p/Bud6p is a regulator of cell and cytoskeletal polarity in Saccharomyces cerevisiae that was previously identified as an actin-interacting protein. Actin-interacting protein 3 (Aip3p) localizes at the cell cortex where cytoskeleton assembly must be achieved to execute polarized cell growth, and deletion of AIP3 causes gross defects in cell and cytoskeletal polarity. Aip3p localization is mediated by the secretory pathway, mutations in early- or late-acting components of the secretory apparatus lead to Aip3p mislocalization PUBMED:10679021.
Probab=34.78 E-value=3.1e+02 Score=23.83 Aligned_cols=33 Identities=12% Similarity=0.174 Sum_probs=17.9
Q ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11969 46 EFIKRLKSIADLLNTDLSQNLQLLSEKARSTTE 78 (170)
Q Consensus 46 H~v~~leeA~~~~K~~L~~~l~~L~~~~~e~~~ 78 (170)
|+...+...+..++..+...+..+..+...++.
T Consensus 162 rdLavlRQ~~~~~~~~~~~sm~~i~~k~~~~k~ 194 (426)
T smart00806 162 RELAVLRQTHNSFFTEIKESIKDILEKIDKFKS 194 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555556666655555554444
No 76
>KOG0161|consensus
Probab=34.10 E-value=5.8e+02 Score=26.85 Aligned_cols=16 Identities=13% Similarity=0.059 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHH
Q psy11969 133 ILREQVSGCACKLQRT 148 (170)
Q Consensus 133 ~l~~~~~~l~~~l~~l 148 (170)
.+......++..+..+
T Consensus 1010 ~l~k~~~kle~~l~~l 1025 (1930)
T KOG0161|consen 1010 SLNKAKAKLEQQLDDL 1025 (1930)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444433
No 77
>TIGR01144 ATP_synt_b ATP synthase, F0 subunit b. This model describes the F1/F0 ATP synthase b subunit in bacteria only. Scoring just below the trusted cutoff are the N-terminal domains of Mycobacterial b/delta fusion proteins and a subunit from an archaeon, Methanosarcina barkeri, in which the ATP synthase homolog differs in architecture and is not experimentally confirmed. This model helps resolve b from the related b' subunit. Within the family is an example from a sodium-translocating rather than proton-translocating ATP synthase.
Probab=33.83 E-value=1.7e+02 Score=20.68 Aligned_cols=52 Identities=12% Similarity=0.093 Sum_probs=38.8
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q psy11969 48 IKRLKSIADLLNTDLSQNLQLLSEKARSTTEFIKRLKSIADLLNDNSIEFES 99 (170)
Q Consensus 48 v~~leeA~~~~K~~L~~~l~~L~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~ 99 (170)
+-|+....++.+..+...+........+...........+......+.....
T Consensus 17 ~~pi~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~~~~l~~A~~ea~~i~~ 68 (147)
T TIGR01144 17 WPPLAKAIETRQKKIADGLASAERAKKEAALAQKKAQVILKEAKDEAQEIIE 68 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3588888899999999999988888888887777776666666655444333
No 78
>PHA03185 UL14 tegument protein; Provisional
Probab=33.81 E-value=2.2e+02 Score=21.99 Aligned_cols=21 Identities=14% Similarity=0.048 Sum_probs=15.5
Q ss_pred ccccchHHHHHHHHHHHHHHH
Q psy11969 46 EFIKRLKSIADLLNTDLSQNL 66 (170)
Q Consensus 46 H~v~~leeA~~~~K~~L~~~l 66 (170)
|-+.+-++|..+++.+|....
T Consensus 45 ~AFTsAK~A~~dl~aqLrS~a 65 (214)
T PHA03185 45 GAFMAAKAAHRELEARLKSRA 65 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 456777888888888887554
No 79
>PF08112 ATP-synt_E_2: ATP synthase epsilon subunit; InterPro: IPR012508 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. A-ATPases (or A1A0-ATPase) (3.6.3.14 from EC) are found exclusively in Archaea and display a close resemblance in structure and subunit composition with V-ATPases, although their function in both ATP synthesis and ATP hydrolysis is closer to that of F-ATPases []. A-ATPases are composed of two linked complexes: the A1 complex consisting of seven subunits contains the catalytic core that synthesizes/hydrolyses ATP, while the A0 complex consisting of at least two subunits forms the membrane-spanning pore []. The rotary motor in A-ATPases is composed of only two subunits, the stator subunit I and the rotor subunit C []. A-ATPases may have arisen as an adaptation to the different cellular needs and the more extreme environmental conditions faced by Archaeal species. The epsilon subunit is the smallest (7 kDa) of those found in the A1 complex. Unlike the A, B and C subunits, the epsilon subunit does not have a homologous counterpart in F- or V-ATPases []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0015986 ATP synthesis coupled proton transport, 0033178 proton-transporting two-sector ATPase complex, catalytic domain
Probab=33.77 E-value=1.1e+02 Score=18.36 Aligned_cols=42 Identities=17% Similarity=0.294 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11969 99 SQIVAQCDALIKAIEDRKKQLVDAIRLEKESKQRILREQVSG 140 (170)
Q Consensus 99 ~~I~~~f~~L~~~L~e~e~~ll~~Le~e~~~~l~~l~~~~~~ 140 (170)
..|......|..-|++...++++.|..+.+..++.-...++.
T Consensus 7 ~~~d~yI~~Lk~kLd~Kk~Eil~~ln~EY~kiLk~r~~~lEe 48 (56)
T PF08112_consen 7 STIDKYISILKSKLDEKKSEILSNLNMEYEKILKQRRKELEE 48 (56)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556667777888888888888887776665544444433
No 80
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=33.33 E-value=1.4e+02 Score=19.40 Aligned_cols=29 Identities=14% Similarity=0.039 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11969 127 KESKQRILREQVSGCACKLQRTTALLQFC 155 (170)
Q Consensus 127 ~~~~l~~l~~~~~~l~~~l~~l~~~i~~l 155 (170)
...++..+...+..+...+..++.....+
T Consensus 62 y~~KL~~ikkrm~~l~~~l~~lk~R~~~L 90 (92)
T PF14712_consen 62 YVKKLVNIKKRMSNLHERLQKLKKRADKL 90 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 56667777777777777777666655444
No 81
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=33.04 E-value=3.2e+02 Score=23.48 Aligned_cols=40 Identities=8% Similarity=-0.089 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11969 117 KQLVDAIRLEKESKQRILREQVSGCACKLQRTTALLQFCI 156 (170)
Q Consensus 117 ~~ll~~Le~e~~~~l~~l~~~~~~l~~~l~~l~~~i~~l~ 156 (170)
..+...|...++...-...+....+.+-++.+...|..++
T Consensus 279 ~~LKqeLa~~EEK~~Yqs~eRaRdi~E~~Es~qtRisklE 318 (395)
T PF10267_consen 279 YNLKQELASMEEKMAYQSYERARDIWEVMESCQTRISKLE 318 (395)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444444444444444444
No 82
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=32.15 E-value=3.9e+02 Score=24.25 Aligned_cols=30 Identities=17% Similarity=0.048 Sum_probs=12.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11969 50 RLKSIADLLNTDLSQNLQLLSEKARSTTEF 79 (170)
Q Consensus 50 ~leeA~~~~K~~L~~~l~~L~~~~~e~~~~ 79 (170)
|+.+.+..++..........+.+..+++..
