Query psy11975
Match_columns 786
No_of_seqs 388 out of 1667
Neff 4.6
Searched_HMMs 46136
Date Fri Aug 16 15:25:10 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11975.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11975hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR02313 HpaI-NOT-DapA 2,4-di 100.0 2.6E-49 5.7E-54 419.4 29.5 251 456-743 36-293 (294)
2 COG0329 DapA Dihydrodipicolina 100.0 8.8E-49 1.9E-53 417.1 28.6 248 456-740 40-295 (299)
3 TIGR00674 dapA dihydrodipicoli 100.0 4.4E-48 9.5E-53 407.2 28.4 247 456-739 34-285 (285)
4 PRK04147 N-acetylneuraminate l 100.0 3.9E-48 8.5E-53 409.3 27.8 247 456-740 40-291 (293)
5 PF00701 DHDPS: Dihydrodipicol 100.0 2.4E-48 5.2E-53 408.9 24.5 248 456-740 37-289 (289)
6 cd00954 NAL N-Acetylneuraminic 100.0 9.3E-48 2E-52 405.6 28.3 246 456-738 37-288 (288)
7 PRK03170 dihydrodipicolinate s 100.0 2.4E-47 5.2E-52 402.2 29.4 250 456-742 37-291 (292)
8 TIGR00683 nanA N-acetylneurami 100.0 2.2E-47 4.7E-52 404.1 28.2 246 456-739 37-289 (290)
9 cd00408 DHDPS-like Dihydrodipi 100.0 1.3E-46 2.9E-51 393.1 28.3 244 456-736 33-281 (281)
10 cd00950 DHDPS Dihydrodipicolin 100.0 5.8E-46 1.3E-50 389.6 27.2 244 456-736 36-284 (284)
11 TIGR03249 KdgD 5-dehydro-4-deo 100.0 3.4E-45 7.3E-50 387.8 29.2 246 456-740 41-296 (296)
12 cd00952 CHBPH_aldolase Trans-o 100.0 4.3E-45 9.2E-50 390.0 28.7 251 456-739 44-306 (309)
13 cd00951 KDGDH 5-dehydro-4-deox 100.0 2.8E-44 6.1E-49 379.9 29.1 243 456-737 36-288 (289)
14 PLN02417 dihydrodipicolinate s 100.0 1.6E-44 3.5E-49 380.4 27.0 237 456-741 37-279 (280)
15 PRK03620 5-dehydro-4-deoxygluc 100.0 4.1E-44 9E-49 381.1 29.0 246 456-740 43-298 (303)
16 cd00953 KDG_aldolase KDG (2-ke 100.0 2.2E-43 4.8E-48 371.6 27.5 237 456-737 35-278 (279)
17 cd05835 Dnmt3b_related The PWW 99.7 1.3E-18 2.9E-23 155.3 4.6 62 357-420 1-68 (87)
18 cd05834 HDGF_related The PWWP 99.7 3.2E-18 7E-23 151.8 4.9 63 356-420 2-67 (83)
19 cd05836 N_Pac_NP60 The PWWP do 99.7 4.1E-18 8.9E-23 152.0 4.6 61 357-419 1-68 (86)
20 cd00945 Aldolase_Class_I Class 99.7 6.4E-17 1.4E-21 158.0 12.8 138 510-650 43-201 (201)
21 smart00293 PWWP domain with co 99.6 2.2E-16 4.7E-21 132.9 5.0 53 357-411 1-63 (63)
22 cd05840 SPBC215_ISWI_like The 99.6 2.3E-16 5.1E-21 142.8 4.5 59 357-417 1-72 (93)
23 cd06080 MUM1_like Mutated mela 99.6 5.4E-16 1.2E-20 136.9 5.8 61 357-419 1-62 (80)
24 PF00855 PWWP: PWWP domain; I 99.6 2.1E-16 4.6E-21 138.3 2.6 62 357-420 1-68 (86)
25 cd05837 MSH6_like The PWWP dom 99.6 5.6E-16 1.2E-20 144.0 5.0 61 356-417 2-74 (110)
26 cd05162 PWWP The PWWP domain, 99.6 9.2E-16 2E-20 135.9 4.7 58 357-416 1-67 (87)
27 cd05841 BS69_related The PWWP 99.6 1.1E-15 2.3E-20 135.9 4.2 59 356-418 6-65 (83)
28 cd05838 WHSC1_related The PWWP 99.6 1.7E-15 3.7E-20 137.5 4.8 61 357-419 1-71 (95)
29 cd05839 BR140_related The PWWP 99.4 5.4E-13 1.2E-17 124.5 5.5 56 357-413 1-81 (111)
30 cd08205 RuBisCO_IV_RLP Ribulos 99.2 6.3E-12 1.4E-16 138.6 5.9 158 461-645 169-362 (367)
31 KOG1904|consensus 99.1 7.3E-11 1.6E-15 133.4 4.3 68 354-423 10-82 (496)
32 cd08210 RLP_RrRLP Ribulose bis 98.9 1.6E-09 3.5E-14 119.6 8.1 156 461-645 164-358 (364)
33 cd00377 ICL_PEPM Members of th 98.4 1.3E-06 2.7E-11 91.8 10.7 96 462-597 116-218 (243)
34 PF06187 DUF993: Protein of un 97.5 0.0012 2.6E-08 72.4 12.7 256 465-752 85-373 (382)
35 TIGR02320 PEP_mutase phosphoen 97.5 0.00091 2E-08 72.4 11.7 100 463-597 128-232 (285)
36 PRK07565 dihydroorotate dehydr 97.4 0.0067 1.5E-07 66.6 16.9 89 465-583 82-175 (334)
37 KOG1081|consensus 97.0 0.0016 3.5E-08 74.8 7.4 89 355-449 134-225 (463)
38 TIGR00737 nifR3_yhdG putative 96.0 0.42 9.1E-06 52.2 18.3 154 514-670 62-243 (319)
39 PRK08227 autoinducer 2 aldolas 95.9 0.12 2.6E-06 55.8 13.2 136 513-655 73-230 (264)
40 COG1830 FbaB DhnA-type fructos 95.8 0.11 2.3E-06 56.1 12.2 137 511-651 74-238 (265)
41 cd04740 DHOD_1B_like Dihydroor 95.6 0.4 8.8E-06 51.5 16.1 69 514-582 89-163 (296)
42 PRK07259 dihydroorotate dehydr 95.6 0.37 7.9E-06 52.1 15.6 69 514-582 91-166 (301)
43 PRK10415 tRNA-dihydrouridine s 95.3 0.66 1.4E-05 51.1 16.4 154 514-670 64-245 (321)
44 cd02810 DHOD_DHPD_FMN Dihydroo 95.1 0.49 1.1E-05 50.5 14.6 144 514-663 98-287 (289)
45 cd04739 DHOD_like Dihydroorota 95.1 0.6 1.3E-05 51.5 15.5 146 514-666 99-284 (325)
46 cd00958 DhnA Class I fructose- 95.1 0.44 9.6E-06 49.4 13.8 123 524-652 73-216 (235)
47 cd02940 DHPD_FMN Dihydropyrimi 94.9 0.59 1.3E-05 50.7 14.8 146 514-664 99-297 (299)
48 PRK07226 fructose-bisphosphate 94.9 0.38 8.3E-06 51.4 13.1 119 527-651 93-232 (267)
49 PRK08318 dihydropyrimidine deh 94.7 0.75 1.6E-05 52.2 15.5 149 514-666 99-300 (420)
50 PRK09250 fructose-bisphosphate 94.1 0.89 1.9E-05 51.0 13.9 102 511-617 122-248 (348)
51 TIGR03326 rubisco_III ribulose 94.1 0.96 2.1E-05 51.8 14.4 152 510-670 208-393 (412)
52 PRK12858 tagatose 1,6-diphosph 93.4 0.92 2E-05 50.7 12.5 116 533-651 112-277 (340)
53 PRK00278 trpC indole-3-glycero 93.3 0.97 2.1E-05 48.4 12.1 122 512-645 47-182 (260)
54 cd02801 DUS_like_FMN Dihydrour 93.3 2.2 4.9E-05 43.6 14.3 147 512-662 52-226 (231)
55 cd04741 DHOD_1A_like Dihydroor 92.8 4.1 8.8E-05 44.4 16.1 147 514-667 91-291 (294)
56 PRK11815 tRNA-dihydrouridine s 92.8 1.1 2.4E-05 49.6 12.0 152 514-670 64-253 (333)
57 PRK06852 aldolase; Validated 92.6 1.9 4.2E-05 47.6 13.4 138 513-655 91-269 (304)
58 cd04738 DHOD_2_like Dihydrooro 91.9 2.2 4.8E-05 47.1 13.0 144 514-664 128-325 (327)
59 PRK05286 dihydroorotate dehydr 91.8 2 4.3E-05 47.8 12.6 146 514-666 137-336 (344)
60 PLN02591 tryptophan synthase 91.2 5.6 0.00012 42.8 14.7 124 514-652 78-220 (250)
61 TIGR01949 AroFGH_arch predicte 91.2 2.3 4.9E-05 45.3 11.7 133 513-651 69-228 (258)
62 PRK02506 dihydroorotate dehydr 91.0 2.7 5.8E-05 46.2 12.3 69 514-582 92-166 (310)
63 cd00377 ICL_PEPM Members of th 90.9 3.3 7.1E-05 44.0 12.6 125 517-651 12-181 (243)
64 cd08209 RLP_DK-MTP-1-P-enolase 90.7 3.7 8E-05 46.9 13.4 60 510-579 188-249 (391)
65 COG0159 TrpA Tryptophan syntha 90.6 8.3 0.00018 42.0 15.2 124 513-652 93-235 (265)
66 PRK13125 trpA tryptophan synth 90.5 9.2 0.0002 40.4 15.4 147 514-681 74-236 (244)
67 smart00743 Agenet Tudor-like d 90.3 0.2 4.3E-06 41.6 2.3 52 356-410 2-56 (61)
68 cd00381 IMPDH IMPDH: The catal 89.8 8.1 0.00018 42.8 14.9 129 515-657 83-233 (325)
69 cd06557 KPHMT-like Ketopantoat 89.4 4.8 0.0001 43.4 12.3 96 517-619 15-125 (254)
70 cd08206 RuBisCO_large_I_II_III 89.3 4.4 9.4E-05 46.7 12.6 88 510-609 196-301 (414)
71 cd02809 alpha_hydroxyacid_oxid 89.3 17 0.00037 39.5 16.8 124 515-651 116-257 (299)
72 CHL00200 trpA tryptophan synth 89.2 14 0.0003 40.1 15.6 124 514-652 91-233 (263)
73 cd08207 RLP_NonPhot Ribulose b 88.9 6.6 0.00014 45.1 13.7 60 510-579 207-266 (406)
74 PRK13111 trpA tryptophan synth 88.6 15 0.00033 39.6 15.5 123 514-652 89-230 (258)
75 PRK00311 panB 3-methyl-2-oxobu 88.2 3 6.6E-05 45.2 9.9 96 517-619 18-128 (264)
76 PRK13813 orotidine 5'-phosphat 88.1 7.5 0.00016 39.9 12.4 111 534-652 74-194 (215)
77 TIGR01037 pyrD_sub1_fam dihydr 88.1 18 0.00039 39.1 15.9 67 514-580 90-164 (300)
78 CHL00162 thiG thiamin biosynth 87.8 13 0.00029 40.4 14.2 128 514-654 70-222 (267)
79 PRK09549 mtnW 2,3-diketo-5-met 87.8 9.5 0.00021 43.9 14.0 112 510-634 198-334 (407)
80 PRK01130 N-acetylmannosamine-6 87.7 9.8 0.00021 39.3 13.0 117 530-657 78-209 (221)
81 cd04734 OYE_like_3_FMN Old yel 87.7 5.6 0.00012 44.3 12.0 91 523-619 224-330 (343)
82 KOG1819|consensus 87.7 0.3 6.5E-06 56.2 2.0 28 203-230 567-594 (990)
83 cd04728 ThiG Thiazole synthase 87.6 8.9 0.00019 41.4 12.8 129 514-655 62-209 (248)
84 TIGR00742 yjbN tRNA dihydrouri 87.5 38 0.00083 37.6 18.1 152 514-669 54-243 (318)
85 cd02803 OYE_like_FMN_family Ol 87.2 4.7 0.0001 43.8 10.8 84 511-600 205-302 (327)
86 PRK04208 rbcL ribulose bisopho 87.2 11 0.00024 44.1 14.2 91 510-609 224-329 (468)
87 cd04729 NanE N-acetylmannosami 87.1 6.6 0.00014 40.5 11.3 117 530-657 82-213 (219)
88 TIGR00222 panB 3-methyl-2-oxob 86.8 4.3 9.3E-05 44.1 10.0 76 532-609 27-113 (263)
89 cd00331 IGPS Indole-3-glycerol 86.7 5.5 0.00012 40.9 10.5 123 513-647 9-145 (217)
90 PRK00208 thiG thiazole synthas 86.7 11 0.00024 40.7 12.9 129 514-655 62-209 (250)
91 TIGR00126 deoC deoxyribose-pho 86.2 5.8 0.00013 41.6 10.4 117 522-645 65-199 (211)
92 COG2513 PrpB PEP phosphonomuta 86.2 8 0.00017 42.6 11.7 143 514-667 18-202 (289)
93 PRK11320 prpB 2-methylisocitra 86.1 6.6 0.00014 43.2 11.1 62 524-597 163-226 (292)
94 COG0042 tRNA-dihydrouridine sy 86.0 56 0.0012 36.4 18.4 154 512-671 64-249 (323)
95 TIGR00262 trpA tryptophan synt 85.9 19 0.0004 38.7 14.3 122 514-652 87-229 (256)
96 cd08213 RuBisCO_large_III Ribu 85.9 11 0.00024 43.5 13.2 89 511-609 196-299 (412)
97 PLN02433 uroporphyrinogen deca 85.5 16 0.00034 40.6 13.9 131 525-668 177-336 (345)
98 PRK06552 keto-hydroxyglutarate 85.5 12 0.00027 39.2 12.4 132 517-681 68-205 (213)
99 PLN02424 ketopantoate hydroxym 85.3 5.4 0.00012 44.7 10.1 78 531-609 46-134 (332)
100 PF01791 DeoC: DeoC/LacD famil 85.3 1.3 2.8E-05 46.3 5.1 135 514-651 56-231 (236)
101 PF13714 PEP_mutase: Phosphoen 85.2 2.9 6.2E-05 44.6 7.7 92 465-597 115-211 (238)
102 PRK10550 tRNA-dihydrouridine s 85.2 9.5 0.00021 42.1 11.9 86 514-609 133-224 (312)
103 cd06556 ICL_KPHMT Members of t 84.9 2.6 5.6E-05 45.0 7.2 72 515-597 126-216 (240)
104 PRK11840 bifunctional sulfur c 84.8 27 0.00058 39.3 15.1 140 514-666 136-294 (326)
105 TIGR03332 salvage_mtnW 2,3-dik 84.7 13 0.00028 42.9 13.0 94 511-617 204-316 (407)
106 PRK10550 tRNA-dihydrouridine s 84.7 21 0.00045 39.5 14.3 147 514-663 62-238 (312)
107 cd02931 ER_like_FMN Enoate red 84.4 11 0.00023 42.7 12.2 91 523-619 248-350 (382)
108 cd03465 URO-D_like The URO-D _ 84.1 28 0.0006 37.7 14.8 100 526-635 167-275 (330)
109 cd04733 OYE_like_2_FMN Old yel 84.0 9.7 0.00021 42.1 11.5 85 510-600 212-313 (338)
110 PF00218 IGPS: Indole-3-glycer 83.9 3.3 7.2E-05 44.6 7.5 61 512-578 45-114 (254)
111 PRK00278 trpC indole-3-glycero 83.5 23 0.00049 38.1 13.7 128 514-660 111-250 (260)
112 cd00959 DeoC 2-deoxyribose-5-p 83.3 9 0.0002 39.4 10.1 117 523-645 65-198 (203)
113 PTZ00314 inosine-5'-monophosph 83.2 8.1 0.00017 45.4 10.9 118 527-657 240-380 (495)
114 TIGR02320 PEP_mutase phosphoen 83.0 21 0.00045 39.2 13.3 140 517-667 12-206 (285)
115 PF01180 DHO_dh: Dihydroorotat 83.0 6.6 0.00014 42.4 9.5 151 514-667 96-292 (295)
116 TIGR02321 Pphn_pyruv_hyd phosp 82.9 12 0.00026 41.1 11.4 64 525-598 164-227 (290)
117 CHL00040 rbcL ribulose-1,5-bis 82.8 10 0.00022 44.4 11.4 81 511-599 232-319 (475)
118 cd02911 arch_FMN Archeal FMN-b 82.8 33 0.00072 36.3 14.3 139 514-663 72-232 (233)
119 cd00331 IGPS Indole-3-glycerol 82.6 27 0.00059 35.8 13.4 122 514-654 72-205 (217)
120 cd08212 RuBisCO_large_I Ribulo 82.3 36 0.00078 39.8 15.4 89 511-609 210-313 (450)
121 PRK04302 triosephosphate isome 82.2 24 0.00051 36.8 12.8 122 532-666 77-218 (223)
122 PF00290 Trp_syntA: Tryptophan 81.8 10 0.00022 41.0 10.3 125 513-652 86-228 (259)
123 PRK05718 keto-hydroxyglutarate 81.7 20 0.00042 37.8 12.0 132 517-680 67-206 (212)
124 cd02930 DCR_FMN 2,4-dienoyl-Co 81.2 8 0.00017 43.1 9.5 72 523-600 220-297 (353)
125 cd08208 RLP_Photo Ribulose bis 80.9 12 0.00026 43.4 10.8 59 511-579 225-283 (424)
126 PRK13398 3-deoxy-7-phosphohept 80.6 45 0.00097 36.3 14.6 101 512-616 25-152 (266)
127 TIGR02317 prpB methylisocitrat 80.6 14 0.00031 40.5 11.0 64 524-597 158-221 (285)
128 TIGR02319 CPEP_Pphonmut carbox 79.8 14 0.0003 40.8 10.6 63 524-597 162-225 (294)
129 PRK02083 imidazole glycerol ph 79.6 12 0.00025 39.7 9.7 133 514-654 74-231 (253)
130 TIGR00736 nifR3_rel_arch TIM-b 79.2 40 0.00086 36.0 13.4 138 513-656 66-226 (231)
131 TIGR03128 RuMP_HxlA 3-hexulose 79.2 60 0.0013 32.9 14.4 125 515-653 53-189 (206)
132 smart00333 TUDOR Tudor domain. 79.1 2 4.3E-05 34.8 3.0 53 356-411 2-54 (57)
133 cd06556 ICL_KPHMT Members of t 79.0 25 0.00053 37.7 11.9 75 532-609 24-109 (240)
134 cd08148 RuBisCO_large Ribulose 78.3 16 0.00034 41.6 10.7 131 511-654 192-349 (366)
135 cd00958 DhnA Class I fructose- 77.5 6.8 0.00015 40.7 7.1 53 514-568 179-233 (235)
136 PRK05437 isopentenyl pyrophosp 77.0 1E+02 0.0022 34.8 16.5 83 513-599 119-208 (352)
137 TIGR03849 arch_ComA phosphosul 76.8 15 0.00032 39.5 9.4 62 464-548 94-155 (237)
138 PLN02495 oxidoreductase, actin 76.6 16 0.00035 41.7 10.2 71 514-584 113-193 (385)
139 cd00717 URO-D Uroporphyrinogen 76.5 62 0.0013 35.5 14.5 130 525-667 175-334 (335)
140 TIGR01464 hemE uroporphyrinoge 76.5 63 0.0014 35.5 14.6 96 525-633 178-284 (338)
141 cd03307 Mta_CmuA_like MtaA_Cmu 76.3 65 0.0014 35.3 14.6 100 526-635 170-276 (326)
142 TIGR01036 pyrD_sub2 dihydrooro 76.3 29 0.00062 38.8 11.9 69 514-583 134-220 (335)
143 PRK07259 dihydroorotate dehydr 76.1 12 0.00027 40.4 8.9 34 514-548 157-190 (301)
144 COG0134 TrpC Indole-3-glycerol 76.1 4.4 9.6E-05 43.8 5.3 64 512-581 43-115 (254)
145 PRK08673 3-deoxy-7-phosphohept 75.9 40 0.00087 37.9 12.9 65 512-578 91-162 (335)
146 cd04724 Tryptophan_synthase_al 75.3 47 0.001 35.2 12.7 64 518-582 5-87 (242)
147 cd02932 OYE_YqiM_FMN Old yello 75.0 17 0.00038 40.1 9.8 83 511-599 218-310 (336)
148 PF00478 IMPDH: IMP dehydrogen 74.9 9.7 0.00021 43.0 7.8 157 456-652 63-242 (352)
149 TIGR02321 Pphn_pyruv_hyd phosp 74.8 61 0.0013 35.8 13.7 146 514-667 15-203 (290)
150 cd02811 IDI-2_FMN Isopentenyl- 74.8 1.1E+02 0.0025 33.9 16.0 83 513-599 111-200 (326)
151 PRK00115 hemE uroporphyrinogen 74.5 74 0.0016 35.3 14.6 130 525-667 184-342 (346)
152 TIGR03217 4OH_2_O_val_ald 4-hy 74.0 1.6E+02 0.0034 33.1 17.2 126 531-665 91-242 (333)
153 PRK08649 inosine 5-monophospha 74.0 21 0.00045 40.6 10.2 127 515-656 132-291 (368)
154 cd00465 URO-D_CIMS_like The UR 73.2 61 0.0013 34.7 13.2 102 526-635 143-254 (306)
155 COG2513 PrpB PEP phosphonomuta 73.1 10 0.00022 41.9 7.1 61 525-597 164-226 (289)
156 PF11717 Tudor-knot: RNA bindi 73.0 1.6 3.4E-05 36.2 0.8 52 357-408 1-54 (55)
157 COG4981 Enoyl reductase domain 72.9 11 0.00023 44.9 7.6 94 517-618 127-232 (717)
158 PRK08883 ribulose-phosphate 3- 72.6 45 0.00097 35.2 11.7 112 516-653 84-198 (220)
159 COG5475 Uncharacterized small 72.3 6.4 0.00014 33.5 4.2 54 355-412 3-56 (60)
160 cd01295 AdeC Adenine deaminase 72.2 15 0.00032 41.8 8.6 76 530-609 26-110 (422)
161 cd02933 OYE_like_FMN Old yello 72.0 20 0.00044 39.9 9.5 87 523-618 237-328 (338)
162 cd03308 CmuA_CmuC_like CmuA_Cm 71.9 74 0.0016 36.0 14.0 133 525-667 212-377 (378)
163 PRK11320 prpB 2-methylisocitra 71.7 72 0.0016 35.3 13.4 129 533-666 30-201 (292)
164 PRK09490 metH B12-dependent me 71.4 90 0.002 40.9 15.9 154 513-680 208-392 (1229)
165 PRK13111 trpA tryptophan synth 71.3 1E+02 0.0023 33.3 14.3 99 517-618 16-135 (258)
166 TIGR02090 LEU1_arch isopropylm 70.9 1.9E+02 0.0041 32.7 19.2 260 463-742 15-331 (363)
167 TIGR01769 GGGP geranylgeranylg 70.6 14 0.00029 38.9 7.2 51 527-583 11-61 (205)
168 PF05690 ThiG: Thiazole biosyn 70.6 84 0.0018 34.1 13.0 143 513-666 61-220 (247)
169 PLN02826 dihydroorotate dehydr 70.6 93 0.002 36.0 14.5 143 515-664 187-386 (409)
170 PRK05567 inosine 5'-monophosph 69.9 52 0.0011 38.5 12.6 127 512-653 214-363 (486)
171 TIGR02151 IPP_isom_2 isopenten 69.6 1.6E+02 0.0035 32.8 15.7 82 514-599 113-201 (333)
172 PF01207 Dus: Dihydrouridine s 69.4 19 0.00041 39.6 8.4 142 514-661 53-225 (309)
173 cd03309 CmuC_like CmuC_like. P 69.0 52 0.0011 36.6 11.7 100 525-634 153-266 (321)
174 cd04508 TUDOR Tudor domains ar 68.9 3.8 8.2E-05 32.1 2.2 46 360-408 1-47 (48)
175 PRK14042 pyruvate carboxylase 68.8 2.8E+02 0.0061 33.8 19.4 159 518-686 87-275 (596)
176 PRK08195 4-hyroxy-2-oxovalerat 68.6 1.6E+02 0.0035 33.0 15.5 126 531-665 92-243 (337)
177 PRK00748 1-(5-phosphoribosyl)- 68.5 82 0.0018 32.5 12.5 129 514-653 74-223 (233)
178 PRK06806 fructose-bisphosphate 68.5 14 0.00031 40.3 7.2 118 450-601 98-223 (281)
179 PF00218 IGPS: Indole-3-glycer 68.4 26 0.00057 37.9 9.0 122 514-653 109-241 (254)
180 PRK07998 gatY putative fructos 68.2 1.6E+02 0.0035 32.5 15.1 139 514-667 74-241 (283)
181 PLN02460 indole-3-glycerol-pho 68.1 9.3 0.0002 43.0 5.7 48 528-581 140-189 (338)
182 PRK13957 indole-3-glycerol-pho 67.9 10 0.00022 40.9 5.8 62 527-600 61-123 (247)
183 PRK15063 isocitrate lyase; Pro 67.9 21 0.00046 41.4 8.6 67 525-597 263-331 (428)
184 TIGR01163 rpe ribulose-phospha 67.7 1.2E+02 0.0025 30.6 13.1 124 515-654 57-197 (210)
185 PLN02460 indole-3-glycerol-pho 67.7 42 0.0009 38.0 10.6 108 532-653 195-320 (338)
186 COG0327 Uncharacterized conser 67.7 35 0.00076 36.7 9.8 129 516-650 38-196 (250)
187 PRK04161 tagatose 1,6-diphosph 67.6 75 0.0016 35.9 12.4 138 532-677 112-299 (329)
188 PRK09722 allulose-6-phosphate 67.2 1E+02 0.0022 32.9 13.0 127 516-667 85-216 (229)
189 KOG1819|consensus 67.0 2.5 5.4E-05 49.0 1.1 7 250-256 614-620 (990)
190 PRK13802 bifunctional indole-3 66.4 53 0.0011 40.5 12.0 108 532-654 125-244 (695)
191 TIGR01361 DAHP_synth_Bsub phos 66.4 85 0.0018 33.9 12.4 63 513-578 24-94 (260)
192 TIGR01037 pyrD_sub1_fam dihydr 66.3 30 0.00065 37.4 9.1 35 514-549 157-191 (300)
193 COG0167 PyrD Dihydroorotate de 66.0 75 0.0016 35.5 12.1 122 514-666 161-288 (310)
194 TIGR01463 mtaA_cmuA methyltran 65.9 2E+02 0.0042 31.7 15.4 100 525-634 178-286 (340)
195 PLN02746 hydroxymethylglutaryl 65.8 1.7E+02 0.0036 33.3 15.0 135 529-666 123-302 (347)
196 TIGR01302 IMP_dehydrog inosine 65.6 52 0.0011 38.2 11.3 125 517-653 213-359 (450)
197 TIGR00262 trpA tryptophan synt 65.4 1.3E+02 0.0028 32.5 13.5 67 517-583 14-99 (256)
198 PRK00311 panB 3-methyl-2-oxobu 65.1 11 0.00025 40.8 5.6 82 501-597 139-221 (264)
199 PRK08185 hypothetical protein; 64.3 32 0.00068 37.9 8.8 56 537-601 159-221 (283)
200 TIGR01182 eda Entner-Doudoroff 63.8 59 0.0013 34.2 10.3 132 517-681 60-200 (204)
201 PLN02274 inosine-5'-monophosph 63.8 38 0.00083 40.0 9.9 131 512-659 234-389 (505)
202 TIGR02082 metH 5-methyltetrahy 62.4 2.8E+02 0.006 36.6 17.7 154 513-680 192-376 (1178)
203 cd02810 DHOD_DHPD_FMN Dihydroo 62.3 24 0.00052 37.7 7.4 35 514-548 162-197 (289)
204 PRK07226 fructose-bisphosphate 62.1 19 0.00041 38.6 6.5 54 514-569 196-251 (267)
205 PF02679 ComA: (2R)-phospho-3- 62.0 24 0.00052 38.1 7.2 86 464-583 107-206 (244)
206 PF01261 AP_endonuc_2: Xylose 62.0 39 0.00085 33.0 8.3 78 526-603 70-159 (213)
207 PRK02615 thiamine-phosphate py 61.2 36 0.00078 38.5 8.7 71 517-599 241-313 (347)
208 PRK13396 3-deoxy-7-phosphohept 60.4 1.9E+02 0.0042 33.0 14.2 62 515-578 102-170 (352)
209 PF01081 Aldolase: KDPG and KH 60.3 53 0.0012 34.3 9.2 128 517-677 60-196 (196)
210 PRK06512 thiamine-phosphate py 60.2 41 0.00088 35.5 8.4 70 517-599 111-183 (221)
211 PRK08745 ribulose-phosphate 3- 60.1 1.3E+02 0.0029 31.9 12.3 113 516-654 88-203 (223)
212 COG0036 Rpe Pentose-5-phosphat 60.1 1.1E+02 0.0023 32.9 11.4 114 517-656 88-203 (220)
213 TIGR00587 nfo apurinic endonuc 59.5 58 0.0013 34.9 9.7 82 526-609 87-178 (274)
214 PRK05664 threonine-phosphate d 59.2 1.8E+02 0.0039 31.6 13.6 83 516-609 66-164 (330)
215 TIGR01304 IMP_DH_rel_2 IMP deh 58.9 81 0.0018 36.0 11.1 118 526-654 141-288 (369)
216 PRK09261 phospho-2-dehydro-3-d 58.8 1.4E+02 0.0031 34.0 12.7 104 512-618 51-200 (349)
217 cd04740 DHOD_1B_like Dihydroor 58.8 47 0.001 35.8 8.9 35 514-549 154-188 (296)
218 PRK12331 oxaloacetate decarbox 58.4 2.8E+02 0.0061 32.5 15.5 159 518-687 87-276 (448)
219 PRK12399 tagatose 1,6-diphosph 58.3 2E+02 0.0044 32.5 13.6 137 533-677 111-297 (324)
220 PRK13802 bifunctional indole-3 58.3 20 0.00043 44.0 6.5 62 514-581 49-119 (695)
221 TIGR01949 AroFGH_arch predicte 57.8 25 0.00055 37.4 6.6 55 513-569 191-247 (258)
222 PRK06843 inosine 5-monophospha 57.2 1E+02 0.0022 35.7 11.6 128 511-652 138-287 (404)
223 PF13407 Peripla_BP_4: Peripla 56.7 22 0.00047 36.2 5.7 55 520-582 35-89 (257)
224 TIGR00222 panB 3-methyl-2-oxob 56.7 20 0.00044 39.0 5.6 67 520-597 153-220 (263)
225 COG2159 Predicted metal-depend 56.5 45 0.00097 36.6 8.3 74 528-603 114-193 (293)
226 PRK07114 keto-hydroxyglutarate 56.3 1.7E+02 0.0037 31.2 12.3 133 517-682 71-213 (222)
227 TIGR02708 L_lactate_ox L-lacta 56.3 1.7E+02 0.0037 33.5 13.0 33 516-548 134-167 (367)
228 PRK04180 pyridoxal biosynthesi 56.2 1.3E+02 0.0029 33.4 11.7 162 514-711 121-293 (293)
229 TIGR02319 CPEP_Pphonmut carbox 56.1 1.9E+02 0.0042 32.1 13.1 83 517-609 19-112 (294)
230 cd06557 KPHMT-like Ketopantoat 55.9 19 0.00041 39.0 5.2 79 501-594 136-215 (254)
231 PRK12330 oxaloacetate decarbox 55.9 3.3E+02 0.0072 32.5 15.7 119 518-645 88-227 (499)
232 PLN02495 oxidoreductase, actin 55.6 1.1E+02 0.0023 35.3 11.3 39 514-553 182-220 (385)
233 PRK09427 bifunctional indole-3 55.1 17 0.00038 42.3 5.1 47 528-581 71-118 (454)
234 TIGR02708 L_lactate_ox L-lacta 55.0 92 0.002 35.6 10.6 29 514-548 228-257 (367)
235 cd04732 HisA HisA. Phosphorib 54.8 2.6E+02 0.0056 28.8 13.4 125 514-653 73-222 (234)
236 cd04735 OYE_like_4_FMN Old yel 54.7 54 0.0012 36.7 8.8 71 523-599 231-304 (353)
237 PRK08091 ribulose-phosphate 3- 54.6 1.9E+02 0.0042 30.9 12.4 112 516-653 94-210 (228)
238 TIGR02317 prpB methylisocitrat 54.0 2.4E+02 0.0051 31.2 13.3 49 533-582 26-81 (285)
239 cd08211 RuBisCO_large_II Ribul 54.0 1.2E+02 0.0027 35.5 11.6 38 511-548 221-263 (439)
240 COG1646 Predicted phosphate-bi 54.0 30 0.00064 37.3 6.1 50 527-580 28-77 (240)
241 COG1448 TyrB Aspartate/tyrosin 53.9 3.8E+02 0.0082 31.2 15.0 113 549-664 148-277 (396)
242 cd02801 DUS_like_FMN Dihydrour 53.9 27 0.00059 35.8 5.8 79 515-601 124-205 (231)
243 PRK09389 (R)-citramalate synth 53.8 4.4E+02 0.0096 31.2 18.2 283 462-785 16-332 (488)
244 TIGR00737 nifR3_yhdG putative 53.7 46 0.001 36.5 7.9 78 515-599 132-212 (319)
245 PF03437 BtpA: BtpA family; I 53.6 71 0.0015 34.7 9.1 77 531-619 162-250 (254)
246 PRK08999 hypothetical protein; 53.6 53 0.0012 35.5 8.3 78 517-606 227-308 (312)
247 PRK12755 phospho-2-dehydro-3-d 53.4 1.8E+02 0.004 33.2 12.5 104 512-618 52-201 (353)
248 cd04722 TIM_phosphate_binding 53.4 45 0.00097 32.0 7.0 65 514-582 57-123 (200)
249 cd04737 LOX_like_FMN L-Lactate 53.2 3.9E+02 0.0085 30.4 15.3 144 527-688 138-335 (351)
250 PRK10415 tRNA-dihydrouridine s 53.1 53 0.0012 36.4 8.3 71 525-606 147-221 (321)
251 PRK06252 methylcobalamin:coenz 53.0 1.7E+02 0.0037 32.1 12.2 99 526-634 179-284 (339)
252 TIGR00486 YbgI_SA1388 dinuclea 52.8 1.1E+02 0.0025 32.6 10.4 53 530-583 47-101 (249)
253 PRK07315 fructose-bisphosphate 52.6 44 0.00094 36.9 7.4 116 450-601 100-225 (293)
254 PRK10605 N-ethylmaleimide redu 52.5 67 0.0015 36.3 9.1 86 523-619 244-336 (362)
255 PF02548 Pantoate_transf: Keto 51.6 1.6E+02 0.0035 32.3 11.3 103 518-629 18-135 (261)
256 PRK14057 epimerase; Provisiona 51.4 1.5E+02 0.0033 32.3 11.2 112 516-653 101-224 (254)
257 PLN02979 glycolate oxidase 51.3 1.3E+02 0.0027 34.6 10.9 29 514-548 223-252 (366)
258 PRK12999 pyruvate carboxylase; 51.3 6.7E+02 0.015 33.0 18.6 119 526-653 625-772 (1146)
259 cd00452 KDPG_aldolase KDPG and 51.1 59 0.0013 33.0 7.7 72 514-607 97-169 (190)
260 cd03315 MLE_like Muconate lact 51.1 1.5E+02 0.0033 31.3 11.1 103 514-631 129-237 (265)
261 PF01208 URO-D: Uroporphyrinog 50.7 1.6E+02 0.0034 32.2 11.4 131 525-667 180-341 (343)
262 PLN02591 tryptophan synthase 50.6 1.8E+02 0.0038 31.6 11.5 90 517-609 6-113 (250)
263 PRK13397 3-deoxy-7-phosphohept 50.5 3.7E+02 0.008 29.3 13.9 63 513-578 14-84 (250)
264 smart00518 AP2Ec AP endonuclea 50.5 78 0.0017 33.3 8.8 81 529-609 86-174 (273)
265 TIGR00735 hisF imidazoleglycer 50.5 59 0.0013 34.6 7.9 87 523-619 151-247 (254)
266 TIGR03151 enACPred_II putative 50.4 41 0.00088 37.1 6.8 72 514-598 109-180 (307)
267 PRK13523 NADPH dehydrogenase N 50.3 77 0.0017 35.5 9.0 71 523-599 223-295 (337)
268 PRK11197 lldD L-lactate dehydr 50.2 3.8E+02 0.0083 30.9 14.6 23 525-547 133-155 (381)
269 PRK07392 threonine-phosphate d 50.2 1.6E+02 0.0035 32.3 11.4 121 517-644 77-227 (360)
270 TIGR00034 aroFGH phospho-2-deh 49.9 4.5E+02 0.0097 30.1 15.5 105 512-616 46-193 (344)
271 PRK01033 imidazole glycerol ph 49.7 96 0.0021 33.2 9.4 128 514-656 74-232 (258)
272 TIGR03572 WbuZ glycosyl amidat 49.6 40 0.00086 35.0 6.3 65 526-598 152-216 (232)
273 cd04731 HisF The cyclase subun 49.4 1.1E+02 0.0023 32.1 9.5 132 514-656 71-229 (243)
274 PRK08005 epimerase; Validated 49.1 2E+02 0.0043 30.4 11.3 110 516-653 84-194 (210)
275 cd02940 DHPD_FMN Dihydropyrimi 49.0 58 0.0013 35.5 7.7 38 514-552 168-205 (299)
276 PRK08255 salicylyl-CoA 5-hydro 48.5 72 0.0016 39.4 9.2 71 523-599 634-707 (765)
277 PRK10528 multifunctional acyl- 48.4 44 0.00094 33.6 6.2 49 527-577 95-146 (191)
278 COG2022 ThiG Uncharacterized e 48.3 4.1E+02 0.0088 29.2 14.1 141 514-665 69-226 (262)
279 PRK01060 endonuclease IV; Prov 48.2 1.2E+02 0.0027 32.0 9.8 72 527-599 89-166 (281)
280 cd01967 Nitrogenase_MoFe_alpha 47.9 41 0.00088 37.8 6.5 109 517-631 67-195 (406)
281 PRK05198 2-dehydro-3-deoxyphos 47.9 3.3E+02 0.0071 30.1 12.9 99 514-615 10-141 (264)
282 PRK07695 transcriptional regul 47.7 54 0.0012 33.4 6.8 72 517-600 96-169 (201)
283 PRK09432 metF 5,10-methylenete 47.5 4.3E+02 0.0093 29.2 14.5 198 514-714 82-295 (296)
284 CHL00200 trpA tryptophan synth 47.4 4.1E+02 0.0089 29.0 15.7 90 517-609 19-126 (263)
285 cd07937 DRE_TIM_PC_TC_5S Pyruv 47.0 97 0.0021 33.5 9.0 72 521-597 112-183 (275)
286 cd07938 DRE_TIM_HMGL 3-hydroxy 46.6 2.7E+02 0.0059 30.3 12.3 216 462-683 12-274 (274)
287 PRK14040 oxaloacetate decarbox 46.6 6.3E+02 0.014 30.9 19.2 145 530-686 100-276 (593)
288 PRK07107 inosine 5-monophospha 46.5 2.1E+02 0.0046 34.0 12.3 127 511-651 228-382 (502)
289 COG0134 TrpC Indole-3-glycerol 46.2 73 0.0016 34.7 7.8 106 532-652 121-238 (254)
290 PLN02489 homocysteine S-methyl 46.2 3.7E+02 0.0081 30.2 13.6 97 514-619 208-329 (335)
291 PRK12457 2-dehydro-3-deoxyphos 46.1 3.6E+02 0.0077 30.1 12.9 92 515-609 17-138 (281)
292 PF10566 Glyco_hydro_97: Glyco 46.1 1.3E+02 0.0028 33.1 9.7 81 523-609 28-126 (273)
293 PF02581 TMP-TENI: Thiamine mo 46.1 30 0.00066 34.7 4.7 56 518-578 97-154 (180)
294 cd07944 DRE_TIM_HOA_like 4-hyd 46.0 87 0.0019 33.8 8.4 73 519-598 101-173 (266)
295 cd06346 PBP1_ABC_ligand_bindin 46.0 4E+02 0.0086 28.4 14.6 99 516-619 112-213 (312)
296 cd04747 OYE_like_5_FMN Old yel 45.8 52 0.0011 37.3 6.9 55 523-578 231-285 (361)
297 PRK06015 keto-hydroxyglutarate 45.8 2.5E+02 0.0055 29.5 11.4 131 517-680 56-195 (201)
298 PRK02610 histidinol-phosphate 45.7 2.7E+02 0.0058 30.8 12.4 122 517-644 94-245 (374)
299 PRK02412 aroD 3-dehydroquinate 45.7 4.1E+02 0.0089 28.5 14.4 107 512-619 13-129 (253)
300 PRK11572 copper homeostasis pr 45.7 4.4E+02 0.0095 28.8 13.9 117 530-652 11-150 (248)
301 PRK13475 ribulose bisphosphate 45.6 2.3E+02 0.0049 33.4 12.1 37 511-547 222-263 (443)
302 PRK13587 1-(5-phosphoribosyl)- 45.6 2.9E+02 0.0062 29.4 12.0 125 514-652 76-223 (234)
303 cd08025 RNR_PFL_like_DUF711 Un 45.6 5.6E+02 0.012 30.0 16.1 130 531-677 95-236 (400)
304 PF07304 SRA1: Steroid recepto 45.5 42 0.0009 33.8 5.5 46 657-708 92-137 (157)
305 smart00633 Glyco_10 Glycosyl h 45.5 1.9E+02 0.0041 30.7 10.7 69 511-581 115-190 (254)
306 PRK05286 dihydroorotate dehydr 45.4 54 0.0012 36.6 6.9 37 514-550 211-248 (344)
307 cd04736 MDH_FMN Mandelate dehy 45.3 61 0.0013 36.9 7.3 30 515-550 237-267 (361)
308 PRK08227 autoinducer 2 aldolas 44.9 64 0.0014 35.3 7.1 56 512-569 190-246 (264)
309 cd04727 pdxS PdxS is a subunit 44.8 4.3E+02 0.0093 29.5 13.3 138 514-678 112-258 (283)
310 cd00578 L-fuc_L-ara-isomerases 44.8 2.3E+02 0.0051 32.6 12.1 52 524-583 47-98 (452)
311 cd04730 NPD_like 2-Nitropropan 44.8 2E+02 0.0043 29.6 10.5 118 516-654 55-189 (236)
312 PRK08318 dihydropyrimidine deh 44.7 70 0.0015 36.5 7.8 38 514-552 168-205 (420)
313 TIGR01303 IMP_DH_rel_1 IMP deh 44.7 1.3E+02 0.0027 35.6 10.0 113 526-651 223-358 (475)
314 PRK10799 metal-binding protein 44.6 1.1E+02 0.0023 32.7 8.7 54 529-584 45-101 (247)
315 cd00452 KDPG_aldolase KDPG and 44.4 3.6E+02 0.0077 27.4 12.6 112 517-652 56-173 (190)
316 PLN02493 probable peroxisomal 44.3 1.8E+02 0.0039 33.3 10.8 29 514-548 224-253 (367)
317 TIGR00007 phosphoribosylformim 44.2 3.6E+02 0.0077 27.9 12.3 124 515-653 73-221 (230)
318 COG0107 HisF Imidazoleglycerol 44.0 55 0.0012 35.5 6.2 66 509-578 11-79 (256)
319 PF01784 NIF3: NIF3 (NGG1p int 43.9 44 0.00095 35.4 5.7 53 530-583 43-98 (241)
320 PF04909 Amidohydro_2: Amidohy 43.6 11 0.00023 38.7 1.0 95 513-609 70-171 (273)
321 PRK07565 dihydroorotate dehydr 43.6 66 0.0014 35.7 7.2 37 514-551 165-201 (334)
322 PRK05458 guanosine 5'-monophos 43.5 5.3E+02 0.012 29.1 15.2 119 518-652 87-232 (326)
323 PF01070 FMN_dh: FMN-dependent 43.3 2.6E+02 0.0057 31.7 11.9 119 524-651 120-310 (356)
324 TIGR01362 KDO8P_synth 3-deoxy- 43.3 4.1E+02 0.0088 29.3 12.7 98 515-615 3-133 (258)
325 TIGR01178 ade adenine deaminas 43.2 76 0.0017 37.9 8.1 76 531-609 68-151 (552)
326 cd03174 DRE_TIM_metallolyase D 43.1 1E+02 0.0023 32.1 8.3 56 520-578 137-195 (265)
327 PRK05313 hypothetical protein; 43.0 6.4E+02 0.014 29.9 15.7 133 530-676 98-241 (452)
328 COG1902 NemA NADH:flavin oxido 42.9 1E+02 0.0023 35.1 8.7 91 523-619 233-333 (363)
329 COG0159 TrpA Tryptophan syntha 42.8 3.9E+02 0.0085 29.5 12.6 92 515-609 19-129 (265)
330 cd07941 DRE_TIM_LeuA3 Desulfob 42.7 2.9E+02 0.0062 29.9 11.7 139 523-667 16-190 (273)
331 PRK08508 biotin synthase; Prov 42.7 3E+02 0.0064 29.9 11.8 54 523-579 133-188 (279)
332 PRK00748 1-(5-phosphoribosyl)- 42.6 62 0.0013 33.4 6.4 72 526-606 145-217 (233)
333 COG0352 ThiE Thiamine monophos 42.5 81 0.0018 33.3 7.3 78 517-606 105-186 (211)
334 PRK11197 lldD L-lactate dehydr 42.5 1.4E+02 0.003 34.4 9.6 29 514-548 245-274 (381)
335 cd04731 HisF The cyclase subun 42.4 37 0.0008 35.5 4.8 86 526-619 26-115 (243)
336 PRK07028 bifunctional hexulose 42.4 2.9E+02 0.0064 31.7 12.4 109 532-654 73-194 (430)
337 cd07945 DRE_TIM_CMS Leptospira 42.2 4.5E+02 0.0098 28.7 13.2 153 533-685 80-269 (280)
338 TIGR01305 GMP_reduct_1 guanosi 42.1 5.3E+02 0.012 29.5 13.8 122 513-650 96-241 (343)
339 PRK13957 indole-3-glycerol-pho 42.1 3.9E+02 0.0084 29.1 12.4 117 514-652 102-232 (247)
340 cd02922 FCB2_FMN Flavocytochro 41.9 5.5E+02 0.012 29.1 14.1 143 525-688 129-330 (344)
341 cd07372 2A5CPDO_B The beta sub 41.8 1.5E+02 0.0033 32.7 9.5 149 530-681 40-242 (294)
342 TIGR03884 sel_bind_Methan sele 41.6 39 0.00085 30.4 4.0 31 517-548 19-50 (74)
343 TIGR02990 ectoine_eutA ectoine 41.4 1.5E+02 0.0032 31.8 9.2 118 525-654 106-236 (239)
344 PRK01130 N-acetylmannosamine-6 40.9 2.3E+02 0.0049 29.3 10.2 108 525-649 21-145 (221)
345 PRK12595 bifunctional 3-deoxy- 40.9 5.1E+02 0.011 29.6 13.7 106 513-632 117-234 (360)
346 cd04724 Tryptophan_synthase_al 40.7 4.7E+02 0.01 27.8 16.6 122 514-652 76-217 (242)
347 PRK09250 fructose-bisphosphate 40.7 54 0.0012 37.3 5.9 58 512-572 279-340 (348)
348 cd00951 KDGDH 5-dehydro-4-deox 40.6 97 0.0021 33.6 7.8 58 522-579 16-75 (289)
349 COG4464 CapC Capsular polysacc 40.4 1E+02 0.0022 33.3 7.5 74 522-599 15-93 (254)
350 PRK08195 4-hyroxy-2-oxovalerat 40.2 1.2E+02 0.0026 34.0 8.6 70 521-598 138-209 (337)
351 PRK11815 tRNA-dihydrouridine s 40.2 1E+02 0.0022 34.4 8.0 74 520-599 143-225 (333)
352 cd07943 DRE_TIM_HOA 4-hydroxy- 40.1 1.3E+02 0.0028 32.1 8.6 66 525-597 110-175 (263)
353 TIGR01859 fruc_bis_ald_ fructo 40.1 1.4E+02 0.003 32.8 8.8 76 518-606 145-227 (282)
354 TIGR00736 nifR3_rel_arch TIM-b 40.0 1.5E+02 0.0032 31.8 8.8 75 514-598 134-210 (231)
355 TIGR00510 lipA lipoate synthas 39.8 1.3E+02 0.0029 33.3 8.7 56 515-573 211-274 (302)
356 cd00564 TMP_TenI Thiamine mono 39.8 63 0.0014 31.6 5.7 73 517-600 96-170 (196)
357 COG0113 HemB Delta-aminolevuli 39.6 66 0.0014 36.1 6.2 51 523-582 229-279 (330)
358 PF03932 CutC: CutC family; I 39.6 1.8E+02 0.0038 30.7 9.1 99 526-633 71-178 (201)
359 PRK14024 phosphoribosyl isomer 39.5 1.3E+02 0.0027 31.9 8.2 73 525-609 144-222 (241)
360 PRK00507 deoxyribose-phosphate 39.5 2.6E+02 0.0056 29.7 10.5 121 521-645 68-203 (221)
361 PLN02746 hydroxymethylglutaryl 39.3 2.3E+02 0.005 32.2 10.6 69 522-598 192-261 (347)
362 COG2022 ThiG Uncharacterized e 39.2 17 0.00037 39.1 1.7 45 514-566 182-228 (262)
363 cd07939 DRE_TIM_NifV Streptomy 39.0 1.2E+02 0.0027 32.2 8.2 49 525-576 137-185 (259)
364 cd07948 DRE_TIM_HCS Saccharomy 38.9 1.4E+02 0.003 32.3 8.6 55 521-578 135-189 (262)
365 cd01294 DHOase Dihydroorotase 38.8 3.5E+02 0.0076 29.7 11.8 85 517-608 9-96 (335)
366 cd06312 PBP1_ABC_sugar_binding 38.6 1.5E+02 0.0033 30.4 8.6 60 515-582 31-91 (271)
367 PF01207 Dus: Dihydrouridine s 38.5 38 0.00083 37.3 4.3 67 525-598 136-202 (309)
368 PRK06959 putative threonine-ph 38.5 1.1E+02 0.0023 33.7 7.8 82 516-609 73-170 (339)
369 PRK09517 multifunctional thiam 38.4 2.3E+02 0.005 35.2 11.4 84 517-607 102-195 (755)
370 cd01979 Pchlide_reductase_N Pc 38.4 1.2E+02 0.0025 34.5 8.3 106 517-627 65-184 (396)
371 PRK08354 putative aminotransfe 38.4 1.4E+02 0.0031 32.1 8.6 116 516-644 56-193 (311)
372 PRK05458 guanosine 5'-monophos 38.3 1.5E+02 0.0032 33.4 8.9 28 514-547 140-168 (326)
373 PTZ00170 D-ribulose-5-phosphat 38.3 3E+02 0.0065 29.0 10.8 129 514-652 65-203 (228)
374 cd03332 LMO_FMN L-Lactate 2-mo 38.3 1.5E+02 0.0033 34.1 9.1 29 514-548 253-282 (383)
375 TIGR03249 KdgD 5-dehydro-4-deo 38.1 1.1E+02 0.0024 33.2 7.8 58 522-579 21-80 (296)
376 PF04217 DUF412: Protein of un 38.1 12 0.00026 37.3 0.4 31 754-785 81-111 (143)
377 PF04481 DUF561: Protein of un 38.1 83 0.0018 33.9 6.4 34 515-548 15-48 (242)
378 TIGR01232 lacD tagatose 1,6-di 37.8 4.2E+02 0.0091 30.1 12.1 137 533-676 112-297 (325)
379 TIGR00735 hisF imidazoleglycer 37.8 1.8E+02 0.0039 31.0 9.1 36 514-553 74-109 (254)
380 COG0042 tRNA-dihydrouridine sy 37.7 1.4E+02 0.0031 33.3 8.6 99 461-600 112-219 (323)
381 PRK03620 5-dehydro-4-deoxygluc 37.6 1.1E+02 0.0025 33.4 7.8 57 522-578 23-81 (303)
382 PF04412 DUF521: Protein of un 37.5 1.4E+02 0.0031 34.6 8.7 84 510-598 209-309 (400)
383 PRK08185 hypothetical protein; 37.4 84 0.0018 34.6 6.7 85 518-609 15-100 (283)
384 cd00950 DHDPS Dihydrodipicolin 37.3 1.1E+02 0.0024 32.7 7.5 58 522-579 16-75 (284)
385 PTZ00413 lipoate synthase; Pro 37.1 1.8E+02 0.0039 33.8 9.3 29 517-546 301-329 (398)
386 PRK05692 hydroxymethylglutaryl 37.0 1.2E+02 0.0026 33.2 7.8 53 523-578 151-204 (287)
387 PRK05692 hydroxymethylglutaryl 37.0 6E+02 0.013 27.9 14.4 112 531-645 83-226 (287)
388 PLN03033 2-dehydro-3-deoxyphos 37.0 4.8E+02 0.01 29.2 12.2 101 514-617 16-149 (290)
389 COG0800 Eda 2-keto-3-deoxy-6-p 36.9 3.1E+02 0.0067 29.3 10.4 114 516-647 14-130 (211)
390 cd00952 CHBPH_aldolase Trans-o 36.8 1.1E+02 0.0024 33.7 7.5 59 522-580 24-84 (309)
391 PRK14476 nitrogenase molybdenu 36.8 1.2E+02 0.0026 35.4 8.1 107 517-629 72-201 (455)
392 PRK15408 autoinducer 2-binding 36.6 1.4E+02 0.0031 33.0 8.4 60 515-582 54-114 (336)
393 COG3684 LacD Tagatose-1,6-bisp 36.5 2E+02 0.0043 31.9 9.0 116 533-650 117-263 (306)
394 PRK06801 hypothetical protein; 36.4 1.2E+02 0.0025 33.6 7.6 77 518-600 20-96 (286)
395 cd04738 DHOD_2_like Dihydrooro 36.3 1.2E+02 0.0026 33.6 7.8 37 514-550 202-239 (327)
396 TIGR00343 pyridoxal 5'-phospha 36.2 57 0.0012 36.2 5.1 75 513-609 196-274 (287)
397 cd06322 PBP1_ABC_sugar_binding 36.0 1.8E+02 0.004 29.5 8.6 60 515-582 30-89 (267)
398 cd04728 ThiG Thiazole synthase 36.0 96 0.0021 33.8 6.7 52 514-571 175-226 (248)
399 TIGR02313 HpaI-NOT-DapA 2,4-di 35.7 1.2E+02 0.0026 33.0 7.6 57 522-578 16-74 (294)
400 PF03060 NMO: Nitronate monoox 35.7 60 0.0013 36.0 5.3 73 514-598 136-209 (330)
401 cd03332 LMO_FMN L-Lactate 2-mo 35.7 6.1E+02 0.013 29.3 13.4 23 525-547 149-171 (383)
402 PRK00208 thiG thiazole synthas 35.6 1E+02 0.0022 33.7 6.7 52 514-571 175-226 (250)
403 COG0099 RpsM Ribosomal protein 35.5 52 0.0011 32.2 4.2 67 696-766 24-98 (121)
404 cd03174 DRE_TIM_metallolyase D 35.5 5.3E+02 0.012 26.8 12.4 77 524-609 16-96 (265)
405 KOG2748|consensus 35.1 1.6E+02 0.0035 33.6 8.3 40 248-287 160-200 (369)
406 cd00954 NAL N-Acetylneuraminic 34.8 1.3E+02 0.0028 32.6 7.6 57 522-578 16-75 (288)
407 PF00016 RuBisCO_large: Ribulo 34.8 37 0.00081 37.8 3.5 39 510-548 78-116 (309)
408 PRK13384 delta-aminolevulinic 34.8 83 0.0018 35.4 6.1 50 524-582 226-275 (322)
409 cd04739 DHOD_like Dihydroorota 34.7 1E+02 0.0022 34.2 6.9 37 514-551 163-199 (325)
410 KOG0258|consensus 34.6 8.3E+02 0.018 28.8 15.0 128 540-667 160-327 (475)
411 PRK09195 gatY tagatose-bisphos 34.3 1.1E+02 0.0023 33.8 6.9 76 519-600 21-96 (284)
412 PF00490 ALAD: Delta-aminolevu 34.1 94 0.002 35.0 6.4 48 525-581 228-275 (324)
413 COG2100 Predicted Fe-S oxidore 34.1 1E+02 0.0023 35.0 6.7 119 464-607 199-331 (414)
414 cd06302 PBP1_LsrB_Quorum_Sensi 34.0 1.7E+02 0.0037 31.0 8.2 60 515-582 30-90 (298)
415 COG0502 BioB Biotin synthase a 33.9 1.1E+02 0.0023 34.7 6.9 69 524-599 84-152 (335)
416 cd00384 ALAD_PBGS Porphobilino 33.9 92 0.002 35.0 6.3 50 524-582 217-266 (314)
417 PRK09283 delta-aminolevulinic 33.9 93 0.002 35.0 6.3 50 524-582 225-274 (323)
418 TIGR02660 nifV_homocitr homoci 33.8 7.4E+02 0.016 28.0 20.3 261 464-764 44-356 (365)
419 PRK11858 aksA trans-homoaconit 33.7 1.4E+02 0.0031 33.8 8.0 55 521-578 139-193 (378)
420 TIGR01306 GMP_reduct_2 guanosi 33.6 7.5E+02 0.016 28.0 15.8 119 515-651 83-228 (321)
421 PRK00366 ispG 4-hydroxy-3-meth 33.6 1.3E+02 0.0028 34.4 7.4 213 511-746 22-266 (360)
422 cd04730 NPD_like 2-Nitropropan 33.6 1E+02 0.0022 31.8 6.3 74 514-599 102-176 (236)
423 cd04823 ALAD_PBGS_aspartate_ri 33.5 97 0.0021 34.9 6.4 50 524-582 222-271 (320)
424 PRK06801 hypothetical protein; 33.4 7E+02 0.015 27.6 14.0 140 514-667 74-245 (286)
425 cd00947 TBP_aldolase_IIB Tagat 33.0 1.4E+02 0.003 32.9 7.5 77 518-600 15-91 (276)
426 TIGR03217 4OH_2_O_val_ald 4-hy 32.9 1.7E+02 0.0038 32.8 8.4 53 523-578 139-193 (333)
427 TIGR00683 nanA N-acetylneurami 32.9 1.5E+02 0.0031 32.4 7.6 57 523-579 17-76 (290)
428 PRK07028 bifunctional hexulose 32.8 56 0.0012 37.4 4.7 75 514-599 107-181 (430)
429 cd07939 DRE_TIM_NifV Streptomy 32.7 6.3E+02 0.014 26.9 13.6 129 533-665 75-236 (259)
430 TIGR01768 GGGP-family geranylg 32.6 92 0.002 33.3 5.9 49 528-583 15-63 (223)
431 COG0434 SgcQ Predicted TIM-bar 32.6 97 0.0021 33.8 6.0 50 527-579 34-91 (263)
432 cd00408 DHDPS-like Dihydrodipi 32.5 1.5E+02 0.0033 31.5 7.7 58 523-580 14-73 (281)
433 TIGR01858 tag_bisphos_ald clas 32.5 1.3E+02 0.0028 33.2 7.2 77 518-600 18-94 (282)
434 COG0436 Aspartate/tyrosine/aro 32.5 2E+02 0.0044 32.7 9.0 90 517-609 92-203 (393)
435 COG2876 AroA 3-deoxy-D-arabino 32.3 1E+02 0.0022 34.0 6.2 75 515-599 46-127 (286)
436 TIGR03586 PseI pseudaminic aci 32.3 56 0.0012 36.6 4.4 31 514-544 1-34 (327)
437 PF01068 DNA_ligase_A_M: ATP d 32.1 95 0.0021 31.1 5.7 56 465-548 129-184 (202)
438 PLN02535 glycolate oxidase 32.1 5.1E+02 0.011 29.8 11.9 29 514-548 223-252 (364)
439 PRK05096 guanosine 5'-monophos 32.0 6.2E+02 0.013 29.0 12.4 142 465-651 77-243 (346)
440 TIGR02637 RhaS rhamnose ABC tr 31.9 1.9E+02 0.0042 30.4 8.2 55 520-582 36-90 (302)
441 PF10113 Fibrillarin_2: Fibril 31.8 2E+02 0.0043 33.8 8.5 53 515-571 222-274 (505)
442 TIGR00674 dapA dihydrodipicoli 31.7 1.5E+02 0.0034 31.9 7.6 58 522-579 14-73 (285)
443 TIGR01093 aroD 3-dehydroquinat 31.6 1.9E+02 0.0042 30.3 8.0 70 511-582 115-188 (228)
444 PF09465 LBR_tudor: Lamin-B re 31.6 43 0.00092 28.6 2.5 41 354-395 3-44 (55)
445 PF03932 CutC: CutC family; I 31.5 2.3E+02 0.005 29.8 8.5 120 530-652 10-149 (201)
446 PRK12737 gatY tagatose-bisphos 31.4 1.3E+02 0.0029 33.1 7.0 77 518-600 20-96 (284)
447 cd06334 PBP1_ABC_ligand_bindin 31.3 7.4E+02 0.016 27.2 18.0 130 515-650 109-249 (351)
448 PLN02428 lipoic acid synthase 31.2 2.3E+02 0.0051 32.2 9.0 30 516-546 252-281 (349)
449 cd01539 PBP1_GGBP Periplasmic 31.0 2.4E+02 0.0051 30.0 8.7 61 514-582 31-91 (303)
450 cd03316 MR_like Mandelate race 30.9 2.1E+02 0.0045 31.6 8.5 105 513-632 188-298 (357)
451 PLN02826 dihydroorotate dehydr 30.7 1.6E+02 0.0036 34.0 7.9 42 513-554 261-303 (409)
452 PTZ00372 endonuclease 4-like p 30.7 2.9E+02 0.0063 32.3 9.8 73 526-598 217-294 (413)
453 cd07898 Adenylation_DNA_ligase 30.6 1.2E+02 0.0027 30.9 6.3 58 465-550 126-183 (201)
454 PF15057 DUF4537: Domain of un 30.4 62 0.0013 31.3 3.8 56 354-412 53-114 (124)
455 cd06317 PBP1_ABC_sugar_binding 30.3 2E+02 0.0043 29.3 7.8 61 515-583 31-91 (275)
456 PF01487 DHquinase_I: Type I 3 30.3 1.5E+02 0.0031 30.8 6.8 75 521-597 4-80 (224)
457 PF00701 DHDPS: Dihydrodipicol 30.3 1.1E+02 0.0023 33.0 6.0 58 522-579 17-76 (289)
458 TIGR03569 NeuB_NnaB N-acetylne 30.2 58 0.0013 36.6 4.1 28 517-544 3-33 (329)
459 PLN02493 probable peroxisomal 30.2 9E+02 0.02 27.9 14.0 23 525-547 133-155 (367)
460 PF06506 PrpR_N: Propionate ca 30.1 2.8E+02 0.0061 27.8 8.7 116 523-649 16-149 (176)
461 COG0800 Eda 2-keto-3-deoxy-6-p 30.1 6E+02 0.013 27.2 11.2 136 516-683 64-207 (211)
462 PLN02540 methylenetetrahydrofo 30.0 4.6E+02 0.01 31.9 11.6 194 514-711 58-285 (565)
463 cd06311 PBP1_ABC_sugar_binding 30.0 2.2E+02 0.0049 29.2 8.1 60 515-582 35-94 (274)
464 PRK12857 fructose-1,6-bisphosp 29.9 1.4E+02 0.0031 32.9 6.9 77 518-600 20-96 (284)
465 COG0821 gcpE 1-hydroxy-2-methy 29.9 1.6E+02 0.0035 33.5 7.3 210 511-746 16-259 (361)
466 cd07940 DRE_TIM_IPMS 2-isoprop 29.8 2E+02 0.0043 30.8 8.0 40 527-569 114-153 (268)
467 cd02803 OYE_like_FMN_family Ol 29.7 7.6E+02 0.016 26.9 13.5 73 526-598 140-234 (327)
468 cd04824 eu_ALAD_PBGS_cysteine_ 29.6 1.2E+02 0.0026 34.2 6.2 51 523-582 221-272 (320)
469 TIGR01975 isoAsp_dipep isoaspa 29.6 1.4E+02 0.0031 34.0 7.1 34 515-548 91-129 (389)
470 cd02808 GltS_FMN Glutamate syn 29.5 5.6E+02 0.012 29.4 11.9 110 545-660 186-324 (392)
471 PRK06852 aldolase; Validated 29.5 1.3E+02 0.0028 33.6 6.6 55 512-568 228-286 (304)
472 TIGR00612 ispG_gcpE 1-hydroxy- 29.4 1.7E+02 0.0037 33.3 7.4 212 511-746 14-257 (346)
473 PRK03170 dihydrodipicolinate s 29.4 1.8E+02 0.0039 31.4 7.6 57 523-579 18-76 (292)
474 cd03319 L-Ala-DL-Glu_epimerase 29.4 7.4E+02 0.016 26.9 12.4 108 512-633 121-236 (316)
475 TIGR00640 acid_CoA_mut_C methy 29.4 2.5E+02 0.0055 27.3 7.9 86 563-654 20-116 (132)
476 PF00682 HMGL-like: HMGL-like 29.4 1.2E+02 0.0027 31.3 6.2 51 524-577 134-185 (237)
477 CHL00162 thiG thiamin biosynth 29.3 1.5E+02 0.0032 32.6 6.8 50 514-569 189-238 (267)
478 PRK04147 N-acetylneuraminate l 29.3 1.8E+02 0.0039 31.6 7.6 57 522-578 19-78 (293)
479 PF09926 DUF2158: Uncharacteri 29.3 84 0.0018 26.5 3.9 36 357-396 1-41 (53)
480 cd06308 PBP1_sensor_kinase_lik 29.3 2.2E+02 0.0048 29.1 7.9 60 515-582 31-90 (270)
481 cd06315 PBP1_ABC_sugar_binding 29.2 3E+02 0.0065 28.6 9.0 60 515-582 31-90 (280)
482 COG1830 FbaB DhnA-type fructos 29.2 1.6E+02 0.0036 32.3 7.1 53 515-569 203-257 (265)
483 cd00019 AP2Ec AP endonuclease 29.1 3.3E+02 0.0072 28.8 9.5 84 526-609 84-177 (279)
484 PRK14041 oxaloacetate decarbox 29.0 1E+03 0.022 28.2 15.9 167 514-688 82-276 (467)
485 PRK01816 hypothetical protein; 29.0 22 0.00047 35.6 0.5 31 754-785 80-110 (143)
486 cd07900 Adenylation_DNA_ligase 29.0 1.3E+02 0.0029 31.4 6.3 58 465-550 141-198 (219)
487 TIGR01283 nifE nitrogenase mol 28.9 2E+02 0.0043 33.3 8.3 110 517-632 101-233 (456)
488 cd00959 DeoC 2-deoxyribose-5-p 28.8 2.5E+02 0.0054 28.9 8.2 33 516-548 120-152 (203)
489 PLN02417 dihydrodipicolinate s 28.8 1.8E+02 0.004 31.4 7.5 58 522-579 17-76 (280)
490 PHA03420 E4 protein; Provision 28.8 33 0.00072 33.5 1.6 13 202-214 51-63 (137)
491 PRK12738 kbaY tagatose-bisphos 28.7 1.7E+02 0.0036 32.4 7.2 76 519-600 21-96 (286)
492 PRK04302 triosephosphate isome 28.6 6.9E+02 0.015 26.0 14.2 47 525-583 17-66 (223)
493 cd01976 Nitrogenase_MoFe_alpha 28.6 4.2E+02 0.009 30.6 10.7 99 517-619 78-195 (421)
494 PRK03317 histidinol-phosphate 28.4 7.4E+02 0.016 27.2 12.3 90 517-609 91-197 (368)
495 cd03319 L-Ala-DL-Glu_epimerase 28.4 4.4E+02 0.0096 28.7 10.4 103 514-631 177-285 (316)
496 PLN02304 probable pectinestera 28.4 25 0.00054 40.2 0.9 13 385-397 198-210 (379)
497 cd00381 IMPDH IMPDH: The catal 28.3 2.5E+02 0.0054 31.3 8.6 28 514-546 135-162 (325)
498 PRK01533 histidinol-phosphate 28.2 5.2E+02 0.011 28.8 11.1 118 517-644 84-233 (366)
499 cd01311 PDC_hydrolase 2-pyrone 28.1 1.9E+02 0.0042 30.6 7.4 67 531-609 32-100 (263)
500 PRK12928 lipoyl synthase; Prov 28.0 2.8E+02 0.0061 30.5 8.8 83 468-578 186-276 (290)
No 1
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=100.00 E-value=2.6e-49 Score=419.43 Aligned_cols=251 Identities=25% Similarity=0.380 Sum_probs=232.7
Q ss_pred ceeee---cCCCCCCCHHHHHHHHHhCCCCCccCCCccccccCCCCCCCCCCCCCccccCCCCeEEEeCCCCCHHHHHHH
Q psy11975 456 SHYFK---AHSSTSMPIQKRKSLLRKFPLWPELEPSTSELKRSDRPMSVGPRSVRPSEREWQADLLKPQKHTTTRATIDL 532 (786)
Q Consensus 456 ~Gvf~---agE~~sLT~dER~~Lle~~~~wve~~a~~~e~~~~~~~~~~~~r~v~veevaGRVPVIaGVGa~ST~EAIEL 532 (786)
.|+|. +||+.+||.+||++|++. |++ +++||+|||+||++++++|++++
T Consensus 36 ~gi~v~GstGE~~~Ls~~Er~~l~~~---~~~-------------------------~~~g~~pvi~gv~~~~t~~ai~~ 87 (294)
T TIGR02313 36 HAISVGGTSGEPGSLTLEERKQAIEN---AID-------------------------QIAGRIPFAPGTGALNHDETLEL 87 (294)
T ss_pred CEEEECccCcccccCCHHHHHHHHHH---HHH-------------------------HhCCCCcEEEECCcchHHHHHHH
Confidence 46665 899999999999999998 543 46789999999999999999999
Q ss_pred HHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHhcC-CCCEEEEeCCCCcCCccCHHHHHHHH-hCCCEEEEEeC-
Q psy11975 533 TQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNS-PIPVIIYNNTFVTNIDISVDTLVKLA-HHENIRGVKDT- 609 (786)
Q Consensus 533 Ar~Ae~aGADAVmViPPyY~kps~S~eeLv~YFraIAeAt-dLPIiLYNiP~~TGv~LSpelL~rLA-eiPNVVGIKDS- 609 (786)
+++|+++|||++|++||+|++++ ++++++||++|++++ ++||++||+|.++|++++++++.+|+ ++|||+|||++
T Consensus 88 a~~A~~~Gad~v~v~pP~y~~~~--~~~l~~~f~~ia~a~~~lpv~iYn~P~~tg~~l~~~~l~~L~~~~pnv~giK~ss 165 (294)
T TIGR02313 88 TKFAEEAGADAAMVIVPYYNKPN--QEALYDHFAEVADAVPDFPIIIYNIPGRAAQEIAPKTMARLRKDCPNIVGAKESN 165 (294)
T ss_pred HHHHHHcCCCEEEEcCccCCCCC--HHHHHHHHHHHHHhccCCCEEEEeCchhcCcCCCHHHHHHHHhhCCCEEEEEeCC
Confidence 99999999999999999999987 999999999999999 89999999999999999999999999 69999999999
Q ss_pred -CHHHHHHHHhhcCCCCEEEEeCCcchhhhhhccCCccccccccccccHHHHHHHHHHHcCCHHHHHHHHHHhhhhHHHH
Q psy11975 610 -DNIKLANMANQTKDLNFSVFAGSAGYLLSGLLVGCAGGINALSAVLGGPICELYDLAKAGKWEEAMKLQHRLVKPDVTV 688 (786)
Q Consensus 610 -Dl~ri~~ll~~~~~~df~Vf~G~DelLL~aL~~GAdG~Isg~aN~~Pel~vaL~eA~~aGD~eeAreLQ~rL~pLi~~l 688 (786)
|+.++.++++ ..+++|.||.|.|.++++++.+|++|+|++++|++|+++++||+++++||+++|+++|.++.++++.+
T Consensus 166 ~d~~~~~~~~~-~~~~~~~v~~G~d~~~~~~l~~Ga~G~is~~~n~~P~~~~~l~~~~~~gd~~~A~~l~~~~~~~~~~~ 244 (294)
T TIGR02313 166 KDFEHLNHLFL-EAGRDFLLFCGIELLCLPMLAIGAAGSIAATANVEPKEVAELCEAAEAGDIKGAQDLHFELLEANDAI 244 (294)
T ss_pred CCHHHHHHHHH-hcCCCeEEEEcchHHHHHHHHCCCCEEEecHHhhCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 9999999876 34679999999999999999999999999999999999999999999999999999999999998765
Q ss_pred HhhhhccccCHHHHHHHHHHcCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCCC
Q psy11975 689 RNVLLMKEMGVPGVRAAMELYGYYGGRSRRPLPAALKPGGAEKIKQVLTEAGFLV 743 (786)
Q Consensus 689 ~~~~~~~~~~ia~lKaaL~lrGI~~G~vR~PL~~pLseeekaeL~~~L~~lGll~ 743 (786)
....++..+|++|+++|++.|.+|+|+. +|+++++++|+++|+++++++
T Consensus 245 -----~~~~~~~~~K~al~~~G~~~g~~R~Pl~-~l~~~~~~~l~~~l~~~~~~~ 293 (294)
T TIGR02313 245 -----FKDTNPAPLKAALGMMGLIEKELRPPLG-LPSDALEEEIRDMAEKYGKIE 293 (294)
T ss_pred -----ccCCCcHHHHHHHHHcCCCCCCcCCCCC-CCCHHHHHHHHHHHHHcCCcc
Confidence 3344566799999999999899999999 999999999999999988654
No 2
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=8.8e-49 Score=417.07 Aligned_cols=248 Identities=31% Similarity=0.460 Sum_probs=231.7
Q ss_pred ceeee---cCCCCCCCHHHHHHHHHhCCCCCccCCCccccccCCCCCCCCCCCCCccccCCCCeEEEeCCCCCHHHHHHH
Q psy11975 456 SHYFK---AHSSTSMPIQKRKSLLRKFPLWPELEPSTSELKRSDRPMSVGPRSVRPSEREWQADLLKPQKHTTTRATIDL 532 (786)
Q Consensus 456 ~Gvf~---agE~~sLT~dER~~Lle~~~~wve~~a~~~e~~~~~~~~~~~~r~v~veevaGRVPVIaGVGa~ST~EAIEL 532 (786)
.|||. +||+.+||.+||+++++. ++ ++++||+|||+|+|+++|+|++++
T Consensus 40 ~gi~~~GttGE~~~Ls~eEr~~v~~~---~v-------------------------~~~~grvpviaG~g~~~t~eai~l 91 (299)
T COG0329 40 DGLVVLGTTGESPTLTLEERKEVLEA---VV-------------------------EAVGGRVPVIAGVGSNSTAEAIEL 91 (299)
T ss_pred CEEEECCCCccchhcCHHHHHHHHHH---HH-------------------------HHHCCCCcEEEecCCCcHHHHHHH
Confidence 57777 899999999999999998 54 467899999999999999999999
Q ss_pred HHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHhcCCCCEEEEeCCCCcCCccCHHHHHHHHhCCCEEEEEeC--C
Q psy11975 533 TQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKDT--D 610 (786)
Q Consensus 533 Ar~Ae~aGADAVmViPPyY~kps~S~eeLv~YFraIAeAtdLPIiLYNiP~~TGv~LSpelL~rLAeiPNVVGIKDS--D 610 (786)
+++|+++||||+|++||||++++ ++++++||++|++++++|+||||+|.+||++++++++.+|+++|||+||||+ |
T Consensus 92 ak~a~~~Gad~il~v~PyY~k~~--~~gl~~hf~~ia~a~~lPvilYN~P~~tg~~l~~e~i~~la~~~nivgiKd~~gd 169 (299)
T COG0329 92 AKHAEKLGADGILVVPPYYNKPS--QEGLYAHFKAIAEAVDLPVILYNIPSRTGVDLSPETIARLAEHPNIVGVKDSSGD 169 (299)
T ss_pred HHHHHhcCCCEEEEeCCCCcCCC--hHHHHHHHHHHHHhcCCCEEEEeCccccCCCCCHHHHHHHhcCCCEEEEEeCCcC
Confidence 99999999999999999999998 9999999999999999999999999999999999999999999999999999 9
Q ss_pred HHHHHHHHhhcCCC-CEEEEeCCcchhhhhhccCCccccccccccccHHHHHHHHHHHcCCHHHHHHHHHHhhhhHHHHH
Q psy11975 611 NIKLANMANQTKDL-NFSVFAGSAGYLLSGLLVGCAGGINALSAVLGGPICELYDLAKAGKWEEAMKLQHRLVKPDVTVR 689 (786)
Q Consensus 611 l~ri~~ll~~~~~~-df~Vf~G~DelLL~aL~~GAdG~Isg~aN~~Pel~vaL~eA~~aGD~eeAreLQ~rL~pLi~~l~ 689 (786)
+.++.+++.. .+. +|.+|+|.|++++.++.+|++|+|++++|++|+++++||+++++||+++|+++|+++.++++.+
T Consensus 170 ~~~~~~~~~~-~~~~~f~v~~G~d~~~~~~~~~G~~G~is~~~N~~p~~~~~l~~~~~~g~~~~A~~l~~~l~~l~~~~- 247 (299)
T COG0329 170 LDRLEEIIAA-LGDRDFIVLSGDDELALPALLLGADGVISVTANVAPELAVELYRAAKAGDIEEARELQDRLLPLIRLL- 247 (299)
T ss_pred HHHHHHHHHh-cCccCeeEEeCchHHHHHHHhCCCCeEEecccccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH-
Confidence 9999998773 444 7999999999999999999999999999999999999999999999999999999999999877
Q ss_pred hhhhccccCHHHHHHHHHHcCCCCCC-CCCCCCCCCCHHHHHH-HHHHHHHcC
Q psy11975 690 NVLLMKEMGVPGVRAAMELYGYYGGR-SRRPLPAALKPGGAEK-IKQVLTEAG 740 (786)
Q Consensus 690 ~~~~~~~~~ia~lKaaL~lrGI~~G~-vR~PL~~pLseeekae-L~~~L~~lG 740 (786)
....++..+|++|+++|++.+. +|+|+. ++++++++. ++++++..+
T Consensus 248 ----~~~~~~~~iK~~l~~~G~~~~~~~R~Pl~-~l~~~~~~~~~~~~~~~~~ 295 (299)
T COG0329 248 ----FREGNPIPIKAALRLLGLIDGGTVRLPLV-PLSEEEREKVLEAALAALG 295 (299)
T ss_pred ----hcCCCcHHHHHHHHHCCCCCCCcCCCCCC-CCCHHHHHHHHHHHHHHhh
Confidence 5666799999999999998765 999999 999998888 777777665
No 3
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=100.00 E-value=4.4e-48 Score=407.22 Aligned_cols=247 Identities=22% Similarity=0.373 Sum_probs=228.8
Q ss_pred ceeee---cCCCCCCCHHHHHHHHHhCCCCCccCCCccccccCCCCCCCCCCCCCccccCCCCeEEEeCCCCCHHHHHHH
Q psy11975 456 SHYFK---AHSSTSMPIQKRKSLLRKFPLWPELEPSTSELKRSDRPMSVGPRSVRPSEREWQADLLKPQKHTTTRATIDL 532 (786)
Q Consensus 456 ~Gvf~---agE~~sLT~dER~~Lle~~~~wve~~a~~~e~~~~~~~~~~~~r~v~veevaGRVPVIaGVGa~ST~EAIEL 532 (786)
.|+|. +||+++||.+||+++++. |++ +++||+|||+||++.++++++++
T Consensus 34 ~Gi~~~GstGE~~~Ls~~Er~~~~~~---~~~-------------------------~~~~~~~vi~gv~~~s~~~~i~~ 85 (285)
