BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11975
(786 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3S5N|A Chain A, Crystal Structure Of Human 4-Hydroxy-2-Oxoglutarate
Aldolase
Length = 304
Score = 145 bits (366), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 75/228 (32%), Positives = 123/228 (53%), Gaps = 8/228 (3%)
Query: 517 LLKPQKHTTTRATIDLTQXXXXXXXXXXLILCPYYFQKKMTEDLIYEHFISVADNSPIPV 576
LL +T+AT+++T +++ P Y++ +M+ + H+ VAD SPIPV
Sbjct: 83 LLAGSGCESTQATVEMTVSMAQVGADAAMVVTPCYYRGRMSSAALIHHYTKVADLSPIPV 142
Query: 577 IIYNNTFVTNIDISVDTLVKLAHHENIRGVKDT--DNIKLANMANQTKDLNFSVFXXXXX 634
++Y+ T +D+ VD +V L+ H NI G+KD+ D ++ + ++T+ +F V
Sbjct: 143 VLYSVPANTGLDLPVDAVVTLSQHPNIVGMKDSGGDVTRIGLIVHKTRKQDFQVLAGSAG 202
Query: 635 XXXXXXXXXCAGGINALSAVLGGPICELYDLAKAGKWEEAMKLQHRLVKPDVTVRNVLLM 694
GG+ AL+ VLG +C+L L G+WE+A KLQHRL++P N +
Sbjct: 203 FLMASYALGAVGGVCALANVLGAQVCQLERLCCTGQWEDAQKLQHRLIEP-----NAAVT 257
Query: 695 KEMGVPGVRAAMELYGYYGGRSRRPLPAALKPGGAEKIKQVLTEAGFL 742
+ G+PG++ M+ +GYYGG R PL L P E ++ T G+L
Sbjct: 258 RRFGIPGLKKIMDWFGYYGGPCRAPL-QELSPAEEEALRMDFTSNGWL 304
>pdb|3S5O|A Chain A, Crystal Structure Of Human 4-Hydroxy-2-Oxoglutarate
Aldolase Bound To Pyruvate
Length = 307
Score = 143 bits (360), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 74/228 (32%), Positives = 122/228 (53%), Gaps = 8/228 (3%)
Query: 517 LLKPQKHTTTRATIDLTQXXXXXXXXXXLILCPYYFQKKMTEDLIYEHFISVADNSPIPV 576
LL +T+AT+++T +++ P Y++ +M+ + H+ VAD SPIPV
Sbjct: 86 LLAGSGCESTQATVEMTVSMAQVGADAAMVVTPCYYRGRMSSAALIHHYTKVADLSPIPV 145
Query: 577 IIYNNTFVTNIDISVDTLVKLAHHENIRGVKDT--DNIKLANMANQTKDLNFSVFXXXXX 634
++Y+ T +D+ VD +V L+ H NI G+ D+ D ++ + ++T+ +F V
Sbjct: 146 VLYSVPANTGLDLPVDAVVTLSQHPNIVGMXDSGGDVTRIGLIVHKTRKQDFQVLAGSAG 205
Query: 635 XXXXXXXXXCAGGINALSAVLGGPICELYDLAKAGKWEEAMKLQHRLVKPDVTVRNVLLM 694
GG+ AL+ VLG +C+L L G+WE+A KLQHRL++P N +
Sbjct: 206 FLMASYALGAVGGVCALANVLGAQVCQLERLCCTGQWEDAQKLQHRLIEP-----NAAVT 260
Query: 695 KEMGVPGVRAAMELYGYYGGRSRRPLPAALKPGGAEKIKQVLTEAGFL 742
+ G+PG++ M+ +GYYGG R PL L P E ++ T G+L
Sbjct: 261 RRFGIPGLKKIMDWFGYYGGPCRAPL-QELSPAEEEALRMDFTSNGWL 307
>pdb|1XKY|A Chain A, Crystal Structure Of Dihydrodipicolinate Synthase Dapa-2
(Ba3935) From Bacillus Anthracis At 1.94a Resolution.
pdb|1XKY|B Chain B, Crystal Structure Of Dihydrodipicolinate Synthase Dapa-2
(Ba3935) From Bacillus Anthracis At 1.94a Resolution.
pdb|1XKY|C Chain C, Crystal Structure Of Dihydrodipicolinate Synthase Dapa-2
(Ba3935) From Bacillus Anthracis At 1.94a Resolution.
pdb|1XKY|D Chain D, Crystal Structure Of Dihydrodipicolinate Synthase Dapa-2
(Ba3935) From Bacillus Anthracis At 1.94a Resolution.
pdb|1XL9|A Chain A, Crystal Structure Of Dihydrodipicolinate Synthase Dapa-2
(Ba3935) From Bacillus Anthracis.
pdb|1XL9|B Chain B, Crystal Structure Of Dihydrodipicolinate Synthase Dapa-2
(Ba3935) From Bacillus Anthracis.
pdb|1XL9|C Chain C, Crystal Structure Of Dihydrodipicolinate Synthase Dapa-2
(Ba3935) From Bacillus Anthracis.
pdb|1XL9|D Chain D, Crystal Structure Of Dihydrodipicolinate Synthase Dapa-2
(Ba3935) From Bacillus Anthracis
Length = 301
Score = 90.5 bits (223), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 59/197 (29%), Positives = 106/197 (53%), Gaps = 10/197 (5%)
Query: 526 TRATIDLTQXXXXXXXXXXLILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVT 585
T A+IDLT+ +++ PYY K +++ +Y+HF ++A+++P+PV++YN +
Sbjct: 93 THASIDLTKKATEVGVDAVMLVAPYY--NKPSQEGMYQHFKAIAESTPLPVMLYNVPGRS 150
Query: 586 NIDISVDTLVKLAHHENIRGVKDT--DNIKLANMANQTKDLNFSVFXXXXXXXXXXXXXX 643
+ ISVDT+V+L+ ENI +KD D + + + +T D +F+V+
Sbjct: 151 IVQISVDTVVRLSEIENIVAIKDAGGDVLTMTEIIEKTAD-DFAVYSGDDGLTLPAMAVG 209
Query: 644 CAGGINALSAVLGGPICELYDLAKAGKWEEAMKLQHRLVKPDVTVRNVLLMKEMGVPGVR 703
G ++ S V+G + E+ +AG++++A KL LV+ V + L M P V+
Sbjct: 210 AKGIVSVASHVIGNEMQEMIAAFQAGEFKKAQKLHQLLVR----VTDSLFMAPSPTP-VK 264
Query: 704 AAMELYGYYGGRSRRPL 720
A+++ G G R PL
Sbjct: 265 TALQMVGLDVGSVRLPL 281
>pdb|3HIJ|A Chain A, Crystal Structure Of Dihydrodipicolinate Synthase From
Bacillus Anthracis In Complex With Its Substrate,
Pyruvate
pdb|3HIJ|B Chain B, Crystal Structure Of Dihydrodipicolinate Synthase From
Bacillus Anthracis In Complex With Its Substrate,
Pyruvate
pdb|3HIJ|C Chain C, Crystal Structure Of Dihydrodipicolinate Synthase From
Bacillus Anthracis In Complex With Its Substrate,
Pyruvate
pdb|3HIJ|D Chain D, Crystal Structure Of Dihydrodipicolinate Synthase From
Bacillus Anthracis In Complex With Its Substrate,
Pyruvate
Length = 292
Score = 87.8 bits (216), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 58/197 (29%), Positives = 105/197 (53%), Gaps = 10/197 (5%)
Query: 526 TRATIDLTQXXXXXXXXXXLILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVT 585
T A+IDLT+ +++ PYY K +++ +Y+HF ++A+++P+PV++YN +
Sbjct: 84 THASIDLTKKATEVGVDAVMLVAPYY--NKPSQEGMYQHFKAIAESTPLPVMLYNVPGRS 141
Query: 586 NIDISVDTLVKLAHHENIRGVKDT--DNIKLANMANQTKDLNFSVFXXXXXXXXXXXXXX 643
+ ISVDT+V+L+ ENI + D D + + + +T D +F+V+
Sbjct: 142 IVQISVDTVVRLSEIENIVAIXDAGGDVLTMTEIIEKTAD-DFAVYSGDDGLTLPAMAVG 200
Query: 644 CAGGINALSAVLGGPICELYDLAKAGKWEEAMKLQHRLVKPDVTVRNVLLMKEMGVPGVR 703
G ++ S V+G + E+ +AG++++A KL LV+ V + L M P V+
Sbjct: 201 AKGIVSVASHVIGNEMQEMIAAFQAGEFKKAQKLHQLLVR----VTDSLFMAPSPTP-VK 255
Query: 704 AAMELYGYYGGRSRRPL 720
A+++ G G R PL
Sbjct: 256 TALQMVGLDVGSVRLPL 272
>pdb|3EB2|A Chain A, Crystal Structure Of Dihydrodipicolinate Synthase From
Rhodopseudomonas Palustris At 2.0a Resolution
pdb|3EB2|B Chain B, Crystal Structure Of Dihydrodipicolinate Synthase From
Rhodopseudomonas Palustris At 2.0a Resolution
pdb|3EB2|C Chain C, Crystal Structure Of Dihydrodipicolinate Synthase From
Rhodopseudomonas Palustris At 2.0a Resolution
pdb|3EB2|D Chain D, Crystal Structure Of Dihydrodipicolinate Synthase From
Rhodopseudomonas Palustris At 2.0a Resolution
Length = 300
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 60/205 (29%), Positives = 94/205 (45%), Gaps = 29/205 (14%)
Query: 545 LILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHHENIR 604
L + YF K + I +F ++AD IPV+IY N D+++D + +LA H IR
Sbjct: 104 LAILEAYFPLKDAQ--IESYFRAIADAVEIPVVIYTNPQFQRSDLTLDVIARLAEHPRIR 161
Query: 605 GVKD--TDNIKLANMANQTKDLNFSVFXXXXXXXXXXXXXXCAGGINALSAVLGGPIC-- 660
+KD T+ +L ++ N+ D VF GG+ ++ GP C
Sbjct: 162 YIKDASTNTGRLLSIINRCGD-ALQVFSASAHIPAAVMLI---GGVGWMA----GPACIA 213
Query: 661 -----ELYDLAKAGKWEEAMKLQHRLVKPDVTVRNVLLMKEMGVPGVRAAMELYGYYGGR 715
LY+L KA +W+EA+ LQ +L + N K ++A + L GY G
Sbjct: 214 PRQSVALYELCKAQRWDEALMLQRKLWRV-----NEAFAKFNLAACIKAGLALQGYDVG- 267
Query: 716 SRRPLP--AALKPGGAEKIKQVLTE 738
P+P AAL + +++VL E
Sbjct: 268 --DPIPPQAALTAEERKAVEKVLAE 290
>pdb|3QFE|A Chain A, Crystal Structures Of A Putative Dihydrodipicolinate
Synthase Family Protein From Coccidioides Immitis
pdb|3QFE|B Chain B, Crystal Structures Of A Putative Dihydrodipicolinate
Synthase Family Protein From Coccidioides Immitis
Length = 318
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 50/160 (31%), Positives = 73/160 (45%), Gaps = 4/160 (2%)
Query: 525 TTRATIDLTQXXXXXXXXXXLILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFV 584
+TR ++ L+L P YF K T +I F V+ SP+PV+IYN V
Sbjct: 91 STRQVLEHINDASVAGANYVLVLPPAYFGKATTPPVIKSFFDDVSCQSPLPVVIYNFPGV 150
Query: 585 TN-IDISVDTLVKLAHHE-NIRGVKDTDNI--KLANMANQTKDLNFSVFXXXXXXXXXXX 640
N ID+ D + +A N+ GVK T K+ +A FSVF
Sbjct: 151 CNGIDLDSDMITTIARKNPNVVGVKLTCASVGKITRLAATLPPAAFSVFGGQSDFLIGGL 210
Query: 641 XXXCAGGINALSAVLGGPICELYDLAKAGKWEEAMKLQHR 680
AG I A + V + ++Y+L KAGK ++AM+L +
Sbjct: 211 SVGSAGCIAAFANVFPKTVSKIYELYKAGKVDQAMELHRK 250
>pdb|3H5D|A Chain A, Dihydrodipicolinate Synthase From Drug-Resistant
Streptococc Pneumoniae
pdb|3H5D|B Chain B, Dihydrodipicolinate Synthase From Drug-Resistant
Streptococc Pneumoniae
pdb|3H5D|C Chain C, Dihydrodipicolinate Synthase From Drug-Resistant
Streptococc Pneumoniae
pdb|3H5D|D Chain D, Dihydrodipicolinate Synthase From Drug-Resistant
Streptococc Pneumoniae
Length = 311
Score = 64.3 bits (155), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 54/194 (27%), Positives = 94/194 (48%), Gaps = 15/194 (7%)
Query: 545 LILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHHENIR 604
L + PYY K +++ +Y+HF ++AD S +P+IIYN ++++ +T+++LA H NI
Sbjct: 108 LAIVPYY--NKPSQEGMYQHFKAIADASDLPIIIYNIPGRVVVELTPETMLRLADHPNII 165
Query: 605 GVKDTDNIKLANMAN--QTKDLNFSVFXXXXXXXXXXXXXXCAGGINALSAVLGGPICEL 662
GVK+ + LANMA + K F ++ G I+ S G + E+
Sbjct: 166 GVKECTS--LANMAYLIEHKPEEFLIYTGEDGDAFHAMNLGADGVISVASHTNGDEMHEM 223
Query: 663 YDLAKAGKWEEAMKLQHRLVKPDVTVRNVLLMKEMGVPGVRAAMELYGYYGGRSRRPLPA 722
+ ++A +Q + + P V N L P V+A + G+ G +R P
Sbjct: 224 FTAIAESDMKKAAAIQRKFI-PKV---NALFSYPSPAP-VKAILNYMGFEAGPTRLP--- 275
Query: 723 ALKPGGAEKIKQVL 736
L P E +K+++
Sbjct: 276 -LVPAPEEDVKRII 288
>pdb|3PUD|A Chain A, Crystal Structure Of Dhydrodipicolinate Synthase From
Acinetobacter Baumannii At 2.8a Resolution
pdb|3PUD|B Chain B, Crystal Structure Of Dhydrodipicolinate Synthase From
Acinetobacter Baumannii At 2.8a Resolution
pdb|3PUE|A Chain A, Crystal Structure Of The Complex Of Dhydrodipicolinate
Synthase From Acinetobacter Baumannii With Lysine At
2.6a Resolution
pdb|3PUE|B Chain B, Crystal Structure Of The Complex Of Dhydrodipicolinate
Synthase From Acinetobacter Baumannii With Lysine At
2.6a Resolution
pdb|3PUL|A Chain A, Crystal Structure Of The Complex Of Dhydrodipicolinate
Synthase From Acinetobacter Baumannii With Lysine At
2.3a Resolution
pdb|3PUL|B Chain B, Crystal Structure Of The Complex Of Dhydrodipicolinate
Synthase From Acinetobacter Baumannii With Lysine At
2.3a Resolution
pdb|3RK8|A Chain A, Crystal Structure Of The Chloride Inhibited
Dihydrodipicolinate Synthase From Acinetobacter
Baumannii Complexed With Pyruvate At 1.8 A Resolution
pdb|3RK8|B Chain B, Crystal Structure Of The Chloride Inhibited
Dihydrodipicolinate Synthase From Acinetobacter
Baumannii Complexed With Pyruvate At 1.8 A Resolution