T Consensus 423 pL~~e~r~lk~~~~~~~~e~~~~~~~ik~~ 452 (594)
T PF05667_consen 423 PLIEEYRRLKEKASNRESESKQKLQEIKEL 452 (594)
T ss_pred HHHHHHHHHHHHHhhcchHHHHHHHHHHHH
Confidence 444444444444443333333333333333
No 83
>KOG0837|consensus
Probab=31.81 E-value=2.8e+02 Score=22.47 Aligned_cols=25 Identities=12% Similarity=0.372 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11969 100 QIVAQCDALIKAIEDRKKQLVDAIR 124 (170)
Q Consensus 100 ~I~~~f~~L~~~L~e~e~~ll~~Le 124 (170)
.+......|...+.+..+.+++.+.
T Consensus 245 ~L~~~l~~l~~~v~e~k~~V~~hi~ 269 (279)
T KOG0837|consen 245 DLASELSKLKEQVAELKQKVMEHIH 269 (279)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4555666677777777777666654
No 84
>smart00338 BRLZ basic region leucin zipper.
Probab=31.51 E-value=1.2e+02 Score=18.32 Aligned_cols=43 Identities=16% Similarity=0.108 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q psy11969 52 KSIADLLNTDLSQNLQLLSEKARSTTEFIKRLKSIADLLNDNS 94 (170)
Q Consensus 52 eeA~~~~K~~L~~~l~~L~~~~~e~~~~~~~l~~~~~~~~~~~ 94 (170)
.+|+..++.+=...+..|..+...+......+...+..+....
T Consensus 14 R~aA~~~R~rKk~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~ 56 (65)
T smart00338 14 REAARRSRERKKAEIEELERKVEQLEAENERLKKEIERLRREL 56 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566666666666666666666666665555555555544433
No 85
>PRK11637 AmiB activator; Provisional
Probab=31.44 E-value=3.3e+02 Score=23.20 Aligned_cols=10 Identities=30% Similarity=0.531 Sum_probs=5.4
Q ss_pred CCCchHHHHH
Q psy11969 12 TPRPSAYKAA 21 (170)
Q Consensus 12 ~~~~~~~~~~ 21 (170)
.-+|.+..+.
T Consensus 19 ~~~~~~~~~l 28 (428)
T PRK11637 19 AIRPILYASV 28 (428)
T ss_pred hhhhHHHHHH
Confidence 4467665543
No 86
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=31.42 E-value=2.2e+02 Score=21.11 Aligned_cols=27 Identities=30% Similarity=0.191 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy11969 133 ILREQVSGCACKLQRTTALLQFCIEAL 159 (170)
Q Consensus 133 ~l~~~~~~l~~~l~~l~~~i~~l~e~l 159 (170)
.+...+.++......+...+...+..+
T Consensus 162 ~~~~~~~~~~~~~~~l~~~~~~~~~l~ 188 (191)
T PF04156_consen 162 ELRSQLERLQENLQQLEEKIQELQELL 188 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444555555555555554443
No 87
>PRK09039 hypothetical protein; Validated
Probab=30.30 E-value=3.2e+02 Score=22.74 Aligned_cols=9 Identities=22% Similarity=0.106 Sum_probs=4.7
Q ss_pred CCCchHHHH
Q psy11969 12 TPRPSAYKA 20 (170)
Q Consensus 12 ~~~~~~~~~ 20 (170)
..-|-|-.+
T Consensus 14 ~~wpg~vd~ 22 (343)
T PRK09039 14 DYWPGFVDA 22 (343)
T ss_pred CCCchHHHH
Confidence 345666544
No 88
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=30.22 E-value=3.1e+02 Score=22.58 Aligned_cols=25 Identities=8% Similarity=0.040 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q psy11969 135 REQVSGCACKLQRTTALLQFCIEAL 159 (170)
Q Consensus 135 ~~~~~~l~~~l~~l~~~i~~l~e~l 159 (170)
...++........+..-|..++...
T Consensus 238 ~~~I~~~~~~k~e~~~~I~~ae~~~ 262 (312)
T smart00787 238 ESKIEDLTNKKSELNTEIAEAEKKL 262 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333344444444444433
No 89
>KOG4001|consensus
Probab=29.87 E-value=2.7e+02 Score=21.75 Aligned_cols=25 Identities=12% Similarity=0.170 Sum_probs=13.0
Q ss_pred CCchHHHHHHHHHHHHHHHHHhccccc
Q psy11969 13 PRPSAYKAALVFKLLTDLSQNLQLLSE 39 (170)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 (170)
|+|+-.-.--|-.|..+.| .+|.+.
T Consensus 123 P~rreLYsQcFDElIRqvs--~scveR 147 (259)
T KOG4001|consen 123 PIRRELYSQCFDELIRQVS--VSCVER 147 (259)
T ss_pred CCcHHHHHHHHHHHHHHcc--hhHHhc
Confidence 4455444444555666555 456644
No 90
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=29.69 E-value=3.9e+02 Score=23.54 Aligned_cols=28 Identities=18% Similarity=0.296 Sum_probs=16.1
Q ss_pred hHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Q psy11969 93 NSIEFESQIVAQCDALIK-AIEDRKKQLV 120 (170)
Q Consensus 93 ~~~~~~~~I~~~f~~L~~-~L~e~e~~ll 120 (170)
.....+..+...|+.|.. +|++..+.+.