T TIGR00674 34 DAIVVVGTTGESPTLSHEEHKKVIEF---VVD-------------------------LVNGRVPVIAGTGSNATEEAISL 85 (285)
T ss_pred CEEEECccCcccccCCHHHHHHHHHH---HHH-------------------------HhCCCCeEEEeCCCccHHHHHHH
Confidence 46665 899999999999999998 554 45689999999999999999999
Q ss_pred HHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHhcCCCCEEEEeCCCCcCCccCHHHHHHHHhCCCEEEEEeC--C
Q psy11975 533 TQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKDT--D 610 (786)
Q Consensus 533 Ar~Ae~aGADAVmViPPyY~kps~S~eeLv~YFraIAeAtdLPIiLYNiP~~TGv~LSpelL~rLAeiPNVVGIKDS--D 610 (786)
|++|+++|||++|++||+|++++ ++++++||++|++++++||++||+|.++|++++++++.+|+++|||+||||+ |
T Consensus 86 a~~a~~~Gad~v~v~pP~y~~~~--~~~i~~~~~~i~~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~~~~v~giK~s~~d 163 (285)
T TIGR00674 86 TKFAEDVGADGFLVVTPYYNKPT--QEGLYQHFKAIAEEVDLPIILYNVPSRTGVSLYPETVKRLAEEPNIVAIKEATGN 163 (285)
T ss_pred HHHHHHcCCCEEEEcCCcCCCCC--HHHHHHHHHHHHhcCCCCEEEEECcHHhcCCCCHHHHHHHHcCCCEEEEEeCCCC
Confidence 99999999999999999999987 9999999999999999999999999999999999999999999999999999 8
Q ss_pred HHHHHHHHhhcCCCCEEEEeCCcchhhhhhccCCccccccccccccHHHHHHHHHHHcCCHHHHHHHHHHhhhhHHHHHh
Q psy11975 611 NIKLANMANQTKDLNFSVFAGSAGYLLSGLLVGCAGGINALSAVLGGPICELYDLAKAGKWEEAMKLQHRLVKPDVTVRN 690 (786)
Q Consensus 611 l~ri~~ll~~~~~~df~Vf~G~DelLL~aL~~GAdG~Isg~aN~~Pel~vaL~eA~~aGD~eeAreLQ~rL~pLi~~l~~ 690 (786)
+.++.++++ ..+++|.||.|.|.++++++.+|++|++++++|++|+++++||+++++||+++|+++|+++.++...+
T Consensus 164 ~~~~~~l~~-~~~~~~~v~~G~d~~~~~~~~~G~~G~i~~~~~~~P~~~~~l~~a~~~gd~~~A~~lq~~l~~l~~~~-- 240 (285)
T TIGR00674 164 LERISEIKA-IAPDDFVVLSGDDALTLPMMALGGKGVISVTANVAPKLMKEMVNNALEGDFAEAREIHQKLMPLHKAL-- 240 (285)
T ss_pred HHHHHHHHH-hcCCCeEEEECchHHHHHHHHcCCCEEEehHHHhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH--
Confidence 999999876 34568999999999999999999999999999999999999999999999999999999999998754
Q ss_pred hhhccccCHHHHHHHHHHcCCCCCCCCCCCCCCCCHHHHHHHHHHHHHc
Q psy11975 691 VLLMKEMGVPGVRAAMELYGYYGGRSRRPLPAALKPGGAEKIKQVLTEA 739 (786)
Q Consensus 691 ~~~~~~~~ia~lKaaL~lrGI~~G~vR~PL~~pLseeekaeL~~~L~~l 739 (786)
....++..+|++|+++|++.|.+|+|+. +++++++++|+++|+.+
T Consensus 241 ---~~~~~~~~~K~~l~~~G~~~g~~R~P~~-~l~~~~~~~l~~~l~~~ 285 (285)
T TIGR00674 241 ---FIETNPIPVKTALALLGLIEGELRLPLT-ELSEEHRNKLRDVLKDL 285 (285)
T ss_pred ---hccCCcHHHHHHHHHcCCCCCCCCCCCC-CCCHHHHHHHHHHHHhC
Confidence 2334456799999999999889999999 99999999999999864
No 4
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=100.00 E-value=3.9e-48 Score=409.35 Aligned_cols=247 Identities=22% Similarity=0.337 Sum_probs=229.4
Q ss_pred ceeee---cCCCCCCCHHHHHHHHHhCCCCCccCCCccccccCCCCCCCCCCCCCccccCCCCeEEEeCCCCCHHHHHHH
Q psy11975 456 SHYFK---AHSSTSMPIQKRKSLLRKFPLWPELEPSTSELKRSDRPMSVGPRSVRPSEREWQADLLKPQKHTTTRATIDL 532 (786)
Q Consensus 456 ~Gvf~---agE~~sLT~dER~~Lle~~~~wve~~a~~~e~~~~~~~~~~~~r~v~veevaGRVPVIaGVGa~ST~EAIEL 532 (786)
.||+. +||+++||.+||++|++. |++ +++||+|||+||++++++|++++
T Consensus 40 ~gi~v~GstGE~~~Ls~eEr~~~~~~---~~~-------------------------~~~~~~~viagvg~~~t~~ai~~ 91 (293)
T PRK04147 40 DGLYVGGSTGEAFLLSTEEKKQVLEI---VAE-------------------------EAKGKVKLIAQVGSVNTAEAQEL 91 (293)
T ss_pred CEEEECCCccccccCCHHHHHHHHHH---HHH-------------------------HhCCCCCEEecCCCCCHHHHHHH
Confidence 46666 899999999999999998 553 46689999999999999999999
Q ss_pred HHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHhcCCCCEEEEeCCCCcCCccCHHHHHHHHhCCCEEEEEeC--C
Q psy11975 533 TQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKDT--D 610 (786)
Q Consensus 533 Ar~Ae~aGADAVmViPPyY~kps~S~eeLv~YFraIAeAtdLPIiLYNiP~~TGv~LSpelL~rLAeiPNVVGIKDS--D 610 (786)
+++|+++|||++|++||+|++++ ++++++||++|++++++||++||+|..+|++++++++.+|+++|||+|||++ |
T Consensus 92 a~~a~~~Gad~v~v~~P~y~~~~--~~~l~~~f~~va~a~~lPv~iYn~P~~tg~~l~~~~l~~L~~~pnvvgiK~s~~d 169 (293)
T PRK04147 92 AKYATELGYDAISAVTPFYYPFS--FEEICDYYREIIDSADNPMIVYNIPALTGVNLSLDQFNELFTLPKVIGVKQTAGD 169 (293)
T ss_pred HHHHHHcCCCEEEEeCCcCCCCC--HHHHHHHHHHHHHhCCCCEEEEeCchhhccCCCHHHHHHHhcCCCEEEEEeCCCC
Confidence 99999999999999999999987 9999999999999999999999999999999999999999999999999999 9
Q ss_pred HHHHHHHHhhcCCCCEEEEeCCcchhhhhhccCCccccccccccccHHHHHHHHHHHcCCHHHHHHHHHHhhhhHHHHHh
Q psy11975 611 NIKLANMANQTKDLNFSVFAGSAGYLLSGLLVGCAGGINALSAVLGGPICELYDLAKAGKWEEAMKLQHRLVKPDVTVRN 690 (786)
Q Consensus 611 l~ri~~ll~~~~~~df~Vf~G~DelLL~aL~~GAdG~Isg~aN~~Pel~vaL~eA~~aGD~eeAreLQ~rL~pLi~~l~~ 690 (786)
+.++.++++. .++|.||+|.|++++.++.+|++|++++++|++|+++++||+++++||+++|+++|+++.+++..+
T Consensus 170 ~~~~~~~~~~--~~~~~v~~G~d~~~~~~l~~G~~G~is~~~n~~p~~~~~l~~~~~~gd~~~a~~l~~~~~~~~~~~-- 245 (293)
T PRK04147 170 LYQLERIRKA--FPDKLIYNGFDEMFASGLLAGADGAIGSTYNVNGWRARQIFEAAKAGDIQEAQELQHECNDVIDLL-- 245 (293)
T ss_pred HHHHHHHHHh--CCCCEEEEeehHHHHHHHHcCCCEEEechhhhCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH--
Confidence 9999888763 358999999999999999999999999999999999999999999999999999999999998766
Q ss_pred hhhccccCHHHHHHHHHHcCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcC
Q psy11975 691 VLLMKEMGVPGVRAAMELYGYYGGRSRRPLPAALKPGGAEKIKQVLTEAG 740 (786)
Q Consensus 691 ~~~~~~~~ia~lKaaL~lrGI~~G~vR~PL~~pLseeekaeL~~~L~~lG 740 (786)
....++..+|++|+++|++.|.+|+|+. +|+++++++|+++|++++
T Consensus 246 ---~~~~~~~~~K~~l~~~G~~~g~~R~Pl~-~l~~~~~~~i~~~l~~~~ 291 (293)
T PRK04147 246 ---IKNGVYPGLKEILHYMGVDAGLCRKPFK-PVDEKYLPALKALAAKYL 291 (293)
T ss_pred ---hhcCCcHHHHHHHHHcCCCCCCcCCCCC-CCCHHHHHHHHHHHHHHh
Confidence 2334577899999999998899999999 999999999999998764
No 5
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=100.00 E-value=2.4e-48 Score=408.90 Aligned_cols=248 Identities=33% Similarity=0.525 Sum_probs=227.6
Q ss_pred ceeee---cCCCCCCCHHHHHHHHHhCCCCCccCCCccccccCCCCCCCCCCCCCccccCCCCeEEEeCCCCCHHHHHHH
Q psy11975 456 SHYFK---AHSSTSMPIQKRKSLLRKFPLWPELEPSTSELKRSDRPMSVGPRSVRPSEREWQADLLKPQKHTTTRATIDL 532 (786)
Q Consensus 456 ~Gvf~---agE~~sLT~dER~~Lle~~~~wve~~a~~~e~~~~~~~~~~~~r~v~veevaGRVPVIaGVGa~ST~EAIEL 532 (786)
.|++- +||+++||.+||++|++. |++ ++++|+|||+||++.++++++++
T Consensus 37 ~gl~~~GstGE~~~Lt~~Er~~l~~~---~~~-------------------------~~~~~~~vi~gv~~~st~~~i~~ 88 (289)
T PF00701_consen 37 DGLVVLGSTGEFYSLTDEERKELLEI---VVE-------------------------AAAGRVPVIAGVGANSTEEAIEL 88 (289)
T ss_dssp SEEEESSTTTTGGGS-HHHHHHHHHH---HHH-------------------------HHTTSSEEEEEEESSSHHHHHHH
T ss_pred CEEEECCCCcccccCCHHHHHHHHHH---HHH-------------------------HccCceEEEecCcchhHHHHHHH
Confidence 45555 789999999999999998 553 56789999999999999999999
Q ss_pred HHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHhcCCCCEEEEeCCCCcCCccCHHHHHHHHhCCCEEEEEeC--C
Q psy11975 533 TQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKDT--D 610 (786)
Q Consensus 533 Ar~Ae~aGADAVmViPPyY~kps~S~eeLv~YFraIAeAtdLPIiLYNiP~~TGv~LSpelL~rLAeiPNVVGIKDS--D 610 (786)
+++|+++|||++|++||+|++++ ++++++||++|++++++||++||+|..+|.+++++++.+|+++|||+|+|++ |
T Consensus 89 a~~a~~~Gad~v~v~~P~~~~~s--~~~l~~y~~~ia~~~~~pi~iYn~P~~tg~~ls~~~l~~L~~~~nv~giK~s~~~ 166 (289)
T PF00701_consen 89 ARHAQDAGADAVLVIPPYYFKPS--QEELIDYFRAIADATDLPIIIYNNPARTGNDLSPETLARLAKIPNVVGIKDSSGD 166 (289)
T ss_dssp HHHHHHTT-SEEEEEESTSSSCC--HHHHHHHHHHHHHHSSSEEEEEEBHHHHSSTSHHHHHHHHHTSTTEEEEEESSSB
T ss_pred HHHHhhcCceEEEEeccccccch--hhHHHHHHHHHHhhcCCCEEEEECCCccccCCCHHHHHHHhcCCcEEEEEcCchh
Confidence 99999999999999999999987 9999999999999999999999999999999999999999999999999999 8
Q ss_pred HHHHHHHHhhcCCCCEEEEeCCcchhhhhhccCCccccccccccccHHHHHHHHHHHcCCHHHHHHHHHHhhhhHHHHHh
Q psy11975 611 NIKLANMANQTKDLNFSVFAGSAGYLLSGLLVGCAGGINALSAVLGGPICELYDLAKAGKWEEAMKLQHRLVKPDVTVRN 690 (786)
Q Consensus 611 l~ri~~ll~~~~~~df~Vf~G~DelLL~aL~~GAdG~Isg~aN~~Pel~vaL~eA~~aGD~eeAreLQ~rL~pLi~~l~~ 690 (786)
+.++.++++ ..+++|.||+|.|.+++.++.+|++|++++++|++|+++++||+++++||+++|+++|++++++++.+
T Consensus 167 ~~~~~~~~~-~~~~~~~v~~G~d~~~~~~l~~G~~G~is~~~n~~P~~~~~i~~~~~~Gd~~~A~~l~~~l~~~~~~~-- 243 (289)
T PF00701_consen 167 LERLIQLLR-AVGPDFSVFCGDDELLLPALAAGADGFISGLANVFPELIVEIYDAFQAGDWEEARELQQRLLPLREAL-- 243 (289)
T ss_dssp HHHHHHHHH-HSSTTSEEEESSGGGHHHHHHTTSSEEEESGGGTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHhh-hcccCeeeeccccccccccccccCCEEEEcccccChHHHHHHHHHHHcCcHHHHHHHHHHHhHHHHHH--
Confidence 989988887 45789999999999999999999999999999999999999999999999999999999999999887
Q ss_pred hhhccccCHHHHHHHHHHcCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcC
Q psy11975 691 VLLMKEMGVPGVRAAMELYGYYGGRSRRPLPAALKPGGAEKIKQVLTEAG 740 (786)
Q Consensus 691 ~~~~~~~~ia~lKaaL~lrGI~~G~vR~PL~~pLseeekaeL~~~L~~lG 740 (786)
....+++++|++|+++|++.|.+|+|+. +++++++++|+++|+++|
T Consensus 244 ---~~~~~~~~~K~~l~~~G~~~g~~R~Pl~-~l~~~~~~~l~~~l~~~g 289 (289)
T PF00701_consen 244 ---FSGGNIAAIKYALELRGLIAGPVRPPLL-PLSDEEKEELKEILKEAG 289 (289)
T ss_dssp ---TSSSTTHHHHHHHHHTTSSSSB--TTS--SS-HHHHHHHHHHHHHTT
T ss_pred ---HccCCHHHHHHHHHHCCCCCCCCCCCCC-CCCHHHHHHHHHHHHhCc
Confidence 4457799999999999999989999999 999999999999999986
No 6
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=100.00 E-value=9.3e-48 Score=405.60 Aligned_cols=246 Identities=21% Similarity=0.339 Sum_probs=228.1
Q ss_pred ceeee---cCCCCCCCHHHHHHHHHhCCCCCccCCCccccccCCCCCCCCCCCCCccccCCCCeEEEeCCCCCHHHHHHH
Q psy11975 456 SHYFK---AHSSTSMPIQKRKSLLRKFPLWPELEPSTSELKRSDRPMSVGPRSVRPSEREWQADLLKPQKHTTTRATIDL 532 (786)
Q Consensus 456 ~Gvf~---agE~~sLT~dER~~Lle~~~~wve~~a~~~e~~~~~~~~~~~~r~v~veevaGRVPVIaGVGa~ST~EAIEL 532 (786)
.|++. +||+++||.+||+++++. +++ +++||+|||+||++.+++|++++
T Consensus 37 ~gi~~~GstGE~~~Lt~~Er~~~~~~---~~~-------------------------~~~~~~~viagv~~~~~~~ai~~ 88 (288)
T cd00954 37 DGLYVNGSTGEGFLLSVEERKQIAEI---VAE-------------------------AAKGKVTLIAHVGSLNLKESQEL 88 (288)
T ss_pred CEEEECcCCcCcccCCHHHHHHHHHH---HHH-------------------------HhCCCCeEEeccCCCCHHHHHHH
Confidence 46655 899999999999999998 543 45689999999999999999999
Q ss_pred HHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHhcC-CCCEEEEeCCCCcCCccCHHHHHHHHhCCCEEEEEeC--
Q psy11975 533 TQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNS-PIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKDT-- 609 (786)
Q Consensus 533 Ar~Ae~aGADAVmViPPyY~kps~S~eeLv~YFraIAeAt-dLPIiLYNiP~~TGv~LSpelL~rLAeiPNVVGIKDS-- 609 (786)
|++|+++|||++|++||+|++++ ++++++||++|++++ ++||++||+|.++|++++++++.+|+++|||+|||++
T Consensus 89 a~~a~~~Gad~v~~~~P~y~~~~--~~~i~~~~~~v~~a~~~lpi~iYn~P~~tg~~l~~~~~~~L~~~pnivgiK~s~~ 166 (288)
T cd00954 89 AKHAEELGYDAISAITPFYYKFS--FEEIKDYYREIIAAAASLPMIIYHIPALTGVNLTLEQFLELFEIPNVIGVKFTAT 166 (288)
T ss_pred HHHHHHcCCCEEEEeCCCCCCCC--HHHHHHHHHHHHHhcCCCCEEEEeCccccCCCCCHHHHHHHhcCCCEEEEEeCCC
Confidence 99999999999999999999976 999999999999999 8999999999999999999999999999999999999
Q ss_pred CHHHHHHHHhhcCCCCEEEEeCCcchhhhhhccCCccccccccccccHHHHHHHHHHHcCCHHHHHHHHHHhhhhHHHHH
Q psy11975 610 DNIKLANMANQTKDLNFSVFAGSAGYLLSGLLVGCAGGINALSAVLGGPICELYDLAKAGKWEEAMKLQHRLVKPDVTVR 689 (786)
Q Consensus 610 Dl~ri~~ll~~~~~~df~Vf~G~DelLL~aL~~GAdG~Isg~aN~~Pel~vaL~eA~~aGD~eeAreLQ~rL~pLi~~l~ 689 (786)
|+.++.++++ ..+++|.||+|.|.+++.++.+|++|++++++|++|+++++||+++++||+++|+++|+++.+++..+
T Consensus 167 d~~~~~~~~~-~~~~~~~v~~G~d~~~~~~~~~G~~G~i~~~~n~~P~~~~~l~~~~~~gd~~~a~~l~~~~~~~~~~~- 244 (288)
T cd00954 167 DLYDLERIRA-ASPEDKLVLNGFDEMLLSALALGADGAIGSTYNVNGKRYRKIFEAFNAGDIDTARELQHVINDVITVL- 244 (288)
T ss_pred CHHHHHHHHH-hCCCCcEEEEechHHHHHHHHcCCCEEEeChhhhCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH-
Confidence 9999988876 34569999999999999999999999999999999999999999999999999999999999998765
Q ss_pred hhhhccccCHHHHHHHHHHcCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q psy11975 690 NVLLMKEMGVPGVRAAMELYGYYGGRSRRPLPAALKPGGAEKIKQVLTE 738 (786)
Q Consensus 690 ~~~~~~~~~ia~lKaaL~lrGI~~G~vR~PL~~pLseeekaeL~~~L~~ 738 (786)
....+++.+|++|+++|++.|.+|+|+. +|+++++++|++++++
T Consensus 245 ----~~~~~~~~~K~~l~~~G~~~g~~R~Pl~-~l~~~~~~~l~~~~~~ 288 (288)
T cd00954 245 ----IKNGLYPTLKAILRLMGLDAGPCRLPLR-KVTEKALAKAKELAAK 288 (288)
T ss_pred ----hccCCcHHHHHHHHHcCCCCCCcCCCCC-CCCHHHHHHHHHHhhC
Confidence 2334578899999999998899999999 9999999999998863
No 7
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=100.00 E-value=2.4e-47 Score=402.22 Aligned_cols=250 Identities=30% Similarity=0.469 Sum_probs=231.9
Q ss_pred ceeee---cCCCCCCCHHHHHHHHHhCCCCCccCCCccccccCCCCCCCCCCCCCccccCCCCeEEEeCCCCCHHHHHHH
Q psy11975 456 SHYFK---AHSSTSMPIQKRKSLLRKFPLWPELEPSTSELKRSDRPMSVGPRSVRPSEREWQADLLKPQKHTTTRATIDL 532 (786)
Q Consensus 456 ~Gvf~---agE~~sLT~dER~~Lle~~~~wve~~a~~~e~~~~~~~~~~~~r~v~veevaGRVPVIaGVGa~ST~EAIEL 532 (786)
+|+|- +||+++||.+||+++++. |++ +++||+|||+||++.++++++++
T Consensus 37 ~gi~~~Gs~GE~~~ls~~Er~~~~~~---~~~-------------------------~~~~~~~vi~gv~~~~~~~~i~~ 88 (292)
T PRK03170 37 DGLVVVGTTGESPTLTHEEHEELIRA---VVE-------------------------AVNGRVPVIAGTGSNSTAEAIEL 88 (292)
T ss_pred CEEEECCcCCccccCCHHHHHHHHHH---HHH-------------------------HhCCCCcEEeecCCchHHHHHHH
Confidence 56665 899999999999999998 654 45689999999999999999999
Q ss_pred HHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHhcCCCCEEEEeCCCCcCCccCHHHHHHHHhCCCEEEEEeC--C
Q psy11975 533 TQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKDT--D 610 (786)
Q Consensus 533 Ar~Ae~aGADAVmViPPyY~kps~S~eeLv~YFraIAeAtdLPIiLYNiP~~TGv~LSpelL~rLAeiPNVVGIKDS--D 610 (786)
|++|+++|||++|++||+|++++ ++++++||++|++++++||++||+|..+|..++++++.+|+++|||+|+|++ |
T Consensus 89 a~~a~~~G~d~v~~~pP~~~~~~--~~~i~~~~~~ia~~~~~pv~lYn~P~~~g~~l~~~~~~~L~~~p~v~giK~s~~d 166 (292)
T PRK03170 89 TKFAEKAGADGALVVTPYYNKPT--QEGLYQHFKAIAEATDLPIILYNVPGRTGVDILPETVARLAEHPNIVGIKEATGD 166 (292)
T ss_pred HHHHHHcCCCEEEECCCcCCCCC--HHHHHHHHHHHHhcCCCCEEEEECccccCCCCCHHHHHHHHcCCCEEEEEECCCC
Confidence 99999999999999999999887 9999999999999999999999999999999999999999999999999999 8
Q ss_pred HHHHHHHHhhcCCCCEEEEeCCcchhhhhhccCCccccccccccccHHHHHHHHHHHcCCHHHHHHHHHHhhhhHHHHHh
Q psy11975 611 NIKLANMANQTKDLNFSVFAGSAGYLLSGLLVGCAGGINALSAVLGGPICELYDLAKAGKWEEAMKLQHRLVKPDVTVRN 690 (786)
Q Consensus 611 l~ri~~ll~~~~~~df~Vf~G~DelLL~aL~~GAdG~Isg~aN~~Pel~vaL~eA~~aGD~eeAreLQ~rL~pLi~~l~~ 690 (786)
+.++.++++ ..+++|.||.|.|+++++.+.+|++|++++++|++|++++++|+++++||+++|+++|+++.++++.+
T Consensus 167 ~~~~~~~~~-~~~~~~~v~~G~d~~~~~~l~~G~~G~is~~~n~~P~~~~~l~~~~~~gd~~~a~~l~~~l~~~~~~~-- 243 (292)
T PRK03170 167 LERVSELIE-LVPDDFAVYSGDDALALPFLALGGVGVISVAANVAPKEMAEMCDAALAGDFAEAREIHRRLLPLHKAL-- 243 (292)
T ss_pred HHHHHHHHH-hCCCCeEEEECChHhHHHHHHcCCCEEEEhHHhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH--
Confidence 999999876 34668999999999999999999999999999999999999999999999999999999999998765
Q ss_pred hhhccccCHHHHHHHHHHcCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCC
Q psy11975 691 VLLMKEMGVPGVRAAMELYGYYGGRSRRPLPAALKPGGAEKIKQVLTEAGFL 742 (786)
Q Consensus 691 ~~~~~~~~ia~lKaaL~lrGI~~G~vR~PL~~pLseeekaeL~~~L~~lGll 742 (786)
....++..+|++|+++|++.|.+|+|+. +|+++++++|+++|++++++
T Consensus 244 ---~~~~~~~~~K~~l~~~G~~~g~~R~P~~-~l~~~~~~~i~~~l~~~~~~ 291 (292)
T PRK03170 244 ---FIEPNPIPVKAALNLLGLIEGELRLPLV-PLSEEEKEKLRAALKEAGLL 291 (292)
T ss_pred ---hccCCcHHHHHHHHHcCCCCCCCCCCCC-CCCHHHHHHHHHHHHHcCCC
Confidence 2344567799999999999888999999 99999999999999998864
No 8
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=100.00 E-value=2.2e-47 Score=404.15 Aligned_cols=246 Identities=20% Similarity=0.317 Sum_probs=227.0
Q ss_pred ceeee---cCCCCCCCHHHHHHHHHhCCCCCccCCCccccccCCCCCCCCCCCCCccccCCCCeEEEeCCCCCHHHHHHH
Q psy11975 456 SHYFK---AHSSTSMPIQKRKSLLRKFPLWPELEPSTSELKRSDRPMSVGPRSVRPSEREWQADLLKPQKHTTTRATIDL 532 (786)
Q Consensus 456 ~Gvf~---agE~~sLT~dER~~Lle~~~~wve~~a~~~e~~~~~~~~~~~~r~v~veevaGRVPVIaGVGa~ST~EAIEL 532 (786)
.|+|. +||+.+||.+||+++++. +++ +++||+|||+||++.++++++++
T Consensus 37 ~gi~~~GstGE~~~Lt~eEr~~~~~~---~~~-------------------------~~~~~~pvi~gv~~~~t~~~i~l 88 (290)
T TIGR00683 37 DGLYVGGSTGENFMLSTEEKKEIFRI---AKD-------------------------EAKDQIALIAQVGSVNLKEAVEL 88 (290)
T ss_pred CEEEECCcccccccCCHHHHHHHHHH---HHH-------------------------HhCCCCcEEEecCCCCHHHHHHH
Confidence 36665 799999999999999998 543 46789999999999999999999
Q ss_pred HHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHhcC-CCCEEEEeCCCCcCCccCHHHHHHHHhCCCEEEEEeC--
Q psy11975 533 TQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNS-PIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKDT-- 609 (786)
Q Consensus 533 Ar~Ae~aGADAVmViPPyY~kps~S~eeLv~YFraIAeAt-dLPIiLYNiP~~TGv~LSpelL~rLAeiPNVVGIKDS-- 609 (786)
+++|+++|||++|++||+|++++ ++++++||++|++++ ++||++||+|.++|++|+++++.+|+++|||+|||++
T Consensus 89 a~~a~~~Gad~v~v~~P~y~~~~--~~~i~~yf~~v~~~~~~lpv~lYn~P~~tg~~l~~~~i~~L~~~pnv~giK~s~~ 166 (290)
T TIGR00683 89 GKYATELGYDCLSAVTPFYYKFS--FPEIKHYYDTIIAETGGLNMIVYSIPFLTGVNMGIEQFGELYKNPKVLGVKFTAG 166 (290)
T ss_pred HHHHHHhCCCEEEEeCCcCCCCC--HHHHHHHHHHHHhhCCCCCEEEEeCccccccCcCHHHHHHHhcCCCEEEEEeCCC
Confidence 99999999999999999999987 999999999999988 7999999999999999999999999999999999999
Q ss_pred CHHHHHHHHhhcCCCCEEEEeCCcchhhhhhccCCccccccccccccHHHHHHHHHHHcCCHHHHHHHHHHhhhhHHHHH
Q psy11975 610 DNIKLANMANQTKDLNFSVFAGSAGYLLSGLLVGCAGGINALSAVLGGPICELYDLAKAGKWEEAMKLQHRLVKPDVTVR 689 (786)
Q Consensus 610 Dl~ri~~ll~~~~~~df~Vf~G~DelLL~aL~~GAdG~Isg~aN~~Pel~vaL~eA~~aGD~eeAreLQ~rL~pLi~~l~ 689 (786)
|+.++.++++. .++|.||+|.|+++++++.+|++|++++++|++|+++++||+++++||+++|+++|+++.+++..+
T Consensus 167 d~~~~~~~~~~--~~~~~v~~G~d~~~~~~l~~G~~G~i~~~~n~~P~~~~~i~~~~~~gd~~~A~~lq~~~~~~~~~~- 243 (290)
T TIGR00683 167 DFYLLERLKKA--YPNHLIWAGFDEMMLPAASLGVDGAIGSTFNVNGVRARQIFELTKAGKLQEALEIQHVTNDLIEGI- 243 (290)
T ss_pred CHHHHHHHHHh--CCCCEEEECchHHHHHHHHCCCCEEEecHHHhCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH-
Confidence 99999988763 358999999999999999999999999999999999999999999999999999999999998866
Q ss_pred hhhhccccCHHHHHHHHHHcCCCCCCCCCCCCCC-CCHHHHHHHHHHHHHc
Q psy11975 690 NVLLMKEMGVPGVRAAMELYGYYGGRSRRPLPAA-LKPGGAEKIKQVLTEA 739 (786)
Q Consensus 690 ~~~~~~~~~ia~lKaaL~lrGI~~G~vR~PL~~p-LseeekaeL~~~L~~l 739 (786)
....++..+|++|+++|++.|.+|+|+. + +++|+++.++++++++
T Consensus 244 ----~~~~~~~~~K~~l~~~G~~~g~~R~Pl~-~~~~~~~~~~~~~~~~~~ 289 (290)
T TIGR00683 244 ----LANGLYLTIKELLKLEGVDAGYCREPMT-SKATPEQKAKAKDLKAKF 289 (290)
T ss_pred ----hhcCCCHHHHHHHHHcCCCCCCcCCCCC-CCCCHHHHHHHHHHHHhc
Confidence 2344566799999999999899999999 7 8999999999998764
No 9
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=100.00 E-value=1.3e-46 Score=393.05 Aligned_cols=244 Identities=32% Similarity=0.468 Sum_probs=227.0
Q ss_pred ceeee---cCCCCCCCHHHHHHHHHhCCCCCccCCCccccccCCCCCCCCCCCCCccccCCCCeEEEeCCCCCHHHHHHH
Q psy11975 456 SHYFK---AHSSTSMPIQKRKSLLRKFPLWPELEPSTSELKRSDRPMSVGPRSVRPSEREWQADLLKPQKHTTTRATIDL 532 (786)
Q Consensus 456 ~Gvf~---agE~~sLT~dER~~Lle~~~~wve~~a~~~e~~~~~~~~~~~~r~v~veevaGRVPVIaGVGa~ST~EAIEL 532 (786)
.|++. +||+++||.+||+++++. |++ ++++|+|||+||++.++++++++
T Consensus 33 ~gi~~~GstGE~~~ls~~Er~~l~~~---~~~-------------------------~~~~~~~vi~gv~~~~~~~~i~~ 84 (281)
T cd00408 33 DGLVVLGTTGEAPTLTDEERKEVIEA---VVE-------------------------AVAGRVPVIAGVGANSTREAIEL 84 (281)
T ss_pred CEEEECCCCcccccCCHHHHHHHHHH---HHH-------------------------HhCCCCeEEEecCCccHHHHHHH
Confidence 45554 899999999999999998 654 35679999999999999999999
Q ss_pred HHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHhcCCCCEEEEeCCCCcCCccCHHHHHHHHhCCCEEEEEeC--C
Q psy11975 533 TQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKDT--D 610 (786)
Q Consensus 533 Ar~Ae~aGADAVmViPPyY~kps~S~eeLv~YFraIAeAtdLPIiLYNiP~~TGv~LSpelL~rLAeiPNVVGIKDS--D 610 (786)
+++|+++|||++|++||+|++++ ++++++||++|++++++||++||+|..+|+.++++++.+|+++|||+|||++ |
T Consensus 85 a~~a~~~Gad~v~v~pP~y~~~~--~~~~~~~~~~ia~~~~~pi~iYn~P~~tg~~l~~~~~~~L~~~~~v~giK~s~~d 162 (281)
T cd00408 85 ARHAEEAGADGVLVVPPYYNKPS--QEGIVAHFKAVADASDLPVILYNIPGRTGVDLSPETIARLAEHPNIVGIKDSSGD 162 (281)
T ss_pred HHHHHHcCCCEEEECCCcCCCCC--HHHHHHHHHHHHhcCCCCEEEEECccccCCCCCHHHHHHHhcCCCEEEEEeCCCC
Confidence 99999999999999999999976 9999999999999999999999999999999999999999999999999999 9
Q ss_pred HHHHHHHHhhcCCCCEEEEeCCcchhhhhhccCCccccccccccccHHHHHHHHHHHcCCHHHHHHHHHHhhhhHHHHHh
Q psy11975 611 NIKLANMANQTKDLNFSVFAGSAGYLLSGLLVGCAGGINALSAVLGGPICELYDLAKAGKWEEAMKLQHRLVKPDVTVRN 690 (786)
Q Consensus 611 l~ri~~ll~~~~~~df~Vf~G~DelLL~aL~~GAdG~Isg~aN~~Pel~vaL~eA~~aGD~eeAreLQ~rL~pLi~~l~~ 690 (786)
+.++.++++ ..+++|.||+|.|.++++.+..|++|++++++|++|++++++|+++++||+++|+++|+++.++++.+
T Consensus 163 ~~~~~~~~~-~~~~~~~v~~G~d~~~~~~l~~G~~G~i~~~~n~~p~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~-- 239 (281)
T cd00408 163 LDRLTRLIA-LLGPDFAVLSGDDDLLLPALALGADGAISGAANVAPKLAVALYEAARAGDLEEARALQDRLLPLIEAL-- 239 (281)
T ss_pred HHHHHHHHH-hcCCCeEEEEcchHHHHHHHHcCCCEEEehHHhhCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH--
Confidence 999999987 34679999999999999999999999999999999999999999999999999999999999998876
Q ss_pred hhhccccCHHHHHHHHHHcCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q psy11975 691 VLLMKEMGVPGVRAAMELYGYYGGRSRRPLPAALKPGGAEKIKQVL 736 (786)
Q Consensus 691 ~~~~~~~~ia~lKaaL~lrGI~~G~vR~PL~~pLseeekaeL~~~L 736 (786)
....++..+|++|+++|+..|.+|+|+. +|+++++++|++++
T Consensus 240 ---~~~~~~~~~K~~l~~~G~~~g~~R~P~~-~l~~~~~~~l~~~~ 281 (281)
T cd00408 240 ---FKEGNPAPVKAALALLGLDAGPVRLPLV-PLSEEERAKLEALL 281 (281)
T ss_pred ---hcCCCcHHHHHHHHHcCCCCCCcCCCCC-CCCHHHHHHHHHhC
Confidence 3344678899999999998899999999 99999999998763
No 10
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=100.00 E-value=5.8e-46 Score=389.60 Aligned_cols=244 Identities=27% Similarity=0.418 Sum_probs=226.1
Q ss_pred ceeee---cCCCCCCCHHHHHHHHHhCCCCCccCCCccccccCCCCCCCCCCCCCccccCCCCeEEEeCCCCCHHHHHHH
Q psy11975 456 SHYFK---AHSSTSMPIQKRKSLLRKFPLWPELEPSTSELKRSDRPMSVGPRSVRPSEREWQADLLKPQKHTTTRATIDL 532 (786)
Q Consensus 456 ~Gvf~---agE~~sLT~dER~~Lle~~~~wve~~a~~~e~~~~~~~~~~~~r~v~veevaGRVPVIaGVGa~ST~EAIEL 532 (786)
.|++- +||+++||.+||+++++. |++ ++++|+|||+||++.++++++++
T Consensus 36 ~gl~v~GstGE~~~lt~~Er~~l~~~---~~~-------------------------~~~~~~~vi~gv~~~~~~~~~~~ 87 (284)
T cd00950 36 DGLVVCGTTGESPTLSDEEHEAVIEA---VVE-------------------------AVNGRVPVIAGTGSNNTAEAIEL 87 (284)
T ss_pred CEEEECCCCcchhhCCHHHHHHHHHH---HHH-------------------------HhCCCCcEEeccCCccHHHHHHH
Confidence 46664 799999999999999998 654 45689999999999999999999
Q ss_pred HHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHhcCCCCEEEEeCCCCcCCccCHHHHHHHHhCCCEEEEEeC--C
Q psy11975 533 TQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKDT--D 610 (786)
Q Consensus 533 Ar~Ae~aGADAVmViPPyY~kps~S~eeLv~YFraIAeAtdLPIiLYNiP~~TGv~LSpelL~rLAeiPNVVGIKDS--D 610 (786)
|++|+++|||+||++||+|++++ ++++++||++|++++++||++||+|.++|+.++++++.+|+++|||+|||++ |
T Consensus 88 a~~a~~~G~d~v~~~~P~~~~~~--~~~l~~~~~~ia~~~~~pi~lYn~P~~~g~~ls~~~~~~L~~~p~v~giK~s~~~ 165 (284)
T cd00950 88 TKRAEKAGADAALVVTPYYNKPS--QEGLYAHFKAIAEATDLPVILYNVPGRTGVNIEPETVLRLAEHPNIVGIKEATGD 165 (284)
T ss_pred HHHHHHcCCCEEEEcccccCCCC--HHHHHHHHHHHHhcCCCCEEEEEChhHhCCCCCHHHHHHHhcCCCEEEEEECCCC
Confidence 99999999999999999999987 9999999999999999999999999999999999999999999999999999 8
Q ss_pred HHHHHHHHhhcCCCCEEEEeCCcchhhhhhccCCccccccccccccHHHHHHHHHHHcCCHHHHHHHHHHhhhhHHHHHh
Q psy11975 611 NIKLANMANQTKDLNFSVFAGSAGYLLSGLLVGCAGGINALSAVLGGPICELYDLAKAGKWEEAMKLQHRLVKPDVTVRN 690 (786)
Q Consensus 611 l~ri~~ll~~~~~~df~Vf~G~DelLL~aL~~GAdG~Isg~aN~~Pel~vaL~eA~~aGD~eeAreLQ~rL~pLi~~l~~ 690 (786)
+.++.++++ ..+++|.||.|.|.++++.+.+|++|++++++|++|++++++|+++++||+++|+++|+++.++++.+
T Consensus 166 ~~~~~~~~~-~~~~~~~v~~G~d~~~~~~~~~G~~G~~s~~~n~~p~~~~~~~~~~~~g~~~~a~~l~~~l~~~~~~~-- 242 (284)
T cd00950 166 LDRVSELIA-LCPDDFAVLSGDDALTLPFLALGGVGVISVAANVAPKLMAEMVRAALAGDLEKARELHRKLLPLIKAL-- 242 (284)
T ss_pred HHHHHHHHH-hCCCCeEEEeCChHhHHHHHHCCCCEEEehHHHhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH--
Confidence 999998876 35679999999999999999999999999999999999999999999999999999999999998766
Q ss_pred hhhccccCHHHHHHHHHHcCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q psy11975 691 VLLMKEMGVPGVRAAMELYGYYGGRSRRPLPAALKPGGAEKIKQVL 736 (786)
Q Consensus 691 ~~~~~~~~ia~lKaaL~lrGI~~G~vR~PL~~pLseeekaeL~~~L 736 (786)
....++..+|++|+++|++.|.+|+|+. +|+++++++|++.|
T Consensus 243 ---~~~~~~~~~K~~l~~~G~~~g~~R~P~~-~l~~~~~~~i~~~~ 284 (284)
T cd00950 243 ---FAEPNPIPVKAALALLGLISGELRLPLV-PLSEELRAKLRAAL 284 (284)
T ss_pred ---hcCCCcHHHHHHHHHcCCCCCCCCCCCC-CCCHHHHHHHHHhC
Confidence 3344567899999999998899999999 99999999999764
No 11
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=100.00 E-value=3.4e-45 Score=387.78 Aligned_cols=246 Identities=20% Similarity=0.283 Sum_probs=222.4
Q ss_pred ceeee---cCCCCCCCHHHHHHHHHhCCCCCccCCCccccccCCCCCCCCCCCCCccccCCCCeEEEeCCCCCHHHHHHH
Q psy11975 456 SHYFK---AHSSTSMPIQKRKSLLRKFPLWPELEPSTSELKRSDRPMSVGPRSVRPSEREWQADLLKPQKHTTTRATIDL 532 (786)
Q Consensus 456 ~Gvf~---agE~~sLT~dER~~Lle~~~~wve~~a~~~e~~~~~~~~~~~~r~v~veevaGRVPVIaGVGa~ST~EAIEL 532 (786)
.|+|. +||+++||.+||++|++. +++ +++||+|||+||++ ++++++++
T Consensus 41 ~gi~v~GstGE~~~Lt~eEr~~v~~~---~~~-------------------------~~~g~~pvi~gv~~-~t~~ai~~ 91 (296)
T TIGR03249 41 EALFAAGGTGEFFSLTPAEYEQVVEI---AVS-------------------------TAKGKVPVYTGVGG-NTSDAIEI 91 (296)
T ss_pred CEEEECCCCcCcccCCHHHHHHHHHH---HHH-------------------------HhCCCCcEEEecCc-cHHHHHHH
Confidence 46665 899999999999999998 543 46789999999996 79999999
Q ss_pred HHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHhcCCCCEEEEeCCCCcCCccCHHHHHHHHh-CCCEEEEEeC--
Q psy11975 533 TQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAH-HENIRGVKDT-- 609 (786)
Q Consensus 533 Ar~Ae~aGADAVmViPPyY~kps~S~eeLv~YFraIAeAtdLPIiLYNiP~~TGv~LSpelL~rLAe-iPNVVGIKDS-- 609 (786)
+++|+++|||++|++||||++++ ++++++||++|++++++||++|| ++|++++++++.+|++ +|||+||||+
T Consensus 92 a~~a~~~Gadav~~~pP~y~~~s--~~~i~~~f~~v~~a~~~pvilYn---~~g~~l~~~~~~~La~~~~nvvgiKds~~ 166 (296)
T TIGR03249 92 ARLAEKAGADGYLLLPPYLINGE--QEGLYAHVEAVCESTDLGVIVYQ---RDNAVLNADTLERLADRCPNLVGFKDGIG 166 (296)
T ss_pred HHHHHHhCCCEEEECCCCCCCCC--HHHHHHHHHHHHhccCCCEEEEe---CCCCCCCHHHHHHHHhhCCCEEEEEeCCC
Confidence 99999999999999999999987 99999999999999999999999 5789999999999996 9999999999
Q ss_pred CHHHHHHHHhhcCCCCEEEEeCC---cchhhhhhccCCccccccccccccHHHHHHHHHHHcCCHHHHHHHHH-HhhhhH
Q psy11975 610 DNIKLANMANQTKDLNFSVFAGS---AGYLLSGLLVGCAGGINALSAVLGGPICELYDLAKAGKWEEAMKLQH-RLVKPD 685 (786)
Q Consensus 610 Dl~ri~~ll~~~~~~df~Vf~G~---DelLL~aL~~GAdG~Isg~aN~~Pel~vaL~eA~~aGD~eeAreLQ~-rL~pLi 685 (786)
|+.++.++++ ..+++|.||+|. |.++++.+.+|++|+|++++|++|+++++||+++++||+++|+++|+ ++.+++
T Consensus 167 d~~~~~~~~~-~~~~~~~v~~G~~~~d~~~~~~~~~Ga~G~is~~~n~~P~~~~~~~~~~~~gd~~~a~~l~~~~~~~l~ 245 (296)
T TIGR03249 167 DMEQMIEITQ-RLGDRLGYLGGMPTAEVTAPAYLPLGVTSYSSAIFNFIPHIARAFYEALRRGDHATVGEIYKEFILPIN 245 (296)
T ss_pred CHHHHHHHHH-HcCCCeEEEeCCCcchhhHHHHHhCCCCEEEecHHHhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 9999999876 356799999996 66788999999999999999999999999999999999999999987 589988
Q ss_pred HHHHhhhhccccCHHHHHHHHHHcCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcC
Q psy11975 686 VTVRNVLLMKEMGVPGVRAAMELYGYYGGRSRRPLPAALKPGGAEKIKQVLTEAG 740 (786)
Q Consensus 686 ~~l~~~~~~~~~~ia~lKaaL~lrGI~~G~vR~PL~~pLseeekaeL~~~L~~lG 740 (786)
+.+. ......+.++|++|+++|++.|.+|+|+. +|+++++++|+++|+++|
T Consensus 246 ~~~~---~~~~~~~~~~K~al~~~G~~~g~~R~Pl~-~l~~~~~~~i~~~l~~~~ 296 (296)
T TIGR03249 246 EIRN---RKKGYAVSIIKAGMEIVGLPAGPVRPPLT-DLTKEEYAQLEVILKKAG 296 (296)
T ss_pred HHHh---ccccCCcHHHHHHHHHcCCCCCCCCCCCC-CCCHHHHHHHHHHHHhcC
Confidence 7551 01123478899999999999899999999 999999999999998875
No 12
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=100.00 E-value=4.3e-45 Score=389.95 Aligned_cols=251 Identities=15% Similarity=0.160 Sum_probs=221.5
Q ss_pred ceeee---cCCCCCCCHHHHHHHHHhCCCCCccCCCccccccCCCCCCCCCCCCCccccCCCCeEEEeCCCCCHHHHHHH
Q psy11975 456 SHYFK---AHSSTSMPIQKRKSLLRKFPLWPELEPSTSELKRSDRPMSVGPRSVRPSEREWQADLLKPQKHTTTRATIDL 532 (786)
Q Consensus 456 ~Gvf~---agE~~sLT~dER~~Lle~~~~wve~~a~~~e~~~~~~~~~~~~r~v~veevaGRVPVIaGVGa~ST~EAIEL 532 (786)
.|+|. +||+.+||.+||++++++ +++ .++||+|||+||+++++++++++
T Consensus 44 ~Gi~v~GstGE~~~Lt~eEr~~v~~~---~~~-------------------------~~~grvpvi~Gv~~~~t~~ai~~ 95 (309)
T cd00952 44 DGILTMGTFGECATLTWEEKQAFVAT---VVE-------------------------TVAGRVPVFVGATTLNTRDTIAR 95 (309)
T ss_pred CEEEECcccccchhCCHHHHHHHHHH---HHH-------------------------HhCCCCCEEEEeccCCHHHHHHH
Confidence 47766 899999999999999998 543 46789999999999999999999
Q ss_pred HHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHhcC-CCCEEEEeCCCCcCCccCHHHHHHHHhCCCEEEEEeC-C
Q psy11975 533 TQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNS-PIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKDT-D 610 (786)
Q Consensus 533 Ar~Ae~aGADAVmViPPyY~kps~S~eeLv~YFraIAeAt-dLPIiLYNiP~~TGv~LSpelL~rLAeiPNVVGIKDS-D 610 (786)
|++|+++|||++|++||||++++ ++++++||++|++++ ++|||+||+|..+|++++++++.+|+++|||+||||+ |
T Consensus 96 a~~A~~~Gad~vlv~~P~y~~~~--~~~l~~yf~~va~a~~~lPv~iYn~P~~tg~~l~~~~l~~L~~~pnivgiKdssd 173 (309)
T cd00952 96 TRALLDLGADGTMLGRPMWLPLD--VDTAVQFYRDVAEAVPEMAIAIYANPEAFKFDFPRAAWAELAQIPQVVAAKYLGD 173 (309)
T ss_pred HHHHHHhCCCEEEECCCcCCCCC--HHHHHHHHHHHHHhCCCCcEEEEcCchhcCCCCCHHHHHHHhcCCCEEEEEecCC
Confidence 99999999999999999999987 999999999999999 6999999999999999999999999999999999999 9
Q ss_pred HHHHHHHHhhcCCCCEEEEeCCcchhhhhhccCC---ccccccccccccHHHHHHHHHHHcCCHHHHHHHHHHhhhhHHH
Q psy11975 611 NIKLANMANQTKDLNFSVFAGSAGYLLSGLLVGC---AGGINALSAVLGGPICELYDLAKAGKWEEAMKLQHRLVKPDVT 687 (786)
Q Consensus 611 l~ri~~ll~~~~~~df~Vf~G~DelLL~aL~~GA---dG~Isg~aN~~Pel~vaL~eA~~aGD~eeAreLQ~rL~pLi~~ 687 (786)
+.++.++++ ..+++|.||.|.|.++ ..+..|+ +|++++++|++|+++++||+++++||+++|+++|+++.+++..
T Consensus 174 ~~~~~~~i~-~~~~~~~v~~g~d~~l-~~~~~~~~~~~G~is~~~n~~P~~~~~l~~a~~~Gd~~~A~~lq~~~~~~~~~ 251 (309)
T cd00952 174 IGALLSDLA-AVKGRMRLLPLEDDYY-AAARLFPEEVTAFWSSGAACGPAPVTALRDAVATGDWTDARALTDRMRWAAEP 251 (309)
T ss_pred hHHHHHHHH-HcCCCeEEeecchhHH-HHHHhcCccCccEEEeccccCcHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 999988776 3467999999999964 4444443 6999999999999999999999999999999999999999876
Q ss_pred HHhhhh---ccccCHHHHHHHHHHcCC-CCCCCCCCCCCCCCHHHHHHHHHHHHHc
Q psy11975 688 VRNVLL---MKEMGVPGVRAAMELYGY-YGGRSRRPLPAALKPGGAEKIKQVLTEA 739 (786)
Q Consensus 688 l~~~~~---~~~~~ia~lKaaL~lrGI-~~G~vR~PL~~pLseeekaeL~~~L~~l 739 (786)
++.... ....++..+|++|+++|+ +.|.+|+|+. +++++.++++++--+++
T Consensus 252 ~~~~~~~~~~~~~~~~~~K~al~~~G~~~~g~~R~Pl~-~~~~~~~~~~~~~~~~~ 306 (309)
T cd00952 252 LFPRGDFSEFSKYNIALEKARFDAAGYMRAGPARPPYN-TAPEAYLEGARESGRRW 306 (309)
T ss_pred HhccCccccccccchHHHHHHHHhcCCCCCCCCCCCCC-CCCHHHHHHHHHHhhhh
Confidence 521100 011246678999999997 6888999999 99999999999876654
No 13
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=100.00 E-value=2.8e-44 Score=379.85 Aligned_cols=243 Identities=23% Similarity=0.287 Sum_probs=218.5
Q ss_pred ceeee---cCCCCCCCHHHHHHHHHhCCCCCccCCCccccccCCCCCCCCCCCCCccccCCCCeEEEeCCCCCHHHHHHH
Q psy11975 456 SHYFK---AHSSTSMPIQKRKSLLRKFPLWPELEPSTSELKRSDRPMSVGPRSVRPSEREWQADLLKPQKHTTTRATIDL 532 (786)
Q Consensus 456 ~Gvf~---agE~~sLT~dER~~Lle~~~~wve~~a~~~e~~~~~~~~~~~~r~v~veevaGRVPVIaGVGa~ST~EAIEL 532 (786)
.|+|. +||++.||.+||+++++. +++ +++||+|||+|+++ ++++++++
T Consensus 36 ~gi~v~GstGE~~~Ls~eEr~~l~~~---~~~-------------------------~~~~~~pvi~gv~~-~t~~~i~~ 86 (289)
T cd00951 36 AALFAAGGTGEFFSLTPDEYAQVVRA---AVE-------------------------ETAGRVPVLAGAGY-GTATAIAY 86 (289)
T ss_pred CEEEECcCCcCcccCCHHHHHHHHHH---HHH-------------------------HhCCCCCEEEecCC-CHHHHHHH
Confidence 46665 899999999999999998 543 45689999999997 99999999
Q ss_pred HHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHhcCCCCEEEEeCCCCcCCccCHHHHHHHHh-CCCEEEEEeC--
Q psy11975 533 TQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAH-HENIRGVKDT-- 609 (786)
Q Consensus 533 Ar~Ae~aGADAVmViPPyY~kps~S~eeLv~YFraIAeAtdLPIiLYNiP~~TGv~LSpelL~rLAe-iPNVVGIKDS-- 609 (786)
+++|+++|||++|++||+|++++ ++++++||++|++++++||++||. +|++++++++.+|++ +|||+||||+
T Consensus 87 a~~a~~~Gad~v~~~pP~y~~~~--~~~i~~~f~~v~~~~~~pi~lYn~---~g~~l~~~~l~~L~~~~pnivgiKds~~ 161 (289)
T cd00951 87 AQAAEKAGADGILLLPPYLTEAP--QEGLYAHVEAVCKSTDLGVIVYNR---ANAVLTADSLARLAERCPNLVGFKDGVG 161 (289)
T ss_pred HHHHHHhCCCEEEECCCCCCCCC--HHHHHHHHHHHHhcCCCCEEEEeC---CCCCCCHHHHHHHHhcCCCEEEEEeCCC
Confidence 99999999999999999999886 999999999999999999999995 578999999999998 9999999999
Q ss_pred CHHHHHHHHhhcCCCCEEEEeCC---cchhhhhhccCCccccccccccccHHHHHHHHHHHcCCHHHHHHH-HHHhhhhH
Q psy11975 610 DNIKLANMANQTKDLNFSVFAGS---AGYLLSGLLVGCAGGINALSAVLGGPICELYDLAKAGKWEEAMKL-QHRLVKPD 685 (786)
Q Consensus 610 Dl~ri~~ll~~~~~~df~Vf~G~---DelLL~aL~~GAdG~Isg~aN~~Pel~vaL~eA~~aGD~eeAreL-Q~rL~pLi 685 (786)
|+.++.++++ ..+++|.||+|. |.++++++.+|++|+|++++|++|+++++||+++++||+++|+++ |+++.+++
T Consensus 162 d~~~~~~~~~-~~~~~~~v~~G~~~~d~~~~~~l~~Ga~G~is~~~n~~P~~~~~l~~~~~~gd~~~a~~~~~~~~~~~~ 240 (289)
T cd00951 162 DIELMRRIVA-KLGDRLLYLGGLPTAEVFALAYLAMGVPTYSSAVFNFVPEIALAFYAAVRAGDHATVKRLLRDFFLPYV 240 (289)
T ss_pred CHHHHHHHHH-hcCCCeEEEeCCCcchHhHHHHHHCCCCEEEechhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 9999999876 346789999997 677889999999999999999999999999999999999999997 56688888
Q ss_pred HHHHhhhhccccCHHHHHHHHHHcCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q psy11975 686 VTVRNVLLMKEMGVPGVRAAMELYGYYGGRSRRPLPAALKPGGAEKIKQVLT 737 (786)
Q Consensus 686 ~~l~~~~~~~~~~ia~lKaaL~lrGI~~G~vR~PL~~pLseeekaeL~~~L~ 737 (786)
+.+. .....++.++|++|+++|++.|.+|+|+. +|+++++++|+++|+
T Consensus 241 ~~~~---~~~~~~~~~~K~al~~~G~~~g~~R~Pl~-~l~~~~~~~i~~~l~ 288 (289)
T cd00951 241 DIRN---RRKGYAVSIVKAGARLVGRDAGPVRPPLT-DLTEEELAQLTALIK 288 (289)
T ss_pred HHHh---ccccCCcHHHHHHHHHcCCCCCCCCCCCC-CCCHHHHHHHHHHHh
Confidence 7540 01223478899999999998899999999 999999999999885
No 14
>PLN02417 dihydrodipicolinate synthase
Probab=100.00 E-value=1.6e-44 Score=380.38 Aligned_cols=237 Identities=21% Similarity=0.266 Sum_probs=215.8
Q ss_pred ceeee---cCCCCCCCHHHHHHHHHhCCCCCccCCCccccccCCCCCCCCCCCCCccccCCCCeEEEeCCCCCHHHHHHH
Q psy11975 456 SHYFK---AHSSTSMPIQKRKSLLRKFPLWPELEPSTSELKRSDRPMSVGPRSVRPSEREWQADLLKPQKHTTTRATIDL 532 (786)
Q Consensus 456 ~Gvf~---agE~~sLT~dER~~Lle~~~~wve~~a~~~e~~~~~~~~~~~~r~v~veevaGRVPVIaGVGa~ST~EAIEL 532 (786)
.|||. +||+.+||.+||+++++. +++ .++||+|||+||+++++++++++
T Consensus 37 ~Gi~~~GstGE~~~ls~~Er~~~~~~---~~~-------------------------~~~~~~pvi~gv~~~~t~~~i~~ 88 (280)
T PLN02417 37 EGLIVGGTTGEGQLMSWDEHIMLIGH---TVN-------------------------CFGGKIKVIGNTGSNSTREAIHA 88 (280)
T ss_pred CEEEECccCcchhhCCHHHHHHHHHH---HHH-------------------------HhCCCCcEEEECCCccHHHHHHH
Confidence 46666 899999999999999998 543 45689999999999999999999
Q ss_pred HHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHhcCCCCEEEEeCCCCcCCccCHHHHHHHHhCCCEEEEEeC--C
Q psy11975 533 TQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKDT--D 610 (786)
Q Consensus 533 Ar~Ae~aGADAVmViPPyY~kps~S~eeLv~YFraIAeAtdLPIiLYNiP~~TGv~LSpelL~rLAeiPNVVGIKDS--D 610 (786)
+++|+++|||++|++||+|++++ ++++++||++|++++ ||++||+|..+|++++++++.+|+++|||+||||+ |
T Consensus 89 a~~a~~~Gadav~~~~P~y~~~~--~~~i~~~f~~va~~~--pi~lYn~P~~tg~~l~~~~l~~l~~~pni~giKdss~~ 164 (280)
T PLN02417 89 TEQGFAVGMHAALHINPYYGKTS--QEGLIKHFETVLDMG--PTIIYNVPGRTGQDIPPEVIFKIAQHPNFAGVKECTGN 164 (280)
T ss_pred HHHHHHcCCCEEEEcCCccCCCC--HHHHHHHHHHHHhhC--CEEEEEChhHhCcCCCHHHHHHHhcCCCEEEEEeCCCc
Confidence 99999999999999999999987 999999999999976 99999999999999999999999999999999999 8
Q ss_pred HHHHHHHHhhcCCCCEEEEeCCcchhhhh-hccCCccccccccccccHHHHHHHHHHHcCCHHHHHHHHHHhhhhHHHHH
Q psy11975 611 NIKLANMANQTKDLNFSVFAGSAGYLLSG-LLVGCAGGINALSAVLGGPICELYDLAKAGKWEEAMKLQHRLVKPDVTVR 689 (786)
Q Consensus 611 l~ri~~ll~~~~~~df~Vf~G~DelLL~a-L~~GAdG~Isg~aN~~Pel~vaL~eA~~aGD~eeAreLQ~rL~pLi~~l~ 689 (786)
.++.+++ +.+|.||+|.|.+++++ +.+|++|+|++++|++|+++++||+++++ +++|+++.++++.+
T Consensus 165 -~~~~~~~----~~~~~v~~G~d~~~~~~~l~~Ga~G~is~~~n~~P~~~~~l~~a~~~------~~l~~~l~~l~~~~- 232 (280)
T PLN02417 165 -DRVKQYT----EKGILLWSGNDDECHDARWDYGADGVISVTSNLVPGLMHKLMFAGKN------KELNDKLLPLMDWL- 232 (280)
T ss_pred -HHHHHHh----cCCeEEEEcccHHhhHHHHhCCCCEEEecHHHhhHHHHHHHHHHHHH------HHHHHHHHHHHHHH-
Confidence 7777643 35899999999999998 89999999999999999999999999843 78999999998865
Q ss_pred hhhhccccCHHHHHHHHHHcCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCC
Q psy11975 690 NVLLMKEMGVPGVRAAMELYGYYGGRSRRPLPAALKPGGAEKIKQVLTEAGF 741 (786)
Q Consensus 690 ~~~~~~~~~ia~lKaaL~lrGI~~G~vR~PL~~pLseeekaeL~~~L~~lGl 741 (786)
....++.++|++|+++|++.|.+|+|+. +|+++++++|+++|+++++
T Consensus 233 ----~~~~~~~~~K~al~~~G~~~g~~R~Pl~-~l~~~~~~~l~~~l~~~~~ 279 (280)
T PLN02417 233 ----FCEPNPIGLNTALAQLGLIRPVFRLPYV-PLDLAKRAEFVALVKAIGR 279 (280)
T ss_pred ----hccCCcHHHHHHHHHcCCCCCCCCCCCC-CCCHHHHHHHHHHHHHcCC
Confidence 2334556799999999999888999999 9999999999999999764
No 15
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=100.00 E-value=4.1e-44 Score=381.06 Aligned_cols=246 Identities=21% Similarity=0.279 Sum_probs=220.7
Q ss_pred ceeee---cCCCCCCCHHHHHHHHHhCCCCCccCCCccccccCCCCCCCCCCCCCccccCCCCeEEEeCCCCCHHHHHHH
Q psy11975 456 SHYFK---AHSSTSMPIQKRKSLLRKFPLWPELEPSTSELKRSDRPMSVGPRSVRPSEREWQADLLKPQKHTTTRATIDL 532 (786)
Q Consensus 456 ~Gvf~---agE~~sLT~dER~~Lle~~~~wve~~a~~~e~~~~~~~~~~~~r~v~veevaGRVPVIaGVGa~ST~EAIEL 532 (786)
.|+|. +||+..||.+||+++++. ++ ++++||+|||+||++ ++++++++
T Consensus 43 ~Gi~~~GstGE~~~Lt~eEr~~~~~~---~~-------------------------~~~~~~~pvi~gv~~-~t~~~i~~ 93 (303)
T PRK03620 43 AALFAAGGTGEFFSLTPDEYSQVVRA---AV-------------------------ETTAGRVPVIAGAGG-GTAQAIEY 93 (303)
T ss_pred CEEEECcCCcCcccCCHHHHHHHHHH---HH-------------------------HHhCCCCcEEEecCC-CHHHHHHH
Confidence 46666 899999999999999998 44 356789999999997 99999999
Q ss_pred HHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHhcCCCCEEEEeCCCCcCCccCHHHHHHHH-hCCCEEEEEeC--
Q psy11975 533 TQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLA-HHENIRGVKDT-- 609 (786)
Q Consensus 533 Ar~Ae~aGADAVmViPPyY~kps~S~eeLv~YFraIAeAtdLPIiLYNiP~~TGv~LSpelL~rLA-eiPNVVGIKDS-- 609 (786)
+++|+++|||++|++||+|++++ ++++++||++|++++++||++||.| |++++++++.+|+ ++|||+|||++
T Consensus 94 ~~~a~~~Gadav~~~pP~y~~~~--~~~i~~~f~~va~~~~lpi~lYn~~---g~~l~~~~l~~L~~~~pni~giK~s~~ 168 (303)
T PRK03620 94 AQAAERAGADGILLLPPYLTEAP--QEGLAAHVEAVCKSTDLGVIVYNRD---NAVLTADTLARLAERCPNLVGFKDGVG 168 (303)
T ss_pred HHHHHHhCCCEEEECCCCCCCCC--HHHHHHHHHHHHHhCCCCEEEEcCC---CCCCCHHHHHHHHhhCCCEEEEEeCCC
Confidence 99999999999999999999886 9999999999999999999999965 6899999999999 89999999999
Q ss_pred CHHHHHHHHhhcCCCCEEEEeCCc---chhhhhhccCCccccccccccccHHHHHHHHHHHcCCHHHHHHHHH-HhhhhH
Q psy11975 610 DNIKLANMANQTKDLNFSVFAGSA---GYLLSGLLVGCAGGINALSAVLGGPICELYDLAKAGKWEEAMKLQH-RLVKPD 685 (786)
Q Consensus 610 Dl~ri~~ll~~~~~~df~Vf~G~D---elLL~aL~~GAdG~Isg~aN~~Pel~vaL~eA~~aGD~eeAreLQ~-rL~pLi 685 (786)
|+.++.++++ ..+++|.||+|.| .+++.++.+|++|++++++|++|+++++||+++++||+++|+++|+ .+.+++
T Consensus 169 d~~~~~~~~~-~~~~~f~vl~G~d~~e~~~~~~~~~G~~G~is~~an~~P~~~~~l~~~~~~gd~~~A~~l~~~~~~~l~ 247 (303)
T PRK03620 169 DIELMQRIVR-ALGDRLLYLGGLPTAEVFAAAYLALGVPTYSSAVFNFVPEIALAFYRALRAGDHATVDRLLDDFFLPYV 247 (303)
T ss_pred CHHHHHHHHH-HcCCCeEEEeCCCcchhhHHHHHhCCCCEEEecHHhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 9999999987 3567999999984 5577888999999999999999999999999999999999999965 578888
Q ss_pred HHHHhhhhccccCHHHHHHHHHHcCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcC
Q psy11975 686 VTVRNVLLMKEMGVPGVRAAMELYGYYGGRSRRPLPAALKPGGAEKIKQVLTEAG 740 (786)
Q Consensus 686 ~~l~~~~~~~~~~ia~lKaaL~lrGI~~G~vR~PL~~pLseeekaeL~~~L~~lG 740 (786)
+.+. ......+.++|++|+++|++.|.+|+|+. +++++++++|+++|++++
T Consensus 248 ~~~~---~~~~~~~~~~K~al~~~G~~~g~~R~Pl~-~l~~~~~~~i~~~l~~~~ 298 (303)
T PRK03620 248 ALRN---RKKGYAVSIVKAGARLVGLDAGPVRAPLT-DLTPEELAELAALIAKGG 298 (303)
T ss_pred HHHh---ccccCCcHHHHHHHHHcCCCCCCCCCCCC-CCCHHHHHHHHHHHHHhh
Confidence 7541 01223478899999999999899999999 999999999999999865
No 16
>cd00953 KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolases found in archaea. This subfamily of enzymes is adapted for high thermostability and shows specificity for non-phosphorylated substrates. The enzyme catalyses the reversible aldol cleavage of 2-keto-3-dexoygluconate to pyruvate and glyceraldehyde, the third step of a modified non-phosphorylated Entner-Doudoroff pathway of glucose oxidation. KDG aldolase shows no significant sequence similarity to microbial 2-keto-3-deoxyphosphogluconate (KDPG) aldolases, and the enzyme shows no activity with glyceraldehyde 3-phosphate as substrate. The enzyme is a tetramer and a member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=100.00 E-value=2.2e-43 Score=371.58 Aligned_cols=237 Identities=24% Similarity=0.351 Sum_probs=214.2
Q ss_pred ceeee---cCCCCCCCHHHHHHHHHhCCCCCccCCCccccccCCCCCCCCCCCCCccccCCCCeEEEeCCCCCHHHHHHH
Q psy11975 456 SHYFK---AHSSTSMPIQKRKSLLRKFPLWPELEPSTSELKRSDRPMSVGPRSVRPSEREWQADLLKPQKHTTTRATIDL 532 (786)
Q Consensus 456 ~Gvf~---agE~~sLT~dER~~Lle~~~~wve~~a~~~e~~~~~~~~~~~~r~v~veevaGRVPVIaGVGa~ST~EAIEL 532 (786)
.|||. +||+.+||.+||++|++. |++. + ++ ||+||++.++++++++
T Consensus 35 ~Gl~~~GstGE~~~Lt~eEr~~l~~~---~~~~-------------------------~-~~--vi~gvg~~~~~~ai~~ 83 (279)
T cd00953 35 DYVFVAGTTGLGPSLSFQEKLELLKA---YSDI-------------------------T-DK--VIFQVGSLNLEESIEL 83 (279)
T ss_pred cEEEEcccCCCcccCCHHHHHHHHHH---HHHH-------------------------c-CC--EEEEeCcCCHHHHHHH
Confidence 56666 899999999999999998 6542 2 23 8999999999999999
Q ss_pred HHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHhcCCCCEEEEeCCCCcCCccCHHHHHHHHh-CCCEEEEEeC--
Q psy11975 533 TQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAH-HENIRGVKDT-- 609 (786)
Q Consensus 533 Ar~Ae~aGADAVmViPPyY~kps~S~eeLv~YFraIAeAtdLPIiLYNiP~~TGv~LSpelL~rLAe-iPNVVGIKDS-- 609 (786)
|++|+++|||++|++||||+++. +++++++||++|++ ++||++||+|.++|++|+++++.+|++ +|||+||||+
T Consensus 84 a~~a~~~Gad~v~v~~P~y~~~~-~~~~i~~yf~~v~~--~lpv~iYn~P~~tg~~l~~~~l~~L~~~~p~vvgiK~s~~ 160 (279)
T cd00953 84 ARAAKSFGIYAIASLPPYYFPGI-PEEWLIKYFTDISS--PYPTFIYNYPKATGYDINARMAKEIKKAGGDIIGVKDTNE 160 (279)
T ss_pred HHHHHHcCCCEEEEeCCcCCCCC-CHHHHHHHHHHHHh--cCCEEEEeCccccCCCCCHHHHHHHHhcCCCEEEEEeCcc
Confidence 99999999999999999999842 49999999999999 999999999999999999999999995 7999999999
Q ss_pred CHHHHHHHHhhcCCCCEEEEeCCcchhhhhhccCCccccccccccccHHHHHHHHHHHcCCHHHHHHHHHHhhhhHHHHH
Q psy11975 610 DNIKLANMANQTKDLNFSVFAGSAGYLLSGLLVGCAGGINALSAVLGGPICELYDLAKAGKWEEAMKLQHRLVKPDVTVR 689 (786)
Q Consensus 610 Dl~ri~~ll~~~~~~df~Vf~G~DelLL~aL~~GAdG~Isg~aN~~Pel~vaL~eA~~aGD~eeAreLQ~rL~pLi~~l~ 689 (786)
|+.++.++++ . .++|.||+|.|+++++++.+|++|+|++++|++|+++++||++++ +++|+++|+++.++++.+
T Consensus 161 d~~~~~~~~~-~-~~~~~v~~G~d~~~~~~l~~Ga~G~i~~~~n~~P~~~~~l~~a~~---~~~a~~~q~~~~~l~~~~- 234 (279)
T cd00953 161 DISHMLEYKR-L-VPDFKVYSGPDSLIFSALRSGLDGSVAAASNYLPEVFVKIKDHVA---IEDAFKLQFLINEVLDAS- 234 (279)
T ss_pred CHHHHHHHHH-h-CCCeEEEEccHHHHHHHHHcCCCeEEechhhccHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH-
Confidence 9999998866 2 348999999999999999999999999999999999999999997 899999999999998765
Q ss_pred hhhhccccCHHHHHHHHH-HcCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q psy11975 690 NVLLMKEMGVPGVRAAME-LYGYYGGRSRRPLPAALKPGGAEKIKQVLT 737 (786)
Q Consensus 690 ~~~~~~~~~ia~lKaaL~-lrGI~~G~vR~PL~~pLseeekaeL~~~L~ 737 (786)
....+...+|++++ ++|++.|.+|+|+. +|+++++++|+++|+
T Consensus 235 ----~~~~~~~~~k~~~~~~~G~~~g~~R~Pl~-~l~~~~~~~l~~~l~ 278 (279)
T cd00953 235 ----RKYGSWSANYSLVKIFQGYDAGEPRPPFY-PLDEEEEEKLRKEVN 278 (279)
T ss_pred ----HhcCCcHHHHHHHHHhcCCCCCCCCCCCC-CCCHHHHHHHHHHhh
Confidence 22334566899998 69998899999999 999999999999886
No 17
>cd05835 Dnmt3b_related The PWWP domain is an essential component of DNA methyltransferase 3 B (Dnmt3b) which is responsible for establishing DNA methylation patterns during embryogenesis and gametogenesis. In tumorigenesis, DNA methylation by Dnmt3b is known to play a role in the inactivation of tumor suppressor genes. In addition, a point mutation in the PWWP domain of Dnmt3b has been identified in patients with ICF syndrome (immunodeficiency, centromeric instability, and facial anomalies), a rare autosomal recessive disorder characterized by hypomethylation of classical satellite DNA. The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding, proteins that function as transcription factors regulating a variety of developmental processes.
Probab=99.74 E-value=1.3e-18 Score=155.27 Aligned_cols=62 Identities=44% Similarity=0.901 Sum_probs=54.5
Q ss_pred CCCCceEEEecccCCCCCccccCCCCC------CCcEEEEEeCCCCCcccccccccccccccchHHHhHh
Q psy11975 357 LAEGDLVWGSVKGYPSWPGKLISPAPT------QGRVWVKWFGMSNEPLSEVEPATLKSLSQGLEAHHRS 420 (786)
Q Consensus 357 f~vGDLVWaKvkG~PwWPg~V~~~~~~------~g~~~V~fFG~~~~a~s~V~~k~LkpFsEglEaf~~~ 420 (786)
|.+||||||||+|||||||+|++++.. .++++|+|||+++ +++|++++|+||.|+++.|+..
T Consensus 1 f~vGDlVWaK~kg~pwWP~~V~~~~~~~~~~~~~~~~~V~fFGs~~--~a~v~~~~l~pf~e~~~~f~~~ 68 (87)
T cd05835 1 FNVGDLVWGKIKGFPWWPGRVVSITVTSKRPPVVGMRWVTWFGSGT--FSEVSVDKLSPFSEFFKAFSRY 68 (87)
T ss_pred CCCCCEEEEecCCCCCCCeEEechhhcccccCCCCeEEEEEeCCCC--EeEECHHHCcChhHhHHHHhhh
Confidence 789999999999999999999998542 4689999999985 6668999999999999998554
No 18
>cd05834 HDGF_related The PWWP domain is an essential part of the Hepatoma Derived Growth Factor (HDGF) family of proteins, and is necessary for DNA binding by HDGF. This family of endogenous nuclear-targeted mitogens includes HRP (HDGF-related proteins 1, 2, 3, 4, or HPR1, HPR2, HPR3, HPR4, respectively) and lens epithelium-derived growth factor, LEDGF. Members of the HDGF family have been linked to human diseases, and HDGF is a prognostic factor in several types of cancer. The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding, proteins that function as transcription factors regulating a variety of developmental processes.
Probab=99.72 E-value=3.2e-18 Score=151.79 Aligned_cols=63 Identities=27% Similarity=0.578 Sum_probs=55.8
Q ss_pred CCCCCceEEEecccCCCCCccccCCCC---CCCcEEEEEeCCCCCcccccccccccccccchHHHhHh
Q psy11975 356 GLAEGDLVWGSVKGYPSWPGKLISPAP---TQGRVWVKWFGMSNEPLSEVEPATLKSLSQGLEAHHRS 420 (786)
Q Consensus 356 ~f~vGDLVWaKvkG~PwWPg~V~~~~~---~~g~~~V~fFG~~~~a~s~V~~k~LkpFsEglEaf~~~ 420 (786)
.|.+||||||||+|||||||+|++++. ..++|+|+|||++++ ++|..++|++|.+++++|...
T Consensus 2 ~f~~GdlVwaK~kGyp~WPa~I~~~~~~~~~~~~~~V~FfGt~~~--a~v~~~~l~pf~~~~~~~~~~ 67 (83)
T cd05834 2 QFKAGDLVFAKVKGYPAWPARVDEPEDWKPPGKKYPVYFFGTHET--AFLKPEDLFPYTENKKKFGKP 67 (83)
T ss_pred CCCCCCEEEEecCCCCCCCEEEecccccCCCCCEEEEEEeCCCCE--eEECHHHceecccchhhhccc
Confidence 699999999999999999999999884 357899999999964 568999999999998887654
No 19
>cd05836 N_Pac_NP60 The PWWP domain is an essential part of the cytokine-like nuclear factor n-pac protein, or NP60, which enhances the activity of MAP2K4 and MAP2K6 kinases to phosphorylate p38-alpha. In a variety of cell lines, NP60 has been shown to localize to the nucleus. In addition to the PWWP domain, NP60 also contains an AT-hook and a C-terminal NAD-binding domain. The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding proteins, that function as transcription factors regulating a variety of developmental processes.
Probab=99.71 E-value=4.1e-18 Score=152.00 Aligned_cols=61 Identities=31% Similarity=0.709 Sum_probs=53.5
Q ss_pred CCCCceEEEecccCCCCCccccCCCCC-------CCcEEEEEeCCCCCcccccccccccccccchHHHhH
Q psy11975 357 LAEGDLVWGSVKGYPSWPGKLISPAPT-------QGRVWVKWFGMSNEPLSEVEPATLKSLSQGLEAHHR 419 (786)
Q Consensus 357 f~vGDLVWaKvkG~PwWPg~V~~~~~~-------~g~~~V~fFG~~~~a~s~V~~k~LkpFsEglEaf~~ 419 (786)
|.+||||||||+|||||||+|++++.. .+.++|+|||+++ ++||..++|++|.+++++|.+
T Consensus 1 f~~GDlVwaK~~g~P~WPa~V~~~~~~~~~~~~~~~~~~V~FFG~~~--~~wv~~~~l~pF~~~~~~~~~ 68 (86)
T cd05836 1 LKLGDLVWAKMKGFPPWPGRIVKPPKDLKKPRGKAKCFFVFFFGSEN--HAWIKEENIKPYHEHKEEMIK 68 (86)
T ss_pred CCCCCEEEEeCCCCCCCCEEEechhhhcccccCCCCeEEEEEeCCCC--EEEECHHhCeechhhHHHHhc
Confidence 789999999999999999999997632 3679999999995 566899999999999998863
No 20
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=99.71 E-value=6.4e-17 Score=158.03 Aligned_cols=138 Identities=14% Similarity=0.098 Sum_probs=116.7
Q ss_pred ccCC-CCeEEEeCCCCC----HHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHhcC--CCCEEEEeCC
Q psy11975 510 EREW-QADLLKPQKHTT----TRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNS--PIPVIIYNNT 582 (786)
Q Consensus 510 evaG-RVPVIaGVGa~S----T~EAIELAr~Ae~aGADAVmViPPyY~kps~S~eeLv~YFraIAeAt--dLPIiLYNiP 582 (786)
.+++ ++||++|+++.+ ++++++++++|+++|||++++.+|+|+.++.+++++++||++|++++ ++|+++||+|
T Consensus 43 ~~~~~~~~v~~~v~~~~~~~~~~~~~~~a~~a~~~Gad~i~v~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~pv~iy~~p 122 (201)
T cd00945 43 ALAGSDVPVIVVVGFPTGLTTTEVKVAEVEEAIDLGADEIDVVINIGSLKEGDWEEVLEEIAAVVEAADGGLPLKVILET 122 (201)
T ss_pred HhCCCCCeEEEEecCCCCCCcHHHHHHHHHHHHHcCCCEEEEeccHHHHhCCCHHHHHHHHHHHHHHhcCCceEEEEEEC
Confidence 3456 899999999999 99999999999999999999999999876434899999999999995 8999999999
Q ss_pred CCcCCccCHHHHHHH---HhCCCEEEEEeC-C-------HHHHHHHHhhcC-CCCEEEEeCCc--chhhhhhccCCcccc
Q psy11975 583 FVTNIDISVDTLVKL---AHHENIRGVKDT-D-------NIKLANMANQTK-DLNFSVFAGSA--GYLLSGLLVGCAGGI 648 (786)
Q Consensus 583 ~~TGv~LSpelL~rL---AeiPNVVGIKDS-D-------l~ri~~ll~~~~-~~df~Vf~G~D--elLL~aL~~GAdG~I 648 (786)
..+ ++++++.++ ++.+++.+||++ . +.++.++++... +-+|.++.|.+ +.+.+++..|++|++
T Consensus 123 ~~~---~~~~~~~~~~~~~~~~g~~~iK~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~gg~~~~~~~~~~~~~Ga~g~~ 199 (201)
T cd00945 123 RGL---KTADEIAKAARIAAEAGADFIKTSTGFGGGGATVEDVKLMKEAVGGRVGVKAAGGIKTLEDALAAIEAGADGIG 199 (201)
T ss_pred CCC---CCHHHHHHHHHHHHHhCCCEEEeCCCCCCCCCCHHHHHHHHHhcccCCcEEEECCCCCHHHHHHHHHhccceee
Confidence 876 677877776 457999999998 3 577777766321 23688899988 788999999999997
Q ss_pred cc
Q psy11975 649 NA 650 (786)
Q Consensus 649 sg 650 (786)
.+
T Consensus 200 ~g 201 (201)
T cd00945 200 TS 201 (201)
T ss_pred cC
Confidence 64
No 21
>smart00293 PWWP domain with conserved PWWP motif. conservation of Pro-Trp-Trp-Pro residues
Probab=99.63 E-value=2.2e-16 Score=132.93 Aligned_cols=53 Identities=34% Similarity=0.703 Sum_probs=46.4
Q ss_pred CCCCceEEEecccCCCCCccccCCCCC----------CCcEEEEEeCCCCCcccccccccccccc
Q psy11975 357 LAEGDLVWGSVKGYPSWPGKLISPAPT----------QGRVWVKWFGMSNEPLSEVEPATLKSLS 411 (786)
Q Consensus 357 f~vGDLVWaKvkG~PwWPg~V~~~~~~----------~g~~~V~fFG~~~~a~s~V~~k~LkpFs 411 (786)
|.+||||||||+|||||||+|++++.. .+.++|+|||++++ +||+.++|++|+
T Consensus 1 f~~GdlVwaK~~G~p~WPa~V~~~~~~~~~~~~~~~~~~~~~V~Ffg~~~~--awv~~~~l~p~~ 63 (63)
T smart00293 1 FKPGDLVWAKMKGFPWWPALVVSPKETPDNIRKRKRFENLYPVLFFGDKDT--AWISSSKLFPLT 63 (63)
T ss_pred CCCCCEEEEECCCCCCCCeEEcCcccCChhHhhccCCCCEEEEEEeCCCCE--EEECccceeeCC
Confidence 789999999999999999999998632 35899999999964 668999999984
No 22
>cd05840 SPBC215_ISWI_like The PWWP domain is a component of the S. pombe hypothetical protein SPBC215, as well as ISWI complex protein 4. The ISWI (imitation switch) proteins are ATPases responsible for chromatin remodeling in eukaryotes, and SPBC215 is proposed to also bind chromatin. The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding, proteins that function as transcription factors regulating a variety of developmental processes.
