Query psy11969
Match_columns 170
No_of_seqs 103 out of 721
Neff 8.2
Searched_HMMs 29240
Date Fri Aug 16 15:16:41 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11969.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/11969hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2csv_A Tripartite motif protei 95.1 0.0028 9.6E-08 39.6 -0.6 27 35-63 42-68 (72)
2 3ghg_A Fibrinogen alpha chain; 94.6 1.9 6.6E-05 36.6 15.3 113 49-163 49-165 (562)
3 2d8u_A Ubiquitin ligase TRIM63 94.1 0.00023 7.8E-09 43.6 -7.4 23 41-63 38-60 (64)
4 2dja_A Midline-2; tripartite m 93.7 1.9E-05 6.4E-10 51.3 -13.6 30 41-70 48-77 (84)
5 2did_A Tripartite motif protei 89.9 0.028 9.5E-07 32.7 -1.5 16 41-56 37-52 (53)
6 2yvr_A Transcription intermedi 89.8 0.054 1.8E-06 31.0 -0.2 20 35-56 31-50 (50)
7 1deq_A Fibrinogen (alpha chain 88.6 8.9 0.0003 31.3 16.2 110 51-161 54-166 (390)
8 2eqb_B RAB guanine nucleotide 86.3 5.2 0.00018 26.2 14.1 92 50-146 2-93 (97)
9 2yrg_A Tripartite motif-contai 84.9 0.06 2.1E-06 32.1 -2.1 16 41-56 43-58 (59)
10 1nfn_A Apolipoprotein E3; lipi 80.8 11 0.00039 27.6 8.5 6 27-32 37-42 (191)
11 1m1j_B Fibrinogen beta chain; 80.1 25 0.00087 29.4 17.9 111 49-159 85-198 (464)
12 3nmd_A CGMP dependent protein 79.5 7.8 0.00027 24.0 6.0 32 42-73 6-39 (72)
13 3ddt_A E3 ubiquitin-protein li 77.2 0.34 1.2E-05 27.3 -0.6 13 41-53 36-48 (48)
14 3ghg_B Fibrinogen beta chain; 75.9 34 0.0012 28.6 16.3 115 49-163 80-197 (461)
15 3ghg_C Fibrinogen gamma chain; 75.4 33 0.0011 28.3 11.2 110 49-162 23-138 (411)
16 3mq7_A Bone marrow stromal ant 74.9 12 0.00042 25.2 6.4 52 20-71 23-78 (121)
17 1fre_A Nuclear factor XNF7; zi 74.5 0.91 3.1E-05 24.6 0.7 16 35-51 27-42 (42)
18 3ol1_A Vimentin; structural ge 74.4 17 0.00058 24.5 14.4 97 47-152 10-106 (119)
19 1gs9_A Apolipoprotein E, APOE4 67.4 31 0.0011 24.6 8.3 67 56-122 58-125 (165)
20 1m1j_A Fibrinogen alpha subuni 66.2 58 0.002 27.3 16.5 112 50-163 51-166 (491)
21 3r2p_A Apolipoprotein A-I; amp 64.2 37 0.0013 24.4 13.4 55 90-144 109-163 (185)
22 2l7b_A Apolipoprotein E, APO-E 63.3 37 0.0013 26.8 8.1 67 51-123 101-167 (307)
23 2e7s_A RAB guanine nucleotide 63.0 35 0.0012 23.7 7.3 106 45-155 14-122 (135)
24 1jnm_A Proto-oncogene C-JUN; B 55.8 29 0.00098 20.4 5.8 43 53-95 11-53 (62)
25 2jun_A Midline-1; B-BOX, TRIM, 55.6 2.4 8.1E-05 27.4 -0.1 13 41-53 89-101 (101)
26 2dfs_A Myosin-5A; myosin-V, in 52.8 1.5E+02 0.005 27.6 15.9 21 129-149 1023-1043(1080)
27 2a01_A Apolipoprotein A-I; fou 47.8 86 0.0029 23.5 9.7 57 56-112 102-163 (243)
28 3swk_A Vimentin; cytoskeleton, 47.6 50 0.0017 20.8 11.1 14 134-147 68-81 (86)
29 1fio_A SSO1 protein; four heli 47.0 75 0.0025 22.6 12.8 69 14-84 4-73 (196)
30 3mq9_A Bone marrow stromal ant 42.4 1.4E+02 0.0047 24.3 16.9 48 50-98 370-417 (471)
31 3oja_B Anopheles plasmodium-re 42.3 1.5E+02 0.0051 24.7 16.6 23 138-160 560-582 (597)
32 2egm_A Tripartite motif-contai 42.2 2.8 9.6E-05 24.4 -1.3 11 41-51 47-57 (57)
33 1t2k_D Cyclic-AMP-dependent tr 40.9 52 0.0018 19.1 8.1 46 53-98 11-56 (61)
34 1deq_A Fibrinogen (alpha chain 39.5 1.5E+02 0.0053 24.1 12.7 15 92-106 120-134 (390)
35 1ci6_A Transcription factor AT 37.1 64 0.0022 19.0 8.4 48 52-99 11-58 (63)
36 4abm_A Charged multivesicular 36.6 76 0.0026 19.7 9.9 17 130-146 60-76 (79)
37 3na7_A HP0958; flagellar bioge 35.7 1.4E+02 0.0047 22.4 13.1 42 60-101 42-83 (256)
38 1m1j_C Fibrinogen gamma chain; 35.3 1.9E+02 0.0063 23.8 15.5 106 49-159 23-135 (409)
39 2fzt_A Hypothetical protein TM 34.7 81 0.0028 19.5 9.0 54 103-156 18-78 (79)
40 2ocy_A RAB guanine nucleotide 34.7 1.2E+02 0.0041 21.4 16.0 71 90-160 73-146 (154)
41 3r2p_A Apolipoprotein A-I; amp 33.3 1.3E+02 0.0044 21.4 9.8 8 28-35 37-44 (185)
42 2wt7_A Proto-oncogene protein 33.0 75 0.0026 18.6 8.4 40 53-92 12-51 (63)
43 1nfn_A Apolipoprotein E3; lipi 31.5 1.5E+02 0.005 21.4 11.0 11 100-110 103-113 (191)
44 2l5g_B Putative uncharacterize 27.9 79 0.0027 17.2 4.5 31 61-91 6-36 (42)
45 5gds_I Hirunorm V; serine prot 24.8 24 0.00081 16.9 0.7 15 42-56 11-25 (26)
46 2a01_A Apolipoprotein A-I; fou 24.4 2.2E+02 0.0075 21.2 11.5 25 50-74 52-76 (243)
47 1wi9_A Protein C20ORF116 homol 23.6 37 0.0013 20.9 1.6 28 43-70 16-43 (72)
48 1fxk_A Prefoldin; archaeal pro 22.9 1.5E+02 0.0051 18.7 5.4 18 61-78 69-86 (107)
49 1m1j_A Fibrinogen alpha subuni 22.7 3.4E+02 0.012 22.7 12.9 11 95-105 121-131 (491)
50 1x79_B RAB GTPase binding effe 21.6 1.8E+02 0.0063 19.3 9.6 14 135-148 76-89 (112)
51 1gmj_A ATPase inhibitor; coile 21.3 1.6E+02 0.0056 18.5 8.3 28 130-157 52-79 (84)
52 2efr_A General control protein 21.1 2.2E+02 0.0076 20.0 10.8 6 32-37 56-61 (155)
53 2zqm_A Prefoldin beta subunit 20.5 1.8E+02 0.0061 18.6 7.2 6 64-69 77-82 (117)
54 1ihs_I Hirutonin; hydrolase(se 20.3 45 0.0015 15.9 1.1 17 42-58 6-22 (26)
55 1jcd_A Major outer membrane li 20.1 1.3E+02 0.0046 17.0 7.2 41 61-101 8-48 (52)
No 1
>2csv_A Tripartite motif protein 29; ZF-B_BOX domain, TRIM29, ataxia-telangiectasia group D-associated protein, ATDC, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1
Probab=95.08 E-value=0.0028 Score=39.63 Aligned_cols=27 Identities=4% Similarity=-0.074 Sum_probs=22.4
Q ss_pred cccccccCcccccccchHHHHHHHHHHHH
Q psy11969 35 QLLSEKARSTTEFIKRLKSIADLLNTDLS 63 (170)