T Consensus 103 ~l~~~~~~L~~~F~~LA~~ile~k~~~f~ 131 (475)
T PRK10361 103 QMINSEQRLSEQFENLANRIFEHSNRRVD 131 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566777778877744 3444444433
No 91
>KOG4302|consensus
Probab=29.68 E-value=4.5e+02 Score=24.24 Aligned_cols=57 Identities=16% Similarity=0.110 Sum_probs=28.2
Q ss_pred HHHHHHHHhcccccccCccc---ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11969 26 LLTDLSQNLQLLSEKARSTT---EFIKRLKSIADLLNTDLSQNLQLLSEKARSTTEFIKR 82 (170)
Q Consensus 26 ~~~~~~~~~~~~~~~~~Hk~---H~v~~leeA~~~~K~~L~~~l~~L~~~~~e~~~~~~~ 82 (170)
.+++|+.-..|+.+...|.. -.-.||.+-+......|.........+..++...+..
T Consensus 73 ~eael~~l~s~l~~~~~~~~~~~k~e~tLke~l~~l~~~le~lr~qk~eR~~ef~el~~q 132 (660)
T KOG4302|consen 73 IEAELNDLCSALGEPSIIGEISDKIEGTLKEQLESLKPYLEGLRKQKDERRAEFKELYHQ 132 (660)
T ss_pred HHHHHHHHHHHhCCcccccccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555566655555555 3334666555555544444444444444444443333
No 92
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=29.26 E-value=4.4e+02 Score=23.94 Aligned_cols=24 Identities=17% Similarity=0.148 Sum_probs=11.6
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHH
Q psy11969 48 IKRLKSIADLLNTDLSQNLQLLSE 71 (170)
Q Consensus 48 v~~leeA~~~~K~~L~~~l~~L~~ 71 (170)
+..|..-|+.++..|-.....++.
T Consensus 410 l~~L~~qWe~~R~pL~~e~r~lk~ 433 (594)
T PF05667_consen 410 LVELAQQWEKHRAPLIEEYRRLKE 433 (594)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHH
Confidence 444455555555544444444443
No 93
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=29.12 E-value=1.8e+02 Score=19.40 Aligned_cols=36 Identities=11% Similarity=0.220 Sum_probs=18.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11969 92 DNSIEFESQIVAQCDALIKAIEDRKKQLVDAIRLEK 127 (170)
Q Consensus 92 ~~~~~~~~~I~~~f~~L~~~L~e~e~~ll~~Le~e~ 127 (170)
.........|...=..|..-|+.........|....
T Consensus 46 ~~f~~l~~~L~~~e~~ll~~l~~~~~~~~~~l~~q~ 81 (127)
T smart00502 46 AAFDELRNALNKRKKQLLEDLEEQKENKLKVLEQQL 81 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444455555566666665555555555433
No 94
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=28.52 E-value=3.5e+02 Score=22.61 Aligned_cols=19 Identities=11% Similarity=-0.099 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q psy11969 141 CACKLQRTTALLQFCIEAL 159 (170)
Q Consensus 141 l~~~l~~l~~~i~~l~e~l 159 (170)
++..+.+....+.+++..+
T Consensus 73 L~~~Ik~r~~~l~DmEa~L 91 (330)
T PF07851_consen 73 LEEDIKERRCQLFDMEAFL 91 (330)
T ss_pred HHHHHHHHHhhHHHHHhhC
Confidence 3333334444444444444
No 95
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=28.02 E-value=4.7e+02 Score=23.95 Aligned_cols=94 Identities=15% Similarity=0.170 Sum_probs=55.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11969 51 LKSIADLLNTDLSQNLQLLSEKARSTTEFIKRLKSIADLLNDNSIEFESQIVAQCDALIKAIEDRKKQLVDAIRLEKESK 130 (170)
Q Consensus 51 leeA~~~~K~~L~~~l~~L~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~I~~~f~~L~~~L~e~e~~ll~~Le~e~~~~ 130 (170)
..+.....+.+|...+..|+..+..+...+......... .+..+....+++... ..+..||++....-...
T Consensus 73 ~~e~~~~~r~~L~~everLraei~~l~~~I~~~e~e~~~-------~e~~~~q~~~~~~~~--~~k~~LL~Ay~q~c~~~ 143 (632)
T PF14817_consen 73 SRENEARRRRELEKEVERLRAEIQELDKEIESREREVSR-------QEASREQMLDKISDS--RHKQLLLEAYSQQCEEQ 143 (632)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH
Confidence 344444466788888888877766666554443332222 222222222222221 34566778888777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy11969 131 QRILREQVSGCACKLQRTTALLQ 153 (170)
Q Consensus 131 l~~l~~~~~~l~~~l~~l~~~i~ 153 (170)
...+.+....+...++.+..+-.
T Consensus 144 ~~~l~e~~~rl~~~~~~~q~~~R 166 (632)
T PF14817_consen 144 RRILREYTKRLQGQVEQLQDIQR 166 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 78888888887777777665543
No 96
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=27.89 E-value=4.4e+02 Score=23.53 Aligned_cols=25 Identities=8% Similarity=0.202 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11969 130 KQRILREQVSGCACKLQRTTALLQF 154 (170)
Q Consensus 130 ~l~~l~~~~~~l~~~l~~l~~~i~~ 154 (170)
.+..+.+.++.+-.++..++..+..
T Consensus 413 ~l~~v~eKVd~LpqqI~~vs~Kc~~ 437 (531)
T PF15450_consen 413 HLKEVQEKVDSLPQQIEEVSDKCDL 437 (531)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3334444444444444444443333
No 97
>PF12126 DUF3583: Protein of unknown function (DUF3583); InterPro: IPR021978 This domain is found in eukaryotes, and is typically between 302 and 338 amino acids in length. It is found in association with PF00097 from PFAM and PF00643 from PFAM. Most members are promyelocytic leukemia proteins, and this family lies towards the C terminus.
Probab=27.58 E-value=3.5e+02 Score=22.32 Aligned_cols=34 Identities=18% Similarity=0.195 Sum_probs=16.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11969 92 DNSIEFESQIVAQCDALIKAIEDRKKQLVDAIRL 125 (170)
Q Consensus 92 ~~~~~~~~~I~~~f~~L~~~L~e~e~~ll~~Le~ 125 (170)
..+...-..|.+.=..|-..++.+...--+.|..
