RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11969
(170 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 43.5 bits (102), Expect = 1e-05
Identities = 26/167 (15%), Positives = 50/167 (29%), Gaps = 52/167 (31%)
Query: 1 MFRKVLIRRESTPRPSA--------YKAAL-----VFKLLTDLSQNLQLLSEKARSTTEF 47
F L + P + Y AAL V + ++++ + +
Sbjct: 1743 AFE-DLKSKGLIPADATFAGHSLGEY-AALASLADVM----SIESLVEVVFYRGMTMQVA 1796
Query: 48 IKRLK--------------SIADLLNTDLSQNLQLLSEKARSTTEFIKRLKSIADLLNDN 93
+ R + +A + + Q ++ + T + I N N
Sbjct: 1797 VPRDELGRSNYGMIAINPGRVAASFSQEALQ--YVVERVGKRTGWLV----EIV---NYN 1847
Query: 94 SIEFE-SQIV-----AQCDALIKAIEDRKKQLVDAIRLEKE-SKQRI 133
E Q V D + + K Q +D I L+K S + +
Sbjct: 1848 V---ENQQYVAAGDLRALDTVTNVLNFIKLQKIDIIELQKSLSLEEV 1891
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 36.4 bits (83), Expect = 0.004
Identities = 27/171 (15%), Positives = 50/171 (29%), Gaps = 53/171 (30%)
Query: 2 FRKVLIRRESTPRPSAYKAALVFKLLTDLSQNLQLLSEKA---RSTTEFIKRLKSIADLL 58
R++L + Y+ L+ +L ++ QN + A R K + D L
Sbjct: 234 LRRLLKSKP-------YENCLL--VLLNV-QNAKAW--NAFNLSCKILLTTRFKQVTDFL 281
Query: 59 NTD---------------LSQNLQLLSEKARSTTEFIKR---------LKSIADLLND-- 92
+ + LL + + + R L IA+ + D
Sbjct: 282 SAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGL 341
Query: 93 NSIEFESQIVAQCDALIKAIEDRKKQLVDAIRLEKESKQR-----ILREQV 138
+ + + CD L IE L A E ++ +
Sbjct: 342 ATWDNWKHV--NCDKLTTIIESSLNVLEPA-----EYRKMFDRLSVFPPSA 385
Score = 33.7 bits (76), Expect = 0.022
Identities = 20/103 (19%), Positives = 42/103 (40%), Gaps = 12/103 (11%)
Query: 24 FKLLTDLSQNLQLLSEKARSTTEFIKRLKSIADLLNTDLSQNLQLLSEKARSTTEFIKRL 83
L + + + L +K R + SI + L L + + + ++ + +
Sbjct: 490 MTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQ-QLKFYKPYICD---NDPKYERLV 545
Query: 84 KSIADLL---NDNSIEFESQIVAQCDALI---KAI-EDRKKQL 119
+I D L +N I + + + AL+ +AI E+ KQ+
Sbjct: 546 NAILDFLPKIEENLICSKYTDLLRI-ALMAEDEAIFEEAHKQV 587
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos
taurus} SCOP: i.9.1.1
Length = 390
Score = 35.6 bits (81), Expect = 0.005
Identities = 22/122 (18%), Positives = 46/122 (37%), Gaps = 22/122 (18%)
Query: 34 LQLLSEKARSTTEFIKRLKSIADLLNTDLSQNLQLLSEKARSTTEFIK-----------R 82
L+ E + +F R+ + D L + +N + + ++ E ++
Sbjct: 55 KGLIDEVDQ---DFTSRINKLRDSLF-NYQKNSKDSNTLTKNIVELMRGDFAKANNNDNT 110
Query: 83 LKSIADLLNDNSIEFESQIVAQCDALIKAIEDRKKQLVDAIRLEKESKQRILREQVSGCA 142
K I + L +++ Q + ++ + QLVD RLE + +I +
Sbjct: 111 FKQINEDLRSRIEILRRKVIEQVQRINLLQKNVRDQLVDMKRLEVDIDIKIR-------S 163
Query: 143 CK 144
CK