Q Consensus 35 ~~~~~~~~Hk~H~v~~leeA~~~~K~~L~ 63 (170)
.|.. ++|++|.++||++|++.+|++|+
T Consensus 42 ~C~~--~~H~~H~~~~l~ea~~~~k~~L~ 68 (72)
T 2csv_A 42 LCMF--QEHKNHSTVTVEEAKAEKETESG 68 (72)
T ss_dssp HHHH--TTTSSSCEEEHHHHHHHHSSCCC
T ss_pred ccCC--CCCCCCCEecHHHHHHHHHHHHH
Confidence 4554 48999999999999999987664
No 2
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=94.55 E-value=1.9 Score=36.64 Aligned_cols=113 Identities=13% Similarity=0.171 Sum_probs=76.5
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11969 49 KRLKSIADLLNTDLSQNLQLLSEKARSTTEFIKRL----KSIADLLNDNSIEFESQIVAQCDALIKAIEDRKKQLVDAIR 124 (170)
Q Consensus 49 ~~leeA~~~~K~~L~~~l~~L~~~~~e~~~~~~~l----~~~~~~~~~~~~~~~~~I~~~f~~L~~~L~e~e~~ll~~Le 124 (170)
+-|.....+....+...|+.|+....++++.-... +..++.++.+..... ...+.|.++-.-|+.+...|-..|+
T Consensus 49 CrLQglLdkqErDltkrINELKnqLEdlsKnsKdseqy~k~~~E~Lr~rq~q~~-dNdNtynE~S~ELRRrIqyLKekVd 127 (562)
T 3ghg_A 49 CRMKGLIDEVNQDFTNRINKLKNSLFEYQKNNKDSHSLTTNIMEILRGDFSSAN-NRDNTYNRVSEDLRSRIEVLKRKVI 127 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTSSHHHHHH-HHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred cchhhhHHhhcCcHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHhhh-ccchhHHHHHHHHHHHHHHHHHHHH
Confidence 44666677777788888888888877776544442 333444443333333 5566677777777788777878887
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Q psy11969 125 LEKESKQRILREQVSGCACKLQRTTALLQFCIEALKETD 163 (170)
Q Consensus 125 ~e~~~~l~~l~~~~~~l~~~l~~l~~~i~~l~e~l~~~~ 163 (170)
..- ..++.|+..+.....+|.+|...|..--..++...
T Consensus 128 nQl-snIrvLQsnLedq~~kIQRLEvDIdiqirsCKgsC 165 (562)
T 3ghg_A 128 EKV-QHIQLLQKNVRAQLVDMKRLEVDIDIKIRSCRGSC 165 (562)
T ss_dssp HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTB
T ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 777 66678888888888888888877766555565443
No 3
>2d8u_A Ubiquitin ligase TRIM63; tripartite motif-containing 63, muscle-specific ring finger protein 1, MURF1, ring finger protein 28; NMR {Homo sapiens} SCOP: g.43.1.1
Probab=94.10 E-value=0.00023 Score=43.60 Aligned_cols=23 Identities=13% Similarity=0.020 Sum_probs=19.9
Q ss_pred cCcccccccchHHHHHHHHHHHH
Q psy11969 41 ARSTTEFIKRLKSIADLLNTDLS 63 (170)
Q Consensus 41 ~~Hk~H~v~~leeA~~~~K~~L~ 63 (170)
++|++|.++||++|++.+|++|+
T Consensus 38 ~~H~~H~~~~l~~a~~~~k~~L~ 60 (64)
T 2d8u_A 38 GIHKACEVAPLQSVFQGQKTESG 60 (64)
T ss_dssp SSTTSSCEECTTTCCSSCCCCSS
T ss_pred CcCCCCCeeCHHHHHHHHHHHHH
Confidence 48999999999999998876654
No 4
>2dja_A Midline-2; tripartite motif protein 1, ZF-B_BOX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dq5_A
Probab=93.71 E-value=1.9e-05 Score=51.31 Aligned_cols=30 Identities=23% Similarity=0.247 Sum_probs=24.4
Q ss_pred cCcccccccchHHHHHHHHHHHHHHHHHHH
Q psy11969 41 ARSTTEFIKRLKSIADLLNTDLSQNLQLLS 70 (170)
Q Consensus 41 ~~Hk~H~v~~leeA~~~~K~~L~~~l~~L~ 70 (170)
++|++|.++||++|++++|++|+..+..++
T Consensus 48 ~~H~~H~~~~l~ea~~~~k~~L~~~l~~L~ 77 (84)
T 2dja_A 48 GRHRDHQVASLNDRFEKLKQTLEMNLTNLV 77 (84)
T ss_dssp STTTTCCBCCCCSSCCCCCCCCCCCCCCCC
T ss_pred CCCCCCCccCHHHHHHHHHHHHHHHHHHHH
Confidence 489999999999999998887766555443
No 5
>2did_A Tripartite motif protein 39; ZF-B-box domian, Zn binding, one sequence two fold, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dif_A
Probab=89.87 E-value=0.028 Score=32.71 Aligned_cols=16 Identities=6% Similarity=0.032 Sum_probs=14.1
Q ss_pred cCcccccccchHHHHH
Q psy11969 41 ARSTTEFIKRLKSIAD 56 (170)
Q Consensus 41 ~~Hk~H~v~~leeA~~ 56 (170)
++|++|.++||++|++
T Consensus 37 ~~H~~H~~~~l~ea~~ 52 (53)
T 2did_A 37 HTHRAHTVVPLSGPSS 52 (53)
T ss_dssp STTTTSCEEECCCTTT
T ss_pred CCCCCCcEeeHHHHhc
Confidence 4899999999999864
No 6
>2yvr_A Transcription intermediary factor 1-beta; ZF-B_BOX domain, structural genomics, NPPSFA; 1.80A {Homo sapiens}
Probab=89.83 E-value=0.054 Score=31.00 Aligned_cols=20 Identities=5% Similarity=-0.066 Sum_probs=13.8
Q ss_pred cccccccCcccccccchHHHHH
Q psy11969 35 QLLSEKARSTTEFIKRLKSIAD 56 (170)
Q Consensus 35 ~~~~~~~~Hk~H~v~~leeA~~ 56 (170)
.|.. + +|++|.+.||++|++
T Consensus 31 ~C~~-~-~H~~H~~~~l~ea~~ 50 (50)
T 2yvr_A 31 DCQL-N-AHKDHQYQFLEDAVR 50 (50)
T ss_dssp HHHH-T-TTTTCCEEETTC---
T ss_pred ccCC-C-cCCCCceecHHHHhC
Confidence 4544 2 899999999999864
No 7
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=88.60 E-value=8.9 Score=31.29 Aligned_cols=110 Identities=11% Similarity=0.165 Sum_probs=67.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11969 51 LKSIADLLNTDLSQNLQLLSEKARSTTEFIKRLKSIADLLND---NSIEFESQIVAQCDALIKAIEDRKKQLVDAIRLEK 127 (170)
Q Consensus 51 leeA~~~~K~~L~~~l~~L~~~~~e~~~~~~~l~~~~~~~~~---~~~~~~~~I~~~f~~L~~~L~e~e~~ll~~Le~e~ 127 (170)
|.....+....+...|+.|+..+..+.+.-...-.-...+.+ ............|.++-.-|+.+..-+...|...-
T Consensus 54 Lqg~Ldk~er~~~~rIe~L~~~L~~~s~s~~~~~~y~~~~~~~lk~~~~q~~dndn~~~e~s~eLe~~i~~lk~~V~~q~ 133 (390)
T 1deq_A 54 MKGLIDEVDQDFTSRINKLRDSLFNYQKNSKDSNTLTKNIVELMRGDFAKANNNDNTFKQINEDLRSRIEILRRKVIEQV 133 (390)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444445555566666666666655555443332221111111 11222334456677777777777777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy11969 128 ESKQRILREQVSGCACKLQRTTALLQFCIEALKE 161 (170)
Q Consensus 128 ~~~l~~l~~~~~~l~~~l~~l~~~i~~l~e~l~~ 161 (170)
. .++.|+..+.....++.+|...|+.+...++.