Probab=99.62 E-value=2.3e-16 Score=142.77 Aligned_cols=59 Identities=25% Similarity=0.438 Sum_probs=49.4
Q ss_pred CCCCceEEEecccCCCCCccccCCCC------------CCCcEEEEEeCCCCCcccccccccccccccc-hHHH
Q psy11975 357 LAEGDLVWGSVKGYPSWPGKLISPAP------------TQGRVWVKWFGMSNEPLSEVEPATLKSLSQG-LEAH 417 (786)
Q Consensus 357 f~vGDLVWaKvkG~PwWPg~V~~~~~------------~~g~~~V~fFG~~~~a~s~V~~k~LkpFsEg-lEaf 417 (786)
|.+||||||||+|||||||+|+++.. ..+.|+|+|||++ .++||..++|++|++. .+.|
T Consensus 1 f~~GDlVwaK~~GyPwWPA~V~~~~~~p~~~l~~~~~~~~~~~~V~FFg~~--~~~Wv~~~~l~pl~~~~~~~~ 72 (93)
T cd05840 1 FQPGDRVLAKVKGFPAWPAIVVPEEMLPDSVLKGKKKKNKRTYPVMFFPDG--DYYWVPNKDLKPLTEEKIAKF 72 (93)
T ss_pred CCCCCEEEEeCCCCCCCCEEECChHHCCHHHHhcccCCCCCeEEEEEeCCC--cEEEEChhhcccCCHHHHHHH
Confidence 78999999999999999999999641 2367999999998 5677899999999954 4444
No 23
>cd06080 MUM1_like Mutated melanoma-associated antigen 1 (MUM-1) is a melanoma-associated antigen (MAA). MUM-1 belongs to the mutated or aberrantly expressed type of MAAs, along with antigens such as CDK4, beta-catenin, gp100-in4, p15, and N-acetylglucosaminyltransferase V. It is highly expressed in several types of human cancers. The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding, proteins that function as transcription factors regulating a variety of developmental processes.
Probab=99.61 E-value=5.4e-16 Score=136.89 Aligned_cols=61 Identities=21% Similarity=0.529 Sum_probs=54.6
Q ss_pred CCCCceEEEecccCCCCCccccCCCCCCCcEEEEEeCCC-CCcccccccccccccccchHHHhH
Q psy11975 357 LAEGDLVWGSVKGYPSWPGKLISPAPTQGRVWVKWFGMS-NEPLSEVEPATLKSLSQGLEAHHR 419 (786)
Q Consensus 357 f~vGDLVWaKvkG~PwWPg~V~~~~~~~g~~~V~fFG~~-~~a~s~V~~k~LkpFsEglEaf~~ 419 (786)
|.+|||||||++|||||||+|.+.....++++|+|||++ .+ +++..++|++|.+++++..+
T Consensus 1 f~~gdlVWaK~~g~P~WPa~I~~~~~~~~k~~V~FfG~~~~~--a~~~~~~l~p~~~~~~~~ek 62 (80)
T cd06080 1 FEKNDLVWAKIQGYPWWPAVIKSISRKKQKARVNFIGDNMQS--EKKGIRVVKRWLKHFDCTEK 62 (80)
T ss_pred CCCCCEEEEeCCCCCCCCEEEeeecCCCCEEEEEEeCCCCce--eccchhhcccccccHHHHHH
Confidence 789999999999999999999998877789999999999 44 44678899999999998765
No 24
>PF00855 PWWP: PWWP domain; InterPro: IPR000313 Upon characterisation of WHSC1, a gene mapping to the Wolf-Hirschhornsyndrome critical region and at its C terminus similar to the Drosophila melanogaster ASH1/trithorax group proteins, a novel protein domain designated PWWP domain was identified []. The PWWP domain is named after a conserved Pro-Trp-Trp-Pro motif. It is present in proteins of nuclear origin and plays a role in cell growth and differentiation. Due to its position, the composition of amino acids close to the PWWP motif and the pattern of other domains present it has been suggested that the domain is involved in protein-protein interactions [].; PDB: 3LYI_B 2L89_A 2NLU_A 1RI0_A 1KHC_A 3QKJ_C 2DAQ_A 1N27_A 3PFS_B 3QJ6_A ....
Probab=99.61 E-value=2.1e-16 Score=138.27 Aligned_cols=62 Identities=35% Similarity=0.768 Sum_probs=53.6
Q ss_pred CCCCceEEEecccCCCCCccccCCCC------CCCcEEEEEeCCCCCcccccccccccccccchHHHhHh
Q psy11975 357 LAEGDLVWGSVKGYPSWPGKLISPAP------TQGRVWVKWFGMSNEPLSEVEPATLKSLSQGLEAHHRS 420 (786)
Q Consensus 357 f~vGDLVWaKvkG~PwWPg~V~~~~~------~~g~~~V~fFG~~~~a~s~V~~k~LkpFsEglEaf~~~ 420 (786)
|.+|||||||++|||||||+|++++. ..+.++|+|||++ .+++|+.++|.+|.++.+.+.+.
T Consensus 1 f~~GdlVWaK~~g~pwWPa~V~~~~~~~~~~~~~~~~~V~Ffg~~--~~~wv~~~~i~~f~~~~~~~~~~ 68 (86)
T PF00855_consen 1 FRPGDLVWAKLKGYPWWPARVCDPDEKSKKKRKDGHVLVRFFGDN--DYAWVKPSNIKPFSEFKEKLKKK 68 (86)
T ss_dssp -STTEEEEEEETTSEEEEEEEEECCHCTSCSSSSTEEEEEETTTT--EEEEEEGGGEEECCHHHHHHHHH
T ss_pred CCCCCEEEEEeCCCCCCceEEeecccccccCCCCCEEEEEecCCC--CEEEECHHHhhChhhhHHHHHHh
Confidence 78999999999999999999999863 2468999999999 46778999999999888877654
No 25
>cd05837 MSH6_like The PWWP domain is present in MSH6, a mismatch repair protein homologous to bacterial MutS. The PWWP domain of histone-lysine N-methyltransferase, also known as Nuclear SET domain-containing protein 3, is also included. Mutations in MSH6 have been linked to increased cancer susceptibility, particularly in hereditary nonpolyposis colorectal cancer in humans. The role of the PWWP domain in MSH6 is not clear; MSH6 orthologs found in S. cerevisiae, Caenorhabditis elegans and Arabidopsis thaliana lack the PWWP domain. Histone methyltransferases (HMTases) induce the posttranslational methylation of lysine residues in histones and play a role in apoptosis. In the HMTase Whistle, the PWWP domain is necessary for HMTase activity. The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain pro
Probab=99.60 E-value=5.6e-16 Score=144.04 Aligned_cols=61 Identities=28% Similarity=0.504 Sum_probs=51.7
Q ss_pred CCCCCceEEEecccCCCCCccccCCCCC------------CCcEEEEEeCCCCCcccccccccccccccchHHH
Q psy11975 356 GLAEGDLVWGSVKGYPSWPGKLISPAPT------------QGRVWVKWFGMSNEPLSEVEPATLKSLSQGLEAH 417 (786)
Q Consensus 356 ~f~vGDLVWaKvkG~PwWPg~V~~~~~~------------~g~~~V~fFG~~~~a~s~V~~k~LkpFsEglEaf 417 (786)
+|.+||||||||+|||||||+|++++.. .+.|+|+|||+.. .|+||+.++|++|.++.+..
T Consensus 2 ~~~~GdlVWaK~~g~PwWPa~V~~~~~~~~~~~~~~~~~~~~~~~V~FFG~~~-~~aWv~~~~l~pf~~~~~~~ 74 (110)
T cd05837 2 KYQVGDLVWAKVSGYPWWPCMVCSDPLLGTYTKTKRNKRKPRQYHVQFFGDNP-ERAWISEKSLKPFKGSKQFE 74 (110)
T ss_pred CCCCCCEEEEeCCCCCCCCEEEecccccchhhhhhhccCCCCeEEEEEcCCCC-CEEEecHHHccccCCchhhh
Confidence 6999999999999999999999975431 3689999999863 57889999999998886553
No 26
>cd05162 PWWP The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding, proteins that function as transcription factors regulating a variety of developmental processes. The function of the PWWP domain is still not known precisely; however, based on the fact that other regions of PWWP-domain proteins are responsible for nuclear localization and DNA-binding, is likely that the PWWP domain acts as a site for protein-protein binding interactions, influencing chromatin remodeling and thereby regulating transcriptional processes. Some PWWP-domain proteins have been linked to cancer or other diseases; some are known to function as growth factors.
Probab=99.59 E-value=9.2e-16 Score=135.87 Aligned_cols=58 Identities=36% Similarity=0.780 Sum_probs=51.2
Q ss_pred CCCCceEEEecccCCCCCccccCCCCC---------CCcEEEEEeCCCCCcccccccccccccccchHH
Q psy11975 357 LAEGDLVWGSVKGYPSWPGKLISPAPT---------QGRVWVKWFGMSNEPLSEVEPATLKSLSQGLEA 416 (786)
Q Consensus 357 f~vGDLVWaKvkG~PwWPg~V~~~~~~---------~g~~~V~fFG~~~~a~s~V~~k~LkpFsEglEa 416 (786)
|.+|||||||++|||||||+|+++... .+.++|+|||++ .++||+.++|++|.++.+.
T Consensus 1 f~~GdlVwaK~~g~pwWPa~V~~~~~~~~~~~~~~~~~~~~V~Ffg~~--~~~wv~~~~l~pf~~~~~~ 67 (87)
T cd05162 1 FRPGDLVWAKMKGYPWWPALVVDPPKDSKKAKKKAKEGKVLVLFFGDK--TFAWVGAERLKPFTEHKES 67 (87)
T ss_pred CCCCCEEEEeCCCCCCCCEEEccccccchhhhccCCCCEEEEEEeCCC--cEEEeCccceeeccchHHh
Confidence 789999999999999999999998753 368999999988 5677899999999998765
No 27
>cd05841 BS69_related The PWWP domain is part of BS69 protein, a nuclear protein that specifically binds adenoviral E1A and Epstein-Barr viral EBNA2 proteins, suppressing their transactivation functions. BS69 is a multi-domain protein, containing bromo, PHD, PWWP, and MYND domains. The specific role of the PWWP domain within BS69 is not clearly identified, but BS69 functions in chromatin remodeling, consistent with other PWWP-containing proteins. The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding, proteins that function as transcription factors regulating a variety of developmental processes.
Probab=99.58 E-value=1.1e-15 Score=135.86 Aligned_cols=59 Identities=24% Similarity=0.572 Sum_probs=51.9
Q ss_pred CCCCCceEEEecccCCCCCccccCCCCCCCcEEEEEeC-CCCCcccccccccccccccchHHHh
Q psy11975 356 GLAEGDLVWGSVKGYPSWPGKLISPAPTQGRVWVKWFG-MSNEPLSEVEPATLKSLSQGLEAHH 418 (786)
Q Consensus 356 ~f~vGDLVWaKvkG~PwWPg~V~~~~~~~g~~~V~fFG-~~~~a~s~V~~k~LkpFsEglEaf~ 418 (786)
.+.+||||||||+|||||||+|+++.. +.|+|+||| +++ .++|..++|++|.++++++.
T Consensus 6 c~~p~dLVwAK~kGyp~WPAkV~~~~~--~~~~V~FFG~t~~--~a~v~~~~i~~~~~~~~~~~ 65 (83)
T cd05841 6 CRPPHELVWAKLKGFPYWPAKVMRVED--NQVDVRFFGGQHD--RAWIPSNNIQPISTEIPQQL 65 (83)
T ss_pred cCCCCCEEEEeCCCCCCCCEEEeecCC--CeEEEEEcCCCCC--eEEEehHHeeehhhhhhhhc
Confidence 478999999999999999999999864 789999999 875 56689999999999887653
No 28
>cd05838 WHSC1_related The PWWP domain was first identified in the WHSC1 (Wolf-Hirschhorn syndrome candidate 1) protein, a protein implicated in Wolf-Hirschhorn syndrome (WHS). When translocated, WHSC1 plays a role in lymphoid multiple myeloma (MM) disease, also known as plasmacytoma. WHCS1 proteins typically contain two copies of the PWWP domain. The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding, proteins that function as transcription factors regulating a variety of developmental processes.
Probab=99.57 E-value=1.7e-15 Score=137.49 Aligned_cols=61 Identities=21% Similarity=0.462 Sum_probs=51.0
Q ss_pred CCCCceEEEecccCCCCCccccCCCC----------CCCcEEEEEeCCCCCcccccccccccccccchHHHhH
Q psy11975 357 LAEGDLVWGSVKGYPSWPGKLISPAP----------TQGRVWVKWFGMSNEPLSEVEPATLKSLSQGLEAHHR 419 (786)
Q Consensus 357 f~vGDLVWaKvkG~PwWPg~V~~~~~----------~~g~~~V~fFG~~~~a~s~V~~k~LkpFsEglEaf~~ 419 (786)
+.+||||||||+|||||||+|+++.. ..+.++|+|||+++ ++||+.++|++|.|+...+..
T Consensus 1 ~~~GdlVWaK~~g~pwWPa~V~~~~~~p~~~~~~~~~~~~~~V~Ffgs~~--y~Wv~~~~l~pf~e~~~~~~~ 71 (95)
T cd05838 1 PLYGDIVWAKLGNFRWWPAIICDPREVPPNIQVLRHCIGEFCVMFFGTHD--YYWVHRGRVFPYQEGDKGFKE 71 (95)
T ss_pred CCcCCEEEEECCCCCCCCeEEcChhhcChhHhhccCCCCeEEEEEeCCCC--EEEeccccccchhhhhhhhhh
Confidence 35799999999999999999999652 12589999999995 666899999999998766543
No 29
>cd05839 BR140_related The PWWP domain is found in the BR140 family, which includes peregrin and BR140-like proteins 1 and 2. BR140 is the only family to contain the PWWP domain at the C terminus, with PHD and bromo domains in the N-terminal region. In myeloid leukemias, BR140 is disrupted by chromosomal translocations, similar to translocations of WHSC1 in lymphoid multiple myeloma. The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding proteins, that function as transcription factors regulating a variety of developmental processes.
Probab=99.37 E-value=5.4e-13 Score=124.52 Aligned_cols=56 Identities=27% Similarity=0.481 Sum_probs=48.2
Q ss_pred CCCCceEEEecccCCCCCccccCCCC-------------------------CCCcEEEEEeCCCCCcccccccccccccc
Q psy11975 357 LAEGDLVWGSVKGYPSWPGKLISPAP-------------------------TQGRVWVKWFGMSNEPLSEVEPATLKSLS 411 (786)
Q Consensus 357 f~vGDLVWaKvkG~PwWPg~V~~~~~-------------------------~~g~~~V~fFG~~~~a~s~V~~k~LkpFs 411 (786)
+.+|||||||++|||||||+|+++.. +...++|+||++.+ .|+||+.++|++|.
T Consensus 1 ~~pg~lVwaK~~g~P~wPa~iidp~~~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~lV~FFd~~~-s~~Wv~~~~l~pl~ 79 (111)
T cd05839 1 LEPLTLVWAKCRGYPSYPALIIDPKMPRDGVFHNGVPPDVLTLGEARAQNADERLYLVLFFDNKR-TWQWLPGDKLEPLG 79 (111)
T ss_pred CCCcCEeeeeecCCCCCCeEeeCCCCCCcccccCCCCchhhhHHHHHhccCCCcEEEEEEecCCC-cceecCHHHCcccc
Confidence 47899999999999999999999752 12358999999854 69999999999999
Q ss_pred cc
Q psy11975 412 QG 413 (786)
Q Consensus 412 Eg 413 (786)
++
T Consensus 80 ~~ 81 (111)
T cd05839 80 VD 81 (111)
T ss_pred cc
Confidence 86
No 30
>cd08205 RuBisCO_IV_RLP Ribulose bisphosphate carboxylase like proteins, Rubisco-Form IV. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions, like for example 2,3-diketo-5-methylthiopentyl-1-phosphate enolase or 5-methyl
Probab=99.24 E-value=6.3e-12 Score=138.58 Aligned_cols=158 Identities=15% Similarity=0.114 Sum_probs=121.8
Q ss_pred cCCCCCCCHHHHHHHHHhCCCCCccCCCccccccCCCCCCCCCCCCCccccCCCCeEEEeCCCCCHHHHHHHHHHHHHcC
Q psy11975 461 AHSSTSMPIQKRKSLLRKFPLWPELEPSTSELKRSDRPMSVGPRSVRPSEREWQADLLKPQKHTTTRATIDLTQKAAKAG 540 (786)
Q Consensus 461 agE~~sLT~dER~~Lle~~~~wve~~a~~~e~~~~~~~~~~~~r~v~veevaGRVPVIaGVGa~ST~EAIELAr~Ae~aG 540 (786)
.+|...|+.+||.++++. +++.+. ++++++.++++++++. ++|+++++++|+++|
T Consensus 169 ~ge~~~~~~eER~~~v~~---av~~a~---------------------~~TG~~~~y~~nit~~-~~e~i~~a~~a~~~G 223 (367)
T cd08205 169 LADQPYAPFEERVRACME---AVRRAN---------------------EETGRKTLYAPNITGD-PDELRRRADRAVEAG 223 (367)
T ss_pred ccCcccCCHHHHHHHHHH---HHHHHH---------------------HhhCCcceEEEEcCCC-HHHHHHHHHHHHHcC
Confidence 778899999999999888 554321 2344556666677664 699999999999999
Q ss_pred CCEEEEcCCCCCCCC---CCHHH---HHHHHHH-------------------HHhcCCCCEEEEeCCCCcCCccCHHHHH
Q psy11975 541 ANAALILCPYYFQKK---MTEDL---IYEHFIS-------------------VADNSPIPVIIYNNTFVTNIDISVDTLV 595 (786)
Q Consensus 541 ADAVmViPPyY~kps---~S~ee---Lv~YFra-------------------IAeAtdLPIiLYNiP~~TGv~LSpelL~ 595 (786)
||++|+.+|+|.... +.+++ |..|+.. |++.+++|+++||+|. .++.++++.+.
T Consensus 224 ad~vmv~~~~~g~~~~~~l~~~~~lpi~~H~a~~ga~~~~~~~g~~~~~~~kl~RlaGad~~~~~~~~-gk~~~~~~~~~ 302 (367)
T cd08205 224 ANALLINPNLVGLDALRALAEDPDLPIMAHPAFAGALSRSPDYGSHFLLLGKLMRLAGADAVIFPGPG-GRFPFSREECL 302 (367)
T ss_pred CCEEEEecccccccHHHHHHhcCCCeEEEccCcccccccCCCCcCCHHHHHHHHHHcCCCccccCCCc-cCcCCCHHHHH
Confidence 999999999997543 11223 3444555 8999999999999997 48999999999
Q ss_pred HHHh--CCCEEEEEeC--------CHHHHHHHHhhcCCCCEEEEeCCcchhh-hhhccCCc
Q psy11975 596 KLAH--HENIRGVKDT--------DNIKLANMANQTKDLNFSVFAGSAGYLL-SGLLVGCA 645 (786)
Q Consensus 596 rLAe--iPNVVGIKDS--------Dl~ri~~ll~~~~~~df~Vf~G~DelLL-~aL~~GAd 645 (786)
+|++ .+++.++|.+ +..++.++++ ..++++.++.|.+-+-. +....|+.
T Consensus 303 ~la~~~~~~~~~iK~~~Pv~sgG~~~~~v~~l~~-~~G~dv~~~~GGgi~gHp~g~~ag~~ 362 (367)
T cd08205 303 AIARACRRPLGGIKPALPVPSGGMHPGRVPELYR-DYGPDVILLAGGGILGHPDGAAAGVR 362 (367)
T ss_pred HHHHHHhCccccCCCceeeccCCCCHHHHHHHHH-HhCCcEEEEcCchhcCCCCChHHHHH
Confidence 9996 7999999997 5678888887 46789999999886533 34555543
No 31
>KOG1904|consensus
Probab=99.07 E-value=7.3e-11 Score=133.41 Aligned_cols=68 Identities=25% Similarity=0.487 Sum_probs=58.4
Q ss_pred CCCCCCCceEEEecccCCCCCccccCCCCC-----CCcEEEEEeCCCCCcccccccccccccccchHHHhHhhhh
Q psy11975 354 LLGLAEGDLVWGSVKGYPSWPGKLISPAPT-----QGRVWVKWFGMSNEPLSEVEPATLKSLSQGLEAHHRSRKK 423 (786)
Q Consensus 354 ~~~f~vGDLVWaKvkG~PwWPg~V~~~~~~-----~g~~~V~fFG~~~~a~s~V~~k~LkpFsEglEaf~~~~kr 423 (786)
...|.+||||||||+|||.|||+|.+.+.. ..+|.|+|||++++ ++|.+++|++|..+.+.+.+..++
T Consensus 10 ~~~~~~GDLV~AKlkgyp~WParI~~~~~~~~kp~pkky~V~FfGT~e~--Afl~p~dlqpy~~~k~~~g~~~k~ 82 (496)
T KOG1904|consen 10 AGNFKCGDLVFAKLKGYPPWPARIRNGPDGAVKPPPKKYTVFFFGTKET--AFLKPKDLQPYMLNKEKLGKPNKR 82 (496)
T ss_pred cCCCCCCceeeecccCCCCCcccccCcccccccCCCceeEEEEeccCcc--cccchhhccchhhhhhhcccchhh
Confidence 346999999999999999999999997753 46899999999965 557899999999998888776655
No 32
>cd08210 RLP_RrRLP Ribulose bisphosphate carboxylase like proteins (RLPs) similar to R.rubrum RLP. RLP from Rhodospirillum rubrum plays a role in an uncharacterized sulfur salvage pathway and has been shown to catalyze a novel isomerization reaction that converts 5-methylthio-d-ribulose 1-phosphate to a 3:1 mixture of 1-methylthioxylulose 5-phosphate and 1-methylthioribulose 5-phosphate.
Probab=98.93 E-value=1.6e-09 Score=119.58 Aligned_cols=156 Identities=14% Similarity=0.095 Sum_probs=122.6
Q ss_pred cCCCCCCCHHHHHHHHHhCCCCCccCCCccccccCCCCCCCCCCCCCccccCCCCeEEEeCCCCCHHHHHHHHHHHHHcC
Q psy11975 461 AHSSTSMPIQKRKSLLRKFPLWPELEPSTSELKRSDRPMSVGPRSVRPSEREWQADLLKPQKHTTTRATIDLTQKAAKAG 540 (786)
Q Consensus 461 agE~~sLT~dER~~Lle~~~~wve~~a~~~e~~~~~~~~~~~~r~v~veevaGRVPVIaGVGa~ST~EAIELAr~Ae~aG 540 (786)
.++...++.+||.+++.. .++.+ -+++++++++++++++. +.|++++|+.|+++|
T Consensus 164 l~~~~~~p~~eRv~~v~~---av~~a---------------------~~eTG~~~~y~~Nita~-~~em~~ra~~a~~~G 218 (364)
T cd08210 164 LADQPFAPFEERVKACQE---AVAEA---------------------NAETGGRTLYAPNVTGP-PTQLLERARFAKEAG 218 (364)
T ss_pred ccCccCCCHHHHHHHHHH---HHHHH---------------------HhhcCCcceEEEecCCC-HHHHHHHHHHHHHcC
Confidence 456678888888887776 44322 14567889999999996 669999999999999
Q ss_pred CCEEEEcCCCCC-----CCCCCHHHH----HHH-------------------HHHHHhcCCCCEEEEeCCCCcCCccCHH
Q psy11975 541 ANAALILCPYYF-----QKKMTEDLI----YEH-------------------FISVADNSPIPVIIYNNTFVTNIDISVD 592 (786)
Q Consensus 541 ADAVmViPPyY~-----kps~S~eeL----v~Y-------------------FraIAeAtdLPIiLYNiP~~TGv~LSpe 592 (786)
++++|+.++.|. ... ++.. ..| |..|++.+++|+++||+|. .++.++.+
T Consensus 219 a~~vMv~~~~~G~~~~~~l~--~~~~~l~i~aHra~~ga~~~~~~~is~~~~~~kl~RlaGad~~~~~~~~-g~~~~~~e 295 (364)
T cd08210 219 AGGVLIAPGLTGLDTFRELA--EDFDFLPILAHPAFAGAFVSSGDGISHALLFGTLFRLAGADAVIFPNYG-GRFGFSRE 295 (364)
T ss_pred CCEEEeecccchHHHHHHHH--hcCCCcEEEEccccccccccCCCcccHHHHHHHHHHHhCCCEEEeCCCc-CCccCCHH
Confidence 999999999886 222 3333 444 9999999999999999996 58999999
Q ss_pred HHHHHHh--CCCEEEEEeC--------CHHHHHHHHhhcCCCCEEEEeCCcchhh-hhhccCCc
Q psy11975 593 TLVKLAH--HENIRGVKDT--------DNIKLANMANQTKDLNFSVFAGSAGYLL-SGLLVGCA 645 (786)
Q Consensus 593 lL~rLAe--iPNVVGIKDS--------Dl~ri~~ll~~~~~~df~Vf~G~DelLL-~aL~~GAd 645 (786)
++.++++ .+++.+||.+ +..++.++++ ..++++.++.|.+-+-. +....|+.
T Consensus 296 ~~~~ia~~~~~~~~~iK~~~Pv~sgG~~~~~v~~l~~-~~G~Dvil~aGGgi~gHp~g~~ag~~ 358 (364)
T cd08210 296 ECQAIADACRRPMGGLKPILPAPGGGMSVERAPEMVE-LYGPDVMLLIGGSLLRAGDDLTENTR 358 (364)
T ss_pred HHHHHHHHhcCCccccCCCcCcCCCCcCHHHHHHHHH-HcCCcEEEEccccccCCCCChHHHHH
Confidence 9999996 6899999997 5678888887 46788999999875533 33444443
No 33
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=98.42 E-value=1.3e-06 Score=91.83 Aligned_cols=96 Identities=15% Similarity=0.159 Sum_probs=80.6
Q ss_pred CCCCCCCHHHHHHHHHhCCCCCccCCCccccccCCCCCCCCCCCCCccccCC--CCeEEEe-----CCCCCHHHHHHHHH
Q psy11975 462 HSSTSMPIQKRKSLLRKFPLWPELEPSTSELKRSDRPMSVGPRSVRPSEREW--QADLLKP-----QKHTTTRATIDLTQ 534 (786)
Q Consensus 462 gE~~sLT~dER~~Lle~~~~wve~~a~~~e~~~~~~~~~~~~r~v~veevaG--RVPVIaG-----VGa~ST~EAIELAr 534 (786)
+|...++.+|+.+.+++ .+++ +++ +++||++ ++..+++|+|++++
T Consensus 116 ~~~~~~~~ee~~~ki~a---a~~a-------------------------~~~~~~~~IiARTDa~~~~~~~~~eai~Ra~ 167 (243)
T cd00377 116 GGKVLVPIEEFVAKIKA---ARDA-------------------------RDDLPDFVIIARTDALLAGEEGLDEAIERAK 167 (243)
T ss_pred CCCeecCHHHHHHHHHH---HHHH-------------------------HhccCCeEEEEEcCchhccCCCHHHHHHHHH
Confidence 56788999999999998 4443 233 7899999 76678999999999
Q ss_pred HHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHhcCCCCEEEEeCCCCcCCccCHHHHHHH
Q psy11975 535 KAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKL 597 (786)
Q Consensus 535 ~Ae~aGADAVmViPPyY~kps~S~eeLv~YFraIAeAtdLPIiLYNiP~~TGv~LSpelL~rL 597 (786)
.++++|||++++.+|. + .+++++|+++.++|+++|+.|... .++.+.|.+|
T Consensus 168 ay~~AGAD~v~v~~~~----~------~~~~~~~~~~~~~Pl~~~~~~~~~--~~~~~~l~~l 218 (243)
T cd00377 168 AYAEAGADGIFVEGLK----D------PEEIRAFAEAPDVPLNVNMTPGGN--LLTVAELAEL 218 (243)
T ss_pred HHHHcCCCEEEeCCCC----C------HHHHHHHHhcCCCCEEEEecCCCC--CCCHHHHHHC
Confidence 9999999999999876 3 378888999999999999988632 5788888888
No 34
>PF06187 DUF993: Protein of unknown function (DUF993); InterPro: IPR009334 This entry consists of several hypothetical bacterial proteins of unknown function.; PDB: 4DNH_A.
Probab=97.48 E-value=0.0012 Score=72.38 Aligned_cols=256 Identities=14% Similarity=0.087 Sum_probs=143.9
Q ss_pred CCCCHHHHHHHHHhCCCCCccCCCccccccCCCCCCCCCCCCCccccCCCCeEEEeCC--------CCCHHHHH----HH
Q psy11975 465 TSMPIQKRKSLLRKFPLWPELEPSTSELKRSDRPMSVGPRSVRPSEREWQADLLKPQK--------HTTTRATI----DL 532 (786)
Q Consensus 465 ~sLT~dER~~Lle~~~~wve~~a~~~e~~~~~~~~~~~~r~v~veevaGRVPVIaGVG--------a~ST~EAI----EL 532 (786)
.-|+-..-++|++. =.+. .+ .+++ .|.+|+| ..++++++ |.
T Consensus 85 MGLDW~~a~ELIrR---s~ae------A~----------------~~g~--~ia~GaGTD~L~~~~~~sld~V~~AY~eQ 137 (382)
T PF06187_consen 85 MGLDWAAARELIRR---SAAE------AR----------------AVGA--RIACGAGTDQLDPAPAASLDDVIAAYEEQ 137 (382)
T ss_dssp TTB-HHHHHHHHHH---HHHH------HH----------------TSS----EEEEE--TTS---TT--HHHHHHHHHHH
T ss_pred CCCChHHHHHHHHH---HHHH------HH----------------hcCC--cEEeecCcCCCCCCCCCCHHHHHHHHHHH
Confidence 56888999999987 2111 11 1233 4666776 22444443 45
Q ss_pred HHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHhcCCCCEEEEeC-----CCCcCCc------cCHHHHHHHH-h-
Q psy11975 533 TQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNN-----TFVTNID------ISVDTLVKLA-H- 599 (786)
Q Consensus 533 Ar~Ae~aGADAVmViPPyY~kps~S~eeLv~YFraIAeAtdLPIiLYNi-----P~~TGv~------LSpelL~rLA-e- 599 (786)
....++.|+..|+...=...+..-++++..+-|.+|.+.++-||||+-. |...|+. -..+++.+|. +
T Consensus 138 ~~~ve~~Gg~~ILMASRaLA~~A~~p~DY~~VY~~lL~q~~~PVILHWLG~mFDPaL~GYWGs~d~~~A~~t~l~lI~~~ 217 (382)
T PF06187_consen 138 LEAVEAAGGRVILMASRALAAVARSPDDYLRVYDRLLSQADEPVILHWLGDMFDPALAGYWGSADLDAAMDTVLELIAAH 217 (382)
T ss_dssp HHHHHHTT--EEE---HHHHHH--SHHHHHHHHHHHHHH-SS-EEEEEE-TTT-GGGTTTTS-SSHHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCeEEEeehHHHHHhhCCHHHHHHHHHHHHHHcCCCEEEEecccccCcccccccCCCcHHHHHHHHHHHHHhC
Confidence 6677889999777665333221125999999999999999999999876 5545551 2356777776 3
Q ss_pred CCCEEEEEeC--CHHHHHHHHhhcCCCCEEEEeCCcchhhhhhccC-----CccccccccccccHHHHHHHHHHHcCCHH
Q psy11975 600 HENIRGVKDT--DNIKLANMANQTKDLNFSVFAGSAGYLLSGLLVG-----CAGGINALSAVLGGPICELYDLAKAGKWE 672 (786)
Q Consensus 600 iPNVVGIKDS--Dl~ri~~ll~~~~~~df~Vf~G~DelLL~aL~~G-----AdG~Isg~aN~~Pel~vaL~eA~~aGD~e 672 (786)
.+.|-|||.| |..+=.++.+ ..+..+++|+|+|-.+. .|..| .+..++.+.-+.|... +-.+++.+||.+
T Consensus 218 ~~kVdGIKiSLLD~~~Ei~lRr-rLP~gVr~YTGDDFnYp-eLI~GD~~g~S~ALLGIFdaiAPaAs-aAl~~Ld~gd~~ 294 (382)
T PF06187_consen 218 ADKVDGIKISLLDAEKEIALRR-RLPEGVRMYTGDDFNYP-ELIAGDGQGHSHALLGIFDAIAPAAS-AALAALDAGDTA 294 (382)
T ss_dssp GGGEEEEEEES--HHHHHHHHT-S--TT-EEEE--TTTHH-HHHH--SS---EEEESHHHHTHHHHH-HHHHHHHTT-HH
T ss_pred hhhcCeeEecccCcHHHHHHHH-hCCccceeecCCCcCcH-HHhcCCCCCccHHHhhcchhhchHHH-HHHHHHhCCCHH
Confidence 5899999999 8777666666 56789999999885443 44445 4555555566666544 456777899999
Q ss_pred HHHHHHHHhhhhHHHHHhhhhccccCHHHHHHHHHHcCCCCCCCCC-CCCCCCCHHHHHHHHHHHHHcCCCCccchhchh
Q psy11975 673 EAMKLQHRLVKPDVTVRNVLLMKEMGVPGVRAAMELYGYYGGRSRR-PLPAALKPGGAEKIKQVLTEAGFLVPGVRAAME 751 (786)
Q Consensus 673 eAreLQ~rL~pLi~~l~~~~~~~~~~ia~lKaaL~lrGI~~G~vR~-PL~~pLseeekaeL~~~L~~lGll~~~~~~~~~ 751 (786)
+.+++.+.-.+|-+.+.. .-..++-.++-.+..+.|.-...... =++-.=+-....++-++..++|++.....+.-+
T Consensus 295 ~f~~il~pTvpLsRhiF~--aPT~~YKtGvvFLAwLnGhQ~hF~MvgG~qsaRs~~hla~~frLAD~agll~dPelA~~R 372 (382)
T PF06187_consen 295 GFRAILDPTVPLSRHIFR--APTRYYKTGVVFLAWLNGHQDHFTMVGGLQSARSLPHLAELFRLADQAGLLPDPELAAAR 372 (382)
T ss_dssp HHHHHHTTHHHHHHHHT---SSGGGHHHHHHHHHHHTTSSS----GGGGGGSS-HHHHHHHHHHHHHTT--SSHHHHHHH
T ss_pred HHHHHhccchHhHHHhhc--CCchhhhhhHHHHHHHcCCCccceecCccccccchHHHHHHHHHHhhhCCCCCHHHHHHH
Confidence 999999988888877611 01122223333333455653221100 011011345678888888999998865544434
Q ss_pred h
Q psy11975 752 L 752 (786)
Q Consensus 752 ~ 752 (786)
|
T Consensus 373 m 373 (382)
T PF06187_consen 373 M 373 (382)
T ss_dssp H
T ss_pred H
Confidence 3
No 35
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase. A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.
Probab=97.47 E-value=0.00091 Score=72.37 Aligned_cols=100 Identities=13% Similarity=0.111 Sum_probs=73.9
Q ss_pred CCCCCCHHHHHHHHHhCCCCCccCCCccccccCCCCCCCCCCCCCccccCCCCeEEEe----CCCCCHHHHHHHHHHHHH
Q psy11975 463 SSTSMPIQKRKSLLRKFPLWPELEPSTSELKRSDRPMSVGPRSVRPSEREWQADLLKP----QKHTTTRATIDLTQKAAK 538 (786)
Q Consensus 463 E~~sLT~dER~~Lle~~~~wve~~a~~~e~~~~~~~~~~~~r~v~veevaGRVPVIaG----VGa~ST~EAIELAr~Ae~ 538 (786)
|...++.+|+.+.+++ .+++ ..+++++||+. +....++|+|++++.+++
T Consensus 128 ~~~l~s~ee~~~kI~A---a~~a------------------------~~~~~~~IiARTDa~~~~~~~~eAi~Ra~ay~e 180 (285)
T TIGR02320 128 AQPQASVEEFCGKIRA---GKDA------------------------QTTEDFMIIARVESLILGKGMEDALKRAEAYAE 180 (285)
T ss_pred cccccCHHHHHHHHHH---HHHh------------------------ccCCCeEEEEecccccccCCHHHHHHHHHHHHH
Confidence 5567899999999998 4332 13467899999 555679999999999999
Q ss_pred cCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHhcC-CCCEEEEeCCCCcCCccCHHHHHHH
Q psy11975 539 AGANAALILCPYYFQKKMTEDLIYEHFISVADNS-PIPVIIYNNTFVTNIDISVDTLVKL 597 (786)
Q Consensus 539 aGADAVmViPPyY~kps~S~eeLv~YFraIAeAt-dLPIiLYNiP~~TGv~LSpelL~rL 597 (786)
+|||++++. +... +.+++.++++.+.... ++|+++- |..++ .++.+.|.+|
T Consensus 181 AGAD~ifv~---~~~~--~~~ei~~~~~~~~~~~p~~pl~~~--~~~~~-~~~~~eL~~l 232 (285)
T TIGR02320 181 AGADGIMIH---SRKK--DPDEILEFARRFRNHYPRTPLVIV--PTSYY-TTPTDEFRDA 232 (285)
T ss_pred cCCCEEEec---CCCC--CHHHHHHHHHHhhhhCCCCCEEEe--cCCCC-CCCHHHHHHc
Confidence 999999996 2223 4899999999986433 5888642 43222 4566666666
No 36
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=97.35 E-value=0.0067 Score=66.56 Aligned_cols=89 Identities=15% Similarity=0.171 Sum_probs=67.2
Q ss_pred CCCCHHHHHHHHHhCCCCCccCCCccccccCCCCCCCCCCCCCccccCCCCeEEEeCCCCCHHHHHHHHHHHHHcCCCEE
Q psy11975 465 TSMPIQKRKSLLRKFPLWPELEPSTSELKRSDRPMSVGPRSVRPSEREWQADLLKPQKHTTTRATIDLTQKAAKAGANAA 544 (786)
Q Consensus 465 ~sLT~dER~~Lle~~~~wve~~a~~~e~~~~~~~~~~~~r~v~veevaGRVPVIaGVGa~ST~EAIELAr~Ae~aGADAV 544 (786)
.....|++.+.++. +.+ +. ++|||+++++.+.++.++.++.++++|||++
T Consensus 82 ~n~g~d~~~~~i~~---~~~-------------------------~~--~~pvi~sI~g~~~~e~~~~a~~~~~agad~i 131 (334)
T PRK07565 82 FYVGPEEYLELIRR---AKE-------------------------AV--DIPVIASLNGSSAGGWVDYARQIEQAGADAL 131 (334)
T ss_pred cCcCHHHHHHHHHH---HHH-------------------------hc--CCcEEEEeccCCHHHHHHHHHHHHHcCCCEE
Confidence 56778999888876 322 11 3799999999999999999999999999999
Q ss_pred EE---cCCCCCCC-CCCH-HHHHHHHHHHHhcCCCCEEEEeCCC
Q psy11975 545 LI---LCPYYFQK-KMTE-DLIYEHFISVADNSPIPVIIYNNTF 583 (786)
Q Consensus 545 mV---iPPyY~kp-s~S~-eeLv~YFraIAeAtdLPIiLYNiP~ 583 (786)
.+ .||..... +.+. +.+.+..++|.+++++||++.-.|.
T Consensus 132 elN~scpp~~~~~~g~~~~~~~~eil~~v~~~~~iPV~vKl~p~ 175 (334)
T PRK07565 132 ELNIYYLPTDPDISGAEVEQRYLDILRAVKSAVSIPVAVKLSPY 175 (334)
T ss_pred EEeCCCCCCCCCCccccHHHHHHHHHHHHHhccCCcEEEEeCCC
Confidence 98 55542211 1112 3366777889888899999998774
No 37
>KOG1081|consensus
Probab=96.95 E-value=0.0016 Score=74.75 Aligned_cols=89 Identities=19% Similarity=0.212 Sum_probs=57.5
Q ss_pred CCCCCCceEEEecccCCCCCccccCCCCCC--CcE-EEEEeCCCCCcccccccccccccccchHHHhHhhhhccCCcccc
Q psy11975 355 LGLAEGDLVWGSVKGYPSWPGKLISPAPTQ--GRV-WVKWFGMSNEPLSEVEPATLKSLSQGLEAHHRSRKKLQGLPVVA 431 (786)
Q Consensus 355 ~~f~vGDLVWaKvkG~PwWPg~V~~~~~~~--g~~-~V~fFG~~~~a~s~V~~k~LkpFsEglEaf~~~~kr~rkLpv~a 431 (786)
..+.+||+||-++..|+|||++|+.++... ... +|+|||++ +| .....+.++....+.+ ....++.-+...
T Consensus 134 ~~~~~~~~vw~~vg~~~~~~c~vc~~~~~~~~~~~~~~~f~~~~--~~--~~~~~~~~~~g~~~~~--l~~~~~~~s~~~ 207 (463)
T KOG1081|consen 134 KKREVGDLVWSKVGEYPWWPCMVCHDPLLPKGMKHDHVNFFGCY--AW--THEKRVFPYEGQSSKL--IPHSKKPASTMS 207 (463)
T ss_pred ccccceeEEeEEcCcccccccceecCcccchhhccccceeccch--hh--HHHhhhhhccchHHHh--hhhccccchhhh
Confidence 479999999999999999999999987532 223 89999993 55 4556777762222222 123334444444
Q ss_pred cccccccCCCCCCccccc
Q psy11975 432 GQAHFAGAHPGPGVGQMM 449 (786)
Q Consensus 432 gka~faga~pg~~~~~~~ 449 (786)
....-+-+..+...++|.
T Consensus 208 ~~~~~~~~r~~~~~~q~~ 225 (463)
T KOG1081|consen 208 EKIKEAKARFGKLKAQWE 225 (463)
T ss_pred hhhhcccchhhhcccchh
Confidence 444445555666666654
No 38
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=96.01 E-value=0.42 Score=52.21 Aligned_cols=154 Identities=16% Similarity=0.133 Sum_probs=96.2
Q ss_pred CCeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEE--cCCC------CCCCC--CCHHHHHHHHHHHHhcCCCCEEEEeCCC
Q psy11975 514 QADLLKPQKHTTTRATIDLTQKAAKAGANAALI--LCPY------YFQKK--MTEDLIYEHFISVADNSPIPVIIYNNTF 583 (786)
Q Consensus 514 RVPVIaGVGa~ST~EAIELAr~Ae~aGADAVmV--iPPy------Y~kps--~S~eeLv~YFraIAeAtdLPIiLYNiP~ 583 (786)
..|+|+++.+.+.++.++.|+.++++|+|+|=+ ..|. |.... -..+-+.+-.++|.+++++||.+.--.+
T Consensus 62 ~~p~i~ql~g~~~~~~~~aa~~~~~~G~d~IelN~gcP~~~~~~~~~Gs~l~~~~~~~~ei~~~vr~~~~~pv~vKir~g 141 (319)
T TIGR00737 62 ETPISVQLFGSDPDTMAEAAKINEELGADIIDINMGCPVPKITKKGAGSALLRDPDLIGKIVKAVVDAVDIPVTVKIRIG 141 (319)
T ss_pred cceEEEEEeCCCHHHHHHHHHHHHhCCCCEEEEECCCCHHHhcCCCccchHhCCHHHHHHHHHHHHhhcCCCEEEEEEcc
Confidence 469999999999999999999999999999955 3442 11100 1356677778888888899999885333
Q ss_pred CcCCccCH-HHHHHHHh--CCCEE--EE-E---e--C-CHHHHHHHHhhcCCCCEEE-EeCCc---chhhhhh-ccCCcc
Q psy11975 584 VTNIDISV-DTLVKLAH--HENIR--GV-K---D--T-DNIKLANMANQTKDLNFSV-FAGSA---GYLLSGL-LVGCAG 646 (786)
Q Consensus 584 ~TGv~LSp-elL~rLAe--iPNVV--GI-K---D--S-Dl~ri~~ll~~~~~~df~V-f~G~D---elLL~aL-~~GAdG 646 (786)
........ +++..|.+ ...|. |- + . . +++.+.++.+ .. ++.| .+|.= +.+...+ ..|++|
T Consensus 142 ~~~~~~~~~~~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~-~~--~ipvi~nGgI~~~~da~~~l~~~gad~ 218 (319)
T TIGR00737 142 WDDAHINAVEAARIAEDAGAQAVTLHGRTRAQGYSGEANWDIIARVKQ-AV--RIPVIGNGDIFSPEDAKAMLETTGCDG 218 (319)
T ss_pred cCCCcchHHHHHHHHHHhCCCEEEEEcccccccCCCchhHHHHHHHHH-cC--CCcEEEeCCCCCHHHHHHHHHhhCCCE
Confidence 22112233 33344433 23332 11 1 1 1 5555555554 22 2333 33331 2355666 478999
Q ss_pred cccccccc-ccHHHHHHHHHHHcCC
Q psy11975 647 GINALSAV-LGGPICELYDLAKAGK 670 (786)
Q Consensus 647 ~Isg~aN~-~Pel~vaL~eA~~aGD 670 (786)
++.|-+.+ -|.++.++-+.+..|.
T Consensus 219 VmigR~~l~~P~l~~~~~~~~~~~~ 243 (319)
T TIGR00737 219 VMIGRGALGNPWLFRQIEQYLTTGK 243 (319)
T ss_pred EEEChhhhhCChHHHHHHHHHhCCC
Confidence 99998765 5888888877776664
No 39
>PRK08227 autoinducer 2 aldolase; Validated
Probab=95.90 E-value=0.12 Score=55.77 Aligned_cols=136 Identities=10% Similarity=0.099 Sum_probs=84.8
Q ss_pred CCCeEEEeCCCC-------CHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHhcC---CCCEEEEeCC
Q psy11975 513 WQADLLKPQKHT-------TTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNS---PIPVIIYNNT 582 (786)
Q Consensus 513 GRVPVIaGVGa~-------ST~EAIELAr~Ae~aGADAVmViPPyY~kps~S~eeLv~YFraIAeAt---dLPIiLYNiP 582 (786)
..+|+|+.+.+. ..+..+--.+.|.++|||||.+.- |.... .+.+.++.+.+|++.+ ++|+++ -+|
T Consensus 73 ~~~~lil~ls~~t~~~~~~~~~~l~~sVeeAvrlGAdAV~~~v--~~Gs~-~E~~~l~~l~~v~~ea~~~G~Plla-~~p 148 (264)
T PRK08227 73 TNKPVVLRASGGNSILKELSNEAVAVDMEDAVRLNACAVAAQV--FIGSE-YEHQSIKNIIQLVDAGLRYGMPVMA-VTA 148 (264)
T ss_pred CCCcEEEEEcCCCCCCCCCCcccceecHHHHHHCCCCEEEEEE--ecCCH-HHHHHHHHHHHHHHHHHHhCCcEEE-Eec
Confidence 357899887762 234445557889999999999985 33322 4677888888888777 799998 335
Q ss_pred CCcCCccCHHHH---HHHH-hC-CCEEEEEeCCHHHHHHHHhhcCCCCEEEEeCCc---c----hhhhhhccCCcccccc
Q psy11975 583 FVTNIDISVDTL---VKLA-HH-ENIRGVKDTDNIKLANMANQTKDLNFSVFAGSA---G----YLLSGLLVGCAGGINA 650 (786)
Q Consensus 583 ~~TGv~LSpelL---~rLA-ei-PNVVGIKDSDl~ri~~ll~~~~~~df~Vf~G~D---e----lLL~aL~~GAdG~Isg 650 (786)
.-....=.++.+ .|++ ++ ..|+=++++. +.+.++++ ..+-.+.|-.|.- . +...++..|+.|...|
T Consensus 149 rG~~~~~~~~~ia~aaRiaaELGADiVK~~y~~-~~f~~vv~-a~~vPVviaGG~k~~~~~~L~~v~~ai~aGa~Gv~~G 226 (264)
T PRK08227 149 VGKDMVRDARYFSLATRIAAEMGAQIIKTYYVE-EGFERITA-GCPVPIVIAGGKKLPERDALEMCYQAIDEGASGVDMG 226 (264)
T ss_pred CCCCcCchHHHHHHHHHHHHHHcCCEEecCCCH-HHHHHHHH-cCCCcEEEeCCCCCCHHHHHHHHHHHHHcCCceeeec
Confidence 322222123433 4444 45 4688777774 55666766 3433444444432 1 1235778999998887
Q ss_pred ccccc
Q psy11975 651 LSAVL 655 (786)
Q Consensus 651 ~aN~~ 655 (786)
= |+|
T Consensus 227 R-NIf 230 (264)
T PRK08227 227 R-NIF 230 (264)
T ss_pred h-hhh
Confidence 5 543
No 40
>COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism]
Probab=95.80 E-value=0.11 Score=56.06 Aligned_cols=137 Identities=16% Similarity=0.166 Sum_probs=94.4
Q ss_pred cCCCCeEEEeCCCCC-------HHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHhcC---CCCEEEEe
Q psy11975 511 REWQADLLKPQKHTT-------TRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNS---PIPVIIYN 580 (786)
Q Consensus 511 vaGRVPVIaGVGa~S-------T~EAIELAr~Ae~aGADAVmViPPyY~kps~S~eeLv~YFraIAeAt---dLPIiLYN 580 (786)
-+.++|+|+..++.+ -...+-..+.|.++|||||.+.-..... ++.+.++-+.+|.+.+ ++|+++.=
T Consensus 74 y~~dvplivkl~~~t~l~~~~~~~~~~~~ve~ai~lgadAV~~~Vy~Gse---~e~~~i~~~~~v~~~a~~~Gmp~v~~~ 150 (265)
T COG1830 74 YAHDVPLIVKLNGSTSLSPDPNDQVLVATVEDAIRLGADAVGATVYVGSE---TEREMIENISQVVEDAHELGMPLVAWA 150 (265)
T ss_pred ccCCcCEEEEeccccccCCCcccceeeeeHHHHHhCCCcEEEEEEecCCc---chHHHHHHHHHHHHHHHHcCCceEEEE
Confidence 344899999888762 2334455778889999999998533322 4666677777766655 79999988
Q ss_pred CCCCcCC----ccCHHHHH---HHH-hC-CCEEEEEeC-CHHHHHHHHhhcCCCCEEEEeCCcc----hh----hhhhcc
Q psy11975 581 NTFVTNI----DISVDTLV---KLA-HH-ENIRGVKDT-DNIKLANMANQTKDLNFSVFAGSAG----YL----LSGLLV 642 (786)
Q Consensus 581 iP~~TGv----~LSpelL~---rLA-ei-PNVVGIKDS-Dl~ri~~ll~~~~~~df~Vf~G~De----lL----L~aL~~ 642 (786)
+|--.+. ...++.+. ||+ ++ --|+=.|++ |.+.|++++. .++-.+.+-.|.-. .+ .+++..
T Consensus 151 YpRg~~~~~~~~~d~~~v~~aaRlaaelGADIiK~~ytg~~e~F~~vv~-~~~vpVviaGG~k~~~~~~~l~~~~~ai~a 229 (265)
T COG1830 151 YPRGPAIKDEYHRDADLVGYAARLAAELGADIIKTKYTGDPESFRRVVA-ACGVPVVIAGGPKTETEREFLEMVTAAIEA 229 (265)
T ss_pred eccCCcccccccccHHHHHHHHHHHHHhcCCeEeecCCCChHHHHHHHH-hCCCCEEEeCCCCCCChHHHHHHHHHHHHc
Confidence 8865555 57777765 555 45 468999999 9999999988 45544444444322 12 345678
Q ss_pred CCccccccc
Q psy11975 643 GCAGGINAL 651 (786)
Q Consensus 643 GAdG~Isg~ 651 (786)
|+.|.+.|=
T Consensus 230 Ga~G~~~GR 238 (265)
T COG1830 230 GAMGVAVGR 238 (265)
T ss_pred cCcchhhhh
Confidence 999988874
No 41
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=95.64 E-value=0.4 Score=51.47 Aligned_cols=69 Identities=20% Similarity=0.303 Sum_probs=54.6
Q ss_pred CCeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEE--cCCCCCCC----CCCHHHHHHHHHHHHhcCCCCEEEEeCC
Q psy11975 514 QADLLKPQKHTTTRATIDLTQKAAKAGANAALI--LCPYYFQK----KMTEDLIYEHFISVADNSPIPVIIYNNT 582 (786)
Q Consensus 514 RVPVIaGVGa~ST~EAIELAr~Ae~aGADAVmV--iPPyY~kp----s~S~eeLv~YFraIAeAtdLPIiLYNiP 582 (786)
+.|+++.+.+.+.++.++.|+.++++|+|+|-+ ..|.+..- ..+.+.+.+.+++|-+++++||++==-|
T Consensus 89 ~~p~ivsi~g~~~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~~~~~~~~eiv~~vr~~~~~Pv~vKl~~ 163 (296)
T cd04740 89 GTPVIASIAGSTVEEFVEVAEKLADAGADAIELNISCPNVKGGGMAFGTDPEAVAEIVKAVKKATDVPVIVKLTP 163 (296)
T ss_pred CCcEEEEEecCCHHHHHHHHHHHHHcCCCEEEEECCCCCCCCCcccccCCHHHHHHHHHHHHhccCCCEEEEeCC
Confidence 469999999999999999999999999999976 44543321 1246778889999988889999976433
No 42
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=95.57 E-value=0.37 Score=52.05 Aligned_cols=69 Identities=20% Similarity=0.309 Sum_probs=53.7
Q ss_pred CCeEEEeCCCCCHHHHHHHHHHHHHcC-CCEEEEc--CCCC----CCCCCCHHHHHHHHHHHHhcCCCCEEEEeCC
Q psy11975 514 QADLLKPQKHTTTRATIDLTQKAAKAG-ANAALIL--CPYY----FQKKMTEDLIYEHFISVADNSPIPVIIYNNT 582 (786)
Q Consensus 514 RVPVIaGVGa~ST~EAIELAr~Ae~aG-ADAVmVi--PPyY----~kps~S~eeLv~YFraIAeAtdLPIiLYNiP 582 (786)
+.|||+.+++.+.++-++.|+.++++| +|+|-+- .|.. .....+.+-+.+..++|.+++++||++==.|
T Consensus 91 ~~p~i~si~g~~~~~~~~~a~~~~~aG~~D~iElN~~cP~~~~gg~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~~ 166 (301)
T PRK07259 91 DTPIIANVAGSTEEEYAEVAEKLSKAPNVDAIELNISCPNVKHGGMAFGTDPELAYEVVKAVKEVVKVPVIVKLTP 166 (301)
T ss_pred CCcEEEEeccCCHHHHHHHHHHHhccCCcCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 479999999999999999999999999 9999761 2221 1111247888999999998889999875444
No 43
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=95.26 E-value=0.66 Score=51.11 Aligned_cols=154 Identities=14% Similarity=0.083 Sum_probs=96.9
Q ss_pred CCeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEcC--CC--CCCCC------CCHHHHHHHHHHHHhcCCCCEEEEeCCC
Q psy11975 514 QADLLKPQKHTTTRATIDLTQKAAKAGANAALILC--PY--YFQKK------MTEDLIYEHFISVADNSPIPVIIYNNTF 583 (786)
Q Consensus 514 RVPVIaGVGa~ST~EAIELAr~Ae~aGADAVmViP--Py--Y~kps------~S~eeLv~YFraIAeAtdLPIiLYNiP~ 583 (786)
..|+++++.+.+.++.++.|+.+++.|+|+|=+-. |. ..+.+ .+.+-+.+-.++|.+++++||.+-=--+
T Consensus 64 ~~~~~vQl~g~~~~~~~~aa~~~~~~g~d~IdlN~gCP~~~v~~~g~Gs~ll~~p~~~~eiv~av~~a~d~pv~vKiR~G 143 (321)
T PRK10415 64 PGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDLVKSILTEVVNAVDVPVTLKIRTG 143 (321)
T ss_pred CCCEEEEEeCCCHHHHHHHHHHHHHCCCCEEEEeCCCCHHHHcCCCcccHHhcCHHHHHHHHHHHHHhcCCceEEEEEcc
Confidence 35788999999999999999999999999987543 32 01100 1477788888899888899988765322
Q ss_pred CcCCccCHHHHHHHH-h--CCCEE--EE------EeC-CHHHHHHHHhhcCCCCEEE-EeCCcc---hhhhhhc-cCCcc
Q psy11975 584 VTNIDISVDTLVKLA-H--HENIR--GV------KDT-DNIKLANMANQTKDLNFSV-FAGSAG---YLLSGLL-VGCAG 646 (786)
Q Consensus 584 ~TGv~LSpelL~rLA-e--iPNVV--GI------KDS-Dl~ri~~ll~~~~~~df~V-f~G~De---lLL~aL~-~GAdG 646 (786)
..........+++++ + ...|. |. +-. |+..+.++.+. . ++.| .+|.=. .+...+. .|++|
T Consensus 144 ~~~~~~~~~~~a~~le~~G~d~i~vh~rt~~~~~~G~a~~~~i~~ik~~-~--~iPVI~nGgI~s~~da~~~l~~~gadg 220 (321)
T PRK10415 144 WAPEHRNCVEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDSIRAVKQK-V--SIPVIANGDITDPLKARAVLDYTGADA 220 (321)
T ss_pred ccCCcchHHHHHHHHHHhCCCEEEEecCccccccCCCcChHHHHHHHHh-c--CCcEEEeCCCCCHHHHHHHHhccCCCE
Confidence 221111232333333 2 33332 11 111 67766666552 2 3443 333321 2345564 69999
Q ss_pred cccccccc-ccHHHHHHHHHHHcCC
Q psy11975 647 GINALSAV-LGGPICELYDLAKAGK 670 (786)
Q Consensus 647 ~Isg~aN~-~Pel~vaL~eA~~aGD 670 (786)
++.|-+.+ -|.++.++-+.+..|+
T Consensus 221 VmiGR~~l~nP~if~~~~~~~~~~~ 245 (321)
T PRK10415 221 LMIGRAAQGRPWIFREIQHYLDTGE 245 (321)
T ss_pred EEEChHhhcCChHHHHHHHHHhCCC
Confidence 99998876 7999988877776664
No 44
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=95.14 E-value=0.49 Score=50.54 Aligned_cols=144 Identities=17% Similarity=0.279 Sum_probs=89.7
Q ss_pred CCeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEc--CCCCCCC---CCCHHHHHHHHHHHHhcCCCCEEEEeCCCCcCCc
Q psy11975 514 QADLLKPQKHTTTRATIDLTQKAAKAGANAALIL--CPYYFQK---KMTEDLIYEHFISVADNSPIPVIIYNNTFVTNID 588 (786)
Q Consensus 514 RVPVIaGVGa~ST~EAIELAr~Ae~aGADAVmVi--PPyY~kp---s~S~eeLv~YFraIAeAtdLPIiLYNiP~~TGv~ 588 (786)
..|||+.+.+.+.++.++.++.+++.|+|+|-+- .|..... ..+.+.+.+..++|.+++++||++==-|.
T Consensus 98 ~~pvi~si~g~~~~~~~~~a~~~~~~G~d~ielN~~cP~~~~~~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~~~----- 172 (289)
T cd02810 98 GQPLIASVGGSSKEDYVELARKIERAGAKALELNLSCPNVGGGRQLGQDPEAVANLLKAVKAAVDIPLLVKLSPY----- 172 (289)
T ss_pred CCeEEEEeccCCHHHHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccCHHHHHHHHHHHHHccCCCEEEEeCCC-----
Confidence 5799999999999999999999999999999874 4443221 01367788888899888899988765442
Q ss_pred cCHHHHHHHH----h--CCCEEEE---E----e---------------C-------CHHHHHHHHhhcCCCCEEEE--eC
Q psy11975 589 ISVDTLVKLA----H--HENIRGV---K----D---------------T-------DNIKLANMANQTKDLNFSVF--AG 631 (786)
Q Consensus 589 LSpelL~rLA----e--iPNVVGI---K----D---------------S-------Dl~ri~~ll~~~~~~df~Vf--~G 631 (786)
++.+.+.+++ + ...|+-. . + + .+..+.++.+ ..+.++.|+ .|
T Consensus 173 ~~~~~~~~~a~~l~~~Gad~i~~~~~~~~~~~~~~~~~~~~~~~~~g~sg~~~~~~~~~~v~~i~~-~~~~~ipiia~GG 251 (289)
T cd02810 173 FDLEDIVELAKAAERAGADGLTAINTISGRVVDLKTVGPGPKRGTGGLSGAPIRPLALRWVARLAA-RLQLDIPIIGVGG 251 (289)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEEcccCccceecccCccccCCCCCccCcHHHHHHHHHHHHHHHH-hcCCCCCEEEECC
Confidence 3433333333 2 2333311 0 0 0 1222333333 222244444 33
Q ss_pred Cc--chhhhhhccCCccccccccccc--cHHHHHHH
Q psy11975 632 SA--GYLLSGLLVGCAGGINALSAVL--GGPICELY 663 (786)
Q Consensus 632 ~D--elLL~aL~~GAdG~Isg~aN~~--Pel~vaL~ 663 (786)
-. +.+...+.+|+++++.+.+.+. |+++.++.
T Consensus 252 I~~~~da~~~l~~GAd~V~vg~a~~~~GP~~~~~i~ 287 (289)
T cd02810 252 IDSGEDVLEMLMAGASAVQVATALMWDGPDVIRKIK 287 (289)
T ss_pred CCCHHHHHHHHHcCccHheEcHHHHhcCccHHHHHh
Confidence 32 2366778899999998887664 76666553
No 45
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=95.09 E-value=0.6 Score=51.46 Aligned_cols=146 Identities=14% Similarity=0.133 Sum_probs=86.9
Q ss_pred CCeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCC-CCCCC----CHHHHHHHHHHHHhcCCCCEEEEeCCCCcCCc
Q psy11975 514 QADLLKPQKHTTTRATIDLTQKAAKAGANAALILCPYY-FQKKM----TEDLIYEHFISVADNSPIPVIIYNNTFVTNID 588 (786)
Q Consensus 514 RVPVIaGVGa~ST~EAIELAr~Ae~aGADAVmViPPyY-~kps~----S~eeLv~YFraIAeAtdLPIiLYNiP~~TGv~ 588 (786)
+.|||+.+.+.+.++-.+.++.++++|||++-+--... ..+.. ..+.+.+..++|.+++++||++==-|..+
T Consensus 99 ~~pvi~si~g~~~~~~~~~a~~~~~~gad~iElN~s~~~~~~~~~g~~~~~~~~eiv~~v~~~~~iPv~vKl~p~~~--- 175 (325)
T cd04739 99 SIPVIASLNGVSAGGWVDYARQIEEAGADALELNIYALPTDPDISGAEVEQRYLDILRAVKSAVTIPVAVKLSPFFS--- 175 (325)
T ss_pred CCeEEEEeCCCCHHHHHHHHHHHHhcCCCEEEEeCCCCCCCCCcccchHHHHHHHHHHHHHhccCCCEEEEcCCCcc---
Confidence 47999999999999999999999999999997743211 11111 12446788888888889999988655322
Q ss_pred cCHHHHHHHH-h--CCCEEEEEeC-----CH---------------------HHHHHHHhhcCCCCEEEE-eC-Cc--ch
Q psy11975 589 ISVDTLVKLA-H--HENIRGVKDT-----DN---------------------IKLANMANQTKDLNFSVF-AG-SA--GY 635 (786)
Q Consensus 589 LSpelL~rLA-e--iPNVVGIKDS-----Dl---------------------~ri~~ll~~~~~~df~Vf-~G-~D--el 635 (786)
....+++.+ + ...|+-+=-. |+ ..+.++.+ . .++.|+ +| -. ..
T Consensus 176 -~~~~~a~~l~~~Gadgi~~~nt~~~~~id~~~~~~~~~~glSG~~~~~~al~~v~~v~~-~--~~ipIig~GGI~s~~D 251 (325)
T cd04739 176 -ALAHMAKQLDAAGADGLVLFNRFYQPDIDLETLEVVPNLLLSSPAEIRLPLRWIAILSG-R--VKASLAASGGVHDAED 251 (325)
T ss_pred -CHHHHHHHHHHcCCCeEEEEcCcCCCCccccccceecCCCcCCccchhHHHHHHHHHHc-c--cCCCEEEECCCCCHHH
Confidence 233444433 2 2222211100 21 11122222 1 234443 22 22 23
Q ss_pred hhhhhccCCccccccccccc--cHHHHHHHHHH
Q psy11975 636 LLSGLLVGCAGGINALSAVL--GGPICELYDLA 666 (786)
Q Consensus 636 LL~aL~~GAdG~Isg~aN~~--Pel~vaL~eA~ 666 (786)
.+..+.+||+++..+++++. |..+.+|.+.+
T Consensus 252 a~e~l~aGA~~Vqv~ta~~~~gp~~~~~i~~~L 284 (325)
T cd04739 252 VVKYLLAGADVVMTTSALLRHGPDYIGTLLAGL 284 (325)
T ss_pred HHHHHHcCCCeeEEehhhhhcCchHHHHHHHHH
Confidence 66778899999999988765 66555555443
No 46
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=95.09 E-value=0.44 Score=49.40 Aligned_cols=123 Identities=15% Similarity=0.180 Sum_probs=78.1
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHh---cCCCCEEEEeCCCCcCCc----cCHHHHHH
Q psy11975 524 TTTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVAD---NSPIPVIIYNNTFVTNID----ISVDTLVK 596 (786)
Q Consensus 524 ~ST~EAIELAr~Ae~aGADAVmViPPyY~kps~S~eeLv~YFraIAe---AtdLPIiLYNiP~~TGv~----LSpelL~r 596 (786)
..+..-+..++.|.++|||++.++... +.. ..+++.+..+++.+ ..++|+++=... .|.. ++.+.+.+
T Consensus 73 ~~~~~~~~~v~~a~~~Ga~~v~~~~~~--~~~-~~~~~~~~i~~v~~~~~~~g~~~iie~~~--~g~~~~~~~~~~~i~~ 147 (235)
T cd00958 73 DNDKVLVASVEDAVRLGADAVGVTVYV--GSE-EEREMLEELARVAAEAHKYGLPLIAWMYP--RGPAVKNEKDPDLIAY 147 (235)
T ss_pred CCchhhhcCHHHHHHCCCCEEEEEEec--CCc-hHHHHHHHHHHHHHHHHHcCCCEEEEEec--cCCcccCccCHHHHHH
Confidence 455666777899999999999776432 221 25666666666665 458999983322 2333 45667666
Q ss_pred H---H-hC-CCEEEEEeC-CHHHHHHHHhhcCCCCEEEEeCCc--------chhhhhhccCCcccccccc
Q psy11975 597 L---A-HH-ENIRGVKDT-DNIKLANMANQTKDLNFSVFAGSA--------GYLLSGLLVGCAGGINALS 652 (786)
Q Consensus 597 L---A-ei-PNVVGIKDS-Dl~ri~~ll~~~~~~df~Vf~G~D--------elLL~aL~~GAdG~Isg~a 652 (786)
+ + +. ..++++..+ +++.+.++.+. .+-.+.+..|.. +.+-..+..|++|+..|.+
T Consensus 148 ~~~~a~~~GaD~Ik~~~~~~~~~~~~i~~~-~~~pvv~~GG~~~~~~~~~l~~~~~~~~~Ga~gv~vg~~ 216 (235)
T cd00958 148 AARIGAELGADIVKTKYTGDAESFKEVVEG-CPVPVVIAGGPKKDSEEEFLKMVYDAMEAGAAGVAVGRN 216 (235)
T ss_pred HHHHHHHHCCCEEEecCCCCHHHHHHHHhc-CCCCEEEeCCCCCCCHHHHHHHHHHHHHcCCcEEEechh
Confidence 3 3 32 567777766 88888888763 333453334422 2245668899999877754
No 47
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=94.94 E-value=0.59 Score=50.72 Aligned_cols=146 Identities=16% Similarity=0.147 Sum_probs=94.0
Q ss_pred CCeEEEeCCCC-CHHHHHHHHHHHHHcCCCEEEE--cCCCC-C-C-----CCCCHHHHHHHHHHHHhcCCCCEEEEeCCC
Q psy11975 514 QADLLKPQKHT-TTRATIDLTQKAAKAGANAALI--LCPYY-F-Q-----KKMTEDLIYEHFISVADNSPIPVIIYNNTF 583 (786)
Q Consensus 514 RVPVIaGVGa~-ST~EAIELAr~Ae~aGADAVmV--iPPyY-~-k-----ps~S~eeLv~YFraIAeAtdLPIiLYNiP~ 583 (786)
..|+|+.+.+. +.++-++.|+.+++.|||++-+ ..|.. . + ...+.+.+.+..++|.+++++||++==-|.
T Consensus 99 ~~p~i~si~G~~~~~~~~~~a~~~~~~gad~ielN~sCP~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~Pv~vKl~~~ 178 (299)
T cd02940 99 DKILIASIMCEYNKEDWTELAKLVEEAGADALELNFSCPHGMPERGMGAAVGQDPELVEEICRWVREAVKIPVIAKLTPN 178 (299)
T ss_pred CCeEEEEecCCCCHHHHHHHHHHHHhcCCCEEEEECCCCCCCCCCCCchhhccCHHHHHHHHHHHHHhcCCCeEEECCCC
Confidence 46899999887 9999999999999999999987 23332 1 0 002477888999999888899999875443
Q ss_pred CcCCccCHHHHHHHH-h--CCCEE---------EE-------------E-----eC---C----HHHHHHHHhhcCCCCE
Q psy11975 584 VTNIDISVDTLVKLA-H--HENIR---------GV-------------K-----DT---D----NIKLANMANQTKDLNF 626 (786)
Q Consensus 584 ~TGv~LSpelL~rLA-e--iPNVV---------GI-------------K-----DS---D----l~ri~~ll~~~~~~df 626 (786)
.+ ....+++.+ + ...|+ ++ + .+ + +..+.++.+ ..++++
T Consensus 179 ~~----~~~~~a~~~~~~Gadgi~~~Nt~~~~~~id~~~~~~~~~~~~~~~~gg~sG~a~~p~~l~~v~~~~~-~~~~~i 253 (299)
T cd02940 179 IT----DIREIARAAKEGGADGVSAINTVNSLMGVDLDGTPPAPGVEGKTTYGGYSGPAVKPIALRAVSQIAR-APEPGL 253 (299)
T ss_pred ch----hHHHHHHHHHHcCCCEEEEecccccccccccccCCccccccCCCCcCcccCCCcchHHHHHHHHHHH-hcCCCC
Confidence 21 234454444 2 34444 11 0 00 1 344555544 233455
Q ss_pred EEEeCCc----chhhhhhccCCccccccccccc--cHHHHHHHH
Q psy11975 627 SVFAGSA----GYLLSGLLVGCAGGINALSAVL--GGPICELYD 664 (786)
Q Consensus 627 ~Vf~G~D----elLL~aL~~GAdG~Isg~aN~~--Pel~vaL~e 664 (786)
.|+.-.+ +..+..+.+||++++.+.+.+. |..+.+|.+
T Consensus 254 pIig~GGI~~~~da~~~l~aGA~~V~i~ta~~~~g~~~~~~i~~ 297 (299)
T cd02940 254 PISGIGGIESWEDAAEFLLLGASVVQVCTAVMNQGFTIVDDMCT 297 (299)
T ss_pred cEEEECCCCCHHHHHHHHHcCCChheEceeecccCCcHHHHHhh
Confidence 5543332 2367788899999999998876 676666654
No 48
>PRK07226 fructose-bisphosphate aldolase; Provisional
Probab=94.93 E-value=0.38 Score=51.40 Aligned_cols=119 Identities=16% Similarity=0.164 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHhcC---CCCEEEEeCCCCcCCc----cCHHHHHHHH-
Q psy11975 527 RATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNS---PIPVIIYNNTFVTNID----ISVDTLVKLA- 598 (786)
Q Consensus 527 ~EAIELAr~Ae~aGADAVmViPPyY~kps~S~eeLv~YFraIAeAt---dLPIiLYNiP~~TGv~----LSpelL~rLA- 598 (786)
..-+..++.|.+.|||++.+...+ .. ...+++.+..++|.+.+ ++|+++-..|. |.. ++.+.+...+
T Consensus 93 ~~~~~~ve~A~~~Gad~v~~~~~~--g~-~~~~~~~~~~~~v~~~~~~~g~pl~vi~~~~--g~~~e~~~~~~~i~~a~~ 167 (267)
T PRK07226 93 KVLVGTVEEAIKLGADAVSVHVNV--GS-ETEAEMLEDLGEVAEECEEWGMPLLAMMYPR--GPGIKNEYDPEVVAHAAR 167 (267)
T ss_pred ceeeecHHHHHHcCCCEEEEEEec--CC-hhHHHHHHHHHHHHHHHHHcCCcEEEEEecC--CCccCCCccHHHHHHHHH
Confidence 445667889999999999888533 22 12566777787777665 79998854332 222 3555554443
Q ss_pred --hCCCEEEEEeC---CHHHHHHHHhhcCCCCEEEEeCCc--c------hhhhhhccCCccccccc
Q psy11975 599 --HHENIRGVKDT---DNIKLANMANQTKDLNFSVFAGSA--G------YLLSGLLVGCAGGINAL 651 (786)
Q Consensus 599 --eiPNVVGIKDS---Dl~ri~~ll~~~~~~df~Vf~G~D--e------lLL~aL~~GAdG~Isg~ 651 (786)
..-..-.||.+ ++..+.+++. ...-.+....|-. . ++..++.+|++|+..+-
T Consensus 168 ~a~e~GAD~vKt~~~~~~~~l~~~~~-~~~ipV~a~GGi~~~~~~~~l~~v~~~~~aGA~Gis~gr 232 (267)
T PRK07226 168 VAAELGADIVKTNYTGDPESFREVVE-GCPVPVVIAGGPKTDTDREFLEMVRDAMEAGAAGVAVGR 232 (267)
T ss_pred HHHHHCCCEEeeCCCCCHHHHHHHHH-hCCCCEEEEeCCCCCCHHHHHHHHHHHHHcCCcEEehhh
Confidence 22355666887 6777877775 2334576677766 3 23455689999776654
No 49
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=94.72 E-value=0.75 Score=52.15 Aligned_cols=149 Identities=13% Similarity=0.097 Sum_probs=94.2
Q ss_pred CCeEEEeCCCC-CHHHHHHHHHHHHHcCCCEEEEc--CCCCC-C------CCCCHHHHHHHHHHHHhcCCCCEEEEeCCC
Q psy11975 514 QADLLKPQKHT-TTRATIDLTQKAAKAGANAALIL--CPYYF-Q------KKMTEDLIYEHFISVADNSPIPVIIYNNTF 583 (786)
Q Consensus 514 RVPVIaGVGa~-ST~EAIELAr~Ae~aGADAVmVi--PPyY~-k------ps~S~eeLv~YFraIAeAtdLPIiLYNiP~ 583 (786)
..|||+++.+. +.++-++.++.++++|||++-+= .|... . ...+.+.+.+..++|.+.+++||++==-|.