pdb|3TAK|A Chain A, Crystal Structure Of The Complex Of Dhdps From
Acinetobacter Baumannii With Pyruvate At 1.4 A
Resolution
pdb|3TAK|B Chain B, Crystal Structure Of The Complex Of Dhdps From
Acinetobacter Baumannii With Pyruvate At 1.4 A
Resolution
pdb|3TCE|A Chain A, Crystal Structure Of The Complex Of Dihydrodipicolinate
Synthase From Acinetobacter Baumannii With
5-Hydroxylysine At 2.6 A Resolution
pdb|3TCE|B Chain B, Crystal Structure Of The Complex Of Dihydrodipicolinate
Synthase From Acinetobacter Baumannii With
5-Hydroxylysine At 2.6 A Resolution
pdb|3TDF|A Chain A, Crystal Structure Of The Complex Of Dihydrodipicolinate
Synthase From Acinetobacter Baumannii With
2-Ketobutanoic Acid At 1.99 A Resolution
pdb|3TDF|B Chain B, Crystal Structure Of The Complex Of Dihydrodipicolinate
Synthase From Acinetobacter Baumannii With
2-Ketobutanoic Acid At 1.99 A Resolution
pdb|3U8G|A Chain A, Crystal Structure Of The Complex Of Dihydrodipicolinate
Synthase From Acinetobacter Baumannii With Oxalic Acid
At 1.80 A Resolution
pdb|3U8G|B Chain B, Crystal Structure Of The Complex Of Dihydrodipicolinate
Synthase From Acinetobacter Baumannii With Oxalic Acid
At 1.80 A Resolution
pdb|3UQN|A Chain A, Crystal Structure Of Dihydrodipicolinate Synthase From
Acinetobacter Baumannii Complexed With Oxamic Acid At
1.9 Angstrom Resolution
pdb|3UQN|B Chain B, Crystal Structure Of Dihydrodipicolinate Synthase From
Acinetobacter Baumannii Complexed With Oxamic Acid At
1.9 Angstrom Resolution
pdb|4DXV|A Chain A, Crystal Structure Of Dihydrodipicolinate Synthase From
Acinetobacter Baumannii Complexed With Mg And Cl Ions At
1.80 A Resolution
pdb|4DXV|B Chain B, Crystal Structure Of Dihydrodipicolinate Synthase From
Acinetobacter Baumannii Complexed With Mg And Cl Ions At
1.80 A Resolution
Length = 291
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 54/219 (24%), Positives = 100/219 (45%), Gaps = 9/219 (4%)
Query: 525 TTRATIDLTQXXXXXXXXXXLILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFV 584
+TR I+LT+ L++ PYY K T++ +Y+H+ ++A+ +P+I+YN
Sbjct: 81 STREAIELTKAAKDLGADAALLVTPYY--NKPTQEGLYQHYKAIAEAVELPLILYNVPGR 138
Query: 585 TNIDISVDTLVKLAHHENIRGVKD-TDNIKLANMANQTKDLNFSVFXXXXXXXXXXXXXX 643
T +D+S DT V+LA NI G+KD T ++ + +V+
Sbjct: 139 TGVDLSNDTAVRLAEIPNIVGIKDATGDVPRGKALIDALNGKMAVYSGDDETAWELMLLG 198
Query: 644 CAGGINALSAVLGGPICELYDLAKAGKWEEAMKLQHRLVKPDVTVRNVLLMKEMGVPGVR 703
G I+ + + + E+ +A A ++A L +++ + N+L + +P V+
Sbjct: 199 ADGNISVTANIAPKAMSEVCAVAIAKDEQQAKTLNNKIAN----LHNILFCESNPIP-VK 253
Query: 704 AAMELYGYYGGRSRRPLPAALKPGGAEKIKQVLTEAGFL 742
A+ G R PL L E ++ L +AG +
Sbjct: 254 WALHEMGLIDTGIRLPL-TPLAEQYREPLRNALKDAGII 291
>pdb|2VC6|A Chain A, Structure Of Mosa From S. Meliloti With Pyruvate Bound
pdb|2VC6|B Chain B, Structure Of Mosa From S. Meliloti With Pyruvate Bound
Length = 292
Score = 60.5 bits (145), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 54/201 (26%), Positives = 89/201 (44%), Gaps = 10/201 (4%)
Query: 545 LILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHH-ENI 603
LI+ PYY K T++ IY+HF ++ S IP+I+YN + I+I V+TL ++ N+
Sbjct: 100 LIVSPYY--NKPTQEGIYQHFKAIDAASTIPIIVYNIPGRSAIEIHVETLARIFEDCPNV 157
Query: 604 RGVKD-TDNIKLANMANQTKDLNFSVFXXXXXXXXXXXXXXCAGGINALSAVLGGPICEL 662
+GV D T N+ ++ +F++ G I+ + V +
Sbjct: 158 KGVXDATGNLLRPSLERMACGEDFNLLTGEDGTALGYMAHGGHGCISVTANVAPALCADF 217
Query: 663 YDLAKAGKWEEAMKLQHRLVKPDVTVRNVLLMKEMGVPGVRAAMELYGYYGGRSRRPLPA 722
G + A+KLQ RL+ + L E G + A++ G G R PL
Sbjct: 218 QQACLNGDFAAALKLQDRLMP-----LHRALFLETNPAGAKYALQRLGRMRGDLRLPL-V 271
Query: 723 ALKPGGAEKIKQVLTEAGFLV 743
+ P E+I + AG L+
Sbjct: 272 TISPSFQEEIDDAMRHAGILL 292
>pdb|2EHH|A Chain A, Crystal Structure Of Dihydrodipicolinate Synthase From
Aquifex Aeolicus
pdb|2EHH|C Chain C, Crystal Structure Of Dihydrodipicolinate Synthase From
Aquifex Aeolicus
pdb|2EHH|D Chain D, Crystal Structure Of Dihydrodipicolinate Synthase From
Aquifex Aeolicus
pdb|2EHH|E Chain E, Crystal Structure Of Dihydrodipicolinate Synthase From
Aquifex Aeolicus
Length = 294
Score = 59.7 bits (143), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 61/213 (28%), Positives = 94/213 (44%), Gaps = 10/213 (4%)
Query: 526 TRATIDLTQXXXXXXXXXXLILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVT 585
T + LT L++ PYY K T+ +YEHF +VA IP+IIYN T
Sbjct: 81 THEAVHLTAHAKEVGADGALVVVPYY--NKPTQRGLYEHFKTVAQEVDIPIIIYNIPSRT 138
Query: 586 NIDISVDTLVKLAHH-ENIRGVKD-TDNIKLANMANQTKDLNFSVFXXXXXXXXXXXXXX 643
++ISVDT+ KLA ENI K+ T N+ + + +FSV
Sbjct: 139 CVEISVDTMFKLASECENIVASKESTPNMDRISEIVKRLGESFSVLSGDDSLTLPMMALG 198
Query: 644 CAGGINALSAVLGGPICELYDLAKAGKWEEAMKLQHRLVKPDVTVRNVLLMKEMGVPGVR 703
G I+ + V+ + EL A G + A ++ + L + VL ++ +P V+
Sbjct: 199 AKGVISVANNVMPREVKELIRAALEGDFRRAREIHYYLHD----LFKVLFIETNPIP-VK 253
Query: 704 AAMELYGYYGGRSRRPLPAALKPGGAEKIKQVL 736
A + G R PL + P K+++VL
Sbjct: 254 TACWMLGMCEKEFRLPL-TEMSPENENKLREVL 285
>pdb|2A6N|A Chain A, Dihydrodipicolinate Synthase (E. Coli)- Mutant R138a
pdb|2A6N|B Chain B, Dihydrodipicolinate Synthase (E. Coli)- Mutant R138a
Length = 292
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 53/218 (24%), Positives = 96/218 (44%), Gaps = 8/218 (3%)
Query: 526 TRATIDLTQXXXXXXXXXXLILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVT 585
T I LTQ L + PYY + +++ +Y+HF ++A+++ +P I+YN T
Sbjct: 82 TAEAISLTQRFNDSGIVGCLTVTPYY--NRPSQEGLYQHFKAIAEHTDLPQILYNVPSAT 139
Query: 586 NIDISVDTLVKLAHHENIRGVKD-TDNIKLANMANQTKDLNFSVFXXXXXXXXXXXXXXC 644
D+ +T+ +LA +NI G+K+ T N+ N + +F +
Sbjct: 140 GCDLLPETVGRLAKVKNIIGIKEATGNLTRVNQIKELVSDDFVLLSGDDASALDFMQLGG 199
Query: 645 AGGINALSAVLGGPICELYDLAKAGKWEEAMKLQHRLVKPDVTVRNVLLMKEMGVPGVRA 704
G I+ + V + ++ LA G + EA + RL+ + N L ++ +P V+
Sbjct: 200 HGVISVTANVAARDMAQMCKLAAEGHFAEARVINQRLMP----LHNKLFVEPNPIP-VKW 254
Query: 705 AMELYGYYGGRSRRPLPAALKPGGAEKIKQVLTEAGFL 742
A + G + R + G E ++ L AG L
Sbjct: 255 ACKELGLVATDTLRLPMTPITDSGRETVRAALKHAGLL 292
>pdb|1DHP|A Chain A, Dihydrodipicolinate Synthase
pdb|1DHP|B Chain B, Dihydrodipicolinate Synthase
pdb|1YXC|A Chain A, Structure Of E. Coli Dihydrodipicolinate Synthase To 1.9 A
pdb|1YXC|B Chain B, Structure Of E. Coli Dihydrodipicolinate Synthase To 1.9 A
pdb|1YXD|A Chain A, Structure Of E. Coli Dihydrodipicolinate Synthase Bound
With Allosteric Inhibitor (S)-Lysine To 2.0 A
pdb|1YXD|B Chain B, Structure Of E. Coli Dihydrodipicolinate Synthase Bound
With Allosteric Inhibitor (S)-Lysine To 2.0 A
pdb|2ATS|A Chain A, Dihydrodipicolinate Synthase Co-Crystallised With
(S)-Lysine
pdb|2ATS|B Chain B, Dihydrodipicolinate Synthase Co-Crystallised With
(S)-Lysine
Length = 292
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 53/218 (24%), Positives = 96/218 (44%), Gaps = 8/218 (3%)
Query: 526 TRATIDLTQXXXXXXXXXXLILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVT 585
T I LTQ L + PYY + +++ +Y+HF ++A+++ +P I+YN T
Sbjct: 82 TAEAISLTQRFNDSGIVGCLTVTPYY--NRPSQEGLYQHFKAIAEHTDLPQILYNVPSRT 139
Query: 586 NIDISVDTLVKLAHHENIRGVKD-TDNIKLANMANQTKDLNFSVFXXXXXXXXXXXXXXC 644
D+ +T+ +LA +NI G+K+ T N+ N + +F +
Sbjct: 140 GCDLLPETVGRLAKVKNIIGIKEATGNLTRVNQIKELVSDDFVLLSGDDASALDFMQLGG 199
Query: 645 AGGINALSAVLGGPICELYDLAKAGKWEEAMKLQHRLVKPDVTVRNVLLMKEMGVPGVRA 704
G I+ + V + ++ LA G + EA + RL+ + N L ++ +P V+
Sbjct: 200 HGVISVTANVAARDMAQMCKLAAEGHFAEARVINQRLMP----LHNKLFVEPNPIP-VKW 254
Query: 705 AMELYGYYGGRSRRPLPAALKPGGAEKIKQVLTEAGFL 742
A + G + R + G E ++ L AG L
Sbjct: 255 ACKELGLVATDTLRLPMTPITDSGRETVRAALKHAGLL 292
>pdb|2A6L|A Chain A, Dihydrodipicolinate Synthase (E. Coli)- Mutant R138h
pdb|2A6L|B Chain B, Dihydrodipicolinate Synthase (E. Coli)- Mutant R138h
Length = 292
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 53/218 (24%), Positives = 96/218 (44%), Gaps = 8/218 (3%)
Query: 526 TRATIDLTQXXXXXXXXXXLILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVT 585
T I LTQ L + PYY + +++ +Y+HF ++A+++ +P I+YN T
Sbjct: 82 TAEAISLTQRFNDSGIVGCLTVTPYY--NRPSQEGLYQHFKAIAEHTDLPQILYNVPSHT 139
Query: 586 NIDISVDTLVKLAHHENIRGVKD-TDNIKLANMANQTKDLNFSVFXXXXXXXXXXXXXXC 644
D+ +T+ +LA +NI G+K+ T N+ N + +F +
Sbjct: 140 GCDLLPETVGRLAKVKNIIGIKEATGNLTRVNQIKELVSDDFVLLSGDDASALDFMQLGG 199
Query: 645 AGGINALSAVLGGPICELYDLAKAGKWEEAMKLQHRLVKPDVTVRNVLLMKEMGVPGVRA 704
G I+ + V + ++ LA G + EA + RL+ + N L ++ +P V+
Sbjct: 200 HGVISVTANVAARDMAQMCKLAAEGHFAEARVINQRLMP----LHNKLFVEPNPIP-VKW 254
Query: 705 AMELYGYYGGRSRRPLPAALKPGGAEKIKQVLTEAGFL 742
A + G + R + G E ++ L AG L
Sbjct: 255 ACKELGLVATDTLRLPMTPITDSGRETVRAALKHAGLL 292
>pdb|1S5T|A Chain A, Crystal Structure Analysis Of A Mutant Of
Dihydrodipicolinate Synthase--Residue Thr44 To Val44
pdb|1S5T|B Chain B, Crystal Structure Analysis Of A Mutant Of
Dihydrodipicolinate Synthase--Residue Thr44 To Val44
Length = 292
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 53/218 (24%), Positives = 96/218 (44%), Gaps = 8/218 (3%)
Query: 526 TRATIDLTQXXXXXXXXXXLILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVT 585
T I LTQ L + PYY + +++ +Y+HF ++A+++ +P I+YN T
Sbjct: 82 TAEAISLTQRFNDSGIVGCLTVTPYY--NRPSQEGLYQHFKAIAEHTDLPQILYNVPSRT 139
Query: 586 NIDISVDTLVKLAHHENIRGVKD-TDNIKLANMANQTKDLNFSVFXXXXXXXXXXXXXXC 644
D+ +T+ +LA +NI G+K+ T N+ N + +F +
Sbjct: 140 GCDLLPETVGRLAKVKNIIGIKEATGNLTRVNQIKELVSDDFVLLSGDDASALDFMQLGG 199
Query: 645 AGGINALSAVLGGPICELYDLAKAGKWEEAMKLQHRLVKPDVTVRNVLLMKEMGVPGVRA 704
G I+ + V + ++ LA G + EA + RL+ + N L ++ +P V+
Sbjct: 200 HGVISVTANVAARDMAQMCKLAAEGHFAEARVINQRLMP----LHNKLFVEPNPIP-VKW 254
Query: 705 AMELYGYYGGRSRRPLPAALKPGGAEKIKQVLTEAGFL 742
A + G + R + G E ++ L AG L
Sbjct: 255 ACKELGLVATDTLRLPMTPITDSGRETVRAALKHAGLL 292
>pdb|3I7Q|A Chain A, Dihydrodipicolinate Synthase Mutant - K161a
pdb|3I7Q|B Chain B, Dihydrodipicolinate Synthase Mutant - K161a
pdb|3I7R|A Chain A, Dihydrodipicolinate Synthase - K161r
pdb|3I7R|B Chain B, Dihydrodipicolinate Synthase - K161r
pdb|3I7S|A Chain A, Dihydrodipicolinate Synthase Mutant - K161a - With The
Substrate Pyruvate Bound In The Active Site.