T Consensus 134 ~-~ir~Lq~~l~~q~~kiqRLE~~Id~c~~~C~~ 166 (390)
T 1deq_A 134 Q-RINLLQKNVRDQLVDMKRLEVDIDIKIRSCKG 166 (390)
T ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 6 78888888888888888888888776655543
No 8
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=86.34 E-value=5.2 Score=26.23 Aligned_cols=92 Identities=16% Similarity=0.163 Sum_probs=56.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11969 50 RLKSIADLLNTDLSQNLQLLSEKARSTTEFIKRLKSIADLLNDNSIEFESQIVAQCDALIKAIEDRKKQLVDAIRLEKES 129 (170)
Q Consensus 50 ~leeA~~~~K~~L~~~l~~L~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~I~~~f~~L~~~L~e~e~~ll~~Le~e~~~ 129 (170)
|+...+...++.|...-..+.....++......+... ......++..+..|..+.+.|-..|-++-..|+..-..+.
T Consensus 2 ~~~~~~e~lre~l~~le~~~~~~~~e~~~L~~~l~eE-~~~R~~aE~~~~~ie~ElEeLTasLFeEAN~MVa~ar~e~-- 78 (97)
T 2eqb_B 2 PLGSNYNQLKEDYNTLKRELSDRDDEVKRLREDIAKE-NELRTKAEEEADKLNKEVEDLTASLFDEANNMVADARKEK-- 78 (97)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred cHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 5666666666666655555555444555444444332 2344577888999999999999999999999997664333
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy11969 130 KQRILREQVSGCACKLQ 146 (170)
Q Consensus 130 ~l~~l~~~~~~l~~~l~ 146 (170)
..++....++..++.
T Consensus 79 --~~~e~kn~~L~~qL~ 93 (97)
T 2eqb_B 79 --YAIEILNKRLTEQLR 93 (97)
T ss_dssp --HHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHh
Confidence 233444444444443
No 9
>2yrg_A Tripartite motif-containing protein 5; B-box domain, ring finger protein 88, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=84.93 E-value=0.06 Score=32.13 Aligned_cols=16 Identities=0% Similarity=-0.155 Sum_probs=13.8
Q ss_pred cCcccccccchHHHHH
Q psy11969 41 ARSTTEFIKRLKSIAD 56 (170)
Q Consensus 41 ~~Hk~H~v~~leeA~~ 56 (170)
++|++|.+.||++|++
T Consensus 43 ~eH~~H~~~~l~ea~~ 58 (59)
T 2yrg_A 43 QEHRGHHTFPTSGPSS 58 (59)
T ss_dssp TTTTTCCEEECCSSCC
T ss_pred CcCCCCcEeeHHHHhc
Confidence 4899999999998753
No 10
>1nfn_A Apolipoprotein E3; lipid transport, heparin-binding, plasma protein, HDL, VLDL; 1.80A {Homo sapiens} SCOP: a.24.1.1 PDB: 1h7i_A 1ea8_A 1b68_A 1nfo_A 2kc3_A 1ya9_A
Probab=80.84 E-value=11 Score=27.56 Aligned_cols=6 Identities=17% Similarity=0.036 Sum_probs=2.4
Q ss_pred HHHHHH
Q psy11969 27 LTDLSQ 32 (170)
Q Consensus 27 ~~~~~~ 32 (170)
..++++
T Consensus 37 ~~~l~~ 42 (191)
T 1nfn_A 37 LRWVQT 42 (191)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 344443
No 11
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=80.07 E-value=25 Score=29.45 Aligned_cols=111 Identities=11% Similarity=0.105 Sum_probs=62.7
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Q psy11969 49 KRLKSIADLLNTDLSQNLQLLSEKARSTTEFIKRLKSIADLLNDNSIEFESQIVA---QCDALIKAIEDRKKQLVDAIRL 125 (170)
Q Consensus 49 ~~leeA~~~~K~~L~~~l~~L~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~I~~---~f~~L~~~L~e~e~~ll~~Le~ 125 (170)
+.|.+-...++..+...+..|+.....+.+.......-+..++.........+.. ........|++....+-+.+..
T Consensus 85 C~l~D~L~k~q~~V~~~LqeLe~~l~~lsn~Ts~~~~~i~~Iq~slk~~Q~Qi~en~n~~~~~~~~~e~~~~~i~~~~~~ 164 (464)
T 1m1j_B 85 CELQTTLLKQEKTVKPVLRDLKDRVAKFSDTSTTMYQYVNMIDNKLVKTQKQRKDNDIILSEYNTEMELHYNYIKDNLDN 164 (464)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHhhhhhHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHHHHHHhc
Confidence 5677877888888888888888887777665544333334444333333332222 1222333344444444344443
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy11969 126 EKESKQRILREQVSGCACKLQRTTALLQFCIEAL 159 (170)
Q Consensus 126 e~~~~l~~l~~~~~~l~~~l~~l~~~i~~l~e~l 159 (170)
.....+..|...+..+...+..|...+......+
T Consensus 165 ~~~~~i~~L~~~~~~l~~ki~~l~~~~~~~~~~~ 198 (464)
T 1m1j_B 165 NIPSSLRVLRAVIDSLHKKIQKLENAIATQTDYC 198 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3445555666667777777777776666555544
No 12
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=79.52 E-value=7.8 Score=23.96 Aligned_cols=32 Identities=9% Similarity=0.135 Sum_probs=13.0
Q ss_pred CcccccccchHH--HHHHHHHHHHHHHHHHHHHH
Q psy11969 42 RSTTEFIKRLKS--IADLLNTDLSQNLQLLSEKA 73 (170)
Q Consensus 42 ~Hk~H~v~~lee--A~~~~K~~L~~~l~~L~~~~ 73 (170)
-|.+|...+++. ...+++..|+.....++.+-
T Consensus 6 ~~~~~~~~~~~~mgti~eLq~~L~~K~eELr~kd 39 (72)
T 3nmd_A 6 HHHHHGMASIEGRGSLRDLQYALQEKIEELRQRD 39 (72)
T ss_dssp -------------CHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccchhhcccCCcHHHHHHHHHHHHHHHHHHH
Confidence 466677777765 46677777777776665543
No 13
>3ddt_A E3 ubiquitin-protein ligase TRIM63; zinc-binding motif, ring-like fold, coiled coil, cytoplasm, metal-binding, muscle protein, nucleus; 1.90A {Homo sapiens} SCOP: g.43.1.1 PDB: 3q1d_A
Probab=77.25 E-value=0.34 Score=27.26 Aligned_cols=13 Identities=15% Similarity=0.033 Sum_probs=10.9
Q ss_pred cCcccccccchHH
Q psy11969 41 ARSTTEFIKRLKS 53 (170)
Q Consensus 41 ~~Hk~H~v~~lee 53 (170)
+.|++|+++||++
T Consensus 36 ~~H~~H~~~~l~~ 48 (48)
T 3ddt_A 36 GIHKACEVAPLQS 48 (48)
T ss_dssp STTTTSCEEECCC
T ss_pred CcCCCCcEEeCCC
Confidence 4899999999863
No 14
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=75.87 E-value=34 Score=28.63 Aligned_cols=115 Identities=11% Similarity=0.111 Sum_probs=76.1
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Q psy11969 49 KRLKSIADLLNTDLSQNLQLLSEKARSTTEFIKRLKSIADLLNDNSIEFESQIVAQ---CDALIKAIEDRKKQLVDAIRL 125 (170)
Q Consensus 49 ~~leeA~~~~K~~L~~~l~~L~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~I~~~---f~~L~~~L~e~e~~ll~~Le~ 125 (170)
+-|.+....++......|+.|+..+.++.+.-+...+-+..++.+.......+... ..+-...|++..+-..+.+..