T Consensus 99 ~~p~i~si~g~~~~~~~~~~a~~~~~~g~d~ielN~scP~~~~~~~~g~~~~~~~~~~~~i~~~v~~~~~~Pv~vKl~p~ 178 (420)
T PRK08318 99 DRALIASIMVECNEEEWKEIAPLVEETGADGIELNFGCPHGMSERGMGSAVGQVPELVEMYTRWVKRGSRLPVIVKLTPN 178 (420)
T ss_pred CceEEEEeccCCCHHHHHHHHHHHHhcCCCEEEEeCCCCCCccccCCcccccCCHHHHHHHHHHHHhccCCcEEEEcCCC
Confidence 36899999988 88999999999999999999763 23311 0 012578888999999888899999876553
Q ss_pred CcCCccCHHHHHHHHh---CCCEEE--------------------E--E-----eC--C-----HHHHHHHHhhcCCCCE
Q psy11975 584 VTNIDISVDTLVKLAH---HENIRG--------------------V--K-----DT--D-----NIKLANMANQTKDLNF 626 (786)
Q Consensus 584 ~TGv~LSpelL~rLAe---iPNVVG--------------------I--K-----DS--D-----l~ri~~ll~~~~~~df 626 (786)
.+ ....++++++ ...|+. + + .+ . +..+.++.++...+++
T Consensus 179 ~~----~~~~~a~~~~~~Gadgi~~~Nt~~~~~~id~~~~~~~p~~~~~~~~gg~SG~a~~p~~l~~v~~~~~~~~~~~i 254 (420)
T PRK08318 179 IT----DIREPARAAKRGGADAVSLINTINSITGVDLDRMIPMPIVNGKSSHGGYCGPAVKPIALNMVAEIARDPETRGL 254 (420)
T ss_pred cc----cHHHHHHHHHHCCCCEEEEecccCccccccccccCCCceecCCCCcccccchhhhHHHHHHHHHHHhccccCCC
Confidence 32 2344555442 233331 1 1 11 1 2333333331111245
Q ss_pred EEEeCCc----chhhhhhccCCccccccccccc--cHHHHHHHHHH
Q psy11975 627 SVFAGSA----GYLLSGLLVGCAGGINALSAVL--GGPICELYDLA 666 (786)
Q Consensus 627 ~Vf~G~D----elLL~aL~~GAdG~Isg~aN~~--Pel~vaL~eA~ 666 (786)
.|+.-.+ +..++.+.+||++++.+++.++ |..+.+|.+-+
T Consensus 255 pIig~GGI~s~~da~e~i~aGA~~Vqi~ta~~~~gp~ii~~I~~~L 300 (420)
T PRK08318 255 PISGIGGIETWRDAAEFILLGAGTVQVCTAAMQYGFRIVEDMISGL 300 (420)
T ss_pred CEEeecCcCCHHHHHHHHHhCCChheeeeeeccCCchhHHHHHHHH
Confidence 5543222 2366778899999999999887 77777766654
No 50
>PRK09250 fructose-bisphosphate aldolase; Provisional
Probab=94.11 E-value=0.89 Score=50.96 Aligned_cols=102 Identities=16% Similarity=0.148 Sum_probs=68.1
Q ss_pred cCCCCeEEEeCCCCC--------HHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHhcC---CCCEEEE
Q psy11975 511 REWQADLLKPQKHTT--------TRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNS---PIPVIIY 579 (786)
Q Consensus 511 vaGRVPVIaGVGa~S--------T~EAIELAr~Ae~aGADAVmViPPyY~kps~S~eeLv~YFraIAeAt---dLPIiLY 579 (786)
-.+++|+|+.+.+.+ ......-.+.|.++|||||.+.- |+... .+.+.++-+.+|++.+ ++|+++.
T Consensus 122 ~~~~iplIlkln~~t~l~~~~~~~~~l~~sVedAlrLGAdAV~~tv--y~Gs~-~E~~ml~~l~~i~~ea~~~GlPlv~~ 198 (348)
T PRK09250 122 YAHKIPFILKLNHNELLSYPNTYDQALTASVEDALRLGAVAVGATI--YFGSE-ESRRQIEEISEAFEEAHELGLATVLW 198 (348)
T ss_pred ccCCCCEEEEeCCCCCCCCCCCCcccceecHHHHHHCCCCEEEEEE--ecCCH-HHHHHHHHHHHHHHHHHHhCCCEEEE
Confidence 345789999877631 22334447889999999999984 44332 3666777788887776 7999997
Q ss_pred eCCCCcCCcc--------CHHHH---HHHH-hC-CCEEEEEeC-CHHHHHHH
Q psy11975 580 NNTFVTNIDI--------SVDTL---VKLA-HH-ENIRGVKDT-DNIKLANM 617 (786)
Q Consensus 580 NiP~~TGv~L--------SpelL---~rLA-ei-PNVVGIKDS-Dl~ri~~l 617 (786)
-+|. |..+ .++.+ .+++ ++ ..|+=+|++ |...+.++
T Consensus 199 ~YpR--G~~i~~~~d~~~~~d~Ia~AaRiaaELGADIVKv~yp~~~~~f~~v 248 (348)
T PRK09250 199 SYLR--NSAFKKDGDYHTAADLTGQANHLAATIGADIIKQKLPTNNGGYKAI 248 (348)
T ss_pred eccc--CcccCCcccccccHHHHHHHHHHHHHHcCCEEEecCCCChhhHHHh
Confidence 7774 3222 24454 4444 45 579999998 76665555
No 51
>TIGR03326 rubisco_III ribulose bisphosphate carboxylase, type III. Members of this protein family are the archaeal, single chain, type III form of ribulose bisphosphate carboxylase, or RuBisCO. Members act is a three-step pathway for conversion of the sugar moiety of AMP to two molecules of 3-phosphoglycerate. Many of these species use ADP-dependent sugar kinases, which form AMP, for glycolysis.
Probab=94.05 E-value=0.96 Score=51.80 Aligned_cols=152 Identities=14% Similarity=0.060 Sum_probs=81.3
Q ss_pred ccCCCCeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHhcCCCCEEEEeCCCCcC---
Q psy11975 510 EREWQADLLKPQKHTTTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTN--- 586 (786)
Q Consensus 510 evaGRVPVIaGVGa~ST~EAIELAr~Ae~aGADAVmViPPyY~kps~S~eeLv~YFraIAeAtdLPIiLYNiP~~TG--- 586 (786)
+++.+.-..+++++. +++.++.++.|+++|+.++|+-+-.+ ..+ .++..++-+...++||..+-. ..|
T Consensus 208 eTG~~~~ya~NiT~~-~~em~~ra~~~~~~G~~~~mv~~~~~-G~~-----~l~~l~~~~~~~~l~ih~Hra--~~ga~~ 278 (412)
T TIGR03326 208 ETGERKEYLANITAP-VREMERRAELVADLGGQYVMVDVVVC-GWS-----ALQYIRELTEDLGLAIHAHRA--MHAAFT 278 (412)
T ss_pred HhCCcceEEEEecCC-HHHHHHHHHHHHHhCCCeEEEEeecc-chH-----HHHHHHHhhccCCeEEEEcCC--cccccc
Confidence 344455557799985 89999999999999999999986443 222 244444444455777776432 222
Q ss_pred ----CccCHHHHHHHH-----h---CCCEEEEEeC-CH---HHHHHHHhhcC---CCCEEEEeCCcch-hhh-hh-ccCC
Q psy11975 587 ----IDISVDTLVKLA-----H---HENIRGVKDT-DN---IKLANMANQTK---DLNFSVFAGSAGY-LLS-GL-LVGC 644 (786)
Q Consensus 587 ----v~LSpelL~rLA-----e---iPNVVGIKDS-Dl---~ri~~ll~~~~---~~df~Vf~G~Del-LL~-aL-~~GA 644 (786)
..++..++.+|. + +|++-+=|.. +. .++.+.+++.. .+-|-|..|.-.. .++ .+ ..|-
T Consensus 279 ~~~~~Gis~~vl~kl~RLaGaD~~~~~t~~~Gk~~~~~~~~~~~~~~~~~~~~~~k~~~Pv~sGG~~~~~vp~~~~~~G~ 358 (412)
T TIGR03326 279 RNPKHGISMFALAKLYRLIGVDQLHTGTAGVGKLEGGKEDTKQINDFLRQKWHHIKPVFPVSSGGLHPGLVPPLIDALGK 358 (412)
T ss_pred cCCCCcCcHHHHHHHHHHcCCCeeeeCCCccCCCCCCHHHHHHHHHHHhCcccCCCCceEecCCCCChhHHHHHHHhcCC
Confidence 234555555554 2 3666233555 33 33433333111 2346677665432 222 22 2444
Q ss_pred ccccccccccc--c-------HHHHHHHHHHHcCC
Q psy11975 645 AGGINALSAVL--G-------GPICELYDLAKAGK 670 (786)
Q Consensus 645 dG~Isg~aN~~--P-------el~vaL~eA~~aGD 670 (786)
|=++...+.++ | +.+++-|+++.+|.
T Consensus 359 Dvil~~GGGi~gHp~G~~aGa~A~rqA~ea~~~G~ 393 (412)
T TIGR03326 359 DLVIQAGGGVHGHPDGPRAGAKALRAAIDAIIEGI 393 (412)
T ss_pred ceEEecCCccccCCCChhhHHHHHHHHHHHHHcCC
Confidence 43333323332 1 35566666666554
No 52
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=93.39 E-value=0.92 Score=50.71 Aligned_cols=116 Identities=16% Similarity=0.259 Sum_probs=71.7
Q ss_pred HHHHHHcCCCEEEEcCCCCCCCCCC---HHHHHHHHHHHHhcC---CCCEEE----EeCCCCcCCc-----cCHHHHHHH
Q psy11975 533 TQKAAKAGANAALILCPYYFQKKMT---EDLIYEHFISVADNS---PIPVII----YNNTFVTNID-----ISVDTLVKL 597 (786)
Q Consensus 533 Ar~Ae~aGADAVmViPPyY~kps~S---~eeLv~YFraIAeAt---dLPIiL----YNiP~~TGv~-----LSpelL~rL 597 (786)
+++|.++|||||-++- |+.+... ++...++.++|.+++ ++|+++ |......... ..++.+...
T Consensus 112 ve~a~~~GAdAVk~lv--~~~~d~~~~~~~~~~~~l~rv~~ec~~~giPlllE~l~y~~~~~~~~~~~~a~~~p~~V~~a 189 (340)
T PRK12858 112 VRRIKEAGADAVKLLL--YYRPDEDDAINDRKHAFVERVGAECRANDIPFFLEPLTYDGKGSDKKAEEFAKVKPEKVIKT 189 (340)
T ss_pred HHHHHHcCCCEEEEEE--EeCCCcchHHHHHHHHHHHHHHHHHHHcCCceEEEEeccCCCccccccccccccCHHHHHHH
Confidence 6889999999999985 4455412 346677888888776 799887 3322111111 456777666
Q ss_pred HhC-----CCEEEEEeC---CH-------------------HHHHHHHhhcCCCCEEEEeCCcc--hhh----hhhccCC
Q psy11975 598 AHH-----ENIRGVKDT---DN-------------------IKLANMANQTKDLNFSVFAGSAG--YLL----SGLLVGC 644 (786)
Q Consensus 598 Aei-----PNVVGIKDS---Dl-------------------~ri~~ll~~~~~~df~Vf~G~De--lLL----~aL~~GA 644 (786)
+++ =++-=+|-. |+ ..+.++.+ ..+-.+.|+.|.-. .++ .++..|+
T Consensus 190 ~r~~~~~elGaDvlKve~p~~~~~veg~~~~~~~~~~~~~~~~f~~~~~-a~~~P~vvlsgG~~~~~f~~~l~~A~~aGa 268 (340)
T PRK12858 190 MEEFSKPRYGVDVLKVEVPVDMKFVEGFDGFEEAYTQEEAFKLFREQSD-ATDLPFIFLSAGVSPELFRRTLEFACEAGA 268 (340)
T ss_pred HHHHhhhccCCeEEEeeCCCCcccccccccccccccHHHHHHHHHHHHh-hCCCCEEEECCCCCHHHHHHHHHHHHHcCC
Confidence 531 133345554 44 55666665 34556777777642 233 4567888
Q ss_pred --ccccccc
Q psy11975 645 --AGGINAL 651 (786)
Q Consensus 645 --dG~Isg~ 651 (786)
.|++.|=
T Consensus 269 ~f~Gvl~GR 277 (340)
T PRK12858 269 DFSGVLCGR 277 (340)
T ss_pred CccchhhhH
Confidence 8888884
No 53
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=93.31 E-value=0.97 Score=48.42 Aligned_cols=122 Identities=14% Similarity=0.196 Sum_probs=78.2
Q ss_pred CCCCeEEEeCCCCCHH--------HHHHHHHHHHHcCCCEEEEcC-CCCCCCCCCHHHHHHHHHHHHhcCCCCEEEEeCC
Q psy11975 512 EWQADLLKPQKHTTTR--------ATIDLTQKAAKAGANAALILC-PYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNT 582 (786)
Q Consensus 512 aGRVPVIaGVGa~ST~--------EAIELAr~Ae~aGADAVmViP-PyY~kps~S~eeLv~YFraIAeAtdLPIiLYNiP 582 (786)
.++++||+-+-..+.. +..++|+.+++.||+|+.++. |.||.-+ +++.+.|.+++++||+..|+
T Consensus 47 ~~~~~vIaeik~~sps~g~i~~~~~~~~~A~~~~~~GA~aisvlte~~~f~g~------~~~l~~v~~~v~iPvl~kdf- 119 (260)
T PRK00278 47 AGKPAVIAEVKKASPSKGVIREDFDPVEIAKAYEAGGAACLSVLTDERFFQGS------LEYLRAARAAVSLPVLRKDF- 119 (260)
T ss_pred cCCCeEEEEeeCCCCCCCccCCCCCHHHHHHHHHhCCCeEEEEecccccCCCC------HHHHHHHHHhcCCCEEeeee-
Confidence 3568999977554333 568999999999999998855 6777654 68888899889999998663
Q ss_pred CCcCCccCHHHHHHHHhC-CCEEEEEeC--CHHHHHHHHhhcCCCCEEEEeC-Cc-chhhhhhccCCc
Q psy11975 583 FVTNIDISVDTLVKLAHH-ENIRGVKDT--DNIKLANMANQTKDLNFSVFAG-SA-GYLLSGLLVGCA 645 (786)
Q Consensus 583 ~~TGv~LSpelL~rLAei-PNVVGIKDS--Dl~ri~~ll~~~~~~df~Vf~G-~D-elLL~aL~~GAd 645 (786)
-+++-.+.+.... -.++-+=.+ +...+.++++....-+..++.- .+ +-+..++.+|++
T Consensus 120 -----i~~~~qi~~a~~~GAD~VlLi~~~l~~~~l~~li~~a~~lGl~~lvevh~~~E~~~A~~~gad 182 (260)
T PRK00278 120 -----IIDPYQIYEARAAGADAILLIVAALDDEQLKELLDYAHSLGLDVLVEVHDEEELERALKLGAP 182 (260)
T ss_pred -----cCCHHHHHHHHHcCCCEEEEEeccCCHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHcCCC
Confidence 3455555555544 345555555 4455555554322223443322 12 223456677877
No 54
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=93.27 E-value=2.2 Score=43.63 Aligned_cols=147 Identities=17% Similarity=0.159 Sum_probs=87.7
Q ss_pred CCCCeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEc--CCCCCCCC--------CCHHHHHHHHHHHHhcCCCCEEEEeC
Q psy11975 512 EWQADLLKPQKHTTTRATIDLTQKAAKAGANAALIL--CPYYFQKK--------MTEDLIYEHFISVADNSPIPVIIYNN 581 (786)
Q Consensus 512 aGRVPVIaGVGa~ST~EAIELAr~Ae~aGADAVmVi--PPyY~kps--------~S~eeLv~YFraIAeAtdLPIiLYNi 581 (786)
..+.|+++.+++.+.++..+.|+.++++|+|+|-+- .|....-. -..+-+.+..++|-+++++||.+--.
T Consensus 52 ~~~~p~~~qi~g~~~~~~~~aa~~~~~aG~d~ieln~g~p~~~~~~~~~G~~l~~~~~~~~eii~~v~~~~~~~v~vk~r 131 (231)
T cd02801 52 PEERPLIVQLGGSDPETLAEAAKIVEELGADGIDLNMGCPSPKVTKGGAGAALLKDPELVAEIVRAVREAVPIPVTVKIR 131 (231)
T ss_pred ccCCCEEEEEcCCCHHHHHHHHHHHHhcCCCEEEEeCCCCHHHHhCCCeeehhcCCHHHHHHHHHHHHHhcCCCEEEEEe
Confidence 457899999999999999999999999999999764 23321100 13566778888888777888887432
Q ss_pred CCCcCCccCHHHHHHHHhCCCEEEE-------E--e--C-CHHHHHHHHhhcCCCCEEEEe-CCc---chhhhhhcc-CC
Q psy11975 582 TFVTNIDISVDTLVKLAHHENIRGV-------K--D--T-DNIKLANMANQTKDLNFSVFA-GSA---GYLLSGLLV-GC 644 (786)
Q Consensus 582 P~~TGv~LSpelL~rLAeiPNVVGI-------K--D--S-Dl~ri~~ll~~~~~~df~Vf~-G~D---elLL~aL~~-GA 644 (786)
.+.....-..+.+..|.+. ++-+| . . . +++.+.++.+ . .++.|+. |.= +.+...+.. |+
T Consensus 132 ~~~~~~~~~~~~~~~l~~~-Gvd~i~v~~~~~~~~~~~~~~~~~~~~i~~-~--~~ipvi~~Ggi~~~~d~~~~l~~~ga 207 (231)
T cd02801 132 LGWDDEEETLELAKALEDA-GASALTVHGRTREQRYSGPADWDYIAEIKE-A--VSIPVIANGDIFSLEDALRCLEQTGV 207 (231)
T ss_pred eccCCchHHHHHHHHHHHh-CCCEEEECCCCHHHcCCCCCCHHHHHHHHh-C--CCCeEEEeCCCCCHHHHHHHHHhcCC
Confidence 2211100111223333333 23334 1 1 1 6666666554 2 3444433 321 235556666 89
Q ss_pred cccccccccc-ccHHHHHH
Q psy11975 645 AGGINALSAV-LGGPICEL 662 (786)
Q Consensus 645 dG~Isg~aN~-~Pel~vaL 662 (786)
+|++.|-+.+ -|.++.++
T Consensus 208 d~V~igr~~l~~P~~~~~~ 226 (231)
T cd02801 208 DGVMIGRGALGNPWLFREI 226 (231)
T ss_pred CEEEEcHHhHhCCHHHHhh
Confidence 9999987654 35555443
No 55
>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=92.79 E-value=4.1 Score=44.37 Aligned_cols=147 Identities=11% Similarity=0.030 Sum_probs=94.1
Q ss_pred CCeEEEeCCCCCHHHHHHHHHHHHHc---CCCEEEE--cCCCCCC---CCCCHHHHHHHHHHHHhcCCCCEEEEeCCCCc
Q psy11975 514 QADLLKPQKHTTTRATIDLTQKAAKA---GANAALI--LCPYYFQ---KKMTEDLIYEHFISVADNSPIPVIIYNNTFVT 585 (786)
Q Consensus 514 RVPVIaGVGa~ST~EAIELAr~Ae~a---GADAVmV--iPPyY~k---ps~S~eeLv~YFraIAeAtdLPIiLYNiP~~T 585 (786)
..|||+.+.+. .++-++.++..++. |||++-+ ..|.... ...+.+.+.+..++|.+++++||++==-|..
T Consensus 91 ~~pvivsi~g~-~~~~~~~~~~~~~~~~~~ad~ielN~sCPn~~~~~~~~~~~~~~~~i~~~v~~~~~iPv~vKl~p~~- 168 (294)
T cd04741 91 AKPFFISVTGS-AEDIAAMYKKIAAHQKQFPLAMELNLSCPNVPGKPPPAYDFDATLEYLTAVKAAYSIPVGVKTPPYT- 168 (294)
T ss_pred CCeEEEECCCC-HHHHHHHHHHHHhhccccccEEEEECCCCCCCCcccccCCHHHHHHHHHHHHHhcCCCEEEEeCCCC-
Confidence 46999999998 99999999999886 7999876 2343211 1124788999999999999999998766642
Q ss_pred CCccCHHHHHHHHh----C----CCEEE---------EE-----------eC----C--------HHHHHHHHhhcCCCC
Q psy11975 586 NIDISVDTLVKLAH----H----ENIRG---------VK-----------DT----D--------NIKLANMANQTKDLN 625 (786)
Q Consensus 586 Gv~LSpelL~rLAe----i----PNVVG---------IK-----------DS----D--------l~ri~~ll~~~~~~d 625 (786)
+.+.+.++++ . ..|+. |. .. . +..+.++.+ ..+.+
T Consensus 169 ----~~~~~~~~a~~l~~~~~G~~gi~~~Nt~~~~~~id~~~~~~~~~~~~~~gG~SG~~i~~~al~~v~~~~~-~~~~~ 243 (294)
T cd04741 169 ----DPAQFDTLAEALNAFACPISFITATNTLGNGLVLDPERETVVLKPKTGFGGLAGAYLHPLALGNVRTFRR-LLPSE 243 (294)
T ss_pred ----CHHHHHHHHHHHhccccCCcEEEEEccCCccccccCCCCCcccCCCCCCCCcCchhhHHHHHHHHHHHHH-hcCCC
Confidence 3344444442 2 11331 11 10 0 122233322 23334
Q ss_pred EEEEeCCc----chhhhhhccCCccccccccccc--cHHHHHHHHHHH
Q psy11975 626 FSVFAGSA----GYLLSGLLVGCAGGINALSAVL--GGPICELYDLAK 667 (786)
Q Consensus 626 f~Vf~G~D----elLL~aL~~GAdG~Isg~aN~~--Pel~vaL~eA~~ 667 (786)
+.|+.-.+ +..++.+.+||++++.+++.++ |.++.+|.+.++
T Consensus 244 ipIig~GGI~s~~da~e~l~aGA~~Vqv~ta~~~~gp~~~~~i~~~L~ 291 (294)
T cd04741 244 IQIIGVGGVLDGRGAFRMRLAGASAVQVGTALGKEGPKVFARIEKELE 291 (294)
T ss_pred CCEEEeCCCCCHHHHHHHHHcCCCceeEchhhhhcCchHHHHHHHHHH
Confidence 55433222 2367788899999999999885 888888876654
No 56
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=92.77 E-value=1.1 Score=49.55 Aligned_cols=152 Identities=13% Similarity=0.083 Sum_probs=91.6
Q ss_pred CCeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEcC--CCCC--CC--C----CCHHHHHHHHHHHHhcCCCCEEEEeCCC
Q psy11975 514 QADLLKPQKHTTTRATIDLTQKAAKAGANAALILC--PYYF--QK--K----MTEDLIYEHFISVADNSPIPVIIYNNTF 583 (786)
Q Consensus 514 RVPVIaGVGa~ST~EAIELAr~Ae~aGADAVmViP--PyY~--kp--s----~S~eeLv~YFraIAeAtdLPIiLYNiP~ 583 (786)
..|+++++.+.+.++.++.|+.++++|+|+|=+-. |.-. +- + ...+-+.+..++|-+++++||.+.--.+
T Consensus 64 e~p~~vQl~g~~p~~~~~aA~~~~~~g~d~IdlN~gCP~~~v~~~~~Gs~L~~~p~~~~eiv~avr~~v~~pVsvKiR~g 143 (333)
T PRK11815 64 EHPVALQLGGSDPADLAEAAKLAEDWGYDEINLNVGCPSDRVQNGRFGACLMAEPELVADCVKAMKDAVSIPVTVKHRIG 143 (333)
T ss_pred CCcEEEEEeCCCHHHHHHHHHHHHhcCCCEEEEcCCCCHHHccCCCeeeHHhcCHHHHHHHHHHHHHHcCCceEEEEEee
Confidence 45899999999999999999999999999996543 3221 10 0 1466778888888888899999875333
Q ss_pred CcCCccCH----HHHHHHHh--CCCEE---------EEE--e-----C-CHHHHHHHHhhcCCCCEEEE-eCCcch---h
Q psy11975 584 VTNIDISV----DTLVKLAH--HENIR---------GVK--D-----T-DNIKLANMANQTKDLNFSVF-AGSAGY---L 636 (786)
Q Consensus 584 ~TGv~LSp----elL~rLAe--iPNVV---------GIK--D-----S-Dl~ri~~ll~~~~~~df~Vf-~G~Del---L 636 (786)
..+. -+. +.+..|.+ ...|. |.. . . ++..+.++.+. -.++.|+ +|.=.. +
T Consensus 144 ~~~~-~t~~~~~~~~~~l~~aG~d~i~vh~Rt~~~~g~~~~~~~~~~~~~~~~i~~v~~~--~~~iPVI~nGgI~s~eda 220 (333)
T PRK11815 144 IDDQ-DSYEFLCDFVDTVAEAGCDTFIVHARKAWLKGLSPKENREIPPLDYDRVYRLKRD--FPHLTIEINGGIKTLEEA 220 (333)
T ss_pred eCCC-cCHHHHHHHHHHHHHhCCCEEEEcCCchhhcCCCccccccCCCcCHHHHHHHHHh--CCCCeEEEECCcCCHHHH
Confidence 2221 122 22333322 22222 111 0 0 35555555441 1244443 443211 2
Q ss_pred hhhhccCCcccccccccc-ccHHHHHHHHHHHcCC
Q psy11975 637 LSGLLVGCAGGINALSAV-LGGPICELYDLAKAGK 670 (786)
Q Consensus 637 L~aL~~GAdG~Isg~aN~-~Pel~vaL~eA~~aGD 670 (786)
...+ .|++|+|.|-+.+ -|.++.++-+.+. |+
T Consensus 221 ~~~l-~~aDgVmIGRa~l~nP~~~~~~~~~~~-~~ 253 (333)
T PRK11815 221 KEHL-QHVDGVMIGRAAYHNPYLLAEVDRELF-GE 253 (333)
T ss_pred HHHH-hcCCEEEEcHHHHhCCHHHHHHHHHhc-CC
Confidence 2333 4899999998765 5888888765554 54
No 57
>PRK06852 aldolase; Validated
Probab=92.63 E-value=1.9 Score=47.57 Aligned_cols=138 Identities=9% Similarity=0.037 Sum_probs=85.2
Q ss_pred CCCeEEEeCCCCC----------HHHHHHHHHHHHHcC------CCEEEEcCCCCCCCCCCHHHHHHHHHHHHhcC---C
Q psy11975 513 WQADLLKPQKHTT----------TRATIDLTQKAAKAG------ANAALILCPYYFQKKMTEDLIYEHFISVADNS---P 573 (786)
Q Consensus 513 GRVPVIaGVGa~S----------T~EAIELAr~Ae~aG------ADAVmViPPyY~kps~S~eeLv~YFraIAeAt---d 573 (786)
.++|+|+.+.+.+ ....+--.+.|.++| ||||.+.- |.... .+.+.++.+.+|++.+ +
T Consensus 91 ~~~~lIlkl~~~t~l~~~~~~~p~~~l~~sVeeAvrlG~~~~~~AdAV~v~v--~~Gs~-~E~~ml~~l~~v~~ea~~~G 167 (304)
T PRK06852 91 PDVPYLVKLNSKTNLVKTSQRDPLSRQLLDVEQVVEFKENSGLNILGVGYTI--YLGSE-YESEMLSEAAQIIYEAHKHG 167 (304)
T ss_pred CCCcEEEEECCCCCcCCcccCCccccceecHHHHHhcCCccCCCceEEEEEE--ecCCH-HHHHHHHHHHHHHHHHHHhC
Confidence 3678888777621 112333467788878 88998874 44332 4667777788888776 7
Q ss_pred CCEEEEeCCCCc--CCccCHHHHH---HHH-hC-CCEEEEEeC------CHHHHHHHHhhcCCCCEEEEeCCcc-----h
Q psy11975 574 IPVIIYNNTFVT--NIDISVDTLV---KLA-HH-ENIRGVKDT------DNIKLANMANQTKDLNFSVFAGSAG-----Y 635 (786)
Q Consensus 574 LPIiLYNiP~~T--Gv~LSpelL~---rLA-ei-PNVVGIKDS------Dl~ri~~ll~~~~~~df~Vf~G~De-----l 635 (786)
+|+++.=+|.-- ...-.+++++ +++ ++ ..|+=+|++ |.+.+.++++ .+++--.|+.|... +
T Consensus 168 lPll~~~yprG~~i~~~~~~~~ia~aaRiaaELGADIVKv~y~~~~~~g~~e~f~~vv~-~~g~vpVviaGG~k~~~~e~ 246 (304)
T PRK06852 168 LIAVLWIYPRGKAVKDEKDPHLIAGAAGVAACLGADFVKVNYPKKEGANPAELFKEAVL-AAGRTKVVCAGGSSTDPEEF 246 (304)
T ss_pred CcEEEEeeccCcccCCCccHHHHHHHHHHHHHHcCCEEEecCCCcCCCCCHHHHHHHHH-hCCCCcEEEeCCCCCCHHHH
Confidence 999986666421 1123445554 444 45 478888886 4688888877 34233345555432 1
Q ss_pred ---hhhhhc-cCCccccccccccc
Q psy11975 636 ---LLSGLL-VGCAGGINALSAVL 655 (786)
Q Consensus 636 ---LL~aL~-~GAdG~Isg~aN~~ 655 (786)
...++. .|+.|.+.|= |+|
T Consensus 247 L~~v~~ai~~aGa~Gv~~GR-NIf 269 (304)
T PRK06852 247 LKQLYEQIHISGASGNATGR-NIH 269 (304)
T ss_pred HHHHHHHHHHcCCceeeech-hhh
Confidence 223566 7888888874 543
No 58
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=91.95 E-value=2.2 Score=47.05 Aligned_cols=144 Identities=12% Similarity=0.084 Sum_probs=88.3
Q ss_pred CCeEEEeCCCCC-------HHHHHHHHHHHHHcCCCEEEE--cCCCCCC--CCCCHHHHHHHHHHHHhcCC-----CCEE
Q psy11975 514 QADLLKPQKHTT-------TRATIDLTQKAAKAGANAALI--LCPYYFQ--KKMTEDLIYEHFISVADNSP-----IPVI 577 (786)
Q Consensus 514 RVPVIaGVGa~S-------T~EAIELAr~Ae~aGADAVmV--iPPyY~k--ps~S~eeLv~YFraIAeAtd-----LPIi 577 (786)
+.|||+.+++++ .+|-+++++.+.+ +||++.+ ..|.+.. ...+.+.+.+..++|.++++ +||+
T Consensus 128 ~~plivsi~g~~~~~~~~~~~d~~~~~~~~~~-~ad~ielN~scP~~~g~~~~~~~~~~~~iv~av~~~~~~~~~~~Pv~ 206 (327)
T cd04738 128 GGPLGVNIGKNKDTPLEDAVEDYVIGVRKLGP-YADYLVVNVSSPNTPGLRDLQGKEALRELLTAVKEERNKLGKKVPLL 206 (327)
T ss_pred CCeEEEEEeCCCCCcccccHHHHHHHHHHHHh-hCCEEEEECCCCCCCccccccCHHHHHHHHHHHHHHHhhcccCCCeE
Confidence 479999998876 5677777777765 4999887 5565421 11246788888999988875 8988
Q ss_pred EEeCCCCcCCccCHHHHHHHH---hCCCEEEEEeC-C----------------------------HHHHHHHHhhcCCCC
Q psy11975 578 IYNNTFVTNIDISVDTLVKLA---HHENIRGVKDT-D----------------------------NIKLANMANQTKDLN 625 (786)
Q Consensus 578 LYNiP~~TGv~LSpelL~rLA---eiPNVVGIKDS-D----------------------------l~ri~~ll~~~~~~d 625 (786)
+==-|. ++.+.+.+++ +--++-||+-. . +..+.++.+ ..+.+
T Consensus 207 vKl~~~-----~~~~~~~~ia~~l~~aGad~I~~~n~~~~~~~~~~~~~~~~~gG~sG~~~~~~~l~~v~~l~~-~~~~~ 280 (327)
T cd04738 207 VKIAPD-----LSDEELEDIADVALEHGVDGIIATNTTISRPGLLRSPLANETGGLSGAPLKERSTEVLRELYK-LTGGK 280 (327)
T ss_pred EEeCCC-----CCHHHHHHHHHHHHHcCCcEEEEECCcccccccccccccCCCCccCChhhhHHHHHHHHHHHH-HhCCC
Confidence 765443 3333333443 22345555532 0 233333333 23334
Q ss_pred EEEE-eC-Cc--chhhhhhccCCccccccccccc--cHHHHHHHH
Q psy11975 626 FSVF-AG-SA--GYLLSGLLVGCAGGINALSAVL--GGPICELYD 664 (786)
Q Consensus 626 f~Vf-~G-~D--elLL~aL~~GAdG~Isg~aN~~--Pel~vaL~e 664 (786)
+.|+ +| -. +.+.+.+.+||++++.+.+.++ |.++.+|.+
T Consensus 281 ipIi~~GGI~t~~da~e~l~aGAd~V~vg~~~~~~gP~~~~~i~~ 325 (327)
T cd04738 281 IPIIGVGGISSGEDAYEKIRAGASLVQLYTGLVYEGPGLVKRIKR 325 (327)
T ss_pred CcEEEECCCCCHHHHHHHHHcCCCHHhccHHHHhhCcHHHHHHHh
Confidence 5544 33 22 2366777899999999988764 777777654
No 59
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=91.85 E-value=2 Score=47.81 Aligned_cols=146 Identities=12% Similarity=0.051 Sum_probs=85.6
Q ss_pred CCeEEEeCCCC-------CHHHHHHHHHHHHHcCCCEEEEc--CCCCC--CCCCCHHHHHHHHHHHHhcCC-----CCEE
Q psy11975 514 QADLLKPQKHT-------TTRATIDLTQKAAKAGANAALIL--CPYYF--QKKMTEDLIYEHFISVADNSP-----IPVI 577 (786)
Q Consensus 514 RVPVIaGVGa~-------ST~EAIELAr~Ae~aGADAVmVi--PPyY~--kps~S~eeLv~YFraIAeAtd-----LPIi 577 (786)
++|||+.++++ +.+|-+++++.+.+ +||++.+- .|..- ....+.+.+.+.+++|.++++ +||+
T Consensus 137 ~~pvivsI~~~~~~~~~~~~~d~~~~~~~~~~-~ad~lelN~scP~~~g~~~~~~~~~~~eiv~aVr~~~~~~~~~~PV~ 215 (344)
T PRK05286 137 GIPLGINIGKNKDTPLEDAVDDYLICLEKLYP-YADYFTVNISSPNTPGLRDLQYGEALDELLAALKEAQAELHGYVPLL 215 (344)
T ss_pred CCcEEEEEecCCCCCcccCHHHHHHHHHHHHh-hCCEEEEEccCCCCCCcccccCHHHHHHHHHHHHHHHhccccCCceE
Confidence 57999999875 56788888888876 69998763 34321 111257788899999998886 8998
Q ss_pred EEeCCCCcCCccCHHHHHHH---HhCCCEEEEEeC----C-------------------------HHHHHHHHhhcCCCC
Q psy11975 578 IYNNTFVTNIDISVDTLVKL---AHHENIRGVKDT----D-------------------------NIKLANMANQTKDLN 625 (786)
Q Consensus 578 LYNiP~~TGv~LSpelL~rL---AeiPNVVGIKDS----D-------------------------l~ri~~ll~~~~~~d 625 (786)
+==-|. ++.+.+.++ ++--++-||.-. + +..+.++.+ ..+++
T Consensus 216 vKlsp~-----~~~~~~~~ia~~l~~~Gadgi~~~nt~~~~~~~~~~~~~~~~gg~SG~~~~~~~l~~v~~l~~-~~~~~ 289 (344)
T PRK05286 216 VKIAPD-----LSDEELDDIADLALEHGIDGVIATNTTLSRDGLKGLPNADEAGGLSGRPLFERSTEVIRRLYK-ELGGR 289 (344)
T ss_pred EEeCCC-----CCHHHHHHHHHHHHHhCCcEEEEeCCccccccccccccCCCCCCcccHHHHHHHHHHHHHHHH-HhCCC
Confidence 876553 443333333 321223333332 1 112222322 22334
Q ss_pred EEEE-eCC-c--chhhhhhccCCccccccccccc--cHHHHHHHHHH
Q psy11975 626 FSVF-AGS-A--GYLLSGLLVGCAGGINALSAVL--GGPICELYDLA 666 (786)
Q Consensus 626 f~Vf-~G~-D--elLL~aL~~GAdG~Isg~aN~~--Pel~vaL~eA~ 666 (786)
+.|+ +|. . +.+.+.+.+||+++..+.+.++ |.++.+|.+.+
T Consensus 290 ipIig~GGI~s~eda~e~l~aGAd~V~v~~~~~~~gP~~~~~i~~~L 336 (344)
T PRK05286 290 LPIIGVGGIDSAEDAYEKIRAGASLVQIYSGLIYEGPGLVKEIVRGL 336 (344)
T ss_pred CCEEEECCCCCHHHHHHHHHcCCCHHHHHHHHHHhCchHHHHHHHHH
Confidence 4443 222 2 2356677788888887777653 77666665543
No 60
>PLN02591 tryptophan synthase
Probab=91.23 E-value=5.6 Score=42.76 Aligned_cols=124 Identities=10% Similarity=-0.009 Sum_probs=79.3
Q ss_pred CCeEEEeCCCCCHH--HHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHhcCCCCEEEEeCCCCcCCccCH
Q psy11975 514 QADLLKPQKHTTTR--ATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISV 591 (786)
Q Consensus 514 RVPVIaGVGa~ST~--EAIELAr~Ae~aGADAVmViPPyY~kps~S~eeLv~YFraIAeAtdLPIiLYNiP~~TGv~LSp 591 (786)
++|+|.=...+..- -.-+..+.|+++|+|++++.. . ..|+..+|.. .+++.++..+..=.|. .+.
T Consensus 78 ~~p~ilm~Y~N~i~~~G~~~F~~~~~~aGv~GviipD-----L--P~ee~~~~~~-~~~~~gl~~I~lv~Pt-----t~~ 144 (250)
T PLN02591 78 SCPIVLFTYYNPILKRGIDKFMATIKEAGVHGLVVPD-----L--PLEETEALRA-EAAKNGIELVLLTTPT-----TPT 144 (250)
T ss_pred CCCEEEEecccHHHHhHHHHHHHHHHHcCCCEEEeCC-----C--CHHHHHHHHH-HHHHcCCeEEEEeCCC-----CCH
Confidence 46876544444322 234568889999999999874 2 2566655555 4577899888887774 456
Q ss_pred HHHHHHHh-CCCEEEE---------EeC---CHHHHHHHHhhcCCCCEEEEeCCcc----hhhhhhccCCcccccccc
Q psy11975 592 DTLVKLAH-HENIRGV---------KDT---DNIKLANMANQTKDLNFSVFAGSAG----YLLSGLLVGCAGGINALS 652 (786)
Q Consensus 592 elL~rLAe-iPNVVGI---------KDS---Dl~ri~~ll~~~~~~df~Vf~G~De----lLL~aL~~GAdG~Isg~a 652 (786)
+-+.++++ -+.++++ +.. ++..+.+.+++ ..+..|+.|.+- ..-..+..|+||+|.|.+
T Consensus 145 ~ri~~ia~~~~gFIY~Vs~~GvTG~~~~~~~~~~~~i~~vk~--~~~~Pv~vGFGI~~~e~v~~~~~~GADGvIVGSa 220 (250)
T PLN02591 145 ERMKAIAEASEGFVYLVSSTGVTGARASVSGRVESLLQELKE--VTDKPVAVGFGISKPEHAKQIAGWGADGVIVGSA 220 (250)
T ss_pred HHHHHHHHhCCCcEEEeeCCCCcCCCcCCchhHHHHHHHHHh--cCCCceEEeCCCCCHHHHHHHHhcCCCEEEECHH
Confidence 77888874 3555555 212 34443333332 246777778762 355567789999999975
No 61
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.
Probab=91.21 E-value=2.3 Score=45.26 Aligned_cols=133 Identities=14% Similarity=0.095 Sum_probs=78.6
Q ss_pred CCCeEEEeCCCCC------HH-HHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHhcC---CCCEEEEeCC
Q psy11975 513 WQADLLKPQKHTT------TR-ATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNS---PIPVIIYNNT 582 (786)
Q Consensus 513 GRVPVIaGVGa~S------T~-EAIELAr~Ae~aGADAVmViPPyY~kps~S~eeLv~YFraIAeAt---dLPIiLYNiP 582 (786)
..++|++.+++.. +. .-+..++.|.+.|||+|.+....- .. ++.+.++..++|.+.+ ++|+++--.+
T Consensus 69 ~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~al~~Ga~~v~~~~~~g--~~-~~~~~~~~~~~i~~~~~~~g~~liv~~~~ 145 (258)
T TIGR01949 69 KDVGLIIHLSASTSLSPDPNDKRIVTTVEDAIRMGADAVSIHVNVG--SD-TEWEQIRDLGMIAEICDDWGVPLLAMMYP 145 (258)
T ss_pred CCCcEEEEEcCCCCCCCCCCcceeeeeHHHHHHCCCCEEEEEEecC--Cc-hHHHHHHHHHHHHHHHHHcCCCEEEEEec
Confidence 3566776663211 12 345668899999999999986432 11 2456667777777654 7999883222
Q ss_pred CCcCCc---cCHHHHHHH---H-hC-CCEEEEEeC-CHHHHHHHHhhcCCCCEEEEeCCc----c----hhhhhhccCCc
Q psy11975 583 FVTNID---ISVDTLVKL---A-HH-ENIRGVKDT-DNIKLANMANQTKDLNFSVFAGSA----G----YLLSGLLVGCA 645 (786)
Q Consensus 583 ~~TGv~---LSpelL~rL---A-ei-PNVVGIKDS-Dl~ri~~ll~~~~~~df~Vf~G~D----e----lLL~aL~~GAd 645 (786)
-|.. ++.+.+.++ + +. ..++++... ++..+.++.+. ..-.+....|-. + .+-..+.+|++
T Consensus 146 --~Gvh~~~~~~~~~~~~~~~a~~~GADyikt~~~~~~~~l~~~~~~-~~iPVva~GGi~~~~~~~~~~~i~~~~~aGa~ 222 (258)
T TIGR01949 146 --RGPHIDDRDPELVAHAARLGAELGADIVKTPYTGDIDSFRDVVKG-CPAPVVVAGGPKTNSDREFLQMIKDAMEAGAA 222 (258)
T ss_pred --cCcccccccHHHHHHHHHHHHHHCCCEEeccCCCCHHHHHHHHHh-CCCcEEEecCCCCCCHHHHHHHHHHHHHcCCc
Confidence 1222 445666553 3 22 455555544 88888888762 334455455554 1 23345589999
Q ss_pred cccccc
Q psy11975 646 GGINAL 651 (786)
Q Consensus 646 G~Isg~ 651 (786)
|+..+.
T Consensus 223 Gia~g~ 228 (258)
T TIGR01949 223 GVAVGR 228 (258)
T ss_pred EEehhh
Confidence 776664
No 62
>PRK02506 dihydroorotate dehydrogenase 1A; Reviewed
Probab=90.99 E-value=2.7 Score=46.19 Aligned_cols=69 Identities=9% Similarity=-0.014 Sum_probs=53.2
Q ss_pred CCeEEEeCCCCCHHHHHHHHHHHHHcC-CCEEEE--cCCCCCC---CCCCHHHHHHHHHHHHhcCCCCEEEEeCC
Q psy11975 514 QADLLKPQKHTTTRATIDLTQKAAKAG-ANAALI--LCPYYFQ---KKMTEDLIYEHFISVADNSPIPVIIYNNT 582 (786)
Q Consensus 514 RVPVIaGVGa~ST~EAIELAr~Ae~aG-ADAVmV--iPPyY~k---ps~S~eeLv~YFraIAeAtdLPIiLYNiP 582 (786)
+.|||+.+.+.+.++-.+.++.++++| ||++-+ ..|..-. ...+.+.+.+..++|-+++++||++==-|
T Consensus 92 ~~pvI~Si~G~~~~~~~~~a~~~~~~g~ad~iElN~ScPn~~~~~~~g~d~~~~~~i~~~v~~~~~~Pv~vKlsp 166 (310)
T PRK02506 92 NKPHFLSVVGLSPEETHTILKKIQASDFNGLVELNLSCPNVPGKPQIAYDFETTEQILEEVFTYFTKPLGVKLPP 166 (310)
T ss_pred CCCEEEEEEeCcHHHHHHHHHHHhhcCCCCEEEEECCCCCCCCccccccCHHHHHHHHHHHHHhcCCccEEecCC
Confidence 379999999999999999999999998 999875 3343211 11146788899999988889998875444
No 63
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=90.91 E-value=3.3 Score=43.99 Aligned_cols=125 Identities=14% Similarity=0.100 Sum_probs=79.0
Q ss_pred EEEeCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCC----CCCC---CCHHHHHHHHHHHHhcCCCCEEEEeCCCCcCCcc
Q psy11975 517 LLKPQKHTTTRATIDLTQKAAKAGANAALILCPYY----FQKK---MTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDI 589 (786)
Q Consensus 517 VIaGVGa~ST~EAIELAr~Ae~aGADAVmViPPyY----~kps---~S~eeLv~YFraIAeAtdLPIiLYNiP~~TGv~L 589 (786)
++.++-.. --|+.++++|+|++.+..--. -.|+ ++-+++..+.+.|+.++.+| ++-|++.-.|
T Consensus 12 ~~~~~~D~------~sA~~~e~~G~~ai~~s~~~~~~s~G~pD~~~~~~~e~~~~~~~I~~~~~~P-v~~D~~~G~g--- 81 (243)
T cd00377 12 VLPGAWDA------LSARLAERAGFKAIYTSGAGVAASLGLPDGGLLTLDEVLAAVRRIARAVDLP-VIADADTGYG--- 81 (243)
T ss_pred EecCCCCH------HHHHHHHHcCCCEEEeccHHHHHhcCCCCCCcCCHHHHHHHHHHHHhhccCC-EEEEcCCCCC---
Confidence 44466653 236677778999998876321 1121 46899999999999999999 7778875444
Q ss_pred CHHHHHHHHh---CCCEEEEEeC-----------------CH----HHHHHHHhhcCC-CCEEEEeCCcchhh-------
Q psy11975 590 SVDTLVKLAH---HENIRGVKDT-----------------DN----IKLANMANQTKD-LNFSVFAGSAGYLL------- 637 (786)
Q Consensus 590 SpelL~rLAe---iPNVVGIKDS-----------------Dl----~ri~~ll~~~~~-~df~Vf~G~DelLL------- 637 (786)
+.+.+.+.++ --.+.|||.+ +. .++...++...+ ++|.|+.+.|..+.
T Consensus 82 ~~~~~~~~v~~~~~~G~~gv~iED~~~~k~~g~~~~~~~~~~ee~~~ki~aa~~a~~~~~~~~IiARTDa~~~~~~~~~e 161 (243)
T cd00377 82 NALNVARTVRELEEAGAAGIHIEDQVGPKKCGHHGGKVLVPIEEFVAKIKAARDARDDLPDFVIIARTDALLAGEEGLDE 161 (243)
T ss_pred CHHHHHHHHHHHHHcCCEEEEEecCCCCccccCCCCCeecCHHHHHHHHHHHHHHHhccCCeEEEEEcCchhccCCCHHH
Confidence 3344444431 2688999983 22 333334432223 58999998665433
Q ss_pred ------hhhccCCccccccc
Q psy11975 638 ------SGLLVGCAGGINAL 651 (786)
Q Consensus 638 ------~aL~~GAdG~Isg~ 651 (786)
....+|+|+++.-.
T Consensus 162 ai~Ra~ay~~AGAD~v~v~~ 181 (243)
T cd00377 162 AIERAKAYAEAGADGIFVEG 181 (243)
T ss_pred HHHHHHHHHHcCCCEEEeCC
Confidence 13447888776543
No 64
>cd08209 RLP_DK-MTP-1-P-enolase 2,3-diketo-5-methylthiopentyl-1-phosphate enolase. Ribulose bisphosphate carboxylase like proteins (RLPs) similar to B. subtilis YkrW protein, have been identified as 2,3-diketo-5-methylthiopentyl-1-phosphate enolases. They catalyze the tautomerization of 2,3-diketo-5-methylthiopentane 1-phosphate (DK-MTP 1-P). This is an important step in the methionine salvage pathway in which 5-methylthio-D-ribose (MTR) derived from 5'-methylthioadenosine is converted to methionine.
Probab=90.69 E-value=3.7 Score=46.87 Aligned_cols=60 Identities=15% Similarity=0.141 Sum_probs=42.7
Q ss_pred ccCCCCeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHh--cCCCCEEEE
Q psy11975 510 EREWQADLLKPQKHTTTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVAD--NSPIPVIIY 579 (786)
Q Consensus 510 evaGRVPVIaGVGa~ST~EAIELAr~Ae~aGADAVmViPPyY~kps~S~eeLv~YFraIAe--AtdLPIiLY 579 (786)
+++.+.--.+++++. +++.++.++.|+++|++++|+-+-.+ + +.-++.+++ ..++||+.+
T Consensus 188 eTG~~~~ya~NiT~~-~~em~~ra~~~~~~G~~~~mv~~~~~---G------~~~l~~l~~~~~~~lpIhaH 249 (391)
T cd08209 188 QTGRRTLYAVNLTGP-VFTLKEKARRLVEAGANALLFNVFAY---G------LDVLEALASDPEINVPIFAH 249 (391)
T ss_pred hhCCcceEEEEcCCC-HHHHHHHHHHHHHhCCCEEEEecccc---c------hHHHHHHHhcCcCCcEEEec
Confidence 344455567799974 89999999999999999999986433 2 122555665 446777644
No 65
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=90.56 E-value=8.3 Score=42.02 Aligned_cols=124 Identities=14% Similarity=0.131 Sum_probs=78.0
Q ss_pred CCCeEEEeCCCCC-HHH-HHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHhcCCCCEEEEeCCCCcCCccC
Q psy11975 513 WQADLLKPQKHTT-TRA-TIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDIS 590 (786)
Q Consensus 513 GRVPVIaGVGa~S-T~E-AIELAr~Ae~aGADAVmViPPyY~kps~S~eeLv~YFraIAeAtdLPIiLYNiP~~TGv~LS 590 (786)
.++|++.=...+- ..- .-+..++|+++|+|++++.-=. .|+ -+.|...|++.++..+..-.|. -+
T Consensus 93 ~~~Pivlm~Y~Npi~~~Gie~F~~~~~~~GvdGlivpDLP-------~ee-~~~~~~~~~~~gi~~I~lvaPt-----t~ 159 (265)
T COG0159 93 VKVPIVLMTYYNPIFNYGIEKFLRRAKEAGVDGLLVPDLP-------PEE-SDELLKAAEKHGIDPIFLVAPT-----TP 159 (265)
T ss_pred CCCCEEEEEeccHHHHhhHHHHHHHHHHcCCCEEEeCCCC-------hHH-HHHHHHHHHHcCCcEEEEeCCC-----CC
Confidence 4678887555543 233 3345899999999999987521 222 3456667778899888888774 35
Q ss_pred HHHHHHHHhCC----------CEEEEEeC---CHHHHHHHHhhcCCCCEEEEeCCc----chhhhhhccCCcccccccc
Q psy11975 591 VDTLVKLAHHE----------NIRGVKDT---DNIKLANMANQTKDLNFSVFAGSA----GYLLSGLLVGCAGGINALS 652 (786)
Q Consensus 591 pelL~rLAeiP----------NVVGIKDS---Dl~ri~~ll~~~~~~df~Vf~G~D----elLL~aL~~GAdG~Isg~a 652 (786)
.+.+.++++.- .+.|.+.. ++.+..+-+++. .+.-++.|.+ +........ +||+|.|++
T Consensus 160 ~~rl~~i~~~a~GFiY~vs~~GvTG~~~~~~~~~~~~v~~vr~~--~~~Pv~vGFGIs~~e~~~~v~~~-ADGVIVGSA 235 (265)
T COG0159 160 DERLKKIAEAASGFIYYVSRMGVTGARNPVSADVKELVKRVRKY--TDVPVLVGFGISSPEQAAQVAEA-ADGVIVGSA 235 (265)
T ss_pred HHHHHHHHHhCCCcEEEEecccccCCCcccchhHHHHHHHHHHh--cCCCeEEecCcCCHHHHHHHHHh-CCeEEEcHH
Confidence 78888888542 33333443 223333333322 3566777765 345666677 999999975
No 66
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=90.51 E-value=9.2 Score=40.45 Aligned_cols=147 Identities=11% Similarity=0.066 Sum_probs=82.5
Q ss_pred CCeEEEeCCCCC-HHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHhcCCCCEEEEeCCCCcCCccCHH
Q psy11975 514 QADLLKPQKHTT-TRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVD 592 (786)
Q Consensus 514 RVPVIaGVGa~S-T~EAIELAr~Ae~aGADAVmViPPyY~kps~S~eeLv~YFraIAeAtdLPIiLYNiP~~TGv~LSpe 592 (786)
++|++.-+--+. ..+-.+.++.++++|+|++++..=.|- ..+++.++++ .+...++..++.=.|. -+.+
T Consensus 74 ~~Pl~lM~y~n~~~~~~~~~i~~~~~~Gadgvii~dlp~e----~~~~~~~~~~-~~~~~Gl~~~~~v~p~-----T~~e 143 (244)
T PRK13125 74 SVPIILMTYLEDYVDSLDNFLNMARDVGADGVLFPDLLID----YPDDLEKYVE-IIKNKGLKPVFFTSPK-----FPDL 143 (244)
T ss_pred CCCEEEEEecchhhhCHHHHHHHHHHcCCCEEEECCCCCC----cHHHHHHHHH-HHHHcCCCEEEEECCC-----CCHH
Confidence 467654322221 345566788899999999999631111 1345555444 4456788888877774 2467
Q ss_pred HHHHHHh-CCCEEEE--EeC-------CH-HHHHHHHhhcCCCCEEEEeCCc----chhhhhhccCCccccccccccccH
Q psy11975 593 TLVKLAH-HENIRGV--KDT-------DN-IKLANMANQTKDLNFSVFAGSA----GYLLSGLLVGCAGGINALSAVLGG 657 (786)
Q Consensus 593 lL~rLAe-iPNVVGI--KDS-------Dl-~ri~~ll~~~~~~df~Vf~G~D----elLL~aL~~GAdG~Isg~aN~~Pe 657 (786)
.+..+++ .+.|+.+ .-. ++ ..+.++.+ .. ++..+..|.. +.+...+..|+||++.|.+
T Consensus 144 ~l~~~~~~~~~~l~msv~~~~g~~~~~~~~~~i~~lr~-~~-~~~~i~v~gGI~~~e~i~~~~~~gaD~vvvGSa----- 216 (244)
T PRK13125 144 LIHRLSKLSPLFIYYGLRPATGVPLPVSVERNIKRVRN-LV-GNKYLVVGFGLDSPEDARDALSAGADGVVVGTA----- 216 (244)
T ss_pred HHHHHHHhCCCEEEEEeCCCCCCCchHHHHHHHHHHHH-hc-CCCCEEEeCCcCCHHHHHHHHHcCCCEEEECHH-----
Confidence 8888874 6777643 222 22 24444433 22 1222343332 2345557899999999975
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHh
Q psy11975 658 PICELYDLAKAGKWEEAMKLQHRL 681 (786)
Q Consensus 658 l~vaL~eA~~aGD~eeAreLQ~rL 681 (786)
+++.+.+++.+++.++.+.+
T Consensus 217 ----i~~~~~~~~~~~~~~~~~~~ 236 (244)
T PRK13125 217 ----FIEELEKNGVESALNLLKKI 236 (244)
T ss_pred ----HHHHHHhcCHHHHHHHHHHH
Confidence 22222335555555544443
No 67
>smart00743 Agenet Tudor-like domain present in plant sequences. Domain in plant sequences with possible chromatin-associated functions.
Probab=90.34 E-value=0.2 Score=41.62 Aligned_cols=52 Identities=15% Similarity=0.187 Sum_probs=39.2
Q ss_pred CCCCCceEEEec-ccCCCCCccccCCCCCCCcEEEEEeC--CCCCccccccccccccc
Q psy11975 356 GLAEGDLVWGSV-KGYPSWPGKLISPAPTQGRVWVKWFG--MSNEPLSEVEPATLKSL 410 (786)
Q Consensus 356 ~f~vGDLVWaKv-kG~PwWPg~V~~~~~~~g~~~V~fFG--~~~~a~s~V~~k~LkpF 410 (786)
.|.+||+|-++- ..-.||+|+|..-.. .++|.|.|.+ .+ .-..++.++|+|.
T Consensus 2 ~~~~G~~Ve~~~~~~~~W~~a~V~~~~~-~~~~~V~~~~~~~~--~~e~v~~~~LRp~ 56 (61)
T smart00743 2 DFKKGDRVEVFSKEEDSWWEAVVTKVLG-DGKYLVRYLTESEP--LKETVDWSDLRPH 56 (61)
T ss_pred CcCCCCEEEEEECCCCEEEEEEEEEECC-CCEEEEEECCCCcc--cEEEEeHHHcccC
Confidence 589999999997 345899999998765 5679999988 44 2334566677664
No 68
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=89.80 E-value=8.1 Score=42.83 Aligned_cols=129 Identities=14% Similarity=0.177 Sum_probs=77.6
Q ss_pred CeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHhcCC-CCEEEEeCCCCcCCccCHHH
Q psy11975 515 ADLLKPQKHTTTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSP-IPVIIYNNTFVTNIDISVDT 593 (786)
Q Consensus 515 VPVIaGVGa~ST~EAIELAr~Ae~aGADAVmViPPyY~kps~S~eeLv~YFraIAeAtd-LPIiLYNiP~~TGv~LSpel 593 (786)
+.|.+.++. ..+..++++.+.++|+|.|.+-.-. . +.+.+.+..+.|-++.+ +||++ |...+.+.
T Consensus 83 l~v~~~~~~--~~~~~~~~~~l~eagv~~I~vd~~~--G---~~~~~~~~i~~ik~~~p~v~Vi~-------G~v~t~~~ 148 (325)
T cd00381 83 LLVGAAVGT--REDDKERAEALVEAGVDVIVIDSAH--G---HSVYVIEMIKFIKKKYPNVDVIA-------GNVVTAEA 148 (325)
T ss_pred ceEEEecCC--ChhHHHHHHHHHhcCCCEEEEECCC--C---CcHHHHHHHHHHHHHCCCceEEE-------CCCCCHHH
Confidence 334444443 3677889999999999998875432 1 13456677777776664 88887 45577888
Q ss_pred HHHHHh--CCCEE-EEE---------e--C---CHHHHHHHHhhcCCCCEEEEe--CCc--chhhhhhccCCcccccccc
Q psy11975 594 LVKLAH--HENIR-GVK---------D--T---DNIKLANMANQTKDLNFSVFA--GSA--GYLLSGLLVGCAGGINALS 652 (786)
Q Consensus 594 L~rLAe--iPNVV-GIK---------D--S---Dl~ri~~ll~~~~~~df~Vf~--G~D--elLL~aL~~GAdG~Isg~a 652 (786)
..++.+ .+.|+ |+- . . ++..+.++.+....-++.|+. |-. ..+..+|.+|++|++.|..
T Consensus 149 A~~l~~aGaD~I~vg~g~G~~~~t~~~~g~g~p~~~~i~~v~~~~~~~~vpVIA~GGI~~~~di~kAla~GA~~VmiGt~ 228 (325)
T cd00381 149 ARDLIDAGADGVKVGIGPGSICTTRIVTGVGVPQATAVADVAAAARDYGVPVIADGGIRTSGDIVKALAAGADAVMLGSL 228 (325)
T ss_pred HHHHHhcCCCEEEECCCCCcCcccceeCCCCCCHHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHcCCCEEEecch
Confidence 888875 33332 111 0 1 233334443321112456665 332 3477889999999999876
Q ss_pred ccccH
Q psy11975 653 AVLGG 657 (786)
Q Consensus 653 N~~Pe 657 (786)
-...+
T Consensus 229 fa~t~ 233 (325)
T cd00381 229 LAGTD 233 (325)
T ss_pred hcccc
Confidence 54443
No 69
>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway. Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.
Probab=89.39 E-value=4.8 Score=43.42 Aligned_cols=96 Identities=15% Similarity=0.163 Sum_probs=65.0
Q ss_pred EEEeCCCCCHHHHHHHHHHHHHcCCCEEEEcCCC----CCCCC---CCHHHHHHHHHHHHhcCCCCEEEEeCCCCcCCcc
Q psy11975 517 LLKPQKHTTTRATIDLTQKAAKAGANAALILCPY----YFQKK---MTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDI 589 (786)
Q Consensus 517 VIaGVGa~ST~EAIELAr~Ae~aGADAVmViPPy----Y~kps---~S~eeLv~YFraIAeAtdLPIiLYNiP~~TGv~L 589 (786)
++.++-.. --|+.++++|+|++++.... +..++ ++-++++.|.+.|++++++|+++=|.|- .++.-
T Consensus 15 ~~~~ayD~------~sA~l~e~aG~d~i~vGds~~~~~lG~pDt~~vtl~em~~~~~~V~r~~~~p~viaD~~f-g~y~~ 87 (254)
T cd06557 15 VMLTAYDY------PTAKLADEAGVDVILVGDSLGMVVLGYDSTLPVTLDEMIYHTRAVRRGAPRALVVADMPF-GSYQT 87 (254)
T ss_pred EEEeCCCH------HHHHHHHHcCCCEEEECHHHHHHHcCCCCCCCcCHHHHHHHHHHHHhcCCCCeEEEeCCC-CcccC
Confidence 44565552 34677788899999865331 11222 4799999999999999999988899972 34444
Q ss_pred CHHHH----HHHHhCCCEEEEEeC-C---HHHHHHHHh
Q psy11975 590 SVDTL----VKLAHHENIRGVKDT-D---NIKLANMAN 619 (786)
Q Consensus 590 SpelL----~rLAeiPNVVGIKDS-D---l~ri~~ll~ 619 (786)
+++.. .++.+--.+.|||.+ . ..+++.+.+
T Consensus 88 ~~~~av~~a~r~~~~aGa~aVkiEd~~~~~~~I~al~~ 125 (254)
T cd06557 88 SPEQALRNAARLMKEAGADAVKLEGGAEVAETIRALVD 125 (254)
T ss_pred CHHHHHHHHHHHHHHhCCeEEEEcCcHHHHHHHHHHHH
Confidence 45554 444444789999999 3 344554443
No 70
>cd08206 RuBisCO_large_I_II_III Ribulose bisphosphate carboxylase large chain, Form I,II,III. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubico-like proteins (RLP), are missing critical active site residues.
Probab=89.34 E-value=4.4 Score=46.65 Aligned_cols=88 Identities=16% Similarity=0.035 Sum_probs=55.3
Q ss_pred ccCCCCeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHh---cCCCCEEEEeCCCCcC
Q psy11975 510 EREWQADLLKPQKHTTTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVAD---NSPIPVIIYNNTFVTN 586 (786)
Q Consensus 510 evaGRVPVIaGVGa~ST~EAIELAr~Ae~aGADAVmViPPyY~kps~S~eeLv~YFraIAe---AtdLPIiLYNiP~~TG 586 (786)
+++.+.--.+++++.++++.++.++.|+++|+.++|+-+-.+- . .-++.+++ ..++||..+-. ..|
T Consensus 196 eTG~~~~y~~NiT~~~~~em~~ra~~~~~~G~~~~mv~~~~~G-~--------~~l~~l~~~~~~~~l~ih~HrA--~~g 264 (414)
T cd08206 196 ETGEAKGHYLNITADTPEEMIKRAEFAKELGSVIVMVDGVTAG-W--------TAIQSARRWCPDNGLALHAHRA--GHA 264 (414)
T ss_pred hhCCcceEEeccCCCcHHHHHHHHHHHHHhCCcEEEEeeeccc-H--------HHHHHHHHhccccCeEEEEccc--cce
Confidence 3444455566999878999999999999999999999864432 2 22444444 34566665432 222
Q ss_pred -------CccCHHHHHHHH-----h---CCCEEEEEeC
Q psy11975 587 -------IDISVDTLVKLA-----H---HENIRGVKDT 609 (786)
Q Consensus 587 -------v~LSpelL~rLA-----e---iPNVVGIKDS 609 (786)
..++...+.+|. + +|++.| |..
T Consensus 265 a~~~~~~~Gis~~vl~kl~RLaGaD~ih~~t~~G-k~~ 301 (414)
T cd08206 265 AFTRQKNHGISMRVLAKLARLIGVDHIHTGTVVG-KLE 301 (414)
T ss_pred ecccCCCCcCcHHHHHHHHHHcCCCccccCCCcc-CCC
Confidence 235555555554 2 477754 555
No 71
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=89.33 E-value=17 Score=39.52 Aligned_cols=124 Identities=15% Similarity=0.146 Sum_probs=77.9
Q ss_pred CeEEEeCCCC-CHHHHHHHHHHHHHcCCCEEEEcC--CCCCCCCCCHHHHHHHHHHHHhcCCCCEEEEeCCCCcCCccCH
Q psy11975 515 ADLLKPQKHT-TTRATIDLTQKAAKAGANAALILC--PYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISV 591 (786)
Q Consensus 515 VPVIaGVGa~-ST~EAIELAr~Ae~aGADAVmViP--PyY~kps~S~eeLv~YFraIAeAtdLPIiLYNiP~~TGv~LSp 591 (786)
.|+.+++... +.++..++++.+.+.|+|++.+.- |.- .. ....+..+.|.+++++||++=.. +++
T Consensus 116 ~~~~~ql~~~~~~~~~~~~i~~~~~~g~~~i~l~~~~p~~--~~---~~~~~~i~~l~~~~~~pvivK~v-------~s~ 183 (299)
T cd02809 116 GPRWFQLYVPRDREITEDLLRRAEAAGYKALVLTVDTPVL--GR---RLTWDDLAWLRSQWKGPLILKGI-------LTP 183 (299)
T ss_pred CCeEEEEeecCCHHHHHHHHHHHHHcCCCEEEEecCCCCC--CC---CCCHHHHHHHHHhcCCCEEEeec-------CCH
Confidence 4677776554 778888999999999999988742 321 11 12346778888888999998753 567
Q ss_pred HHHHHHHhC--CCEEE-----E-EeC---CHHHHHHHHhhcCCCCEEEEeCCc----chhhhhhccCCccccccc
Q psy11975 592 DTLVKLAHH--ENIRG-----V-KDT---DNIKLANMANQTKDLNFSVFAGSA----GYLLSGLLVGCAGGINAL 651 (786)
Q Consensus 592 elL~rLAei--PNVVG-----I-KDS---Dl~ri~~ll~~~~~~df~Vf~G~D----elLL~aL~~GAdG~Isg~ 651 (786)
+...++.+. ..|+- . .+. ++..+.++.+. ..+++.|+.-.+ ..++.++.+||+|++.|.
T Consensus 184 ~~a~~a~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~-~~~~ipvia~GGI~~~~d~~kal~lGAd~V~ig~ 257 (299)
T cd02809 184 EDALRAVDAGADGIVVSNHGGRQLDGAPATIDALPEIVAA-VGGRIEVLLDGGIRRGTDVLKALALGADAVLIGR 257 (299)
T ss_pred HHHHHHHHCCCCEEEEcCCCCCCCCCCcCHHHHHHHHHHH-hcCCCeEEEeCCCCCHHHHHHHHHcCCCEEEEcH
Confidence 777776653 22211 0 112 34455555442 233455443322 236778899999999997
No 72
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=89.16 E-value=14 Score=40.10 Aligned_cols=124 Identities=15% Similarity=0.065 Sum_probs=75.3
Q ss_pred CCeEEEeCCCCCHH--HHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHhcCCCCEEEEeCCCCcCCccCH
Q psy11975 514 QADLLKPQKHTTTR--ATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISV 591 (786)
Q Consensus 514 RVPVIaGVGa~ST~--EAIELAr~Ae~aGADAVmViPPyY~kps~S~eeLv~YFraIAeAtdLPIiLYNiP~~TGv~LSp 591 (786)
++|+|.=...+..- -.-++.+.|+++|+|++++..= | .++..+|++ .+++.++..+..=.|. -+.
T Consensus 91 ~~p~vlm~Y~N~i~~~G~e~F~~~~~~aGvdgviipDL----P---~ee~~~~~~-~~~~~gi~~I~lv~Pt-----T~~ 157 (263)
T CHL00200 91 KAPIVIFTYYNPVLHYGINKFIKKISQAGVKGLIIPDL----P---YEESDYLIS-VCNLYNIELILLIAPT-----SSK 157 (263)
T ss_pred CCCEEEEecccHHHHhCHHHHHHHHHHcCCeEEEecCC----C---HHHHHHHHH-HHHHcCCCEEEEECCC-----CCH
Confidence 46866544444322 2245788999999999998641 1 455555555 4567788888887774 256
Q ss_pred HHHHHHHh-CC---------CEEEEEeC---CHHHHHHHHhhcCCCCEEEEeCCc----chhhhhhccCCcccccccc
Q psy11975 592 DTLVKLAH-HE---------NIRGVKDT---DNIKLANMANQTKDLNFSVFAGSA----GYLLSGLLVGCAGGINALS 652 (786)
Q Consensus 592 elL~rLAe-iP---------NVVGIKDS---Dl~ri~~ll~~~~~~df~Vf~G~D----elLL~aL~~GAdG~Isg~a 652 (786)
+.+.++++ .. .+.|.+.. ++..+.+.+++.. +..+..|.+ +..-.....|+||+|.|.+
T Consensus 158 eri~~i~~~a~gFIY~vS~~GvTG~~~~~~~~~~~~i~~ir~~t--~~Pi~vGFGI~~~e~~~~~~~~GADGvVVGSa 233 (263)
T CHL00200 158 SRIQKIARAAPGCIYLVSTTGVTGLKTELDKKLKKLIETIKKMT--NKPIILGFGISTSEQIKQIKGWNINGIVIGSA 233 (263)
T ss_pred HHHHHHHHhCCCcEEEEcCCCCCCCCccccHHHHHHHHHHHHhc--CCCEEEECCcCCHHHHHHHHhcCCCEEEECHH
Confidence 77777774 23 34444533 3444444444222 344455554 2345556789999999975
No 73
>cd08207 RLP_NonPhot Ribulose bisphosphate carboxylase like proteins from nonphototrophic bacteria. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions. The specific function of this subgroup is unknown.
Probab=88.90 E-value=6.6 Score=45.10 Aligned_cols=60 Identities=7% Similarity=-0.032 Sum_probs=43.2
Q ss_pred ccCCCCeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHhcCCCCEEEE
Q psy11975 510 EREWQADLLKPQKHTTTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIY 579 (786)
Q Consensus 510 evaGRVPVIaGVGa~ST~EAIELAr~Ae~aGADAVmViPPyY~kps~S~eeLv~YFraIAeAtdLPIiLY 579 (786)
+++.+.-..+++++. +++.++.++.|+++|++++|+-+-.+- . .-++.+++..++||..+
T Consensus 207 eTG~~~~y~~NiT~~-~~em~~ra~~~~~~G~~~~mv~~~~~G-~--------~~l~~l~~~~~l~IhaH 266 (406)
T cd08207 207 RTGRKVMYAFNITDD-IDEMRRNHDLVVEAGGTCVMVSLNSVG-L--------SGLAALRRHSQLPIHGH 266 (406)
T ss_pred hhCCcceEEEecCCC-HHHHHHHHHHHHHhCCCeEEEeccccc-h--------HHHHHHHhcCCceEEEC
Confidence 344445556799986 999999999999999999999864332 1 22444555567888754
No 74
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=88.62 E-value=15 Score=39.58 Aligned_cols=123 Identities=13% Similarity=0.058 Sum_probs=73.5
Q ss_pred CCeEEEeCCCCCHH--HHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHhcCCCCEEEEeCCCCcCCccCH
Q psy11975 514 QADLLKPQKHTTTR--ATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISV 591 (786)
Q Consensus 514 RVPVIaGVGa~ST~--EAIELAr~Ae~aGADAVmViPPyY~kps~S~eeLv~YFraIAeAtdLPIiLYNiP~~TGv~LSp 591 (786)
.+|+++=...+..- -.-++.+.|+++|+|++++. . +..++..+|+... +..++..+..=.|. .+.
T Consensus 89 ~~p~vlm~Y~N~i~~~G~e~f~~~~~~aGvdGviip-----D--Lp~ee~~~~~~~~-~~~gl~~I~lvap~-----t~~ 155 (258)
T PRK13111 89 TIPIVLMTYYNPIFQYGVERFAADAAEAGVDGLIIP-----D--LPPEEAEELRAAA-KKHGLDLIFLVAPT-----TTD 155 (258)
T ss_pred CCCEEEEecccHHhhcCHHHHHHHHHHcCCcEEEEC-----C--CCHHHHHHHHHHH-HHcCCcEEEEeCCC-----CCH
Confidence 46876544444322 22356888899999999993 1 2257777766654 66788888776663 356
Q ss_pred HHHHHHHh-CCCEEEEE---e------C---CHHHHHHHHhhcCCCCEEEEeCCcc----hhhhhhccCCcccccccc
Q psy11975 592 DTLVKLAH-HENIRGVK---D------T---DNIKLANMANQTKDLNFSVFAGSAG----YLLSGLLVGCAGGINALS 652 (786)
Q Consensus 592 elL~rLAe-iPNVVGIK---D------S---Dl~ri~~ll~~~~~~df~Vf~G~De----lLL~aL~~GAdG~Isg~a 652 (786)
+.+.++++ -+.++++- - . ++..+.+.+++.. +..++.|..- .+...+ .++||++.|++
T Consensus 156 eri~~i~~~s~gfIY~vs~~GvTG~~~~~~~~~~~~i~~vk~~~--~~pv~vGfGI~~~e~v~~~~-~~ADGviVGSa 230 (258)
T PRK13111 156 ERLKKIASHASGFVYYVSRAGVTGARSADAADLAELVARLKAHT--DLPVAVGFGISTPEQAAAIA-AVADGVIVGSA 230 (258)
T ss_pred HHHHHHHHhCCCcEEEEeCCCCCCcccCCCccHHHHHHHHHhcC--CCcEEEEcccCCHHHHHHHH-HhCCEEEEcHH
Confidence 77888875 35655541 1 1 3343333333222 4556666642 233334 45999999975
No 75
>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed
Probab=88.22 E-value=3 Score=45.18 Aligned_cols=96 Identities=15% Similarity=0.154 Sum_probs=65.5
Q ss_pred EEEeCCCCCHHHHHHHHHHHHHcCCCEEEEcCCC----CCCCC---CCHHHHHHHHHHHHhcCCCCEEEEeCCCCcCCcc
Q psy11975 517 LLKPQKHTTTRATIDLTQKAAKAGANAALILCPY----YFQKK---MTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDI 589 (786)
Q Consensus 517 VIaGVGa~ST~EAIELAr~Ae~aGADAVmViPPy----Y~kps---~S~eeLv~YFraIAeAtdLPIiLYNiP~~TGv~L 589 (786)
++.++-.. --|+.++++|+|++++..-. +-.++ ++-++++.|.+.|++++++|+++=|.|- .++..
T Consensus 18 ~~~tayD~------~sArl~e~aG~d~i~vGds~~~~~lG~~Dt~~vtl~em~~h~~~V~r~~~~p~vvaD~pf-g~y~~ 90 (264)
T PRK00311 18 VMLTAYDY------PFAKLFDEAGVDVILVGDSLGMVVLGYDSTLPVTLDDMIYHTKAVARGAPRALVVADMPF-GSYQA 90 (264)
T ss_pred EEEeCCCH------HHHHHHHHcCCCEEEECHHHHHHHcCCCCCCCcCHHHHHHHHHHHHhcCCCCcEEEeCCC-CCccC
Confidence 45566553 34677788899999865221 11121 4799999999999999999988899983 45556
Q ss_pred CHHH----HHHHHhCCCEEEEEeC-C---HHHHHHHHh
Q psy11975 590 SVDT----LVKLAHHENIRGVKDT-D---NIKLANMAN 619 (786)
Q Consensus 590 Spel----L~rLAeiPNVVGIKDS-D---l~ri~~ll~ 619 (786)
+++. ..++.+.-.+.|||.+ . ..+++.+.+
T Consensus 91 ~~~~av~~a~r~~~~aGa~aVkiEdg~~~~~~I~al~~ 128 (264)
T PRK00311 91 SPEQALRNAGRLMKEAGAHAVKLEGGEEVAETIKRLVE 128 (264)
T ss_pred CHHHHHHHHHHHHHHhCCeEEEEcCcHHHHHHHHHHHH
Confidence 6654 3455554589999999 2 244444443
No 76
>PRK13813 orotidine 5'-phosphate decarboxylase; Provisional
Probab=88.12 E-value=7.5 Score=39.89 Aligned_cols=111 Identities=15% Similarity=0.107 Sum_probs=65.7
Q ss_pred HHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHhcCCCCEEEEeCCCCc-CCccC---HHHHHHHHhCCCEEEEEeC
Q psy11975 534 QKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVT-NIDIS---VDTLVKLAHHENIRGVKDT 609 (786)
Q Consensus 534 r~Ae~aGADAVmViPPyY~kps~S~eeLv~YFraIAeAtdLPIiLYNiP~~T-Gv~LS---pelL~rLAeiPNVVGIKDS 609 (786)
+.+.++|||++.+..- .+ .+.+.+..+. ++..++++++-=.|..- +...- .+.+.+++..|.+.|.|..
T Consensus 74 ~~~~~~gad~vtvh~e----~g--~~~l~~~i~~-~~~~g~~~~v~~~~~~~~~~~~~~~~~~~v~~m~~e~G~~g~~~~ 146 (215)
T PRK13813 74 EAVFEAGAWGIIVHGF----TG--RDSLKAVVEA-AAESGGKVFVVVEMSHPGALEFIQPHADKLAKLAQEAGAFGVVAP 146 (215)
T ss_pred HHHHhCCCCEEEEcCc----CC--HHHHHHHHHH-HHhcCCeEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhCCCeEEEC
Confidence 6788899999888753 22 3334443333 44567777653334321 11211 2333444456889999988
Q ss_pred --CHHHHHHHHhhcCCCCEEEEeCC-cc---hhhhhhccCCcccccccc
Q psy11975 610 --DNIKLANMANQTKDLNFSVFAGS-AG---YLLSGLLVGCAGGINALS 652 (786)
Q Consensus 610 --Dl~ri~~ll~~~~~~df~Vf~G~-De---lLL~aL~~GAdG~Isg~a 652 (786)
.+.++.++.+ ..+.++.++.|. .. .....+.+|+++++.|.+
T Consensus 147 ~~~~~~i~~l~~-~~~~~~~ivdgGI~~~g~~~~~~~~aGad~iV~Gr~ 194 (215)
T PRK13813 147 ATRPERVRYIRS-RLGDELKIISPGIGAQGGKAADAIKAGADYVIVGRS 194 (215)
T ss_pred CCcchhHHHHHH-hcCCCcEEEeCCcCCCCCCHHHHHHcCCCEEEECcc
Confidence 5676666654 333455555343 22 256778899999999865
No 77
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=88.11 E-value=18 Score=39.07 Aligned_cols=67 Identities=18% Similarity=0.220 Sum_probs=52.8
Q ss_pred CCeEEEeCCCCCHHHHHHHHHHHHHcC--CCEEEE--cCCCCCCCC----CCHHHHHHHHHHHHhcCCCCEEEEe
Q psy11975 514 QADLLKPQKHTTTRATIDLTQKAAKAG--ANAALI--LCPYYFQKK----MTEDLIYEHFISVADNSPIPVIIYN 580 (786)
Q Consensus 514 RVPVIaGVGa~ST~EAIELAr~Ae~aG--ADAVmV--iPPyY~kps----~S~eeLv~YFraIAeAtdLPIiLYN 580 (786)
..||++.+.+.+.++.++.++.++++| ||++-+ ..|.....+ .+.+.+.+.+++|.+++++||++==
T Consensus 90 ~~pl~~qi~g~~~~~~~~~a~~~~~~~~~~d~ielN~~cP~~~~~g~~l~~~~~~~~eiv~~vr~~~~~pv~vKi 164 (300)
T TIGR01037 90 PTPLIASVYGSSVEEFAEVAEKLEKAPPYVDAYELNLSCPHVKGGGIAIGQDPELSADVVKAVKDKTDVPVFAKL 164 (300)
T ss_pred CCcEEEEeecCCHHHHHHHHHHHHhccCccCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhcCCCEEEEC
Confidence 368999999999999999999999874 999987 445542211 2478889999999988899988654
No 78
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=87.82 E-value=13 Score=40.41 Aligned_cols=128 Identities=13% Similarity=0.059 Sum_probs=85.5
Q ss_pred CCeEEE-eCCCCCHHHHHHHHHHHHHcC-------CCEE---EEcCCCCCCCCCCHHHHHHHHHHHHhcCCCCEEEEeCC
Q psy11975 514 QADLLK-PQKHTTTRATIDLTQKAAKAG-------ANAA---LILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNT 582 (786)
Q Consensus 514 RVPVIa-GVGa~ST~EAIELAr~Ae~aG-------ADAV---mViPPyY~kps~S~eeLv~YFraIAeAtdLPIiLYNiP 582 (786)
++.++. -.|+.+.+||+..|+.|.+++ -+.| ++-.|.|..|+ ..+.++--+.+.+ =+.-|+-|-+|
T Consensus 70 ~~~~LPNTaGc~tA~EAv~~A~laRe~~~~~~~~~~~wIKLEVi~D~~~LlPD--~~etl~Aae~Lv~-eGF~VlPY~~~ 146 (267)
T CHL00162 70 KLWLLPNTAGCQTAEEAIRMAFLGRELAKQLGQEDNNFVKLEVISDPKYLLPD--PIGTLKAAEFLVK-KGFTVLPYINA 146 (267)
T ss_pred ccEECCcCcCCCCHHHHHHHHHHHHHHhccccccCCCeEEEEEeCCCcccCCC--hHHHHHHHHHHHH-CCCEEeecCCC
Confidence 344554 456788999999999999986 4444 34467888887 8888888888874 35677777655
Q ss_pred CCcCCccCHHHHHHHHhCCCEEEEEeC----------CHHHHHHHHhhcCCCCEEEEeCCc----chhhhhhccCCcccc
Q psy11975 583 FVTNIDISVDTLVKLAHHENIRGVKDT----------DNIKLANMANQTKDLNFSVFAGSA----GYLLSGLLVGCAGGI 648 (786)
Q Consensus 583 ~~TGv~LSpelL~rLAeiPNVVGIKDS----------Dl~ri~~ll~~~~~~df~Vf~G~D----elLL~aL~~GAdG~I 648 (786)
. +-+-++|.+..-.+=+--. +...++.+++ ..++.|+.+.. +....++.+|++|+.