T Consensus 42 ~rVrq~V~hVqaqEreLLe~v~~rYqR~y~ema~ 75 (324)
T PF12126_consen 42 ARVRQVVAHVQAQERELLEAVEARYQRDYEEMAG 75 (324)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555555555555555544444443
No 98
>PF00435 Spectrin: Spectrin repeat; InterPro: IPR002017 Spectrin repeats [] are found in several proteins involved in cytoskeletal structure. These include spectrin alpha and beta subunits [, ], alpha-actinin [] and dystrophin. The spectrin repeat forms a three-helix bundle. The second helix is interrupted by proline in some sequences. The repeats are defined by a characteristic tryptophan (W) residue at position 17 in helix A and a leucine (L) at 2 residues from the carboxyl end of helix C.; GO: 0005515 protein binding; PDB: 1HCI_A 1QUU_A 3FB2_B 1S35_A 1U5P_A 1U4Q_A 1CUN_B 1YDI_B 3EDV_A 1AJ3_A ....
Probab=26.85 E-value=1.7e+02 Score=18.36 Aligned_cols=22 Identities=23% Similarity=0.483 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy11969 98 ESQIVAQCDALIKAIEDRKKQL 119 (170)
Q Consensus 98 ~~~I~~~f~~L~~~L~e~e~~l 119 (170)
-..|...|..|...+.++...|
T Consensus 82 ~~~l~~~w~~l~~~~~~r~~~L 103 (105)
T PF00435_consen 82 LEELNQRWEALCELVEERRQKL 103 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHC
Confidence 3344555555555555554443
No 99
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=26.42 E-value=2.2e+02 Score=19.50 Aligned_cols=26 Identities=12% Similarity=0.089 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11969 98 ESQIVAQCDALIKAIEDRKKQLVDAI 123 (170)
Q Consensus 98 ~~~I~~~f~~L~~~L~e~e~~ll~~L 123 (170)
...+...+.....||.+-......++
T Consensus 41 e~~l~~~~~~f~~flken~~k~~rA~ 66 (126)
T PF13863_consen 41 EQELEEDVIKFDKFLKENEAKRERAE 66 (126)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 34444444455555555554444443
No 100
>PF05739 SNARE: SNARE domain; InterPro: IPR000727 The process of vesicular fusion with target membranes depends on a set of SNAREs (SNAP-Receptors), which are associated with the fusing membranes [, ]. Target SNAREs (t-SNAREs) are localised on the target membrane and belong to two different families, the syntaxin-like family and the SNAP-25 like family. One member of each family, together with a v-SNARE localised on the vesicular membrane, are required for fusion. The Syntaxins are type-I transmembrane proteins that contain several regions with coiled-coil propensity in their cytosolic part, the SNARE motif. SNAP-25 (IPR000928 from INTERPRO) is a protein consisting of two coiled-coil regions, which is associated with the membrane by lipid anchors. SNARE motifs assemble into parallel four helix bundles stabilised by the burial of these hydrophobic helix faces in the bundle core. Monomeric SNARE motifs are disordered so this assembly reaction is accompanied by a dramatic increase in alpha-helical secondary structure []. The parallel arrangement of SNARE motifs within complexes bring the transmembrane anchors, and the two membranes, into close proximity. Recently, it was shown that the two coiled-coil regions of SNAP-25 and one of the coiled-coil regions of the syntaxins are related []. This domain is found in both Syntaxin and SNAP-25 families as well as in other proteins.; GO: 0005515 protein binding; PDB: 1URQ_B 3RL0_R 1HVV_B 1SFC_B 1N7S_B 3IPD_B 3C98_B 3HD7_F 3RK2_B 1KIL_B ....
Probab=26.03 E-value=1.5e+02 Score=17.50 Aligned_cols=53 Identities=21% Similarity=0.253 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q psy11969 61 DLSQNLQLLSEKARSTTEFIKRLKSIADLLNDNSIEFESQIVAQCDALIKAIE 113 (170)
Q Consensus 61 ~L~~~l~~L~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~I~~~f~~L~~~L~ 113 (170)
.|...+..+..-..++...+..-...+..+..++..+...+...-..|..++.
T Consensus 8 ~l~~~i~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l~~~~~~l~ka~~ 60 (63)
T PF05739_consen 8 ELEQSIQELKQMFQDIGEEVEEQNEMLDRIEDNVDRANENLKKGNKKLKKALK 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555555555666666666666666666666666555544
No 101
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=25.82 E-value=5.2e+02 Score=23.66 Aligned_cols=31 Identities=16% Similarity=0.219 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q psy11969 64 QNLQLLSEKARSTTEFIKRLKSIADLLNDNS 94 (170)
Q Consensus 64 ~~l~~L~~~~~e~~~~~~~l~~~~~~~~~~~ 94 (170)
..+..+...++.++..+..++..+..++...
T Consensus 429 ~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l 459 (652)
T COG2433 429 ETVERLEEENSELKRELEELKREIEKLESEL 459 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333
No 102
>KOG3850|consensus
Probab=25.69 E-value=4.3e+02 Score=22.73 Aligned_cols=81 Identities=9% Similarity=0.218 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11969 73 ARSTTEFIKRLKSIADLLNDNSIEFESQIVAQCDALIKAIEDRKKQLVDAIRLEKESKQRILREQVSGCACKLQRTTALL 152 (170)
Q Consensus 73 ~~e~~~~~~~l~~~~~~~~~~~~~~~~~I~~~f~~L~~~L~e~e~~ll~~Le~e~~~~l~~l~~~~~~l~~~l~~l~~~i 152 (170)
.+.+...+...++....+.++.+.++.++..++.-+.+.|+++.-.. +.++++-....+--...+.++.+++..+.+.+
T Consensus 262 l~aileeL~eIk~~q~~Leesye~Lke~~krdy~fi~etLQEERyR~-erLEEqLNdlteLqQnEi~nLKqElasmeerv 340 (455)
T KOG3850|consen 262 LDAILEELREIKETQALLEESYERLKEQIKRDYKFIAETLQEERYRY-ERLEEQLNDLTELQQNEIANLKQELASMEERV 340 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HH
Q psy11969 153 QF 154 (170)
Q Consensus 153 ~~ 154 (170)
++
T Consensus 341 aY 342 (455)
T KOG3850|consen 341 AY 342 (455)
T ss_pred HH
No 103
>COG1561 Uncharacterized stress-induced protein [Function unknown]
Probab=25.54 E-value=3.8e+02 Score=21.99 Aligned_cols=104 Identities=16% Similarity=0.143 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11969 60 TDLSQNLQLLSE-KARSTTEFIKRLKSIADLLNDNSIEFESQIVAQCDALIKAIEDRKKQLVDAIRLEKESKQRILREQV 138 (170)
Q Consensus 60 ~~L~~~l~~L~~-~~~e~~~~~~~l~~~~~~~~~~~~~~~~~I~~~f~~L~~~L~e~e~~ll~~Le~e~~~~l~~l~~~~ 138 (170)
..+...+..+.. +..+-......+...++.++......+..........+.-+..+-......++...=...-.+-...