pdb|3I7S|B Chain B, Dihydrodipicolinate Synthase Mutant - K161a - With The
Substrate Pyruvate Bound In The Active Site
Length = 292
Score = 56.2 bits (134), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 52/218 (23%), Positives = 96/218 (44%), Gaps = 8/218 (3%)
Query: 526 TRATIDLTQXXXXXXXXXXLILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVT 585
T I LTQ L + PYY + +++ +Y+HF ++A+++ +P I+YN T
Sbjct: 82 TAEAISLTQRFNDSGIVGCLTVTPYY--NRPSQEGLYQHFKAIAEHTDLPQILYNVPSRT 139
Query: 586 NIDISVDTLVKLAHHENIRGVKD-TDNIKLANMANQTKDLNFSVFXXXXXXXXXXXXXXC 644
D+ +T+ +LA +NI G+++ T N+ N + +F +
Sbjct: 140 GCDLLPETVGRLAKVKNIIGIREATGNLTRVNQIKELVSDDFVLLSGDDASALDFMQLGG 199
Query: 645 AGGINALSAVLGGPICELYDLAKAGKWEEAMKLQHRLVKPDVTVRNVLLMKEMGVPGVRA 704
G I+ + V + ++ LA G + EA + RL+ + N L ++ +P V+
Sbjct: 200 HGVISVTANVAARDMAQMCKLAAEGHFAEARVINQRLMP----LHNKLFVEPNPIP-VKW 254
Query: 705 AMELYGYYGGRSRRPLPAALKPGGAEKIKQVLTEAGFL 742
A + G + R + G E ++ L AG L
Sbjct: 255 ACKELGLVATDTLRLPMTPITDSGRETVRAALKHAGLL 292
>pdb|1S5W|A Chain A, Crystal Structure Analysis Of A Mutant Of
Dihydrodipicolinate Synthase--Residue Tyr133 To Phe133
pdb|1S5W|B Chain B, Crystal Structure Analysis Of A Mutant Of
Dihydrodipicolinate Synthase--Residue Tyr133 To Phe133
Length = 292
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/218 (23%), Positives = 96/218 (44%), Gaps = 8/218 (3%)
Query: 526 TRATIDLTQXXXXXXXXXXLILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVT 585
T I LTQ L + PYY + +++ +Y+HF ++A+++ +P I++N T
Sbjct: 82 TAEAISLTQRFNDSGIVGCLTVTPYY--NRPSQEGLYQHFKAIAEHTDLPQILFNVPSRT 139
Query: 586 NIDISVDTLVKLAHHENIRGVKD-TDNIKLANMANQTKDLNFSVFXXXXXXXXXXXXXXC 644
D+ +T+ +LA +NI G+K+ T N+ N + +F +
Sbjct: 140 GCDLLPETVGRLAKVKNIIGIKEATGNLTRVNQIKELVSDDFVLLSGDDASALDFMQLGG 199
Query: 645 AGGINALSAVLGGPICELYDLAKAGKWEEAMKLQHRLVKPDVTVRNVLLMKEMGVPGVRA 704
G I+ + V + ++ LA G + EA + RL+ + N L ++ +P V+
Sbjct: 200 HGVISVTANVAARDMAQMCKLAAEGHFAEARVINQRLMP----LHNKLFVEPNPIP-VKW 254
Query: 705 AMELYGYYGGRSRRPLPAALKPGGAEKIKQVLTEAGFL 742
A + G + R + G E ++ L AG L
Sbjct: 255 ACKELGLVATDTLRLPMTPITDSGRETVRAALKHAGLL 292
>pdb|1S5V|A Chain A, Crystal Structure Analysis Of A Mutant Of
Dihydrodipicolinate Synthase--Residue Tyr107 To Phe107
pdb|1S5V|B Chain B, Crystal Structure Analysis Of A Mutant Of
Dihydrodipicolinate Synthase--Residue Tyr107 To Phe107
Length = 292
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/218 (23%), Positives = 96/218 (44%), Gaps = 8/218 (3%)
Query: 526 TRATIDLTQXXXXXXXXXXLILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVT 585
T I LTQ L + PY+ + +++ +Y+HF ++A+++ +P I+YN T
Sbjct: 82 TAEAISLTQRFNDSGIVGCLTVTPYF--NRPSQEGLYQHFKAIAEHTDLPQILYNVPSRT 139
Query: 586 NIDISVDTLVKLAHHENIRGVKD-TDNIKLANMANQTKDLNFSVFXXXXXXXXXXXXXXC 644
D+ +T+ +LA +NI G+K+ T N+ N + +F +
Sbjct: 140 GCDLLPETVGRLAKVKNIIGIKEATGNLTRVNQIKELVSDDFVLLSGDDASALDFMQLGG 199
Query: 645 AGGINALSAVLGGPICELYDLAKAGKWEEAMKLQHRLVKPDVTVRNVLLMKEMGVPGVRA 704
G I+ + V + ++ LA G + EA + RL+ + N L ++ +P V+
Sbjct: 200 HGVISVTANVAARDMAQMCKLAAEGHFAEARVINQRLMP----LHNKLFVEPNPIP-VKW 254
Query: 705 AMELYGYYGGRSRRPLPAALKPGGAEKIKQVLTEAGFL 742
A + G + R + G E ++ L AG L
Sbjct: 255 ACKELGLVATDTLRLPMTPITDSGRETVRAALKHAGLL 292
>pdb|2PUR|A Chain A, Structure Of Dihydrodipicolinate Synthase Mutant Thr44ser
At 1.7 A.
pdb|2PUR|B Chain B, Structure Of Dihydrodipicolinate Synthase Mutant Thr44ser
At 1.7 A
Length = 292
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 52/218 (23%), Positives = 95/218 (43%), Gaps = 8/218 (3%)
Query: 526 TRATIDLTQXXXXXXXXXXLILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVT 585
T I LTQ L + PYY + +++ +Y+HF ++A+++ +P I+YN T
Sbjct: 82 TAEAISLTQRFNDSGIVGCLTVTPYY--NRPSQEGLYQHFKAIAEHTDLPQILYNVPSRT 139
Query: 586 NIDISVDTLVKLAHHENIRGVKD-TDNIKLANMANQTKDLNFSVFXXXXXXXXXXXXXXC 644
D+ +T+ +LA +NI G+ + T N+ N + +F +
Sbjct: 140 GCDLLPETVGRLAKVKNIIGIXEATGNLTRVNQIKELVSDDFVLLSGDDASALDFMQLGG 199
Query: 645 AGGINALSAVLGGPICELYDLAKAGKWEEAMKLQHRLVKPDVTVRNVLLMKEMGVPGVRA 704
G I+ + V + ++ LA G + EA + RL+ + N L ++ +P V+
Sbjct: 200 HGVISVTANVAARDMAQMCKLAAEGHFAEARVINQRLMP----LHNKLFVEPNPIP-VKW 254
Query: 705 AMELYGYYGGRSRRPLPAALKPGGAEKIKQVLTEAGFL 742
A + G + R + G E ++ L AG L
Sbjct: 255 ACKELGLVATDTLRLPMTPITDSGRETVRAALKHAGLL 292
>pdb|3C0J|A Chain A, Structure Of E. Coli Dihydrodipicolinate Synthase
Complexed With Hydroxypyruvate
pdb|3C0J|B Chain B, Structure Of E. Coli Dihydrodipicolinate Synthase
Complexed With Hydroxypyruvate
pdb|3DU0|A Chain A, E. Coli Dihydrodipicolinate Synthase With First Substrate,
Pyruvate, Bound In Active Site
pdb|3DU0|B Chain B, E. Coli Dihydrodipicolinate Synthase With First Substrate,
Pyruvate, Bound In Active Site
pdb|4EOU|A Chain A, Crystal Structure Of E. Coli Dihydrodipicolinate Synthase
With Pyruvate And Succinic Semi-Aldehyde Bound In Active
Site
pdb|4EOU|B Chain B, Crystal Structure Of E. Coli Dihydrodipicolinate Synthase
With Pyruvate And Succinic Semi-Aldehyde Bound In Active
Site
Length = 292
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 52/218 (23%), Positives = 95/218 (43%), Gaps = 8/218 (3%)
Query: 526 TRATIDLTQXXXXXXXXXXLILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVT 585
T I LTQ L + PYY + +++ +Y+HF ++A+++ +P I+YN T
Sbjct: 82 TAEAISLTQRFNDSGIVGCLTVTPYY--NRPSQEGLYQHFKAIAEHTDLPQILYNVPSRT 139
Query: 586 NIDISVDTLVKLAHHENIRGVKD-TDNIKLANMANQTKDLNFSVFXXXXXXXXXXXXXXC 644
D+ +T+ +LA +NI G+ + T N+ N + +F +
Sbjct: 140 GCDLLPETVGRLAKVKNIIGIXEATGNLTRVNQIKELVSDDFVLLSGDDASALDFMQLGG 199
Query: 645 AGGINALSAVLGGPICELYDLAKAGKWEEAMKLQHRLVKPDVTVRNVLLMKEMGVPGVRA 704
G I+ + V + ++ LA G + EA + RL+ + N L ++ +P V+
Sbjct: 200 HGVISVTANVAARDMAQMCKLAAEGHFAEARVINQRLMP----LHNKLFVEPNPIP-VKW 254
Query: 705 AMELYGYYGGRSRRPLPAALKPGGAEKIKQVLTEAGFL 742
A + G + R + G E ++ L AG L
Sbjct: 255 ACKELGLVATDTLRLPMTPITDSGRETVRAALKHAGLL 292
>pdb|2OJP|A Chain A, The Crystal Structure Of A Dimeric Mutant Of
Dihydrodipicolinate Synthase From E.Coli- Dhdps-L197y
pdb|2OJP|B Chain B, The Crystal Structure Of A Dimeric Mutant Of
Dihydrodipicolinate Synthase From E.Coli- Dhdps-L197y
Length = 292
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 52/218 (23%), Positives = 95/218 (43%), Gaps = 8/218 (3%)
Query: 526 TRATIDLTQXXXXXXXXXXLILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVT 585
T I LTQ L + PYY + +++ +Y+HF ++A+++ +P I+YN T
Sbjct: 82 TAEAISLTQRFNDSGIVGCLTVTPYY--NRPSQEGLYQHFKAIAEHTDLPQILYNVPSRT 139
Query: 586 NIDISVDTLVKLAHHENIRGVKD-TDNIKLANMANQTKDLNFSVFXXXXXXXXXXXXXXC 644
D+ +T+ +LA +NI G+ + T N+ N + +F +
Sbjct: 140 GCDLLPETVGRLAKVKNIIGIXEATGNLTRVNQIKELVSDDFVLLSGDDASALDFMQYGG 199
Query: 645 AGGINALSAVLGGPICELYDLAKAGKWEEAMKLQHRLVKPDVTVRNVLLMKEMGVPGVRA 704
G I+ + V + ++ LA G + EA + RL+ + N L ++ +P V+
Sbjct: 200 HGVISVTANVAARDMAQMCKLAAEGHFAEARVINERLMP----LHNKLFVEPNPIP-VKW 254
Query: 705 AMELYGYYGGRSRRPLPAALKPGGAEKIKQVLTEAGFL 742
A + G + R + G E ++ L AG L
Sbjct: 255 ACKELGLVATDTLRLPMTPITDSGRETVRAALKHAGLL 292
>pdb|3FLU|A Chain A, Crystal Structure Of Dihydrodipicolinate Synthase From The
Pathogen Neisseria Meningitidis
pdb|3FLU|B Chain B, Crystal Structure Of Dihydrodipicolinate Synthase From The
Pathogen Neisseria Meningitidis
pdb|3FLU|C Chain C, Crystal Structure Of Dihydrodipicolinate Synthase From The
Pathogen Neisseria Meningitidis
pdb|3FLU|D Chain D, Crystal Structure Of Dihydrodipicolinate Synthase From The
Pathogen Neisseria Meningitidis
Length = 297
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 54/98 (55%), Gaps = 7/98 (7%)
Query: 526 TRATIDLTQXXXXXXXXXXLILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVT 585
T I L+Q L + PYY K +++ IY+HF ++A+ + IP+IIYN T
Sbjct: 88 TVEAIALSQAAEKAGADYTLSVVPYY--NKPSQEGIYQHFKTIAEATSIPMIIYNVPGRT 145
Query: 586 NIDISVDTLVKLAHHENIRGVKDT-----DNIKLANMA 618
+ ++ DT+++LA NI GVK+ NI+L N A
Sbjct: 146 VVSMTNDTILRLAEIPNIVGVKEASGNIGSNIELINRA 183
>pdb|1O5K|A Chain A, Crystal Structure Of Dihydrodipicolinate Synthase (Tm1521)
From Thermotoga Maritima At 1.80 A Resolution
pdb|1O5K|B Chain B, Crystal Structure Of Dihydrodipicolinate Synthase (Tm1521)
From Thermotoga Maritima At 1.80 A Resolution
Length = 306
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 57/229 (24%), Positives = 109/229 (47%), Gaps = 23/229 (10%)
Query: 524 TTTRATIDLTQXXXXXXXXXXLILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTF 583
+T T+ L + L++ PYY K T++ +Y+H+ +++ + + +++YN
Sbjct: 91 NSTEKTLKLVKQAEKLGANGVLVVTPYY--NKPTQEGLYQHYKYISERTDLGIVVYNVPG 148
Query: 584 VTNIDISVDTLVKLAHH-ENIRGVK----DTDNI-KLANMANQTKDLNFSVFXXXXXXXX 637
T +++ +T ++A +N+ G+ D D I + ++ Q + S F
Sbjct: 149 RTGVNVLPETAARIAADLKNVVGIXEANPDIDQIDRTVSLTKQAR----SDFMVWSGNDD 204
Query: 638 XXXXXXCAGG---INALSAVLGGPICELYDLAKAGKWEEAMKLQHRLVKPDVTVRNVLLM 694
CAGG I+ +S V + EL +G E++ ++ HR ++P + L +
Sbjct: 205 RTFYLLCAGGDGVISVVSNVAPKQMVELCAEYFSGNLEKSREV-HRKLRP---LMKALFV 260
Query: 695 KEMGVPGVRAAMELYGYYGGRSRRPL-PAALKPGGAEKIKQVLTEAGFL 742
+ +P V+AA+ L G+ R PL PA+ K E ++ VL E+G L
Sbjct: 261 ETNPIP-VKAALNLMGFIENELRLPLVPASEKT--VELLRNVLKESGLL 306
>pdb|3PB0|A Chain A, Characterisation Of The First Monomeric
Dihydrodipicolinate Synthase Variant Reveals
Evolutionary Insights
pdb|3PB0|B Chain B, Characterisation Of The First Monomeric
Dihydrodipicolinate Synthase Variant Reveals
Evolutionary Insights
pdb|3PB0|C Chain C, Characterisation Of The First Monomeric
Dihydrodipicolinate Synthase Variant Reveals
Evolutionary Insights
pdb|3PB0|D Chain D, Characterisation Of The First Monomeric
Dihydrodipicolinate Synthase Variant Reveals
Evolutionary Insights
Length = 300
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 56/225 (24%), Positives = 109/225 (48%), Gaps = 17/225 (7%)
Query: 525 TTRATIDLTQXXXXXXXXXXLILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFV 584
+T T+ L + L++ PYY K T++ +Y+H+ +++ + + +++YN
Sbjct: 86 STEKTLKLVKQAEKLGANGVLVVTPYY--NKPTQEGLYQHYKYISERTDLGIVVYNVPGR 143
Query: 585 TNIDISVDTLVKLAHH-ENIRGVKDTD--NIKLANMANQTKDLNFSVFXXXXXXXXXXXX 641
T +++ +T ++A +N+ G+K+ + ++ + TK S F