T Consensus 80 Cglad~L~kye~~V~~dl~~Le~~l~~isn~Ts~a~~~v~~ik~s~~~~q~~~~~n~~~~~~s~~mle~~~~~~~~~~~~ 159 (461)
T 3ghg_B 80 CQLQEALLQQERPIRNSVDELNNNVEAVSQTSSSSFQYMYLLKDLWQKRQKQVKDNENVVNEYSSELEKHQLYIDETVNS 159 (461)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHTHHHHHHHT
T ss_pred chHHHHHHhcccchhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhccccCCCCcchhHHHHHHHHHHHHHHHHHhhhhc
Confidence 45788888888888888888888888887776666666666665544444333322 111223333333333333444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Q psy11969 126 EKESKQRILREQVSGCACKLQRTTALLQFCIEALKETD 163 (170)
Q Consensus 126 e~~~~l~~l~~~~~~l~~~l~~l~~~i~~l~e~l~~~~ 163 (170)
.....+..|...+..+...+..|+..+....+.+..+.
T Consensus 160 ~~~~~i~~l~~~~~~~~~~i~~l~~~~~~~~~~c~~pc 197 (461)
T 3ghg_B 160 NIPTNLRVLRSILENLRSKIQKLESDVSAQMEYCRTPC 197 (461)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSBC
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCC
Confidence 55567778888888888889999988888888776554
No 15
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=75.38 E-value=33 Score=28.28 Aligned_cols=110 Identities=16% Similarity=0.118 Sum_probs=58.3
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH------HHHHHHHHHHHHHHHHHHHHHHH
Q psy11969 49 KRLKSIADLLNTDLSQNLQLLSEKARSTTEFIKRLKSIADLLNDNSIEFES------QIVAQCDALIKAIEDRKKQLVDA 122 (170)
Q Consensus 49 ~~leeA~~~~K~~L~~~l~~L~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~------~I~~~f~~L~~~L~e~e~~ll~~ 122 (170)
+-|.+....+.......|+.|...+.++.+.-+...+-+..++........ .+...+.+ ..|++..+ ++.
T Consensus 23 Cgl~d~L~kye~~V~~~l~~L~~~l~~isn~Ts~~~~~v~~ik~~~~~~q~~~~~n~~~~~q~Sk--kml~~~~~--~~~ 98 (411)
T 3ghg_C 23 CGIADFLSTYQTKVDKDLQSLEDILHQVENKTSEVKQLIKAIQLTYNPDESSKPNMIDAATLKSR--KMLEEIMK--YEA 98 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTCCCTTCHHHHHHHHH--HHHHHHHH--HHH
T ss_pred chHHHHHHHhccchhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhccccCCCCcchhhHHHHHH--HHHHHHHH--HHH
Confidence 456777788888888888888777777776655555555555433211110 11111111 11111111 122
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy11969 123 IRLEKESKQRILREQVSGCACKLQRTTALLQFCIEALKET 162 (170)
Q Consensus 123 Le~e~~~~l~~l~~~~~~l~~~l~~l~~~i~~l~e~l~~~ 162 (170)
+-......+..|+..+......+..|+..+..+...+..+
T Consensus 99 ~~~~~~~~i~~l~~~~~~~~~~i~~L~~~v~~l~~~~~~~ 138 (411)
T 3ghg_C 99 SILTHDSSIRYLQEIYNSNNQKIVNLKEKVAQLEAQCQEP 138 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCSC
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 2222233344555566666677777777777777666543
No 16
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=74.86 E-value=12 Score=25.23 Aligned_cols=52 Identities=13% Similarity=0.103 Sum_probs=22.6
Q ss_pred HHHHH-HHHHHHHHHhccccccc---CcccccccchHHHHHHHHHHHHHHHHHHHH
Q psy11969 20 AALVF-KLLTDLSQNLQLLSEKA---RSTTEFIKRLKSIADLLNTDLSQNLQLLSE 71 (170)
Q Consensus 20 ~~~~~-~~~~~~~~~~~~~~~~~---~Hk~H~v~~leeA~~~~K~~L~~~l~~L~~ 71 (170)
|+.+- +|+.+|.|+-.-+.+.. ---++.|+.|.+.....|..-+..+..|++
T Consensus 23 CrN~T~lLq~qLTqAQe~l~~~eaQAaTCNqTV~tL~~SL~~ekaq~q~~vqeLqg 78 (121)
T 3mq7_A 23 ARNVTHLLQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQGQKKVEELEG 78 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44432 34556666543322210 122445566655555544444333333333
No 17
>1fre_A Nuclear factor XNF7; zinc-binding protein, BBOX, development, MID-blastula- transition; NMR {Xenopus laevis} SCOP: g.43.1.1
Probab=74.46 E-value=0.91 Score=24.55 Aligned_cols=16 Identities=0% Similarity=-0.070 Sum_probs=11.6
Q ss_pred cccccccCcccccccch
Q psy11969 35 QLLSEKARSTTEFIKRL 51 (170)
Q Consensus 35 ~~~~~~~~Hk~H~v~~l 51 (170)
.|.. +++|++|.+.||
T Consensus 27 ~C~~-~~~H~~H~~~~l 42 (42)
T 1fre_A 27 ICRD-SLKHASHNFLPI 42 (42)
T ss_dssp TTSS-CSSCTTCCCCCC
T ss_pred cCCC-CCCCCCCcEecC
Confidence 3543 348999999885
No 18
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=74.42 E-value=17 Score=24.48 Aligned_cols=97 Identities=10% Similarity=0.109 Sum_probs=41.5
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11969 47 FIKRLKSIADLLNTDLSQNLQLLSEKARSTTEFIKRLKSIADLLNDNSIEFESQIVAQCDALIKAIEDRKKQLVDAIRLE 126 (170)
Q Consensus 47 ~v~~leeA~~~~K~~L~~~l~~L~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~I~~~f~~L~~~L~e~e~~ll~~Le~e 126 (170)
....+...|..+-..|+..+..+......+.-.+ ..+...++.++.+...+.. ++.-++..-..+...++..
T Consensus 10 ~~~~~~~~ye~~I~~LR~qid~~~~e~a~l~lel-------dn~~~~~edfk~KyE~E~~-~r~~~E~di~~lrK~lD~~ 81 (119)
T 3ol1_A 10 HMSRLGDLYEEEMRELRRQVDQLTNDKARVEVER-------DNLAEDIMRLREKLQEEML-QREEAENTLQSFRQDVDNA 81 (119)
T ss_dssp ---CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
T ss_pred CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhhHHHHH-HHHHHHHHHHHhhhcccHH
Confidence 3466777777766666666665554433333333 3333333333332222221 2223333333333333332
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11969 127 KESKQRILREQVSGCACKLQRTTALL 152 (170)
Q Consensus 127 ~~~~l~~l~~~~~~l~~~l~~l~~~i 152 (170)
.-.+. .|+.++..+..++.-++..-
T Consensus 82 ~l~r~-dLE~~iesL~eEl~FLKk~h 106 (119)
T 3ol1_A 82 SLARL-DLERKVESLQEEIAFLKKLH 106 (119)
T ss_dssp HHHHH-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 22222 35556666666666555443
No 19
>1gs9_A Apolipoprotein E, APOE4; lipid transport, heparin-binding, plasma, lipid binding protein; 1.7A {Homo sapiens} SCOP: a.24.1.1 PDB: 1or3_A 1or2_A 1le4_A 1bz4_A 1lpe_A 1le2_A
Probab=67.39 E-value=31 Score=24.59 Aligned_cols=67 Identities=7% Similarity=0.090 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11969 56 DLLNTDLSQNLQLLSEKARSTTEFIKRL-KSIADLLNDNSIEFESQIVAQCDALIKAIEDRKKQLVDA 122 (170)
Q Consensus 56 ~~~K~~L~~~l~~L~~~~~e~~~~~~~l-~~~~~~~~~~~~~~~~~I~~~f~~L~~~L~e~e~~ll~~ 122 (170)
++++..|..++..+......+...+.=+ .+....+....+.++..+....+.++.-|.-.-..+-..