Sbjct: 164 CK 165
>2qiw_A PEP phosphonomutase; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2; HET: P6G; 1.80A {Corynebacterium glutamicum atcc
13032}
Length = 255
Score = 30.7 bits (70), Expect = 0.20
Identities = 8/51 (15%), Positives = 20/51 (39%), Gaps = 2/51 (3%)
Query: 74 RSTTEFIKRLKSIADLLNDNSIEFESQIVAQCDALIKAIEDRKKQLVDAIR 124
R E + + + ++ I + DA+ + + +V+AI+
Sbjct: 124 REAQEHADYIAAARQAADVAGVDV--VINGRTDAVKLGADVFEDPMVEAIK 172
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.5 bits (65), Expect = 0.33
Identities = 13/45 (28%), Positives = 20/45 (44%), Gaps = 17/45 (37%)
Query: 71 EKARSTTEFIKRLKSIADLLNDNSIEFESQIVAQCDAL-IKA-IE 113
EK + +K+L++ L D+S AL IKA +E
Sbjct: 18 EK-----QALKKLQASLKLYADDS----------APALAIKATME 47
Score = 25.7 bits (55), Expect = 6.8
Identities = 11/40 (27%), Positives = 18/40 (45%), Gaps = 10/40 (25%)
Query: 39 EKARSTTEFIKRLKSIADLLNTDLSQNLQLLSEKARSTTE 78
EK + +K+L++ L D + L + KA T E
Sbjct: 18 EK-----QALKKLQASLKLYADDSAPALAI---KA--TME 47
>3q1x_A Serine acetyltransferase; cysteine biosynthesis, LEFT handed helix,
OASS; 1.59A {Entamoeba histolytica} PDB: 3p47_A 3p1b_A
Length = 313
Score = 27.4 bits (61), Expect = 2.1
Identities = 12/67 (17%), Positives = 29/67 (43%), Gaps = 6/67 (8%)
Query: 2 FRKVL---IRRESTPRPSAYKAALVFKLLTDLSQNLQLLSEKARS---TTEFIKRLKSIA 55
RK+ + ++ A+ + KL+ + ++ +++ + +++L SI
Sbjct: 41 LRKIFFPDFFMKHQKITESHIASELTKLVDYIKDSVTAYNDELFAHQCVMAILEKLPSIK 100
Query: 56 DLLNTDL 62
L TDL
Sbjct: 101 RTLKTDL 107
>3opy_B 6-phosphofructo-1-kinase beta-subunit; ATP binding,
fructose-6-phosphate bindi magnesium binding, citrate
binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris}
Length = 941
Score = 27.7 bits (62), Expect = 2.3
Identities = 19/102 (18%), Positives = 39/102 (38%), Gaps = 1/102 (0%)
Query: 24 FKLLTDLSQNLQLLSEKARSTTEFIKRLKSIADLLNT-DLSQNLQLLSEKARSTTEFIKR 82
+ ++S L L E A S ++ + ++++ L D ++ K+ S ++ +K
Sbjct: 52 EEDQNNVSIQLILDPEHAASVSQIDQNIRNLTRSLYRKDWRSIQSNIAFKSSSLSKLVKL 111
Query: 83 LKSIADLLNDNSIEFESQIVAQCDALIKAIEDRKKQLVDAIR 124
LK + + E V D L I + A+
Sbjct: 112 LKDGGHPVQQSPNEISPFEVYTVDPLGSLIGFSGFKNPFAVN 153
>2y7c_A Type-1 restriction enzyme ecoki specificity prote; transferase;
18.00A {Escherichia coli} PDB: 2y7h_A*
Length = 464
Score = 27.1 bits (60), Expect = 3.9
Identities = 10/41 (24%), Positives = 19/41 (46%)
Query: 100 QIVAQCDALIKAIEDRKKQLVDAIRLEKESKQRILREQVSG 140
+IV + + L + +KQ+ +A+ Q IL + G
Sbjct: 380 EIVRRVEQLFAYADTIEKQVNNALARVNNLTQSILAKAFRG 420
>3okg_A Restriction endonuclease S subunits; coiled-coil, type I