Sbjct: 144 TGVNVLPETAARIAADLKNVVGIKEANPAAAQIDRTVSLTKQAR-SDFMVWSGNDDRTFY 202
Query: 642 XXCAGG---INALSAVLGGPICELYDLAKAGKWEEAMKLQHRLVKPDVTVRNVLLMKEMG 698
CAGG I+ +S V + EL +G E++ ++ HR ++P + L ++
Sbjct: 203 LLCAGGDGVISVVSNVAPKQMVELCAEYFSGNLEKSREV-HRKLRP---LMKALFVETNP 258
Query: 699 VPGVRAAMELYGYYGGRSRRPL-PAALKPGGAEKIKQVLTEAGFL 742
+P V+AA+ L G+ R PL PA+ K E ++ VL E+G L
Sbjct: 259 IP-VKAALNLMGFIENELRLPLVPASEKT--VELLRNVLKESGLL 300
>pdb|3PB2|A Chain A, Characterisation Of The First Monomeric
Dihydrodipicolinate Synthase Variant Reveals
Evolutionary Insights
pdb|3PB2|B Chain B, Characterisation Of The First Monomeric
Dihydrodipicolinate Synthase Variant Reveals
Evolutionary Insights
pdb|3PB2|C Chain C, Characterisation Of The First Monomeric
Dihydrodipicolinate Synthase Variant Reveals
Evolutionary Insights
pdb|3PB2|D Chain D, Characterisation Of The First Monomeric
Dihydrodipicolinate Synthase Variant Reveals
Evolutionary Insights
pdb|3PB2|E Chain E, Characterisation Of The First Monomeric
Dihydrodipicolinate Synthase Variant Reveals
Evolutionary Insights
pdb|3PB2|F Chain F, Characterisation Of The First Monomeric
Dihydrodipicolinate Synthase Variant Reveals
Evolutionary Insights
Length = 300
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 57/228 (25%), Positives = 109/228 (47%), Gaps = 23/228 (10%)
Query: 525 TTRATIDLTQXXXXXXXXXXLILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFV 584
+T T+ L + L++ PYY K T++ +Y+H+ +++ + + +++YN
Sbjct: 86 STEKTLKLVKQAEKLGANGVLVVTPYY--NKPTQEGLYQHYKYISERTDLGIVVYNVPGR 143
Query: 585 TNIDISVDTLVKLAHH-ENIRGVK----DTDNI-KLANMANQTKDLNFSVFXXXXXXXXX 638
T +++ +T ++A +N+ G+K D D I + ++ Q + S F
Sbjct: 144 TGVNVLPETAARIAADLKNVVGIKEANPDIDQIDRTVSLTKQAR----SDFMVWSGNDDR 199
Query: 639 XXXXXCAGG---INALSAVLGGPICELYDLAKAGKWEEAMKLQHRLVKPDVTVRNVLLMK 695
CAGG I+ +S V + EL +G E++ ++ +L +P + L ++
Sbjct: 200 TFYLLCAGGDGVISVVSNVAPKQMVELCAEYFSGNLEKSAEVHAKL-RP---LMKALFVE 255
Query: 696 EMGVPGVRAAMELYGYYGGRSRRPL-PAALKPGGAEKIKQVLTEAGFL 742
+P V+AA+ L G+ R PL PA+ K E ++ VL E+G L
Sbjct: 256 TNPIP-VKAALNLMGFIENELRLPLVPASEKT--VELLRNVLKESGLL 300
>pdb|3DEN|A Chain A, Structure Of E. Coli Dhdps Mutant Y107w
pdb|3DEN|B Chain B, Structure Of E. Coli Dhdps Mutant Y107w
Length = 292
Score = 53.5 bits (127), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 51/218 (23%), Positives = 95/218 (43%), Gaps = 8/218 (3%)
Query: 526 TRATIDLTQXXXXXXXXXXLILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVT 585
T I LTQ L + PY+ + +++ +Y+HF ++A+++ +P I+YN T
Sbjct: 82 TAEAISLTQRFNDSGIVGCLTVTPYW--NRPSQEGLYQHFKAIAEHTDLPQILYNVPSRT 139
Query: 586 NIDISVDTLVKLAHHENIRGVKD-TDNIKLANMANQTKDLNFSVFXXXXXXXXXXXXXXC 644
D+ +T+ +LA +NI G+ + T N+ N + +F +
Sbjct: 140 GCDLLPETVGRLAKVKNIIGIXEATGNLTRVNQIKELVSDDFVLLSGDDASALDFMQLGG 199
Query: 645 AGGINALSAVLGGPICELYDLAKAGKWEEAMKLQHRLVKPDVTVRNVLLMKEMGVPGVRA 704
G I+ + V + ++ LA G + EA + RL+ + N L ++ +P V+
Sbjct: 200 HGVISVTANVAARDMAQMCKLAAEGHFAEARVINQRLMP----LHNKLFVEPNPIP-VKW 254
Query: 705 AMELYGYYGGRSRRPLPAALKPGGAEKIKQVLTEAGFL 742
A + G + R + G E ++ L AG L
Sbjct: 255 ACKELGLVATDTLRLPMTPITDSGRETVRAALKHAGLL 292
>pdb|3G0S|A Chain A, Dihydrodipicolinate Synthase From Salmonella Typhimurium
Lt2
pdb|3G0S|B Chain B, Dihydrodipicolinate Synthase From Salmonella Typhimurium
Lt2
Length = 316
Score = 53.1 bits (126), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 51/218 (23%), Positives = 96/218 (44%), Gaps = 8/218 (3%)
Query: 526 TRATIDLTQXXXXXXXXXXLILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVT 585
T I LTQ L + PYY + T++ +++HF ++A+++ +P I+YN T
Sbjct: 106 TAEAISLTQRFNDSGIVGCLTVTPYY--NRPTQEGLFQHFKAIAEHTDLPQILYNVPSRT 163
Query: 586 NIDISVDTLVKLAHHENIRGVKD-TDNIKLANMANQTKDLNFSVFXXXXXXXXXXXXXXC 644
D+ +T+ +LA +NI +K+ T N+ + + +F +
Sbjct: 164 GCDMLPETVGRLAEIKNIIAIKEATGNLTRVHQIKELVSDDFILLSGDDASALDFMQLGG 223
Query: 645 AGGINALSAVLGGPICELYDLAKAGKWEEAMKLQHRLVKPDVTVRNVLLMKEMGVPGVRA 704
G I+ + V + ++ LA G++ EA + RL+ + N L ++ +P V+
Sbjct: 224 HGVISVTANVAAREMADMCKLAAEGQFAEARAINQRLMP----LHNKLFVEPNPIP-VKW 278
Query: 705 AMELYGYYGGRSRRPLPAALKPGGAEKIKQVLTEAGFL 742
A + G + R + G + +K L AG L
Sbjct: 279 ACKALGLVATDTLRLPMTPITDHGRDIVKAALQHAGLL 316
>pdb|3IRD|A Chain A, Structure Of Dihydrodipicolinate Synthase From Clostridium
Botulinum
Length = 291
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 59/202 (29%), Positives = 89/202 (44%), Gaps = 20/202 (9%)
Query: 526 TRATIDLTQXXXXXXXXXXLILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVT 585
T A+I +++ L++ PYY K T+ + +HF +V+D P+IIYN T
Sbjct: 82 TAASIAMSKWAESIGVDGLLVITPYY--NKTTQKGLVKHFKAVSDAVSTPIIIYNVPGRT 139
Query: 586 NIDISVDTLVKLAHHENIRGVKDTDNIKLANMANQTKDLNFSVFXXXXXXXXXXXXXXCA 645
++I+ TL +L +NI VK+ ++ +A Q K L
Sbjct: 140 GLNITPGTLKELCEDKNIVAVKEASG-NISQIA-QIKALCGDKLDIYSGNDDQIIPILAL 197
Query: 646 GGINALSAVLGGPI-------CELYDLAKAGKWEEAMKLQHRLVKPDVTVRNVLLMKEMG 698
GGI +S VL I CELY GK EA+K+Q + + N L ++
Sbjct: 198 GGIGVIS-VLANVIPEDVHNMCELY---LNGKVNEALKIQL----DSLALTNALFIETNP 249
Query: 699 VPGVRAAMELYGYYGGRSRRPL 720
+P V+ AM L G R PL
Sbjct: 250 IP-VKTAMNLMNMKVGDLRLPL 270
>pdb|2R8W|A Chain A, The Crystal Structure Of Dihydrodipicolinate Synthase
(Atu0899) From Agrobacterium Tumefaciens Str. C58
pdb|2R8W|B Chain B, The Crystal Structure Of Dihydrodipicolinate Synthase
(Atu0899) From Agrobacterium Tumefaciens Str. C58
Length = 332
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/153 (31%), Positives = 70/153 (45%), Gaps = 21/153 (13%)
Query: 556 MTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVK-----DTD 610
+T++ Y HF +VA + +P+ IYNN T S + LV+LA+ NIR +K D D
Sbjct: 143 LTQEEAYHHFAAVAGATALPLAIYNNPTTTRFTFSDELLVRLAYIPNIRAIKXPLPADAD 202
Query: 611 NI-KLANMANQTKDLNFSVFXXXXXXXXXXXXXXCAGGINALSAVLG---GPICELYDLA 666
+LA + + D +F++ AGG S V G P +L A
Sbjct: 203 YAGELARLRPKLSD-DFAI---GYSGDWGCTDATLAGGDTWYSVVAGLLPVPALQLXRAA 258
Query: 667 KAGKWEEAMKLQHRLVKPDVTVRNV-LLMKEMG 698
+AG EEA +L D T + + L KE G
Sbjct: 259 QAGNAEEAKRL-------DATFQPLWALFKEFG 284
>pdb|3A5F|A Chain A, High-Resolution Structure Of Dhdps From Clostridium
Botulinum In Complex With Pyruvate
pdb|3A5F|B Chain B, High-Resolution Structure Of Dhdps From Clostridium
Botulinum In Complex With Pyruvate
Length = 291
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 58/202 (28%), Positives = 88/202 (43%), Gaps = 20/202 (9%)
Query: 526 TRATIDLTQXXXXXXXXXXLILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVT 585
T A+I +++ L++ PYY K T+ + +HF +V+D P+IIYN T
Sbjct: 82 TAASIAMSKWAESIGVDGLLVITPYY--NKTTQKGLVKHFKAVSDAVSTPIIIYNVPGRT 139
Query: 586 NIDISVDTLVKLAHHENIRGVKDTDNIKLANMANQTKDLNFSVFXXXXXXXXXXXXXXCA 645
++I+ TL +L +NI V + ++ +A Q K L
Sbjct: 140 GLNITPGTLKELCEDKNIVAVXEASG-NISQIA-QIKALCGDKLDIYSGNDDQIIPILAL 197
Query: 646 GGINALSAVLGGPI-------CELYDLAKAGKWEEAMKLQHRLVKPDVTVRNVLLMKEMG 698
GGI +S VL I CELY GK EA+K+Q + + N L ++
Sbjct: 198 GGIGVIS-VLANVIPEDVHNMCELY---LNGKVNEALKIQL----DSLALTNALFIETNP 249
Query: 699 VPGVRAAMELYGYYGGRSRRPL 720
+P V+ AM L G R PL
Sbjct: 250 IP-VKTAMNLMNMKVGDLRLPL 270
>pdb|3QZE|A Chain A, Crystal Structure Of Dapa (Pa1010) At 1.6 A Resolution
pdb|3QZE|B Chain B, Crystal Structure Of Dapa (Pa1010) At 1.6 A Resolution
pdb|3QZE|C Chain C, Crystal Structure Of Dapa (Pa1010) At 1.6 A Resolution
pdb|3QZE|D Chain D, Crystal Structure Of Dapa (Pa1010) At 1.6 A Resolution
Length = 314
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 57/106 (53%), Gaps = 3/106 (2%)
Query: 525 TTRATIDLTQXXXXXXXXXXLILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFV 584
+TR + LT+ L++ PYY K T++ +Y+HF +A+ IP I+YN
Sbjct: 103 STREAVALTEAAKSGGADACLLVTPYY--NKPTQEGMYQHFRHIAEAVAIPQILYNVPGR 160
Query: 585 TNIDISVDTLVKLAHHENIRGVKD-TDNIKLANMANQTKDLNFSVF 629
T+ D+ +T+ +L+ NI G+K+ T +++ A + +F V+
Sbjct: 161 TSCDMLPETVERLSKVPNIIGIKEATGDLQRAKEVIERVGKDFLVY 206
>pdb|3NOE|A Chain A, Crystal Structure Of Dihydrodipicolinate Synthase From
Pseudomonas Aeruginosa
pdb|3NOE|B Chain B, Crystal Structure Of Dihydrodipicolinate Synthase From
Pseudomonas Aeruginosa
pdb|3PS7|A Chain A, Biochemical Studies And Crystal Structure Determination Of
Dihydrodipicolinate Synthase From Pseudomonas Aeruginosa
pdb|3PS7|B Chain B, Biochemical Studies And Crystal Structure Determination Of
Dihydrodipicolinate Synthase From Pseudomonas Aeruginosa
pdb|3PUO|A Chain A, Crystal Structure Of Dihydrodipicolinate Synthase From
Pseudomonas Aeruginosa(Psdhdps)complexed With L-Lysine
At 2.65a Resolution
pdb|3PUO|B Chain B, Crystal Structure Of Dihydrodipicolinate Synthase From
Pseudomonas Aeruginosa(Psdhdps)complexed With L-Lysine
At 2.65a Resolution
pdb|3S8H|A Chain A, Structure Of Dihydrodipicolinate Synthase Complexed With
3- Hydroxypropanoic Acid(Hpa)at 2.70 A Resolution
pdb|3S8H|B Chain B, Structure Of Dihydrodipicolinate Synthase Complexed With
3- Hydroxypropanoic Acid(Hpa)at 2.70 A Resolution
Length = 292
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 57/106 (53%), Gaps = 3/106 (2%)
Query: 525 TTRATIDLTQXXXXXXXXXXLILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFV 584
+TR + LT+ L++ PYY K T++ +Y+HF +A+ IP I+YN
Sbjct: 81 STREAVALTEAAKSGGADACLLVTPYY--NKPTQEGMYQHFRHIAEAVAIPQILYNVPGR 138
Query: 585 TNIDISVDTLVKLAHHENIRGVKD-TDNIKLANMANQTKDLNFSVF 629
T+ D+ +T+ +L+ NI G+K+ T +++ A + +F V+
Sbjct: 139 TSCDMLPETVERLSKVPNIIGIKEATGDLQRAKEVIERVGKDFLVY 184
>pdb|2PCQ|A Chain A, Crystal Structure Of Putative Dihydrodipicolinate Synthase
(Ttha0737) From Thermus Thermophilus Hb8
Length = 283
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 77/175 (44%), Gaps = 11/175 (6%)
Query: 549 PYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKD 608
P Y+ + L+ ++ ++A+ P+ +Y+ T +D+ ++ + LA H N+ G+KD
Sbjct: 97 PRYYHGSLGAGLL-RYYEALAEKXPL--FLYHVPQNTKVDLPLEAVEALAPHPNVLGIKD 153
Query: 609 TDNIKLANMA-NQTKDLNFSVFXXXXXXXXXXXXXXCAGGINALSAVLGGPICELYDLAK 667
+ L+ +A Q + F V+ GGI A + + L D +
Sbjct: 154 SSG-DLSRIAFYQARLQEFRVYTGHAPTFLGALALGAEGGILAAANLAPRAYRALLDHFR 212
Query: 668 AGKWEEAMKLQHRLVKPDVTVRNVLLMKEMGVPGVRAAMELYGYYGGRSRRPLPA 722
G+ EA +LQ +L L+ + GVP ++ A+ G G R P PA
