RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy11969
         (170 letters)



>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain
           {Fission yeast (Schizosaccharomyces pombe) [TaxId:
           4896]}
          Length = 344

 Score = 33.3 bits (74), Expect = 0.011
 Identities = 15/90 (16%), Positives = 30/90 (33%), Gaps = 2/90 (2%)

Query: 31  SQNLQLLSEKARSTTEFIKRLKSIADLLNTDLSQNLQLLSEKARSTTEFIKRLKSIADL- 89
            ++L+L +            L     +    LS N  + +E AR  +E I   K +    
Sbjct: 7   GKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGN-TIGTEAARWLSENIASKKDLEIAE 65

Query: 90  LNDNSIEFESQIVAQCDALIKAIEDRKKQL 119
            +D         + +   L+     +  +L
Sbjct: 66  FSDIFTGRVKDEIPEALRLLLQALLKCPKL 95


>d1smyd_ e.29.1.2 (D:) RNA-polymerase beta-prime {Thermus
           thermophilus [TaxId: 274]}
          Length = 1504

 Score = 27.4 bits (60), Expect = 1.1
 Identities = 11/57 (19%), Positives = 21/57 (36%)

Query: 38  SEKARSTTEFIKRLKSIADLLNTDLSQNLQLLSEKARSTTEFIKRLKSIADLLNDNS 94
              AR   E I++L    DL   +     ++         +  KRL+ +   L+  +
Sbjct: 450 DIDARMGAEAIQQLLKELDLEALEKELLEEMKHPSRARRAKARKRLEVVRAFLDSGN 506


>d1xoub_ a.231.1.2 (B:) EspA chaperone CesA {Escherichia coli
          [TaxId: 562]}
          Length = 84

 Score = 25.4 bits (55), Expect = 1.5
 Identities = 16/58 (27%), Positives = 35/58 (60%), Gaps = 4/58 (6%)

Query: 31 SQNLQLLSEKARSTTEFIKRLKSIADLLNTDLSQNLQLLSEKARSTTEFIKRLKSIAD 88
          ++N +LL +K RS  E IK++ +  D++     +++  LSEKA++  +  ++L  + +
Sbjct: 6  TRNKELLDKKIRSEIEAIKKIIAEFDVVK----ESVNELSEKAKTDPQAAEKLNKLIE 59


>d1nsca_ b.68.1.1 (A:) Influenza neuraminidase {Influenza B virus,
           different strains [TaxId: 11520]}
          Length = 390

 Score = 26.4 bits (58), Expect = 2.3
 Identities = 12/38 (31%), Positives = 13/38 (34%), Gaps = 5/38 (13%)

Query: 106 DALIKAIEDRKKQLVDAIRLEKESKQRILREQVSGCAC 143
           +ALIK          D           ILR Q S C C
Sbjct: 123 NALIKIKYGEA--YTDTY---HSYANNILRTQESACNC 155


>d2b2ya1 b.34.13.2 (A:108-187) ATP-dependent helicase CHD1 (Chromo
           domain protein 1) {Human (Homo sapiens) [TaxId: 9606]}
          Length = 80

 Score = 23.6 bits (51), Expect = 5.6
 Identities = 8/26 (30%), Positives = 11/26 (42%)

Query: 92  DNSIEFESQIVAQCDALIKAIEDRKK 117
           + S E  + I  +  A I     RKK
Sbjct: 55  ECSWEDGALISKKFQACIDEYFSRKK 80


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.131    0.343 

Gapped
Lambda     K      H
   0.267   0.0499    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 536,565
Number of extensions: 21901
Number of successful extensions: 74
Number of sequences better than 10.0: 1
Number of HSP's gapped: 74
Number of HSP's successfully gapped: 17
Length of query: 170
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 91
Effective length of database: 1,322,926
Effective search space: 120386266
Effective search space used: 120386266
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.6 bits)