T Consensus 147 D-------~v~a~rLed~Gc~aVMPlgsPIGSg~Gl~n~~~l~~i~e---~~~vpVivdAGIgt~sDa~~AmElGaDgVL 216 (267)
T CHL00162 147 D-------PMLAKHLEDIGCATVMPLGSPIGSGQGLQNLLNLQIIIE---NAKIPVIIDAGIGTPSEASQAMELGASGVL 216 (267)
T ss_pred C-------HHHHHHHHHcCCeEEeeccCcccCCCCCCCHHHHHHHHH---cCCCcEEEeCCcCCHHHHHHHHHcCCCEEe
Confidence 3 5566777654332222221 5566665655 34566666543 346778999999998
Q ss_pred cccccc
Q psy11975 649 NALSAV 654 (786)
Q Consensus 649 sg~aN~ 654 (786)
..++-+
T Consensus 217 ~nSaIa 222 (267)
T CHL00162 217 LNTAVA 222 (267)
T ss_pred ecceee
Confidence 887644
No 79
>PRK09549 mtnW 2,3-diketo-5-methylthiopentyl-1-phosphate enolase; Reviewed
Probab=87.79 E-value=9.5 Score=43.88 Aligned_cols=112 Identities=18% Similarity=0.160 Sum_probs=64.2
Q ss_pred ccCCCCeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHh--cCCCCEEEEeCCCCcC-
Q psy11975 510 EREWQADLLKPQKHTTTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVAD--NSPIPVIIYNNTFVTN- 586 (786)
Q Consensus 510 evaGRVPVIaGVGa~ST~EAIELAr~Ae~aGADAVmViPPyY~kps~S~eeLv~YFraIAe--AtdLPIiLYNiP~~TG- 586 (786)
+++.+.-..+++++. +.+.++.++.|+++|+.++|+.+-.+ .. .-++.+++ ..++||..+- ...|
T Consensus 198 eTG~~~~y~~NiT~~-~~em~~ra~~a~~~G~~~~m~~~~~~-G~--------~al~~l~~~~~~~lpIhaHr--a~~ga 265 (407)
T PRK09549 198 TTGHKTLYAVNLTGR-TFELKEKAKRAAEAGADALLFNVFAY-GL--------DVLQSLAEDPEIPVPIMAHP--AVSGA 265 (407)
T ss_pred hhCCcceEEEecCCC-HHHHHHHHHHHHHcCCCeEEEecccc-ch--------HHHHHHHhcCCCCcEEEecC--Ccccc
Confidence 344555566799875 78999999999999999999986333 11 22445555 3467765432 2222
Q ss_pred ------CccCHH----HHHHHH--h---CCCEEEEEeC-CHHHHHHH---Hhhc---CCCCEEEEeCCcc
Q psy11975 587 ------IDISVD----TLVKLA--H---HENIRGVKDT-DNIKLANM---ANQT---KDLNFSVFAGSAG 634 (786)
Q Consensus 587 ------v~LSpe----lL~rLA--e---iPNVVGIKDS-Dl~ri~~l---l~~~---~~~df~Vf~G~De 634 (786)
..++.. .|.||+ + +|++ +=|.. +.+.+.++ +++. ..+-|-|..|.-.
T Consensus 266 ~~r~~~~Gis~~~~l~kl~RLaGaD~~~~~~~-~Gk~~~~~~~~~~~~~~~~~~~~~~k~~~Pv~sGG~~ 334 (407)
T PRK09549 266 YTPSPLYGISSPLLLGKLLRYAGADFSLFPSP-YGSVALEKEEALAIAKELTEDDDPFKRSFPVPSAGIH 334 (407)
T ss_pred cccCCCCcCcHHHHHHHHHHHcCCCccccCCC-cCCcCCCHHHHHHHHHHHhccccCCCccEEeecCCCC
Confidence 234443 345555 2 3666 44666 54443333 3311 0223667776643
No 80
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=87.74 E-value=9.8 Score=39.25 Aligned_cols=117 Identities=9% Similarity=-0.005 Sum_probs=66.8
Q ss_pred HHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHhcCCCCEEEEeCCCCcCCccCHHHHHHHHhC-CCEEEE--
Q psy11975 530 IDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHH-ENIRGV-- 606 (786)
Q Consensus 530 IELAr~Ae~aGADAVmViPPyY~kps~S~eeLv~YFraIAeAtdLPIiLYNiP~~TGv~LSpelL~rLAei-PNVVGI-- 606 (786)
.+.++.|.++|||.|++..|.-..+. .+.+.++++.+-+..++|++.-. .+.+.+.++.+. ..++++
T Consensus 78 ~~~v~~a~~aGad~I~~d~~~~~~p~--~~~~~~~i~~~~~~~~i~vi~~v--------~t~ee~~~a~~~G~d~i~~~~ 147 (221)
T PRK01130 78 LKEVDALAAAGADIIALDATLRPRPD--GETLAELVKRIKEYPGQLLMADC--------STLEEGLAAQKLGFDFIGTTL 147 (221)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCCCCC--CCCHHHHHHHHHhCCCCeEEEeC--------CCHHHHHHHHHcCCCEEEcCC
Confidence 35678999999998888776543332 13333444443322567877521 255666666543 223322
Q ss_pred ---------EeC-CHHHHHHHHhhcCCCCEEEEeCCc--chhhhhhccCCccccccccccccH
Q psy11975 607 ---------KDT-DNIKLANMANQTKDLNFSVFAGSA--GYLLSGLLVGCAGGINALSAVLGG 657 (786)
Q Consensus 607 ---------KDS-Dl~ri~~ll~~~~~~df~Vf~G~D--elLL~aL~~GAdG~Isg~aN~~Pe 657 (786)
... +...+.++... .+-.+-.-.|-. +.+...+..|++|++.|.+-+-|+
T Consensus 148 ~g~t~~~~~~~~~~~~~i~~i~~~-~~iPvia~GGI~t~~~~~~~l~~GadgV~iGsai~~~~ 209 (221)
T PRK01130 148 SGYTEETKKPEEPDFALLKELLKA-VGCPVIAEGRINTPEQAKKALELGAHAVVVGGAITRPE 209 (221)
T ss_pred ceeecCCCCCCCcCHHHHHHHHHh-CCCCEEEECCCCCHHHHHHHHHCCCCEEEEchHhcCCH
Confidence 112 56666666552 232344444442 346677889999999997654443
No 81
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=87.72 E-value=5.6 Score=44.26 Aligned_cols=91 Identities=10% Similarity=0.051 Sum_probs=57.3
Q ss_pred CCCHHHHHHHHHHHHHcC-CCEEEEcCCCCCCC--------C-C-CHHHHHHHHHHHHhcCCCCEEEEeCCCCcCCccCH
Q psy11975 523 HTTTRATIDLTQKAAKAG-ANAALILCPYYFQK--------K-M-TEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISV 591 (786)
Q Consensus 523 a~ST~EAIELAr~Ae~aG-ADAVmViPPyY~kp--------s-~-S~eeLv~YFraIAeAtdLPIiLYNiP~~TGv~LSp 591 (786)
+.+.+|++++++..+++| +|.+-|....+... + . ...-..++.+.|.+++++||++ +|.-.++
T Consensus 224 G~~~~e~~~~~~~l~~~G~vd~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~ipvi~------~G~i~~~ 297 (343)
T cd04734 224 GLSPDEALEIAARLAAEGLIDYVNVSAGSYYTLLGLAHVVPSMGMPPGPFLPLAARIKQAVDLPVFH------AGRIRDP 297 (343)
T ss_pred CCCHHHHHHHHHHHHhcCCCCEEEeCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHcCCCEEe------eCCCCCH
Confidence 357899999999999998 89998854322111 0 0 0112355667777777888775 3444578
Q ss_pred HHHHHHHhCCCEEEEEeC-----CHHHHHHHHh
Q psy11975 592 DTLVKLAHHENIRGVKDT-----DNIKLANMAN 619 (786)
Q Consensus 592 elL~rLAeiPNVVGIKDS-----Dl~ri~~ll~ 619 (786)
+...++.+...+-+|=.. |++-+.++.+
T Consensus 298 ~~~~~~l~~~~~D~V~~gR~~ladP~l~~k~~~ 330 (343)
T cd04734 298 AEAEQALAAGHADMVGMTRAHIADPHLVAKARE 330 (343)
T ss_pred HHHHHHHHcCCCCeeeecHHhHhCccHHHHHHc
Confidence 888888765544333333 5555555543
No 82
>KOG1819|consensus
Probab=87.66 E-value=0.3 Score=56.19 Aligned_cols=28 Identities=50% Similarity=0.998 Sum_probs=21.1
Q ss_pred CCCCCCCCCCCCCCcccccccccCCCCC
Q psy11975 203 SHHHSHHHRSHSHHHHQSQSKHHHSKPL 230 (786)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (786)
+|.|-||.|+|+||||.....|.|..|-
T Consensus 567 shshrhhqrhhhhhhhrhphqhqhrqph 594 (990)
T KOG1819|consen 567 SHSHRHHQRHHHHHHHRHPHQHQHRQPH 594 (990)
T ss_pred ccccchhhhccccccccCcchhcccCCC
Confidence 6777888888888887777777776664
No 83
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=87.63 E-value=8.9 Score=41.41 Aligned_cols=129 Identities=10% Similarity=0.025 Sum_probs=85.5
Q ss_pred CCeEEE-eCCCCCHHHHHHHHHHHHHcC-CCEE---EEcCCCCCCCCCCHHHHHHHHHHHHhcCCCCEEEEeCCCCcCCc
Q psy11975 514 QADLLK-PQKHTTTRATIDLTQKAAKAG-ANAA---LILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNID 588 (786)
Q Consensus 514 RVPVIa-GVGa~ST~EAIELAr~Ae~aG-ADAV---mViPPyY~kps~S~eeLv~YFraIAeAtdLPIiLYNiP~~TGv~ 588 (786)
++.++. -.|+.+.+||+..|+.|.+++ -|.| ++-.|.|..|. ..+.++-.+.+.+. ++-++-|=.+
T Consensus 62 ~~~~lpNTaG~~ta~eAv~~a~lare~~~~~~iKlEVi~d~~~Llpd--~~~tv~aa~~L~~~-Gf~vlpyc~d------ 132 (248)
T cd04728 62 GYTLLPNTAGCRTAEEAVRTARLAREALGTDWIKLEVIGDDKTLLPD--PIETLKAAEILVKE-GFTVLPYCTD------ 132 (248)
T ss_pred CCEECCCCCCCCCHHHHHHHHHHHHHHhCCCeEEEEEecCccccccC--HHHHHHHHHHHHHC-CCEEEEEeCC------
Confidence 445555 456789999999999999984 4554 34448887776 88888888887643 5655545443
Q ss_pred cCHHHHHHHHhC------C--CEEEEEeC--CHHHHHHHHhhcCCCCEEEEeCCc----chhhhhhccCCcccccccccc
Q psy11975 589 ISVDTLVKLAHH------E--NIRGVKDT--DNIKLANMANQTKDLNFSVFAGSA----GYLLSGLLVGCAGGINALSAV 654 (786)
Q Consensus 589 LSpelL~rLAei------P--NVVGIKDS--Dl~ri~~ll~~~~~~df~Vf~G~D----elLL~aL~~GAdG~Isg~aN~ 654 (786)
++.+.++|++. | ..+|=.-. +.+.+..+.+. .++.|+.+.. +....++.+|++|++.+++-.
T Consensus 133 -d~~~ar~l~~~G~~~vmPlg~pIGsg~Gi~~~~~I~~I~e~---~~vpVI~egGI~tpeda~~AmelGAdgVlV~SAIt 208 (248)
T cd04728 133 -DPVLAKRLEDAGCAAVMPLGSPIGSGQGLLNPYNLRIIIER---ADVPVIVDAGIGTPSDAAQAMELGADAVLLNTAIA 208 (248)
T ss_pred -CHHHHHHHHHcCCCEeCCCCcCCCCCCCCCCHHHHHHHHHh---CCCcEEEeCCCCCHHHHHHHHHcCCCEEEEChHhc
Confidence 25666666642 3 44552222 66666666552 3455665442 356778999999999998765
Q ss_pred c
Q psy11975 655 L 655 (786)
Q Consensus 655 ~ 655 (786)
-
T Consensus 209 ~ 209 (248)
T cd04728 209 K 209 (248)
T ss_pred C
Confidence 4
No 84
>TIGR00742 yjbN tRNA dihydrouridine synthase A. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=87.45 E-value=38 Score=37.61 Aligned_cols=152 Identities=11% Similarity=0.098 Sum_probs=92.7
Q ss_pred CCeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEcC--CCCCCC----C----CCHHHHHHHHHHHHhcCCCCEEEEeCCC
Q psy11975 514 QADLLKPQKHTTTRATIDLTQKAAKAGANAALILC--PYYFQK----K----MTEDLIYEHFISVADNSPIPVIIYNNTF 583 (786)
Q Consensus 514 RVPVIaGVGa~ST~EAIELAr~Ae~aGADAVmViP--PyY~kp----s----~S~eeLv~YFraIAeAtdLPIiLYNiP~ 583 (786)
..|+++++.+.+.++..+.|+.+++.|+|+|=+-- |.-... + .+.+-+.+-.+++-+++++||.+==-.+
T Consensus 54 e~p~~vQl~g~~p~~~~~aA~~~~~~g~d~IDlN~GCP~~~v~~~g~Gs~Ll~~p~~~~~iv~av~~~~~~PVsvKiR~g 133 (318)
T TIGR00742 54 ESPVALQLGGSDPNDLAKCAKIAEKRGYDEINLNVGCPSDRVQNGNFGACLMGNADLVADCVKAMQEAVNIPVTVKHRIG 133 (318)
T ss_pred CCcEEEEEccCCHHHHHHHHHHHHhCCCCEEEEECCCCHHHhCCCCeehHhhcCHHHHHHHHHHHHHHhCCCeEEEEecC
Confidence 45899999999999999999999999999986543 332110 0 1577788999999988899988654322
Q ss_pred CcCCccCHH----HHHHHHh--------CCCE---EEEE--e---C---CHHHHHHHHhhcCCCCEEE-EeCCcch---h
Q psy11975 584 VTNIDISVD----TLVKLAH--------HENI---RGVK--D---T---DNIKLANMANQTKDLNFSV-FAGSAGY---L 636 (786)
Q Consensus 584 ~TGv~LSpe----lL~rLAe--------iPNV---VGIK--D---S---Dl~ri~~ll~~~~~~df~V-f~G~Del---L 636 (786)
....+ +.+ .+..|.+ |++. .|+. . . |+..+.++.+. . +++.| .+|.=.. +
T Consensus 134 ~~~~~-~~~~~~~~~~~l~~~G~~~itvHgRt~~~qg~sg~~~~~~~~~~~~~i~~vk~~-~-~~ipVi~NGdI~s~~da 210 (318)
T TIGR00742 134 IDPLD-SYEFLCDFVEIVSGKGCQNFIVHARKAWLSGLSPKENREIPPLRYERVYQLKKD-F-PHLTIEINGGIKNSEQI 210 (318)
T ss_pred CCCcc-hHHHHHHHHHHHHHcCCCEEEEeCCchhhcCCCccccccCCchhHHHHHHHHHh-C-CCCcEEEECCcCCHHHH
Confidence 21111 112 2232321 2332 1221 1 0 44555555442 2 24443 4444211 2
Q ss_pred hhhhccCCcccccccccc-ccHHHHHHHHHHHcC
Q psy11975 637 LSGLLVGCAGGINALSAV-LGGPICELYDLAKAG 669 (786)
Q Consensus 637 L~aL~~GAdG~Isg~aN~-~Pel~vaL~eA~~aG 669 (786)
...+ .|++|+|.|-+.+ -|.++.++-+.+..|
T Consensus 211 ~~~l-~g~dgVMigRgal~nP~if~~~~~~l~~~ 243 (318)
T TIGR00742 211 KQHL-SHVDGVMVGREAYENPYLLANVDREIFNE 243 (318)
T ss_pred HHHH-hCCCEEEECHHHHhCCHHHHHHHHHhcCC
Confidence 3334 4999999988765 599999988777644
No 85
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=87.17 E-value=4.7 Score=43.79 Aligned_cols=84 Identities=14% Similarity=0.046 Sum_probs=57.6
Q ss_pred cCCCCeEEEeCC-------CCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCC-------CHHHHHHHHHHHHhcCCCCE
Q psy11975 511 REWQADLLKPQK-------HTTTRATIDLTQKAAKAGANAALILCPYYFQKKM-------TEDLIYEHFISVADNSPIPV 576 (786)
Q Consensus 511 vaGRVPVIaGVG-------a~ST~EAIELAr~Ae~aGADAVmViPPyY~kps~-------S~eeLv~YFraIAeAtdLPI 576 (786)
++.++||.+=+. +.+.++++++++.++++|+|.+-+....+..+.. ......++.+.|.+.+++||
T Consensus 205 ~g~d~~i~vris~~~~~~~g~~~~e~~~la~~l~~~G~d~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~iPV 284 (327)
T cd02803 205 VGPDFPVGVRLSADDFVPGGLTLEEAIEIAKALEEAGVDALHVSGGSYESPPPIIPPPYVPEGYFLELAEKIKKAVKIPV 284 (327)
T ss_pred cCCCceEEEEechhccCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCCCcccccccCCCCCCcchhHHHHHHHHHHCCCCE
Confidence 344567766333 2478999999999999999999888766543210 02334577788888888998
Q ss_pred EEEeCCCCcCCccCHHHHHHHHhC
Q psy11975 577 IIYNNTFVTNIDISVDTLVKLAHH 600 (786)
Q Consensus 577 iLYNiP~~TGv~LSpelL~rLAei 600 (786)
+.- |.-.+++.+.++.+.
T Consensus 285 i~~------Ggi~t~~~a~~~l~~ 302 (327)
T cd02803 285 IAV------GGIRDPEVAEEILAE 302 (327)
T ss_pred EEe------CCCCCHHHHHHHHHC
Confidence 753 333468888887743
No 86
>PRK04208 rbcL ribulose bisophosphate carboxylase; Reviewed
Probab=87.16 E-value=11 Score=44.14 Aligned_cols=91 Identities=13% Similarity=0.047 Sum_probs=58.3
Q ss_pred ccCCCCeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHhcCCCCEEEEeCCCCcC---
Q psy11975 510 EREWQADLLKPQKHTTTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTN--- 586 (786)
Q Consensus 510 evaGRVPVIaGVGa~ST~EAIELAr~Ae~aGADAVmViPPyY~kps~S~eeLv~YFraIAeAtdLPIiLYNiP~~TG--- 586 (786)
+.+.+.-..+++++.++.+.++.++.|+++|+.++|+-+-.+ ..+ .+...++-+...++||..+-. ..|
T Consensus 224 eTG~~k~y~~NiT~~~~~em~~ra~~~~e~G~~~~mv~~~~~-G~~-----~l~~l~~~~~~~~l~IhaHrA--~~ga~~ 295 (468)
T PRK04208 224 ETGERKGHYLNVTAPTMEEMYKRAEFAKELGSPIVMIDVVTA-GWT-----ALQSLREWCRDNGLALHAHRA--MHAAFT 295 (468)
T ss_pred hhCCcceEEEecCCCCHHHHHHHHHHHHHhCCCEEEEecccc-ccH-----HHHHHHHhhhcCCcEEEecCC--cccccc
Confidence 344445557799998899999999999999999999986433 222 244444444456788865533 222
Q ss_pred ----CccCHHHHHHHH-----h---CCCEEEEEeC
Q psy11975 587 ----IDISVDTLVKLA-----H---HENIRGVKDT 609 (786)
Q Consensus 587 ----v~LSpelL~rLA-----e---iPNVVGIKDS 609 (786)
..++..++.+|. + +|++.| |..
T Consensus 296 r~~~~Gis~~vl~Kl~RLaGaD~ih~~t~~G-k~~ 329 (468)
T PRK04208 296 RNPNHGISFRVLAKLLRLIGVDHLHTGTVVG-KLE 329 (468)
T ss_pred cCcCCCCCHHHHHHHHHHcCCCccccCCccC-Ccc
Confidence 235555555554 2 377744 555
No 87
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=87.14 E-value=6.6 Score=40.54 Aligned_cols=117 Identities=12% Similarity=0.060 Sum_probs=68.4
Q ss_pred HHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHhcCCCCEEEEeCCCCcCCccCHHHHHHHHhC-CCEEEEE-
Q psy11975 530 IDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHH-ENIRGVK- 607 (786)
Q Consensus 530 IELAr~Ae~aGADAVmViPPyY~kps~S~eeLv~YFraIAeAtdLPIiLYNiP~~TGv~LSpelL~rLAei-PNVVGIK- 607 (786)
++.++.|.++|||.|++..+....+. .+.+.++++.+.+..++|+++ . ..+++...++.+. ..++++.
T Consensus 82 ~~~~~~a~~aGad~I~~~~~~~~~p~--~~~~~~~i~~~~~~g~~~iiv-~-------v~t~~ea~~a~~~G~d~i~~~~ 151 (219)
T cd04729 82 IEEVDALAAAGADIIALDATDRPRPD--GETLAELIKRIHEEYNCLLMA-D-------ISTLEEALNAAKLGFDIIGTTL 151 (219)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCCCCC--CcCHHHHHHHHHHHhCCeEEE-E-------CCCHHHHHHHHHcCCCEEEccC
Confidence 46889999999998888765443332 235566666665544688776 1 1345565555543 2233221
Q ss_pred --------eC---CHHHHHHHHhhcCCCCEEEEeCCc--chhhhhhccCCccccccccccccH
Q psy11975 608 --------DT---DNIKLANMANQTKDLNFSVFAGSA--GYLLSGLLVGCAGGINALSAVLGG 657 (786)
Q Consensus 608 --------DS---Dl~ri~~ll~~~~~~df~Vf~G~D--elLL~aL~~GAdG~Isg~aN~~Pe 657 (786)
.. ++..+.++.+. .+-.+-.-.|-. +.+...+..|++|++.|.+-+-++
T Consensus 152 ~g~t~~~~~~~~~~~~~l~~i~~~-~~ipvia~GGI~~~~~~~~~l~~GadgV~vGsal~~~~ 213 (219)
T cd04729 152 SGYTEETAKTEDPDFELLKELRKA-LGIPVIAEGRINSPEQAAKALELGADAVVVGSAITRPE 213 (219)
T ss_pred ccccccccCCCCCCHHHHHHHHHh-cCCCEEEeCCCCCHHHHHHHHHCCCCEEEEchHHhChH
Confidence 11 55666666542 233334444442 346677889999999997644333
No 88
>TIGR00222 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase. Members of this family are 3-methyl-2-oxobutanoate hydroxymethyltransferase, the first enzyme of the pantothenate biosynthesis pathway. An alternate name is ketopantoate hydroxymethyltransferase.
Probab=86.79 E-value=4.3 Score=44.08 Aligned_cols=76 Identities=16% Similarity=0.158 Sum_probs=57.9
Q ss_pred HHHHHHHcCCCEEEEcCCC----CCC---CCCCHHHHHHHHHHHHhcCCCCEEEEeCCCCcCCccCHHH----HHHHHhC
Q psy11975 532 LTQKAAKAGANAALILCPY----YFQ---KKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDT----LVKLAHH 600 (786)
Q Consensus 532 LAr~Ae~aGADAVmViPPy----Y~k---ps~S~eeLv~YFraIAeAtdLPIiLYNiP~~TGv~LSpel----L~rLAei 600 (786)
.|+.++++|+|++++..-. +-. ..++-|+++.|-++|+++++.|+++=|.|- .++. +++. ..+|.+.
T Consensus 27 sA~i~~~aG~d~ilvGdSlgm~~lG~~~t~~vtldem~~h~~aV~rg~~~~~vv~DmPf-~sy~-~~e~a~~na~rl~~e 104 (263)
T TIGR00222 27 FAKLFADAGVDVILVGDSLGMVVLGHDSTLPVTVADMIYHTAAVKRGAPNCLIVTDLPF-MSYA-TPEQALKNAARVMQE 104 (263)
T ss_pred HHHHHHHcCCCEEEECccHhHHhcCCCCCCCcCHHHHHHHHHHHHhhCCCceEEeCCCc-CCCC-CHHHHHHHHHHHHHH
Confidence 4678889999999986532 111 125799999999999999999999999995 4554 4555 3445555
Q ss_pred CCEEEEEeC
Q psy11975 601 ENIRGVKDT 609 (786)
Q Consensus 601 PNVVGIKDS 609 (786)
-++.|||.+
T Consensus 105 aGa~aVkiE 113 (263)
T TIGR00222 105 TGANAVKLE 113 (263)
T ss_pred hCCeEEEEc
Confidence 689999999
No 89
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=86.72 E-value=5.5 Score=40.93 Aligned_cols=123 Identities=19% Similarity=0.224 Sum_probs=72.4
Q ss_pred CCCeEEEeCCCCCHH--------HHHHHHHHHHHcCCCEEEEcC-CCCCCCCCCHHHHHHHHHHHHhcCCCCEEEEeCCC
Q psy11975 513 WQADLLKPQKHTTTR--------ATIDLTQKAAKAGANAALILC-PYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTF 583 (786)
Q Consensus 513 GRVPVIaGVGa~ST~--------EAIELAr~Ae~aGADAVmViP-PyY~kps~S~eeLv~YFraIAeAtdLPIiLYNiP~ 583 (786)
|+++||+-+-..|.. +.+++|+.+++.||+++.+.. +.++.-. .+..+.|.+.+++||++-+
T Consensus 9 ~~~~vIae~k~~sp~~~~~~~~~~~~~~A~~~~~~GA~~l~v~~~~~~~~g~------~~~~~~i~~~v~iPi~~~~--- 79 (217)
T cd00331 9 GGLGVIAEVKRASPSKGLIREDFDPVEIAKAYEKAGAAAISVLTEPKYFQGS------LEDLRAVREAVSLPVLRKD--- 79 (217)
T ss_pred CCceEEEEecCCCCCCCcCCCCCCHHHHHHHHHHcCCCEEEEEeCccccCCC------HHHHHHHHHhcCCCEEECC---
Confidence 578899866654444 489999999999999998875 3343332 4667777777799999743
Q ss_pred CcCCccCHHHHHHHHh--CCCEEE-EEeCCHHHHHHHHhhc--CCCCEEEEeCCcchhhhhhccCCccc
Q psy11975 584 VTNIDISVDTLVKLAH--HENIRG-VKDTDNIKLANMANQT--KDLNFSVFAGSAGYLLSGLLVGCAGG 647 (786)
Q Consensus 584 ~TGv~LSpelL~rLAe--iPNVVG-IKDSDl~ri~~ll~~~--~~~df~Vf~G~DelLL~aL~~GAdG~ 647 (786)
.-+++..+..+.+ ...|+- ..+-+...+.++++.. .+-+..+..-..+.+..+...|++..
T Consensus 80 ---~i~~~~~v~~~~~~Gad~v~l~~~~~~~~~~~~~~~~~~~~g~~~~v~v~~~~e~~~~~~~g~~~i 145 (217)
T cd00331 80 ---FIIDPYQIYEARAAGADAVLLIVAALDDEQLKELYELARELGMEVLVEVHDEEELERALALGAKII 145 (217)
T ss_pred ---eecCHHHHHHHHHcCCCEEEEeeccCCHHHHHHHHHHHHHcCCeEEEEECCHHHHHHHHHcCCCEE
Confidence 3455656666654 445532 2222434444443321 22222222222223455666777654
No 90
>PRK00208 thiG thiazole synthase; Reviewed
Probab=86.69 E-value=11 Score=40.70 Aligned_cols=129 Identities=11% Similarity=0.020 Sum_probs=84.5
Q ss_pred CCeEEE-eCCCCCHHHHHHHHHHHHHcCC-CEE---EEcCCCCCCCCCCHHHHHHHHHHHHhcCCCCEEEEeCCCCcCCc
Q psy11975 514 QADLLK-PQKHTTTRATIDLTQKAAKAGA-NAA---LILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNID 588 (786)
Q Consensus 514 RVPVIa-GVGa~ST~EAIELAr~Ae~aGA-DAV---mViPPyY~kps~S~eeLv~YFraIAeAtdLPIiLYNiP~~TGv~ 588 (786)
++.++. -.|+.+.+||+..|+.|.+++- +.| ++-.|+|..+. ..+.++-.+.+.+. ++-++-|=.+
T Consensus 62 ~~~~lpNTaG~~ta~eAv~~a~lare~~~~~~iKlEVi~d~~~llpd--~~~tv~aa~~L~~~-Gf~vlpyc~~------ 132 (250)
T PRK00208 62 GVTLLPNTAGCRTAEEAVRTARLAREALGTNWIKLEVIGDDKTLLPD--PIETLKAAEILVKE-GFVVLPYCTD------ 132 (250)
T ss_pred CCEECCCCCCCCCHHHHHHHHHHHHHHhCCCeEEEEEecCCCCCCcC--HHHHHHHHHHHHHC-CCEEEEEeCC------
Confidence 445555 4567889999999999999754 544 33447777776 88888888887642 5555545433
Q ss_pred cCHHHHHHHHhC------C--CEEEEEeC--CHHHHHHHHhhcCCCCEEEEeCCc----chhhhhhccCCcccccccccc
Q psy11975 589 ISVDTLVKLAHH------E--NIRGVKDT--DNIKLANMANQTKDLNFSVFAGSA----GYLLSGLLVGCAGGINALSAV 654 (786)
Q Consensus 589 LSpelL~rLAei------P--NVVGIKDS--Dl~ri~~ll~~~~~~df~Vf~G~D----elLL~aL~~GAdG~Isg~aN~ 654 (786)
++.+.++|++. | ..+|=.-. +.+.+..+.+ . .++.|+.+.. +....++.+|++|++.+++-.
T Consensus 133 -d~~~ak~l~~~G~~~vmPlg~pIGsg~gi~~~~~i~~i~e-~--~~vpVIveaGI~tpeda~~AmelGAdgVlV~SAIt 208 (250)
T PRK00208 133 -DPVLAKRLEEAGCAAVMPLGAPIGSGLGLLNPYNLRIIIE-Q--ADVPVIVDAGIGTPSDAAQAMELGADAVLLNTAIA 208 (250)
T ss_pred -CHHHHHHHHHcCCCEeCCCCcCCCCCCCCCCHHHHHHHHH-h--cCCeEEEeCCCCCHHHHHHHHHcCCCEEEEChHhh
Confidence 25666666642 3 45552222 6666666655 2 3556665543 346778999999999998765
Q ss_pred c
Q psy11975 655 L 655 (786)
Q Consensus 655 ~ 655 (786)
-
T Consensus 209 k 209 (250)
T PRK00208 209 V 209 (250)
T ss_pred C
Confidence 4
No 91
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=86.17 E-value=5.8 Score=41.61 Aligned_cols=117 Identities=16% Similarity=0.218 Sum_probs=78.1
Q ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEcCCCC-CCCCCCHHHHHHHHHHHHhcC-CCCEEE-EeCCCCcCCccCHHHHHHHH
Q psy11975 522 KHTTTRATIDLTQKAAKAGANAALILCPYY-FQKKMTEDLIYEHFISVADNS-PIPVII-YNNTFVTNIDISVDTLVKLA 598 (786)
Q Consensus 522 Ga~ST~EAIELAr~Ae~aGADAVmViPPyY-~kps~S~eeLv~YFraIAeAt-dLPIiL-YNiP~~TGv~LSpelL~rLA 598 (786)
|...++.-+..++.|.+.|||.|-++.++- ++.+ ..+.+.+-.++|.+++ ++|+.+ +. ++. |+.+.+.+++
T Consensus 65 G~~~~~~K~~E~~~Av~~GAdEiDvv~n~g~l~~g-~~~~v~~ei~~i~~~~~g~~lKvIlE----~~~-L~~~ei~~a~ 138 (211)
T TIGR00126 65 GASTTDVKLYETKEAIKYGADEVDMVINIGALKDG-NEEVVYDDIRAVVEACAGVLLKVIIE----TGL-LTDEEIRKAC 138 (211)
T ss_pred CCCcHHHHHHHHHHHHHcCCCEEEeecchHhhhCC-cHHHHHHHHHHHHHHcCCCeEEEEEe----cCC-CCHHHHHHHH
Confidence 567788889999999999999999998864 3433 5888899999999888 577765 32 454 7777766655
Q ss_pred h---CCCEEEEEeC--------CHHHHHHHHhhcCC--CCEEEEeCCcc--hhhhhhccCCc
Q psy11975 599 H---HENIRGVKDT--------DNIKLANMANQTKD--LNFSVFAGSAG--YLLSGLLVGCA 645 (786)
Q Consensus 599 e---iPNVVGIKDS--------Dl~ri~~ll~~~~~--~df~Vf~G~De--lLL~aL~~GAd 645 (786)
+ .-..-.||-+ .+..+..+.+ ..+ -.+..-.|--. .++..+.+|++
T Consensus 139 ~ia~eaGADfvKTsTGf~~~gat~~dv~~m~~-~v~~~v~IKaaGGirt~~~a~~~i~aGa~ 199 (211)
T TIGR00126 139 EICIDAGADFVKTSTGFGAGGATVEDVRLMRN-TVGDTIGVKASGGVRTAEDAIAMIEAGAS 199 (211)
T ss_pred HHHHHhCCCEEEeCCCCCCCCCCHHHHHHHHH-HhccCCeEEEeCCCCCHHHHHHHHHHhhH
Confidence 3 3567788876 2344443333 222 23444545432 35566667765
No 92
>COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism]
Probab=86.16 E-value=8 Score=42.58 Aligned_cols=143 Identities=15% Similarity=0.124 Sum_probs=84.5
Q ss_pred CCeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEcC---------CCCCCCCCCHHHHHHHHHHHHhcCCCCEEEEeCCCC
Q psy11975 514 QADLLKPQKHTTTRATIDLTQKAAKAGANAALILC---------PYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFV 584 (786)
Q Consensus 514 RVPVIaGVGa~ST~EAIELAr~Ae~aGADAVmViP---------PyY~kps~S~eeLv~YFraIAeAtdLPIiLYNiP~~ 584 (786)
+.-++.|+-.. --|+.|+++|..|+-+.. |-+.. .+-++++...++|+++++|||++==--+
T Consensus 18 ~~~~~pg~~d~------~sA~la~~aGF~al~~sg~~vA~slG~pD~~~--~t~~e~~~~vrrI~~a~~lPv~vD~dtG- 88 (289)
T COG2513 18 DPLVLPGAWDA------GSALLAERAGFKALYLSGAGVAASLGLPDLGI--TTLDEVLADARRITDAVDLPVLVDIDTG- 88 (289)
T ss_pred CCEEecCCcCH------HHHHHHHHcCCeEEEeccHHHHHhcCCCcccc--ccHHHHHHHHHHHHhhcCCceEEeccCC-
Confidence 44566677663 347788999999997765 22222 2589999999999999999999854322
Q ss_pred cCCccCHH-HHHHHHhCCCEEEEEeC-----------------CH----HHHHHHHhhcCCCCEEEEeCCcchhhh----
Q psy11975 585 TNIDISVD-TLVKLAHHENIRGVKDT-----------------DN----IKLANMANQTKDLNFSVFAGSAGYLLS---- 638 (786)
Q Consensus 585 TGv~LSpe-lL~rLAeiPNVVGIKDS-----------------Dl----~ri~~ll~~~~~~df~Vf~G~DelLL~---- 638 (786)
.|..+... ++.+|. --+++|+-.+ +. .++....+...+++|.|..=.|..+..
T Consensus 89 fG~~~nvartV~~~~-~aG~agi~iEDq~~pk~cgh~~gk~l~~~~e~v~rIkAa~~a~~~~~fvi~ARTda~~~~~ld~ 167 (289)
T COG2513 89 FGEALNVARTVRELE-QAGAAGIHIEDQVGPKRCGHLPGKELVSIDEMVDRIKAAVEARRDPDFVIIARTDALLVEGLDD 167 (289)
T ss_pred CCcHHHHHHHHHHHH-HcCcceeeeeecccchhcCCCCCCCcCCHHHHHHHHHHHHHhccCCCeEEEeehHHHHhccHHH
Confidence 33344443 333333 2345544333 22 444445443334677665544444333
Q ss_pred -------hhccCCccccccccccccHHHHHHHHHHH
Q psy11975 639 -------GLLVGCAGGINALSAVLGGPICELYDLAK 667 (786)
Q Consensus 639 -------aL~~GAdG~Isg~aN~~Pel~vaL~eA~~ 667 (786)
...+|+|++..-.-+ -++.+.++.+++.
T Consensus 168 AI~Ra~AY~eAGAD~if~~al~-~~e~i~~f~~av~ 202 (289)
T COG2513 168 AIERAQAYVEAGADAIFPEALT-DLEEIRAFAEAVP 202 (289)
T ss_pred HHHHHHHHHHcCCcEEccccCC-CHHHHHHHHHhcC
Confidence 234788877554432 2566666666654
No 93
>PRK11320 prpB 2-methylisocitrate lyase; Provisional
Probab=86.06 E-value=6.6 Score=43.22 Aligned_cols=62 Identities=18% Similarity=0.162 Sum_probs=41.6
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHhcCCCCEEE--EeCCCCcCCccCHHHHHHH
Q psy11975 524 TTTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVII--YNNTFVTNIDISVDTLVKL 597 (786)
Q Consensus 524 ~ST~EAIELAr~Ae~aGADAVmViPPyY~kps~S~eeLv~YFraIAeAtdLPIiL--YNiP~~TGv~LSpelL~rL 597 (786)
...+|+|+.++.++++|||+|.+-.+- +.+++.+ ++++.++|+++ ...+. + -.++.+.|.+|
T Consensus 163 ~g~deAI~Ra~aY~eAGAD~ifi~~~~------~~~~i~~----~~~~~~~Pl~~n~~~~~~-~-p~~s~~~L~~l 226 (292)
T PRK11320 163 EGLDAAIERAQAYVEAGADMIFPEAMT------ELEMYRR----FADAVKVPILANITEFGA-T-PLFTTEELASA 226 (292)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEecCCC------CHHHHHH----HHHhcCCCEEEEeccCCC-C-CCCCHHHHHHc
Confidence 358999999999999999999996532 3555554 45555788744 22221 1 23566776666
No 94
>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=85.97 E-value=56 Score=36.41 Aligned_cols=154 Identities=14% Similarity=0.113 Sum_probs=103.7
Q ss_pred CCCCeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEcC--CC--CCCCC------CCHHHHHHHHHHHHhcCC-CCEEEEe
Q psy11975 512 EWQADLLKPQKHTTTRATIDLTQKAAKAGANAALILC--PY--YFQKK------MTEDLIYEHFISVADNSP-IPVIIYN 580 (786)
Q Consensus 512 aGRVPVIaGVGa~ST~EAIELAr~Ae~aGADAVmViP--Py--Y~kps------~S~eeLv~YFraIAeAtd-LPIiLYN 580 (786)
..-.|+++++++.+.+...+.|+.+++.|+|.|=+=. |. ..+-+ .+++-+.+..+++.++++ +||-+=-
T Consensus 64 ~~e~p~~vQl~gsdp~~l~eaA~~~~~~g~~~IdlN~GCP~~~V~~~g~Ga~Ll~~p~lv~~iv~a~~~av~~iPVTVKi 143 (323)
T COG0042 64 EEERPVAVQLGGSDPELLAEAAKIAEELGADIIDLNCGCPSPKVVKGGAGAALLKNPELLAEIVKAMVEAVGDIPVTVKI 143 (323)
T ss_pred CCCCCEEEEecCCCHHHHHHHHHHHHhcCCCEEeeeCCCChHHhcCCCcchhhcCCHHHHHHHHHHHHHhhCCCCeEEEE
Confidence 4456899999999999999999999999999775532 22 11111 268889999999999995 9998765
Q ss_pred CCCCcCCccC---HHHHHHHHh---C------CCEEEEEeC---CHHHHHHHHhhcCCCCEEE-EeCC--c-chhhhhhc
Q psy11975 581 NTFVTNIDIS---VDTLVKLAH---H------ENIRGVKDT---DNIKLANMANQTKDLNFSV-FAGS--A-GYLLSGLL 641 (786)
Q Consensus 581 iP~~TGv~LS---pelL~rLAe---i------PNVVGIKDS---Dl~ri~~ll~~~~~~df~V-f~G~--D-elLL~aL~ 641 (786)
+.|.+-. ...++++++ . .+-..-++. |++.+.++.+. ... +.| .+|. + +.....|.
T Consensus 144 ---RlG~d~~~~~~~~ia~~~~~~g~~~ltVHgRtr~~~y~~~ad~~~I~~vk~~-~~~-ipvi~NGdI~s~~~a~~~l~ 218 (323)
T COG0042 144 ---RLGWDDDDILALEIARILEDAGADALTVHGRTRAQGYLGPADWDYIKELKEA-VPS-IPVIANGDIKSLEDAKEMLE 218 (323)
T ss_pred ---ecccCcccccHHHHHHHHHhcCCCEEEEecccHHhcCCCccCHHHHHHHHHh-CCC-CeEEeCCCcCCHHHHHHHHH
Confidence 5555322 445666652 2 222233333 78888888763 332 443 4443 1 22445565
Q ss_pred -cCCcccccccccc-ccHHHHHHHHHHHcCCH
Q psy11975 642 -VGCAGGINALSAV-LGGPICELYDLAKAGKW 671 (786)
Q Consensus 642 -~GAdG~Isg~aN~-~Pel~vaL~eA~~aGD~ 671 (786)
.|+||+|.|=+.+ .|.++.++ +....|+.
T Consensus 219 ~tg~DgVMigRga~~nP~l~~~i-~~~~~g~~ 249 (323)
T COG0042 219 YTGADGVMIGRGALGNPWLFRQI-DYLETGEL 249 (323)
T ss_pred hhCCCEEEEcHHHccCCcHHHHH-HHhhcCCC
Confidence 5799999987764 79999998 66777763
No 95
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=85.89 E-value=19 Score=38.75 Aligned_cols=122 Identities=11% Similarity=0.088 Sum_probs=72.6
Q ss_pred CCeEEEeCCCCCHH---HHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHhcCCCCEEEEeCCCCcCCccC
Q psy11975 514 QADLLKPQKHTTTR---ATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDIS 590 (786)
Q Consensus 514 RVPVIaGVGa~ST~---EAIELAr~Ae~aGADAVmViPPyY~kps~S~eeLv~YFraIAeAtdLPIiLYNiP~~TGv~LS 590 (786)
.+|++ +-+-.+.- -.-++++.++++|+|++++..= | .++..++++. +++.++..++.-.|. -+
T Consensus 87 ~~plv-~m~Y~Npi~~~G~e~f~~~~~~aGvdgviipDl----p---~ee~~~~~~~-~~~~gl~~i~lv~P~-----T~ 152 (256)
T TIGR00262 87 NIPIG-LLTYYNLIFRKGVEEFYAKCKEVGVDGVLVADL----P---LEESGDLVEA-AKKHGVKPIFLVAPN-----AD 152 (256)
T ss_pred CCCEE-EEEeccHHhhhhHHHHHHHHHHcCCCEEEECCC----C---hHHHHHHHHH-HHHCCCcEEEEECCC-----CC
Confidence 46766 44443431 2356788999999999988731 2 4555555554 466788877777674 34
Q ss_pred HHHHHHHHh-CCCEE---------EEEeC---C-HHHHHHHHhhcCCCCEEEEeCCc----chhhhhhccCCcccccccc
Q psy11975 591 VDTLVKLAH-HENIR---------GVKDT---D-NIKLANMANQTKDLNFSVFAGSA----GYLLSGLLVGCAGGINALS 652 (786)
Q Consensus 591 pelL~rLAe-iPNVV---------GIKDS---D-l~ri~~ll~~~~~~df~Vf~G~D----elLL~aL~~GAdG~Isg~a 652 (786)
.+.+..+++ .+.++ |.+.. + .+.+.++.+ ..+. .|+.|.. +..-.....|++|++.|.+
T Consensus 153 ~eri~~i~~~~~gfiy~vs~~G~TG~~~~~~~~~~~~i~~lr~-~~~~--pi~vgfGI~~~e~~~~~~~~GADgvVvGSa 229 (256)
T TIGR00262 153 DERLKQIAEKSQGFVYLVSRAGVTGARNRAASALNELVKRLKA-YSAK--PVLVGFGISKPEQVKQAIDAGADGVIVGSA 229 (256)
T ss_pred HHHHHHHHHhCCCCEEEEECCCCCCCcccCChhHHHHHHHHHh-hcCC--CEEEeCCCCCHHHHHHHHHcCCCEEEECHH
Confidence 677777774 33233 34322 2 244444433 2222 3444543 3456677899999999975
No 96
>cd08213 RuBisCO_large_III Ribulose bisphosphate carboxylase large chain, Form III. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV , which differ in their taxonomic distribution and subunit composition. Form III is only found in archaea and forms large subunit oligomers (dimers or decamers) that do not include small subunits.
Probab=85.85 E-value=11 Score=43.46 Aligned_cols=89 Identities=15% Similarity=0.057 Sum_probs=55.1
Q ss_pred cCCCCeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHhcCCCCEEEEeCCCCcC----
Q psy11975 511 REWQADLLKPQKHTTTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTN---- 586 (786)
Q Consensus 511 vaGRVPVIaGVGa~ST~EAIELAr~Ae~aGADAVmViPPyY~kps~S~eeLv~YFraIAeAtdLPIiLYNiP~~TG---- 586 (786)
++.+.-..+++++. ++|.++.++.|+++|++++|+-+-.+ ..+ .+...++-+...++||..+-. ..|
T Consensus 196 TG~~~~y~~NiT~~-~~em~~ra~~a~e~G~~~~mv~~~~~-G~~-----~l~~l~~~~~~~~l~ihaHra--~~ga~~r 266 (412)
T cd08213 196 TGERKAYLANITAP-VREMERRAELVADLGGKYVMIDVVVA-GWS-----ALQYLRDLAEDYGLAIHAHRA--MHAAFTR 266 (412)
T ss_pred hCCcceEEEEecCC-HHHHHHHHHHHHHhCCCeEEeecccc-ChH-----HHHHHHHhccccCeEEEECCC--cceeccc
Confidence 44445556799986 99999999999999999999885433 222 233334333345677765432 222
Q ss_pred ---CccCHHHHHHHH-----h---CCCEEEEEeC
Q psy11975 587 ---IDISVDTLVKLA-----H---HENIRGVKDT 609 (786)
Q Consensus 587 ---v~LSpelL~rLA-----e---iPNVVGIKDS 609 (786)
..++..++.+|. + .|++.| |..
T Consensus 267 ~~~~Gis~~~l~kl~RLaGaD~ih~~t~~G-k~~ 299 (412)
T cd08213 267 NPRHGISMLVLAKLYRLIGVDQLHIGTAVG-KME 299 (412)
T ss_pred CCcCcCcHHHHHHHHHHcCCCccccCCccC-CcC
Confidence 234555666654 2 377744 555
No 97
>PLN02433 uroporphyrinogen decarboxylase
Probab=85.48 E-value=16 Score=40.65 Aligned_cols=131 Identities=21% Similarity=0.260 Sum_probs=80.9
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHH----HHHHHHhcC-----CCCEEEEeCCCCcCCccCHHHHH
Q psy11975 525 TTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYE----HFISVADNS-----PIPVIIYNNTFVTNIDISVDTLV 595 (786)
Q Consensus 525 ST~EAIELAr~Ae~aGADAVmViPPyY~kps~S~eeLv~----YFraIAeAt-----dLPIiLYNiP~~TGv~LSpelL~ 595 (786)
.++.++++++...++||+.+.+.-|.-.. ++.+...+ |.++|.++. +.|++++.+ |.. ..+.
T Consensus 177 it~~~~~~~~~~ieaGa~~i~i~d~~~~~--lsp~~f~ef~~P~~k~i~~~i~~~~~~~~~ilh~c----G~~---~~~~ 247 (345)
T PLN02433 177 LTDAVIEYVDYQIDAGAQVVQIFDSWAGH--LSPVDFEEFSKPYLEKIVDEVKARHPDVPLILYAN----GSG---GLLE 247 (345)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEecCcccc--CCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEeC----CCH---HHHH
Confidence 46778889998889999999888774332 34666654 446777665 367788764 332 5677
Q ss_pred HHHhCC-CEEEEEeC-CHHHHHHHHhhcCCCCEEE--------EeCCcch----hhhhhc-cCCcccccccccccc----
Q psy11975 596 KLAHHE-NIRGVKDT-DNIKLANMANQTKDLNFSV--------FAGSAGY----LLSGLL-VGCAGGINALSAVLG---- 656 (786)
Q Consensus 596 rLAeiP-NVVGIKDS-Dl~ri~~ll~~~~~~df~V--------f~G~Del----LL~aL~-~GAdG~Isg~aN~~P---- 656 (786)
.+++.+ +++++=.. |+....+.+- ++..+ +.|..+. ....+. .|..|+|.+.++-.|
T Consensus 248 ~~~~~~~~~i~~d~~~dl~e~~~~~g----~~~~l~GNi~p~ll~gt~e~i~~~v~~~i~~~~~~g~Il~~Gc~i~~~tp 323 (345)
T PLN02433 248 RLAGTGVDVIGLDWTVDMADARRRLG----SDVAVQGNVDPAVLFGSKEAIEKEVRDVVKKAGPQGHILNLGHGVLVGTP 323 (345)
T ss_pred HHHhcCCCEEEcCCCCCHHHHHHHhC----CCeEEEeCCCchhhCCCHHHHHHHHHHHHHHcCCCCeEEecCCCCCCCCC
Confidence 777754 78887666 8887766543 23332 2333221 112333 345678888776554
Q ss_pred -HHHHHHHHHHHc
Q psy11975 657 -GPICELYDLAKA 668 (786)
Q Consensus 657 -el~vaL~eA~~a 668 (786)
+-+.++++++++
T Consensus 324 ~eNi~a~v~av~~ 336 (345)
T PLN02433 324 EENVAHFFDVARE 336 (345)
T ss_pred HHHHHHHHHHHHH
Confidence 555566666553
No 98
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=85.47 E-value=12 Score=39.17 Aligned_cols=132 Identities=14% Similarity=0.099 Sum_probs=78.8
Q ss_pred EEEeCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHhcCCCCEEEEeCCCCcCCccCHHHHHH
Q psy11975 517 LLKPQKHTTTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVK 596 (786)
Q Consensus 517 VIaGVGa~ST~EAIELAr~Ae~aGADAVmViPPyY~kps~S~eeLv~YFraIAeAtdLPIiLYNiP~~TGv~LSpelL~r 596 (786)
+++|+|.-.+.+ .++.|.++||+.++ .|.+ .++++++.+ ..++|++ | |. .++..+.+
T Consensus 68 ~~vGaGTV~~~~---~~~~a~~aGA~Fiv--sP~~------~~~v~~~~~----~~~i~~i----P---G~-~T~~E~~~ 124 (213)
T PRK06552 68 VLIGAGTVLDAV---TARLAILAGAQFIV--SPSF------NRETAKICN----LYQIPYL----P---GC-MTVTEIVT 124 (213)
T ss_pred eEEeeeeCCCHH---HHHHHHHcCCCEEE--CCCC------CHHHHHHHH----HcCCCEE----C---Cc-CCHHHHHH
Confidence 889999866555 56788899999877 4543 466777744 4566654 4 43 46666666
Q ss_pred HHhC-CCEEEEEe--C--CHHHHHHHHhhcCCCCEEEEeCCcc-hhhhhhccCCccccccccccccHHHHHHHHHHHcCC
Q psy11975 597 LAHH-ENIRGVKD--T--DNIKLANMANQTKDLNFSVFAGSAG-YLLSGLLVGCAGGINALSAVLGGPICELYDLAKAGK 670 (786)
Q Consensus 597 LAei-PNVVGIKD--S--Dl~ri~~ll~~~~~~df~Vf~G~De-lLL~aL~~GAdG~Isg~aN~~Pel~vaL~eA~~aGD 670 (786)
..+. ..++++ + . .+..+..+......-.|-...|-.. .+.+.+.+|++++..+.. ++ ....+||
T Consensus 125 A~~~Gad~vkl-FPa~~~G~~~ik~l~~~~p~ip~~atGGI~~~N~~~~l~aGa~~vavgs~-l~--------~~~~~~~ 194 (213)
T PRK06552 125 ALEAGSEIVKL-FPGSTLGPSFIKAIKGPLPQVNVMVTGGVNLDNVKDWFAAGADAVGIGGE-LN--------KLASQGD 194 (213)
T ss_pred HHHcCCCEEEE-CCcccCCHHHHHHHhhhCCCCEEEEECCCCHHHHHHHHHCCCcEEEEchH-Hh--------CccccCC
Confidence 5543 334444 2 2 5566666654221223444555553 467788899998876654 22 2233677
Q ss_pred HHHHHHHHHHh
Q psy11975 671 WEEAMKLQHRL 681 (786)
Q Consensus 671 ~eeAreLQ~rL 681 (786)
+++-.+.-+++
T Consensus 195 ~~~i~~~a~~~ 205 (213)
T PRK06552 195 FDLITEKAKKY 205 (213)
T ss_pred HHHHHHHHHHH
Confidence 76554443333
No 99
>PLN02424 ketopantoate hydroxymethyltransferase
Probab=85.32 E-value=5.4 Score=44.67 Aligned_cols=78 Identities=19% Similarity=0.204 Sum_probs=59.7
Q ss_pred HHHHHHHHcCCCEEEEcCCCC-----C--CCCCCHHHHHHHHHHHHhcCCCCEEEEeCCCCcCCccCHHHH----HHHHh
Q psy11975 531 DLTQKAAKAGANAALILCPYY-----F--QKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTL----VKLAH 599 (786)
Q Consensus 531 ELAr~Ae~aGADAVmViPPyY-----~--kps~S~eeLv~YFraIAeAtdLPIiLYNiP~~TGv~LSpelL----~rLAe 599 (786)
-.|+.+.++|+|++++....- + ...++-|+++.|.++|+++++.|+++=|+|.. -+..+++.. .+|.+
T Consensus 46 ~sA~i~d~aGvD~ILVGDSlgmv~lG~~~T~~Vtld~mi~H~~aV~Rga~~a~vVaDmPfg-SY~~s~e~av~nA~rl~~ 124 (332)
T PLN02424 46 PSAVHVDSAGIDVCLVGDSAAMVVHGHDTTLPITLDEMLVHCRAVARGANRPLLVGDLPFG-SYESSTDQAVESAVRMLK 124 (332)
T ss_pred HHHHHHHHcCCCEEEECCcHHHHhcCCCCCCCcCHHHHHHHHHHHhccCCCCEEEeCCCCC-CCCCCHHHHHHHHHHHHH
Confidence 356778889999999877541 1 11257999999999999999999999999953 244577664 44444
Q ss_pred CCCEEEEEeC
Q psy11975 600 HENIRGVKDT 609 (786)
Q Consensus 600 iPNVVGIKDS 609 (786)
.-.+.+||.+
T Consensus 125 eaGa~aVKlE 134 (332)
T PLN02424 125 EGGMDAVKLE 134 (332)
T ss_pred HhCCcEEEEC
Confidence 4689999999
No 100
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=85.30 E-value=1.3 Score=46.29 Aligned_cols=135 Identities=16% Similarity=0.157 Sum_probs=83.8
Q ss_pred CCeEEEeCC--CCCHHHH-----HHHHHHHHHcCCCEEEEcCCC-CCCCCCCHHHHHHHHHHHHhcC---CCCEEEEeCC
Q psy11975 514 QADLLKPQK--HTTTRAT-----IDLTQKAAKAGANAALILCPY-YFQKKMTEDLIYEHFISVADNS---PIPVIIYNNT 582 (786)
Q Consensus 514 RVPVIaGVG--a~ST~EA-----IELAr~Ae~aGADAVmViPPy-Y~kps~S~eeLv~YFraIAeAt---dLPIiLYNiP 582 (786)
++.+|++.- ...+..- +..+++|.+.|||+|-++.++ +.+.. ..+...+-.++|.+++ ++|+|+=-.|
T Consensus 56 ~~~~vi~fp~g~~~~~~k~~~~~~~~ve~A~~~GAd~vd~vi~~~~~~~~-~~~~~~~~i~~v~~~~~~~gl~vIlE~~l 134 (236)
T PF01791_consen 56 KVGLVIGFPFGTSTTEPKGYDQIVAEVEEAIRLGADEVDVVINYGALGSG-NEDEVIEEIAAVVEECHKYGLKVILEPYL 134 (236)
T ss_dssp EEEEEESTTTSSSTHHHHTCEEEHHHHHHHHHTT-SEEEEEEEHHHHHTT-HHHHHHHHHHHHHHHHHTSEEEEEEEECE
T ss_pred ccceEEEeCCCCCccccccccchHHHHHHHHHcCCceeeeeccccccccc-cHHHHHHHHHHHHHHHhcCCcEEEEEEec
Confidence 788888775 4466666 799999999999999998765 22332 3677777777777776 6999988443
Q ss_pred CCcCCcc----CHHHHHHHH---hCCCEEEEEeC-C---------HHHHHHHHhhcCCC-C--EEEEeCC------cc--
Q psy11975 583 FVTNIDI----SVDTLVKLA---HHENIRGVKDT-D---------NIKLANMANQTKDL-N--FSVFAGS------AG-- 634 (786)
Q Consensus 583 ~~TGv~L----SpelL~rLA---eiPNVVGIKDS-D---------l~ri~~ll~~~~~~-d--f~Vf~G~------De-- 634 (786)
++..+ .++.+...+ ..-+.-.||-+ . ...+.++.+....+ + +.+-.|. +.
T Consensus 135 --~~~~~~~~~~~~~I~~a~ria~e~GaD~vKt~tg~~~~~t~~~~~~~~~~~~~~~~p~~~~Vk~sGGi~~~~~~~~l~ 212 (236)
T PF01791_consen 135 --RGEEVADEKKPDLIARAARIAAELGADFVKTSTGKPVGATPEDVELMRKAVEAAPVPGKVGVKASGGIDAEDFLRTLE 212 (236)
T ss_dssp --CHHHBSSTTHHHHHHHHHHHHHHTT-SEEEEE-SSSSCSHHHHHHHHHHHHHTHSSTTTSEEEEESSSSHHHHHHSHH
T ss_pred --CchhhcccccHHHHHHHHHHHHHhCCCEEEecCCccccccHHHHHHHHHHHHhcCCCcceEEEEeCCCChHHHHHHHH
Confidence 33332 344454444 23566667765 3 45566665522212 2 5555555 22
Q ss_pred hhhhhhccCC--ccccccc
Q psy11975 635 YLLSGLLVGC--AGGINAL 651 (786)
Q Consensus 635 lLL~aL~~GA--dG~Isg~ 651 (786)
.....+.+|+ .|++.|-
T Consensus 213 ~a~~~i~aGa~~~G~~~Gr 231 (236)
T PF01791_consen 213 DALEFIEAGADRIGTSSGR 231 (236)
T ss_dssp HHHHHHHTTHSEEEEEEHH
T ss_pred HHHHHHHcCChhHHHHHHH
Confidence 1334458999 8887774
No 101
>PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B ....
Probab=85.24 E-value=2.9 Score=44.56 Aligned_cols=92 Identities=15% Similarity=0.134 Sum_probs=59.5
Q ss_pred CCCCHHHHHHHHHhCCCCCccCCCccccccCCCCCCCCCCCCCccccCCCCeEEEeCCC-----CCHHHHHHHHHHHHHc
Q psy11975 465 TSMPIQKRKSLLRKFPLWPELEPSTSELKRSDRPMSVGPRSVRPSEREWQADLLKPQKH-----TTTRATIDLTQKAAKA 539 (786)
Q Consensus 465 ~sLT~dER~~Lle~~~~wve~~a~~~e~~~~~~~~~~~~r~v~veevaGRVPVIaGVGa-----~ST~EAIELAr~Ae~a 539 (786)
.-++.+|..+=+++ .+++.. +.++-|++=+-+ ...+|+|+.++.+.++
T Consensus 115 ~l~~~ee~~~kI~A---a~~a~~------------------------~~~~~I~ARTDa~~~~~~~~deaI~R~~aY~eA 167 (238)
T PF13714_consen 115 QLVSPEEMVAKIRA---AVDARR------------------------DPDFVIIARTDAFLRAEEGLDEAIERAKAYAEA 167 (238)
T ss_dssp -B--HHHHHHHHHH---HHHHHS------------------------STTSEEEEEECHHCHHHHHHHHHHHHHHHHHHT
T ss_pred ceeCHHHHHHHHHH---HHHhcc------------------------CCeEEEEEeccccccCCCCHHHHHHHHHHHHHc
Confidence 34588888887777 443221 112556665444 5789999999999999
Q ss_pred CCCEEEEcCCCCCCCCCCHHHHHHHHHHHHhcCCCCEEEEeCCCCcCCccCHHHHHHH
Q psy11975 540 GANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKL 597 (786)
Q Consensus 540 GADAVmViPPyY~kps~S~eeLv~YFraIAeAtdLPIiLYNiP~~TGv~LSpelL~rL 597 (786)
|||+|++..+ . +.+++.++.+++ +.|+.+---| ..++.+.|.+|
T Consensus 168 GAD~ifi~~~----~--~~~~i~~~~~~~----~~Pl~v~~~~----~~~~~~eL~~l 211 (238)
T PF13714_consen 168 GADMIFIPGL----Q--SEEEIERIVKAV----DGPLNVNPGP----GTLSAEELAEL 211 (238)
T ss_dssp T-SEEEETTS----S--SHHHHHHHHHHH----SSEEEEETTS----SSS-HHHHHHT
T ss_pred CCCEEEeCCC----C--CHHHHHHHHHhc----CCCEEEEcCC----CCCCHHHHHHC
Confidence 9999998765 2 366666655555 5887665533 23888888887
No 102
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=85.18 E-value=9.5 Score=42.14 Aligned_cols=86 Identities=12% Similarity=0.072 Sum_probs=55.3
Q ss_pred CCeEEE--eCCCCCHHHHHHHHHHHHHcCCCEEEEcCCC----CCCCCCCHHHHHHHHHHHHhcCCCCEEEEeCCCCcCC
Q psy11975 514 QADLLK--PQKHTTTRATIDLTQKAAKAGANAALILCPY----YFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNI 587 (786)
Q Consensus 514 RVPVIa--GVGa~ST~EAIELAr~Ae~aGADAVmViPPy----Y~kps~S~eeLv~YFraIAeAtdLPIiLYNiP~~TGv 587 (786)
++||.+ .+|....++++++++.++++|+|++.|.+=. |..+. - =.+++++|.+++++||+ +| |-
T Consensus 133 ~~pVsvKiR~g~~~~~~~~~~a~~l~~~Gvd~i~Vh~Rt~~~~y~g~~---~-~~~~i~~ik~~~~iPVi-~n-----Gd 202 (312)
T PRK10550 133 HLPVTVKVRLGWDSGERKFEIADAVQQAGATELVVHGRTKEDGYRAEH---I-NWQAIGEIRQRLTIPVI-AN-----GE 202 (312)
T ss_pred CcceEEEEECCCCCchHHHHHHHHHHhcCCCEEEECCCCCccCCCCCc---c-cHHHHHHHHhhcCCcEE-Ee-----CC
Confidence 467776 3555556779999999999999999997632 22211 0 13677778877788864 33 44
Q ss_pred ccCHHHHHHHHhCCCEEEEEeC
Q psy11975 588 DISVDTLVKLAHHENIRGVKDT 609 (786)
Q Consensus 588 ~LSpelL~rLAeiPNVVGIKDS 609 (786)
-.+++...++.+...+-||=..
T Consensus 203 I~t~~da~~~l~~~g~DgVmiG 224 (312)
T PRK10550 203 IWDWQSAQQCMAITGCDAVMIG 224 (312)
T ss_pred cCCHHHHHHHHhccCCCEEEEc
Confidence 4577777776654444444333
No 103
>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds. Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).
Probab=84.94 E-value=2.6 Score=45.00 Aligned_cols=72 Identities=13% Similarity=0.122 Sum_probs=49.8
Q ss_pred CeEEEeCCC------------------CCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHhcCCCCE
Q psy11975 515 ADLLKPQKH------------------TTTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPV 576 (786)
Q Consensus 515 VPVIaGVGa------------------~ST~EAIELAr~Ae~aGADAVmViPPyY~kps~S~eeLv~YFraIAeAtdLPI 576 (786)
++||+.++. ...+++|+.++..+++|||++.+-.+ + .+++ ++|+++.++|+
T Consensus 126 i~ViaRtd~~pq~~~~~gg~~~~~~~~~~~~~ai~Ra~ay~~AGAd~i~~e~~-----~--~e~~----~~i~~~~~~P~ 194 (240)
T cd06556 126 VPVIAHTGLTPQSVNTSGGDEGQYRGDEAGEQLIADALAYAPAGADLIVMECV-----P--VELA----KQITEALAIPL 194 (240)
T ss_pred CeEEEEeCCchhhhhccCCceeeccCHHHHHHHHHHHHHHHHcCCCEEEEcCC-----C--HHHH----HHHHHhCCCCE
Confidence 789988887 34779999999999999999998643 2 3333 45666788998
Q ss_pred EEEeCCC-CcCCccCHHHHHHH
Q psy11975 577 IIYNNTF-VTNIDISVDTLVKL 597 (786)
Q Consensus 577 iLYNiP~-~TGv~LSpelL~rL 597 (786)
+..=.|. ..|.-|....+.-+
T Consensus 195 ~~~gag~~~dgq~lv~~d~lg~ 216 (240)
T cd06556 195 AGIGAGSGTDGQFLVLADAFGI 216 (240)
T ss_pred EEEecCcCCCceEEeHHhhhcc
Confidence 8754443 23444544444433
No 104
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=84.83 E-value=27 Score=39.25 Aligned_cols=140 Identities=10% Similarity=0.040 Sum_probs=91.6
Q ss_pred CCeEEE-eCCCCCHHHHHHHHHHHHHc-CCCEE--EEcC-CCCCCCCCCHHHHHHHHHHHHhcCCCCEEEEeCCCCcCCc
Q psy11975 514 QADLLK-PQKHTTTRATIDLTQKAAKA-GANAA--LILC-PYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNID 588 (786)
Q Consensus 514 RVPVIa-GVGa~ST~EAIELAr~Ae~a-GADAV--mViP-PyY~kps~S~eeLv~YFraIAeAtdLPIiLYNiP~~TGv~ 588 (786)
++.++. -.|+.+.+||+..|+.|.++ |-+.| =|++ +.|..|. ..+.++-.+.+.+ =++-++.|=.+.
T Consensus 136 ~~~~lpNTag~~ta~eAv~~a~lare~~~~~~iKlEvi~e~~~llpd--~~~~v~aa~~L~~-~Gf~v~~yc~~d----- 207 (326)
T PRK11840 136 KYTYLPNTAGCYTAEEAVRTLRLAREAGGWDLVKLEVLGDAKTLYPD--MVETLKATEILVK-EGFQVMVYCSDD----- 207 (326)
T ss_pred CCEECccCCCCCCHHHHHHHHHHHHHhcCCCeEEEEEcCCCCCcccC--HHHHHHHHHHHHH-CCCEEEEEeCCC-----
Confidence 445555 55678899999999999998 44544 2444 4444454 8888888887764 267777776553
Q ss_pred cCHHHHHHHHhC--------CCEEEEEeC--CHHHHHHHHhhcCCCCEEEEeCCc----chhhhhhccCCcccccccccc
Q psy11975 589 ISVDTLVKLAHH--------ENIRGVKDT--DNIKLANMANQTKDLNFSVFAGSA----GYLLSGLLVGCAGGINALSAV 654 (786)
Q Consensus 589 LSpelL~rLAei--------PNVVGIKDS--Dl~ri~~ll~~~~~~df~Vf~G~D----elLL~aL~~GAdG~Isg~aN~ 654 (786)
+.+.++|+++ +..+|---. |...++.+++. .++.|+.|.. .....++.+|++|+...++-.
T Consensus 208 --~~~a~~l~~~g~~avmPl~~pIGsg~gv~~p~~i~~~~e~---~~vpVivdAGIg~~sda~~AmelGadgVL~nSaIa 282 (326)
T PRK11840 208 --PIAAKRLEDAGAVAVMPLGAPIGSGLGIQNPYTIRLIVEG---ATVPVLVDAGVGTASDAAVAMELGCDGVLMNTAIA 282 (326)
T ss_pred --HHHHHHHHhcCCEEEeeccccccCCCCCCCHHHHHHHHHc---CCCcEEEeCCCCCHHHHHHHHHcCCCEEEEcceec
Confidence 6677777654 344442222 77888877762 4577777654 346778999999998888755
Q ss_pred ccHHHHHHHHHH
Q psy11975 655 LGGPICELYDLA 666 (786)
Q Consensus 655 ~Pel~vaL~eA~ 666 (786)
-.+--+.|-+|+
T Consensus 283 ~a~dPv~Ma~A~ 294 (326)
T PRK11840 283 EAKNPVLMARAM 294 (326)
T ss_pred cCCCHHHHHHHH
Confidence 333334444443
No 105
>TIGR03332 salvage_mtnW 2,3-diketo-5-methylthiopentyl-1-phosphate enolase. Members of this family are the methionine salvage pathway enzyme 2,3-diketo-5-methylthiopentyl-1-phosphate enolase, a homolog of RuBisCO. This protein family seems restricted to Bacillus subtilis and close relatives, where two separate proteins carry the enolase and phosphatase activities that in other species occur in a single protein, MtnC (TIGR01691).
Probab=84.71 E-value=13 Score=42.86 Aligned_cols=94 Identities=17% Similarity=0.155 Sum_probs=57.2
Q ss_pred cCCCCeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHh--cCCCCEEEEeCCCCcC--
Q psy11975 511 REWQADLLKPQKHTTTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVAD--NSPIPVIIYNNTFVTN-- 586 (786)
Q Consensus 511 vaGRVPVIaGVGa~ST~EAIELAr~Ae~aGADAVmViPPyY~kps~S~eeLv~YFraIAe--AtdLPIiLYNiP~~TG-- 586 (786)
++.+.-..+++++ .+.+.++.++.|+++|+.++|+-+-.+- +.-++.+++ ..++||.. | |...|
T Consensus 204 TG~~~~y~~NiT~-~~~em~~ra~~a~~~G~~~~mv~~~~~G---------~~~~~~l~~~~~~~lpiha-H-ra~~ga~ 271 (407)
T TIGR03332 204 TGHKTLYAVNLTG-RTFDLKDKAKRAAELGADVLLFNVFAYG---------LDVLQSLAEDDEIPVPIMA-H-PAVSGAY 271 (407)
T ss_pred HCCcceEeecCCC-CHHHHHHHHHHHHHhCCCEEEEeccccC---------hHHHHHHHhcCCCCcEEEE-e-cCccccc
Confidence 4445555669987 5678999999999999999999864432 222555655 34677733 3 22333
Q ss_pred -----CccCH----HHHHHHH--h---CCCEEEEEeC-CHHHHHHH
Q psy11975 587 -----IDISV----DTLVKLA--H---HENIRGVKDT-DNIKLANM 617 (786)
Q Consensus 587 -----v~LSp----elL~rLA--e---iPNVVGIKDS-Dl~ri~~l 617 (786)
..++. ..|.||+ + +|++ +=|.. +.+.+.++
T Consensus 272 ~r~~~~Gis~~~~l~kl~RLaGaD~~~~~~~-~Gk~~~~~~~~~~~ 316 (407)
T TIGR03332 272 TSSPFYGFSHSLLLGKLLRYAGADFSLFPSP-YGSVALEREDALAI 316 (407)
T ss_pred ccCCCCcccHHHHHHHHHHhcCcCccccCCc-ccCCCCCHHHHHHH
Confidence 23553 3445555 2 4777 44666 54444433
No 106
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=84.71 E-value=21 Score=39.52 Aligned_cols=147 Identities=10% Similarity=0.071 Sum_probs=88.4
Q ss_pred CCeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEcC--CC--CCCCC------CCHHHHHHHHHHHHhcC--CCCEEEEeC
Q psy11975 514 QADLLKPQKHTTTRATIDLTQKAAKAGANAALILC--PY--YFQKK------MTEDLIYEHFISVADNS--PIPVIIYNN 581 (786)
Q Consensus 514 RVPVIaGVGa~ST~EAIELAr~Ae~aGADAVmViP--Py--Y~kps------~S~eeLv~YFraIAeAt--dLPIiLYNi 581 (786)
..|+++++.+.+.++.++.|+.+++.|+|+|=+-. |. ..+.+ -+.+-+.+.+++|-+++ ++||.+=--
T Consensus 62 e~p~~vQl~g~~p~~~~~aA~~~~~~g~d~IdiN~GCP~~~v~~~g~Gs~Ll~~~~~~~eiv~avr~~~~~~~pVsvKiR 141 (312)
T PRK10550 62 GTLVRIQLLGQYPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAKAMREAVPAHLPVTVKVR 141 (312)
T ss_pred CCcEEEEeccCCHHHHHHHHHHHHHcCCCEEEEeCCCCchHHhcCCCchHhhcCHHHHHHHHHHHHHhcCCCcceEEEEE
Confidence 46999999999999999999999999999987643 32 11111 14777888899998888 489988754
Q ss_pred CCCcCCccCHHHHHHHHh--------CCCEEEEEeC----CHHHHHHHHhhcCCCCEE-EEeCCcc---hhhhhh-ccCC
Q psy11975 582 TFVTNIDISVDTLVKLAH--------HENIRGVKDT----DNIKLANMANQTKDLNFS-VFAGSAG---YLLSGL-LVGC 644 (786)
Q Consensus 582 P~~TGv~LSpelL~rLAe--------iPNVVGIKDS----Dl~ri~~ll~~~~~~df~-Vf~G~De---lLL~aL-~~GA 644 (786)
++....+...+....|.+ +++...=.++ |++.+.++.+. . ++. +.+|.=. .+...+ ..|+
T Consensus 142 ~g~~~~~~~~~~a~~l~~~Gvd~i~Vh~Rt~~~~y~g~~~~~~~i~~ik~~-~--~iPVi~nGdI~t~~da~~~l~~~g~ 218 (312)
T PRK10550 142 LGWDSGERKFEIADAVQQAGATELVVHGRTKEDGYRAEHINWQAIGEIRQR-L--TIPVIANGEIWDWQSAQQCMAITGC 218 (312)
T ss_pred CCCCCchHHHHHHHHHHhcCCCEEEECCCCCccCCCCCcccHHHHHHHHhh-c--CCcEEEeCCcCCHHHHHHHHhccCC
Confidence 432211111222233322 1221111111 45566666552 2 344 3444311 233444 3789
Q ss_pred cccccccccc-ccHHHHHHH
Q psy11975 645 AGGINALSAV-LGGPICELY 663 (786)
Q Consensus 645 dG~Isg~aN~-~Pel~vaL~ 663 (786)
||++-|-+.+ -|.++.++-
T Consensus 219 DgVmiGRg~l~nP~lf~~~~ 238 (312)
T PRK10550 219 DAVMIGRGALNIPNLSRVVK 238 (312)
T ss_pred CEEEEcHHhHhCcHHHHHhh
Confidence 9999887765 577777653
No 107
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=84.38 E-value=11 Score=42.73 Aligned_cols=91 Identities=10% Similarity=0.094 Sum_probs=58.8
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEEEcCCCCC-----CCCC--CHHHHHHHHHHHHhcCCCCEEEEeCCCCcCCccCHHHHH
Q psy11975 523 HTTTRATIDLTQKAAKAGANAALILCPYYF-----QKKM--TEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLV 595 (786)
Q Consensus 523 a~ST~EAIELAr~Ae~aGADAVmViPPyY~-----kps~--S~eeLv~YFraIAeAtdLPIiLYNiP~~TGv~LSpelL~ 595 (786)
+.+.+|++++++..+++|+|.+-+....|. .+.. .......+-+.|.+++++||+. +|.--+++...
T Consensus 248 g~~~e~~~~~~~~l~~~gvD~l~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~pvi~------~G~i~~~~~~~ 321 (382)
T cd02931 248 GRDLEEGLKAAKILEEAGYDALDVDAGSYDAWYWNHPPMYQKKGMYLPYCKALKEVVDVPVIM------AGRMEDPELAS 321 (382)
T ss_pred CCCHHHHHHHHHHHHHhCCCEEEeCCCCCcccccccCCccCCcchhHHHHHHHHHHCCCCEEE------eCCCCCHHHHH
Confidence 568899999999999999999988753321 1110 0112234556777778899885 34445788888
Q ss_pred HHHhCC--CEEEEEeC---CHHHHHHHHh
Q psy11975 596 KLAHHE--NIRGVKDT---DNIKLANMAN 619 (786)
Q Consensus 596 rLAeiP--NVVGIKDS---Dl~ri~~ll~ 619 (786)
++.+.. .+|++=-. |.+-+.++.+
T Consensus 322 ~~l~~g~~D~V~~gR~~ladP~l~~k~~~ 350 (382)
T cd02931 322 EAINEGIADMISLGRPLLADPDVVNKIRR 350 (382)
T ss_pred HHHHcCCCCeeeechHhHhCccHHHHHHc
Confidence 877533 44554333 6666666654
No 108
>cd03465 URO-D_like The URO-D _like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases. Uroporphyrinogen decarboxylase (URO-D) decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, an important branching point of the tetrapyrrole biosynthetic pathway. The methyltransferases represented here are important for ability of methanogenic organisms to use other compounds than carbon dioxide for reduction to methane.