Sbjct: 213 EGRLAEAQELQKKLFPLGD------LLAKGGVPLLKQALRHLGLPAGYPRPPYPA 261
>pdb|2RFG|A Chain A, Crystal Structure Of Dihydrodipicolinate Synthase From
Hahella Chejuensis At 1.5a Resolution
pdb|2RFG|B Chain B, Crystal Structure Of Dihydrodipicolinate Synthase From
Hahella Chejuensis At 1.5a Resolution
pdb|2RFG|C Chain C, Crystal Structure Of Dihydrodipicolinate Synthase From
Hahella Chejuensis At 1.5a Resolution
pdb|2RFG|D Chain D, Crystal Structure Of Dihydrodipicolinate Synthase From
Hahella Chejuensis At 1.5a Resolution
Length = 297
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/195 (24%), Positives = 81/195 (41%), Gaps = 9/195 (4%)
Query: 546 ILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHHENIRG 605
+LC + + +++ +Y+HF V D IP+I+YN +DI +T+ +LA I G
Sbjct: 99 VLCVAGYYNRPSQEGLYQHFKMVHDAIDIPIIVYNIPPRAVVDIKPETMARLAALPRIVG 158
Query: 606 VKDTDNIKLANMANQTKDLN--FSVFXXXXXXXXXXXXXXCAGGINALSAVLGGPICELY 663
VKD LA ++ + +N FS G I+ + + ++
Sbjct: 159 VKDA-TTDLARISRERMLINKPFSFLSGDDMTAIAYNASGGQGCISVSANIAPALYGQMQ 217
Query: 664 DLAKAGKWEEAMKLQHRLVKPDVTVRNVLLMKEMGVPGVRAAMELYGYYGGRSRRPLPAA 723
G + EA+++ H L+ P + L +E G + A L G R P+
Sbjct: 218 TATLQGDFREALRI-HDLLAP----LHEALFREPSPAGAKYAASLLGLCNEECRLPI-VP 271
Query: 724 LKPGGAEKIKQVLTE 738
L IK ++ E
Sbjct: 272 LSEQTKSDIKNIINE 286
>pdb|3M5V|A Chain A, Crystal Structure Of Dihydrodipicolinate Synthase From
Campylobacter Jejuni
pdb|3M5V|B Chain B, Crystal Structure Of Dihydrodipicolinate Synthase From
Campylobacter Jejuni
pdb|3M5V|C Chain C, Crystal Structure Of Dihydrodipicolinate Synthase From
Campylobacter Jejuni
pdb|3M5V|D Chain D, Crystal Structure Of Dihydrodipicolinate Synthase From
Campylobacter Jejuni
Length = 301
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 41/65 (63%), Gaps = 3/65 (4%)
Query: 545 LILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHH-ENI 603
L + PYY K T+ +YEH+ ++A + IPV++YN T +IS DT++KL ENI
Sbjct: 108 LSVAPYY--NKPTQQGLYEHYKAIAQSVDIPVLLYNVPGRTGCEISTDTIIKLFRDCENI 165
Query: 604 RGVKD 608
GVK+
Sbjct: 166 YGVKE 170
>pdb|2V8Z|A Chain A, Crystal Structure Of Yage, A Prophage Protein Belonging To
The Dihydrodipicolinic Acid Synthase Family From E. Coli
K12
pdb|2V8Z|B Chain B, Crystal Structure Of Yage, A Prophage Protein Belonging To
The Dihydrodipicolinic Acid Synthase Family From E. Coli
K12
pdb|2V8Z|C Chain C, Crystal Structure Of Yage, A Prophage Protein Belonging To
The Dihydrodipicolinic Acid Synthase Family From E. Coli
K12
pdb|2V8Z|D Chain D, Crystal Structure Of Yage, A Prophage Protein Belonging To
The Dihydrodipicolinic Acid Synthase Family From E. Coli
K12
Length = 343
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 48/87 (55%), Gaps = 3/87 (3%)
Query: 524 TTTRATIDLTQXXXXXXXXXXLILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTF 583
T R TI+L+Q +++ PYY+ K++E + +F VAD+ +PV++YN
Sbjct: 110 TNARETIELSQHAQQAGADGIVVINPYYW--KVSEANLIRYFEQVADSVTLPVMLYNFPA 167
Query: 584 VTNIDISVDTLVKLAH-HENIRGVKDT 609
+T D++ + LA NI G+KDT
Sbjct: 168 LTGQDLTPALVKTLADSRSNIIGIKDT 194
>pdb|2YXG|A Chain A, Crystal Structure Of Dihyrodipicolinate Synthase (Dapa)
pdb|2YXG|B Chain B, Crystal Structure Of Dihyrodipicolinate Synthase (Dapa)
pdb|2YXG|C Chain C, Crystal Structure Of Dihyrodipicolinate Synthase (Dapa)
pdb|2YXG|D Chain D, Crystal Structure Of Dihyrodipicolinate Synthase (Dapa)
Length = 289
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 47/200 (23%), Positives = 87/200 (43%), Gaps = 17/200 (8%)
Query: 526 TRATIDLTQXXXXXXXXXXLILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVT 585
T I+L+ L + PYY K T++ + +HF VA++ +P+++YN T
Sbjct: 81 TEEAIELSVFAEDVGADAVLSITPYY--NKPTQEGLRKHFGKVAESINLPIVLYNVPSRT 138
Query: 586 NIDISVDTLVKLA-HHENIRGVKDTDNIKLANMANQTKDLNFSVFXXXXXXXXXXXXXXC 644
+++ T+ LA + NI VK+ N L+ ++ D +V
Sbjct: 139 AVNLEPKTVKLLAEEYSNISAVKEA-NPNLSQVSELIHDAKITVLSGNDELTLPIIALGG 197
Query: 645 AGGINALSAVLGGPICELYDLAKAGKWEEAMKLQHRLVKPDVTVRNVLLMKEMGVPG--- 701
G I+ ++ ++ E+ + A G +E+A ++ ++L LMK M +
Sbjct: 198 KGVISVVANIVPKEFVEMVNYALEGDFEKAREIHYKLFP---------LMKAMFIETNPI 248
Query: 702 -VRAAMELYGYYGGRSRRPL 720
V+ A+ + G G R PL
Sbjct: 249 PVKTALNMMGRPAGELRLPL 268
>pdb|2V9D|A Chain A, Crystal Structure Of Yage, A Prophage Protein Belonging To
The Dihydrodipicolinic Acid Synthase Family From E. Coli
K12
pdb|2V9D|B Chain B, Crystal Structure Of Yage, A Prophage Protein Belonging To
The Dihydrodipicolinic Acid Synthase Family From E. Coli
K12
pdb|2V9D|C Chain C, Crystal Structure Of Yage, A Prophage Protein Belonging To
The Dihydrodipicolinic Acid Synthase Family From E. Coli
K12
pdb|2V9D|D Chain D, Crystal Structure Of Yage, A Prophage Protein Belonging To
The Dihydrodipicolinic Acid Synthase Family From E. Coli
K12
Length = 343
Score = 46.6 bits (109), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 47/87 (54%), Gaps = 3/87 (3%)
Query: 524 TTTRATIDLTQXXXXXXXXXXLILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTF 583
T R TI+L+Q +++ PYY+ K++E + +F VAD+ +PV +YN
Sbjct: 110 TNARETIELSQHAQQAGADGIVVINPYYW--KVSEANLIRYFEQVADSVTLPVXLYNFPA 167
Query: 584 VTNIDISVDTLVKLAH-HENIRGVKDT 609
+T D++ + LA NI G+KDT
Sbjct: 168 LTGQDLTPALVKTLADSRSNIIGIKDT 194
>pdb|3NEV|A Chain A, Crystal Structure Of Yage, A Prophage Protein From E. Coli
K12 In Complex With Kdgal
pdb|3NEV|B Chain B, Crystal Structure Of Yage, A Prophage Protein From E. Coli
K12 In Complex With Kdgal
pdb|3NEV|C Chain C, Crystal Structure Of Yage, A Prophage Protein From E. Coli
K12 In Complex With Kdgal
pdb|3NEV|D Chain D, Crystal Structure Of Yage, A Prophage Protein From E. Coli
K12 In Complex With Kdgal
Length = 298
Score = 46.2 bits (108), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 48/87 (55%), Gaps = 3/87 (3%)
Query: 524 TTTRATIDLTQXXXXXXXXXXLILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTF 583
T R TI+L+Q +++ PYY+ K++E + +F VAD+ +PV++YN
Sbjct: 81 TNARETIELSQHAQQAGADGIVVINPYYW--KVSEANLIRYFEQVADSVTLPVMLYNFPA 138
Query: 584 VTNIDISVDTLVKLAH-HENIRGVKDT 609
+T D++ + LA NI G+KDT
Sbjct: 139 LTGQDLTPALVKTLADSRSNIIGIKDT 165
>pdb|3LER|A Chain A, Crystal Structure Of Dihydrodipicolinate Synthase From
Campylobacter Jejuni Subsp. Jejuni Nctc 11168
pdb|3LER|B Chain B, Crystal Structure Of Dihydrodipicolinate Synthase From
Campylobacter Jejuni Subsp. Jejuni Nctc 11168
pdb|3LER|C Chain C, Crystal Structure Of Dihydrodipicolinate Synthase From
Campylobacter Jejuni Subsp. Jejuni Nctc 11168
pdb|3LER|D Chain D, Crystal Structure Of Dihydrodipicolinate Synthase From
Campylobacter Jejuni Subsp. Jejuni Nctc 11168
Length = 301
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 40/65 (61%), Gaps = 3/65 (4%)
Query: 545 LILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHH-ENI 603
L + PYY K T+ +YEH+ ++A + IPV++YN T +IS DT++KL ENI
Sbjct: 108 LSVAPYY--NKPTQQGLYEHYKAIAQSVDIPVLLYNVPGRTGCEISTDTIIKLFRDCENI 165
Query: 604 RGVKD 608
GV +
Sbjct: 166 YGVXE 170
>pdb|1XXX|A Chain A, Crystal Structure Of Dihydrodipicolinate Synthase (Dapa,
Rv2753c) From Mycobacterium Tuberculosis
pdb|1XXX|B Chain B, Crystal Structure Of Dihydrodipicolinate Synthase (Dapa,
Rv2753c) From Mycobacterium Tuberculosis
pdb|1XXX|C Chain C, Crystal Structure Of Dihydrodipicolinate Synthase (Dapa,
Rv2753c) From Mycobacterium Tuberculosis
pdb|1XXX|D Chain D, Crystal Structure Of Dihydrodipicolinate Synthase (Dapa,
Rv2753c) From Mycobacterium Tuberculosis
pdb|1XXX|E Chain E, Crystal Structure Of Dihydrodipicolinate Synthase (Dapa,
Rv2753c) From Mycobacterium Tuberculosis
pdb|1XXX|F Chain F, Crystal Structure Of Dihydrodipicolinate Synthase (Dapa,
Rv2753c) From Mycobacterium Tuberculosis
pdb|1XXX|G Chain G, Crystal Structure Of Dihydrodipicolinate Synthase (Dapa,
Rv2753c) From Mycobacterium Tuberculosis
pdb|1XXX|H Chain H, Crystal Structure Of Dihydrodipicolinate Synthase (Dapa,
Rv2753c) From Mycobacterium Tuberculosis
Length = 303
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 43/83 (51%), Gaps = 2/83 (2%)
Query: 526 TRATIDLTQXXXXXXXXXXLILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVT 585
T +I L + L++ PYY K + + HF +VAD + +P+++Y+ +
Sbjct: 95 TAHSIRLAKACAAEGAHGLLVVTPYY--SKPPQRGLQAHFTAVADATELPMLLYDIPGRS 152
Query: 586 NIDISVDTLVKLAHHENIRGVKD 608
+ I DT+ LA H NI GVKD
Sbjct: 153 AVPIEPDTIRALASHPNIVGVKD 175
>pdb|3N2X|A Chain A, Crystal Structure Of Yage, A Prophage Protein Belonging To
The Dihydrodipicolinic Acid Synthase Family From E. Coli
K12 In Complex With Pyruvate
pdb|3N2X|B Chain B, Crystal Structure Of Yage, A Prophage Protein Belonging To
The Dihydrodipicolinic Acid Synthase Family From E. Coli
K12 In Complex With Pyruvate
pdb|3N2X|C Chain C, Crystal Structure Of Yage, A Prophage Protein Belonging To
The Dihydrodipicolinic Acid Synthase Family From E. Coli
K12 In Complex With Pyruvate
pdb|3N2X|D Chain D, Crystal Structure Of Yage, A Prophage Protein Belonging To
The Dihydrodipicolinic Acid Synthase Family From E. Coli
K12 In Complex With Pyruvate
Length = 298
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 47/87 (54%), Gaps = 3/87 (3%)
Query: 524 TTTRATIDLTQXXXXXXXXXXLILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTF 583
T R TI+L+Q +++ PYY+ K++E + +F VAD+ +PV++YN
Sbjct: 81 TNARETIELSQHAQQAGADGIVVINPYYW--KVSEANLIRYFEQVADSVTLPVMLYNFPA 138
Query: 584 VTNIDISVDTLVKLAH-HENIRGVKDT 609
+T D++ + LA NI G+ DT
Sbjct: 139 LTGQDLTPALVKTLADSRSNIIGIXDT 165
>pdb|3FLG|A Chain A, The Pwwp Domain Of Human Dna
(Cytosine-5-)-Methyltransferase 3 Beta
pdb|3QKJ|A Chain A, The Pwwp Domain Of Human Dna
(Cytosine-5-)-Methyltransferase 3 Beta In Complex With A
Bis-Tris Molecule
pdb|3QKJ|B Chain B, The Pwwp Domain Of Human Dna
(Cytosine-5-)-Methyltransferase 3 Beta In Complex With A
Bis-Tris Molecule
pdb|3QKJ|C Chain C, The Pwwp Domain Of Human Dna
(Cytosine-5-)-Methyltransferase 3 Beta In Complex With A
Bis-Tris Molecule
pdb|3QKJ|D Chain D, The Pwwp Domain Of Human Dna
(Cytosine-5-)-Methyltransferase 3 Beta In Complex With A
Bis-Tris Molecule
Length = 151
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 34/65 (52%), Gaps = 10/65 (15%)