T Consensus 58 qel~~~l~~~ld~l~~~~~~l~~~L~P~t~el~~~l~~~~e~Lr~~L~~d~EelR~~l~p~~~el~~~ 125 (165)
T 1gs9_A 58 QELRALMDETMKELKAYKSELEEQLTPVAEETRARLSKELQAAQARLGADMEDVRGRLVQYRGEVQAM 125 (165)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSCCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666666666665544444332222 112334444555555566666666555555544444433
No 20
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=66.23 E-value=58 Score=27.28 Aligned_cols=112 Identities=14% Similarity=0.201 Sum_probs=71.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11969 50 RLKSIADLLNTDLSQNLQLLSEKARSTTEFIKRL----KSIADLLNDNSIEFESQIVAQCDALIKAIEDRKKQLVDAIRL 125 (170)
Q Consensus 50 ~leeA~~~~K~~L~~~l~~L~~~~~e~~~~~~~l----~~~~~~~~~~~~~~~~~I~~~f~~L~~~L~e~e~~ll~~Le~ 125 (170)
-|.....+....+...|+.|+..+.++.+.-+.. ....+.++ ............|.++-.-|+.+..-+...|..
T Consensus 51 rLqglL~kqerdv~~rI~kLkn~L~~~s~s~~~s~~y~~~~~~~lk-~~~~q~~dndn~~~e~S~eLe~ri~yIK~kVd~ 129 (491)
T 1m1j_A 51 RMQGIIDDTDQNYSQRIDNIRQQLADSQNKYKTSNRVIVETINILK-PGLEGAQQLDENYGHVSTELRRRIVTLKQRVAT 129 (491)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhHHHHhhhhHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHH-HHHhhhccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555566666666666666555432221 22222222 223333455667777777788888888888887
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Q psy11969 126 EKESKQRILREQVSGCACKLQRTTALLQFCIEALKETD 163 (170)
Q Consensus 126 e~~~~l~~l~~~~~~l~~~l~~l~~~i~~l~e~l~~~~ 163 (170)
.- ..+..|+..+......+.+|...|..--+.++.+.
T Consensus 130 qi-~~IrvLq~~l~~q~skIQRLE~dI~~q~~~Cr~pC 166 (491)
T 1m1j_A 130 QV-NRIKALQNSIQEQVVEMKRLEVDIDIKIRACKGSC 166 (491)
T ss_dssp HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTB
T ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchh
Confidence 77 77888888898888888888888877666665554
No 21
>3r2p_A Apolipoprotein A-I; amphipathic alpha-helix, major protein of high density lipop (HDL), lipid binding, plasma, lipid transport; 2.20A {Homo sapiens} PDB: 1gw3_A 1gw4_A
Probab=64.17 E-value=37 Score=24.37 Aligned_cols=55 Identities=9% Similarity=0.111 Sum_probs=25.2
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11969 90 LNDNSIEFESQIVAQCDALIKAIEDRKKQLVDAIRLEKESKQRILREQVSGCACK 144 (170)
Q Consensus 90 ~~~~~~~~~~~I~~~f~~L~~~L~e~e~~ll~~Le~e~~~~l~~l~~~~~~l~~~ 144 (170)
+..+++..+.++.-....|+.-++..-..+-..|.---+....++..+++.+...
T Consensus 109 ~~~~~e~lr~~l~Py~~el~~~~~~~~e~Lr~~L~p~~e~lr~~l~~~~e~lk~~ 163 (185)
T 3r2p_A 109 WQEEMELYRQKVEPLRAELQEGARQKLHELQEKLSPLGEEMRDRARAHVDALRTH 163 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555555555555555555554444433333333333333444444444433
No 22
>2l7b_A Apolipoprotein E, APO-E; lipid transport, atherosclerosis, alzheime disease; NMR {Homo sapiens}
Probab=63.33 E-value=37 Score=26.78 Aligned_cols=67 Identities=10% Similarity=0.153 Sum_probs=30.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11969 51 LKSIADLLNTDLSQNLQLLSEKARSTTEFIKRLKSIADLLNDNSIEFESQIVAQCDALIKAIEDRKKQLVDAI 123 (170)
Q Consensus 51 leeA~~~~K~~L~~~l~~L~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~I~~~f~~L~~~L~e~e~~ll~~L 123 (170)
|.+..+..+++|...+..++.+..-....+ ...+..+.+..+..+....++|+.-+...-..+-..|
T Consensus 101 l~~~~~~Lr~~L~~dlEelR~~L~Py~~el------~~~l~~~~eelr~kL~Py~~EL~~~~~~~~eeLr~~L 167 (307)
T 2l7b_A 101 LSKELQAAQARLGADMEDVCGRLVQYRGEV------QAMLGQSTEELRVRLASHLRKLRKRLLRDADDLQKRL 167 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHSSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 344445555666666655555433332211 1233334445555555555555444444444443333
No 23
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=63.05 E-value=35 Score=23.65 Aligned_cols=106 Identities=18% Similarity=0.210 Sum_probs=57.9
Q ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11969 45 TEFIKRLKSIADLLNTDLSQNLQLLSEKARSTTEFIKRLKSIAD---LLNDNSIEFESQIVAQCDALIKAIEDRKKQLVD 121 (170)
Q Consensus 45 ~H~v~~leeA~~~~K~~L~~~l~~L~~~~~e~~~~~~~l~~~~~---~~~~~~~~~~~~I~~~f~~L~~~L~e~e~~ll~ 121 (170)
.+.+.+.....+.+- .++..++.+......+..-+..+...+. .....++..+..|..+.+.|-..|.++-..|+.
T Consensus 14 r~~l~~~~~~~~~le-~l~~~l~~l~~~l~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElE~LTasLFeEAN~MVa 92 (135)
T 2e7s_A 14 LKTIASQKAAIENYN-QLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNLVA 92 (135)
T ss_dssp HHHHHHHHHHHHHHH-HHHHHHHHHHHHTTTHHHHHHTHHHHHHHTTSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444443 3444555555444444444444443322 233466777889999999999999999999997
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11969 122 AIRLEKESKQRILREQVSGCACKLQRTTALLQFC 155 (170)
Q Consensus 122 ~Le~e~~~~l~~l~~~~~~l~~~l~~l~~~i~~l 155 (170)
.-..+ ...++.....+..++..-..++..+
T Consensus 93 ~ar~~----~~~~e~r~~~L~~ql~e~e~ll~~l 122 (135)
T 2e7s_A 93 DARME----KYAIEILNKRLTEQLREKDMLLDTL 122 (135)
T ss_dssp HTTHH----HHHHHHHHHHHHHTTTHHHHCC---
T ss_pred HHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 54332 2333444444444444444444333
No 24
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=55.76 E-value=29 Score=20.36 Aligned_cols=43 Identities=19% Similarity=0.173 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q psy11969 53 SIADLLNTDLSQNLQLLSEKARSTTEFIKRLKSIADLLNDNSI 95 (170)
Q Consensus 53 eA~~~~K~~L~~~l~~L~~~~~e~~~~~~~l~~~~~~~~~~~~ 95 (170)
.|+..++..-...+..|..+...+...-..+...+..+.....