T Consensus 135 ~al~~AL~~l~~~R~~EG~~L~~~l~~~L~~ie~~v~~v~~~~P~~~~~~~~~l~~ri~~~~~~~d~~rl~qE~al~a~K 214 (290)
T COG1561 135 AALEEALDDLIEMREREGAALKADLLQRLDAIEELVEKVESLMPEILEWYRERLVARLNEAQDQLDEDRLEQEVALLAQK 214 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHH
Confidence 334444444443 3445555555566666666665555554444433333333333333333444433333333344455
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccC
Q psy11969 139 SGCACKLQRTTALLQFCIEALKETD 163 (170)
Q Consensus 139 ~~l~~~l~~l~~~i~~l~e~l~~~~ 163 (170)
..+.+++.+|+.-+......+..+.
T Consensus 215 ~DI~EEldRL~sHv~~~~~iL~~~g 239 (290)
T COG1561 215 ADIAEELDRLKSHVKEFRNILEKGG 239 (290)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhcCC
Confidence 5566666666666666655554333
No 104
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=25.45 E-value=4.6e+02 Score=22.97 Aligned_cols=31 Identities=23% Similarity=0.367 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy11969 61 DLSQNLQLLSEKARSTTEFIKRLKSIADLLN 91 (170)
Q Consensus 61 ~L~~~l~~L~~~~~e~~~~~~~l~~~~~~~~ 91 (170)
.|+..+..++.....++..+..++..+..+.
T Consensus 75 ~l~~~l~~l~~~~~~~~~~~~~~~~~~~~l~ 105 (525)
T TIGR02231 75 ELRKQIRELEAELRDLEDRGDALKALAKFLE 105 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444445555444455554444444444443
No 105
>KOG3863|consensus
Probab=25.22 E-value=3.8e+02 Score=24.36 Aligned_cols=60 Identities=10% Similarity=0.053 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q psy11969 54 IADLLNTDLSQNLQLLSEKARSTTEFIKRLKSIADLLNDNSIEFESQIVAQCDALIKAIE 113 (170)
Q Consensus 54 A~~~~K~~L~~~l~~L~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~I~~~f~~L~~~L~ 113 (170)
|++.++.+--..|..|......+++-+.++......+.......+.++..-+....+.|.
T Consensus 501 AAQnCRKRKLd~I~nLE~ev~~l~~eKeqLl~Er~~~d~~L~~~kqqls~L~~~Vf~~lr 560 (604)
T KOG3863|consen 501 AAQNCRKRKLDCILNLEDEVEKLQKEKEQLLRERDELDSTLGVMKQQLSELYQEVFQQLR 560 (604)
T ss_pred hccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 556664444455555555555555555555544444444444455454444444444333
No 106
>KOG0774|consensus
Probab=25.12 E-value=3.8e+02 Score=21.83 Aligned_cols=79 Identities=9% Similarity=0.058 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11969 56 DLLNTDLSQNLQLLSEKARSTTEFIKRLKSIADLLNDNSIEFESQIVAQCDALIKAIEDRKKQLVDAIRLEKESKQRIL 134 (170)
Q Consensus 56 ~~~K~~L~~~l~~L~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~I~~~f~~L~~~L~e~e~~ll~~Le~e~~~~l~~l 134 (170)
.+|+.+|.+.........+..+.+-.+...-...+-......+--...+|+.+...+..+.....-.|..+.-.+.-.|
T Consensus 103 sdYR~kL~qiR~iy~~ElekyeqaCneftthV~nlL~eQsr~RPi~~ke~e~m~~~i~~kF~~iq~~lkqstce~vmiL 181 (334)
T KOG0774|consen 103 SDYRAKLLQIRQIYHNELEKYEQACNEFTTHVMNLLREQSRTRPIMPKEIERMVQIISKKFSHIQMQLKQSTCEAVMIL 181 (334)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677777666665555555555544443332222222222222233445666666666665555555554444444333
No 107
>KOG3584|consensus
Probab=25.07 E-value=1.8e+02 Score=23.92 Aligned_cols=35 Identities=20% Similarity=0.217 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11969 53 SIADLLNTDLSQNLQLLSEKARSTTEFIKRLKSIA 87 (170)
Q Consensus 53 eA~~~~K~~L~~~l~~L~~~~~e~~~~~~~l~~~~ 87 (170)
|+..+..-+|.+.....++=+.+-++.+.+++...
T Consensus 287 e~trKRevRLmKNREAARECRRKKKEYVKCLENRV 321 (348)
T KOG3584|consen 287 EATRKREVRLMKNREAARECRRKKKEYVKCLENRV 321 (348)
T ss_pred hhhhHHHHHHHhhHHHHHHHHHhHhHHHHHHHhHH
Confidence 33333333444444333333333333333444333
No 108
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=24.55 E-value=3.2e+02 Score=23.04 Aligned_cols=16 Identities=13% Similarity=0.275 Sum_probs=0.0
Q ss_pred CcccccccchHHHHHH
Q psy11969 42 RSTTEFIKRLKSIADL 57 (170)
Q Consensus 42 ~Hk~H~v~~leeA~~~ 57 (170)
+++-+.-..+.|..+.