Probab=84.05 E-value=28 Score=37.69 Aligned_cols=100 Identities=18% Similarity=0.093 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHH----HHHHHHHHHhcC---CCCEEEEeCCCCcCCccCHHHHHHHH
Q psy11975 526 TRATIDLTQKAAKAGANAALILCPYYFQKKMTEDL----IYEHFISVADNS---PIPVIIYNNTFVTNIDISVDTLVKLA 598 (786)
Q Consensus 526 T~EAIELAr~Ae~aGADAVmViPPyY~kps~S~ee----Lv~YFraIAeAt---dLPIiLYNiP~~TGv~LSpelL~rLA 598 (786)
++..+++++...++|+|++.+.-|.-...-++++. +..|+++|.+++ +.+++++.+- .+. ..+..|+
T Consensus 167 ~~~~~~~~~~~~~~G~d~i~i~d~~~~~~~isp~~f~e~~~p~~k~i~~~i~~~g~~~~lH~cG-~~~-----~~~~~l~ 240 (330)
T cd03465 167 TEFIIRYADALIEAGADGIYISDPWASSSILSPEDFKEFSLPYLKKVFDAIKALGGPVIHHNCG-DTA-----PILELMA 240 (330)
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCCccccCCCCHHHHHHHhhHHHHHHHHHHHHcCCceEEEECC-Cch-----hHHHHHH
Confidence 56778888888899999999998865433123543 456667777766 5788888873 222 5566666
Q ss_pred hCC-CEEEEEeC-CHHHHHHHHhhcCCCCEEEEeCCcch
Q psy11975 599 HHE-NIRGVKDT-DNIKLANMANQTKDLNFSVFAGSAGY 635 (786)
Q Consensus 599 eiP-NVVGIKDS-Dl~ri~~ll~~~~~~df~Vf~G~Del 635 (786)
+.+ .++.+-.. |+....+. .+++..++.|.|..
T Consensus 241 ~~~~d~~~~d~~~dl~~~~~~----~g~~~~i~G~id~~ 275 (330)
T cd03465 241 DLGADVFSIDVTVDLAEAKKK----VGDKACLMGNLDPI 275 (330)
T ss_pred HhCCCeEeecccCCHHHHHHH----hCCceEEEeCcChH
Confidence 653 66666555 77765544 34566777776654
No 109
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=84.04 E-value=9.7 Score=42.10 Aligned_cols=85 Identities=7% Similarity=-0.003 Sum_probs=55.7
Q ss_pred ccCCCCeEEEeC-------CCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCC--------C-CHH-HHHHHHHHHHhcC
Q psy11975 510 EREWQADLLKPQ-------KHTTTRATIDLTQKAAKAGANAALILCPYYFQKK--------M-TED-LIYEHFISVADNS 572 (786)
Q Consensus 510 evaGRVPVIaGV-------Ga~ST~EAIELAr~Ae~aGADAVmViPPyY~kps--------~-S~e-eLv~YFraIAeAt 572 (786)
+++.+++|.+=+ ++.+.+|++++++..+++|+|.+-|..-.|..+. . ..+ -..++.+.|.+++
T Consensus 212 avG~d~~v~vris~~~~~~~g~~~eea~~ia~~Le~~Gvd~iev~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~v 291 (338)
T cd04733 212 AVGPGFPVGIKLNSADFQRGGFTEEDALEVVEALEEAGVDLVELSGGTYESPAMAGAKKESTIAREAYFLEFAEKIRKVT 291 (338)
T ss_pred HcCCCCeEEEEEcHHHcCCCCCCHHHHHHHHHHHHHcCCCEEEecCCCCCCccccccccCCccccchhhHHHHHHHHHHc
Confidence 344567777644 3568999999999999999999987543221111 0 011 1246667788888
Q ss_pred CCCEEEEeCCCCcCCccCHHHHHHHHhC
Q psy11975 573 PIPVIIYNNTFVTNIDISVDTLVKLAHH 600 (786)
Q Consensus 573 dLPIiLYNiP~~TGv~LSpelL~rLAei 600 (786)
++||++= |.--+++...++.+.
T Consensus 292 ~iPVi~~------G~i~t~~~a~~~l~~ 313 (338)
T cd04733 292 KTPLMVT------GGFRTRAAMEQALAS 313 (338)
T ss_pred CCCEEEe------CCCCCHHHHHHHHHc
Confidence 8998762 333478888777753
No 110
>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4.1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....
Probab=83.91 E-value=3.3 Score=44.63 Aligned_cols=61 Identities=21% Similarity=0.348 Sum_probs=42.6
Q ss_pred CCCCeEEEeCCCCC--------HHHHHHHHHHHHHcCCCEEEEcC-CCCCCCCCCHHHHHHHHHHHHhcCCCCEEE
Q psy11975 512 EWQADLLKPQKHTT--------TRATIDLTQKAAKAGANAALILC-PYYFQKKMTEDLIYEHFISVADNSPIPVII 578 (786)
Q Consensus 512 aGRVPVIaGVGa~S--------T~EAIELAr~Ae~aGADAVmViP-PyY~kps~S~eeLv~YFraIAeAtdLPIiL 578 (786)
.+++.||+-+--.| ..+..++|+..++.||+|+.|+. |.||.-+ .+++++|.+++++|++-
T Consensus 45 ~~~~~vIAEiKraSPs~G~i~~~~d~~~~a~~y~~~GA~aiSVlTe~~~F~Gs------~~dL~~v~~~~~~PvL~ 114 (254)
T PF00218_consen 45 EGRISVIAEIKRASPSKGDIREDFDPAEIAKAYEEAGAAAISVLTEPKFFGGS------LEDLRAVRKAVDLPVLR 114 (254)
T ss_dssp TSS-EEEEEE-SEETTTEESBSS-SHHHHHHHHHHTT-SEEEEE--SCCCHHH------HHHHHHHHHHSSS-EEE
T ss_pred CCCCeEEEEeecCCCCCCccCccCCHHHHHHHHHhcCCCEEEEECCCCCCCCC------HHHHHHHHHHhCCCccc
Confidence 35667777543322 25889999999999999998887 5666543 78889999999999987
No 111
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=83.55 E-value=23 Score=38.13 Aligned_cols=128 Identities=16% Similarity=0.109 Sum_probs=77.2
Q ss_pred CCeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHhcCCCCEEEEeCCCCcCCccCHHH
Q psy11975 514 QADLLKPQKHTTTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDT 593 (786)
Q Consensus 514 RVPVIaGVGa~ST~EAIELAr~Ae~aGADAVmViPPyY~kps~S~eeLv~YFraIAeAtdLPIiLYNiP~~TGv~LSpel 593 (786)
++||+. -..-+..- .+..|.++|||+|+++.-.. + ++.+.+.++.. ...++-+++-= -+.+.
T Consensus 111 ~iPvl~--kdfi~~~~--qi~~a~~~GAD~VlLi~~~l---~--~~~l~~li~~a-~~lGl~~lvev--------h~~~E 172 (260)
T PRK00278 111 SLPVLR--KDFIIDPY--QIYEARAAGADAILLIVAAL---D--DEQLKELLDYA-HSLGLDVLVEV--------HDEEE 172 (260)
T ss_pred CCCEEe--eeecCCHH--HHHHHHHcCCCEEEEEeccC---C--HHHHHHHHHHH-HHcCCeEEEEe--------CCHHH
Confidence 579986 22222222 58889999999999997552 2 45666666654 34576666432 12445
Q ss_pred HHHHHh-CCCEEEEEe----C---CHHHHHHHHhhcCCCC-EEEE-eCCc--chhhhhhccCCccccccccccccHHHH
Q psy11975 594 LVKLAH-HENIRGVKD----T---DNIKLANMANQTKDLN-FSVF-AGSA--GYLLSGLLVGCAGGINALSAVLGGPIC 660 (786)
Q Consensus 594 L~rLAe-iPNVVGIKD----S---Dl~ri~~ll~~~~~~d-f~Vf-~G~D--elLL~aL~~GAdG~Isg~aN~~Pel~v 660 (786)
+.+..+ -+.++|+-. + |+....+++.. ...+ +.|- .|-. +.+...+.+|++|++-|.+-.-++-..
T Consensus 173 ~~~A~~~gadiIgin~rdl~~~~~d~~~~~~l~~~-~p~~~~vIaegGI~t~ed~~~~~~~Gad~vlVGsaI~~~~dp~ 250 (260)
T PRK00278 173 LERALKLGAPLIGINNRNLKTFEVDLETTERLAPL-IPSDRLVVSESGIFTPEDLKRLAKAGADAVLVGESLMRADDPG 250 (260)
T ss_pred HHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHh-CCCCCEEEEEeCCCCHHHHHHHHHcCCCEEEECHHHcCCCCHH
Confidence 555554 367888764 2 67777777663 2333 3333 3332 245567789999999887755443333
No 112
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=83.26 E-value=9 Score=39.36 Aligned_cols=117 Identities=14% Similarity=0.187 Sum_probs=72.7
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEEEcCCCC-CCCCCCHHHHHHHHHHHHhcC-CCCEEE-EeCCCCcCCccCHHHHHHHHh
Q psy11975 523 HTTTRATIDLTQKAAKAGANAALILCPYY-FQKKMTEDLIYEHFISVADNS-PIPVII-YNNTFVTNIDISVDTLVKLAH 599 (786)
Q Consensus 523 a~ST~EAIELAr~Ae~aGADAVmViPPyY-~kps~S~eeLv~YFraIAeAt-dLPIiL-YNiP~~TGv~LSpelL~rLAe 599 (786)
...++.-+..++.|.+.|||+|-+..++- ++.+ ..+.+.+...+|.+++ ++|+.+ +..+ .++.+.+.+.++
T Consensus 65 ~~~~~~k~~eve~A~~~GAdevdvv~~~g~~~~~-~~~~~~~ei~~v~~~~~g~~lkvI~e~~-----~l~~~~i~~a~r 138 (203)
T cd00959 65 ATTTEVKVAEAREAIADGADEIDMVINIGALKSG-DYEAVYEEIAAVVEACGGAPLKVILETG-----LLTDEEIIKACE 138 (203)
T ss_pred CCcHHHHHHHHHHHHHcCCCEEEEeecHHHHhCC-CHHHHHHHHHHHHHhcCCCeEEEEEecC-----CCCHHHHHHHHH
Confidence 35577778889999999999999998863 2232 4677899999999988 577754 4433 235666665553
Q ss_pred ---CCCEEEEEeC--------CHHHHHHHHhhc-CCCCEEEEeCCc--chhhhhhccCCc
Q psy11975 600 ---HENIRGVKDT--------DNIKLANMANQT-KDLNFSVFAGSA--GYLLSGLLVGCA 645 (786)
Q Consensus 600 ---iPNVVGIKDS--------Dl~ri~~ll~~~-~~~df~Vf~G~D--elLL~aL~~GAd 645 (786)
.-..-.||-+ ++..+..+.+.. .+-.+.+-.|-- +.++..+.+|++
T Consensus 139 ia~e~GaD~IKTsTG~~~~~at~~~v~~~~~~~~~~v~ik~aGGikt~~~~l~~~~~g~~ 198 (203)
T cd00959 139 IAIEAGADFIKTSTGFGPGGATVEDVKLMKEAVGGRVGVKAAGGIRTLEDALAMIEAGAT 198 (203)
T ss_pred HHHHhCCCEEEcCCCCCCCCCCHHHHHHHHHHhCCCceEEEeCCCCCHHHHHHHHHhChh
Confidence 2355667765 234433333311 123455555543 235666667664
No 113
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=83.25 E-value=8.1 Score=45.37 Aligned_cols=118 Identities=13% Similarity=0.114 Sum_probs=75.3
Q ss_pred HHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHhcC-CCCEEEEeCCCCcCCccCHHHHHHHHhCCCEEE
Q psy11975 527 RATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNS-PIPVIIYNNTFVTNIDISVDTLVKLAHHENIRG 605 (786)
Q Consensus 527 ~EAIELAr~Ae~aGADAVmViPPyY~kps~S~eeLv~YFraIAeAt-dLPIiLYNiP~~TGv~LSpelL~rLAeiPNVVG 605 (786)
.+.++.++...++|+|.|.+-...-. .....+..+.|.+.. +++|+. |.-.+++....+.+. .+-+
T Consensus 240 ~~~~~~~~~l~~ag~d~i~id~a~G~-----s~~~~~~i~~ik~~~~~~~v~a-------G~V~t~~~a~~~~~a-Gad~ 306 (495)
T PTZ00314 240 PEDIERAAALIEAGVDVLVVDSSQGN-----SIYQIDMIKKLKSNYPHVDIIA-------GNVVTADQAKNLIDA-GADG 306 (495)
T ss_pred HHHHHHHHHHHHCCCCEEEEecCCCC-----chHHHHHHHHHHhhCCCceEEE-------CCcCCHHHHHHHHHc-CCCE
Confidence 45699999999999999988765321 233466777777765 577777 667888988888753 1123
Q ss_pred EEe---------C---------CHHHHHHHHhhcCCCCEEEEe--CCc--chhhhhhccCCccccccccccccH
Q psy11975 606 VKD---------T---------DNIKLANMANQTKDLNFSVFA--GSA--GYLLSGLLVGCAGGINALSAVLGG 657 (786)
Q Consensus 606 IKD---------S---------Dl~ri~~ll~~~~~~df~Vf~--G~D--elLL~aL~~GAdG~Isg~aN~~Pe 657 (786)
||- + .+..+.++.+.....++.++. |-- ..+..++++||+++|.|..-.-++
T Consensus 307 I~vg~g~Gs~~~t~~~~~~g~p~~~ai~~~~~~~~~~~v~vIadGGi~~~~di~kAla~GA~~Vm~G~~~a~~~ 380 (495)
T PTZ00314 307 LRIGMGSGSICITQEVCAVGRPQASAVYHVARYARERGVPCIADGGIKNSGDICKALALGADCVMLGSLLAGTE 380 (495)
T ss_pred EEECCcCCcccccchhccCCCChHHHHHHHHHHHhhcCCeEEecCCCCCHHHHHHHHHcCCCEEEECchhcccc
Confidence 321 1 122333333322223567777 432 347789999999999998644443
No 114
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase. A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.
Probab=83.02 E-value=21 Score=39.21 Aligned_cols=140 Identities=12% Similarity=0.013 Sum_probs=83.5
Q ss_pred EEEeCCCCCHHHHHHHHHHHHHc---------CCCEEEEcCCC----CCCCC---CCHHHHHHHHHHHHhcCCCCEEEEe
Q psy11975 517 LLKPQKHTTTRATIDLTQKAAKA---------GANAALILCPY----YFQKK---MTEDLIYEHFISVADNSPIPVIIYN 580 (786)
Q Consensus 517 VIaGVGa~ST~EAIELAr~Ae~a---------GADAVmViPPy----Y~kps---~S~eeLv~YFraIAeAtdLPIiLYN 580 (786)
++.|+-.. --|+.++++ |++++.+..=- .-.|+ ++.+++.+..+.|+.++++|| +.|
T Consensus 12 ~~p~~~D~------~SA~~~e~~~~~~~~~~~Gf~ai~~ss~~~a~s~G~pD~~~~~~~e~~~~~~~I~~a~~~Pv-~~D 84 (285)
T TIGR02320 12 RLMEAHNG------LSALIAEEARVEVGGESLGFDGIWSSSLTDSTSRGVPDIEEASWTQRLDVVEFMFDVTTKPI-ILD 84 (285)
T ss_pred EEecCcCH------HHHHHHHHhhhcccCcCCCcCEEEechHHHHHHCCCCCcCcCCHHHHHHHHHHHHhhcCCCE-EEe
Confidence 45566663 235566667 99999876511 12232 468999999999999999997 556
Q ss_pred CCCCcCCccCHHHHHHHHh---CCCEEEEEeC--------------------CH----HHHHHHHhhcCCCCEEEEeCCc
Q psy11975 581 NTFVTNIDISVDTLVKLAH---HENIRGVKDT--------------------DN----IKLANMANQTKDLNFSVFAGSA 633 (786)
Q Consensus 581 iP~~TGv~LSpelL~rLAe---iPNVVGIKDS--------------------Dl----~ri~~ll~~~~~~df~Vf~G~D 633 (786)
.- +| .++..+.+.++ --.+.||=.+ +. .+++..++...+++|.|....|
T Consensus 85 ~d--~G--g~~~~v~r~V~~l~~aGvaGi~iEDq~~pk~cg~~~~~~~~~l~s~ee~~~kI~Aa~~a~~~~~~~IiARTD 160 (285)
T TIGR02320 85 GD--TG--GNFEHFRRLVRKLERRGVSAVCIEDKLGLKKNSLFGNDVAQPQASVEEFCGKIRAGKDAQTTEDFMIIARVE 160 (285)
T ss_pred cC--CC--CCHHHHHHHHHHHHHcCCeEEEEeccCCCccccccCCCCcccccCHHHHHHHHHHHHHhccCCCeEEEEecc
Confidence 53 55 36666555441 2455555441 33 3333333322467788888866
Q ss_pred chh------------hhhhccCCccccccccccccHHHHHHHHHHH
Q psy11975 634 GYL------------LSGLLVGCAGGINALSAVLGGPICELYDLAK 667 (786)
Q Consensus 634 elL------------L~aL~~GAdG~Isg~aN~~Pel~vaL~eA~~ 667 (786)
.++ -....+|+|+++.-....-++.+.++++.+.
T Consensus 161 a~~~~~~~~eAi~Ra~ay~eAGAD~ifv~~~~~~~~ei~~~~~~~~ 206 (285)
T TIGR02320 161 SLILGKGMEDALKRAEAYAEAGADGIMIHSRKKDPDEILEFARRFR 206 (285)
T ss_pred cccccCCHHHHHHHHHHHHHcCCCEEEecCCCCCHHHHHHHHHHhh
Confidence 543 1234589998876532334566666666653
No 115
>PF01180 DHO_dh: Dihydroorotate dehydrogenase; InterPro: IPR012135 Dihydroorotate dehydrogenase (DHOD), also known as dihydroorotate oxidase, catalyses the fourth step in de novo pyrimidine biosynthesis, the stereospecific oxidation of (S)-dihydroorotate to orotate, which is the only redox reaction in this pathway. DHODs can be divided into two mains classes: class 1 cytosolic enzymes found primarily in Gram-positive bacteria, and class 2 membrane-associated enzymes found primarily in eukaryotic mitochondria and Gram-negative bacteria []. The class 1 DHODs can be further divided into subclasses 1A and 1B, which differ in their structural organisation and use of electron acceptors. The 1A enzyme is a homodimer of two PyrD subunits where each subunit forms a TIM barrel fold with a bound FMN cofactor located near the top of the barrel []. Fumarate is the natural electron acceptor for this enzyme. The 1B enzyme, in contrast is a heterotetramer composed of a central, FMN-containing, PyrD homodimer resembling the 1A homodimer, and two additional PyrK subunits which contain FAD and a 2Fe-2S cluster []. These additional groups allow the enzyme to use NAD(+) as its natural electron acceptor. The class 2 membrane-associated enzymes are monomers which have the FMN-containing TIM barrel domain found in the class 1 PyrD subunit, and an additional N-terminal alpha helical domain [, ]. These enzymes use respiratory quinones as the physiological electron acceptor. This entry represents the FMN-binding subunit common to all classes of dihydroorotate dehydrogenase.; GO: 0004152 dihydroorotate dehydrogenase activity, 0006222 UMP biosynthetic process, 0055114 oxidation-reduction process; PDB: 3GYE_A 3GZ3_A 3MHU_B 3MJY_A 3TQ0_A 2B4G_C 1EP3_A 1EP2_A 1EP1_A 3I6R_A ....
Probab=82.99 E-value=6.6 Score=42.41 Aligned_cols=151 Identities=15% Similarity=0.150 Sum_probs=87.1
Q ss_pred CCeEEEeCCCCC---HHHHHHHHHHHHHcCCCEEEE--cCCCCCC--CCCCHHHHHH-HHHHHHhcCCCCEEEEeCCCCc
Q psy11975 514 QADLLKPQKHTT---TRATIDLTQKAAKAGANAALI--LCPYYFQ--KKMTEDLIYE-HFISVADNSPIPVIIYNNTFVT 585 (786)
Q Consensus 514 RVPVIaGVGa~S---T~EAIELAr~Ae~aGADAVmV--iPPyY~k--ps~S~eeLv~-YFraIAeAtdLPIiLYNiP~~T 585 (786)
.+|||+++.+.+ .+|-+++++.++ .|||++=+ ..|..-. .....+++.. ..+.+.+.+++||++-=-|..+
T Consensus 96 ~~pvi~Si~~~~~~~~~d~~~~a~~~~-~~ad~lElN~ScPn~~~~~~~~~~~~~~~~i~~~v~~~~~~Pv~vKL~p~~~ 174 (295)
T PF01180_consen 96 DIPVIASINGDSEEEIEDWAELAKRLE-AGADALELNLSCPNVPGGRPFGQDPELVAEIVRAVREAVDIPVFVKLSPNFT 174 (295)
T ss_dssp CEEEEEEE-TSSSGHHHHHHHHHHHHH-HHCSEEEEESTSTTSTTSGGGGGHHHHHHHHHHHHHHHHSSEEEEEE-STSS
T ss_pred ceeEEEEeecCCchhHHHHHHHHHHhc-CcCCceEEEeeccCCCCccccccCHHHHHHHHHHHHhccCCCEEEEecCCCC
Confidence 579999999999 999999999888 89999866 3343311 0012344444 4445555568999998766433
Q ss_pred CCccCHHHHHHHH--hCCCEE-----EEEe------------------C-------CHHHHHHHHhhcCCCCEEEEeCCc
Q psy11975 586 NIDISVDTLVKLA--HHENIR-----GVKD------------------T-------DNIKLANMANQTKDLNFSVFAGSA 633 (786)
Q Consensus 586 Gv~LSpelL~rLA--eiPNVV-----GIKD------------------S-------Dl~ri~~ll~~~~~~df~Vf~G~D 633 (786)
.... .+.+.+++ .+..|+ +-.+ + .+..+.++.+ ..++++.|+....
T Consensus 175 ~~~~-~~~~~~~~~~g~~gi~~~Nt~~~~~~id~~~~~~~~~~~~gGlSG~~i~p~aL~~V~~~~~-~~~~~i~Iig~GG 252 (295)
T PF01180_consen 175 DIEP-FAIAAELAADGADGIVAINTFGQGDAIDLETRRPVLGNGFGGLSGPAIRPIALRWVRELRK-ALGQDIPIIGVGG 252 (295)
T ss_dssp CHHH-HHHHHHHHTHTECEEEE---EEEEE-EETTTTEESSSGGEEEEEEGGGHHHHHHHHHHHHH-HTTTSSEEEEESS
T ss_pred chHH-HHHHHHhhccceeEEEEecCccCcccccchhcceeeccccCCcCchhhhhHHHHHHHHHHh-ccccceEEEEeCC
Confidence 2111 23344443 233333 1111 1 0122233333 3455677654433
Q ss_pred ----chhhhhhccCCcccccccccc--ccHHHHHHHHHHH
Q psy11975 634 ----GYLLSGLLVGCAGGINALSAV--LGGPICELYDLAK 667 (786)
Q Consensus 634 ----elLL~aL~~GAdG~Isg~aN~--~Pel~vaL~eA~~ 667 (786)
+..++.+.+||+.+..+++.+ -|..+.+|.+.++
T Consensus 253 I~s~~da~e~l~aGA~~Vqv~Sal~~~Gp~~~~~i~~~L~ 292 (295)
T PF01180_consen 253 IHSGEDAIEFLMAGASAVQVCSALIYRGPGVIRRINRELE 292 (295)
T ss_dssp --SHHHHHHHHHHTESEEEESHHHHHHGTTHHHHHHHHHH
T ss_pred cCCHHHHHHHHHhCCCHheechhhhhcCcHHHHHHHHHHH
Confidence 246788899999887777653 3677777766543
No 116
>TIGR02321 Pphn_pyruv_hyd phosphonopyruvate hydrolase. This family consists of phosphonopyruvate hydrolase, an enzyme closely related to phosphoenolpyruvate phosphomutase. It cleaves the direct C-P bond of phosphonopyruvate. The characterized example is from Variovorax sp. Pal2.
Probab=82.87 E-value=12 Score=41.12 Aligned_cols=64 Identities=22% Similarity=0.271 Sum_probs=44.9
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHhcCCCCEEEEeCCCCcCCccCHHHHHHHH
Q psy11975 525 TTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLA 598 (786)
Q Consensus 525 ST~EAIELAr~Ae~aGADAVmViPPyY~kps~S~eeLv~YFraIAeAtdLPIiLYNiP~~TGv~LSpelL~rLA 598 (786)
..+|+|+.++.++++|||+|.+-.+. . +.+++.+..+.+. .++|+++- |+ .+..++.+.+.+|.
T Consensus 164 g~deAI~Ra~aY~eAGAD~ifv~~~~---~--~~~ei~~~~~~~~--~p~pv~~~--~~-~~p~~~~~~l~~lg 227 (290)
T TIGR02321 164 GQQEAVRRGQAYEEAGADAILIHSRQ---K--TPDEILAFVKSWP--GKVPLVLV--PT-AYPQLTEADIAALS 227 (290)
T ss_pred CHHHHHHHHHHHHHcCCCEEEecCCC---C--CHHHHHHHHHhcC--CCCCeEEe--cC-CCCCCCHHHHHHhc
Confidence 56999999999999999999985432 1 4777777666552 24788743 32 23456777777774
No 117
>CHL00040 rbcL ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit
Probab=82.77 E-value=10 Score=44.44 Aligned_cols=81 Identities=9% Similarity=-0.078 Sum_probs=52.7
Q ss_pred cCCCCeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHhcCCCCEEEEeCCCCcC----
Q psy11975 511 REWQADLLKPQKHTTTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTN---- 586 (786)
Q Consensus 511 vaGRVPVIaGVGa~ST~EAIELAr~Ae~aGADAVmViPPyY~kps~S~eeLv~YFraIAeAtdLPIiLYNiP~~TG---- 586 (786)
++.+.-..++|++.++++.++.++.|+++|+.++|+-+-.+ ..+ .+...++-|+..++||..+-. ..|
T Consensus 232 TG~~~~y~~NiTa~~~~em~~ra~~a~e~G~~~~mv~~~~~-G~~-----al~~l~~~~~~~~l~IhaHrA--~~ga~~r 303 (475)
T CHL00040 232 TGEIKGHYLNATAGTCEEMYKRAVFARELGVPIVMHDYLTG-GFT-----ANTSLAHYCRDNGLLLHIHRA--MHAVIDR 303 (475)
T ss_pred hCCcceeeeccCCCCHHHHHHHHHHHHHcCCceEEEecccc-ccc-----hHHHHHHHhhhcCceEEeccc--ccccccc
Confidence 33333347799988999999999999999999998876443 222 244444444456788765533 222
Q ss_pred ---CccCHHHHHHHHh
Q psy11975 587 ---IDISVDTLVKLAH 599 (786)
Q Consensus 587 ---v~LSpelL~rLAe 599 (786)
..++.-++.+|.+
T Consensus 304 ~~~~Gis~~vl~KL~R 319 (475)
T CHL00040 304 QKNHGIHFRVLAKALR 319 (475)
T ss_pred CccCCCcHHHHHHHHH
Confidence 2355666666653
No 118
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=82.76 E-value=33 Score=36.34 Aligned_cols=139 Identities=14% Similarity=0.071 Sum_probs=86.5
Q ss_pred CCeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEcC--CCC--CC--CC----CCHHHHHHHHHHHHhcCCCCEEEEeCCC
Q psy11975 514 QADLLKPQKHTTTRATIDLTQKAAKAGANAALILC--PYY--FQ--KK----MTEDLIYEHFISVADNSPIPVIIYNNTF 583 (786)
Q Consensus 514 RVPVIaGVGa~ST~EAIELAr~Ae~aGADAVmViP--PyY--~k--ps----~S~eeLv~YFraIAeAtdLPIiLYNiP~ 583 (786)
..|+++++.+.+.++.++.|+.+++. +|.+=+-. |.- .+ .+ .+.+.+.+..++|.+ +++||.+=--++
T Consensus 72 ~~p~~vqi~g~~~~~~~~aa~~~~~~-~~~ielN~gCP~~~v~~~g~G~~Ll~~p~~l~eiv~avr~-~~~pVsvKir~g 149 (233)
T cd02911 72 NVLVGVNVRSSSLEPLLNAAALVAKN-AAILEINAHCRQPEMVEAGAGEALLKDPERLSEFIKALKE-TGVPVSVKIRAG 149 (233)
T ss_pred CCeEEEEecCCCHHHHHHHHHHHhhc-CCEEEEECCCCcHHHhcCCcchHHcCCHHHHHHHHHHHHh-cCCCEEEEEcCC
Confidence 46999999999999999999999884 58776533 321 01 01 147888899999876 689988866443
Q ss_pred CcCCccCHHHHHHHH-h--CCCEEE--EEe--C-CHHHHHHHHhhcCCCCEEEE-eCCc---chhhhhhccCCccccccc
Q psy11975 584 VTNIDISVDTLVKLA-H--HENIRG--VKD--T-DNIKLANMANQTKDLNFSVF-AGSA---GYLLSGLLVGCAGGINAL 651 (786)
Q Consensus 584 ~TGv~LSpelL~rLA-e--iPNVVG--IKD--S-Dl~ri~~ll~~~~~~df~Vf-~G~D---elLL~aL~~GAdG~Isg~ 651 (786)
.+ .....+++.+ + ...|.+ .+. . |+..+.++. .++.|+ +|.= +.....+..|++|++.|-
T Consensus 150 ~~---~~~~~la~~l~~aG~d~ihv~~~~~g~~ad~~~I~~i~-----~~ipVIgnGgI~s~eda~~~l~~GaD~VmiGR 221 (233)
T cd02911 150 VD---VDDEELARLIEKAGADIIHVDAMDPGNHADLKKIRDIS-----TELFIIGNNSVTTIESAKEMFSYGADMVSVAR 221 (233)
T ss_pred cC---cCHHHHHHHHHHhCCCEEEECcCCCCCCCcHHHHHHhc-----CCCEEEEECCcCCHHHHHHHHHcCCCEEEEcC
Confidence 32 2233333333 2 232222 111 1 454444432 234433 3331 235667778999999999
Q ss_pred cccccHHHHHHH
Q psy11975 652 SAVLGGPICELY 663 (786)
Q Consensus 652 aN~~Pel~vaL~ 663 (786)
+ .-|+++.+|.
T Consensus 222 ~-~~p~~~~~~~ 232 (233)
T cd02911 222 A-SLPENIEWLV 232 (233)
T ss_pred C-CCchHHHHhh
Confidence 9 8898887764
No 119
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=82.64 E-value=27 Score=35.84 Aligned_cols=122 Identities=14% Similarity=0.115 Sum_probs=72.6
Q ss_pred CCeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHhcCCCCEEEEeCCCCcCCccCHHH
Q psy11975 514 QADLLKPQKHTTTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDT 593 (786)
Q Consensus 514 RVPVIaGVGa~ST~EAIELAr~Ae~aGADAVmViPPyY~kps~S~eeLv~YFraIAeAtdLPIiLYNiP~~TGv~LSpel 593 (786)
++||+++-+-.+. +.++.+.++|||+|.+..+.. ..+.+.++++... ..++.+++-- -+.+.
T Consensus 72 ~iPi~~~~~i~~~----~~v~~~~~~Gad~v~l~~~~~-----~~~~~~~~~~~~~-~~g~~~~v~v--------~~~~e 133 (217)
T cd00331 72 SLPVLRKDFIIDP----YQIYEARAAGADAVLLIVAAL-----DDEQLKELYELAR-ELGMEVLVEV--------HDEEE 133 (217)
T ss_pred CCCEEECCeecCH----HHHHHHHHcCCCEEEEeeccC-----CHHHHHHHHHHHH-HcCCeEEEEE--------CCHHH
Confidence 5799975333222 368889999999999987653 1455555555442 3455543222 14566
Q ss_pred HHHHHhC-CCEEEEEe------C-CHHHHHHHHhhcCCCCEEEE--eCCc--chhhhhhccCCcccccccccc
Q psy11975 594 LVKLAHH-ENIRGVKD------T-DNIKLANMANQTKDLNFSVF--AGSA--GYLLSGLLVGCAGGINALSAV 654 (786)
Q Consensus 594 L~rLAei-PNVVGIKD------S-Dl~ri~~ll~~~~~~df~Vf--~G~D--elLL~aL~~GAdG~Isg~aN~ 654 (786)
+.++.+. ..++|+=. . ++..+.++.+. ...+..++ .|-. +.+...+.+|++|++.|.+-+
T Consensus 134 ~~~~~~~g~~~i~~t~~~~~~~~~~~~~~~~l~~~-~~~~~pvia~gGI~s~edi~~~~~~Ga~gvivGsai~ 205 (217)
T cd00331 134 LERALALGAKIIGINNRDLKTFEVDLNTTERLAPL-IPKDVILVSESGISTPEDVKRLAEAGADAVLIGESLM 205 (217)
T ss_pred HHHHHHcCCCEEEEeCCCccccCcCHHHHHHHHHh-CCCCCEEEEEcCCCCHHHHHHHHHcCCCEEEECHHHc
Confidence 7666654 45555442 2 66666666552 22233444 3332 356677889999999998644
No 120
>cd08212 RuBisCO_large_I Ribulose bisphosphate carboxylase large chain, Form I. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV , which differ in their taxonomic distribution and subunit composition. Form I is the most abundant class, present in plants, algae, and bacteria, and forms large complexes composed of 8 large and 8 small subunits.
Probab=82.33 E-value=36 Score=39.84 Aligned_cols=89 Identities=8% Similarity=-0.067 Sum_probs=56.7
Q ss_pred cCCCCeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHhcCCCCEEEEeCCCCcC----
Q psy11975 511 REWQADLLKPQKHTTTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTN---- 586 (786)
Q Consensus 511 vaGRVPVIaGVGa~ST~EAIELAr~Ae~aGADAVmViPPyY~kps~S~eeLv~YFraIAeAtdLPIiLYNiP~~TG---- 586 (786)
++.+.-..+++++.++++.++.++.|+++|+.++|+- +....+ .+...++.|...++||..+-. ..|
T Consensus 210 TG~~~~y~~NiTa~~~~em~~ra~~a~~~G~~~~mv~--~~~G~~-----~l~~l~~~a~~~~l~IhaHrA--~~ga~~r 280 (450)
T cd08212 210 TGEVKGHYLNVTAGTMEEMYKRAEFAKELGSPIIMHD--LLTGFT-----AIQSLAKWCRDNGMLLHLHRA--GHATYDR 280 (450)
T ss_pred hCCcceeeccccCCCHHHHHHHHHHHHHhCCCeEeee--cccccc-----hHHHHHHHhhhcCceEEeccc--cceeccc
Confidence 3444445669998899999999999999999999998 222322 244444444456888776543 222
Q ss_pred ---CccCHHHHHHH---H--h---CCCEEEEEeC
Q psy11975 587 ---IDISVDTLVKL---A--H---HENIRGVKDT 609 (786)
Q Consensus 587 ---v~LSpelL~rL---A--e---iPNVVGIKDS 609 (786)
..++..++.+| + + +|++ +=|..
T Consensus 281 ~~~~Gis~~vl~kl~RLaGaD~ih~~t~-~Gk~~ 313 (450)
T cd08212 281 QKNHGIHFRVLAKWLRLSGVDHIHAGTV-VGKLE 313 (450)
T ss_pred CccCCcCHHHHHHHHHHcCCCccccCCC-cCCcC
Confidence 23555555555 4 2 3777 44666
No 121
>PRK04302 triosephosphate isomerase; Provisional
Probab=82.18 E-value=24 Score=36.80 Aligned_cols=122 Identities=14% Similarity=0.033 Sum_probs=70.1
Q ss_pred HHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHhcCCCCEEEEeCCCCcCCccCHHHHHHHHhC-CCEEEE----
Q psy11975 532 LTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHH-ENIRGV---- 606 (786)
Q Consensus 532 LAr~Ae~aGADAVmViPPyY~kps~S~eeLv~YFraIAeAtdLPIiLYNiP~~TGv~LSpelL~rLAei-PNVVGI---- 606 (786)
.++.++++|+|+|++.-.-- ... .+++.++++... ..++.++ +..+. .+.+.++.+. +.++++
T Consensus 77 ~~~~l~~~G~~~vii~~ser-~~~--~~e~~~~v~~a~-~~Gl~~I-~~v~~-------~~~~~~~~~~~~~~I~~~p~~ 144 (223)
T PRK04302 77 LPEAVKDAGAVGTLINHSER-RLT--LADIEAVVERAK-KLGLESV-VCVNN-------PETSAAAAALGPDYVAVEPPE 144 (223)
T ss_pred HHHHHHHcCCCEEEEecccc-ccC--HHHHHHHHHHHH-HCCCeEE-EEcCC-------HHHHHHHhcCCCCEEEEeCcc
Confidence 37778889999998885310 111 455666665544 4687666 45442 4566666653 456663
Q ss_pred -----EeC---CHHHH---HHHHhhcCCCCEEEEeCCc----chhhhhhccCCccccccccccccHHHHHHHHHH
Q psy11975 607 -----KDT---DNIKL---ANMANQTKDLNFSVFAGSA----GYLLSGLLVGCAGGINALSAVLGGPICELYDLA 666 (786)
Q Consensus 607 -----KDS---Dl~ri---~~ll~~~~~~df~Vf~G~D----elLL~aL~~GAdG~Isg~aN~~Pel~vaL~eA~ 666 (786)
+.. +...+ .+.+++ ...++.|+.|.. +.....+..|++|++.|.+.+-.+-+.++.+.+
T Consensus 145 ~igt~~~~~~~~~~~i~~~~~~ir~-~~~~~pvi~GggI~~~e~~~~~~~~gadGvlVGsa~l~~~~~~~~~~~~ 218 (223)
T PRK04302 145 LIGTGIPVSKAKPEVVEDAVEAVKK-VNPDVKVLCGAGISTGEDVKAALELGADGVLLASGVVKAKDPEAALRDL 218 (223)
T ss_pred ccccCCCCCcCCHHHHHHHHHHHHh-ccCCCEEEEECCCCCHHHHHHHHcCCCCEEEEehHHhCCcCHHHHHHHH
Confidence 111 23333 333442 123566666653 234456679999999998876555555555443
No 122
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=81.83 E-value=10 Score=41.04 Aligned_cols=125 Identities=12% Similarity=0.048 Sum_probs=79.0
Q ss_pred CCCeEEEeCCCCCHHH--HHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHhcCCCCEEEEeCCCCcCCccC
Q psy11975 513 WQADLLKPQKHTTTRA--TIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDIS 590 (786)
Q Consensus 513 GRVPVIaGVGa~ST~E--AIELAr~Ae~aGADAVmViPPyY~kps~S~eeLv~YFraIAeAtdLPIiLYNiP~~TGv~LS 590 (786)
-.+|+|+=...+.... .-++++.|+++|+|++++.-=. .|+- +-|...++..++.++..=.|. .+
T Consensus 86 ~~~pivlm~Y~N~i~~~G~e~F~~~~~~aGvdGlIipDLP-------~ee~-~~~~~~~~~~gl~~I~lv~p~-----t~ 152 (259)
T PF00290_consen 86 PDIPIVLMTYYNPIFQYGIERFFKEAKEAGVDGLIIPDLP-------PEES-EELREAAKKHGLDLIPLVAPT-----TP 152 (259)
T ss_dssp TSSEEEEEE-HHHHHHH-HHHHHHHHHHHTEEEEEETTSB-------GGGH-HHHHHHHHHTT-EEEEEEETT-----S-
T ss_pred CCCCEEEEeeccHHhccchHHHHHHHHHcCCCEEEEcCCC-------hHHH-HHHHHHHHHcCCeEEEEECCC-----CC
Confidence 3689988766654432 3458999999999999987522 2233 344567788899998888774 46
Q ss_pred HHHHHHHHh-CCCEEEEEe---------C---CHHHHHHHHhhcCCCCEEEEeCCcc---hhhhhhccCCcccccccc
Q psy11975 591 VDTLVKLAH-HENIRGVKD---------T---DNIKLANMANQTKDLNFSVFAGSAG---YLLSGLLVGCAGGINALS 652 (786)
Q Consensus 591 pelL~rLAe-iPNVVGIKD---------S---Dl~ri~~ll~~~~~~df~Vf~G~De---lLL~aL~~GAdG~Isg~a 652 (786)
.+-+.++++ -..++++=- . ++..+.+.+++. .+.-++.|.+- --...+..|+||+|-|++
T Consensus 153 ~~Ri~~i~~~a~gFiY~vs~~GvTG~~~~~~~~l~~~i~~ik~~--~~~Pv~vGFGI~~~e~~~~~~~~aDGvIVGSa 228 (259)
T PF00290_consen 153 EERIKKIAKQASGFIYLVSRMGVTGSRTELPDELKEFIKRIKKH--TDLPVAVGFGISTPEQAKKLAAGADGVIVGSA 228 (259)
T ss_dssp HHHHHHHHHH-SSEEEEESSSSSSSTTSSCHHHHHHHHHHHHHT--TSS-EEEESSS-SHHHHHHHHTTSSEEEESHH
T ss_pred HHHHHHHHHhCCcEEEeeccCCCCCCcccchHHHHHHHHHHHhh--cCcceEEecCCCCHHHHHHHHccCCEEEECHH
Confidence 788999885 477777641 1 123333333322 36677777762 234455699999999974
No 123
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=81.67 E-value=20 Score=37.75 Aligned_cols=132 Identities=11% Similarity=0.004 Sum_probs=77.3
Q ss_pred EEEeCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHhcCCCCEEEEeCCCCcCCccCHHHHHH
Q psy11975 517 LLKPQKHTTTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVK 596 (786)
Q Consensus 517 VIaGVGa~ST~EAIELAr~Ae~aGADAVmViPPyY~kps~S~eeLv~YFraIAeAtdLPIiLYNiP~~TGv~LSpelL~r 596 (786)
+++|+|.-.+. +.++.|.++||+-++.. .+ .++++++..+ |++|..-|+ +++..+.+
T Consensus 67 ~~IGAGTVl~~---~~a~~a~~aGA~FivsP--~~------~~~vi~~a~~-----------~~i~~iPG~-~TptEi~~ 123 (212)
T PRK05718 67 ALIGAGTVLNP---EQLAQAIEAGAQFIVSP--GL------TPPLLKAAQE-----------GPIPLIPGV-STPSELML 123 (212)
T ss_pred CEEEEeeccCH---HHHHHHHHcCCCEEECC--CC------CHHHHHHHHH-----------cCCCEeCCC-CCHHHHHH
Confidence 66777775555 77899999999976543 22 3478888776 555544454 56666666
Q ss_pred HHhCC-CEEEEEeC----CHHHHHHHHhhcCCCCEE--EEeCCcc-hhhhhhccCCccccccccccccHHHHHHHHHHHc
Q psy11975 597 LAHHE-NIRGVKDT----DNIKLANMANQTKDLNFS--VFAGSAG-YLLSGLLVGCAGGINALSAVLGGPICELYDLAKA 668 (786)
Q Consensus 597 LAeiP-NVVGIKDS----Dl~ri~~ll~~~~~~df~--Vf~G~De-lLL~aL~~GAdG~Isg~aN~~Pel~vaL~eA~~a 668 (786)
..+.. .++-+-+. .+..+..+.. .-+++. .-.|-+. .+-+.+.+|+..+++ .++++++. +..+
T Consensus 124 a~~~Ga~~vKlFPa~~~gg~~~lk~l~~--p~p~~~~~ptGGV~~~ni~~~l~ag~v~~vg-gs~L~~~~------~~~~ 194 (212)
T PRK05718 124 GMELGLRTFKFFPAEASGGVKMLKALAG--PFPDVRFCPTGGISPANYRDYLALPNVLCIG-GSWMVPKD------AIEN 194 (212)
T ss_pred HHHCCCCEEEEccchhccCHHHHHHHhc--cCCCCeEEEeCCCCHHHHHHHHhCCCEEEEE-ChHhCCcc------hhcc
Confidence 55542 45444444 2455555543 223444 4445543 466777888655555 45566533 2456
Q ss_pred CCHHHHHHHHHH
Q psy11975 669 GKWEEAMKLQHR 680 (786)
Q Consensus 669 GD~eeAreLQ~r 680 (786)
+|+++..+.-++
T Consensus 195 ~~~~~i~~~a~~ 206 (212)
T PRK05718 195 GDWDRITRLARE 206 (212)
T ss_pred ccHHHHHHHHHH
Confidence 777665554433
No 124
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=81.21 E-value=8 Score=43.07 Aligned_cols=72 Identities=15% Similarity=0.045 Sum_probs=50.1
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEEEcC-----CCCCCC-CCCHHHHHHHHHHHHhcCCCCEEEEeCCCCcCCccCHHHHHH
Q psy11975 523 HTTTRATIDLTQKAAKAGANAALILC-----PYYFQK-KMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVK 596 (786)
Q Consensus 523 a~ST~EAIELAr~Ae~aGADAVmViP-----PyY~kp-s~S~eeLv~YFraIAeAtdLPIiLYNiP~~TGv~LSpelL~r 596 (786)
+.+.++++++++..+++|+|.+-+.. |..... .........+.++|.+++++||+. .|.-.+++.+.+
T Consensus 220 g~~~~e~~~i~~~Le~~G~d~i~vs~g~~e~~~~~~~~~~~~~~~~~~~~~ik~~v~iPVi~------~G~i~~~~~a~~ 293 (353)
T cd02930 220 GSTWEEVVALAKALEAAGADILNTGIGWHEARVPTIATSVPRGAFAWATAKLKRAVDIPVIA------SNRINTPEVAER 293 (353)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEeCCCcCCCCCccccccCCchhhHHHHHHHHHhCCCCEEE------cCCCCCHHHHHH
Confidence 46889999999999999999998842 211000 001223456678888888999886 355567888888
Q ss_pred HHhC
Q psy11975 597 LAHH 600 (786)
Q Consensus 597 LAei 600 (786)
+.+.
T Consensus 294 ~i~~ 297 (353)
T cd02930 294 LLAD 297 (353)
T ss_pred HHHC
Confidence 8753
No 125
>cd08208 RLP_Photo Ribulose bisphosphate carboxylase like proteins from phototrophic bacteria. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions. The specific function of this subgroup is unknown.
Probab=80.87 E-value=12 Score=43.38 Aligned_cols=59 Identities=19% Similarity=0.165 Sum_probs=42.9
Q ss_pred cCCCCeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHhcCCCCEEEE
Q psy11975 511 REWQADLLKPQKHTTTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIY 579 (786)
Q Consensus 511 vaGRVPVIaGVGa~ST~EAIELAr~Ae~aGADAVmViPPyY~kps~S~eeLv~YFraIAeAtdLPIiLY 579 (786)
++.+.-..+++++ .+++.++.++.|+++|+.++|+-+-.+ + +.-++.+++.+++||..+
T Consensus 225 TG~~~~ya~NiT~-~~~em~~ra~~a~~~G~~~vmv~~~~~---G------~~al~~L~~~~~l~ihaH 283 (424)
T cd08208 225 TGVPKIYLANITD-EVDRLMELHDVAVRNGANALLINAMPV---G------LSAVRMLRKHAQVPLIAH 283 (424)
T ss_pred hCCcceEEEEccC-CHHHHHHHHHHHHHhCCCEEEEeeecc---c------HHHHHHHHhcCCCeEEec
Confidence 4444445569998 699999999999999999999985433 2 223555666667887654
No 126
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=80.65 E-value=45 Score=36.26 Aligned_cols=101 Identities=12% Similarity=0.063 Sum_probs=65.4
Q ss_pred CCCCeEEEeCCC-CCHHHHHHHHHHHHHcCCCEEEEc------CCCCCCCCCCHHHHHHHHHHHHhcCCCCEEE------
Q psy11975 512 EWQADLLKPQKH-TTTRATIDLTQKAAKAGANAALIL------CPYYFQKKMTEDLIYEHFISVADNSPIPVII------ 578 (786)
Q Consensus 512 aGRVPVIaGVGa-~ST~EAIELAr~Ae~aGADAVmVi------PPyY~kps~S~eeLv~YFraIAeAtdLPIiL------ 578 (786)
++++-||+|-.. .+.+.+++.|+..+++|+..+-.- .|+-|..- .++-+..++++++..++|++-
T Consensus 25 ~~~~~~iaGPCsie~~~~~~~~A~~lk~~g~~~~r~~~~kpRTs~~s~~G~--g~~gl~~l~~~~~~~Gl~~~te~~d~~ 102 (266)
T PRK13398 25 GEEKIIIAGPCAVESEEQMVKVAEKLKELGVHMLRGGAFKPRTSPYSFQGL--GEEGLKILKEVGDKYNLPVVTEVMDTR 102 (266)
T ss_pred CCCEEEEEeCCcCCCHHHHHHHHHHHHHcCCCEEEEeeecCCCCCCccCCc--HHHHHHHHHHHHHHcCCCEEEeeCChh
Confidence 357788998766 488899999999999999955554 25444422 344566677888888999874
Q ss_pred -----------EeCCCCcCCccCHHHHHHHHhCCCEEEEEeC---CHHHHHH
Q psy11975 579 -----------YNNTFVTNIDISVDTLVKLAHHENIRGVKDT---DNIKLAN 616 (786)
Q Consensus 579 -----------YNiP~~TGv~LSpelL~rLAeiPNVVGIKDS---Dl~ri~~ 616 (786)
|-+++++ .-..+++.++++...-+++|-. ++..+..
T Consensus 103 ~~~~l~~~vd~~kIga~~--~~n~~LL~~~a~~gkPV~lk~G~~~s~~e~~~ 152 (266)
T PRK13398 103 DVEEVADYADMLQIGSRN--MQNFELLKEVGKTKKPILLKRGMSATLEEWLY 152 (266)
T ss_pred hHHHHHHhCCEEEECccc--ccCHHHHHHHhcCCCcEEEeCCCCCCHHHHHH
Confidence 2233221 1224566666666666777766 4444433
No 127
>TIGR02317 prpB methylisocitrate lyase. Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus.
Probab=80.63 E-value=14 Score=40.50 Aligned_cols=64 Identities=16% Similarity=0.147 Sum_probs=41.1
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHhcCCCCEEEEeCCCCcCCccCHHHHHHH
Q psy11975 524 TTTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKL 597 (786)
Q Consensus 524 ~ST~EAIELAr~Ae~aGADAVmViPPyY~kps~S~eeLv~YFraIAeAtdLPIiLYNiP~~TGv~LSpelL~rL 597 (786)
...+|+|+.++.++++|||+|.+-.+. +.+++. .++++.++|+++--.....-..++.+.|.+|
T Consensus 158 ~g~deAI~Ra~ay~~AGAD~vfi~g~~------~~e~i~----~~~~~i~~Pl~~n~~~~~~~p~~s~~eL~~l 221 (285)
T TIGR02317 158 EGLDAAIERAKAYVEAGADMIFPEALT------SLEEFR----QFAKAVKVPLLANMTEFGKTPLFTADELREA 221 (285)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEeCCCC------CHHHHH----HHHHhcCCCEEEEeccCCCCCCCCHHHHHHc
Confidence 458999999999999999999986421 356654 4555566887432111101123566666666
No 128
>TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase. This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization.
Probab=79.84 E-value=14 Score=40.83 Aligned_cols=63 Identities=14% Similarity=0.127 Sum_probs=40.9
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHhcCCCCEEEEeCCCCcCC-ccCHHHHHHH
Q psy11975 524 TTTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNI-DISVDTLVKL 597 (786)
Q Consensus 524 ~ST~EAIELAr~Ae~aGADAVmViPPyY~kps~S~eeLv~YFraIAeAtdLPIiLYNiP~~TGv-~LSpelL~rL 597 (786)
...+|+|+.++.+.++|||+|.+-.+ . +.+++.+ ++++.+.|+++ |+=...+. .++.+.|.+|
T Consensus 162 ~g~deaI~Ra~aY~eAGAD~ifi~~~----~--~~~ei~~----~~~~~~~P~~~-nv~~~~~~p~~s~~eL~~l 225 (294)
T TIGR02319 162 FGLDEAIRRSREYVAAGADCIFLEAM----L--DVEEMKR----VRDEIDAPLLA-NMVEGGKTPWLTTKELESI 225 (294)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEecCC----C--CHHHHHH----HHHhcCCCeeE-EEEecCCCCCCCHHHHHHc
Confidence 46899999999999999999998532 2 3666554 44455678632 22111122 3566666666
No 129
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=79.64 E-value=12 Score=39.67 Aligned_cols=133 Identities=12% Similarity=0.022 Sum_probs=69.7
Q ss_pred CCeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHH--HHHHhcCC-------CCEEEEeCCCC
Q psy11975 514 QADLLKPQKHTTTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHF--ISVADNSP-------IPVIIYNNTFV 584 (786)
Q Consensus 514 RVPVIaGVGa~ST~EAIELAr~Ae~aGADAVmViPPyY~kps~S~eeLv~YF--raIAeAtd-------LPIiLYNiP~~ 584 (786)
++||+++-|-.+.+++.++.. .||++|++-...+..|. --+++.+.| +.|.-..+ -|+.++..-..
T Consensus 74 ~ipv~~~GGi~s~~~~~~~l~----~Ga~~Viigt~~l~~p~-~~~ei~~~~g~~~iv~slD~~~~~~~~~~~v~~~~~~ 148 (253)
T PRK02083 74 FIPLTVGGGIRSVEDARRLLR----AGADKVSINSAAVANPE-LISEAADRFGSQCIVVAIDAKRDPEPGRWEVYTHGGR 148 (253)
T ss_pred CCCEEeeCCCCCHHHHHHHHH----cCCCEEEEChhHhhCcH-HHHHHHHHcCCCCEEEEEEeccCCCCCCEEEEEcCCc
Confidence 479999888777777666544 69999999877665432 122222222 11111122 23333332222
Q ss_pred cCCccCHHHH-HHHHhC--CCEEE-------EEeC-CHHHHHHHHhhcCCCCEEEEeCCc--c--hhhhhhc-cCCcccc
Q psy11975 585 TNIDISVDTL-VKLAHH--ENIRG-------VKDT-DNIKLANMANQTKDLNFSVFAGSA--G--YLLSGLL-VGCAGGI 648 (786)
Q Consensus 585 TGv~LSpelL-~rLAei--PNVVG-------IKDS-Dl~ri~~ll~~~~~~df~Vf~G~D--e--lLL~aL~-~GAdG~I 648 (786)
....++...+ .++.+. ..|+. .+.. |+..+.++.+. . ++.|+.+.+ . -+...+. .|++|++
T Consensus 149 ~~~~~~~~~~~~~~~~~g~~~ii~~~i~~~g~~~g~d~~~i~~~~~~-~--~ipvia~GGv~s~~d~~~~~~~~G~~gvi 225 (253)
T PRK02083 149 KPTGLDAVEWAKEVEELGAGEILLTSMDRDGTKNGYDLELTRAVSDA-V--NVPVIASGGAGNLEHFVEAFTEGGADAAL 225 (253)
T ss_pred eecCCCHHHHHHHHHHcCCCEEEEcCCcCCCCCCCcCHHHHHHHHhh-C--CCCEEEECCCCCHHHHHHHHHhCCccEEe
Confidence 2234455444 444433 33322 2223 77777777652 2 233333322 2 2556665 5999999
Q ss_pred cccccc
Q psy11975 649 NALSAV 654 (786)
Q Consensus 649 sg~aN~ 654 (786)
.|.+-.
T Consensus 226 vg~al~ 231 (253)
T PRK02083 226 AASIFH 231 (253)
T ss_pred EhHHHH
Confidence 987643
No 130
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=79.23 E-value=40 Score=36.05 Aligned_cols=138 Identities=12% Similarity=-0.022 Sum_probs=83.4
Q ss_pred CCCeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEcC--CCC--C----C--CCCCHHHHHHHHHHHHhcCCCCEEEEeCC
Q psy11975 513 WQADLLKPQKHTTTRATIDLTQKAAKAGANAALILC--PYY--F----Q--KKMTEDLIYEHFISVADNSPIPVIIYNNT 582 (786)
Q Consensus 513 GRVPVIaGVGa~ST~EAIELAr~Ae~aGADAVmViP--PyY--~----k--ps~S~eeLv~YFraIAeAtdLPIiLYNiP 582 (786)
.+.|||+.+++.+.++.++.++..++ ++|++=+-. |.- . . .-.+.+-+.+..+++. ..++||.+==-|
T Consensus 66 ~~~~vivnv~~~~~ee~~~~a~~v~~-~~d~IdiN~gCP~~~v~~~g~G~~Ll~dp~~l~~iv~av~-~~~~PVsvKiR~ 143 (231)
T TIGR00736 66 SRALVSVNVRFVDLEEAYDVLLTIAE-HADIIEINAHCRQPEITEIGIGQELLKNKELLKEFLTKMK-ELNKPIFVKIRG 143 (231)
T ss_pred hcCCEEEEEecCCHHHHHHHHHHHhc-CCCEEEEECCCCcHHHcCCCCchhhcCCHHHHHHHHHHHH-cCCCcEEEEeCC
Confidence 35699999999999999999999977 899887643 320 0 0 0014777888888887 458998887655
Q ss_pred CCcCCccCHHHHHHHHhCCCEEEEEe-C--------CHHHHHHHHhhcCCCCEE-EEeCCc---chhhhhhccCCccccc
Q psy11975 583 FVTNIDISVDTLVKLAHHENIRGVKD-T--------DNIKLANMANQTKDLNFS-VFAGSA---GYLLSGLLVGCAGGIN 649 (786)
Q Consensus 583 ~~TGv~LSpelL~rLAeiPNVVGIKD-S--------Dl~ri~~ll~~~~~~df~-Vf~G~D---elLL~aL~~GAdG~Is 649 (786)
.... .....+.+.++--++-+|.- . ++..+.++.+ ..+ ++. |-+|.= +.....+..||+|++.
T Consensus 144 ~~~~--~~~~~~a~~l~~aGad~i~Vd~~~~g~~~a~~~~I~~i~~-~~~-~ipIIgNGgI~s~eda~e~l~~GAd~Vmv 219 (231)
T TIGR00736 144 NCIP--LDELIDALNLVDDGFDGIHVDAMYPGKPYADMDLLKILSE-EFN-DKIIIGNNSIDDIESAKEMLKAGADFVSV 219 (231)
T ss_pred CCCc--chHHHHHHHHHHcCCCEEEEeeCCCCCchhhHHHHHHHHH-hcC-CCcEEEECCcCCHHHHHHHHHhCCCeEEE
Confidence 4321 22334444432122222211 1 3555666554 221 233 333321 2356677789999999
Q ss_pred ccccccc
Q psy11975 650 ALSAVLG 656 (786)
Q Consensus 650 g~aN~~P 656 (786)
+-+.+.+
T Consensus 220 gR~~l~~ 226 (231)
T TIGR00736 220 ARAILKG 226 (231)
T ss_pred cHhhccC
Confidence 9876654
No 131
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=79.19 E-value=60 Score=32.88 Aligned_cols=125 Identities=17% Similarity=0.080 Sum_probs=66.7
Q ss_pred CeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHhcCCCCEEEE-eCCCCcCCccCHHH
Q psy11975 515 ADLLKPQKHTTTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIY-NNTFVTNIDISVDT 593 (786)
Q Consensus 515 VPVIaGVGa~ST~EAIELAr~Ae~aGADAVmViPPyY~kps~S~eeLv~YFraIAeAtdLPIiLY-NiP~~TGv~LSpel 593 (786)
..+++++--.+... ..++.+.++|||.+.+.. ..+..+..+++++ +...++++++- -.|. + +.+.
T Consensus 53 ~~i~~d~k~~d~~~--~~~~~~~~~Gad~i~vh~---~~~~~~~~~~i~~----~~~~g~~~~~~~~~~~-t----~~~~ 118 (206)
T TIGR03128 53 RKVLADLKTMDAGE--YEAEQAFAAGADIVTVLG---VADDATIKGAVKA----AKKHGKEVQVDLINVK-D----KVKR 118 (206)
T ss_pred CEEEEEEeeccchH--HHHHHHHHcCCCEEEEec---cCCHHHHHHHHHH----HHHcCCEEEEEecCCC-C----hHHH
Confidence 45666542222221 147888999999888552 2221012333333 44568999874 2332 1 3455
Q ss_pred HHHHHh-CCCEEEEEe-------C--CHHHHHHHHhhcCCCCEEEEeCCc-chhhhhhccCCccccccccc
Q psy11975 594 LVKLAH-HENIRGVKD-------T--DNIKLANMANQTKDLNFSVFAGSA-GYLLSGLLVGCAGGINALSA 653 (786)
Q Consensus 594 L~rLAe-iPNVVGIKD-------S--Dl~ri~~ll~~~~~~df~Vf~G~D-elLL~aL~~GAdG~Isg~aN 653 (786)
+..+.+ -..++++-- . .+..+.++.+......+.+-.|-. +.+-..+..|+++++.|.+-
T Consensus 119 ~~~~~~~g~d~v~~~pg~~~~~~~~~~~~~i~~l~~~~~~~~i~v~GGI~~~n~~~~~~~Ga~~v~vGsai 189 (206)
T TIGR03128 119 AKELKELGADYIGVHTGLDEQAKGQNPFEDLQTILKLVKEARVAVAGGINLDTIPDVIKLGPDIVIVGGAI 189 (206)
T ss_pred HHHHHHcCCCEEEEcCCcCcccCCCCCHHHHHHHHHhcCCCcEEEECCcCHHHHHHHHHcCCCEEEEeehh
Confidence 555554 244555421 1 345556555422233444444544 24667788999999988763
No 132
>smart00333 TUDOR Tudor domain. Domain of unknown function present in several RNA-binding proteins. 10 copies in the Drosophila Tudor protein. Initial proposal that the survival motor neuron gene product contain a Tudor domain are corroborated by more recent database search techniques such as PSI-BLAST (unpublished).
Probab=79.09 E-value=2 Score=34.82 Aligned_cols=53 Identities=19% Similarity=0.172 Sum_probs=43.3
Q ss_pred CCCCCceEEEecccCCCCCccccCCCCCCCcEEEEEeCCCCCcccccccccccccc
Q psy11975 356 GLAEGDLVWGSVKGYPSWPGKLISPAPTQGRVWVKWFGMSNEPLSEVEPATLKSLS 411 (786)
Q Consensus 356 ~f~vGDLVWaKvkG~PwWPg~V~~~~~~~g~~~V~fFG~~~~a~s~V~~k~LkpFs 411 (786)
.|.+|++|=++...=-|..|+|.+.... +.+.|.|...+. ..+|+.++|+++-
T Consensus 2 ~~~~G~~~~a~~~d~~wyra~I~~~~~~-~~~~V~f~D~G~--~~~v~~~~l~~l~ 54 (57)
T smart00333 2 TFKVGDKVAARWEDGEWYRARIIKVDGE-QLYEVFFIDYGN--EEVVPPSDLRPLP 54 (57)
T ss_pred CCCCCCEEEEEeCCCCEEEEEEEEECCC-CEEEEEEECCCc--cEEEeHHHeecCC
Confidence 5889999999985667999999998765 889999999885 3557778887753
No 133
>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds. Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).
Probab=79.02 E-value=25 Score=37.70 Aligned_cols=75 Identities=17% Similarity=0.140 Sum_probs=54.0
Q ss_pred HHHHHHHcCCCEEEEcCCCC----CCCC---CCHHHHHHHHHHHHhcCCCCEEEEeCCCCcCCccCHHH----HHHHHhC
Q psy11975 532 LTQKAAKAGANAALILCPYY----FQKK---MTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDT----LVKLAHH 600 (786)
Q Consensus 532 LAr~Ae~aGADAVmViPPyY----~kps---~S~eeLv~YFraIAeAtdLPIiLYNiP~~TGv~LSpel----L~rLAei 600 (786)
.|+.++++|+|++++..-.. -.++ ++-++++.+.+.|+++++.+.++=|+|.-+|. +++. +.++.+
T Consensus 24 sA~i~e~aG~dai~v~~s~~a~~~G~pD~~~vtl~em~~~~~~I~r~~~~~pviaD~~~G~g~--~~~~~~~~~~~l~~- 100 (240)
T cd06556 24 MAKQFADAGLNVMLVGDSQGMTVAGYDDTLPYPVNDVPYHVRAVRRGAPLALIVADLPFGAYG--APTAAFELAKTFMR- 100 (240)
T ss_pred HHHHHHHcCCCEEEEChHHHHHhcCCCCCCCcCHHHHHHHHHHHHhhCCCCCEEEeCCCCCCc--CHHHHHHHHHHHHH-
Confidence 46677788999999876321 1122 47999999999999999865566788866554 4333 455555
Q ss_pred CCEEEEEeC
Q psy11975 601 ENIRGVKDT 609 (786)
Q Consensus 601 PNVVGIKDS 609 (786)
-.+.|||.+
T Consensus 101 aGa~gv~iE 109 (240)
T cd06556 101 AGAAGVKIE 109 (240)
T ss_pred cCCcEEEEc
Confidence 679999999
No 134
>cd08148 RuBisCO_large Ribulose bisphosphate carboxylase large chain. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions.
Probab=78.35 E-value=16 Score=41.63 Aligned_cols=131 Identities=18% Similarity=0.147 Sum_probs=72.9
Q ss_pred cCCCCeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHhc--CCCCEEEEeCCCCcCC-
Q psy11975 511 REWQADLLKPQKHTTTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADN--SPIPVIIYNNTFVTNI- 587 (786)
Q Consensus 511 vaGRVPVIaGVGa~ST~EAIELAr~Ae~aGADAVmViPPyY~kps~S~eeLv~YFraIAeA--tdLPIiLYNiP~~TGv- 587 (786)
++.+.--.+++++. ++|.++.++.|+++|+.++|+-+-.+ .. .-++.+++. .++||..+-. ..|.
T Consensus 192 TG~~~~y~~NiT~~-~~em~~ra~~~~~~G~~~~mv~~~~~-G~--------~~l~~l~~~~~~~l~IhaHrA--~~ga~ 259 (366)
T cd08148 192 TGEKKLYAVNVTAG-TFEIIERAERALELGANMLMVDVLTA-GF--------SALQALAEDFEIDLPIHVHRA--MHGAV 259 (366)
T ss_pred hCCcceEEEEccCC-HHHHHHHHHHHHHhCCCEEEEecccc-ch--------HHHHHHHHhCcCCcEEEeccc--ccccc
Confidence 44444456799874 59999999999999999999986433 22 224555543 4677765533 2221
Q ss_pred ------ccCHHHHHHH---H--h---CCCEEEEEeC-CHH---HHHHHHhhcC---CCCEEEEeCCcch-hhh-hh-ccC
Q psy11975 588 ------DISVDTLVKL---A--H---HENIRGVKDT-DNI---KLANMANQTK---DLNFSVFAGSAGY-LLS-GL-LVG 643 (786)
Q Consensus 588 ------~LSpelL~rL---A--e---iPNVVGIKDS-Dl~---ri~~ll~~~~---~~df~Vf~G~Del-LL~-aL-~~G 643 (786)
.++.-++.+| + + +|++.| |.. +.+ ++.+.+++.. .+-|-|..|.-.. .++ .+ ..|
T Consensus 260 ~~~~~~G~~~~~l~kl~RLaGaD~~~~~t~~G-k~~~~~~~~~~~~~~~~~~~~~~k~~~Pv~sgG~~~~~vp~~~~~~G 338 (366)
T cd08148 260 TRSKFHGISMLVLAKLLRMAGGDFIHTGTVVG-KMALEREEALGIADALTDDWAGFKRVFPVASGGIHPGLVPGILRDFG 338 (366)
T ss_pred ccCCCCCcCHHHHHHHHHHcCCCccccCCccc-CcCCCHHHHHHHHHHHhCcccCCCCceEeccCCCChhHHHHHHHHhC
Confidence 2555555555 4 2 478855 556 433 3333333111 2346677766432 233 22 256
Q ss_pred Ccccccccccc
Q psy11975 644 CAGGINALSAV 654 (786)
Q Consensus 644 AdG~Isg~aN~ 654 (786)
-|=++...+.+
T Consensus 339 ~Dvil~~GGgi 349 (366)
T cd08148 339 IDVILQAGGGI 349 (366)
T ss_pred CcEEEEcCccc
Confidence 55444444444
No 135
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=77.51 E-value=6.8 Score=40.66 Aligned_cols=53 Identities=11% Similarity=0.132 Sum_probs=43.5
Q ss_pred CCeEEE--eCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHH
Q psy11975 514 QADLLK--PQKHTTTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISV 568 (786)
Q Consensus 514 RVPVIa--GVGa~ST~EAIELAr~Ae~aGADAVmViPPyY~kps~S~eeLv~YFraI 568 (786)
++||++ |++..+.+++++.++.+.++||+++++..-.+..++ +.+.++-++++
T Consensus 179 ~~pvv~~GG~~~~~~~~~l~~~~~~~~~Ga~gv~vg~~i~~~~d--p~~~~~~~~~~ 233 (235)
T cd00958 179 PVPVVIAGGPKKDSEEEFLKMVYDAMEAGAAGVAVGRNIFQRPD--PVAMLRAISAV 233 (235)
T ss_pred CCCEEEeCCCCCCCHHHHHHHHHHHHHcCCcEEEechhhhcCCC--HHHHHHHHHHH
Confidence 467665 456678999999999999999999999998887765 78887777765
No 136
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=76.99 E-value=1e+02 Score=34.77 Aligned_cols=83 Identities=17% Similarity=0.118 Sum_probs=52.7
Q ss_pred CCCeEEEeCCCCCHH--HHHHHHHHHHHcCCCEEEEcCCCC---CCCC--CCHHHHHHHHHHHHhcCCCCEEEEeCCCCc
Q psy11975 513 WQADLLKPQKHTTTR--ATIDLTQKAAKAGANAALILCPYY---FQKK--MTEDLIYEHFISVADNSPIPVIIYNNTFVT 585 (786)
Q Consensus 513 GRVPVIaGVGa~ST~--EAIELAr~Ae~aGADAVmViPPyY---~kps--~S~eeLv~YFraIAeAtdLPIiLYNiP~~T 585 (786)
...||++.+++.... +.-+..+.++.++|||+-+--+.- ..+. .+.+.+++.+++|.+.+++||++=-.
T Consensus 119 p~~p~~aNl~~~~~~~~~~~~~~~~~~~~~adal~l~l~~~qe~~~p~g~~~f~~~le~i~~i~~~~~vPVivK~~---- 194 (352)
T PRK05437 119 PDGLLFANLGAVQLYGYGVEEAQRAVEMIEADALQIHLNPLQELVQPEGDRDFRGWLDNIAEIVSALPVPVIVKEV---- 194 (352)
T ss_pred CCceEEeecCccccCCCCHHHHHHHHHhcCCCcEEEeCccchhhcCCCCcccHHHHHHHHHHHHHhhCCCEEEEeC----
Confidence 467999988886551 112233344556788887654221 1111 13455778899999988999998754
Q ss_pred CCccCHHHHHHHHh
Q psy11975 586 NIDISVDTLVKLAH 599 (786)
Q Consensus 586 Gv~LSpelL~rLAe 599 (786)
|..++.+....|.+
T Consensus 195 g~g~s~~~a~~l~~ 208 (352)
T PRK05437 195 GFGISKETAKRLAD 208 (352)
T ss_pred CCCCcHHHHHHHHH
Confidence 34577888888864
No 137
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=76.84 E-value=15 Score=39.55 Aligned_cols=62 Identities=21% Similarity=0.233 Sum_probs=42.1
Q ss_pred CCCCCHHHHHHHHHhCCCCCccCCCccccccCCCCCCCCCCCCCccccCCCCeEEEeCCCCCHHHHHHHHHHHHHcCCCE
Q psy11975 464 STSMPIQKRKSLLRKFPLWPELEPSTSELKRSDRPMSVGPRSVRPSEREWQADLLKPQKHTTTRATIDLTQKAAKAGANA 543 (786)
Q Consensus 464 ~~sLT~dER~~Lle~~~~wve~~a~~~e~~~~~~~~~~~~r~v~veevaGRVPVIaGVGa~ST~EAIELAr~Ae~aGADA 543 (786)
+..|+.++|+++++. +.+. +.+ ...+++-+.+ .--...++.+-|+++++.-++||+.
T Consensus 94 ~~~i~~~~~~rlI~~---~~~~-----g~~-------------v~~EvG~K~~--~~~~~~~~~~~i~~~~~~LeAGA~~ 150 (237)
T TIGR03849 94 SMEISLEERCNLIER---AKDN-----GFM-------------VLSEVGKKSP--EKDSELTPDDRIKLINKDLEAGADY 150 (237)
T ss_pred ccCCCHHHHHHHHHH---HHhC-----CCe-------------EeccccccCC--cccccCCHHHHHHHHHHHHHCCCcE
Confidence 478999999999998 4321 111 1123333332 1112457899999999999999999
Q ss_pred EEEcC
Q psy11975 544 ALILC 548 (786)
Q Consensus 544 VmViP 548 (786)
||+=.
T Consensus 151 ViiEa 155 (237)
T TIGR03849 151 VIIEG 155 (237)
T ss_pred EEEee
Confidence 99975
No 138
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=76.64 E-value=16 Score=41.74 Aligned_cols=71 Identities=17% Similarity=0.185 Sum_probs=50.8
Q ss_pred CCeEEEeCCC-CCHHHHHHHHHHHHHcCCCEEEE--cCCCCC---CC----CCCHHHHHHHHHHHHhcCCCCEEEEeCCC
Q psy11975 514 QADLLKPQKH-TTTRATIDLTQKAAKAGANAALI--LCPYYF---QK----KMTEDLIYEHFISVADNSPIPVIIYNNTF 583 (786)
Q Consensus 514 RVPVIaGVGa-~ST~EAIELAr~Ae~aGADAVmV--iPPyY~---kp----s~S~eeLv~YFraIAeAtdLPIiLYNiP~ 583 (786)
.+|||+.+.. .+.++-+++++..+++|||++-+ ..|..- .. ..+.+.+.+..+.|-+.+++||++==-|.
T Consensus 113 ~~pvIaSi~~~~s~~~~~~~a~~~e~~GaD~iELNiSCPn~~~~r~~g~~~gq~~e~~~~i~~~Vk~~~~iPv~vKLsPn 192 (385)
T PLN02495 113 DRILIASIMEEYNKDAWEEIIERVEETGVDALEINFSCPHGMPERKMGAAVGQDCDLLEEVCGWINAKATVPVWAKMTPN 192 (385)
T ss_pred CCcEEEEccCCCCHHHHHHHHHHHHhcCCCEEEEECCCCCCCCcCccchhhccCHHHHHHHHHHHHHhhcCceEEEeCCC
Confidence 5799999954 89999999999999999999986 334431 10 11355666666777666678888766664
Q ss_pred C
Q psy11975 584 V 584 (786)
Q Consensus 584 ~ 584 (786)
.
T Consensus 193 ~ 193 (385)
T PLN02495 193 I 193 (385)
T ss_pred h
Confidence 3
No 139
>cd00717 URO-D Uroporphyrinogen decarboxylase (URO-D) is a dimeric cytosolic enzyme that decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, without requiring any prosthetic groups or cofactors. This reaction is located at the branching point of the tetrapyrrole biosynthetic pathway, leading to the biosynthesis of heme, chlorophyll or bacteriochlorophyll. URO-D deficiency is responsible for the human genetic diseases familial porphyria cutanea tarda (fPCT) and hepatoerythropoietic porphyria (HEP).
Probab=76.51 E-value=62 Score=35.52 Aligned_cols=130 Identities=18% Similarity=0.131 Sum_probs=74.7
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHH----HHHHHHHhcC-----CCCEEEEeCCCCcCCccCHHHHH
Q psy11975 525 TTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIY----EHFISVADNS-----PIPVIIYNNTFVTNIDISVDTLV 595 (786)
Q Consensus 525 ST~EAIELAr~Ae~aGADAVmViPPyY~kps~S~eeLv----~YFraIAeAt-----dLPIiLYNiP~~TGv~LSpelL~ 595 (786)
.++..+++++...++|||++++.-|.... ++++... -|+++|.++. +.|+ +|.+- |. ...+.
T Consensus 175 it~~~~~~~~~~ieaGad~i~i~d~~~~~--lsp~~f~ef~~P~~k~i~~~i~~~~~~~~i-lh~cg---~~---~~~~~ 245 (335)
T cd00717 175 LTDATIEYLKAQIEAGAQAVQIFDSWAGA--LSPEDFEEFVLPYLKRIIEEVKKRLPGVPV-ILFAK---GA---GGLLE 245 (335)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeCccccc--CCHHHHHHHHHHHHHHHHHHHHHhCCCCCE-EEEcC---CC---HHHHH
Confidence 35667888888889999999988774322 3466655 4456777766 2344 44332 22 25677
Q ss_pred HHHhC-CCEEEEEeC-CHHHHHHHHhhcCCCCEEEEeCCcch------------hhhhhcc-CC-cccccccccccc---
Q psy11975 596 KLAHH-ENIRGVKDT-DNIKLANMANQTKDLNFSVFAGSAGY------------LLSGLLV-GC-AGGINALSAVLG--- 656 (786)
Q Consensus 596 rLAei-PNVVGIKDS-Dl~ri~~ll~~~~~~df~Vf~G~Del------------LL~aL~~-GA-dG~Isg~aN~~P--- 656 (786)
.+.+. .+++++=.. |+....+.+ +++..+..+.+.. ....+.. |. .|+|.+.++-+|
T Consensus 246 ~~~~~~~~~~s~d~~~dl~e~k~~~----g~~~~i~Gni~p~~l~~~~e~i~~~v~~~l~~~~~~~gfIl~~gc~i~~~t 321 (335)
T cd00717 246 DLAQLGADVVGLDWRVDLDEARKRL----GPKVALQGNLDPALLYAPKEAIEKEVKRILKAFGGAPGHIFNLGHGILPDT 321 (335)
T ss_pred HHHhcCCCEEEeCCCCCHHHHHHHh----CCCeEEEeCCChhhhcCCHHHHHHHHHHHHHHhCcCCCceeecCCcCCCCc
Confidence 77775 366666555 887765554 2344444444421 1112222 22 477777776544
Q ss_pred --HHHHHHHHHHH
Q psy11975 657 --GPICELYDLAK 667 (786)
Q Consensus 657 --el~vaL~eA~~ 667 (786)
+-+.+++++++
T Consensus 322 p~eNi~a~v~a~~ 334 (335)
T cd00717 322 PPENVKALVEAVH 334 (335)
T ss_pred CHHHHHHHHHHHh
Confidence 44555555543
No 140
>TIGR01464 hemE uroporphyrinogen decarboxylase. This model represents uroporphyrinogen decarboxylase (HemE), which converts uroporphyrinogen III to coproporphyrinogen III. This step takes the pathway toward protoporphyrin IX, a common precursor of both heme and chlorophyll, rather than toward precorrin 2 and its products.
Probab=76.46 E-value=63 Score=35.54 Aligned_cols=96 Identities=21% Similarity=0.189 Sum_probs=60.8
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHH----HHHHHHhcC-----CCCEEEEeCCCCcCCccCHHHHH
Q psy11975 525 TTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYE----HFISVADNS-----PIPVIIYNNTFVTNIDISVDTLV 595 (786)
Q Consensus 525 ST~EAIELAr~Ae~aGADAVmViPPyY~kps~S~eeLv~----YFraIAeAt-----dLPIiLYNiP~~TGv~LSpelL~ 595 (786)
.++..+++++...++|||++++.-|.... ++++...+ |+++|.++. +.|+ ++++-. + ...+.