T Consensus 11 ~AA~k~R~rKk~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~ 53 (62)
T 1jnm_A 11 IAASKSRKRKLERIARLEEKVKTLKAQNSELASTANMLREQVA 53 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666666666666666555555555555544433
No 25
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=55.55 E-value=2.4 Score=27.41 Aligned_cols=13 Identities=15% Similarity=0.233 Sum_probs=11.1
Q ss_pred cCcccccccchHH
Q psy11969 41 ARSTTEFIKRLKS 53 (170)
Q Consensus 41 ~~Hk~H~v~~lee 53 (170)
++|++|.+.||++
T Consensus 89 ~~H~~H~~~~l~e 101 (101)
T 2jun_A 89 GRHRDHQVAALSE 101 (101)
T ss_dssp TTTSSSCBCCCCC
T ss_pred CCcCCCCeecCCC
Confidence 4899999999864
No 26
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=52.84 E-value=1.5e+02 Score=27.60 Aligned_cols=21 Identities=14% Similarity=-0.004 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy11969 129 SKQRILREQVSGCACKLQRTT 149 (170)
Q Consensus 129 ~~l~~l~~~~~~l~~~l~~l~ 149 (170)
.++..+++....++++++.+.
T Consensus 1023 ~kv~~L~~e~~~L~qq~~~l~ 1043 (1080)
T 2dfs_A 1023 QLVSELKEQNTLLKTEKEELN 1043 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444
No 27
>2a01_A Apolipoprotein A-I; four-helix bundle, lipid transport; HET: AC9; 2.40A {Homo sapiens} PDB: 3k2s_A* 1av1_A 3j00_0*
Probab=47.78 E-value=86 Score=23.52 Aligned_cols=57 Identities=16% Similarity=0.194 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHh----hhHHHHHHHHHHHHHHHHHHH
Q psy11969 56 DLLNTDLSQNLQLLSEKARSTTE-FIKRLKSIADLLN----DNSIEFESQIVAQCDALIKAI 112 (170)
Q Consensus 56 ~~~K~~L~~~l~~L~~~~~e~~~-~~~~l~~~~~~~~----~~~~~~~~~I~~~f~~L~~~L 112 (170)
.+++..+...+..++.+..-+.. ....+......++ ..++..+..+....+.+...|
T Consensus 102 ~el~~~~~~~~eelr~~L~P~~eel~~~~~~~~eel~~~L~p~~eelr~kl~~~veelk~~l 163 (243)
T 2a01_A 102 DDFQKKWQEEMELYRQKVEPLRAELQEGARQKLHELQEKLSPLGEEMRDRARAHVDALRTHL 163 (243)
T ss_dssp HHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHCCSCCSSTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555554433222 2222233333333 223444444444444444444
No 28
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=47.61 E-value=50 Score=20.79 Aligned_cols=14 Identities=14% Similarity=0.150 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHH
Q psy11969 134 LREQVSGCACKLQR 147 (170)
Q Consensus 134 l~~~~~~l~~~l~~ 147 (170)
|+.++..+..++.-
T Consensus 68 LE~kvesL~eEl~f 81 (86)
T 3swk_A 68 LERKVESLQEEIAF 81 (86)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 44444444444443
No 29
>1fio_A SSO1 protein; four helix bundle, alpha helix, membrane protein; 2.10A {Saccharomyces cerevisiae} SCOP: a.47.2.1
Probab=47.03 E-value=75 Score=22.58 Aligned_cols=69 Identities=9% Similarity=0.014 Sum_probs=41.0
Q ss_pred CchHHH-HHHHHHHHHHHHHHhcccccccCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11969 14 RPSAYK-AALVFKLLTDLSQNLQLLSEKARSTTEFIKRLKSIADLLNTDLSQNLQLLSEKARSTTEFIKRLK 84 (170)
Q Consensus 14 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Hk~H~v~~leeA~~~~K~~L~~~l~~L~~~~~e~~~~~~~l~ 84 (170)
.|.||. +..+-..+..+.+++.-+.. .|..+-..|-.+.....+..+.............+...+..+.
T Consensus 4 ~~~f~~~~~~i~~~i~~i~~~v~~L~~--l~~~~l~~~~~~~~~~~~~~i~~l~~~i~~~~~~~~~~lk~l~ 73 (196)
T 1fio_A 4 FVGFMNKISQINRDLDKYDHTINQVDS--LHKRLLTEVNEEQASHLRHSLDNFVAQATDLQFKLKNEIKSAQ 73 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466763 55555667777777777755 5776655555444445556666665555555555555555444
No 30
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=42.42 E-value=1.4e+02 Score=24.30 Aligned_cols=48 Identities=8% Similarity=-0.015 Sum_probs=23.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q psy11969 50 RLKSIADLLNTDLSQNLQLLSEKARSTTEFIKRLKSIADLLNDNSIEFE 98 (170)
Q Consensus 50 ~leeA~~~~K~~L~~~l~~L~~~~~e~~~~~~~l~~~~~~~~~~~~~~~ 98 (170)
+.++|.+...+.+...+...... .+..+....+...++..+.+....+
T Consensus 370 t~eeal~~~~~~i~~~l~~~~~~-~e~~~~~~~~~~~~~~~~~~~~~~~ 417 (471)
T 3mq9_A 370 TVDEALKDAQTRITAARDGLRAV-MEARNVTHLLQQELTEAQKGFQDVE 417 (471)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhhHHH-HHhhhHHHHHHHHHHHHhhhHHHHH
Confidence 45666666666666665554332 2333333334444444444433333
No 31
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=42.27 E-value=1.5e+02 Score=24.74 Aligned_cols=23 Identities=0% Similarity=-0.220 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Q psy11969 138 VSGCACKLQRTTALLQFCIEALK 160 (170)
Q Consensus 138 ~~~l~~~l~~l~~~i~~l~e~l~ 160 (170)
+..+.++...+..-+..+.+.+.
T Consensus 560 ~~~l~~e~~~~~~~~~~l~~~~~ 582 (597)
T 3oja_B 560 QAELRQETSLKRQKVKQLEAKKN 582 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 33344444444444444444443
No 32
>2egm_A Tripartite motif-containing protein 41; ZF-B_BOX domain, tripartite motif protein 41, TRIM41, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=42.20 E-value=2.8 Score=24.40 Aligned_cols=11 Identities=9% Similarity=0.039 Sum_probs=9.3
Q ss_pred cCcccccccch
Q psy11969 41 ARSTTEFIKRL 51 (170)
Q Consensus 41 ~~Hk~H~v~~l 51 (170)
++|++|.++||
T Consensus 47 ~eH~~H~~~~l 57 (57)
T 2egm_A 47 RSHKQHSVVPL 57 (57)
T ss_dssp HHHHSSCEECC
T ss_pred CCCCCCcEecC
Confidence 48999999885
No 33
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=40.87 E-value=52 Score=19.07 Aligned_cols=46 Identities=20% Similarity=0.193 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q psy11969 53 SIADLLNTDLSQNLQLLSEKARSTTEFIKRLKSIADLLNDNSIEFE 98 (170)
Q Consensus 53 eA~~~~K~~L~~~l~~L~~~~~e~~~~~~~l~~~~~~~~~~~~~~~ 98 (170)
.|+..++..-...+..|..+...+......+...+..+......++
T Consensus 11 ~AA~k~R~rKk~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk 56 (61)
T 1t2k_D 11 AAASRSRQKRKVWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLK 56 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556665555566666666666666555555555555554444443
No 34
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=39.47 E-value=1.5e+02 Score=24.07 Aligned_cols=15 Identities=7% Similarity=0.160 Sum_probs=6.7
Q ss_pred hhHHHHHHHHHHHHH
Q psy11969 92 DNSIEFESQIVAQCD 106 (170)
Q Consensus 92 ~~~~~~~~~I~~~f~ 106 (170)
......+..|...|.
T Consensus 120 ~~i~~lk~~V~~q~~ 134 (390)
T 1deq_A 120 SRIEILRRKVIEQVQ 134 (390)
T ss_pred HHHHHHHHHHHHHhH
Confidence 333444444444444
No 35
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=37.10 E-value=64 Score=18.96 Aligned_cols=48 Identities=17% Similarity=0.129 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q psy11969 52 KSIADLLNTDLSQNLQLLSEKARSTTEFIKRLKSIADLLNDNSIEFES 99 (170)
Q Consensus 52 eeA~~~~K~~L~~~l~~L~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~ 99 (170)
..|+..|+.+-......+.....++...-..+...+..+......++.