Query: 360 GDLVWGSVKGYPSWPGKLISPAPT------QGRVWVKWFGMSNEPLSEVEPATLKSLSQG 413
GDLVWG +KG+ WP ++S T G WV+WFG + SEV L +L G
Sbjct: 22 GDLVWGKIKGFSWWPAMVVSWKATSKRQAMSGMRWVQWFG--DGKFSEVSADKLVAL--G 77
Query: 414 LEAHH 418
L + H
Sbjct: 78 LFSQH 82
>pdb|1KHC|A Chain A, Crystal Structure Of The Pwwp Domain Of Mammalian Dna
Methyltransferase Dnmt3b
Length = 147
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 34/65 (52%), Gaps = 10/65 (15%)
Query: 360 GDLVWGSVKGYPSWPGKLISPAPTQGRV------WVKWFGMSNEPLSEVEPATLKSLSQG 413
GDLVWG +KG+ WP ++S T R WV+WFG + SE+ L +L G
Sbjct: 15 GDLVWGKIKGFSWWPAMVVSWKATSKRQAMPGMRWVQWFG--DGKFSEISADKLVAL--G 70
Query: 414 LEAHH 418
L + H
Sbjct: 71 LFSQH 75
>pdb|3L21|A Chain A, The Crystal Structure Of A Dimeric Mutant Of
Dihydrodipicolinate Synthase (Dapa, Rv2753c) From
Mycobacterium Tuberculosis - Dhdps- A204r
pdb|3L21|B Chain B, The Crystal Structure Of A Dimeric Mutant Of
Dihydrodipicolinate Synthase (Dapa, Rv2753c) From
Mycobacterium Tuberculosis - Dhdps- A204r
pdb|3L21|C Chain C, The Crystal Structure Of A Dimeric Mutant Of
Dihydrodipicolinate Synthase (Dapa, Rv2753c) From
Mycobacterium Tuberculosis - Dhdps- A204r
pdb|3L21|D Chain D, The Crystal Structure Of A Dimeric Mutant Of
Dihydrodipicolinate Synthase (Dapa, Rv2753c) From
Mycobacterium Tuberculosis - Dhdps- A204r
pdb|3L21|E Chain E, The Crystal Structure Of A Dimeric Mutant Of
Dihydrodipicolinate Synthase (Dapa, Rv2753c) From
Mycobacterium Tuberculosis - Dhdps- A204r
pdb|3L21|F Chain F, The Crystal Structure Of A Dimeric Mutant Of
Dihydrodipicolinate Synthase (Dapa, Rv2753c) From
Mycobacterium Tuberculosis - Dhdps- A204r
Length = 304
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 42/83 (50%), Gaps = 2/83 (2%)
Query: 526 TRATIDLTQXXXXXXXXXXLILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVT 585
T +I L + L++ PYY K + + HF +VAD + +P+++Y+ +
Sbjct: 96 TAHSIRLAKACAAEGAHGLLVVTPYY--SKPPQRGLQAHFTAVADATELPMLLYDIPGRS 153
Query: 586 NIDISVDTLVKLAHHENIRGVKD 608
+ I DT+ LA H NI GV D
Sbjct: 154 AVPIEPDTIRALASHPNIVGVXD 176
>pdb|3DAQ|A Chain A, Crystal Structure Of Dihydrodipicolinate Synthase From
Methicillin- Resistant Staphylococcus Aureus
pdb|3DAQ|B Chain B, Crystal Structure Of Dihydrodipicolinate Synthase From
Methicillin- Resistant Staphylococcus Aureus
pdb|3DAQ|C Chain C, Crystal Structure Of Dihydrodipicolinate Synthase From
Methicillin- Resistant Staphylococcus Aureus
pdb|3DAQ|D Chain D, Crystal Structure Of Dihydrodipicolinate Synthase From
Methicillin- Resistant Staphylococcus Aureus
Length = 292
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 82/178 (46%), Gaps = 11/178 (6%)
Query: 545 LILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHHENIR 604
+++ PYY K + + +HF ++AD +PV++YN TN+ I +T+ L+ H I
Sbjct: 102 MLITPYY--NKTNQRGLVKHFEAIADAVKLPVVLYNVPSRTNMTIEPETVEILSQHPYIV 159
Query: 605 GVKD-TDNIKLANMANQTKDLN-FSVFXXXXXXXXXXXXXXCAGGINALSAVLGGPICEL 662
+KD T++ + + D N F+++ G I+ ++ V+ L
Sbjct: 160 ALKDATNDFEYLEEVKKRIDTNSFALYSGNDDNVVEYYQRGGQGVISVIANVIPKEFQAL 219
Query: 663 YDLAKAGKWEEAMKLQHRLVKPDVTVRNVLLMKEMGVPGVRAAMELYGYYGGRSRRPL 720
YD ++G + +Q + KP T+ + L + +P ++A G+ R PL
Sbjct: 220 YDAQQSG-----LDIQDQF-KPIGTLLSALSVDINPIP-IKALTSYLGFGNYELRLPL 270
>pdb|3DI0|A Chain A, Crystal Structure Of Dihydrodipicolinate Synthase From
Staphylococcus Aureus
pdb|3DI0|B Chain B, Crystal Structure Of Dihydrodipicolinate Synthase From
Staphylococcus Aureus
pdb|3DI1|A Chain A, Crystal Structure Of The Staphylococcus Aureus
Dihydrodipicolinate Synthase-pyruvate Complex
pdb|3DI1|B Chain B, Crystal Structure Of The Staphylococcus Aureus
Dihydrodipicolinate Synthase-pyruvate Complex
Length = 295
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 82/178 (46%), Gaps = 11/178 (6%)
Query: 545 LILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHHENIR 604
+++ PYY K + + +HF ++AD +PV++YN TN+ I +T+ L+ H I
Sbjct: 103 MLITPYY--NKTNQRGLVKHFEAIADAVKLPVVLYNVPSRTNMTIEPETVEILSQHPYIV 160
Query: 605 GVKD-TDNIKLANMANQTKDLN-FSVFXXXXXXXXXXXXXXCAGGINALSAVLGGPICEL 662
+KD T++ + + D N F+++ G I+ ++ V+ L
Sbjct: 161 ALKDATNDFEYLEEVKKRIDTNSFALYSGNDDNVVEYYQRGGQGVISVIANVIPKEFQAL 220
Query: 663 YDLAKAGKWEEAMKLQHRLVKPDVTVRNVLLMKEMGVPGVRAAMELYGYYGGRSRRPL 720
YD ++G + +Q + KP T+ + L + +P ++A G+ R PL
Sbjct: 221 YDAQQSG-----LDIQDQF-KPIGTLLSALSVDINPIP-IKALTSYLGFGNYELRLPL 271
>pdb|3LLR|A Chain A, Crystal Structure Of The Pwwp Domain Of Human Dna
(Cytosine-5-)- Methyltransferase 3 Alpha
pdb|3LLR|B Chain B, Crystal Structure Of The Pwwp Domain Of Human Dna
(Cytosine-5-)- Methyltransferase 3 Alpha
pdb|3LLR|C Chain C, Crystal Structure Of The Pwwp Domain Of Human Dna
(Cytosine-5-)- Methyltransferase 3 Alpha
pdb|3LLR|D Chain D, Crystal Structure Of The Pwwp Domain Of Human Dna
(Cytosine-5-)- Methyltransferase 3 Alpha
pdb|3LLR|E Chain E, Crystal Structure Of The Pwwp Domain Of Human Dna
(Cytosine-5-)- Methyltransferase 3 Alpha
Length = 154
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 36/71 (50%), Gaps = 8/71 (11%)
Query: 356 GLAEGDLVWGSVKGYPSWPGKLISPAPT------QGRVWVKWFGMSNEPLSEVEPATLKS 409
G G+LVWG ++G+ WPG+++S T +G WV WFG + S V L
Sbjct: 16 GFGIGELVWGKLRGFSWWPGRIVSWWMTGRSRAAEGTRWVMWFG--DGKFSVVCVEKLMP 73
Query: 410 LSQGLEAHHRS 420
LS A H++
Sbjct: 74 LSSFCSAFHQA 84
>pdb|4AHP|A Chain A, Crystal Structure Of Wild Type N-acetylneuraminic Acid
Lyase From Staphylococcus Aureus
pdb|4AHP|B Chain B, Crystal Structure Of Wild Type N-acetylneuraminic Acid
Lyase From Staphylococcus Aureus
pdb|4AHP|C Chain C, Crystal Structure Of Wild Type N-acetylneuraminic Acid
Lyase From Staphylococcus Aureus
pdb|4AHP|D Chain D, Crystal Structure Of Wild Type N-acetylneuraminic Acid
Lyase From Staphylococcus Aureus
Length = 298
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 78/178 (43%), Gaps = 15/178 (8%)
Query: 547 LCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGV 606
+ P+Y+ E I +++ + + + +IIY +T ++IS++ +L +HE I GV
Sbjct: 112 VTPFYYPFTFEE--IRDYYFDIIEATQNNMIIYAIPDLTGVNISIEQFSELFNHEKIVGV 169
Query: 607 KDTD-NIKLANMANQT--KDLNFSVFXXXXXXXXXXXXXXCAGGINALSAVLGGPICELY 663
K T N L + L S F G I + V G +++
Sbjct: 170 KYTAPNFFLLERIRKAFPDKLILSGF---DEMLVQATISGVDGAIGSTYNVNGRRARKIF 226
Query: 664 DLAKAGKWEEAMKLQHRLVKPDVTVRNVLLMKEMGV-PGVRAAMELYGYYGGRSRRPL 720
DLA+ G+ +EA +LQH + + VL MG+ P ++ + G G +RP
Sbjct: 227 DLARQGQIQEAYQLQH---DSNDIIETVL---SMGIYPTLKEILRHRGIDAGLPKRPF 278
>pdb|3NA8|A Chain A, Crystal Structure Of A Putative Dihydrodipicolinate
Synthetase From Pseudomonas Aeruginosa
pdb|3NA8|B Chain B, Crystal Structure Of A Putative Dihydrodipicolinate
Synthetase From Pseudomonas Aeruginosa
pdb|3NA8|C Chain C, Crystal Structure Of A Putative Dihydrodipicolinate
Synthetase From Pseudomonas Aeruginosa
pdb|3NA8|D Chain D, Crystal Structure Of A Putative Dihydrodipicolinate
Synthetase From Pseudomonas Aeruginosa
Length = 315
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 44/86 (51%), Gaps = 3/86 (3%)
Query: 525 TTRATIDLTQXXXXXXXXXXLILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFV 584
TT T+ Q +L Y+ K+ E +++H+ +V + +PV +YNN
Sbjct: 104 TTAKTVRRAQFAESLGAEAVXVLPISYW--KLNEAEVFQHYRAVGEAIGVPVXLYNNPGT 161
Query: 585 TNIDISVDTLVKLAHH-ENIRGVKDT 609
+ ID SV+ ++++ +N+ VK++
Sbjct: 162 SGIDXSVELILRIVREVDNVTXVKES 187
>pdb|3CPR|A Chain A, The Crystal Structure Of Corynebacterium Glutamicum
Dihydrodipicolinate Synthase To 2.2 A Resolution
pdb|3CPR|B Chain B, The Crystal Structure Of Corynebacterium Glutamicum
Dihydrodipicolinate Synthase To 2.2 A Resolution
Length = 304
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 46/209 (22%), Positives = 85/209 (40%), Gaps = 8/209 (3%)
Query: 514 QADLLKPQKHTTTRATIDLTQXXXXXXXXXXLILCPYYFQKKMTEDLIYEHFISVADNSP 573
+A L+ TR +++L + L++ PYY K +++ + HF ++A +
Sbjct: 85 RAKLIAGVGTNNTRTSVELAEAAASAGADGLLVVTPYY--SKPSQEGLLAHFGAIAAATE 142
Query: 574 IPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKDTDNIKLANMANQTKDLNFSVFXXXX 633
+P+ +Y+ + I I DT+ +L+ I V D L + K+ + +
Sbjct: 143 VPICLYDIPGRSGIPIESDTMRRLSELPTILAVXDAKG-DLVAATSLIKETGLAWYSGDD 201
Query: 634 XXXXXXXXXXCAGGINALSAVLGGPICELYDLAKAGKWEEAMKLQHRLVKPDVTVRNVLL 693
+G I+ + + ELY + G A ++ +L P V + L
Sbjct: 202 PLNLVWLALGGSGFISVIGHAAPTALRELYTSFEEGDLVRAREINAKL-SPLVAAQGRL- 259
Query: 694 MKEMGVPGVRAAMELYGYYGGRSRRPLPA 722
GV +AA+ L G G R P+ A
Sbjct: 260 ---GGVSLAKAALRLQGINVGDPRLPIMA 285
>pdb|4AH7|A Chain A, Structure Of Wild Type Stapylococcus Aureus
N-acetylneuraminic Acid Lyase In Complex With Pyruvate
pdb|4AH7|B Chain B, Structure Of Wild Type Stapylococcus Aureus
N-acetylneuraminic Acid Lyase In Complex With Pyruvate
pdb|4AH7|C Chain C, Structure Of Wild Type Stapylococcus Aureus
N-acetylneuraminic Acid Lyase In Complex With Pyruvate
pdb|4AH7|D Chain D, Structure Of Wild Type Stapylococcus Aureus
N-acetylneuraminic Acid Lyase In Complex With Pyruvate
pdb|4AMA|A Chain A, Crystal Structure Of N-acetylneuraminic Acid Lyase From
Staphylococcus Aureus With The Chemical Modification
Thia- Lysine At Position 165 In Complex With Pyruvate
pdb|4AMA|B Chain B, Crystal Structure Of N-acetylneuraminic Acid Lyase From
Staphylococcus Aureus With The Chemical Modification
Thia- Lysine At Position 165 In Complex With Pyruvate
pdb|4AMA|C Chain C, Crystal Structure Of N-acetylneuraminic Acid Lyase From
Staphylococcus Aureus With The Chemical Modification
Thia- Lysine At Position 165 In Complex With Pyruvate
pdb|4AMA|D Chain D, Crystal Structure Of N-acetylneuraminic Acid Lyase From
Staphylococcus Aureus With The Chemical Modification
Thia- Lysine At Position 165 In Complex With Pyruvate
Length = 298
Score = 37.7 bits (86), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 77/178 (43%), Gaps = 15/178 (8%)
Query: 547 LCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGV 606
+ P+Y+ E I +++ + + + +IIY +T ++IS++ +L +HE I GV
Sbjct: 112 VTPFYYPFTFEE--IRDYYFDIIEATQNNMIIYAIPDLTGVNISIEQFSELFNHEKIVGV 169
Query: 607 KDTD-NIKLANMANQT--KDLNFSVFXXXXXXXXXXXXXXCAGGINALSAVLGGPICELY 663
T N L + L S F G I + V G +++