T Consensus 178 ~t~~~~~~~~~~~eaGad~i~i~d~~~~~--lsp~~f~ef~~p~~k~i~~~i~~~~~~~~i-lh~cg~-~-----~~~~~ 248 (338)
T TIGR01464 178 LTDATIEYLVEQVKAGAQAVQIFDSWAGA--LSPEDFEEFVLPYLKKIIEEVKARLPNVPV-ILFAKG-A-----GHLLE 248 (338)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECCcccc--CCHHHHHHHHHHHHHHHHHHHHHhCCCCCE-EEEeCC-c-----HHHHH
Confidence 46778899998889999999988774322 34666554 446777665 3455 444321 1 24677
Q ss_pred HHHhCC-CEEEEEeC-CHHHHHHHHhhcCCCCEEEEeCCc
Q psy11975 596 KLAHHE-NIRGVKDT-DNIKLANMANQTKDLNFSVFAGSA 633 (786)
Q Consensus 596 rLAeiP-NVVGIKDS-Dl~ri~~ll~~~~~~df~Vf~G~D 633 (786)
.+++.+ +++++=.. |+....+.+ +++..++.+.|
T Consensus 249 ~~~~~~~~~~s~d~~~dl~e~~~~~----~~~~~i~Gni~ 284 (338)
T TIGR01464 249 ELAETGADVVGLDWTVDLKEARKRV----GPGVAIQGNLD 284 (338)
T ss_pred HHHhcCCCEEEeCCCCCHHHHHHHh----CCCeeEEeCCC
Confidence 777654 66666555 887665543 34556666555
No 141
>cd03307 Mta_CmuA_like MtaA_CmuA_like family. MtaA/CmuA, also MtsA, or methyltransferase 2 (MT2) MT2-A and MT2-M isozymes, are methylcobamide:Coenzyme M methyltransferases, which play a role in metabolic pathways of methane formation from various substrates, such as methylated amines and methanol. Coenzyme M, 2-mercaptoethylsulfonate or CoM, is methylated during methanogenesis in a reaction catalyzed by three proteins. A methyltransferase methylates the corrinoid cofactor, which is bound to a second polypeptide, a corrinoid protein. The methylated corrinoid protein then serves as a substrate for MT2-A and related enzymes, which methylate CoM.
Probab=76.33 E-value=65 Score=35.26 Aligned_cols=100 Identities=14% Similarity=0.100 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHH----HHHHHHHhcCC-CCEEEEeCCCCcCCccCHHHHHHHHhC
Q psy11975 526 TRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIY----EHFISVADNSP-IPVIIYNNTFVTNIDISVDTLVKLAHH 600 (786)
Q Consensus 526 T~EAIELAr~Ae~aGADAVmViPPyY~kps~S~eeLv----~YFraIAeAtd-LPIiLYNiP~~TGv~LSpelL~rLAei 600 (786)
++-.++.++...++|||++.+..|.-...-++++... .|+++|.++.. .|++++.+-. ....+..+.+.
T Consensus 170 t~~~~~~~~~~~eaGad~i~i~d~~a~~~~isp~~f~e~~~p~~k~i~~~i~~~~~ilh~cG~------~~~~l~~~~~~ 243 (326)
T cd03307 170 TEACIEYAKAQLEAGADIITIADPTASPELISPEFYEEFALPYHKKIVKELHGCPTILHICGN------TTPILEYIAQC 243 (326)
T ss_pred HHHHHHHHHHHHHcCCCEEEecCCCccccccCHHHHHHHHHHHHHHHHHHHhcCCcEEEECCC------ChhHHHHHHHc
Confidence 5667888888889999999888876432212466655 56688888875 5777776421 13456666654
Q ss_pred C-CEEEEEeC-CHHHHHHHHhhcCCCCEEEEeCCcch
Q psy11975 601 E-NIRGVKDT-DNIKLANMANQTKDLNFSVFAGSAGY 635 (786)
Q Consensus 601 P-NVVGIKDS-Dl~ri~~ll~~~~~~df~Vf~G~Del 635 (786)
+ ++..+=.. |+....+. .++++.++.+.|..
T Consensus 244 g~d~~~~d~~~dl~e~~~~----~g~~~~i~Gnidp~ 276 (326)
T cd03307 244 GFDGISVDEKVDVKTAKEI----VGGRAALIGNVSPS 276 (326)
T ss_pred CCCeecccccCCHHHHHHH----cCCceEEEeCCChH
Confidence 3 55555444 77766544 34566666666654
No 142
>TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2. The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region.
Probab=76.25 E-value=29 Score=38.79 Aligned_cols=69 Identities=9% Similarity=0.027 Sum_probs=47.6
Q ss_pred CCeEEEeCCCC-------CHHHHHHHHHHHHHcCCCEEEE--cCCCCCC--CCCCHHHHHHHHHHHHhcCC-------CC
Q psy11975 514 QADLLKPQKHT-------TTRATIDLTQKAAKAGANAALI--LCPYYFQ--KKMTEDLIYEHFISVADNSP-------IP 575 (786)
Q Consensus 514 RVPVIaGVGa~-------ST~EAIELAr~Ae~aGADAVmV--iPPyY~k--ps~S~eeLv~YFraIAeAtd-------LP 575 (786)
++||++.++.+ +.+|-++.++.+.+ .||++-+ ..|..-. .....+.+.+..+.|-++++ +|
T Consensus 134 ~~~i~vsi~~~~~~~~~~~~~dy~~~~~~~~~-~ad~iElNlScPn~~~~~~~~~~~~~~~i~~~V~~~~~~~~~~~~~P 212 (335)
T TIGR01036 134 KGPIGINIGKNKDTPSEDAKEDYAACLRKLGP-LADYLVVNVSSPNTPGLRDLQYKAELRDLLTAVKQEQDGLRRVHRVP 212 (335)
T ss_pred CCcEEEEEeCCCCCCcccCHHHHHHHHHHHhh-hCCEEEEEccCCCCCCcccccCHHHHHHHHHHHHHHHHhhhhccCCc
Confidence 46788888766 56777777777766 4999987 5554311 11246777888888877765 89
Q ss_pred EEEEeCCC
Q psy11975 576 VIIYNNTF 583 (786)
Q Consensus 576 IiLYNiP~ 583 (786)
|++==-|.
T Consensus 213 v~vKLsP~ 220 (335)
T TIGR01036 213 VLVKIAPD 220 (335)
T ss_pred eEEEeCCC
Confidence 99876664
No 143
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=76.13 E-value=12 Score=40.40 Aligned_cols=34 Identities=12% Similarity=0.281 Sum_probs=28.7
Q ss_pred CCeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEcC
Q psy11975 514 QADLLKPQKHTTTRATIDLTQKAAKAGANAALILC 548 (786)
Q Consensus 514 RVPVIaGVGa~ST~EAIELAr~Ae~aGADAVmViP 548 (786)
++||++-++. +..+.+++++.++++|+|++.++.
T Consensus 157 ~~pv~vKl~~-~~~~~~~~a~~l~~~G~d~i~~~n 190 (301)
T PRK07259 157 KVPVIVKLTP-NVTDIVEIAKAAEEAGADGLSLIN 190 (301)
T ss_pred CCCEEEEcCC-CchhHHHHHHHHHHcCCCEEEEEc
Confidence 5799987764 556999999999999999998864
No 144
>COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism]
Probab=76.06 E-value=4.4 Score=43.82 Aligned_cols=64 Identities=20% Similarity=0.368 Sum_probs=49.9
Q ss_pred CCCCeEEEeCCCCC--------HHHHHHHHHHHHHcCCCEEEEcC-CCCCCCCCCHHHHHHHHHHHHhcCCCCEEEEeC
Q psy11975 512 EWQADLLKPQKHTT--------TRATIDLTQKAAKAGANAALILC-PYYFQKKMTEDLIYEHFISVADNSPIPVIIYNN 581 (786)
Q Consensus 512 aGRVPVIaGVGa~S--------T~EAIELAr~Ae~aGADAVmViP-PyY~kps~S~eeLv~YFraIAeAtdLPIiLYNi 581 (786)
.++..||+=+--.| -.+-.+.|+..++.||+++.++. |.||..+ ++|.+.+.+++++||+.=|+
T Consensus 43 ~~~~~vIAEvKkaSPS~G~ir~d~dp~~ia~~Ye~~GAa~iSVLTd~~~F~Gs------~e~L~~v~~~v~~PvL~KDF 115 (254)
T COG0134 43 SGKPAVIAEVKKASPSKGLIREDFDPVEIAKAYEEGGAAAISVLTDPKYFQGS------FEDLRAVRAAVDLPVLRKDF 115 (254)
T ss_pred CCCceEEEEeecCCCCCCcccccCCHHHHHHHHHHhCCeEEEEecCccccCCC------HHHHHHHHHhcCCCeeeccC
Confidence 35677777443222 23456799999999999999988 8898876 67889999999999998876
No 145
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=75.89 E-value=40 Score=37.94 Aligned_cols=65 Identities=12% Similarity=0.216 Sum_probs=45.3
Q ss_pred CCCCeEEEeCCC-CCHHHHHHHHHHHHHcCCCEEEE------cCCCCCCCCCCHHHHHHHHHHHHhcCCCCEEE
Q psy11975 512 EWQADLLKPQKH-TTTRATIDLTQKAAKAGANAALI------LCPYYFQKKMTEDLIYEHFISVADNSPIPVII 578 (786)
Q Consensus 512 aGRVPVIaGVGa-~ST~EAIELAr~Ae~aGADAVmV------iPPyY~kps~S~eeLv~YFraIAeAtdLPIiL 578 (786)
++++.+|+|-.. .+.+.+++.|+..+++|++.+-. ..||-|+.- .++-++++.++++.+++|++-
T Consensus 91 ~~~~~~IAGPCsiEs~e~~~~~A~~lk~~ga~~~r~~~fKpRTsp~sf~G~--g~~gL~~L~~~~~~~Gl~v~t 162 (335)
T PRK08673 91 GGKPVVIAGPCSVESEEQILEIARAVKEAGAQILRGGAFKPRTSPYSFQGL--GEEGLKLLAEAREETGLPIVT 162 (335)
T ss_pred CCceEEEEecCccCCHHHHHHHHHHHHHhchhhccCcEecCCCCCcccccc--cHHHHHHHHHHHHHcCCcEEE
Confidence 457788888554 58888999999999999983221 123333321 244456888889999999985
No 146
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=75.34 E-value=47 Score=35.23 Aligned_cols=64 Identities=16% Similarity=0.261 Sum_probs=45.9
Q ss_pred EEeCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCC-----------------HHHHHHHHHHHHhcCCCCEEE--
Q psy11975 518 LKPQKHTTTRATIDLTQKAAKAGANAALILCPYYFQKKMT-----------------EDLIYEHFISVADNSPIPVII-- 578 (786)
Q Consensus 518 IaGVGa~ST~EAIELAr~Ae~aGADAVmViPPyY~kps~S-----------------~eeLv~YFraIAeAtdLPIiL-- 578 (786)
.+-+|..+.+..++.++..+++|||++=+--|+-. |-++ .+...+..++|.+.+++|+++
T Consensus 5 y~~~G~P~~~~~~~~~~~l~~~Gad~iel~iPfsd-Pv~DG~~I~~a~~~al~~g~~~~~~~~~~~~vr~~~~~pv~lm~ 83 (242)
T cd04724 5 YITAGDPDLETTLEILKALVEAGADIIELGIPFSD-PVADGPVIQAASERALANGVTLKDVLELVKEIRKKNTIPIVLMG 83 (242)
T ss_pred EEeCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCC-CCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhcCCCCEEEEE
Confidence 45677889999999999999999999999987632 2111 124455666666666788776
Q ss_pred EeCC
Q psy11975 579 YNNT 582 (786)
Q Consensus 579 YNiP 582 (786)
|-+|
T Consensus 84 y~n~ 87 (242)
T cd04724 84 YYNP 87 (242)
T ss_pred ecCH
Confidence 7445
No 147
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=74.98 E-value=17 Score=40.06 Aligned_cols=83 Identities=8% Similarity=0.019 Sum_probs=55.5
Q ss_pred cCCCCeEEEeC-------CCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCC---CCCHHHHHHHHHHHHhcCCCCEEEEe
Q psy11975 511 REWQADLLKPQ-------KHTTTRATIDLTQKAAKAGANAALILCPYYFQK---KMTEDLIYEHFISVADNSPIPVIIYN 580 (786)
Q Consensus 511 vaGRVPVIaGV-------Ga~ST~EAIELAr~Ae~aGADAVmViPPyY~kp---s~S~eeLv~YFraIAeAtdLPIiLYN 580 (786)
++.+++|.+=+ ++.+.++++++++..++.|+|.+-+....+... .........+++.|.+.+++||+.
T Consensus 218 vG~d~~v~vri~~~~~~~~g~~~~e~~~ia~~Le~~gvd~iev~~g~~~~~~~~~~~~~~~~~~~~~ir~~~~iPVi~-- 295 (336)
T cd02932 218 WPEDKPLFVRISATDWVEGGWDLEDSVELAKALKELGVDLIDVSSGGNSPAQKIPVGPGYQVPFAERIRQEAGIPVIA-- 295 (336)
T ss_pred cCCCceEEEEEcccccCCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCcccccCCCccccHHHHHHHHhhCCCCEEE--
Confidence 44456666532 345789999999999999999998764322111 000122357778888888999875
Q ss_pred CCCCcCCccCHHHHHHHHh
Q psy11975 581 NTFVTNIDISVDTLVKLAH 599 (786)
Q Consensus 581 iP~~TGv~LSpelL~rLAe 599 (786)
.|.-.+++...++.+
T Consensus 296 ----~G~i~t~~~a~~~l~ 310 (336)
T cd02932 296 ----VGLITDPEQAEAILE 310 (336)
T ss_pred ----eCCCCCHHHHHHHHH
Confidence 344567888888874
No 148
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=74.93 E-value=9.7 Score=43.04 Aligned_cols=157 Identities=14% Similarity=0.185 Sum_probs=98.4
Q ss_pred ceeeecCCCCCCCHHHHHHHHHhCCCCCccCCCccccccCCCCCCCCCCCCCccccCCCCeEEEeCCCCCHHHHHHHHHH
Q psy11975 456 SHYFKAHSSTSMPIQKRKSLLRKFPLWPELEPSTSELKRSDRPMSVGPRSVRPSEREWQADLLKPQKHTTTRATIDLTQK 535 (786)
Q Consensus 456 ~Gvf~agE~~sLT~dER~~Lle~~~~wve~~a~~~e~~~~~~~~~~~~r~v~veevaGRVPVIaGVGa~ST~EAIELAr~ 535 (786)
.||++ ..++.+|+.+.++. |....+ ... ....+++.|-+.|+.. ++..++++.
T Consensus 63 lgvih----~~~~~e~q~~~v~~---vK~~~~----------------~a~--~d~~~~l~V~aavg~~--~~~~er~~~ 115 (352)
T PF00478_consen 63 LGVIH----RNMSIEEQAEEVKK---VKRYYP----------------NAS--KDEKGRLLVAAAVGTR--DDDFERAEA 115 (352)
T ss_dssp EEEEE----SSSCHHHHHHHHHH---HHTHHT----------------THH--BHTTSCBCEEEEEESS--TCHHHHHHH
T ss_pred Cceec----CCCCHHHHHHHHhh---hccccc----------------ccc--ccccccceEEEEecCC--HHHHHHHHH
Confidence 37777 56899999998887 433211 000 1234566676666553 456888888
Q ss_pred HHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHhcCC-CCEEEEeCCCCcCCccCHHHHHHHHhCCCEEEEEeC-----
Q psy11975 536 AAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSP-IPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKDT----- 609 (786)
Q Consensus 536 Ae~aGADAVmViPPyY~kps~S~eeLv~YFraIAeAtd-LPIiLYNiP~~TGv~LSpelL~rLAeiPNVVGIKDS----- 609 (786)
..++|+|.+++-...-. .+.+++..+.|-+..+ +|||.=|+ .+.+....|.+.. +-+||-.
T Consensus 116 L~~agvD~ivID~a~g~-----s~~~~~~ik~ik~~~~~~~viaGNV-------~T~e~a~~L~~aG-ad~vkVGiGpGs 182 (352)
T PF00478_consen 116 LVEAGVDVIVIDSAHGH-----SEHVIDMIKKIKKKFPDVPVIAGNV-------VTYEGAKDLIDAG-ADAVKVGIGPGS 182 (352)
T ss_dssp HHHTT-SEEEEE-SSTT-----SHHHHHHHHHHHHHSTTSEEEEEEE--------SHHHHHHHHHTT--SEEEESSSSST
T ss_pred HHHcCCCEEEccccCcc-----HHHHHHHHHHHHHhCCCceEEeccc-------CCHHHHHHHHHcC-CCEEEEeccCCc
Confidence 89999999998765532 4567788888887775 89988774 5688889998753 7788877
Q ss_pred -C------------HHHHHHHHhhcCCCCEEEEe-CC---cchhhhhhccCCcccccccc
Q psy11975 610 -D------------NIKLANMANQTKDLNFSVFA-GS---AGYLLSGLLVGCAGGINALS 652 (786)
Q Consensus 610 -D------------l~ri~~ll~~~~~~df~Vf~-G~---DelLL~aL~~GAdG~Isg~a 652 (786)
. +..+.++.+....-++.|+. |. .+.+.-+|.+|++.+|.|..
T Consensus 183 iCtTr~v~GvG~PQ~tAv~~~a~~a~~~~v~iIADGGi~~sGDi~KAla~GAd~VMlG~l 242 (352)
T PF00478_consen 183 ICTTREVTGVGVPQLTAVYECAEAARDYGVPIIADGGIRTSGDIVKALAAGADAVMLGSL 242 (352)
T ss_dssp TBHHHHHHSBSCTHHHHHHHHHHHHHCTTSEEEEESS-SSHHHHHHHHHTT-SEEEESTT
T ss_pred ccccccccccCCcHHHHHHHHHHHhhhccCceeecCCcCcccceeeeeeecccceeechh
Confidence 1 12222332222222455543 32 13467789999999998853
No 149
>TIGR02321 Pphn_pyruv_hyd phosphonopyruvate hydrolase. This family consists of phosphonopyruvate hydrolase, an enzyme closely related to phosphoenolpyruvate phosphomutase. It cleaves the direct C-P bond of phosphonopyruvate. The characterized example is from Variovorax sp. Pal2.
Probab=74.80 E-value=61 Score=35.78 Aligned_cols=146 Identities=12% Similarity=0.020 Sum_probs=82.0
Q ss_pred CCeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEcCCC----CCCCC---CCHHHHHHHHHHHHhcCCCCEEEEeCCCCcC
Q psy11975 514 QADLLKPQKHTTTRATIDLTQKAAKAGANAALILCPY----YFQKK---MTEDLIYEHFISVADNSPIPVIIYNNTFVTN 586 (786)
Q Consensus 514 RVPVIaGVGa~ST~EAIELAr~Ae~aGADAVmViPPy----Y~kps---~S~eeLv~YFraIAeAtdLPIiLYNiP~~TG 586 (786)
++-+..||... =-|+.++++|++++.+..=- +..|+ ++.+++++..++|++++++||++ |+-.-.|
T Consensus 15 ~~~~~pg~~D~------lSAri~e~aGf~ai~~ss~~va~slG~pD~g~l~~~e~~~~~~~I~~~~~lPv~a-D~d~GyG 87 (290)
T TIGR02321 15 RLFTAMAAHNP------LVAKLAEQAGFGGIWGSGFELSASYAVPDANILSMSTHLEMMRAIASTVSIPLIA-DIDTGFG 87 (290)
T ss_pred CCEEeccccCH------HHHHHHHHcCCCEEEECHHHHHHHCCCCCcccCCHHHHHHHHHHHHhccCCCEEE-ECCCCCC
Confidence 33455566652 23577788899999877521 12232 47899999999999999999665 5532233
Q ss_pred CccCH-HHHHHHHhCCCEEEEEeC-------------------CH----HHHHHHHhhcCCCCEEEEeCCcchh------
Q psy11975 587 IDISV-DTLVKLAHHENIRGVKDT-------------------DN----IKLANMANQTKDLNFSVFAGSAGYL------ 636 (786)
Q Consensus 587 v~LSp-elL~rLAeiPNVVGIKDS-------------------Dl----~ri~~ll~~~~~~df~Vf~G~DelL------ 636 (786)
..+.. .++.++.+ -.++||=.+ +. .+++..++...+++|.|..=.|.++
T Consensus 88 ~~~~v~~tV~~~~~-aGvagi~IEDq~~pk~cg~~~~g~~~l~~~ee~~~kI~Aa~~a~~~~d~~I~ARTDa~~~~~g~d 166 (290)
T TIGR02321 88 NAVNVHYVVPQYEA-AGASAIVMEDKTFPKDTSLRTDGRQELVRIEEFQGKIAAATAARADRDFVVIARVEALIAGLGQQ 166 (290)
T ss_pred CcHHHHHHHHHHHH-cCCeEEEEeCCCCCcccccccCCCccccCHHHHHHHHHHHHHhCCCCCEEEEEEeccccccCCHH
Confidence 33322 22444432 234443332 22 3333343323345666544334432
Q ss_pred ------hhhhccCCccccccccccccHHHHHHHHHHH
Q psy11975 637 ------LSGLLVGCAGGINALSAVLGGPICELYDLAK 667 (786)
Q Consensus 637 ------L~aL~~GAdG~Isg~aN~~Pel~vaL~eA~~ 667 (786)
-....+|+|++..-....-++.+.++.+++.
T Consensus 167 eAI~Ra~aY~eAGAD~ifv~~~~~~~~ei~~~~~~~~ 203 (290)
T TIGR02321 167 EAVRRGQAYEEAGADAILIHSRQKTPDEILAFVKSWP 203 (290)
T ss_pred HHHHHHHHHHHcCCCEEEecCCCCCHHHHHHHHHhcC
Confidence 1234589998866432345677777777663
No 150
>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain. Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.
Probab=74.78 E-value=1.1e+02 Score=33.89 Aligned_cols=83 Identities=17% Similarity=0.101 Sum_probs=51.7
Q ss_pred CCCeEEEeCCCCCHH--HHHHHHHHHHHcCCCEEEEcCCCC---CCCC--CCHHHHHHHHHHHHhcCCCCEEEEeCCCCc
Q psy11975 513 WQADLLKPQKHTTTR--ATIDLTQKAAKAGANAALILCPYY---FQKK--MTEDLIYEHFISVADNSPIPVIIYNNTFVT 585 (786)
Q Consensus 513 GRVPVIaGVGa~ST~--EAIELAr~Ae~aGADAVmViPPyY---~kps--~S~eeLv~YFraIAeAtdLPIiLYNiP~~T 585 (786)
...|+++.++..... +.-+..+..+.++|||+-+--... ..+. .+.+.+++..+.|.+.+++||++=-.
T Consensus 111 ~~~p~~~Nl~~~~~~~~~~~~~~~~i~~~~adalel~l~~~q~~~~~~~~~df~~~~~~i~~l~~~~~vPVivK~~---- 186 (326)
T cd02811 111 PNGPLIANLGAVQLNGYGVEEARRAVEMIEADALAIHLNPLQEAVQPEGDRDFRGWLERIEELVKALSVPVIVKEV---- 186 (326)
T ss_pred CCceEEeecCccccCCCCHHHHHHHHHhcCCCcEEEeCcchHhhcCCCCCcCHHHHHHHHHHHHHhcCCCEEEEec----
Confidence 357899988876421 233334444556788887643210 0111 12445668888898888999998753
Q ss_pred CCccCHHHHHHHHh
Q psy11975 586 NIDISVDTLVKLAH 599 (786)
Q Consensus 586 Gv~LSpelL~rLAe 599 (786)
|..++.+...+|.+
T Consensus 187 g~g~s~~~a~~l~~ 200 (326)
T cd02811 187 GFGISRETAKRLAD 200 (326)
T ss_pred CCCCCHHHHHHHHH
Confidence 33577888888864
No 151
>PRK00115 hemE uroporphyrinogen decarboxylase; Validated
Probab=74.53 E-value=74 Score=35.30 Aligned_cols=130 Identities=18% Similarity=0.108 Sum_probs=76.3
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHH----HHHHHHHhcC-----CCCEEEEeCCCCcCCccCHHHHH
Q psy11975 525 TTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIY----EHFISVADNS-----PIPVIIYNNTFVTNIDISVDTLV 595 (786)
Q Consensus 525 ST~EAIELAr~Ae~aGADAVmViPPyY~kps~S~eeLv----~YFraIAeAt-----dLPIiLYNiP~~TGv~LSpelL~ 595 (786)
.++..+++++...++|||++++.-|.... ++.+... -|.++|.++. +.|++ |.+- .+ ...+.
T Consensus 184 ~t~~~~~~~~~~~eaGad~i~i~d~~~~~--lsp~~f~ef~~P~~k~i~~~i~~~~~~~~il-h~cg-~~-----~~~~~ 254 (346)
T PRK00115 184 LADATIAYLNAQIEAGAQAVQIFDSWAGA--LSPADYREFVLPYMKRIVAELKREHPDVPVI-LFGK-GA-----GELLE 254 (346)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEecCcccc--CCHHHHHHHHHHHHHHHHHHHHHhCCCCCEE-EEcC-Cc-----HHHHH
Confidence 46778888998889999999988874332 3466654 4557888776 23344 3332 22 23466
Q ss_pred HHHhC-CCEEEEEeC-CHHHHHHHHhhcCCCCEEEEeCCcchhh------------hhhc-cCCcccccccccccc----
Q psy11975 596 KLAHH-ENIRGVKDT-DNIKLANMANQTKDLNFSVFAGSAGYLL------------SGLL-VGCAGGINALSAVLG---- 656 (786)
Q Consensus 596 rLAei-PNVVGIKDS-Dl~ri~~ll~~~~~~df~Vf~G~DelLL------------~aL~-~GAdG~Isg~aN~~P---- 656 (786)
.+.+. .+++++=.. |+....+.+ +++..+..+.|..++ ..+. .+..|+|.+.++-.|
T Consensus 255 ~~~~~~~~~is~d~~~dl~~~k~~~----g~~~~i~Gni~p~ll~gt~e~i~~~~~~~i~~~~~~gfIl~~Gc~i~~~tp 330 (346)
T PRK00115 255 AMAETGADVVGLDWTVDLAEARRRV----GDKKALQGNLDPAVLLAPPEAIEEEVRAILDGGGGPGHIFNLGHGILPETP 330 (346)
T ss_pred HHHhcCCCEEeeCCCCCHHHHHHHc----CCCeEEEeCCChhHhcCCHHHHHHHHHHHHHHhCCCCeeeecCCcCCCCcC
Confidence 66664 367777666 887665553 344555555553221 1222 245677777666544
Q ss_pred -HHHHHHHHHHH
Q psy11975 657 -GPICELYDLAK 667 (786)
Q Consensus 657 -el~vaL~eA~~ 667 (786)
+-+.+++++++
T Consensus 331 ~eNi~a~v~a~~ 342 (346)
T PRK00115 331 PENVKALVEAVH 342 (346)
T ss_pred HHHHHHHHHHHH
Confidence 44555555544
No 152
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=74.03 E-value=1.6e+02 Score=33.11 Aligned_cols=126 Identities=11% Similarity=0.068 Sum_probs=73.6
Q ss_pred HHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHhcCCCCEEEEeCCCCcCCccCHHHHHHHHh----C-CCEEE
Q psy11975 531 DLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAH----H-ENIRG 605 (786)
Q Consensus 531 ELAr~Ae~aGADAVmViPPyY~kps~S~eeLv~YFraIAeAtdLPIiLYNiP~~TGv~LSpelL~rLAe----i-PNVVG 605 (786)
+-.+.|.++|+|.|-+... .+ ..+.+.++.+ .+...++-+..+-. .+ ...+++.+.++++ . +..++
T Consensus 91 ~dl~~a~~~gvd~iri~~~----~~-e~d~~~~~i~-~ak~~G~~v~~~l~--~s-~~~~~e~l~~~a~~~~~~Ga~~i~ 161 (333)
T TIGR03217 91 HDLKAAYDAGARTVRVATH----CT-EADVSEQHIG-MARELGMDTVGFLM--MS-HMTPPEKLAEQAKLMESYGADCVY 161 (333)
T ss_pred HHHHHHHHCCCCEEEEEec----cc-hHHHHHHHHH-HHHHcCCeEEEEEE--cc-cCCCHHHHHHHHHHHHhcCCCEEE
Confidence 4568888999999887652 22 1334444444 44555665554432 12 2467888877762 2 78999
Q ss_pred EEeC----CHHHHHHHHh---hcCCCCEEE-EeCCcch------hhhhhccCC---ccccc----cccccccHHHHHHHH
Q psy11975 606 VKDT----DNIKLANMAN---QTKDLNFSV-FAGSAGY------LLSGLLVGC---AGGIN----ALSAVLGGPICELYD 664 (786)
Q Consensus 606 IKDS----Dl~ri~~ll~---~~~~~df~V-f~G~Del------LL~aL~~GA---dG~Is----g~aN~~Pel~vaL~e 664 (786)
|+|| .+.++.++++ +..++++.| |-+++.+ .+.++.+|+ |+.+. +.+|.--|.++.+.+
T Consensus 162 i~DT~G~~~P~~v~~~v~~l~~~l~~~i~ig~H~HnnlGla~ANslaAi~aGa~~iD~Sl~G~G~~aGN~~~E~lv~~l~ 241 (333)
T TIGR03217 162 IVDSAGAMLPDDVRDRVRALKAVLKPETQVGFHAHHNLSLAVANSIAAIEAGATRIDASLRGLGAGAGNAPLEVFVAVLD 241 (333)
T ss_pred EccCCCCCCHHHHHHHHHHHHHhCCCCceEEEEeCCCCchHHHHHHHHHHhCCCEEEeecccccccccCccHHHHHHHHH
Confidence 9999 5555554443 223333333 6666653 245677886 34443 445666677776665
Q ss_pred H
Q psy11975 665 L 665 (786)
Q Consensus 665 A 665 (786)
.
T Consensus 242 ~ 242 (333)
T TIGR03217 242 R 242 (333)
T ss_pred h
Confidence 4
No 153
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=73.96 E-value=21 Score=40.56 Aligned_cols=127 Identities=15% Similarity=0.109 Sum_probs=71.9
Q ss_pred CeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEcC----CCCCCCCCCHHHHHHHHHHHHhcCCCCEEEEeCCCCcCCccC
Q psy11975 515 ADLLKPQKHTTTRATIDLTQKAAKAGANAALILC----PYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDIS 590 (786)
Q Consensus 515 VPVIaGVGa~ST~EAIELAr~Ae~aGADAVmViP----PyY~kps~S~eeLv~YFraIAeAtdLPIiLYNiP~~TGv~LS 590 (786)
++|.+.+ +..+..++++.+.++|+|.+.+.. -.|....-+.+.+.++ .+..++||+. |.-.+
T Consensus 132 V~v~vr~---~~~~~~e~a~~l~eaGvd~I~vhgrt~~~~h~~~~~~~~~i~~~----ik~~~ipVIa-------G~V~t 197 (368)
T PRK08649 132 VIVAVSL---SPQRAQELAPTVVEAGVDLFVIQGTVVSAEHVSKEGEPLNLKEF----IYELDVPVIV-------GGCVT 197 (368)
T ss_pred EEEEEec---CCcCHHHHHHHHHHCCCCEEEEeccchhhhccCCcCCHHHHHHH----HHHCCCCEEE-------eCCCC
Confidence 5665655 336788999999999999999953 2332211014444443 3345899876 23456
Q ss_pred HHHHHHHHhCCCEEEEEeC---------------CHHHHHHHHhh----------cCCCCEEEEeCCc----chhhhhhc
Q psy11975 591 VDTLVKLAHHENIRGVKDT---------------DNIKLANMANQ----------TKDLNFSVFAGSA----GYLLSGLL 641 (786)
Q Consensus 591 pelL~rLAeiPNVVGIKDS---------------Dl~ri~~ll~~----------~~~~df~Vf~G~D----elLL~aL~ 641 (786)
.+...++.+ -.+-+||.. .+..+..+.+. ..+.++.|+.... ..+..+|+
T Consensus 198 ~e~A~~l~~-aGAD~V~VG~G~Gs~~~t~~~~g~g~p~~~ai~~~~~a~~~~l~~~~~~~vpVIAdGGI~~~~diakAla 276 (368)
T PRK08649 198 YTTALHLMR-TGAAGVLVGIGPGAACTSRGVLGIGVPMATAIADVAAARRDYLDETGGRYVHVIADGGIGTSGDIAKAIA 276 (368)
T ss_pred HHHHHHHHH-cCCCEEEECCCCCcCCCCcccCCCCcCHHHHHHHHHHHHHHhhhhhcCCCCeEEEeCCCCCHHHHHHHHH
Confidence 777777764 233333332 12333222210 0112355554322 34778899
Q ss_pred cCCcccccccccccc
Q psy11975 642 VGCAGGINALSAVLG 656 (786)
Q Consensus 642 ~GAdG~Isg~aN~~P 656 (786)
+||++++.|..-..+
T Consensus 277 lGAd~Vm~Gs~fa~t 291 (368)
T PRK08649 277 CGADAVMLGSPLARA 291 (368)
T ss_pred cCCCeecccchhccc
Confidence 999999999764433
No 154
>cd00465 URO-D_CIMS_like The URO-D_CIMS_like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases, as well as cobalamine (B12) independent methionine synthases. Despite their sequence similarities, members of this family have clearly different functions. Uroporphyrinogen decarboxylase (URO-D) decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, an important branching point of the tetrapyrrole biosynthetic pathway. The methyltransferases represented here are important for ability of methanogenic organisms to use other compounds than carbon dioxide for reduction to methane, and methionine synthases transfer a methyl group from a folate cofactor to L-homocysteine in a reaction requiring zinc.
Probab=73.20 E-value=61 Score=34.67 Aligned_cols=102 Identities=15% Similarity=0.148 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHHHcCCCEEEEcCCCCCCCC--CCHHH----HHHHHHHHHhcC---CCCEEEEeCCCCcCCccCHHHHHH
Q psy11975 526 TRATIDLTQKAAKAGANAALILCPYYFQKK--MTEDL----IYEHFISVADNS---PIPVIIYNNTFVTNIDISVDTLVK 596 (786)
Q Consensus 526 T~EAIELAr~Ae~aGADAVmViPPyY~kps--~S~ee----Lv~YFraIAeAt---dLPIiLYNiP~~TGv~LSpelL~r 596 (786)
++..+++++...++|||++.+.-|...... ++++. +..|+++|+++. +.+++++.+-. . ...+..
T Consensus 143 ~~~~~~~~~~~~eaG~d~i~i~dp~~~~~~~~is~~~~~e~~~p~~k~i~~~i~~~~~~~~lH~cg~----~--~~~~~~ 216 (306)
T cd00465 143 TEFILEYAKTLIEAGAKALQIHEPAFSQINSFLGPKMFKKFALPAYKKVAEYKAAGEVPIVHHSCYD----A--ADLLEE 216 (306)
T ss_pred HHHHHHHHHHHHHhCCCEEEEecccccccCCCCCHHHHHHHHHHHHHHHHHHHhhcCCceEEEECCC----H--HHHHHH
Confidence 678889999999999999999988654320 12333 457778888754 57888877642 2 456777
Q ss_pred HHhCC-CEEEEEeCCHHHHHHHHhhcCCCCEEEEeCCcch
Q psy11975 597 LAHHE-NIRGVKDTDNIKLANMANQTKDLNFSVFAGSAGY 635 (786)
Q Consensus 597 LAeiP-NVVGIKDSDl~ri~~ll~~~~~~df~Vf~G~Del 635 (786)
|++.+ ++..+=... .....+.+ ..+.+..+..|.+..
T Consensus 217 l~~~~~d~~~~d~~~-~d~~~~~~-~~~~~~~i~Ggv~~~ 254 (306)
T cd00465 217 MIQLGVDVISFDMTV-NEPKEAIE-KVGEKKTLVGGVDPG 254 (306)
T ss_pred HHHhCcceEeccccc-CCHHHHHH-HhCCCEEEECCCCcc
Confidence 77653 444432221 12223333 234456666666553
No 155
>COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism]
Probab=73.06 E-value=10 Score=41.85 Aligned_cols=61 Identities=23% Similarity=0.212 Sum_probs=38.8
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHhcCC--CCEEEEeCCCCcCCccCHHHHHHH
Q psy11975 525 TTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSP--IPVIIYNNTFVTNIDISVDTLVKL 597 (786)
Q Consensus 525 ST~EAIELAr~Ae~aGADAVmViPPyY~kps~S~eeLv~YFraIAeAtd--LPIiLYNiP~~TGv~LSpelL~rL 597 (786)
.++++|+.++..+++|||+|..-. .. +.++ |++++++++ +|+-+=-++. | -.++.+.|.+|
T Consensus 164 ~ld~AI~Ra~AY~eAGAD~if~~a-----l~-~~e~----i~~f~~av~~pl~~N~t~~g~-t-p~~~~~~L~~~ 226 (289)
T COG2513 164 GLDDAIERAQAYVEAGADAIFPEA-----LT-DLEE----IRAFAEAVPVPLPANITEFGK-T-PLLTVAELAEL 226 (289)
T ss_pred cHHHHHHHHHHHHHcCCcEEcccc-----CC-CHHH----HHHHHHhcCCCeeeEeeccCC-C-CCcCHHHHHhc
Confidence 399999999999999999875432 11 2444 445555554 6665555543 2 24566666555
No 156
>PF11717 Tudor-knot: RNA binding activity-knot of a chromodomain ; PDB: 2EKO_A 2RO0_A 2RNZ_A 1WGS_A 3E9G_A 3E9F_A 2K3X_A 2K3Y_A 2EFI_A 2F5K_F ....
Probab=72.99 E-value=1.6 Score=36.23 Aligned_cols=52 Identities=13% Similarity=0.173 Sum_probs=38.8
Q ss_pred CCCCceEEEecccCCCCCccccCCCCCC--CcEEEEEeCCCCCccccccccccc
Q psy11975 357 LAEGDLVWGSVKGYPSWPGKLISPAPTQ--GRVWVKWFGMSNEPLSEVEPATLK 408 (786)
Q Consensus 357 f~vGDLVWaKvkG~PwWPg~V~~~~~~~--g~~~V~fFG~~~~a~s~V~~k~Lk 408 (786)
|.+|+.||++-+.--|-+|+|++..... -.|.|.|.|-+.+---||+.++|.
T Consensus 1 ~~vG~~v~~~~~~~~~y~A~I~~~r~~~~~~~YyVHY~g~nkR~DeWV~~~~i~ 54 (55)
T PF11717_consen 1 FEVGEKVLCKYKDGQWYEAKILDIREKNGEPEYYVHYQGWNKRLDEWVPESRIR 54 (55)
T ss_dssp --TTEEEEEEETTTEEEEEEEEEEEECTTCEEEEEEETTSTGCC-EEEETTTEE
T ss_pred CCcCCEEEEEECCCcEEEEEEEEEEecCCCEEEEEEcCCCCCCceeeecHHHcc
Confidence 6899999999977789999999976543 368999999986544556666653
No 157
>COG4981 Enoyl reductase domain of yeast-type FAS1 [Lipid metabolism]
Probab=72.88 E-value=11 Score=44.91 Aligned_cols=94 Identities=16% Similarity=0.134 Sum_probs=66.1
Q ss_pred EEEeCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHhcC-CCCEEEEeCCCCcCCccCHHHHH
Q psy11975 517 LLKPQKHTTTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNS-PIPVIIYNNTFVTNIDISVDTLV 595 (786)
Q Consensus 517 VIaGVGa~ST~EAIELAr~Ae~aGADAVmViPPyY~kps~S~eeLv~YFraIAeAt-dLPIiLYNiP~~TGv~LSpelL~ 595 (786)
|+++.|=.+.++|.||....-+.|...+. |||+ +-|+|.. .-.||.+. ..||+++---++.|-.=|-+.+.
T Consensus 127 vvIsAGIP~le~A~ElI~~L~~~G~~yv~------fKPG-tIeqI~s-vi~IAka~P~~pIilq~egGraGGHHSweDld 198 (717)
T COG4981 127 VVISAGIPSLEEAVELIEELGDDGFPYVA------FKPG-TIEQIRS-VIRIAKANPTFPIILQWEGGRAGGHHSWEDLD 198 (717)
T ss_pred EEEecCCCcHHHHHHHHHHHhhcCceeEE------ecCC-cHHHHHH-HHHHHhcCCCCceEEEEecCccCCccchhhcc
Confidence 67788888999999999887777776654 4676 5666544 45588888 59999999888877665555433
Q ss_pred --------HHHhCCCEEEEEeC---CHHHHHHHH
Q psy11975 596 --------KLAHHENIRGVKDT---DNIKLANMA 618 (786)
Q Consensus 596 --------rLAeiPNVVGIKDS---Dl~ri~~ll 618 (786)
+|-.++||+-+--+ ..++...++
T Consensus 199 ~llL~tYs~lR~~~NIvl~vGgGiGtp~~aa~YL 232 (717)
T COG4981 199 DLLLATYSELRSRDNIVLCVGGGIGTPDDAAPYL 232 (717)
T ss_pred cHHHHHHHHHhcCCCEEEEecCCcCChhhccccc
Confidence 33357888877666 444444433
No 158
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=72.60 E-value=45 Score=35.18 Aligned_cols=112 Identities=13% Similarity=0.051 Sum_probs=70.0
Q ss_pred eEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHhcCCCCEEEEeCCCCcCCccCHHHHH
Q psy11975 516 DLLKPQKHTTTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLV 595 (786)
Q Consensus 516 PVIaGVGa~ST~EAIELAr~Ae~aGADAVmViPPyY~kps~S~eeLv~YFraIAeAtdLPIiLYNiP~~TGv~LSpelL~ 595 (786)
-|.+++=++ .+..+..+...++|+.+.+++.|.. | .+. ++.+.+.++.=+++=-.|+..|..+-+..+.
T Consensus 84 ~i~~H~Ea~--~~~~~~l~~ik~~g~k~GlalnP~T--p---~~~----i~~~l~~~D~vlvMtV~PGfgGq~fi~~~le 152 (220)
T PRK08883 84 MITFHVEAS--EHVDRTLQLIKEHGCQAGVVLNPAT--P---LHH----LEYIMDKVDLILLMSVNPGFGGQSFIPHTLD 152 (220)
T ss_pred EEEEcccCc--ccHHHHHHHHHHcCCcEEEEeCCCC--C---HHH----HHHHHHhCCeEEEEEecCCCCCceecHhHHH
Confidence 355666643 4556677778888999999998862 1 222 2333445554455556788888777777777
Q ss_pred HHHhCCCEEEEEeCCHHHHHHHHhhcCCCC--EEEEeCCcc-hhhhhhccCCccccccccc
Q psy11975 596 KLAHHENIRGVKDTDNIKLANMANQTKDLN--FSVFAGSAG-YLLSGLLVGCAGGINALSA 653 (786)
Q Consensus 596 rLAeiPNVVGIKDSDl~ri~~ll~~~~~~d--f~Vf~G~De-lLL~aL~~GAdG~Isg~aN 653 (786)
++ .++.+++.+ .+.+ +.+-.|-.. .+.....+|+++++.|.+-
T Consensus 153 kI--------------~~l~~~~~~-~~~~~~I~vdGGI~~eni~~l~~aGAd~vVvGSaI 198 (220)
T PRK08883 153 KL--------------RAVRKMIDE-SGRDIRLEIDGGVKVDNIREIAEAGADMFVAGSAI 198 (220)
T ss_pred HH--------------HHHHHHHHh-cCCCeeEEEECCCCHHHHHHHHHcCCCEEEEeHHH
Confidence 66 344444431 2223 444444543 4667778999999999763
No 159
>COG5475 Uncharacterized small protein [Function unknown]
Probab=72.30 E-value=6.4 Score=33.55 Aligned_cols=54 Identities=19% Similarity=0.246 Sum_probs=42.5
Q ss_pred CCCCCCceEEEecccCCCCCccccCCCCCCCcEEEEEeCCCCCccccccccccccccc
Q psy11975 355 LGLAEGDLVWGSVKGYPSWPGKLISPAPTQGRVWVKWFGMSNEPLSEVEPATLKSLSQ 412 (786)
Q Consensus 355 ~~f~vGDLVWaKvkG~PwWPg~V~~~~~~~g~~~V~fFG~~~~a~s~V~~k~LkpFsE 412 (786)
..|..||.|--|-.| |.|+++.-...|.|..+||.-..-...-..++.|+|+.+
T Consensus 3 ~~FstgdvV~lKsGG----P~Mtvs~~ss~Gmy~C~Wf~g~g~~~~~F~ed~Lvp~~a 56 (60)
T COG5475 3 MSFSTGDVVTLKSGG----PRMTVSGYSSDGMYECRWFDGYGVKREAFHEDELVPGEA 56 (60)
T ss_pred ceeecCcEEEeecCC----ceEEEeccccCCeEEEEEecCCCcccccccccceecccc
Confidence 369999999999888 899999887779999999965533344457788888644
No 160
>cd01295 AdeC Adenine deaminase (AdeC) directly deaminates adenine to form hypoxanthine. This reaction is part of one of the adenine salvage pathways, as well as the degradation pathway. It is important for adenine utilization as a purine, as well as a nitrogen source in bacteria and archea.
Probab=72.20 E-value=15 Score=41.84 Aligned_cols=76 Identities=12% Similarity=0.226 Sum_probs=51.1
Q ss_pred HHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHhcCCCCE-EEEeCCCC--------cCCccCHHHHHHHHhC
Q psy11975 530 IDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPV-IIYNNTFV--------TNIDISVDTLVKLAHH 600 (786)
Q Consensus 530 IELAr~Ae~aGADAVmViPPyY~kps~S~eeLv~YFraIAeAtdLPI-iLYNiP~~--------TGv~LSpelL~rLAei 600 (786)
.++++.|...|+..++..| .-.......+. ++++.+.++.. |+ +++..|.. .|..+..+.+.++++.
T Consensus 26 ~~~~~~a~~~GvTtvv~~p-~~~~~v~g~~~-~~~~~~~a~~~--p~~~~~~~p~~vp~t~~e~~g~~~~~~~i~~l~~~ 101 (422)
T cd01295 26 SEFAKAVLPHGTTTVIADP-HEIANVAGVDG-IEFMLEDAKKT--PLDIFWMLPSCVPATPFETSGAELTAEDIKELLEH 101 (422)
T ss_pred HHHHHHHHCCCcEEEEeCC-CCCCcCCCHHH-HHHHHHHHhCC--CceEEEeCCCcCCCCCCCCCCCcCCHHHHHHHhcC
Confidence 3468899999999999864 22222112444 45555565554 54 46677752 2345678889999888
Q ss_pred CCEEEEEeC
Q psy11975 601 ENIRGVKDT 609 (786)
Q Consensus 601 PNVVGIKDS 609 (786)
|+|+|+|+.
T Consensus 102 ~~vvglgE~ 110 (422)
T cd01295 102 PEVVGLGEV 110 (422)
T ss_pred CCCcEEEEe
Confidence 999999997
No 161
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=72.05 E-value=20 Score=39.95 Aligned_cols=87 Identities=10% Similarity=-0.006 Sum_probs=58.9
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHhcCCCCEEEEeCCCCcCCccCHHHHHHHHhCCC
Q psy11975 523 HTTTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHHEN 602 (786)
Q Consensus 523 a~ST~EAIELAr~Ae~aGADAVmViPPyY~kps~S~eeLv~YFraIAeAtdLPIiLYNiP~~TGv~LSpelL~rLAeiPN 602 (786)
+.+.+|++++++.+++.|+|.+-+....+.... ..-...+.+.|.+++++||+.-. ++ .++...++.+...
T Consensus 237 ~~~~ee~~~~~~~l~~~g~d~i~vs~g~~~~~~--~~~~~~~~~~ik~~~~ipvi~~G-----~i--~~~~a~~~l~~g~ 307 (338)
T cd02933 237 SDPEATFSYLAKELNKRGLAYLHLVEPRVAGNP--EDQPPDFLDFLRKAFKGPLIAAG-----GY--DAESAEAALADGK 307 (338)
T ss_pred CCCHHHHHHHHHHHHHcCCcEEEEecCCCCCcc--cccchHHHHHHHHHcCCCEEEEC-----CC--CHHHHHHHHHcCC
Confidence 468899999999999999999999665443321 23346677778888899998742 33 3888888876443
Q ss_pred EEEEEeC-----CHHHHHHHH
Q psy11975 603 IRGVKDT-----DNIKLANMA 618 (786)
Q Consensus 603 VVGIKDS-----Dl~ri~~ll 618 (786)
+-+|=.. |.+-+.++.
T Consensus 308 ~D~V~~gR~~ladP~~~~k~~ 328 (338)
T cd02933 308 ADLVAFGRPFIANPDLVERLK 328 (338)
T ss_pred CCEEEeCHhhhhCcCHHHHHh
Confidence 3333333 555555554
No 162
>cd03308 CmuA_CmuC_like CmuA_CmuC_like: uncharacterized protein family similar to uroporphyrinogen decarboxylase (URO-D) and the methyltransferases CmuA and CmuC.
Probab=71.94 E-value=74 Score=35.97 Aligned_cols=133 Identities=13% Similarity=0.072 Sum_probs=78.2
Q ss_pred CHHHHHHHHHHHHHcCCCE-EEEcCCCCCCCCCCHHHHH----HHHHHHHhcC---CCCEEEEeCCCCcCCccCHHHHHH
Q psy11975 525 TTRATIDLTQKAAKAGANA-ALILCPYYFQKKMTEDLIY----EHFISVADNS---PIPVIIYNNTFVTNIDISVDTLVK 596 (786)
Q Consensus 525 ST~EAIELAr~Ae~aGADA-VmViPPyY~kps~S~eeLv----~YFraIAeAt---dLPIiLYNiP~~TGv~LSpelL~r 596 (786)
.++-+++.++...++|||+ |.+.-|.-...-++++... -|+++|+++. +.|++++.+ |. ....+..
T Consensus 212 ~td~~i~~~~~~ieaGa~~~i~i~~~~s~~~~lsp~~f~ef~~P~~k~i~~~i~~~g~~~ilh~c----G~--~~~~l~~ 285 (378)
T cd03308 212 VTPLMIKMGTATAPAPYPGPVFTPIPLHLPPFLRPKQFEKFYWPSFKKVVEGLAARGQRIFLFFE----GD--WERYLEY 285 (378)
T ss_pred HHHHHHHHHHHHHHhCCCCceEEEecccccCccCHHHHHHHHHHHHHHHHHHHHhcCCCEEEEcC----CC--cHHHHHH
Confidence 3556778888888999997 6555554433224566655 4557888775 467777543 22 2345777
Q ss_pred HHhCCC--EEEEEeC-CHHHHHHHHhhcCCCCEEEEeCCcch-hh------------hhhccCC--ccccccccc-ccc-
Q psy11975 597 LAHHEN--IRGVKDT-DNIKLANMANQTKDLNFSVFAGSAGY-LL------------SGLLVGC--AGGINALSA-VLG- 656 (786)
Q Consensus 597 LAeiPN--VVGIKDS-Dl~ri~~ll~~~~~~df~Vf~G~Del-LL------------~aL~~GA--dG~Isg~aN-~~P- 656 (786)
+++.+. ++++=+. |+....+.+ +++..+..+.+.. ++ ..+..++ .|+|.+.++ +.|
T Consensus 286 l~~~g~~~v~~~~~~~dl~~ak~~~----g~~~~i~GNl~p~~L~~Gt~e~i~~~v~~~l~~~~~~~gfIl~~gcgi~p~ 361 (378)
T cd03308 286 LQELPKGKTVGLFEYGDPKKVKEKL----GDKKCIAGGFPTTLLKYGTPEECIDYVKELLDTLAPGGGFIFGTDKPIISA 361 (378)
T ss_pred HHhcCCCcEEEcCCCCCHHHHHHHh----CCCEEEEcCCCCHHHhcCCHHHHHHHHHHHHHHhCCCCCEEEeCCCcCCCC
Confidence 777653 5666556 887665554 3445555555542 22 1233333 467777765 333
Q ss_pred -----HHHHHHHHHHH
Q psy11975 657 -----GPICELYDLAK 667 (786)
Q Consensus 657 -----el~vaL~eA~~ 667 (786)
+-+.+++++++
T Consensus 362 tp~~~eNi~a~v~av~ 377 (378)
T cd03308 362 DDAKPENLIAVIEFVR 377 (378)
T ss_pred CCCChHHHHHHHHHHh
Confidence 55666666654
No 163
>PRK11320 prpB 2-methylisocitrate lyase; Provisional
Probab=71.71 E-value=72 Score=35.32 Aligned_cols=129 Identities=12% Similarity=0.055 Sum_probs=73.8
Q ss_pred HHHHHHcCCCEEEEcCC-----CCCCCC---CCHHHHHHHHHHHHhcCCCCEEEEeCCCCcCCccCHHHHHHHH---hCC
Q psy11975 533 TQKAAKAGANAALILCP-----YYFQKK---MTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLA---HHE 601 (786)
Q Consensus 533 Ar~Ae~aGADAVmViPP-----yY~kps---~S~eeLv~YFraIAeAtdLPIiLYNiP~~TGv~LSpelL~rLA---eiP 601 (786)
|+.++++|++++.+..= .+..|+ ++-+++++..+.|++++++|| +-|+- +|+. ++..+.+.. .--
T Consensus 30 Ari~e~~Gf~ai~~Sg~~~a~~~lG~PD~g~l~~~e~~~~~~~I~~~~~iPv-iaD~d--~GyG-~~~~v~r~V~~~~~a 105 (292)
T PRK11320 30 ALLAERAGFKAIYLSGGGVAAASLGLPDLGITTLDDVLIDVRRITDACDLPL-LVDID--TGFG-GAFNIARTVKSMIKA 105 (292)
T ss_pred HHHHHHcCCCEEEeCHHHHHhHhcCCCCCCCCCHHHHHHHHHHHHhccCCCE-EEECC--CCCC-CHHHHHHHHHHHHHc
Confidence 57788889999976541 112233 478999999999999999996 55653 5665 555543333 123
Q ss_pred CEEEEEeC-----------------C----HHHHHHHHhhcCCCCEEEEeCCcchh-----------hhhhccCCccccc
Q psy11975 602 NIRGVKDT-----------------D----NIKLANMANQTKDLNFSVFAGSAGYL-----------LSGLLVGCAGGIN 649 (786)
Q Consensus 602 NVVGIKDS-----------------D----l~ri~~ll~~~~~~df~Vf~G~DelL-----------L~aL~~GAdG~Is 649 (786)
.++||=.+ + ..+++..++...+++|.|..=.|..+ .....+|+|++..
T Consensus 106 Gaagi~IEDq~~pK~cg~~~~~~lv~~ee~~~kI~Aa~~a~~~~d~~IiARTDa~~~~g~deAI~Ra~aY~eAGAD~ifi 185 (292)
T PRK11320 106 GAAAVHIEDQVGAKRCGHRPNKEIVSQEEMVDRIKAAVDARTDPDFVIMARTDALAVEGLDAAIERAQAYVEAGADMIFP 185 (292)
T ss_pred CCeEEEEecCCCccccCCCCCCcccCHHHHHHHHHHHHHhccCCCeEEEEecCcccccCHHHHHHHHHHHHHcCCCEEEe
Confidence 45555443 1 23444444433356676655445432 1233478887755
Q ss_pred cccccccHHHHHHHHHH
Q psy11975 650 ALSAVLGGPICELYDLA 666 (786)
Q Consensus 650 g~aN~~Pel~vaL~eA~ 666 (786)
-.. --++.+.++.+++
T Consensus 186 ~~~-~~~~~i~~~~~~~ 201 (292)
T PRK11320 186 EAM-TELEMYRRFADAV 201 (292)
T ss_pred cCC-CCHHHHHHHHHhc
Confidence 432 1244454444443
No 164
>PRK09490 metH B12-dependent methionine synthase; Provisional
Probab=71.36 E-value=90 Score=40.95 Aligned_cols=154 Identities=13% Similarity=0.025 Sum_probs=93.7
Q ss_pred CCCeEEEeCCC----------CCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHhcCCCCEEEEeCC
Q psy11975 513 WQADLLKPQKH----------TTTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNT 582 (786)
Q Consensus 513 GRVPVIaGVGa----------~ST~EAIELAr~Ae~aGADAVmViPPyY~kps~S~eeLv~YFraIAeAtdLPIiLYNiP 582 (786)
-++||++.++- .+.+.+ +...+..|+++|.+-. ..+ ++.+..+.+.+++.++.||++|-|-
T Consensus 208 ~~lPv~vS~T~~d~~Gr~lsG~~~ea~---~~~l~~~~~~avGlNC----s~G--P~~m~~~l~~l~~~~~~pi~vyPNA 278 (1229)
T PRK09490 208 VRLPVMISGTITDASGRTLSGQTTEAF---WNSLRHAKPLSIGLNC----ALG--ADELRPYVEELSRIADTYVSAHPNA 278 (1229)
T ss_pred CCCeEEEEEEEECCCCccCCCCcHHHH---HHHHhcCCCCEEEEcC----CCc--HHHHHHHHHHHHHhcCCeEEEEeCC
Confidence 36888885543 222222 2333567888777653 112 7899999999999889999999885
Q ss_pred CC----cCCccCHHHHHHHH----hCC--CEEEEEeC-CHHHHHHHHhhcC--CCC-------EEEEeCCcchhhhhhcc
Q psy11975 583 FV----TNIDISVDTLVKLA----HHE--NIRGVKDT-DNIKLANMANQTK--DLN-------FSVFAGSAGYLLSGLLV 642 (786)
Q Consensus 583 ~~----TGv~LSpelL~rLA----eiP--NVVGIKDS-Dl~ri~~ll~~~~--~~d-------f~Vf~G~DelLL~aL~~ 642 (786)
+. ..++.+|+.+.+.+ +.+ ||+|=-.. .+++++++.+... .++ ..+.+|.....+
T Consensus 279 GlP~~~~~yd~tPe~~a~~~~~~~~~G~v~IIGGCCGTtPeHI~ala~~l~~~~p~~~~~~~~~~~~S~~~~~~~----- 353 (1229)
T PRK09490 279 GLPNAFGEYDETPEEMAAQIGEFAESGFLNIVGGCCGTTPEHIAAIAEAVAGLPPRKLPEIPVACRLSGLEPLNI----- 353 (1229)
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHcCCCCEEEecCCCCHHHHHHHHHHHhcCCCCCCCCcCcceeeecceEEee-----
Confidence 42 35678888877665 345 88887777 8888877655221 111 124444443322
Q ss_pred CCc-cccccccccccHHHHHHHHHHHcCCHHHHHHHHHH
Q psy11975 643 GCA-GGINALSAVLGGPICELYDLAKAGKWEEAMKLQHR 680 (786)
Q Consensus 643 GAd-G~Isg~aN~~Pel~vaL~eA~~aGD~eeAreLQ~r 680 (786)
+.+ .++...--+.+--...+.+++++||++.|.+.-.+
T Consensus 354 ~~~~~~~~IGER~N~~G~k~~~~~i~~~d~~~al~~A~~ 392 (1229)
T PRK09490 354 DDDSLFVNVGERTNVTGSAKFARLIKEEDYDEALDVARQ 392 (1229)
T ss_pred cCCCcccccccccchhccHHHHHHHHcCCHHHHHHHHHH
Confidence 211 11111112223334778889999999888765433
No 165
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=71.27 E-value=1e+02 Score=33.32 Aligned_cols=99 Identities=13% Similarity=0.220 Sum_probs=63.4
Q ss_pred EEEeCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCC----------------CCCHHHHHHHHHHHH-hcCCCCEE--
Q psy11975 517 LLKPQKHTTTRATIDLTQKAAKAGANAALILCPYYFQK----------------KMTEDLIYEHFISVA-DNSPIPVI-- 577 (786)
Q Consensus 517 VIaGVGa~ST~EAIELAr~Ae~aGADAVmViPPyY~kp----------------s~S~eeLv~YFraIA-eAtdLPIi-- 577 (786)
..+-.|..+.+.+++.++...+.|||.+=+--||-... +++.+.+++..+++. +..++|++
T Consensus 16 ~yi~aG~P~~~~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~~AL~~G~~~~~~~~~~~~~r~~~~~~p~vlm 95 (258)
T PRK13111 16 PYITAGDPDLETSLEIIKALVEAGADIIELGIPFSDPVADGPVIQAASLRALAAGVTLADVFELVREIREKDPTIPIVLM 95 (258)
T ss_pred EEEeCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCcccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEE
Confidence 45578889999999999999999999999999984321 123445667777776 33467744
Q ss_pred EEeCCCCcCCccCHHHHHHHHhCCCEEEEEeC--CHHHHHHHH
Q psy11975 578 IYNNTFVTNIDISVDTLVKLAHHENIRGVKDT--DNIKLANMA 618 (786)
Q Consensus 578 LYNiP~~TGv~LSpelL~rLAeiPNVVGIKDS--Dl~ri~~ll 618 (786)
.|-+|-. .+..+-+.+.++--.|-|+--- .+++..+++
T Consensus 96 ~Y~N~i~---~~G~e~f~~~~~~aGvdGviipDLp~ee~~~~~ 135 (258)
T PRK13111 96 TYYNPIF---QYGVERFAADAAEAGVDGLIIPDLPPEEAEELR 135 (258)
T ss_pred ecccHHh---hcCHHHHHHHHHHcCCcEEEECCCCHHHHHHHH
Confidence 4555543 2344544444433356666666 344444443
No 166
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=70.94 E-value=1.9e+02 Score=32.71 Aligned_cols=260 Identities=15% Similarity=0.178 Sum_probs=126.7
Q ss_pred CCCCCCHHHHHHHHHhCCCCCccCCCccccc-cCCCCCCCCCCC-C-CccccCCCCeEEEeCCCCCHHHHHHHHHHHHHc
Q psy11975 463 SSTSMPIQKRKSLLRKFPLWPELEPSTSELK-RSDRPMSVGPRS-V-RPSEREWQADLLKPQKHTTTRATIDLTQKAAKA 539 (786)
Q Consensus 463 E~~sLT~dER~~Lle~~~~wve~~a~~~e~~-~~~~~~~~~~r~-v-~veevaGRVPVIaGVGa~ST~EAIELAr~Ae~a 539 (786)
.+..++.+|+.++++.|. ++.-. +++ ++. ..+-+++. + .+...+.+..|.+.+- ...++ ++.|.++
T Consensus 15 ~~~~~s~~~k~~ia~~L~---~~Gv~--~IEvG~p-~~~~~~~e~i~~i~~~~~~~~v~~~~r-~~~~d----i~~a~~~ 83 (363)
T TIGR02090 15 PGVSLTVEQKVEIARKLD---ELGVD--VIEAGFP-IASEGEFEAIKKISQEGLNAEICSLAR-ALKKD----IDKAIDC 83 (363)
T ss_pred CCCCCCHHHHHHHHHHHH---HcCCC--EEEEeCC-CCChHHHHHHHHHHhcCCCcEEEEEcc-cCHHH----HHHHHHc
Confidence 357899999999999833 11000 000 000 00000000 0 0111233455554443 23333 5567788
Q ss_pred CCCEEEEcCCCC-----CCCCCCHHHHHHHHHHHHhc---CCCCEEEEeCCCCcCCccCHHHHHHHH----hC-CCEEEE
Q psy11975 540 GANAALILCPYY-----FQKKMTEDLIYEHFISVADN---SPIPVIIYNNTFVTNIDISVDTLVKLA----HH-ENIRGV 606 (786)
Q Consensus 540 GADAVmViPPyY-----~kps~S~eeLv~YFraIAeA---tdLPIiLYNiP~~TGv~LSpelL~rLA----ei-PNVVGI 606 (786)
|++.|-+.-|.- .+...+.++.++-..+..+. .++.+.+ ++- .....+++.+.+++ +. ...+.+
T Consensus 84 g~~~i~i~~~~Sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~-~~e--da~r~~~~~l~~~~~~~~~~g~~~i~l 160 (363)
T TIGR02090 84 GVDSIHTFIATSPIHLKYKLKKSRDEVLEKAVEAVEYAKEHGLIVEF-SAE--DATRTDIDFLIKVFKRAEEAGADRINI 160 (363)
T ss_pred CcCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEE-EEe--ecCCCCHHHHHHHHHHHHhCCCCEEEE
Confidence 999998876631 11123455555544443332 3555443 322 22345678777765 22 678999
Q ss_pred EeC----CHHHHHHHHhhcC---CCCEEEEeCCcch------hhhhhccCC---ccccccc----cccccHHHHHHHHHH
Q psy11975 607 KDT----DNIKLANMANQTK---DLNFSVFAGSAGY------LLSGLLVGC---AGGINAL----SAVLGGPICELYDLA 666 (786)
Q Consensus 607 KDS----Dl~ri~~ll~~~~---~~df~Vf~G~Del------LL~aL~~GA---dG~Isg~----aN~~Pel~vaL~eA~ 666 (786)
+|+ .+.++.++++... +-.+. |-+++.+ .+.++.+|+ ++.+.|+ +|..-+.++...+..
T Consensus 161 ~DT~G~~~P~~v~~li~~l~~~~~~~l~-~H~Hnd~GlA~AN~laA~~aGa~~vd~s~~GlGeraGN~~lE~vv~~L~~~ 239 (363)
T TIGR02090 161 ADTVGVLTPQKMEELIKKLKENVKLPIS-VHCHNDFGLATANSIAGVKAGAEQVHVTVNGIGERAGNAALEEVVMALKYL 239 (363)
T ss_pred eCCCCccCHHHHHHHHHHHhcccCceEE-EEecCCCChHHHHHHHHHHCCCCEEEEEeeccccccccccHHHHHHHHHHh
Confidence 999 6677766655321 11233 4555542 355777887 3455554 555556555555432
Q ss_pred Hc----CCHHHHHHHHHHhhhhHHHHHhhhhccccCHHHHHHHHHHcCCCC-CCC--CCCCCCCCCHHH-----------
Q psy11975 667 KA----GKWEEAMKLQHRLVKPDVTVRNVLLMKEMGVPGVRAAMELYGYYG-GRS--RRPLPAALKPGG----------- 728 (786)
Q Consensus 667 ~a----GD~eeAreLQ~rL~pLi~~l~~~~~~~~~~ia~lKaaL~lrGI~~-G~v--R~PL~~pLseee----------- 728 (786)
.. =|+++..++.+.+..+...- ......+.+.-+.-..-|+-. |.. +..+. +++++.
T Consensus 240 ~g~~~~idl~~l~~~~~~~~~~~~~~----~~~~~pivG~~~f~h~sGiH~~~i~k~~~~Ye-~~~P~~vG~~~~~~~g~ 314 (363)
T TIGR02090 240 YGVKTKIKTEKLYETSRLVSELSGVK----VPPNKAIVGENAFAHESGIHVDGVIENPLTYE-PISPEVVGNKRRIILGK 314 (363)
T ss_pred hCCCCCcCHHHHHHHHHHHHHHHCcC----CCCCCCchhHHHHHHhcchhHHHHcCCcccCC-CCCHHHcCCcceeechh
Confidence 21 25555555555444333110 011111222222223445431 222 22344 555544
Q ss_pred ---HHHHHHHHHHcCCC
Q psy11975 729 ---AEKIKQVLTEAGFL 742 (786)
Q Consensus 729 ---kaeL~~~L~~lGll 742 (786)
+..|+..|+++|+.
T Consensus 315 ~SG~~~i~~~l~~~g~~ 331 (363)
T TIGR02090 315 HSGRHAVEAKLKELGIK 331 (363)
T ss_pred hccHHHHHHHHHHcCCC
Confidence 67778888888874
No 167
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=70.64 E-value=14 Score=38.85 Aligned_cols=51 Identities=16% Similarity=0.262 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHhcCCCCEEEEeCCC
Q psy11975 527 RATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTF 583 (786)
Q Consensus 527 ~EAIELAr~Ae~aGADAVmViPPyY~kps~S~eeLv~YFraIAeAtdLPIiLYNiP~ 583 (786)
++..++++.+.+.|+|++++-.- .+.+.+.+.+..+.|-+.+++|++++ |+
T Consensus 11 e~~~~ia~~v~~~gtDaI~VGGS----~gvt~~~~~~~v~~ik~~~~lPvilf--p~ 61 (205)
T TIGR01769 11 DEIEKIAKNAKDAGTDAIMVGGS----LGIVESNLDQTVKKIKKITNLPVILF--PG 61 (205)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCc----CCCCHHHHHHHHHHHHhhcCCCEEEE--CC
Confidence 56677888999999999999753 22358899999999988889999995 75
No 168
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=70.59 E-value=84 Score=34.14 Aligned_cols=143 Identities=12% Similarity=-0.006 Sum_probs=83.7
Q ss_pred CCCeEEE-eCCCCCHHHHHHHHHHHHHc-CCCEE---EEcCCCCCCCCCCHHHHHHHHHHHHhcCCCCEEEEeCCCCcCC
Q psy11975 513 WQADLLK-PQKHTTTRATIDLTQKAAKA-GANAA---LILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNI 587 (786)
Q Consensus 513 GRVPVIa-GVGa~ST~EAIELAr~Ae~a-GADAV---mViPPyY~kps~S~eeLv~YFraIAeAtdLPIiLYNiP~~TGv 587 (786)
.++.++. -.|+.+.+||+..|+.|.++ |-+.| ++-.++|..|+ .-+.++--+.+.+ =+.-|+-|=.|.
T Consensus 61 ~~~~lLPNTaGc~tA~EAv~~A~laRe~~~t~wIKLEVi~D~~~L~PD--~~etl~Aae~Lv~-eGF~VlPY~~~D---- 133 (247)
T PF05690_consen 61 SGYTLLPNTAGCRTAEEAVRTARLAREAFGTNWIKLEVIGDDKTLLPD--PIETLKAAEILVK-EGFVVLPYCTDD---- 133 (247)
T ss_dssp CTSEEEEE-TT-SSHHHHHHHHHHHHHTTS-SEEEE--BS-TTT--B---HHHHHHHHHHHHH-TT-EEEEEE-S-----
T ss_pred cCCEECCcCCCCCCHHHHHHHHHHHHHHcCCCeEEEEEeCCCCCcCCC--hhHHHHHHHHHHH-CCCEEeecCCCC----
Confidence 4677777 45678899999999999998 55555 44556776776 8888888888874 367777777653
Q ss_pred ccCHHHHHHHHhCCCEEEEEeC----------CHHHHHHHHhhcCCCCEEEEeCCc--chhhhhhccCCccccccccccc
Q psy11975 588 DISVDTLVKLAHHENIRGVKDT----------DNIKLANMANQTKDLNFSVFAGSA--GYLLSGLLVGCAGGINALSAVL 655 (786)
Q Consensus 588 ~LSpelL~rLAeiPNVVGIKDS----------Dl~ri~~ll~~~~~~df~Vf~G~D--elLL~aL~~GAdG~Isg~aN~~ 655 (786)
+-+-++|.+..--+=+=-. +...++.++++. +-.+-|=.|-. .....++.+|++|++.-++-.-
T Consensus 134 ---~v~akrL~d~GcaavMPlgsPIGSg~Gi~n~~~l~~i~~~~-~vPvIvDAGiG~pSdaa~AMElG~daVLvNTAiA~ 209 (247)
T PF05690_consen 134 ---PVLAKRLEDAGCAAVMPLGSPIGSGRGIQNPYNLRIIIERA-DVPVIVDAGIGTPSDAAQAMELGADAVLVNTAIAK 209 (247)
T ss_dssp ---HHHHHHHHHTT-SEBEEBSSSTTT---SSTHHHHHHHHHHG-SSSBEEES---SHHHHHHHHHTT-SEEEESHHHHT
T ss_pred ---HHHHHHHHHCCCCEEEecccccccCcCCCCHHHHHHHHHhc-CCcEEEeCCCCCHHHHHHHHHcCCceeehhhHHhc
Confidence 5666777654322212111 556666666533 33344444443 3577889999999988876544
Q ss_pred cHHHHHHHHHH
Q psy11975 656 GGPICELYDLA 666 (786)
Q Consensus 656 Pel~vaL~eA~ 666 (786)
.+--+.|-+||
T Consensus 210 A~dPv~MA~Af 220 (247)
T PF05690_consen 210 AKDPVAMARAF 220 (247)
T ss_dssp SSSHHHHHHHH
T ss_pred cCCHHHHHHHH
Confidence 33334444444
No 169
>PLN02826 dihydroorotate dehydrogenase
Probab=70.59 E-value=93 Score=36.01 Aligned_cols=143 Identities=11% Similarity=0.026 Sum_probs=79.7
Q ss_pred CeEEEeCCCC-----CHHHHHHHHHHHHHcCCCEEEEc--CCCCC--CCCCCHHHHHHHHHHHHhc---------CCCCE
Q psy11975 515 ADLLKPQKHT-----TTRATIDLTQKAAKAGANAALIL--CPYYF--QKKMTEDLIYEHFISVADN---------SPIPV 576 (786)
Q Consensus 515 VPVIaGVGa~-----ST~EAIELAr~Ae~aGADAVmVi--PPyY~--kps~S~eeLv~YFraIAeA---------tdLPI 576 (786)
.||++.+|.+ ..+|-++.++.+.. .||++.+= .|..- ......+.+.+.+++|.++ ..+||
T Consensus 187 ~~lgvnIg~nk~~~~~~~Dy~~~~~~~~~-~aDylelNiScPNtpglr~lq~~~~l~~ll~~V~~~~~~~~~~~~~~~Pv 265 (409)
T PLN02826 187 GILGVNLGKNKTSEDAAADYVQGVRALSQ-YADYLVINVSSPNTPGLRKLQGRKQLKDLLKKVLAARDEMQWGEEGPPPL 265 (409)
T ss_pred ceEEEEeccCCCCcccHHHHHHHHHHHhh-hCCEEEEECCCCCCCCcccccChHHHHHHHHHHHHHHHHhhhccccCCce
Confidence 4899999887 56777777777765 49998754 23321 1112456677777777533 36898
Q ss_pred EEEeCCCCcCCccCHHH---HHHHHh---CCCEEEEEeC-----C----------------------HHHHHHHHhhcCC
Q psy11975 577 IIYNNTFVTNIDISVDT---LVKLAH---HENIRGVKDT-----D----------------------NIKLANMANQTKD 623 (786)
Q Consensus 577 iLYNiP~~TGv~LSpel---L~rLAe---iPNVVGIKDS-----D----------------------l~ri~~ll~~~~~ 623 (786)
++==-|. ++.+. +++++. ...|+.+--+ | +..+.++.+ ..+
T Consensus 266 ~vKlaPd-----l~~~di~~ia~~a~~~G~dGIi~~NTt~~r~~dl~~~~~~~~~GGlSG~pl~~~sl~~v~~l~~-~~~ 339 (409)
T PLN02826 266 LVKIAPD-----LSKEDLEDIAAVALALGIDGLIISNTTISRPDSVLGHPHADEAGGLSGKPLFDLSTEVLREMYR-LTR 339 (409)
T ss_pred EEecCCC-----CCHHHHHHHHHHHHHcCCCEEEEEcccCcCccchhcccccccCCCcCCccccHHHHHHHHHHHH-HhC
Confidence 8876663 54444 344332 4455444210 0 112222322 233
Q ss_pred CCEEEEe--CCc--chhhhhhccCCccccccccccc--cHHHHHHHH
Q psy11975 624 LNFSVFA--GSA--GYLLSGLLVGCAGGINALSAVL--GGPICELYD 664 (786)
Q Consensus 624 ~df~Vf~--G~D--elLL~aL~~GAdG~Isg~aN~~--Pel~vaL~e 664 (786)
+++.|+. |-. +..++.+.+||+.+-.+++.++ |.++.+|.+
T Consensus 340 ~~ipIIgvGGI~sg~Da~e~i~AGAs~VQv~Ta~~~~Gp~~i~~I~~ 386 (409)
T PLN02826 340 GKIPLVGCGGVSSGEDAYKKIRAGASLVQLYTAFAYEGPALIPRIKA 386 (409)
T ss_pred CCCcEEEECCCCCHHHHHHHHHhCCCeeeecHHHHhcCHHHHHHHHH
Confidence 4455432 222 2367788899988877776655 554444444
No 170
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=69.94 E-value=52 Score=38.51 Aligned_cols=127 Identities=12% Similarity=0.106 Sum_probs=80.1
Q ss_pred CCCCeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHhcC-CCCEEEEeCCCCcCCccC
Q psy11975 512 EWQADLLKPQKHTTTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNS-PIPVIIYNNTFVTNIDIS 590 (786)
Q Consensus 512 aGRVPVIaGVGa~ST~EAIELAr~Ae~aGADAVmViPPyY~kps~S~eeLv~YFraIAeAt-dLPIiLYNiP~~TGv~LS 590 (786)
.|++.|=+.++.. .+..+.++...++|+|.+++-.+.- ..+.+++..+.|.+.. ++||++ |.-++
T Consensus 214 ~g~l~V~aai~~~--~~~~e~a~~L~~agvdvivvD~a~g-----~~~~vl~~i~~i~~~~p~~~vi~-------g~v~t 279 (486)
T PRK05567 214 QGRLRVGAAVGVG--ADNEERAEALVEAGVDVLVVDTAHG-----HSEGVLDRVREIKAKYPDVQIIA-------GNVAT 279 (486)
T ss_pred CCCEEEEeecccC--cchHHHHHHHHHhCCCEEEEECCCC-----cchhHHHHHHHHHhhCCCCCEEE-------eccCC
Confidence 3455553334432 2568999999999999776655431 1356778888888777 799988 55688
Q ss_pred HHHHHHHHhCCCEEEEEeC------------------CHHHHHHHHhhcCCCCEEEEe--CCc--chhhhhhccCCcccc
Q psy11975 591 VDTLVKLAHHENIRGVKDT------------------DNIKLANMANQTKDLNFSVFA--GSA--GYLLSGLLVGCAGGI 648 (786)
Q Consensus 591 pelL~rLAeiPNVVGIKDS------------------Dl~ri~~ll~~~~~~df~Vf~--G~D--elLL~aL~~GAdG~I 648 (786)
.+....|.+. .+-+||-. ++.-+.++.+.....++.|+. |-- ....-+|++||+.+|
T Consensus 280 ~e~a~~l~~a-Gad~i~vg~g~gs~~~~r~~~~~g~p~~~~~~~~~~~~~~~~~~viadGGi~~~~di~kAla~GA~~v~ 358 (486)
T PRK05567 280 AEAARALIEA-GADAVKVGIGPGSICTTRIVAGVGVPQITAIADAAEAAKKYGIPVIADGGIRYSGDIAKALAAGASAVM 358 (486)
T ss_pred HHHHHHHHHc-CCCEEEECCCCCccccceeecCCCcCHHHHHHHHHHHhccCCCeEEEcCCCCCHHHHHHHHHhCCCEEE
Confidence 9999888864 22223221 233444444322233566665 332 246788999999999
Q ss_pred ccccc
Q psy11975 649 NALSA 653 (786)
Q Consensus 649 sg~aN 653 (786)
.|..-
T Consensus 359 ~G~~~ 363 (486)
T PRK05567 359 LGSML 363 (486)
T ss_pred ECccc
Confidence 88753
No 171
>TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2. Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids.