T Consensus 11 r~AA~R~R~KKk~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ 58 (63)
T 1ci6_A 11 KTAATRYRQKKRAEQEALTGECKELEKKNEALKERADSLAKEIQYLKD 58 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357777777777777777777777777766677666666655555443
No 36
>4abm_A Charged multivesicular BODY protein 4B; cell cycle, protein transport, HIV-1; 1.80A {Homo sapiens}
Probab=36.61 E-value=76 Score=19.66 Aligned_cols=17 Identities=6% Similarity=0.024 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy11969 130 KQRILREQVSGCACKLQ 146 (170)
Q Consensus 130 ~l~~l~~~~~~l~~~l~ 146 (170)
.+..+..++.+++..+.
T Consensus 60 qL~q~~~ql~~LE~q~~ 76 (79)
T 4abm_A 60 QLAQIDGTLSTIEFQRE 76 (79)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444443
No 37
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=35.72 E-value=1.4e+02 Score=22.43 Aligned_cols=42 Identities=7% Similarity=0.046 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q psy11969 60 TDLSQNLQLLSEKARSTTEFIKRLKSIADLLNDNSIEFESQI 101 (170)
Q Consensus 60 ~~L~~~l~~L~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~I 101 (170)
..+...+..+.....++...+..++..+..........+.++
T Consensus 42 ~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l 83 (256)
T 3na7_A 42 EAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKM 83 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555666666666665555555555555544444
No 38
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=35.28 E-value=1.9e+02 Score=23.76 Aligned_cols=106 Identities=8% Similarity=0.013 Sum_probs=55.7
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11969 49 KRLKSIADLLNTDLSQNLQLLSEKARSTTEFIKRLKSIADLLNDNSIE-------FESQIVAQCDALIKAIEDRKKQLVD 121 (170)
Q Consensus 49 ~~leeA~~~~K~~L~~~l~~L~~~~~e~~~~~~~l~~~~~~~~~~~~~-------~~~~I~~~f~~L~~~L~e~e~~ll~ 121 (170)
+-|.+....+...+.+.+..|...++++.+..+....-+..++..... ....+.....++..-+.+-+.
T Consensus 23 C~i~d~L~k~e~~V~~~l~~LE~~l~elsn~ts~v~~Lvk~iq~~~~~~Q~~~~d~~e~~tq~skkml~~~~~~e~---- 98 (409)
T 1m1j_C 23 CGIADFFNKYRLTTDGELLEIEGLLQQATNSTGSIEYLIQHIKTIYPSEKQTLPQSIEQLTQKSKKIIEEIIRYEN---- 98 (409)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSTTCCSSCHHHHHHHHHHHHHHHHHTHH----
T ss_pred ccHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCchhhHHHHHHHHHHHHHHHHH----
Confidence 457788888888888888888877777777766655554444432100 001111122222222222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy11969 122 AIRLEKESKQRILREQVSGCACKLQRTTALLQFCIEAL 159 (170)
Q Consensus 122 ~Le~e~~~~l~~l~~~~~~l~~~l~~l~~~i~~l~e~l 159 (170)
+-......+..|+..+......+..++..+..+...+
T Consensus 99 -~~~~~~~~i~~l~~~~~~~~~~i~~l~~~i~~l~~~~ 135 (409)
T 1m1j_C 99 -TILAHENTIQQLTDMHIMNSNKITQLKQKIAQLESHC 135 (409)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred -HhcchHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 1222233445556666666666666666666655444
No 39
>2fzt_A Hypothetical protein TM0693; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.05A {Thermotoga maritima} SCOP: a.46.3.1 PDB: 2g42_A
Probab=34.72 E-value=81 Score=19.46 Aligned_cols=54 Identities=9% Similarity=0.159 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11969 103 AQCDALIKAIEDRKKQL-------VDAIRLEKESKQRILREQVSGCACKLQRTTALLQFCI 156 (170)
Q Consensus 103 ~~f~~L~~~L~e~e~~l-------l~~Le~e~~~~l~~l~~~~~~l~~~l~~l~~~i~~l~ 156 (170)
.+|+.|...|++|+.-+ +..|-..-......+...+.++.++...++..-..++
T Consensus 18 edyE~L~~LL~kREkLlk~L~~e~l~~i~EkDk~R~~~Ik~~~~~L~q~a~~~rna~sslq 78 (79)
T 2fzt_A 18 EDYETLLSLLNKRKELMEGLPKDKLSEILEKDRKRLEIIEKRKTALFQEINVIREARSSLQ 78 (79)
T ss_dssp TCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 37888999999988654 3344444455666677777788877777776655543
No 40
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=34.67 E-value=1.2e+02 Score=21.39 Aligned_cols=71 Identities=20% Similarity=0.186 Sum_probs=46.4
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy11969 90 LNDNSIEFESQIVAQCDALIKAIEDRKKQLVDAIRLEKE---SKQRILREQVSGCACKLQRTTALLQFCIEALK 160 (170)
Q Consensus 90 ~~~~~~~~~~~I~~~f~~L~~~L~e~e~~ll~~Le~e~~---~~l~~l~~~~~~l~~~l~~l~~~i~~l~e~l~ 160 (170)
....++..+..|..+.+.|-..|.++-..|+..-..+.. .+...+..++..-..-+..+..-+..++.++.
T Consensus 73 ~R~~aE~~~~~ie~ElEeLTasLFeEAN~MVa~ar~~~~~~e~r~~~L~~ql~e~~~~l~~lq~ql~~LK~v~~ 146 (154)
T 2ocy_A 73 LRTKAEEEADKLNKEVEDLTASLFDEANNMVADARKEKYAIEILNKRLTEQLREKDTLLDTLTLQLKNLKKVMH 146 (154)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667888899999999999999999999975443322 23334445555555555555555555555553
No 41
>3r2p_A Apolipoprotein A-I; amphipathic alpha-helix, major protein of high density lipop (HDL), lipid binding, plasma, lipid transport; 2.20A {Homo sapiens} PDB: 1gw3_A 1gw4_A
Probab=33.34 E-value=1.3e+02 Score=21.40 Aligned_cols=8 Identities=25% Similarity=0.522 Sum_probs=4.3
Q ss_pred HHHHHHhc
Q psy11969 28 TDLSQNLQ 35 (170)
Q Consensus 28 ~~~~~~~~ 35 (170)
++|+|-|+
T Consensus 37 seL~qqL~ 44 (185)
T 3r2p_A 37 SALGKQLN 44 (185)
T ss_dssp SHHHHHTT
T ss_pred chHHHHHH
Confidence 45556554
No 42
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=32.98 E-value=75 Score=18.56 Aligned_cols=40 Identities=10% Similarity=-0.049 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy11969 53 SIADLLNTDLSQNLQLLSEKARSTTEFIKRLKSIADLLND 92 (170)
Q Consensus 53 eA~~~~K~~L~~~l~~L~~~~~e~~~~~~~l~~~~~~~~~ 92 (170)
.|+..++..=...+..|......+...-..+...+..+..
T Consensus 12 ~AA~rcR~rKk~~~~~Le~~v~~L~~~n~~L~~ei~~L~~ 51 (63)
T 2wt7_A 12 MAAAKCRNRRRELTDTLQAETDQLEDEKSALQTEIANLLK 51 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555555555555555555555555544444444444433
No 43
>1nfn_A Apolipoprotein E3; lipid transport, heparin-binding, plasma protein, HDL, VLDL; 1.80A {Homo sapiens} SCOP: a.24.1.1 PDB: 1h7i_A 1ea8_A 1b68_A 1nfo_A 2kc3_A 1ya9_A
Probab=31.51 E-value=1.5e+02 Score=21.43 Aligned_cols=11 Identities=9% Similarity=0.166 Sum_probs=4.1
Q ss_pred HHHHHHHHHHH
Q psy11969 100 QIVAQCDALIK 110 (170)
Q Consensus 100 ~I~~~f~~L~~ 110 (170)
.+..+.+.|+.