Sbjct: 170 XYTAPNFFLLERIRKAFPDKLILSGF---DEMLVQATISGVDGAIGSTYNVNGRRARKIF 226
Query: 664 DLAKAGKWEEAMKLQHRLVKPDVTVRNVLLMKEMGV-PGVRAAMELYGYYGGRSRRPL 720
DLA+ G+ +EA +LQH + + VL MG+ P ++ + G G +RP
Sbjct: 227 DLARQGQIQEAYQLQH---DSNDIIETVL---SMGIYPTLKEILRHRGIDAGLPKRPF 278
>pdb|4AHO|A Chain A, Crystal Structure Of N-acetylneuraminic Acid Lyase From
Staphylococcus Aureus With The Chemical Modification
Thia-lysine At Position 165
pdb|4AHO|B Chain B, Crystal Structure Of N-acetylneuraminic Acid Lyase From
Staphylococcus Aureus With The Chemical Modification
Thia-lysine At Position 165
pdb|4AHO|C Chain C, Crystal Structure Of N-acetylneuraminic Acid Lyase From
Staphylococcus Aureus With The Chemical Modification
Thia-lysine At Position 165
pdb|4AHO|D Chain D, Crystal Structure Of N-acetylneuraminic Acid Lyase From
Staphylococcus Aureus With The Chemical Modification
Thia-lysine At Position 165
Length = 299
Score = 37.7 bits (86), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 77/178 (43%), Gaps = 15/178 (8%)
Query: 547 LCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGV 606
+ P+Y+ E I +++ + + + +IIY +T ++IS++ +L +HE I GV
Sbjct: 113 VTPFYYPFTFEE--IRDYYFDIIEATQNNMIIYAIPDLTGVNISIEQFSELFNHEKIVGV 170
Query: 607 KDTD-NIKLANMANQT--KDLNFSVFXXXXXXXXXXXXXXCAGGINALSAVLGGPICELY 663
T N L + L S F G I + V G +++
Sbjct: 171 XYTAPNFFLLERIRKAFPDKLILSGF---DEMLVQATISGVDGAIGSTYNVNGRRARKIF 227
Query: 664 DLAKAGKWEEAMKLQHRLVKPDVTVRNVLLMKEMGV-PGVRAAMELYGYYGGRSRRPL 720
DLA+ G+ +EA +LQH + + VL MG+ P ++ + G G +RP
Sbjct: 228 DLARQGQIQEAYQLQH---DSNDIIETVL---SMGIYPTLKEILRHRGIDAGLPKRPF 279
>pdb|2R91|A Chain A, Crystal Structure Of Kd(P)ga From T.Tenax
pdb|2R91|D Chain D, Crystal Structure Of Kd(P)ga From T.Tenax
pdb|2R91|B Chain B, Crystal Structure Of Kd(P)ga From T.Tenax
pdb|2R91|C Chain C, Crystal Structure Of Kd(P)ga From T.Tenax
pdb|2R94|A Chain A, Crystal Structure Of Kd(P)ga From T.Tenax
pdb|2R94|D Chain D, Crystal Structure Of Kd(P)ga From T.Tenax
pdb|2R94|B Chain B, Crystal Structure Of Kd(P)ga From T.Tenax
pdb|2R94|C Chain C, Crystal Structure Of Kd(P)ga From T.Tenax
Length = 286
Score = 37.0 bits (84), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 72/186 (38%), Gaps = 32/186 (17%)
Query: 547 LCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGV 606
L PYYF +++E I ++F + IPV +YN D+ +L IRGV
Sbjct: 97 LPPYYF-PRLSERQIAKYFRDLCSAVSIPVFLYNYPAAVGRDVDARAAKELG---CIRGV 152
Query: 607 KDTDN-----------IKLANMANQTKDLNFSVFXXXXXXXXXXXXXXCAGGINALSAVL 655
KDT+ + A + N + L F+ F A N L +L
Sbjct: 153 KDTNESLAHTLAYKRYLPQARVYNGSDSLVFASF-------AVRLDGVVASSANYLPELL 205
Query: 656 GGPICELYDLAKAGKWEEAMKLQHRLVKPDVTVRNVLLMKEMGVPGVRAAMELY-GYYGG 714
G + D AG E A LQ L + + R++ V +E++ GY G
Sbjct: 206 AG----IRDAVAAGDIERARSLQFLLDEIVESARHIGY-----AAAVYELVEIFQGYEAG 256
Query: 715 RSRRPL 720
R P+
Sbjct: 257 EPRGPV 262
>pdb|4AHQ|A Chain A, Crystal Structure Of N-acetylneuraminic Acid Lyase Mutant
K165c From Staphylococcus Aureus
pdb|4AHQ|B Chain B, Crystal Structure Of N-acetylneuraminic Acid Lyase Mutant
K165c From Staphylococcus Aureus
pdb|4AHQ|C Chain C, Crystal Structure Of N-acetylneuraminic Acid Lyase Mutant
K165c From Staphylococcus Aureus
pdb|4AHQ|D Chain D, Crystal Structure Of N-acetylneuraminic Acid Lyase Mutant
K165c From Staphylococcus Aureus
Length = 298
Score = 37.0 bits (84), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 77/178 (43%), Gaps = 15/178 (8%)
Query: 547 LCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGV 606
+ P+Y+ E I +++ + + + +IIY +T ++IS++ +L +HE I GV
Sbjct: 112 VTPFYYPFTFEE--IRDYYFDIIEATQNNMIIYAIPDLTGVNISIEQFSELFNHEKIVGV 169
Query: 607 KDTD-NIKLANMANQT--KDLNFSVFXXXXXXXXXXXXXXCAGGINALSAVLGGPICELY 663
T N L + L S F G I + V G +++
Sbjct: 170 CYTAPNFFLLERIRKAFPDKLILSGF---DEMLVQATISGVDGAIGSTYNVNGRRARKIF 226
Query: 664 DLAKAGKWEEAMKLQHRLVKPDVTVRNVLLMKEMGV-PGVRAAMELYGYYGGRSRRPL 720
DLA+ G+ +EA +LQH + + VL MG+ P ++ + G G +RP
Sbjct: 227 DLARQGQIQEAYQLQH---DSNDIIETVL---SMGIYPTLKEILRHRGIDAGLPKRPF 278
>pdb|1W3I|A Chain A, Sulfolobus Solfataricus 2-Keto-3-Deoxygluconate (Kdg)
Aldolase Complex With Pyruvate
pdb|1W3I|B Chain B, Sulfolobus Solfataricus 2-Keto-3-Deoxygluconate (Kdg)
Aldolase Complex With Pyruvate
pdb|1W3I|C Chain C, Sulfolobus Solfataricus 2-Keto-3-Deoxygluconate (Kdg)
Aldolase Complex With Pyruvate
pdb|1W3I|D Chain D, Sulfolobus Solfataricus 2-Keto-3-Deoxygluconate (Kdg)
Aldolase Complex With Pyruvate
Length = 293
Score = 35.8 bits (81), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 55/131 (41%), Gaps = 4/131 (3%)
Query: 548 CPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVK 607
PYY+ + M+E + ++F ++ + SP PV +YN T DI ++ GVK
Sbjct: 99 APYYYPR-MSEKHLVKYFKTLCEVSPHPVYLYNYPTATGKDIDAKVAKEIG---CFTGVK 154
Query: 608 DTDNIKLANMANQTKDLNFSVFXXXXXXXXXXXXXXCAGGINALSAVLGGPICELYDLAK 667
DT + + + + N V+ G + A S L + LA
Sbjct: 155 DTIENIIHTLDYKRLNPNMLVYSGSDMLIATVASTGLDGNVAAGSNYLPEVTVTIKKLAM 214
Query: 668 AGKWEEAMKLQ 678
K +EA+KLQ
Sbjct: 215 ERKIDEALKLQ 225
>pdb|1W37|A Chain A, 2-Keto-3-Deoxygluconate(Kdg) Aldolase Of Sulfolobus
Solfataricus
pdb|1W37|B Chain B, 2-Keto-3-Deoxygluconate(Kdg) Aldolase Of Sulfolobus
Solfataricus
pdb|1W37|C Chain C, 2-Keto-3-Deoxygluconate(Kdg) Aldolase Of Sulfolobus
Solfataricus
pdb|1W37|D Chain D, 2-Keto-3-Deoxygluconate(Kdg) Aldolase Of Sulfolobus
Solfataricus
pdb|1W3N|A Chain A, Sulfolobus Solfataricus 2-Keto-3-Deoxygluconate (Kdg)
Aldolase Complex With D-Kdg
pdb|1W3N|B Chain B, Sulfolobus Solfataricus 2-Keto-3-Deoxygluconate (Kdg)
Aldolase Complex With D-Kdg
pdb|1W3N|C Chain C, Sulfolobus Solfataricus 2-Keto-3-Deoxygluconate (Kdg)
Aldolase Complex With D-Kdg
pdb|1W3N|D Chain D, Sulfolobus Solfataricus 2-Keto-3-Deoxygluconate (Kdg)
Aldolase Complex With D-Kdg
pdb|1W3T|A Chain A, Sulfolobus Solfataricus 2-Keto-3-Deoxygluconate (Kdg)
Aldolase Complex With D-Kdgal, D-Glyceraldehyde And
Pyruvate
pdb|1W3T|B Chain B, Sulfolobus Solfataricus 2-Keto-3-Deoxygluconate (Kdg)
Aldolase Complex With D-Kdgal, D-Glyceraldehyde And
Pyruvate
pdb|1W3T|C Chain C, Sulfolobus Solfataricus 2-Keto-3-Deoxygluconate (Kdg)
Aldolase Complex With D-Kdgal, D-Glyceraldehyde And
Pyruvate
pdb|1W3T|D Chain D, Sulfolobus Solfataricus 2-Keto-3-Deoxygluconate (Kdg)
Aldolase Complex With D-Kdgal, D-Glyceraldehyde And
Pyruvate
Length = 294
Score = 35.8 bits (81), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 55/131 (41%), Gaps = 4/131 (3%)
Query: 548 CPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVK 607
PYY+ + M+E + ++F ++ + SP PV +YN T DI ++ GVK
Sbjct: 100 APYYYPR-MSEKHLVKYFKTLCEVSPHPVYLYNYPTATGKDIDAKVAKEIG---CFTGVK 155
Query: 608 DTDNIKLANMANQTKDLNFSVFXXXXXXXXXXXXXXCAGGINALSAVLGGPICELYDLAK 667
DT + + + + N V+ G + A S L + LA
Sbjct: 156 DTIENIIHTLDYKRLNPNMLVYSGSDMLIATVASTGLDGNVAAGSNYLPEVTVTIKKLAM 215
Query: 668 AGKWEEAMKLQ 678
K +EA+KLQ
Sbjct: 216 ERKIDEALKLQ 226
>pdb|4DPP|A Chain A, The Structure Of Dihydrodipicolinate Synthase 2 From
Arabidopsis Thaliana
pdb|4DPP|B Chain B, The Structure Of Dihydrodipicolinate Synthase 2 From
Arabidopsis Thaliana
pdb|4DPQ|A Chain A, The Structure Of Dihydrodipicolinate Synthase 2 From
Arabidopsis Thaliana In Complex With (S)-Lysine
pdb|4DPQ|B Chain B, The Structure Of Dihydrodipicolinate Synthase 2 From
Arabidopsis Thaliana In Complex With (S)-Lysine
Length = 360
Score = 33.1 bits (74), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 38/85 (44%), Gaps = 4/85 (4%)
Query: 524 TTTRATIDLTQXXXXXXXXXXLILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTF 583
+TR I T+ L + PYY K E LI HF SV P IIYN
Sbjct: 138 NSTREAIHATEQGFAVGMHAALHINPYY-GKTSIEGLI-AHFQSVLHMGP--TIIYNVPG 193
Query: 584 VTNIDISVDTLVKLAHHENIRGVKD 608
T DI + KL+ + N+ GVK+
Sbjct: 194 RTGQDIPPRAIFKLSQNPNLAGVKE 218
>pdb|3TJI|A Chain A, Crystal Structure Of An Enolase From Enterobacter Sp. 638
(Efi Target Efi-501662) With Bound Mg
pdb|3TJI|B Chain B, Crystal Structure Of An Enolase From Enterobacter Sp. 638
(Efi Target Efi-501662) With Bound Mg
pdb|3TJI|C Chain C, Crystal Structure Of An Enolase From Enterobacter Sp. 638
(Efi Target Efi-501662) With Bound Mg
pdb|3TJI|D Chain D, Crystal Structure Of An Enolase From Enterobacter Sp. 638
(Efi Target Efi-501662) With Bound Mg
Length = 422
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
Query: 694 MKEMGVPGVRAAMELYGYYGGRSRRPLPAALKPGGAEKIKQVLTEAGFLVP-GVRAAMEL 752
M + G A M LY +GG+SR +PA G E ++ + L+ G R
Sbjct: 118 MALWDIKGQLAGMPLYQLFGGKSRDAIPAYSHASG-ETLEALFASVDALIAQGYRHIRCQ 176
Query: 753 YGYYGG 758
G+YGG
Sbjct: 177 LGFYGG 182
>pdb|3SI9|A Chain A, Crystal Structure Of Dihydrodipicolinate Synthase From
Bartonella Henselae
pdb|3SI9|B Chain B, Crystal Structure Of Dihydrodipicolinate Synthase From
Bartonella Henselae
pdb|3SI9|C Chain C, Crystal Structure Of Dihydrodipicolinate Synthase From
Bartonella Henselae
pdb|3SI9|D Chain D, Crystal Structure Of Dihydrodipicolinate Synthase From
Bartonella Henselae
Length = 315
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 56/220 (25%), Positives = 91/220 (41%), Gaps = 10/220 (4%)
Query: 525 TTRATIDLTQXXXXXXXXXXLILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFV 584
+T ++L + L++ PYY + + +Y HF S+A IP+IIYN
Sbjct: 102 STSEAVELAKHAEKAGADAVLVVTPYY--NRPNQRGLYTHFSSIAKAISIPIIIYNIPSR 159
Query: 585 TNIDISVDTLVKLAHH-ENIRGVKD-TDNIKLANMANQTKDLNFSVFXXXXXXXXXXXXX 642
+ ID++V+T+ L +NI GVKD T I+ A+ + +F
Sbjct: 160 SVIDMAVETMRDLCRDFKNIIGVKDATGKIERASEQREKCGKDFVQLSGDDCTALGFNAH 219
Query: 643 XCAGGINALSAVLGGPICELYDLAKAGKWEEAMKLQHRLVKPDVTVRNVLLMKEMGVPGV 702
G I+ S V +L+ ++ A+KL L+ + R V + E G+
Sbjct: 220 GGVGCISVSSNVAPKLCAQLHAACLCSDYKTALKLNDLLMPLN---RAVFI--EPSPAGI 274
Query: 703 RAAMELYGYYGGRSRRPLPAALKPGGAEKIKQVLTEAGFL 742
+ A G G R P+ L + I + L AG L
Sbjct: 275 KYAAAKLGLCGTIVRSPI-VPLSDTTKKIIDEALYHAGLL 313
>pdb|2JDC|A Chain A, Glyphosate N-Acetyltransferase Bound To Oxidized Coa And
Sulfate
pdb|2JDD|A Chain A, Glyphosate N-Acetyltransferase Bound To Acetyl Coa And
3-Phosphoglycerate
Length = 146
Score = 32.0 bits (71), Expect = 1.2, Method: Composition-based stats.