T Consensus 51 ~~Kk~~~~qLrE~~et 66 (370)
T PF02994_consen 51 DFKKDFKNQLREQDET 66 (370)
T ss_dssp ----------------
T ss_pred HhhhhhHHHHHHhhhh
Confidence 4555555555555433
No 109
>COG0711 AtpF F0F1-type ATP synthase, subunit b [Energy production and conversion]
Probab=24.12 E-value=2.9e+02 Score=20.19 Aligned_cols=116 Identities=15% Similarity=0.134 Sum_probs=69.6
Q ss_pred hHHHHHHHHHHHHHHHHHhcccccccCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q psy11969 16 SAYKAALVFKLLTDLSQNLQLLSEKARSTTEFIKRLKSIADLLNTDLSQNLQLLSEKARSTTEFIKRLKSIADLLNDNSI 95 (170)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Hk~H~v~~leeA~~~~K~~L~~~l~~L~~~~~e~~~~~~~l~~~~~~~~~~~~ 95 (170)
.+|...-|+.++.-++.-+ +-|+..+.++....+...+...+....+........+..+...+..+.
T Consensus 9 ~~~~~i~F~ill~ll~~~~-------------~~pi~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~~~~~~l~~Ar~~a~ 75 (161)
T COG0711 9 ILWQLIAFVILLWLLKKFV-------------WKPILKALDERQAKIADDLAEAERLKEEAQALLAEYEQELEEAREQAS 75 (161)
T ss_pred HHHHHHHHHHHHHHHHHHh-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777777777776665432 469999999999999999999988888877777766655555443332
Q ss_pred H----HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11969 96 E----FESQIVAQCDALI----KAIEDRKKQLVDAIRLEKESKQRILREQVSGCACK 144 (170)
Q Consensus 96 ~----~~~~I~~~f~~L~----~~L~e~e~~ll~~Le~e~~~~l~~l~~~~~~l~~~ 144 (170)
. ++.......+... ..+.......-..|+.+.......+...+..+...
T Consensus 76 ~Ii~~A~~~a~~~~~e~~~~a~~e~~r~~~~a~~~I~~e~~~a~~~l~~~~~~la~~ 132 (161)
T COG0711 76 EIIEQAKKEAEQIAEEIKAEAEEELERIKEAAEAEIEAEKERALEELRAEVAELAVA 132 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 2222222222222 22333333333445555555555555555544433
No 110
>PF10829 DUF2554: Protein of unknown function (DUF2554); InterPro: IPR020117 This entry contains proteins with no known function.
Probab=23.88 E-value=39 Score=21.59 Aligned_cols=18 Identities=6% Similarity=-0.071 Sum_probs=14.9
Q ss_pred CcccccccchHHHHHHHH
Q psy11969 42 RSTTEFIKRLKSIADLLN 59 (170)
Q Consensus 42 ~Hk~H~v~~leeA~~~~K 59 (170)
.|+||..+||..+-..++
T Consensus 23 ~~~GHe~~~vq~~d~qLr 40 (76)
T PF10829_consen 23 GHQGHEYLWVQNADHQLR 40 (76)
T ss_pred ccCCcceeeeccHHHHHH
Confidence 699999999998866553
No 111
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=23.83 E-value=3e+02 Score=20.30 Aligned_cols=8 Identities=38% Similarity=0.846 Sum_probs=3.3
Q ss_pred HHHHHHHH
Q psy11969 112 IEDRKKQL 119 (170)
Q Consensus 112 L~e~e~~l 119 (170)
+++++..+
T Consensus 122 lee~e~~l 129 (158)
T PF09744_consen 122 LEEREAEL 129 (158)
T ss_pred cchhHHHH
Confidence 34444443
No 112
>PRK09973 putative outer membrane lipoprotein; Provisional
Probab=23.77 E-value=2.3e+02 Score=18.79 Aligned_cols=44 Identities=18% Similarity=0.192 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q psy11969 60 TDLSQNLQLLSEKARSTTEFIKRLKSIADLLNDNSIEFESQIVA 103 (170)
Q Consensus 60 ~~L~~~l~~L~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~I~~ 103 (170)
.+|...++.+..+...+...+..........++.+..+..+|.+
T Consensus 27 dqLss~V~~L~~kvdql~~dv~~a~aaa~aAk~EA~RAN~RiDN 70 (85)
T PRK09973 27 NQLASNVQTLNAKIARLEQDMKALRPQIYAAKSEANRANTRLDA 70 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 46777888888888888888888887788888888888888855
No 113
>COG1322 Predicted nuclease of restriction endonuclease-like fold, RmuC family [General function prediction only]
Probab=23.48 E-value=5e+02 Score=22.68 Aligned_cols=14 Identities=21% Similarity=0.003 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHHhc
Q psy11969 147 RTTALLQFCIEALK 160 (170)
Q Consensus 147 ~l~~~i~~l~e~l~ 160 (170)
.+..-...+...++
T Consensus 175 ~la~e~~~Lt~~Lk 188 (448)
T COG1322 175 QLAQEAGNLTAALK 188 (448)
T ss_pred HHHHHHHHHHHHHc
Confidence 33333333344443
No 114
>KOG4302|consensus
Probab=23.34 E-value=6e+02 Score=23.49 Aligned_cols=30 Identities=23% Similarity=0.101 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy11969 133 ILREQVSGCACKLQRTTALLQFCIEALKET 162 (170)
Q Consensus 133 ~l~~~~~~l~~~l~~l~~~i~~l~e~l~~~ 162 (170)
.+.+...+..+.+..+..-+..++..|..+
T Consensus 237 ~l~~~k~qr~~kl~~l~~~~~~LWn~l~ts 266 (660)
T KOG4302|consen 237 KLKEEKKQRLQKLQDLRTKLLELWNLLDTS 266 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 334444444444455555555555555443
No 115
>KOG2391|consensus
Probab=22.96 E-value=4.6e+02 Score=22.10 Aligned_cols=29 Identities=14% Similarity=0.145 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11969 62 LSQNLQLLSEKARSTTEFIKRLKSIADLL 90 (170)
Q Consensus 62 L~~~l~~L~~~~~e~~~~~~~l~~~~~~~ 90 (170)
+...++.++.+.+++..-.+++....+.+
T Consensus 230 ~~aeq~slkRt~EeL~~G~~kL~~~~etL 258 (365)
T KOG2391|consen 230 LQAEQESLKRTEEELNIGKQKLVAMKETL 258 (365)
T ss_pred HHHHHHHHHhhHHHHHhhHHHHHHHHHHH
Confidence 33344444444444444333333333333
No 116
>KOG0963|consensus
Probab=22.58 E-value=6e+02 Score=23.24 Aligned_cols=60 Identities=10% Similarity=0.073 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11969 98 ESQIVAQCDALIKAIEDRKKQLVDAIRLEKESKQRILREQVSGCACKLQRTTALLQFCIE 157 (170)
Q Consensus 98 ~~~I~~~f~~L~~~L~e~e~~ll~~Le~e~~~~l~~l~~~~~~l~~~l~~l~~~i~~l~e 157 (170)
+..+...-..+..+++..-...-+.++.+...+...|.+....+..++..+...+..++.