T Consensus 103 ~l~kdlEelr~ 113 (191)
T 1nfn_A 103 RLGADMEDVCG 113 (191)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 44
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=27.94 E-value=79 Score=17.21 Aligned_cols=31 Identities=23% Similarity=0.318 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy11969 61 DLSQNLQLLSEKARSTTEFIKRLKSIADLLN 91 (170)
Q Consensus 61 ~L~~~l~~L~~~~~e~~~~~~~l~~~~~~~~ 91 (170)
.|-+.+..+...+...+..++.++.....++
T Consensus 6 ~l~qkI~kVdrEI~Kte~kI~~lqkKlkeLe 36 (42)
T 2l5g_B 6 ELIQNMDRVDREITMVEQQISKLKKKQQQLE 36 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444433
No 45
>5gds_I Hirunorm V; serine protease-inhibitor complex, thrombin, thrombin synthe inhibitors, antithrombotics, hirunorms; HET: CHG NAL ALC DGL NAG; 2.10A {Homo sapiens} PDB: 4thn_I*
Probab=24.77 E-value=24 Score=16.92 Aligned_cols=15 Identities=0% Similarity=-0.190 Sum_probs=12.6
Q ss_pred CcccccccchHHHHH
Q psy11969 42 RSTTEFIKRLKSIAD 56 (170)
Q Consensus 42 ~Hk~H~v~~leeA~~ 56 (170)
.|.+|++-||.+++.
T Consensus 11 shn~gDfe~IPeeYl 25 (26)
T 5gds_I 11 SHXGGDYEEIPAAYX 25 (26)
T ss_pred cccCCCcccCcHhhc
Confidence 599999999988763
No 46
>2a01_A Apolipoprotein A-I; four-helix bundle, lipid transport; HET: AC9; 2.40A {Homo sapiens} PDB: 3k2s_A* 1av1_A 3j00_0*
Probab=24.42 E-value=2.2e+02 Score=21.18 Aligned_cols=25 Identities=16% Similarity=0.089 Sum_probs=12.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHH
Q psy11969 50 RLKSIADLLNTDLSQNLQLLSEKAR 74 (170)
Q Consensus 50 ~leeA~~~~K~~L~~~l~~L~~~~~ 74 (170)
.+.......++.|......+..++.
T Consensus 52 ~l~~~~~~l~~~l~p~~ee~~~~l~ 76 (243)
T 2a01_A 52 SVTSTFSKLREQLGPVTQEFWDNLE 76 (243)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCcHHHHHHHhh
Confidence 3444445555555555555555544
No 47
>1wi9_A Protein C20ORF116 homolog; helix-turn-helix motif, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.4.5.47
Probab=23.57 E-value=37 Score=20.88 Aligned_cols=28 Identities=7% Similarity=0.058 Sum_probs=20.2
Q ss_pred cccccccchHHHHHHHHHHHHHHHHHHH
Q psy11969 43 STTEFIKRLKSIADLLNTDLSQNLQLLS 70 (170)
Q Consensus 43 Hk~H~v~~leeA~~~~K~~L~~~l~~L~ 70 (170)
-+.|+|++|++.+.++.-..+..++.++
T Consensus 16 Ik~~Kvv~LedLA~~F~l~t~~~i~RI~ 43 (72)
T 1wi9_A 16 IKKSKVVLLEDLAFQMGLRTQDAINRIQ 43 (72)
T ss_dssp HHHCSEECHHHHHHHHCSCHHHHHHHHH
T ss_pred HHHcCeeeHHHHHHHhCCChHHHHHHHH
Confidence 3568999999999988755555555443
No 48
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=22.93 E-value=1.5e+02 Score=18.68 Aligned_cols=18 Identities=17% Similarity=0.405 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy11969 61 DLSQNLQLLSEKARSTTE 78 (170)
Q Consensus 61 ~L~~~l~~L~~~~~e~~~ 78 (170)
.|......+...++.+..
T Consensus 69 ~L~~~~e~i~~~i~~le~ 86 (107)
T 1fxk_A 69 ELQEKLETLQLREKTIER 86 (107)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333433333333333
No 49
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=22.70 E-value=3.4e+02 Score=22.72 Aligned_cols=11 Identities=9% Similarity=0.437 Sum_probs=4.4
Q ss_pred HHHHHHHHHHH
Q psy11969 95 IEFESQIVAQC 105 (170)
Q Consensus 95 ~~~~~~I~~~f 105 (170)
...+..|...+
T Consensus 121 ~yIK~kVd~qi 131 (491)
T 1m1j_A 121 VTLKQRVATQV 131 (491)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33334444444
No 50
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=21.64 E-value=1.8e+02 Score=19.26 Aligned_cols=14 Identities=14% Similarity=0.090 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHHH
Q psy11969 135 REQVSGCACKLQRT 148 (170)
Q Consensus 135 ~~~~~~l~~~l~~l 148 (170)
...+..+......+
T Consensus 76 q~qL~~Lt~~Re~V 89 (112)
T 1x79_B 76 QEQMAVLMQSREQV 89 (112)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 51
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=21.26 E-value=1.6e+02 Score=18.50 Aligned_cols=28 Identities=4% Similarity=0.027 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11969 130 KQRILREQVSGCACKLQRTTALLQFCIE 157 (170)
Q Consensus 130 ~l~~l~~~~~~l~~~l~~l~~~i~~l~e 157 (170)
.+..-...+..++..+...+..|..++.
T Consensus 52 el~~h~~ei~~le~~i~rhk~~i~~l~~ 79 (84)
T 1gmj_A 52 EISHHAKEIERLQKEIERHKQSIKKLKQ 79 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3344445556666666666666655544
No 52
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=21.13 E-value=2.2e+02 Score=19.97 Aligned_cols=6 Identities=50% Similarity=0.661 Sum_probs=2.3
Q ss_pred HHhccc
Q psy11969 32 QNLQLL 37 (170)
Q Consensus 32 ~~~~~~ 37 (170)
+||.|+
T Consensus 56 ~nlKsL 61 (155)
T 2efr_A 56 NNLKSL 61 (155)
T ss_dssp HHHHHH
T ss_pred Hhhccc
Confidence 334333
No 53
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=20.50 E-value=1.8e+02 Score=18.62 Aligned_cols=6 Identities=17% Similarity=0.540 Sum_probs=2.2
Q ss_pred HHHHHH
Q psy11969 64 QNLQLL 69 (170)
Q Consensus 64 ~~l~~L 69 (170)
..+..+
T Consensus 77 ~~~e~i 82 (117)
T 2zqm_A 77 EKIETL 82 (117)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 54
>1ihs_I Hirutonin; hydrolase(serine proteinase), hydrolase-hydrolase inhibitor; HET: DPN OPR; 2.00A {Homo sapiens}
Probab=20.28 E-value=45 Score=15.89 Aligned_cols=17 Identities=0% Similarity=-0.214 Sum_probs=13.8
Q ss_pred CcccccccchHHHHHHH
Q psy11969 42 RSTTEFIKRLKSIADLL 58 (170)
Q Consensus 42 ~Hk~H~v~~leeA~~~~ 58 (170)
.|.+|++-||.|.+...
T Consensus 6 shn~gDFe~IPEeYl~~ 22 (26)
T 1ihs_I 6 SHNDGDFEEIPEEYLQX 22 (26)
T ss_pred cCCCCCCCcCCHHHHhh
Confidence 59999999999876543
No 55
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=20.08 E-value=1.3e+02 Score=17.04 Aligned_cols=41 Identities=17% Similarity=0.135 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q psy11969 61 DLSQNLQLLSEKARSTTEFIKRLKSIADLLNDNSIEFESQI 101 (170)
Q Consensus 61 ~L~~~l~~L~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~I 101 (170)
.|...+..|..+...+...+..+.......++.+...-.+|
T Consensus 8 ~Lss~V~~L~~kVdqLssdV~al~~~v~~ak~eA~RAN~Rl 48 (52)
T 1jcd_A 8 QASSDAQTANAKADQASNDANAARSDAQAAKDDAARANQRA 48 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45555566666655555555555555555554444444444
Done!