methyltransferase, DNA binding, DNA BIND protein; 1.95A
{Thermoanaerobacter tengcongensis}
Length = 412
Score = 25.8 bits (57), Expect = 8.2
Identities = 10/41 (24%), Positives = 18/41 (43%)
Query: 100 QIVAQCDALIKAIEDRKKQLVDAIRLEKESKQRILREQVSG 140
+IVA D + + + K+ + K +Q IL + G
Sbjct: 370 RIVAYLDQIQQQVAALKRAQAETEAELKRLEQAILDKAFRG 410
>2lhk_A L0052; chaperone, type III secretion system; NMR {Escherichia
coli}
Length = 107
Score = 24.8 bits (53), Expect = 9.0
Identities = 16/58 (27%), Positives = 35/58 (60%), Gaps = 4/58 (6%)
Query: 31 SQNLQLLSEKARSTTEFIKRLKSIADLLNTDLSQNLQLLSEKARSTTEFIKRLKSIAD 88
++N +LL +K RS E IK++ + D++ +++ LSEKA++ + ++L + +
Sbjct: 7 TRNKELLDKKIRSEIEAIKKIIAEFDVVK----ESVNELSEKAKTDPQAAEKLNKLIE 60
>1xou_B Z5138 gene product; coiled coil, helix bundle, heterodimer,
structural protein/chaperone complex; 2.80A
{Escherichia coli} SCOP: a.231.1.2
Length = 95
Score = 24.8 bits (53), Expect = 9.6
Identities = 16/58 (27%), Positives = 35/58 (60%), Gaps = 4/58 (6%)
Query: 31 SQNLQLLSEKARSTTEFIKRLKSIADLLNTDLSQNLQLLSEKARSTTEFIKRLKSIAD 88
++N +LL +K RS E IK++ + D++ +++ LSEKA++ + ++L + +
Sbjct: 7 TRNKELLDKKIRSEIEAIKKIIAEFDVVK----ESVNELSEKAKTDPQAAEKLNKLIE 60
>3kbt_A Beta-I spectrin, spectrin beta chain, erythrocyte; complex,
spectrin, spectrin repeat, three helix bundle, ANKY
binding, disease mutation, structural protein, ZU5
sandwich; 2.75A {Homo sapiens} PDB: 3kbu_A
Length = 326
Score = 25.7 bits (56), Expect = 9.8
Identities = 21/110 (19%), Positives = 43/110 (39%), Gaps = 4/110 (3%)
Query: 20 AALVFKLLTDLSQNLQLLSEKARS-TTEFIKRLKSIADLLN--TDLSQNLQLLSEKARST 76
+ + + ++ L L+ EK R + + T +++ LL + +
Sbjct: 216 SYDLHRYFYTGAEILGLIDEKHRELPEDVGLDASTAESFHRVHTAFERDVHLLGVQVQQF 275
Query: 77 TEFIKRLKSIADLLNDNSIEFESQIVAQC-DALIKAIEDRKKQLVDAIRL 125
+ RL++ +I+ + Q V+ AL+ A R+ QLVD
Sbjct: 276 QDVATRLQTAYAGEKAEAIQNKEQEVSAAWQALLDACAGRRTQLVDTADK 325
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.131 0.343
Gapped
Lambda K H
0.267 0.0513 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,316,933
Number of extensions: 125686
Number of successful extensions: 377
Number of sequences better than 10.0: 1
Number of HSP's gapped: 376
Number of HSP's successfully gapped: 39
Length of query: 170
Length of database: 6,701,793
Length adjustment: 87
Effective length of query: 83
Effective length of database: 4,272,666
Effective search space: 354631278
Effective search space used: 354631278
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.1 bits)