Identities = 13/44 (29%), Positives = 26/44 (59%), Gaps = 4/44 (9%)
Query: 672 EEAMKLQHRLVKPDVTVRNVLLMKEMGVPGVRAAMELYGYYGGR 715
E+ +L+HR+++P+ + + ++ +R A L GYYGG+
Sbjct: 10 EDTYELRHRILRPNQPIEACMFESDL----LRGAFHLGGYYGGK 49
>pdb|3L42|A Chain A, Pwwp Domain Of Human Bromodomain And Phd Finger Containing
Protein 1
pdb|3MO8|A Chain A, Pwwp Domain Of Human Bromodomain And Phd Finger-Containing
Protein 1 In Complex With Trimethylated H3k36 Peptide
Length = 130
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Query: 361 DLVWGSVKGYPSWPGKLISPA-PTQG 385
DLVW +GYPS+P +I P P +G
Sbjct: 10 DLVWAKCRGYPSYPALIIDPKMPREG 35
>pdb|2X35|A Chain A, Molecular Basis Of Histone H3k36me3 Recognition By The
Pwwp Domain Of Brpf1.
pdb|2X4W|A Chain A, Molecular Basis Of Histone H3k36me3 Recognition By The
Pwwp Domain Of Brpf1.
pdb|2X4X|A Chain A, Molecular Basis Of Histone H3k36me3 Recognition By The
Pwwp Domain Of Brpf1.
pdb|2X4X|C Chain C, Molecular Basis Of Histone H3k36me3 Recognition By The
Pwwp Domain Of Brpf1.
pdb|2X4X|E Chain E, Molecular Basis Of Histone H3k36me3 Recognition By The
Pwwp Domain Of Brpf1.
pdb|2X4X|G Chain G, Molecular Basis Of Histone H3k36me3 Recognition By The
Pwwp Domain Of Brpf1.
pdb|2X4Y|A Chain A, Molecular Basis Of Histone H3k36me3 Recognition By The
Pwwp Domain Of Brpf1.
pdb|2X4Y|C Chain C, Molecular Basis Of Histone H3k36me3 Recognition By The
Pwwp Domain Of Brpf1.
pdb|2X4Y|E Chain E, Molecular Basis Of Histone H3k36me3 Recognition By The
Pwwp Domain Of Brpf1.
pdb|2X4Y|G Chain G, Molecular Basis Of Histone H3k36me3 Recognition By The
Pwwp Domain Of Brpf1.
pdb|2X4Y|I Chain I, Molecular Basis Of Histone H3k36me3 Recognition By The
Pwwp Domain Of Brpf1.
pdb|2X4Y|K Chain K, Molecular Basis Of Histone H3k36me3 Recognition By The
Pwwp Domain Of Brpf1.
pdb|2X4Y|M Chain M, Molecular Basis Of Histone H3k36me3 Recognition By The
Pwwp Domain Of Brpf1.
pdb|2X4Y|O Chain O, Molecular Basis Of Histone H3k36me3 Recognition By The
Pwwp Domain Of Brpf1
Length = 132
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Query: 361 DLVWGSVKGYPSWPGKLISPA-PTQG 385
DLVW +GYPS+P +I P P +G
Sbjct: 14 DLVWAKCRGYPSYPALIIDPKMPREG 39
>pdb|2YDA|A Chain A, Sulfolobus Sulfataricus 2-Keto-3-Deoxygluconate Aldolase
Y103f,Y130f, A198f Variant
pdb|2YDA|B Chain B, Sulfolobus Sulfataricus 2-Keto-3-Deoxygluconate Aldolase
Y103f,Y130f, A198f Variant
Length = 294
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 52/128 (40%), Gaps = 3/128 (2%)
Query: 551 YFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKDTD 610
YF +M+E + ++F ++ + SP PV ++N T DI ++ GVKDT
Sbjct: 102 YFYPRMSEKHLVKYFKTLCEVSPHPVYLFNYPTATGKDIDAKVAKEIG---CFTGVKDTI 158
Query: 611 NIKLANMANQTKDLNFSVFXXXXXXXXXXXXXXCAGGINALSAVLGGPICELYDLAKAGK 670
+ + + + N V+ G + S L + LA K
Sbjct: 159 ENIIHTLDYKRLNPNMLVYSGSDMLIATVASTGLDGNVAFGSNYLPEVTVTIKKLAMERK 218
Query: 671 WEEAMKLQ 678
+EA+KLQ
Sbjct: 219 IDEALKLQ 226
>pdb|1F6P|A Chain A, Crystal Structure Analysis Of N-Acetylneuraminate Lyase
From Haemophilus Influenzae: Crystal Form Iii
pdb|1F6P|B Chain B, Crystal Structure Analysis Of N-Acetylneuraminate Lyase
From Haemophilus Influenzae: Crystal Form Iii
pdb|1F6P|C Chain C, Crystal Structure Analysis Of N-Acetylneuraminate Lyase
From Haemophilus Influenzae: Crystal Form Iii
pdb|1F6P|D Chain D, Crystal Structure Analysis Of N-Acetylneuraminate Lyase
From Haemophilus Influenzae: Crystal Form Iii
pdb|1F73|A Chain A, Crystal Structure Analysis Of N-Acetylneuraminate Lyase
From Haemophilus Influenzae: Crystal Form Iii In Complex
With Sialic Acid Alditol
pdb|1F73|B Chain B, Crystal Structure Analysis Of N-Acetylneuraminate Lyase
From Haemophilus Influenzae: Crystal Form Iii In Complex
With Sialic Acid Alditol
pdb|1F73|C Chain C, Crystal Structure Analysis Of N-Acetylneuraminate Lyase
From Haemophilus Influenzae: Crystal Form Iii In Complex
With Sialic Acid Alditol
pdb|1F73|D Chain D, Crystal Structure Analysis Of N-Acetylneuraminate Lyase
From Haemophilus Influenzae: Crystal Form Iii In Complex
With Sialic Acid Alditol
pdb|1F74|A Chain A, Crystal Structure Analysis Of N-Acetylneuraminate Lyase
From Haemophilus Influenzae: Crystal Form Ii Complexed
With 4-Deoxy-Sialic Acid
pdb|1F74|C Chain C, Crystal Structure Analysis Of N-Acetylneuraminate Lyase
From Haemophilus Influenzae: Crystal Form Ii Complexed
With 4-Deoxy-Sialic Acid
pdb|1F7B|A Chain A, Crystal Structure Analysis Of N-acetylneuraminate Lyase
From Haemophilus Influenzae: Crystal Form Ii In Complex
With 4-oxo-sialic Acid
pdb|1F7B|C Chain C, Crystal Structure Analysis Of N-acetylneuraminate Lyase
From Haemophilus Influenzae: Crystal Form Ii In Complex
With 4-oxo-sialic Acid
pdb|1F5Z|A Chain A, Crystal Structure Analysis Of N-Acetylneuraminate Lyase
From Haemophilus Influenzae: Crystal Form I
pdb|1F5Z|B Chain B, Crystal Structure Analysis Of N-Acetylneuraminate Lyase
From Haemophilus Influenzae: Crystal Form I
pdb|1F5Z|C Chain C, Crystal Structure Analysis Of N-Acetylneuraminate Lyase
From Haemophilus Influenzae: Crystal Form I
pdb|1F5Z|D Chain D, Crystal Structure Analysis Of N-Acetylneuraminate Lyase
From Haemophilus Influenzae: Crystal Form I
pdb|1F6K|A Chain A, Crystal Structure Analysis Of N-Acetylneuraminate Lyase
From Haemophilus Influenzae: Crystal Form Ii
pdb|1F6K|C Chain C, Crystal Structure Analysis Of N-Acetylneuraminate Lyase
From Haemophilus Influenzae: Crystal Form Ii
Length = 293
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 38/181 (20%), Positives = 80/181 (44%), Gaps = 17/181 (9%)
Query: 547 LCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGV 606
+ P+Y++ E I ++ ++ + +I+Y+ F+T +++ ++ +L + + GV
Sbjct: 106 VTPFYYKFSFPE--IKHYYDTIIAETGSNMIVYSIPFLTGVNMGIEQFGELYKNPKVLGV 163
Query: 607 KDT--DNIKLANMANQTKDLNFSVFXXXXXXXXXXXXXXCAGGINALSAVLGGPICELYD 664
K T D L + N ++ G I + V G ++++
Sbjct: 164 KFTAGDFYLLERLKKAYP--NHLIWAGFDEMMLPAASLGVDGAIGSTFNVNGVRARQIFE 221
Query: 665 LAKAGKWEEAMKLQH---RLVKPDVTVRNVLLMKEMGVPGVRAAMELYGYYGGRSRRPLP 721
L KAGK +EA+++QH L++ + L +KE+ ++L G G R P+
Sbjct: 222 LTKAGKLKEALEIQHVTNDLIEGILANGLYLTIKEL--------LKLEGVDAGYCREPMT 273
Query: 722 A 722
+
Sbjct: 274 S 274
>pdb|2BSW|A Chain A, Crystal Structure Of A Glyphosate-N-Acetyltransferase
Obtained By Dna Shuffling
Length = 146
Score = 30.8 bits (68), Expect = 3.2, Method: Composition-based stats.
Identities = 13/44 (29%), Positives = 25/44 (56%), Gaps = 4/44 (9%)
Query: 672 EEAMKLQHRLVKPDVTVRNVLLMKEMGVPGVRAAMELYGYYGGR 715
E+ +L+HR+++P+ + ++ +R A L GYYGG+
Sbjct: 10 EDTYELRHRILRPNQPIEACXFESDL----LRGAFHLGGYYGGK 49
>pdb|2NLU|A Chain A, Domain-Swapped Dimer Of The Pwwp Module Of Human Hepatoma-
Derived Growth Factor
pdb|2NLU|B Chain B, Domain-Swapped Dimer Of The Pwwp Module Of Human Hepatoma-
Derived Growth Factor
Length = 100
Score = 30.8 bits (68), Expect = 3.4, Method: Composition-based stats.
Identities = 10/18 (55%), Positives = 14/18 (77%)
Query: 360 GDLVWGSVKGYPSWPGKL 377
GDLV+ +KGYP WP ++
Sbjct: 13 GDLVFAKMKGYPHWPARI 30
>pdb|2B8A|A Chain A, High Resolution Structure Of The Hdgf Pwwp Domain
Length = 110
Score = 30.8 bits (68), Expect = 3.4, Method: Composition-based stats.
Identities = 10/18 (55%), Positives = 14/18 (77%)
Query: 360 GDLVWGSVKGYPSWPGKL 377
GDLV+ +KGYP WP ++
Sbjct: 13 GDLVFAKMKGYPHWPARI 30
>pdb|1RI0|A Chain A, Nmr Structure Of The N-Terminal Hath Domain Of Human Hdgf
Length = 110
Score = 30.4 bits (67), Expect = 3.5, Method: Composition-based stats.
Identities = 10/18 (55%), Positives = 14/18 (77%)
Query: 360 GDLVWGSVKGYPSWPGKL 377
GDLV+ +KGYP WP ++
Sbjct: 23 GDLVFAKMKGYPHWPARI 40
>pdb|3M8L|B Chain B, Crystal Structure Analysis Of The Feline Calicivirus
Capsid Protein
Length = 530
Score = 30.4 bits (67), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 128 SPTSTSVHLVSSSNTDWSDVNPDSDGF 154
SP S +V+ + SN W D+ DSDGF
Sbjct: 470 SPDSFAVYRIIDSNGSWFDIGIDSDGF 496
>pdb|3M8L|A Chain A, Crystal Structure Analysis Of The Feline Calicivirus
Capsid Protein
pdb|3M8L|C Chain C, Crystal Structure Analysis Of The Feline Calicivirus
Capsid Protein
Length = 534
Score = 30.4 bits (67), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 128 SPTSTSVHLVSSSNTDWSDVNPDSDGF 154
SP S +V+ + SN W D+ DSDGF
Sbjct: 474 SPDSFAVYRIIDSNGSWFDIGIDSDGF 500
>pdb|2GFU|A Chain A, Nmr Solution Structure Of The Pwwp Domain Of Mismatch
Repair Protein Hmsh6
Length = 134
Score = 30.4 bits (67), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Query: 360 GDLVWGSVKGYPSWPGKLISPAPTQG 385
GDLVW ++GYP WP L+ P G
Sbjct: 26 GDLVWAKMEGYPWWPS-LVYNHPFDG 50
>pdb|4FU6|A Chain A, Crystal Structure Of The Psip1 Pwwp Domain
Length = 153
Score = 30.4 bits (67), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 9/18 (50%), Positives = 14/18 (77%)
Query: 360 GDLVWGSVKGYPSWPGKL 377
GDL++ +KGYP WP ++
Sbjct: 26 GDLIFAKMKGYPHWPARV 43
>pdb|3QBY|A Chain A, Crystal Structure Of The Pwwp Domain Of Human
Hepatoma-Derived Growth Factor 2
pdb|3QBY|B Chain B, Crystal Structure Of The Pwwp Domain Of Human
Hepatoma-Derived Growth Factor 2
pdb|3QBY|C Chain C, Crystal Structure Of The Pwwp Domain Of Human
Hepatoma-Derived Growth Factor 2
pdb|3QJ6|A Chain A, The Crystal Structure Of Pwwp Domain Of Human
Hepatoma-Derived Growth Factor 2 In Complex With
H3k79me3 Peptide
Length = 94
Score = 30.0 bits (66), Expect = 5.0, Method: Composition-based stats.
Identities = 10/18 (55%), Positives = 14/18 (77%)
Query: 360 GDLVWGSVKGYPSWPGKL 377
GDLV+ +KGYP WP ++
Sbjct: 9 GDLVFAKMKGYPHWPARI 26
>pdb|3EAE|A Chain A, Pwwp Domain Of Human Hepatoma-Derived Growth Factor 2
(Hdgf2)
pdb|3EAE|B Chain B, Pwwp Domain Of Human Hepatoma-Derived Growth Factor 2
(Hdgf2)
Length = 93
Score = 30.0 bits (66), Expect = 5.0, Method: Composition-based stats.
Identities = 10/18 (55%), Positives = 14/18 (77%)
Query: 360 GDLVWGSVKGYPSWPGKL 377
GDLV+ +KGYP WP ++
Sbjct: 8 GDLVFAKMKGYPHWPARI 25
>pdb|3PFS|A Chain A, Pwwp Domain Of Human Bromodomain And Phd Finger-Containing
Protein 3
pdb|3PFS|B Chain B, Pwwp Domain Of Human Bromodomain And Phd Finger-Containing
Protein 3
Length = 158
Score = 30.0 bits (66), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Query: 361 DLVWGSVKGYPSWPGKLISPA-PTQG 385
+LVW +GYPS+P +I P P +G
Sbjct: 41 ELVWAKCRGYPSYPALIIDPKMPREG 66
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.131 0.389
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,431,017
Number of Sequences: 62578
Number of extensions: 685894
Number of successful extensions: 1732
Number of sequences better than 100.0: 87
Number of HSP's better than 100.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 1633
Number of HSP's gapped (non-prelim): 96
length of query: 786
length of database: 14,973,337
effective HSP length: 107
effective length of query: 679
effective length of database: 8,277,491
effective search space: 5620416389
effective search space used: 5620416389
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 55 (25.8 bits)