T Consensus 151 ~e~l~k~~~~~~~~ie~~a~~~e~~~~q~~~e~e~~L~~~~~~~~~q~~~le~ki~~lq~ 210 (629)
T KOG0963|consen 151 KERLRKLEQLLEIFIENAANETEEKLEQEWAEREAGLKDEEQNLQEQLEELEKKISSLQS 210 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333334444444444444444444444444444444444433
No 117
>KOG2271|consensus
Probab=21.68 E-value=3.8e+02 Score=24.69 Aligned_cols=109 Identities=16% Similarity=0.146 Sum_probs=60.5
Q ss_pred ccCCCCchHHHHHHHHHHHHHHHHHhcccccccCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11969 9 RESTPRPSAYKAALVFKLLTDLSQNLQLLSEKARSTTEFIKRLKSIADLLNTDLSQNLQLLSEKARSTTEFIKRLKSIAD 88 (170)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Hk~H~v~~leeA~~~~K~~L~~~l~~L~~~~~e~~~~~~~l~~~~~ 88 (170)
+.+|--|.|++---.+.+.--|+|...|++.++. -...|+--| .+. ..+-..+..++.....+.++..+.+.-..
T Consensus 198 ~~~t~~d~fW~~v~~l~l~G~ld~~i~~l~~~~~---~~~~s~~~~-v~~-~~i~~s~pl~~~g~~~ls~t~~~Wk~w~~ 272 (678)
T KOG2271|consen 198 EDATEHDEFWKLVNSLLLRGLLDQVISCLERSGL---APCLSFLCA-VEL-LDILRSMPLLQQGPKDLSETERRWKNWHL 272 (678)
T ss_pred cCCCCCchHHHHHHHHHHhhHHHHHHHHHHhcCC---CccchhHHH-HHH-HHHhCccccccccchhHHHHHHHHHHHHH
Confidence 5677777799999999999999999999986543 222333111 000 12223333344333333333333333333
Q ss_pred HHhh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11969 89 LLND---NSIEFESQIVAQCDALIKAIEDRKKQLVDA 122 (170)
Q Consensus 89 ~~~~---~~~~~~~~I~~~f~~L~~~L~e~e~~ll~~ 122 (170)
.+.. .++.........|+.|..++...+..++..
T Consensus 273 kle~~~~~~qd~~~~t~~~le~lLkil~Gn~~~l~~~ 309 (678)
T KOG2271|consen 273 KLERAGSKAQDISFETRDYLEDLLKILLGNERKLLAY 309 (678)
T ss_pred HHHhhhhhhccccccchhhHHHHHHHHcCCHHHHHHH
Confidence 3332 333344455667777777776666666654
No 118
>KOG0971|consensus
Probab=21.67 E-value=7.5e+02 Score=24.06 Aligned_cols=112 Identities=17% Similarity=0.172 Sum_probs=0.0
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11969 48 IKRLKSIADLLNTDLSQNLQLLSEKARSTTEFIKRLKSIADLLN------DNSIEFESQIVAQCDALIKAIEDRKKQLVD 121 (170)
Q Consensus 48 v~~leeA~~~~K~~L~~~l~~L~~~~~e~~~~~~~l~~~~~~~~------~~~~~~~~~I~~~f~~L~~~L~e~e~~ll~ 121 (170)
++|+..+ +.-...|+..+..|.++...+......-+.....+. +....++.+|-..-..|..-|.+...+.-+
T Consensus 216 ~v~l~sa-skte~eLr~QvrdLtEkLetlR~kR~EDk~Kl~ElekmkiqleqlqEfkSkim~qqa~Lqrel~raR~e~ke 294 (1243)
T KOG0971|consen 216 VVPLPSA-SKTEEELRAQVRDLTEKLETLRLKRAEDKAKLKELEKMKIQLEQLQEFKSKIMEQQADLQRELKRARKEAKE 294 (1243)
T ss_pred cCCCCcc-ccchHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy11969 122 AIRLEKESKQRI----------------LREQVSGCACKLQRTTALLQFCIEALK 160 (170)
Q Consensus 122 ~Le~e~~~~l~~----------------l~~~~~~l~~~l~~l~~~i~~l~e~l~ 160 (170)
+++...+.+..- .++..+.++..+..+++.++.+.--++
T Consensus 295 aqe~ke~~k~emad~ad~iEmaTldKEmAEERaesLQ~eve~lkEr~deletdlE 349 (1243)
T KOG0971|consen 295 AQEAKERYKEEMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELETDLE 349 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 119
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=21.09 E-value=6.9e+02 Score=23.41 Aligned_cols=14 Identities=7% Similarity=0.223 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHHHH
Q psy11969 112 IEDRKKQLVDAIRL 125 (170)
Q Consensus 112 L~e~e~~ll~~Le~ 125 (170)
+++++..++.....
T Consensus 555 l~~~~~~~~~~a~~ 568 (771)
T TIGR01069 555 LKERERNKKLELEK 568 (771)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 120
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=20.95 E-value=6e+02 Score=22.66 Aligned_cols=99 Identities=19% Similarity=0.234 Sum_probs=58.3
Q ss_pred CchHHH-HHHHH-HHHHHHHHHhcccccccCcccccccchHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Q psy11969 14 RPSAYK-AALVF-KLLTDLSQNLQLLSEKARSTTEFIKRLKSIADLLNTDLSQNLQLLSE-KARSTTEFIKRLKSIADLL 90 (170)
Q Consensus 14 ~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~Hk~H~v~~leeA~~~~K~~L~~~l~~L~~-~~~e~~~~~~~l~~~~~~~ 90 (170)
.|..|. |.-.| .-+.+|+....-+...+-|=.| ..++...+..+..+...+..+.+ ..+.+...+..+...++.+
T Consensus 217 iP~l~~~~~~~~P~ql~el~~gy~~m~~~gy~~~~--~~i~~~i~~l~~~i~~~~~~l~~l~l~~~~~~~~~i~~~Id~L 294 (569)
T PRK04778 217 IPELLKELQTELPDQLQELKAGYRELVEEGYHLDH--LDIEKEIQDLKEQIDENLALLEELDLDEAEEKNEEIQERIDQL 294 (569)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCCCC--CChHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHH
Confidence 566665 33335 6778888888877765555555 46788888888888887666655 2444444444444444433
Q ss_pred hh---hHHHHHHHHHHHHHHHHHHHHH
Q psy11969 91 ND---NSIEFESQIVAQCDALIKAIED 114 (170)
Q Consensus 91 ~~---~~~~~~~~I~~~f~~L~~~L~e 114 (170)
-+ +-..++..+......+..+|..
T Consensus 295 yd~lekE~~A~~~vek~~~~l~~~l~~ 321 (569)
T PRK04778 295 YDILEREVKARKYVEKNSDTLPDFLEH 321 (569)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 32 2233444555555555555443
No 121
>KOG3096|consensus
Probab=20.73 E-value=4.1e+02 Score=20.69 Aligned_cols=57 Identities=12% Similarity=0.028 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q psy11969 52 KSIADLLNTDLSQNLQLLSEKARSTTEFIKRLKSIADLLNDNSIEFESQIVAQCDAL 108 (170)
Q Consensus 52 eeA~~~~K~~L~~~l~~L~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~I~~~f~~L 108 (170)
.+||..+-+.|...+..++....+..+.+..+.......+-.+...-..+...|..|
T Consensus 126 ~eaw~~~ne~le~~l~~aqkelq~~kk~iq~vn~~RK~~Q~~ag~rL~~le~~wvqL 182 (225)
T KOG3096|consen 126 EEAWKQYNEVLEVMLTHAQKELQKTKKLIQDVNRQRKHAQLTAGERLRELEQKWVQL 182 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467777777777777777766666666666655554444444333333444444433
No 122
>PF07195 FliD_C: Flagellar hook-associated protein 2 C-terminus; InterPro: IPR010809 The flagellar hook-associated protein 2 (HAP2 or FliD) forms the distal end of the flagella, and plays a role in mucin specific adhesion of the bacteria []. This alignment covers the C-terminal region of the flagellar hook-associated protein 2.; GO: 0007155 cell adhesion, 0009288 bacterial-type flagellum
Probab=20.60 E-value=4.1e+02 Score=20.60 Aligned_cols=23 Identities=17% Similarity=0.138 Sum_probs=8.7
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHH
Q psy11969 88 DLLNDNSIEFESQIVAQCDALIK 110 (170)
Q Consensus 88 ~~~~~~~~~~~~~I~~~f~~L~~ 110 (170)
..+..+....+..+...|..|..
T Consensus 210 ~~~~~rl~~~~~~l~~qf~~me~ 232 (239)
T PF07195_consen 210 EDLEERLESKEERLRKQFSAMES 232 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333334443333
No 123
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=20.50 E-value=4.8e+02 Score=21.38 Aligned_cols=111 Identities=14% Similarity=0.100 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11969 51 LKSIADLLNTDLSQNLQLLSEKARSTTEFIKRLKSIADLLNDNSIEFESQIV--AQCDALIKAIEDRKKQLVDAIRLEKE 128 (170)
Q Consensus 51 leeA~~~~K~~L~~~l~~L~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~I~--~~f~~L~~~L~e~e~~ll~~Le~e~~ 128 (170)
|.+...+..+.|......|......+...+..+......+.......+.... ..++.-.-.--..+-.-+..-=...+
T Consensus 150 l~~~L~~~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~~~e~~~~D~~eL~~lr~eL~~~~~~i~~~k 229 (325)
T PF08317_consen 150 LKEGLEENLELLQEDYAKLDKQLEQLDELLPKLRERKAELEEELENLKQLVEEIESCDQEELEALRQELAEQKEEIEAKK 229 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy11969 129 SKQRILREQVSGCACKLQRTTALLQFCIEALKE 161 (170)
Q Consensus 129 ~~l~~l~~~~~~l~~~l~~l~~~i~~l~e~l~~ 161 (170)
..+..++..+..+...+..+..-...+...+.+
T Consensus 230 ~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e 262 (325)
T PF08317_consen 230 KELAELQEELEELEEKIEELEEQKQELLAEIAE 262 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 124
>KOG3958|consensus
Probab=20.37 E-value=5.1e+02 Score=21.56 Aligned_cols=52 Identities=27% Similarity=0.234 Sum_probs=32.5
Q ss_pred CCCCch-----HHHHHHHHHHHHHHHHHhccccc--ccCcccccccchHHHHHHHHHHH
Q psy11969 11 STPRPS-----AYKAALVFKLLTDLSQNLQLLSE--KARSTTEFIKRLKSIADLLNTDL 62 (170)
Q Consensus 11 ~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~--~~~Hk~H~v~~leeA~~~~K~~L 62 (170)
.||+|- +-+.+..-+-+++|-+.+-|--+ ++.-.+-.-.++=|+.+.++.+.
T Consensus 179 ~~p~p~~d~s~~akVA~LE~Rlt~lE~vvg~~~d~~~~lsa~~~~a~vletVe~L~~k~ 237 (371)
T KOG3958|consen 179 GTPRPEQDFSQAAKVAELEKRLTELETVVGCDQDAQNPLSAGLQGACVLETVELLQAKV 237 (371)
T ss_pred CCCCCCccHHHHHHHHHHHHHHHHHHHHHcCCccccCchhhccCCchHHHHHHHHHHHH
Confidence 467776 33455666678899999999322 11234555667777777766554
No 125
>KOG4643|consensus
Probab=20.13 E-value=8.4e+02 Score=23.98 Aligned_cols=48 Identities=13% Similarity=0.186 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11969 108 LIKAIEDRKKQLVDAIRLEKE--SKQRILREQVSGCACKLQRTTALLQFC 155 (170)
Q Consensus 108 L~~~L~e~e~~ll~~Le~e~~--~~l~~l~~~~~~l~~~l~~l~~~i~~l 155 (170)
+.--++++-..++.+|..... .....|+..++.++..-..++..+..+
T Consensus 538 ~l~~lE~ENa~LlkqI~~Lk~t~qn~~~LEq~~n~lE~~~~elkk~idaL 587 (1195)
T KOG4643|consen 538 LLGNLEEENAHLLKQIQSLKTTSQNGALLEQNNNDLELIHNELKKYIDAL 587 (1195)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 334466677777777776555 455555555555554444444444443
Done!