Probab=69.55 E-value=1.6e+02 Score=32.83 Aligned_cols=82 Identities=16% Similarity=0.101 Sum_probs=52.3
Q ss_pred CCeEEEeCCCCCHHH--HHHHHHHHHHcCCCEEEEcCCCCC---CCC--CCHHHHHHHHHHHHhcCCCCEEEEeCCCCcC
Q psy11975 514 QADLLKPQKHTTTRA--TIDLTQKAAKAGANAALILCPYYF---QKK--MTEDLIYEHFISVADNSPIPVIIYNNTFVTN 586 (786)
Q Consensus 514 RVPVIaGVGa~ST~E--AIELAr~Ae~aGADAVmViPPyY~---kps--~S~eeLv~YFraIAeAtdLPIiLYNiP~~TG 586 (786)
.+|+|+.+++....+ .-+..+..+.++|||+-+--+... .+. .+-+.+++.++.|.+.+++||++=-. |
T Consensus 113 ~~p~i~nl~~~~~~~~~~~~~~~~i~~i~adal~i~ln~~q~~~~p~g~~~f~~~le~i~~i~~~~~vPVivK~~----g 188 (333)
T TIGR02151 113 NGPLIANIGAPQLVEGGPEEAQEAIDMIEADALAIHLNVLQELVQPEGDRNFKGWLEKIAEICSQLSVPVIVKEV----G 188 (333)
T ss_pred CCcEEeecCchhhccccHHHHHHHHHHhcCCCEEEcCcccccccCCCCCcCHHHHHHHHHHHHHhcCCCEEEEec----C
Confidence 579999888755533 223344445567888776543211 111 12455678899999999999998754 3
Q ss_pred CccCHHHHHHHHh
Q psy11975 587 IDISVDTLVKLAH 599 (786)
Q Consensus 587 v~LSpelL~rLAe 599 (786)
..++.+....|.+
T Consensus 189 ~g~~~~~a~~L~~ 201 (333)
T TIGR02151 189 FGISKEVAKLLAD 201 (333)
T ss_pred CCCCHHHHHHHHH
Confidence 3467888888864
No 172
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=69.42 E-value=19 Score=39.59 Aligned_cols=142 Identities=16% Similarity=0.065 Sum_probs=85.2
Q ss_pred CCeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEcC--CCC--CCCC------CCHHHHHHHHHHHHhcCCCCEEEEeCCC
Q psy11975 514 QADLLKPQKHTTTRATIDLTQKAAKAGANAALILC--PYY--FQKK------MTEDLIYEHFISVADNSPIPVIIYNNTF 583 (786)
Q Consensus 514 RVPVIaGVGa~ST~EAIELAr~Ae~aGADAVmViP--PyY--~kps------~S~eeLv~YFraIAeAtdLPIiLYNiP~ 583 (786)
..|+++++++++.+..++.|+.+++.|+|+|=+=. |.- .+-+ .+.+.+.+..+++.+++++||-+=-
T Consensus 53 ~~p~~~Ql~g~~~~~~~~aa~~~~~~~~~~IDlN~GCP~~~v~~~g~Ga~Ll~~p~~~~~iv~~~~~~~~~pvsvKi--- 129 (309)
T PF01207_consen 53 ERPLIVQLFGNDPEDLAEAAEIVAELGFDGIDLNMGCPAPKVTKGGAGAALLKDPDLLAEIVKAVRKAVPIPVSVKI--- 129 (309)
T ss_dssp T-TEEEEEE-S-HHHHHHHHHHHCCTT-SEEEEEE---SHHHHHCT-GGGGGC-HHHHHHHHHHHHHH-SSEEEEEE---
T ss_pred ccceeEEEeeccHHHHHHHHHhhhccCCcEEeccCCCCHHHHhcCCcChhhhcChHHhhHHHHhhhcccccceEEec---
Confidence 36899999999999999999999999999986532 321 0000 2588999999999999999987643
Q ss_pred CcCCccCHHHH----HHHHhCCCEEEE---------EeC---CHHHHHHHHhhcCCCCEEEEeCCcch---hhhhhcc-C
Q psy11975 584 VTNIDISVDTL----VKLAHHENIRGV---------KDT---DNIKLANMANQTKDLNFSVFAGSAGY---LLSGLLV-G 643 (786)
Q Consensus 584 ~TGv~LSpelL----~rLAeiPNVVGI---------KDS---Dl~ri~~ll~~~~~~df~Vf~G~Del---LL~aL~~-G 643 (786)
+.|.+-+.+.+ ..|.+.+ +.+| ++. |++.+.++.+. .. -..+.+|+=.. +...+.. |
T Consensus 130 R~g~~~~~~~~~~~~~~l~~~G-~~~i~vH~Rt~~q~~~~~a~w~~i~~i~~~-~~-ipvi~NGdI~s~~d~~~~~~~tg 206 (309)
T PF01207_consen 130 RLGWDDSPEETIEFARILEDAG-VSAITVHGRTRKQRYKGPADWEAIAEIKEA-LP-IPVIANGDIFSPEDAERMLEQTG 206 (309)
T ss_dssp ESECT--CHHHHHHHHHHHHTT---EEEEECS-TTCCCTS---HHHHHHCHHC--T-SEEEEESS--SHHHHHHHCCCH-
T ss_pred ccccccchhHHHHHHHHhhhcc-cceEEEecCchhhcCCcccchHHHHHHhhc-cc-ceeEEcCccCCHHHHHHHHHhcC
Confidence 56665333333 3333333 5555 333 78888887763 22 23455664222 2333443 9
Q ss_pred Ccccccccccc-ccHHHHH
Q psy11975 644 CAGGINALSAV-LGGPICE 661 (786)
Q Consensus 644 AdG~Isg~aN~-~Pel~va 661 (786)
++|+|.|-+.+ -|.++.+
T Consensus 207 ~dgvMigRgal~nP~lf~~ 225 (309)
T PF01207_consen 207 ADGVMIGRGALGNPWLFRE 225 (309)
T ss_dssp SSEEEESHHHCC-CCHHCH
T ss_pred CcEEEEchhhhhcCHHhhh
Confidence 99999998775 6888886
No 173
>cd03309 CmuC_like CmuC_like. Proteins similar to the putative corrinoid methyltransferase CmuC. Its function has been inferred from sequence similarity to the methyltransferases CmuA and MtaA. Mutants of Methylobacterium sp. disrupted in cmuC and purU appear deficient in some step of chloromethane metabolism.
Probab=69.01 E-value=52 Score=36.63 Aligned_cols=100 Identities=10% Similarity=0.020 Sum_probs=59.8
Q ss_pred CHHHHHHHHHHHHHc-CCCEEEEcCCCCCC--CCCCHHHHH----HHHHHHHhcC----CCCEEEEeCCCCcCCccCHHH
Q psy11975 525 TTRATIDLTQKAAKA-GANAALILCPYYFQ--KKMTEDLIY----EHFISVADNS----PIPVIIYNNTFVTNIDISVDT 593 (786)
Q Consensus 525 ST~EAIELAr~Ae~a-GADAVmViPPyY~k--ps~S~eeLv----~YFraIAeAt----dLPIiLYNiP~~TGv~LSpel 593 (786)
.++-.+++++...++ |||+|.+.-+.-.. .-++++... -|+++|.+.. +.|++++.+ |.. ...
T Consensus 153 ltd~~i~y~~~qiea~Gad~I~i~Ddwa~~~~~~LSpe~f~efv~P~~krIi~~ik~~~g~piilH~c----G~~--~~~ 226 (321)
T cd03309 153 LTDAKLKLYERRIKHLEPDLLVYHDDLGSQKGSFISPATFREFILPRMQRIFDFLRSNTSALIVHHSC----GAA--ASL 226 (321)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEeCCCccccCCccCHHHHHHHHHHHHHHHHHHHHhccCCceEEEeC----CCc--HHH
Confidence 467788888877776 99999985543221 002355544 5667888776 468888765 321 345
Q ss_pred HHHHHhCC-CEEEEEeC--CHHHHHHHHhhcCCCCEEEEeCCcc
Q psy11975 594 LVKLAHHE-NIRGVKDT--DNIKLANMANQTKDLNFSVFAGSAG 634 (786)
Q Consensus 594 L~rLAeiP-NVVGIKDS--Dl~ri~~ll~~~~~~df~Vf~G~De 634 (786)
+..+++.+ +++.+=.. |+....+. .++++.+..+.|.
T Consensus 227 l~~~~e~g~dvl~~d~~~~dl~eak~~----~g~k~~l~GNlDp 266 (321)
T cd03309 227 VPSMAEMGVDSWNVVMTANNTAELRRL----LGDKVVLAGAIDD 266 (321)
T ss_pred HHHHHHcCCCEEEecCCCCCHHHHHHH----hCCCeEEEcCCCh
Confidence 67777643 67776444 66555443 3445555555454
No 174
>cd04508 TUDOR Tudor domains are found in many eukaryotic organisms and have been implicated in protein-protein interactions in which methylated protein substrates bind to these domains. For example, the Tudor domain of Survival of Motor Neuron (SMN) binds to symmetrically dimethylated arginines of arginine-glycine (RG) rich sequences found in the C-terminal tails of Sm proteins. The SMN protein is linked to spinal muscular atrophy. Another example is the tandem tudor domains of 53BP1, which bind to histone H4 specifically dimethylated at Lys20 (H4-K20me2). 53BP1 is a key transducer of the DNA damage checkpoint signal.
Probab=68.87 E-value=3.8 Score=32.05 Aligned_cols=46 Identities=24% Similarity=0.278 Sum_probs=35.7
Q ss_pred CceEEEeccc-CCCCCccccCCCCCCCcEEEEEeCCCCCccccccccccc
Q psy11975 360 GDLVWGSVKG-YPSWPGKLISPAPTQGRVWVKWFGMSNEPLSEVEPATLK 408 (786)
Q Consensus 360 GDLVWaKvkG-~PwWPg~V~~~~~~~g~~~V~fFG~~~~a~s~V~~k~Lk 408 (786)
|++|.|+... --|.+|+|.+... .+.+.|.|...+.. ..|+.++|+
T Consensus 1 G~~c~a~~~~d~~wyra~V~~~~~-~~~~~V~f~DyG~~--~~v~~~~l~ 47 (48)
T cd04508 1 GDLCLAKYSDDGKWYRAKITSILS-DGKVEVFFVDYGNT--EVVPLSDLR 47 (48)
T ss_pred CCEEEEEECCCCeEEEEEEEEECC-CCcEEEEEEcCCCc--EEEeHHHcC
Confidence 7889999886 7899999999775 67899999988743 335655654
No 175
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=68.78 E-value=2.8e+02 Score=33.84 Aligned_cols=159 Identities=9% Similarity=0.099 Sum_probs=87.1
Q ss_pred EEeCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHhcCC--CCEEEEeCCCCcCCccCHHHHH
Q psy11975 518 LKPQKHTTTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSP--IPVIIYNNTFVTNIDISVDTLV 595 (786)
Q Consensus 518 IaGVGa~ST~EAIELAr~Ae~aGADAVmViPPyY~kps~S~eeLv~YFraIAeAtd--LPIiLYNiP~~TGv~LSpelL~ 595 (786)
++|.....-.-.....+.|.+.|+|-+=+....- +.+.+....+.+-++-. ...+.|-. ....+++.+.
T Consensus 87 ~vGy~~~~d~vv~~~v~~a~~~Gidv~Rifd~ln-----d~~n~~~~i~~~k~~G~~~~~~i~yt~----sp~~t~e~~~ 157 (596)
T PRK14042 87 LLGYRNYADDVVRAFVKLAVNNGVDVFRVFDALN-----DARNLKVAIDAIKSHKKHAQGAICYTT----SPVHTLDNFL 157 (596)
T ss_pred ccccccCChHHHHHHHHHHHHcCCCEEEEcccCc-----chHHHHHHHHHHHHcCCEEEEEEEecC----CCCCCHHHHH
Confidence 4466554433344478889999999888876432 24556666666654322 23444543 2246677776
Q ss_pred HHH----hC-CCEEEEEeC----CHHHHHHHHhhc---CCCCEEEEeCCcc------hhhhhhccCCc---ccccccc--
Q psy11975 596 KLA----HH-ENIRGVKDT----DNIKLANMANQT---KDLNFSVFAGSAG------YLLSGLLVGCA---GGINALS-- 652 (786)
Q Consensus 596 rLA----ei-PNVVGIKDS----Dl~ri~~ll~~~---~~~df~Vf~G~De------lLL~aL~~GAd---G~Isg~a-- 652 (786)
+++ +. ...++|||+ .+.++.+++.+. .+-.+. +-+++. ..+.++.+|++ +++++++
T Consensus 158 ~~ak~l~~~Gad~I~IkDtaG~l~P~~v~~lv~alk~~~~ipi~-~H~Hnt~Gla~an~laAieaGad~iD~ai~glGg~ 236 (596)
T PRK14042 158 ELGKKLAEMGCDSIAIKDMAGLLTPTVTVELYAGLKQATGLPVH-LHSHSTSGLASICHYEAVLAGCNHIDTAISSFSGG 236 (596)
T ss_pred HHHHHHHHcCCCEEEeCCcccCCCHHHHHHHHHHHHhhcCCEEE-EEeCCCCCcHHHHHHHHHHhCCCEEEeccccccCC
Confidence 666 33 579999999 666666555422 222232 445543 24567778874 4444443
Q ss_pred --ccccHHHHHHHHHHH---cCCHHHHHHHHHHhhhhHH
Q psy11975 653 --AVLGGPICELYDLAK---AGKWEEAMKLQHRLVKPDV 686 (786)
Q Consensus 653 --N~~Pel~vaL~eA~~---aGD~eeAreLQ~rL~pLi~ 686 (786)
|..-+.++..++... .=|++...++.+.+.+++.
T Consensus 237 tGn~~tE~lv~~L~~~g~~tgidl~~l~~~~~~~~~vr~ 275 (596)
T PRK14042 237 ASHPPTEALVAALTDTPYDTELDLNILLEIDDYFKAVRK 275 (596)
T ss_pred CCcHhHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHH
Confidence 333344444333211 0144555555555555443
No 176
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=68.62 E-value=1.6e+02 Score=33.04 Aligned_cols=126 Identities=14% Similarity=0.117 Sum_probs=74.2
Q ss_pred HHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHhcCCCCEEEEeCCCCcCCccCHHHHHHHH----hC-CCEEE
Q psy11975 531 DLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLA----HH-ENIRG 605 (786)
Q Consensus 531 ELAr~Ae~aGADAVmViPPyY~kps~S~eeLv~YFraIAeAtdLPIiLYNiP~~TGv~LSpelL~rLA----ei-PNVVG 605 (786)
+-.+.|.+.|+|.|-+.. ..+ ..+.+.++++ .+...++-+.++=. .+ ...+++.+.+++ +. +..++
T Consensus 92 ~dl~~a~~~gvd~iri~~----~~~-e~~~~~~~i~-~ak~~G~~v~~~l~--~a-~~~~~e~l~~~a~~~~~~Ga~~i~ 162 (337)
T PRK08195 92 DDLKMAYDAGVRVVRVAT----HCT-EADVSEQHIG-LARELGMDTVGFLM--MS-HMAPPEKLAEQAKLMESYGAQCVY 162 (337)
T ss_pred HHHHHHHHcCCCEEEEEE----ecc-hHHHHHHHHH-HHHHCCCeEEEEEE--ec-cCCCHHHHHHHHHHHHhCCCCEEE
Confidence 446788899999988764 222 1344445554 44555666555432 22 346788887776 23 78899
Q ss_pred EEeC----CHHHHHHHHhh---cCCCCEEE-EeCCcch------hhhhhccCCc---ccccc----ccccccHHHHHHHH
Q psy11975 606 VKDT----DNIKLANMANQ---TKDLNFSV-FAGSAGY------LLSGLLVGCA---GGINA----LSAVLGGPICELYD 664 (786)
Q Consensus 606 IKDS----Dl~ri~~ll~~---~~~~df~V-f~G~Del------LL~aL~~GAd---G~Isg----~aN~~Pel~vaL~e 664 (786)
|+|| .+.++.+++++ ..++++.| |-+++.+ .+.++.+|++ |.+.| .+|..-|.++.+++
T Consensus 163 i~DT~G~~~P~~v~~~v~~l~~~l~~~i~ig~H~HnnlGla~ANslaAi~aGa~~iD~Sl~GlG~~aGN~~tE~lv~~L~ 242 (337)
T PRK08195 163 VVDSAGALLPEDVRDRVRALRAALKPDTQVGFHGHNNLGLGVANSLAAVEAGATRIDGSLAGLGAGAGNTPLEVLVAVLD 242 (337)
T ss_pred eCCCCCCCCHHHHHHHHHHHHHhcCCCCeEEEEeCCCcchHHHHHHHHHHhCCCEEEecChhhcccccCccHHHHHHHHH
Confidence 9999 55555544432 23334443 6677654 2457778863 44443 45655577766665
Q ss_pred H
Q psy11975 665 L 665 (786)
Q Consensus 665 A 665 (786)
.
T Consensus 243 ~ 243 (337)
T PRK08195 243 R 243 (337)
T ss_pred h
Confidence 4
No 177
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=68.54 E-value=82 Score=32.50 Aligned_cols=129 Identities=10% Similarity=0.055 Sum_probs=69.2
Q ss_pred CCeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHhcCCCCEEEEe-----CCCCcCCc
Q psy11975 514 QADLLKPQKHTTTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYN-----NTFVTNID 588 (786)
Q Consensus 514 RVPVIaGVGa~ST~EAIELAr~Ae~aGADAVmViPPyY~kps~S~eeLv~YFraIAeAtdLPIiLYN-----iP~~TGv~ 588 (786)
.+||++|-|=.+.+++.+ +.++|||+|++-.-.+-. .+.+.+..+...++.-+++=+++ ........
T Consensus 74 ~~pv~~~GGI~~~ed~~~----~~~~Ga~~vilg~~~l~~----~~~l~ei~~~~~~~i~vsid~k~~~v~~~g~~~~~~ 145 (233)
T PRK00748 74 DIPVQVGGGIRSLETVEA----LLDAGVSRVIIGTAAVKN----PELVKEACKKFPGKIVVGLDARDGKVATDGWLETSG 145 (233)
T ss_pred CCCEEEcCCcCCHHHHHH----HHHcCCCEEEECchHHhC----HHHHHHHHHHhCCCceeeeeccCCEEEEccCeecCC
Confidence 468999777666666544 444799999888766533 33444444443332222222211 11111124
Q ss_pred cCHHHH-HHHHh--CCCEEEEEeC--------CHHHHHHHHhhcCCCCEEEEeCCc----chhhhhhccC-Ccccccccc
Q psy11975 589 ISVDTL-VKLAH--HENIRGVKDT--------DNIKLANMANQTKDLNFSVFAGSA----GYLLSGLLVG-CAGGINALS 652 (786)
Q Consensus 589 LSpelL-~rLAe--iPNVVGIKDS--------Dl~ri~~ll~~~~~~df~Vf~G~D----elLL~aL~~G-AdG~Isg~a 652 (786)
.++..+ .++.+ ...|+..-.+ |++.+.++.+. .+ +.++.+.+ +.+...+..| ++|++.|.+
T Consensus 146 ~~~~e~~~~~~~~g~~~ii~~~~~~~g~~~G~d~~~i~~l~~~-~~--ipvia~GGi~~~~di~~~~~~g~~~gv~vg~a 222 (233)
T PRK00748 146 VTAEDLAKRFEDAGVKAIIYTDISRDGTLSGPNVEATRELAAA-VP--IPVIASGGVSSLDDIKALKGLGAVEGVIVGRA 222 (233)
T ss_pred CCHHHHHHHHHhcCCCEEEEeeecCcCCcCCCCHHHHHHHHHh-CC--CCEEEeCCCCCHHHHHHHHHcCCccEEEEEHH
Confidence 454444 44434 3456665332 57777777662 22 44444332 2355667777 999999876
Q ss_pred c
Q psy11975 653 A 653 (786)
Q Consensus 653 N 653 (786)
-
T Consensus 223 ~ 223 (233)
T PRK00748 223 L 223 (233)
T ss_pred H
Confidence 3
No 178
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=68.47 E-value=14 Score=40.30 Aligned_cols=118 Identities=14% Similarity=0.164 Sum_probs=0.0
Q ss_pred ccccccceeeecCCCCCCCHHHHHHHHHhCCCCCccCCCccccccCCCCCCCCCCCCCccccCCCCe------EEEeCCC
Q psy11975 450 VSSVSFSHYFKAHSSTSMPIQKRKSLLRKFPLWPELEPSTSELKRSDRPMSVGPRSVRPSEREWQAD------LLKPQKH 523 (786)
Q Consensus 450 ~~~v~~~Gvf~agE~~sLT~dER~~Lle~~~~wve~~a~~~e~~~~~~~~~~~~r~v~veevaGRVP------VIaGVGa 523 (786)
+.++.+.+ ..++.+|..++.+. +++.+. +.-+.+|.-.|.+. -+.|.+.
T Consensus 98 ~tsVm~d~-------s~~~~~eni~~t~~---v~~~a~---------------~~gv~veaE~ghlG~~d~~~~~~g~s~ 152 (281)
T PRK06806 98 FTSVMFDG-------SHLPLEENIQKTKE---IVELAK---------------QYGATVEAEIGRVGGSEDGSEDIEMLL 152 (281)
T ss_pred CCEEEEcC-------CCCCHHHHHHHHHH---HHHHHH---------------HcCCeEEEEeeeECCccCCccccccee
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEE--cCCCCCCCCCCHHHHHHHHHHHHhcCCCCEEEEeCCCCcCCccCHHHHHHHHhCC
Q psy11975 524 TTTRATIDLTQKAAKAGANAALI--LCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHHE 601 (786)
Q Consensus 524 ~ST~EAIELAr~Ae~aGADAVmV--iPPyY~kps~S~eeLv~YFraIAeAtdLPIiLYNiP~~TGv~LSpelL~rLAeiP 601 (786)
++.+++.+.++. .|+|.+.+ -+-+-.++. .+.-=++.+++|.+.+++|+++. -|..++.+.+.++.+..
T Consensus 153 t~~eea~~f~~~---tg~DyLAvaiG~~hg~~~~-~~~l~~~~L~~i~~~~~iPlV~h-----G~SGI~~e~~~~~i~~G 223 (281)
T PRK06806 153 TSTTEAKRFAEE---TDVDALAVAIGNAHGMYNG-DPNLRFDRLQEINDVVHIPLVLH-----GGSGISPEDFKKCIQHG 223 (281)
T ss_pred CCHHHHHHHHHh---hCCCEEEEccCCCCCCCCC-CCccCHHHHHHHHHhcCCCEEEE-----CCCCCCHHHHHHHHHcC
No 179
>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4.1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....
Probab=68.38 E-value=26 Score=37.90 Aligned_cols=122 Identities=14% Similarity=0.135 Sum_probs=70.1
Q ss_pred CCeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHhcCCCCEEEEeCCCCcCCccCHHH
Q psy11975 514 QADLLKPQKHTTTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDT 593 (786)
Q Consensus 514 RVPVIaGVGa~ST~EAIELAr~Ae~aGADAVmViPPyY~kps~S~eeLv~YFraIAeAtdLPIiLYNiP~~TGv~LSpel 593 (786)
++||+. -+.----.....|..+|||||+++.-.. +++. +..|-+.|...++-.++=- -+.+.
T Consensus 109 ~~PvL~----KDFIid~~QI~eA~~~GADaVLLI~~~L-----~~~~-l~~l~~~a~~lGle~lVEV--------h~~~E 170 (254)
T PF00218_consen 109 DLPVLR----KDFIIDPYQIYEARAAGADAVLLIAAIL-----SDDQ-LEELLELAHSLGLEALVEV--------HNEEE 170 (254)
T ss_dssp SS-EEE----ES---SHHHHHHHHHTT-SEEEEEGGGS-----GHHH-HHHHHHHHHHTT-EEEEEE--------SSHHH
T ss_pred CCCccc----ccCCCCHHHHHHHHHcCCCEeehhHHhC-----CHHH-HHHHHHHHHHcCCCeEEEE--------CCHHH
Confidence 467776 2222223456678889999999997553 2444 4555556778888776643 13566
Q ss_pred HHHHHh-CCCEEEEEeC-------CHHHHHHHHhhcCCCCEEEEe-CCcc--hhhhhhccCCccccccccc
Q psy11975 594 LVKLAH-HENIRGVKDT-------DNIKLANMANQTKDLNFSVFA-GSAG--YLLSGLLVGCAGGINALSA 653 (786)
Q Consensus 594 L~rLAe-iPNVVGIKDS-------Dl~ri~~ll~~~~~~df~Vf~-G~De--lLL~aL~~GAdG~Isg~aN 653 (786)
+.+..+ -+.|+||=.- |+.+..+++......-+.|.- |-.. .+......|++|++-|.+-
T Consensus 171 l~~al~~~a~iiGINnRdL~tf~vd~~~~~~l~~~ip~~~~~iseSGI~~~~d~~~l~~~G~davLVGe~l 241 (254)
T PF00218_consen 171 LERALEAGADIIGINNRDLKTFEVDLNRTEELAPLIPKDVIVISESGIKTPEDARRLARAGADAVLVGEAL 241 (254)
T ss_dssp HHHHHHTT-SEEEEESBCTTTCCBHTHHHHHHHCHSHTTSEEEEESS-SSHHHHHHHCTTT-SEEEESHHH
T ss_pred HHHHHHcCCCEEEEeCccccCcccChHHHHHHHhhCccceeEEeecCCCCHHHHHHHHHCCCCEEEECHHH
Confidence 666655 4789999775 567777776533223344433 3232 2445567899999988753
No 180
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=68.18 E-value=1.6e+02 Score=32.53 Aligned_cols=139 Identities=15% Similarity=0.089 Sum_probs=83.5
Q ss_pred CCeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHh---cCCCCE--EEEeCCCCcCC-
Q psy11975 514 QADLLKPQKHTTTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVAD---NSPIPV--IIYNNTFVTNI- 587 (786)
Q Consensus 514 RVPVIaGVGa~ST~EAIELAr~Ae~aGADAVmViPPyY~kps~S~eeLv~YFraIAe---AtdLPI--iLYNiP~~TGv- 587 (786)
++||.++.-+... .+.+++|.++|++.||+-...+ ..++=++.-++|.+ +.+++| -|=.+.+.-+-
T Consensus 74 ~vPV~lHLDH~~~---~e~i~~Ai~~GftSVM~DgS~l-----~~eeNi~~T~~vve~Ah~~gv~VEaElG~vgg~ed~~ 145 (283)
T PRK07998 74 DVPVSLHLDHGKT---FEDVKQAVRAGFTSVMIDGAAL-----PFEENIAFTKEAVDFAKSYGVPVEAELGAILGKEDDH 145 (283)
T ss_pred CCCEEEECcCCCC---HHHHHHHHHcCCCEEEEeCCCC-----CHHHHHHHHHHHHHHHHHcCCEEEEEeccCCCccccc
Confidence 6899999988754 4555567889999999965432 24555555555544 446766 34444332111
Q ss_pred ------ccCHHHHHHHH----------hCCCEEEEEeC---CHHHHHHHHhhcCCCCEEEEeCCcc----hhhhhhccCC
Q psy11975 588 ------DISVDTLVKLA----------HHENIRGVKDT---DNIKLANMANQTKDLNFSVFAGSAG----YLLSGLLVGC 644 (786)
Q Consensus 588 ------~LSpelL~rLA----------eiPNVVGIKDS---Dl~ri~~ll~~~~~~df~Vf~G~De----lLL~aL~~GA 644 (786)
.-+|+...+.+ .+.|+-|+--. |++++.++.+. .+-. .|+-|..+ .+-.+...|.
T Consensus 146 ~~~~~~~T~pe~a~~Fv~~TgvD~LAvaiGt~HG~Y~~p~l~~~~l~~I~~~-~~vP-LVlHGgSG~~~e~~~~ai~~Gi 223 (283)
T PRK07998 146 VSEADCKTEPEKVKDFVERTGCDMLAVSIGNVHGLEDIPRIDIPLLKRIAEV-SPVP-LVIHGGSGIPPEILRSFVNYKV 223 (283)
T ss_pred cccccccCCHHHHHHHHHHhCcCeeehhccccccCCCCCCcCHHHHHHHHhh-CCCC-EEEeCCCCCCHHHHHHHHHcCC
Confidence 13566666655 24555554432 78888888663 3222 45555533 4555666776
Q ss_pred ccccccccccccHHHHHHHHHHH
Q psy11975 645 AGGINALSAVLGGPICELYDLAK 667 (786)
Q Consensus 645 dG~Isg~aN~~Pel~vaL~eA~~ 667 (786)
..+ |+.-++..+.+++++
T Consensus 224 ~Ki-----Ni~Tel~~a~~~~~~ 241 (283)
T PRK07998 224 AKV-----NIASDLRKAFITTVG 241 (283)
T ss_pred cEE-----EECHHHHHHHHHHHH
Confidence 654 666677777776664
No 181
>PLN02460 indole-3-glycerol-phosphate synthase
Probab=68.15 E-value=9.3 Score=42.96 Aligned_cols=48 Identities=21% Similarity=0.404 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHcCCCEEEEcC-CCCCCCCCCHHHHHHHHHHHHhc-CCCCEEEEeC
Q psy11975 528 ATIDLTQKAAKAGANAALILC-PYYFQKKMTEDLIYEHFISVADN-SPIPVIIYNN 581 (786)
Q Consensus 528 EAIELAr~Ae~aGADAVmViP-PyY~kps~S~eeLv~YFraIAeA-tdLPIiLYNi 581 (786)
+..++|+.+++.||+|+.|+. +.||.-+ .+|+++|.++ +++||+-=|+
T Consensus 140 dp~~iA~~Ye~~GA~aISVLTd~~~F~Gs------~e~L~~vr~~~v~lPvLrKDF 189 (338)
T PLN02460 140 DPVEIAQAYEKGGAACLSVLTDEKYFQGS------FENLEAIRNAGVKCPLLCKEF 189 (338)
T ss_pred CHHHHHHHHHhCCCcEEEEecCcCcCCCC------HHHHHHHHHcCCCCCEeeccc
Confidence 678999999999999999888 7888876 6888999998 8999998775
No 182
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=67.91 E-value=10 Score=40.89 Aligned_cols=62 Identities=19% Similarity=0.242 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHcCCCEEEEcC-CCCCCCCCCHHHHHHHHHHHHhcCCCCEEEEeCCCCcCCccCHHHHHHHHhC
Q psy11975 527 RATIDLTQKAAKAGANAALILC-PYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHH 600 (786)
Q Consensus 527 ~EAIELAr~Ae~aGADAVmViP-PyY~kps~S~eeLv~YFraIAeAtdLPIiLYNiP~~TGv~LSpelL~rLAei 600 (786)
.+..++|+.+++.||+++.|.. |.||..+ .++++.+.+++++||+.=|+ -+++..+.+....
T Consensus 61 ~d~~~~A~~y~~~GA~aISVlTe~~~F~Gs------~~~l~~v~~~v~~PvL~KDF------Iid~~QI~ea~~~ 123 (247)
T PRK13957 61 YHPVQIAKTYETLGASAISVLTDQSYFGGS------LEDLKSVSSELKIPVLRKDF------ILDEIQIREARAF 123 (247)
T ss_pred CCHHHHHHHHHHCCCcEEEEEcCCCcCCCC------HHHHHHHHHhcCCCEEeccc------cCCHHHHHHHHHc
Confidence 3678999999999999998877 7788876 57888888889999998775 4667777666543
No 183
>PRK15063 isocitrate lyase; Provisional
Probab=67.90 E-value=21 Score=41.37 Aligned_cols=67 Identities=12% Similarity=0.030 Sum_probs=44.6
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHhcCCCCEEEEeC-CCCc-CCccCHHHHHHH
Q psy11975 525 TTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNN-TFVT-NIDISVDTLVKL 597 (786)
Q Consensus 525 ST~EAIELAr~Ae~aGADAVmViPPyY~kps~S~eeLv~YFraIAeAtdLPIiLYNi-P~~T-Gv~LSpelL~rL 597 (786)
.+++||+.++.+++ |||.|.+-... ++ .+++.++-+.|....+.-++.||+ |..+ ...++.+.++..
T Consensus 263 Gld~AI~Ra~AYa~-GAD~iw~Et~~---~d--~ee~~~fa~~v~~~~P~~~layn~sPsfnW~~~~~~~~~~~f 331 (428)
T PRK15063 263 GIEQAIARGLAYAP-YADLIWCETST---PD--LEEARRFAEAIHAKFPGKLLAYNCSPSFNWKKNLDDATIAKF 331 (428)
T ss_pred CHHHHHHHHHHHhc-CCCEEEeCCCC---CC--HHHHHHHHHhhcccCccceeecCCCCCcccccccCHHHHHHH
Confidence 58999999999988 99999876422 33 777777776664332333899986 4432 223666655444
No 184
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=67.72 E-value=1.2e+02 Score=30.57 Aligned_cols=124 Identities=10% Similarity=-0.018 Sum_probs=65.1
Q ss_pred CeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHhcCCCCEEEEeCCCCcCCccCHHHH
Q psy11975 515 ADLLKPQKHTTTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTL 594 (786)
Q Consensus 515 VPVIaGVGa~ST~EAIELAr~Ae~aGADAVmViPPyY~kps~S~eeLv~YFraIAeAtdLPIiLYNiP~~TGv~LSpelL 594 (786)
.|+.+++...... +.++.+.++|||++.+..- + .++..++.+ .+.+.++.+++--.|. -+.+.+
T Consensus 57 ~~v~v~lm~~~~~---~~~~~~~~~gadgv~vh~~----~---~~~~~~~~~-~~~~~g~~~~~~~~~~-----t~~e~~ 120 (210)
T TIGR01163 57 LPIDVHLMVENPD---RYIEDFAEAGADIITVHPE----A---SEHIHRLLQ-LIKDLGAKAGIVLNPA-----TPLEFL 120 (210)
T ss_pred CcEEEEeeeCCHH---HHHHHHHHcCCCEEEEccC----C---chhHHHHHH-HHHHcCCcEEEEECCC-----CCHHHH
Confidence 4566666666543 5677788999999888431 1 233344443 3444565555543331 236677
Q ss_pred HHHHhCCCEEEE---E-----eC-C---HHHHHHHHhh--cCCCCEEE--EeCCcc-hhhhhhccCCcccccccccc
Q psy11975 595 VKLAHHENIRGV---K-----DT-D---NIKLANMANQ--TKDLNFSV--FAGSAG-YLLSGLLVGCAGGINALSAV 654 (786)
Q Consensus 595 ~rLAeiPNVVGI---K-----DS-D---l~ri~~ll~~--~~~~df~V--f~G~De-lLL~aL~~GAdG~Isg~aN~ 654 (786)
.+++.....+++ . .. + +..+.++.+. ....++.+ -.|-.. .+...+..|++|++.|.+-+
T Consensus 121 ~~~~~~~d~i~~~~~~~g~tg~~~~~~~~~~i~~i~~~~~~~~~~~~i~v~GGI~~env~~l~~~gad~iivgsai~ 197 (210)
T TIGR01163 121 EYVLPDVDLVLLMSVNPGFGGQKFIPDTLEKIREVRKMIDENGLSILIEVDGGVNDDNARELAEAGADILVAGSAIF 197 (210)
T ss_pred HHHHhhCCEEEEEEEcCCCCcccccHHHHHHHHHHHHHHHhcCCCceEEEECCcCHHHHHHHHHcCCCEEEEChHHh
Confidence 777643343333 1 12 2 2333333221 11223334 334433 34556789999999887543
No 185
>PLN02460 indole-3-glycerol-phosphate synthase
Probab=67.71 E-value=42 Score=37.97 Aligned_cols=108 Identities=12% Similarity=0.102 Sum_probs=68.8
Q ss_pred HHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHhcCCCCEEEEeCCCCcCCccCHHHHHHHHhC--CCEEEEEeC
Q psy11975 532 LTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHH--ENIRGVKDT 609 (786)
Q Consensus 532 LAr~Ae~aGADAVmViPPyY~kps~S~eeLv~YFraIAeAtdLPIiLYNiP~~TGv~LSpelL~rLAei--PNVVGIKDS 609 (786)
+...|..+|||||+++.-.. +++ -+.+|-++|...++-+++=- =+.+.+.+..+. ..|+||=.-
T Consensus 195 QI~eAr~~GADAVLLIaaiL-----~~~-~L~~l~~~A~~LGme~LVEV--------H~~~ElerAl~~~ga~iIGINNR 260 (338)
T PLN02460 195 QIYYARSKGADAILLIAAVL-----PDL-DIKYMLKICKSLGMAALIEV--------HDEREMDRVLGIEGVELIGINNR 260 (338)
T ss_pred HHHHHHHcCCCcHHHHHHhC-----CHH-HHHHHHHHHHHcCCeEEEEe--------CCHHHHHHHHhcCCCCEEEEeCC
Confidence 45567788999999997542 244 46667778888998777542 125666666654 689999875
Q ss_pred -------CHHHHHHHHh-----hcCCCCEEEEe--CCcc--hhhhhhccCCccccccccc
Q psy11975 610 -------DNIKLANMAN-----QTKDLNFSVFA--GSAG--YLLSGLLVGCAGGINALSA 653 (786)
Q Consensus 610 -------Dl~ri~~ll~-----~~~~~df~Vf~--G~De--lLL~aL~~GAdG~Isg~aN 653 (786)
|+....+++. .....++.+.. |-.. .+.....+|++|++-|-+-
T Consensus 261 dL~Tf~vDl~~t~~L~~~~~~~~i~~~~~~~VsESGI~t~~Dv~~l~~~GadAvLVGEsL 320 (338)
T PLN02460 261 SLETFEVDISNTKKLLEGERGEQIREKGIIVVGESGLFTPDDVAYVQNAGVKAVLVGESL 320 (338)
T ss_pred CCCcceECHHHHHHHhhhccccccCCCCeEEEECCCCCCHHHHHHHHHCCCCEEEECHHH
Confidence 7777777765 11123433332 2221 2334456899999888653
No 186
>COG0327 Uncharacterized conserved protein [Function unknown]
Probab=67.67 E-value=35 Score=36.70 Aligned_cols=129 Identities=14% Similarity=0.102 Sum_probs=75.6
Q ss_pred eEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHhc---CCCCEEEEeCCCCcCCcc-CH
Q psy11975 516 DLLKPQKHTTTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADN---SPIPVIIYNNTFVTNIDI-SV 591 (786)
Q Consensus 516 PVIaGVGa~ST~EAIELAr~Ae~aGADAVmViPPyY~kps~S~eeLv~YFraIAeA---tdLPIiLYNiP~~TGv~L-Sp 591 (786)
.|++.+-. +.+.+..|.+.|||.+++-=|.+|++. ....+..+...+... .++.++.||-|--..... ..
T Consensus 38 kV~~avd~-----t~~vi~~Ai~~~ad~ii~HHplif~~~-~~~~~~~~~~~~i~~li~~~I~ly~~HtnlD~~~~g~N~ 111 (250)
T COG0327 38 KVAVALDA-----TLAVLDEAIELGADLLIVHHPLIFWPV-KSLAIDGPKGKRIKALIQNDINLYAAHTNLDAHPEGGND 111 (250)
T ss_pred eEEEEeeC-----CHHHHHHHHHCCCCEEEEcCchhcCCC-ccccccchHHHHHHHHHhCCCeEEEcccccccccccccH
Confidence 35554444 455677788899999999999666653 122233334444433 379999999886432222 34
Q ss_pred HHHHHHH--h--CC------CEEEEEeC-CHHHHHHHHhhc--------------CCCCEEEEeCCcc-hhhhhhccCCc
Q psy11975 592 DTLVKLA--H--HE------NIRGVKDT-DNIKLANMANQT--------------KDLNFSVFAGSAG-YLLSGLLVGCA 645 (786)
Q Consensus 592 elL~rLA--e--iP------NVVGIKDS-Dl~ri~~ll~~~--------------~~~df~Vf~G~De-lLL~aL~~GAd 645 (786)
.++++|. + .+ .+.-+|.. .+..+.+.+++. .-.++.|.+|... ++..+...|+|
T Consensus 112 a~~~~l~~~~~~~~~~~~~g~~g~~~~~~~l~~l~~~i~~~l~~~~~~~~~~~~~~i~rvAv~~G~g~~~~~~a~~~gvD 191 (250)
T COG0327 112 ALAAALLGAEELPPFGEGLGRVGELKEPTTLEELAERIKAKLGRPPLRVVKDGSEEIKRVAVCSGSGQGFLSEAAAEGVD 191 (250)
T ss_pred HHHHHhcCcccccccccccceEEEeCCCCCHHHHHHHHHHHcCCCCEEEccCccccCceEEEEeCCChHHHHHHHHcCCC
Confidence 4556654 2 12 23334444 565555444321 1245677777763 44556778888
Q ss_pred ccccc
Q psy11975 646 GGINA 650 (786)
Q Consensus 646 G~Isg 650 (786)
-+|+|
T Consensus 192 ~~iTG 196 (250)
T COG0327 192 AYITG 196 (250)
T ss_pred EEEEC
Confidence 88877
No 187
>PRK04161 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=67.63 E-value=75 Score=35.87 Aligned_cols=138 Identities=13% Similarity=0.150 Sum_probs=74.2
Q ss_pred HHHHHHHcCCCEEEEcCCCCCCCCCCH---HHHHHHHHHHHhcC---CCCEEE----EeCCC--CcCCc---cCHHHHHH
Q psy11975 532 LTQKAAKAGANAALILCPYYFQKKMTE---DLIYEHFISVADNS---PIPVII----YNNTF--VTNID---ISVDTLVK 596 (786)
Q Consensus 532 LAr~Ae~aGADAVmViPPyY~kps~S~---eeLv~YFraIAeAt---dLPIiL----YNiP~--~TGv~---LSpelL~r 596 (786)
-+++.++.||||+=++- |+.++.++ +.-.+|.++|.+.| +||++| |+.+. ..... +-|+.+.+
T Consensus 112 s~~rike~GadavK~Ll--yy~pD~~~ein~~k~a~vervg~eC~a~dipf~lE~l~Yd~~~~d~~~~eyak~kP~~V~~ 189 (329)
T PRK04161 112 SVKRLKEAGADAVKFLL--YYDVDGDEEINDQKQAYIERIGSECTAEDIPFFLELLTYDERISDNNSAAYAKLKPHKVNG 189 (329)
T ss_pred hHHHHHHhCCCeEEEEE--EECCCCCHHHHHHHHHHHHHHHHHHHHCCCCeEEEEeccCCcccccccHHHHhhChHHHHH
Confidence 47888999999998873 67775333 34456666666554 899886 55322 11111 22444444
Q ss_pred HH-hC----CCEEEEEeC---CH---------------HHH----HHHHhhcCCCCEEEEeCC-cc-hhhh----hhccC
Q psy11975 597 LA-HH----ENIRGVKDT---DN---------------IKL----ANMANQTKDLNFSVFAGS-AG-YLLS----GLLVG 643 (786)
Q Consensus 597 LA-ei----PNVVGIKDS---Dl---------------~ri----~~ll~~~~~~df~Vf~G~-De-lLL~----aL~~G 643 (786)
.+ ++ =+|-=+|-+ ++ ... .+.-+ ..+-.+.++++. +. .+.. +..+|
T Consensus 190 amkefs~~~~gvDVlKvEvPvn~~~veG~~~g~~~yt~~eA~~~f~~~~~-~~~~P~i~LSaGV~~~~F~~~l~~A~~aG 268 (329)
T PRK04161 190 AMKVFSDKRFGVDVLKVEVPVNMAYVEGFTEGEVVYSQEEAIKAFKDQEA-ATHLPYIYLSAGVSAKLFQETLVFAAEAG 268 (329)
T ss_pred HHHHhccCCCCCcEEEEecccccccccccCcccccccHHHHHHHHHHHhc-ccCCCEEEEcCCCCHHHHHHHHHHHHhcC
Confidence 33 22 156666764 21 111 11211 223446666554 32 3333 44578
Q ss_pred Cc--cccccccccccHHHHHHHHHHHcCCHHHHHHH
Q psy11975 644 CA--GGINALSAVLGGPICELYDLAKAGKWEEAMKL 677 (786)
Q Consensus 644 Ad--G~Isg~aN~~Pel~vaL~eA~~aGD~eeAreL 677 (786)
+. |+++|=+ .+..-.+.+..++.+.+++.
T Consensus 269 a~fnGvL~GRA-----tW~~~v~~~~~~g~~a~~~w 299 (329)
T PRK04161 269 AQFNGVLCGRA-----TWAGSVPVYITEGEEAARKW 299 (329)
T ss_pred CCcccEEeehh-----hhhhhhhhhhcCCHHHHHHH
Confidence 87 9998865 33334455555565555544
No 188
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=67.22 E-value=1e+02 Score=32.93 Aligned_cols=127 Identities=15% Similarity=0.115 Sum_probs=78.7
Q ss_pred eEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHhcCCCCEEEEeCCCCcCCccCHHHHH
Q psy11975 516 DLLKPQKHTTTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLV 595 (786)
Q Consensus 516 PVIaGVGa~ST~EAIELAr~Ae~aGADAVmViPPyY~kps~S~eeLv~YFraIAeAtdLPIiLYNiP~~TGv~LSpelL~ 595 (786)
-|.+++-+.. ....+..+...++|+.+-+++.|.- + .+.+.. +.+.++.=+++=-+|+..|..+-++.+.
T Consensus 85 ~it~H~Ea~~-~~~~~~i~~Ik~~G~kaGlalnP~T--~---~~~l~~----~l~~vD~VLvMsV~PGf~GQ~fi~~~l~ 154 (229)
T PRK09722 85 FITLHPETIN-GQAFRLIDEIRRAGMKVGLVLNPET--P---VESIKY----YIHLLDKITVMTVDPGFAGQPFIPEMLD 154 (229)
T ss_pred EEEECccCCc-chHHHHHHHHHHcCCCEEEEeCCCC--C---HHHHHH----HHHhcCEEEEEEEcCCCcchhccHHHHH
Confidence 3566776532 3455667888889999999998862 1 333333 3334565555666799999999999999
Q ss_pred HHHhCCCEEEEEeCCHHHHHHHHhhcCCCCE--EEEeCCc-chhhhhhccCCccccccccccc--cHHHHHHHHHHH
Q psy11975 596 KLAHHENIRGVKDTDNIKLANMANQTKDLNF--SVFAGSA-GYLLSGLLVGCAGGINALSAVL--GGPICELYDLAK 667 (786)
Q Consensus 596 rLAeiPNVVGIKDSDl~ri~~ll~~~~~~df--~Vf~G~D-elLL~aL~~GAdG~Isg~aN~~--Pel~vaL~eA~~ 667 (786)
++. ++++++.. .+-++ .|=.|-. +.+.....+|++.++.|.+.+| .+-..+.++.++
T Consensus 155 KI~--------------~lr~~~~~-~~~~~~IeVDGGI~~~~i~~~~~aGad~~V~Gss~iF~~~~d~~~~i~~l~ 216 (229)
T PRK09722 155 KIA--------------ELKALRER-NGLEYLIEVDGSCNQKTYEKLMEAGADVFIVGTSGLFNLDEDIDEAWDIMT 216 (229)
T ss_pred HHH--------------HHHHHHHh-cCCCeEEEEECCCCHHHHHHHHHcCCCEEEEChHHHcCCCCCHHHHHHHHH
Confidence 984 44555542 23333 3323333 3455677899999998865343 223445555544
No 189
>KOG1819|consensus
Probab=66.97 E-value=2.5 Score=49.04 Aligned_cols=7 Identities=29% Similarity=0.145 Sum_probs=3.1
Q ss_pred ccccccc
Q psy11975 250 LSIQDKE 256 (786)
Q Consensus 250 ~~~~~~~ 256 (786)
-+||--.
T Consensus 614 eriqpd~ 620 (990)
T KOG1819|consen 614 ERIQPDP 620 (990)
T ss_pred cccCCCh
Confidence 3455433
No 190
>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional
Probab=66.42 E-value=53 Score=40.47 Aligned_cols=108 Identities=12% Similarity=0.099 Sum_probs=70.3
Q ss_pred HHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHhcCCCCEEEEeCCCCcCCccCHHHHHHHHh-CCCEEEEEeC-
Q psy11975 532 LTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAH-HENIRGVKDT- 609 (786)
Q Consensus 532 LAr~Ae~aGADAVmViPPyY~kps~S~eeLv~YFraIAeAtdLPIiLYNiP~~TGv~LSpelL~rLAe-iPNVVGIKDS- 609 (786)
+...|..+|||+|+++.-.. +++++.++++ .|...++-+++-- =+.+.+.+..+ -..|+||=.-
T Consensus 125 QI~ea~~~GADavLLI~~~L-----~~~~l~~l~~-~a~~lGme~LvEv--------h~~~el~~a~~~ga~iiGINnRd 190 (695)
T PRK13802 125 QIWEARAHGADLVLLIVAAL-----DDAQLKHLLD-LAHELGMTVLVET--------HTREEIERAIAAGAKVIGINARN 190 (695)
T ss_pred HHHHHHHcCCCEeehhHhhc-----CHHHHHHHHH-HHHHcCCeEEEEe--------CCHHHHHHHHhCCCCEEEEeCCC
Confidence 45667789999999997542 3566666555 5677888777643 12456666554 4779999766
Q ss_pred ------CHHHHHHHHhhcCCCCEEEEe--CCc--chhhhhhccCCcccccccccc
Q psy11975 610 ------DNIKLANMANQTKDLNFSVFA--GSA--GYLLSGLLVGCAGGINALSAV 654 (786)
Q Consensus 610 ------Dl~ri~~ll~~~~~~df~Vf~--G~D--elLL~aL~~GAdG~Isg~aN~ 654 (786)
|+....+++.. .+.++.++. |-. +.+.....+|++|++-|.+-+
T Consensus 191 L~tf~vd~~~t~~L~~~-ip~~~~~VsESGI~~~~d~~~l~~~G~davLIGeslm 244 (695)
T PRK13802 191 LKDLKVDVNKYNELAAD-LPDDVIKVAESGVFGAVEVEDYARAGADAVLVGEGVA 244 (695)
T ss_pred CccceeCHHHHHHHHhh-CCCCcEEEEcCCCCCHHHHHHHHHCCCCEEEECHHhh
Confidence 77777777763 344444333 322 224445578999998887654
No 191
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=66.37 E-value=85 Score=33.95 Aligned_cols=63 Identities=16% Similarity=0.183 Sum_probs=43.2
Q ss_pred CCCeEEEeCCC-CCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCC-------HHHHHHHHHHHHhcCCCCEEE
Q psy11975 513 WQADLLKPQKH-TTTRATIDLTQKAAKAGANAALILCPYYFQKKMT-------EDLIYEHFISVADNSPIPVII 578 (786)
Q Consensus 513 GRVPVIaGVGa-~ST~EAIELAr~Ae~aGADAVmViPPyY~kps~S-------~eeLv~YFraIAeAtdLPIiL 578 (786)
+...+|+|-+. .+.+.+++.|+++.++|+. ++-++++||..+ .++-+++++++++..++|++.
T Consensus 24 ~~~~~IAGpc~ie~~~~~~~~A~~lk~~~~k---~~r~~~~KpRtsp~s~~g~g~~gl~~l~~~~~~~Gl~~~t 94 (260)
T TIGR01361 24 GSPIVIAGPCSVESEEQIMETARFVKEAGAK---ILRGGAFKPRTSPYSFQGLGEEGLKLLRRAADEHGLPVVT 94 (260)
T ss_pred CcEEEEEeCCccCCHHHHHHHHHHHHHHHHH---hccCceecCCCCCccccccHHHHHHHHHHHHHHhCCCEEE
Confidence 45567887655 4677778888888888776 333555554311 345567788899999999985
No 192
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=66.33 E-value=30 Score=37.42 Aligned_cols=35 Identities=11% Similarity=0.246 Sum_probs=29.0
Q ss_pred CCeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEcCC
Q psy11975 514 QADLLKPQKHTTTRATIDLTQKAAKAGANAALILCP 549 (786)
Q Consensus 514 RVPVIaGVGa~ST~EAIELAr~Ae~aGADAVmViPP 549 (786)
.+||++=+.. +.++.+++++.++++|+|++.+..-
T Consensus 157 ~~pv~vKi~~-~~~~~~~~a~~l~~~G~d~i~v~nt 191 (300)
T TIGR01037 157 DVPVFAKLSP-NVTDITEIAKAAEEAGADGLTLINT 191 (300)
T ss_pred CCCEEEECCC-ChhhHHHHHHHHHHcCCCEEEEEcc
Confidence 4688887763 6689999999999999999998753
No 193
>COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]
Probab=65.96 E-value=75 Score=35.55 Aligned_cols=122 Identities=12% Similarity=0.110 Sum_probs=75.8
Q ss_pred CCeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHhcCCCCEEEEeCCCCcCCccCHHH
Q psy11975 514 QADLLKPQKHTTTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDT 593 (786)
Q Consensus 514 RVPVIaGVGa~ST~EAIELAr~Ae~aGADAVmViPPyY~kps~S~eeLv~YFraIAeAtdLPIiLYNiP~~TGv~LSpel 593 (786)
++||++=++- +..+..+.|+.|.++|+|++.++.-...... +-.....|+.-+-.-+.+|..+-+-.
T Consensus 161 ~~Pv~vKl~P-~~~di~~iA~~~~~~g~Dgl~~~NT~~~~~~------------id~~~~~~~~~~~~GGLSG~~ikp~a 227 (310)
T COG0167 161 KVPVFVKLAP-NITDIDEIAKAAEEAGADGLIAINTTKSGMK------------IDLETKKPVLANETGGLSGPPLKPIA 227 (310)
T ss_pred cCceEEEeCC-CHHHHHHHHHHHHHcCCcEEEEEeecccccc------------ccccccccccCcCCCCcCcccchHHH
Confidence 4899998887 8999999999999999999999975443321 11111255555555556666555544
Q ss_pred HHHHHhCCCEEEEEeCCHHHHHHHHhhcCCCCEEEE--eCCcc--hhhhhhccCCccccccccccc--cHHHHHHHHHH
Q psy11975 594 LVKLAHHENIRGVKDTDNIKLANMANQTKDLNFSVF--AGSAG--YLLSGLLVGCAGGINALSAVL--GGPICELYDLA 666 (786)
Q Consensus 594 L~rLAeiPNVVGIKDSDl~ri~~ll~~~~~~df~Vf--~G~De--lLL~aL~~GAdG~Isg~aN~~--Pel~vaL~eA~ 666 (786)
+.-+ +++.+ ..++++.|+ .|-+. -.++.+++||+-+-.++++++ |.++.+|.+.+
T Consensus 228 l~~v-----------------~~l~~-~~~~~ipIIGvGGI~s~~DA~E~i~aGA~~vQv~Tal~~~Gp~i~~~I~~~l 288 (310)
T COG0167 228 LRVV-----------------AELYK-RLGGDIPIIGVGGIETGEDALEFILAGASAVQVGTALIYKGPGIVKEIIKGL 288 (310)
T ss_pred HHHH-----------------HHHHH-hcCCCCcEEEecCcCcHHHHHHHHHcCCchheeeeeeeeeCchHHHHHHHHH
Confidence 4333 22222 233455532 22222 256778889987777777654 66666666554
No 194
>TIGR01463 mtaA_cmuA methyltransferase, MtaA/CmuA family. This subfamily is closely related to, yet is distinct from, uroporphyrinogen decarboxylase (EC 4.1.1.37). It includes two isozymes from Methanosarcina barkeri of methylcobalamin--coenzyme M methyltransferase. It also includes a chloromethane utilization protein, CmuA, which transfers the methyl group of chloromethane to a corrinoid protein.
Probab=65.89 E-value=2e+02 Score=31.68 Aligned_cols=100 Identities=11% Similarity=-0.053 Sum_probs=60.9
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHH----HHHHHHHHHhcC---CCCEEEEeCCCCcCCccCHHHHHHH
Q psy11975 525 TTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDL----IYEHFISVADNS---PIPVIIYNNTFVTNIDISVDTLVKL 597 (786)
Q Consensus 525 ST~EAIELAr~Ae~aGADAVmViPPyY~kps~S~ee----Lv~YFraIAeAt---dLPIiLYNiP~~TGv~LSpelL~rL 597 (786)
.++..+++++...++|||++.+.-|.-...-++.+. +..|+++|.++. +.+.+++.+ +.+ ...+..+
T Consensus 178 i~~~~~~~~~~~~~~Gad~I~i~dp~a~~~~lsp~~f~e~~~p~~k~i~~~i~~~g~~~ilH~C-G~~-----~~~~~~l 251 (340)
T TIGR01463 178 ALDFVIAYAKAMVEAGADVIAIADPFASSDLISPETYKEFGLPYQKRLFAYIKEIGGITVLHIC-GFT-----QPILRDI 251 (340)
T ss_pred HHHHHHHHHHHHHHcCCCEEEecCCccCccccCHHHHHHHHHHHHHHHHHHHHhcCCceEEEEC-CCc-----hhhHHHH
Confidence 367788899988899999999988864321123543 346778888874 445555544 322 2345666
Q ss_pred HhCC-CEEEEEeC-CHHHHHHHHhhcCCCCEEEEeCCcc
Q psy11975 598 AHHE-NIRGVKDT-DNIKLANMANQTKDLNFSVFAGSAG 634 (786)
Q Consensus 598 AeiP-NVVGIKDS-Dl~ri~~ll~~~~~~df~Vf~G~De 634 (786)
.+.+ +++.+=.. |+....+. .++++.+..|.|.
T Consensus 252 ~~~g~d~ls~d~~~~l~~~~~~----~g~~~~i~Gnidp 286 (340)
T TIGR01463 252 ANNGCFGFSVDMKPGMDHAKRV----IGGQASLVGNLSP 286 (340)
T ss_pred HHhCCCEEeecCCCCHHHHHHH----cCCceEEEecCCh
Confidence 6543 56664444 76654333 3456666666664
No 195
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=65.80 E-value=1.7e+02 Score=33.28 Aligned_cols=135 Identities=13% Similarity=0.093 Sum_probs=80.3
Q ss_pred HHHHHHHHHHcCCCEEEEcCCCC---C--CCCCCHHHHHHHHHHHHhcC---CCCEEEEe-----CCCCcCCccCHHHHH
Q psy11975 529 TIDLTQKAAKAGANAALILCPYY---F--QKKMTEDLIYEHFISVADNS---PIPVIIYN-----NTFVTNIDISVDTLV 595 (786)
Q Consensus 529 AIELAr~Ae~aGADAVmViPPyY---~--kps~S~eeLv~YFraIAeAt---dLPIiLYN-----iP~~TGv~LSpelL~ 595 (786)
..+-++.|.++|+|.|.+..|.- . +...+.++.++-+.++.+.+ ++.+..|- +|.. + ..+++.+.
T Consensus 123 n~~die~A~~~g~~~v~i~~s~Sd~h~~~n~~~t~~e~l~~~~~~v~~Ak~~Gl~v~~~is~~fg~p~~-~-r~~~~~l~ 200 (347)
T PLN02746 123 NLKGFEAAIAAGAKEVAVFASASESFSKSNINCSIEESLVRYREVALAAKKHSIPVRGYVSCVVGCPIE-G-PVPPSKVA 200 (347)
T ss_pred CHHHHHHHHHcCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEeeecCCcc-C-CCCHHHHH
Confidence 34556677888999988876542 1 12245788887666666544 67775333 4432 2 35788777
Q ss_pred HHH----hC-CCEEEEEeC----CHHHHHHHHhhc---CCC-CEEEEeCCcc--h----hhhhhccCCc---ccccc---
Q psy11975 596 KLA----HH-ENIRGVKDT----DNIKLANMANQT---KDL-NFSVFAGSAG--Y----LLSGLLVGCA---GGINA--- 650 (786)
Q Consensus 596 rLA----ei-PNVVGIKDS----Dl~ri~~ll~~~---~~~-df~Vf~G~De--l----LL~aL~~GAd---G~Isg--- 650 (786)
+++ +. ...+.|+|+ ++.++.++++.. .+. .+. +-+++. + .+.++.+|++ +.+.|
T Consensus 201 ~~~~~~~~~Gad~I~l~DT~G~a~P~~v~~lv~~l~~~~~~~~i~-~H~Hnd~GlA~AN~lAA~~aGa~~vd~sv~GlGe 279 (347)
T PLN02746 201 YVAKELYDMGCYEISLGDTIGVGTPGTVVPMLEAVMAVVPVDKLA-VHFHDTYGQALANILVSLQMGISTVDSSVAGLGG 279 (347)
T ss_pred HHHHHHHHcCCCEEEecCCcCCcCHHHHHHHHHHHHHhCCCCeEE-EEECCCCChHHHHHHHHHHhCCCEEEEecccccC
Confidence 776 33 568999999 666666655422 221 344 444543 2 3557778874 44443
Q ss_pred -------ccccccHHHHHHHHHH
Q psy11975 651 -------LSAVLGGPICELYDLA 666 (786)
Q Consensus 651 -------~aN~~Pel~vaL~eA~ 666 (786)
.+|..-|.++.+++..
T Consensus 280 cPfa~graGN~atE~lv~~L~~~ 302 (347)
T PLN02746 280 CPYAKGASGNVATEDVVYMLNGL 302 (347)
T ss_pred CCCCCCCCCChhHHHHHHHHHhc
Confidence 4555555666655543
No 196
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=65.57 E-value=52 Score=38.19 Aligned_cols=125 Identities=14% Similarity=0.147 Sum_probs=77.9
Q ss_pred EEEeCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHhcC-CCCEEEEeCCCCcCCccCHHHHH
Q psy11975 517 LLKPQKHTTTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNS-PIPVIIYNNTFVTNIDISVDTLV 595 (786)
Q Consensus 517 VIaGVGa~ST~EAIELAr~Ae~aGADAVmViPPyY~kps~S~eeLv~YFraIAeAt-dLPIiLYNiP~~TGv~LSpelL~ 595 (786)
++++..-....+..+.++.+.++|+|.|.+-.-.- +.+.+.+..+.|.+.. ++||+. |.-++++...
T Consensus 213 l~V~aav~~~~~~~~r~~~L~~aG~d~I~vd~a~g-----~~~~~~~~i~~i~~~~~~~~vi~-------G~v~t~~~a~ 280 (450)
T TIGR01302 213 LIVGAAVGTREFDKERAEALVKAGVDVIVIDSSHG-----HSIYVIDSIKEIKKTYPDLDIIA-------GNVATAEQAK 280 (450)
T ss_pred EEEEEEecCchhHHHHHHHHHHhCCCEEEEECCCC-----cHhHHHHHHHHHHHhCCCCCEEE-------EeCCCHHHHH
Confidence 34433332346788899999999999999876442 2455777778887764 799888 5568889888
Q ss_pred HHHhC--CCE-EEE-----EeC---------CHHHHHHHHhhcCCCCEEEEe--CCc--chhhhhhccCCccccccccc
Q psy11975 596 KLAHH--ENI-RGV-----KDT---------DNIKLANMANQTKDLNFSVFA--GSA--GYLLSGLLVGCAGGINALSA 653 (786)
Q Consensus 596 rLAei--PNV-VGI-----KDS---------Dl~ri~~ll~~~~~~df~Vf~--G~D--elLL~aL~~GAdG~Isg~aN 653 (786)
.|.+. +.| +|+ -.+ .+..+.++.+.....++.|+. |-. ..+.-+|++||+.++.|..-
T Consensus 281 ~l~~aGad~i~vg~g~G~~~~t~~~~~~g~p~~~~i~~~~~~~~~~~vpviadGGi~~~~di~kAla~GA~~V~~G~~~ 359 (450)
T TIGR01302 281 ALIDAGADGLRVGIGPGSICTTRIVAGVGVPQITAVYDVAEYAAQSGIPVIADGGIRYSGDIVKALAAGADAVMLGSLL 359 (450)
T ss_pred HHHHhCCCEEEECCCCCcCCccceecCCCccHHHHHHHHHHHHhhcCCeEEEeCCCCCHHHHHHHHHcCCCEEEECchh
Confidence 88753 333 121 011 122223333211223466666 443 24678899999999988753
No 197
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=65.39 E-value=1.3e+02 Score=32.47 Aligned_cols=67 Identities=21% Similarity=0.333 Sum_probs=50.9
Q ss_pred EEEeCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCC----------------CCCCHHHHHHHHHHHHhc-CCCC--EE
Q psy11975 517 LLKPQKHTTTRATIDLTQKAAKAGANAALILCPYYFQ----------------KKMTEDLIYEHFISVADN-SPIP--VI 577 (786)
Q Consensus 517 VIaGVGa~ST~EAIELAr~Ae~aGADAVmViPPyY~k----------------ps~S~eeLv~YFraIAeA-tdLP--Ii 577 (786)
..+-+|..+.+.+++.++...+.|||.+=+--||-.. .+++-+.+++..++|.+. +++| +|
T Consensus 14 ~y~~aG~P~~~~~~~~~~~l~~~Gad~iElGiPfsDP~aDGpvIq~a~~~al~~G~~~~~~~~~v~~ir~~~~~~plv~m 93 (256)
T TIGR00262 14 PFVTAGDPTLETSLEIIKTLIEAGADALELGVPFSDPLADGPTIQAADLRALRAGMTPEKCFELLKKVRQKHPNIPIGLL 93 (256)
T ss_pred EEEeCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCcCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEE
Confidence 3457788999999999999999999999999998321 123456778888888865 5666 44
Q ss_pred EEeCCC
Q psy11975 578 IYNNTF 583 (786)
Q Consensus 578 LYNiP~ 583 (786)
.|-+|-
T Consensus 94 ~Y~Npi 99 (256)
T TIGR00262 94 TYYNLI 99 (256)
T ss_pred EeccHH
Confidence 566663
No 198
>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed
Probab=65.13 E-value=11 Score=40.82 Aligned_cols=82 Identities=16% Similarity=0.175 Sum_probs=51.7
Q ss_pred CCCCCCCccccCCCCeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHhcCCCCEEEEe
Q psy11975 501 VGPRSVRPSEREWQADLLKPQKHTTTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYN 580 (786)
Q Consensus 501 ~~~r~v~veevaGRVPVIaGVGa~ST~EAIELAr~Ae~aGADAVmViPPyY~kps~S~eeLv~YFraIAeAtdLPIiLYN 580 (786)
++||++.. .|...+ .|-.....+++++.|+..+++|||++.+-.+ + . +-.++|.+++++|+|=.-
T Consensus 139 L~pq~~~~---~gg~~i-~grt~~~a~~~i~ra~a~~eAGA~~i~lE~v----~---~----~~~~~i~~~l~iP~igiG 203 (264)
T PRK00311 139 LTPQSVNV---LGGYKV-QGRDEEAAEKLLEDAKALEEAGAFALVLECV----P---A----ELAKEITEALSIPTIGIG 203 (264)
T ss_pred ccceeecc---cCCeee-ecCCHHHHHHHHHHHHHHHHCCCCEEEEcCC----C---H----HHHHHHHHhCCCCEEEec
Confidence 45666542 133333 4444455789999999999999999988753 1 2 345678888889987533
Q ss_pred C-CCCcCCccCHHHHHHH
Q psy11975 581 N-TFVTNIDISVDTLVKL 597 (786)
Q Consensus 581 i-P~~TGv~LSpelL~rL 597 (786)
. |...|.-|=...+.-+
T Consensus 204 aG~~~dgqvlv~~D~lG~ 221 (264)
T PRK00311 204 AGPDCDGQVLVWHDMLGL 221 (264)
T ss_pred cCCCCCceeeeHHhhcCC
Confidence 2 4445554444444333
No 199
>PRK08185 hypothetical protein; Provisional
Probab=64.33 E-value=32 Score=37.87 Aligned_cols=56 Identities=7% Similarity=0.171 Sum_probs=40.3
Q ss_pred HHcCCCEEEE-----cCCCCC--CCCCCHHHHHHHHHHHHhcCCCCEEEEeCCCCcCCccCHHHHHHHHhCC
Q psy11975 537 AKAGANAALI-----LCPYYF--QKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHHE 601 (786)
Q Consensus 537 e~aGADAVmV-----iPPyY~--kps~S~eeLv~YFraIAeAtdLPIiLYNiP~~TGv~LSpelL~rLAeiP 601 (786)
++.|+|++.+ -..|-. +|.++ ++..++|.+++++|+++. -|..++.+.+.+..+..
T Consensus 159 ~~TgvD~LAvaiGt~HG~y~~~~kp~L~----~e~l~~I~~~~~iPLVlH-----Ggsg~~~e~~~~ai~~G 221 (283)
T PRK08185 159 SRTGVDTLAVAIGTAHGIYPKDKKPELQ----MDLLKEINERVDIPLVLH-----GGSANPDAEIAESVQLG 221 (283)
T ss_pred HhhCCCEEEeccCcccCCcCCCCCCCcC----HHHHHHHHHhhCCCEEEE-----CCCCCCHHHHHHHHHCC
Confidence 3459999988 444433 35433 778888988899999887 35567888888887653
No 200
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=63.85 E-value=59 Score=34.15 Aligned_cols=132 Identities=17% Similarity=0.147 Sum_probs=77.1
Q ss_pred EEEeCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHhcCCCCEEEEeCCCCcCCccCHHHHHH
Q psy11975 517 LLKPQKHTTTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVK 596 (786)
Q Consensus 517 VIaGVGa~ST~EAIELAr~Ae~aGADAVmViPPyY~kps~S~eeLv~YFraIAeAtdLPIiLYNiP~~TGv~LSpelL~r 596 (786)
+++|+|.--+.+. ++.|.++||+.+ +.|.+ +.+++++.++ .++|++ | |. +++..+.+
T Consensus 60 ~~vGAGTVl~~~~---a~~a~~aGA~Fi--vsP~~------~~~v~~~~~~----~~i~~i----P---G~-~TptEi~~ 116 (204)
T TIGR01182 60 ALIGAGTVLNPEQ---LRQAVDAGAQFI--VSPGL------TPELAKHAQD----HGIPII----P---GV-ATPSEIML 116 (204)
T ss_pred CEEEEEeCCCHHH---HHHHHHcCCCEE--ECCCC------CHHHHHHHHH----cCCcEE----C---CC-CCHHHHHH
Confidence 7788887655544 677888999987 44543 4567776553 345543 3 54 56655555
Q ss_pred HHhCCCEEEEEeC--C----HHHHHHHHhhcCCCCEEEE--eCCcc-hhhhhhccCCccccccccccccHHHHHHHHHHH
Q psy11975 597 LAHHENIRGVKDT--D----NIKLANMANQTKDLNFSVF--AGSAG-YLLSGLLVGCAGGINALSAVLGGPICELYDLAK 667 (786)
Q Consensus 597 LAeiPNVVGIKDS--D----l~ri~~ll~~~~~~df~Vf--~G~De-lLL~aL~~GAdG~Isg~aN~~Pel~vaL~eA~~ 667 (786)
..+. ..--+|.= + ...+..+.. .-+++.++ .|-+. .+-+.|.+|+.++..|. +++++. +..
T Consensus 117 A~~~-Ga~~vKlFPA~~~GG~~yikal~~--plp~i~~~ptGGV~~~N~~~~l~aGa~~vg~Gs-~L~~~~------~~~ 186 (204)
T TIGR01182 117 ALEL-GITALKLFPAEVSGGVKMLKALAG--PFPQVRFCPTGGINLANVRDYLAAPNVACGGGS-WLVPKD------LIA 186 (204)
T ss_pred HHHC-CCCEEEECCchhcCCHHHHHHHhc--cCCCCcEEecCCCCHHHHHHHHhCCCEEEEECh-hhcCch------hhc
Confidence 4433 23445555 2 455555543 23555544 34432 46778889999887775 455532 346
Q ss_pred cCCHHHHHHHHHHh
Q psy11975 668 AGKWEEAMKLQHRL 681 (786)
Q Consensus 668 aGD~eeAreLQ~rL 681 (786)
++|+++..+.-+++
T Consensus 187 ~~~~~~i~~~a~~~ 200 (204)
T TIGR01182 187 AGDWDEITRLAREA 200 (204)
T ss_pred cccHHHHHHHHHHH
Confidence 67777665544433
No 201
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=63.84 E-value=38 Score=40.02 Aligned_cols=131 Identities=15% Similarity=0.121 Sum_probs=81.6
Q ss_pred CCCCeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHhcC-CCCEEEEeCCCCcCCccC
Q psy11975 512 EWQADLLKPQKHTTTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNS-PIPVIIYNNTFVTNIDIS 590 (786)
Q Consensus 512 aGRVPVIaGVGa~ST~EAIELAr~Ae~aGADAVmViPPyY~kps~S~eeLv~YFraIAeAt-dLPIiLYNiP~~TGv~LS 590 (786)
.||+-|=+.||. ..+..+.++...++|+|.|.+=.+.- ....+++..+.|-+.. +++||.=|+ .+
T Consensus 234 ~~~l~vgaavg~--~~~~~~r~~~l~~ag~d~i~iD~~~g-----~~~~~~~~i~~ik~~~p~~~vi~g~v-------~t 299 (505)
T PLN02274 234 DGKLLVGAAIGT--RESDKERLEHLVKAGVDVVVLDSSQG-----DSIYQLEMIKYIKKTYPELDVIGGNV-------VT 299 (505)
T ss_pred CCCEEEEEEEcC--CccHHHHHHHHHHcCCCEEEEeCCCC-----CcHHHHHHHHHHHHhCCCCcEEEecC-------CC
Confidence 455555444443 36778999999999999999887642 2345667777777766 588887775 45
Q ss_pred HHHHHHHHh--CCCE-EEE--------Ee------C---CHHHHHHHHhhcCCCCEEEEe-CC---cchhhhhhccCCcc
Q psy11975 591 VDTLVKLAH--HENI-RGV--------KD------T---DNIKLANMANQTKDLNFSVFA-GS---AGYLLSGLLVGCAG 646 (786)
Q Consensus 591 pelL~rLAe--iPNV-VGI--------KD------S---Dl~ri~~ll~~~~~~df~Vf~-G~---DelLL~aL~~GAdG 646 (786)
.+...++.+ .+.| +|+ +. . ++..+.++.+. .++.|+. |. .+.+..+|++||++
T Consensus 300 ~e~a~~a~~aGaD~i~vg~g~G~~~~t~~~~~~g~~~~~~i~~~~~~~~~---~~vpVIadGGI~~~~di~kAla~GA~~ 376 (505)
T PLN02274 300 MYQAQNLIQAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVASIAAQ---HGVPVIADGGISNSGHIVKALTLGAST 376 (505)
T ss_pred HHHHHHHHHcCcCEEEECCCCCccccCccccccCCCcccHHHHHHHHHHh---cCCeEEEeCCCCCHHHHHHHHHcCCCE
Confidence 677777664 3333 121 10 0 33445555442 2344443 32 13477899999999
Q ss_pred ccccccccccHHH
Q psy11975 647 GINALSAVLGGPI 659 (786)
Q Consensus 647 ~Isg~aN~~Pel~ 659 (786)
++.|..-..+++.
T Consensus 377 V~vGs~~~~t~Es 389 (505)
T PLN02274 377 VMMGSFLAGTTEA 389 (505)
T ss_pred EEEchhhcccccC
Confidence 9999875555433
No 202
>TIGR02082 metH 5-methyltetrahydrofolate--homocysteine methyltransferase. S-methyltransferase (MetE, EC 2.1.1.14, the cobalamin-independent methionine synthase) and betaine-homocysteine methyltransferase.
Probab=62.37 E-value=2.8e+02 Score=36.58 Aligned_cols=154 Identities=16% Similarity=0.127 Sum_probs=93.2
Q ss_pred CCCeEEEe-C---------CCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHhcCCCCEEEEeCC
Q psy11975 513 WQADLLKP-Q---------KHTTTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNT 582 (786)
Q Consensus 513 GRVPVIaG-V---------Ga~ST~EAIELAr~Ae~aGADAVmViPPyY~kps~S~eeLv~YFraIAeAtdLPIiLYNiP 582 (786)
-++||++. + .+.++++++... +.+|+++|.+-. ..+ ++.+..+.+.++..++.||++|-|-
T Consensus 192 ~~lPv~vS~~~~d~~Gr~~~G~~~~~~~~~l---~~~~~~avGlNC----s~g--P~~m~~~l~~l~~~~~~pi~vyPNA 262 (1178)
T TIGR02082 192 RELPIMISGTIVDTSGRTLSGQTIEAFLTSL---EHAGIDMIGLNC----ALG--PDEMRPHLKHLSEHAEAYVSCHPNA 262 (1178)
T ss_pred CCCeEEEEEEEECCCCeeCCCCcHHHHHHHH---hcCCCCEEEeCC----CCC--HHHHHHHHHHHHHhcCceEEEEeCC
Confidence 36788887 2 224455555444 467899877753 122 7899999999999999999999774
Q ss_pred CC----cCCccCHHHHHHHH----hC--CCEEEEEeC-CHHHHHHHHhhcC--CCC-------EEEEeCCcchhhhhhcc
Q psy11975 583 FV----TNIDISVDTLVKLA----HH--ENIRGVKDT-DNIKLANMANQTK--DLN-------FSVFAGSAGYLLSGLLV 642 (786)
Q Consensus 583 ~~----TGv~LSpelL~rLA----ei--PNVVGIKDS-Dl~ri~~ll~~~~--~~d-------f~Vf~G~DelLL~aL~~ 642 (786)
+. ..++.+|+.+.+.+ +. -||+|=-.. .+++++++.+... .++ ..+.+|.... ..
T Consensus 263 GlP~~~~~yd~~p~~~a~~~~~~~~~ggv~IIGGCCGTtPeHI~ala~~l~~~~p~~~~~~~~~~~~s~~~~~-----~~ 337 (1178)
T TIGR02082 263 GLPNAFGEYDLTPDELAKALADFAAEGGLNIVGGCCGTTPDHIRAIAEAVKNIKPRQRPVLYEPSRLSGLEAI-----TI 337 (1178)
T ss_pred CCCCCCCcccCCHHHHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHhhcCCCCCCCCcccceeecCceEE-----ee
Confidence 32 24567887776664 32 578876666 8888777655321 111 1133333322 22
Q ss_pred CCc-cccccccccccHHHHHHHHHHHcCCHHHHHHHHHH
Q psy11975 643 GCA-GGINALSAVLGGPICELYDLAKAGKWEEAMKLQHR 680 (786)
Q Consensus 643 GAd-G~Isg~aN~~Pel~vaL~eA~~aGD~eeAreLQ~r 680 (786)
+.+ .++...--+.|--...+.++++++|+++|.+.-.+
T Consensus 338 ~~~~~~~~IGEr~N~~G~k~~~~~i~~~d~~~a~~~A~~ 376 (1178)
T TIGR02082 338 AQDSNFVNIGERTNVAGSKKFRRLIIAEDYDEALDIAKQ 376 (1178)
T ss_pred cCCCceEEEeeccchhhhHHHHHHHHcCCHHHHHHHHHH
Confidence 222 12222222333445778889999998887665433
No 203
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=62.28 E-value=24 Score=37.72 Aligned_cols=35 Identities=20% Similarity=0.258 Sum_probs=29.4
Q ss_pred CCeEEEeCCC-CCHHHHHHHHHHHHHcCCCEEEEcC
Q psy11975 514 QADLLKPQKH-TTTRATIDLTQKAAKAGANAALILC 548 (786)
Q Consensus 514 RVPVIaGVGa-~ST~EAIELAr~Ae~aGADAVmViP 548 (786)
++||++.++. .+.++.+++++.++++|||++.+..
T Consensus 162 ~~pv~vKl~~~~~~~~~~~~a~~l~~~Gad~i~~~~ 197 (289)
T cd02810 162 DIPLLVKLSPYFDLEDIVELAKAAERAGADGLTAIN 197 (289)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEEc
Confidence 5789997775 4566899999999999999999864
No 204
>PRK07226 fructose-bisphosphate aldolase; Provisional
Probab=62.13 E-value=19 Score=38.65 Aligned_cols=54 Identities=17% Similarity=0.230 Sum_probs=43.2
Q ss_pred CCeEEE--eCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHH
Q psy11975 514 QADLLK--PQKHTTTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVA 569 (786)
Q Consensus 514 RVPVIa--GVGa~ST~EAIELAr~Ae~aGADAVmViPPyY~kps~S~eeLv~YFraIA 569 (786)
++||++ |+...+.++++++++.+.++||+++.+..-.+..++ .++..+-+..+.
T Consensus 196 ~ipV~a~GGi~~~~~~~~l~~v~~~~~aGA~Gis~gr~i~~~~~--p~~~~~~l~~~v 251 (267)
T PRK07226 196 PVPVVIAGGPKTDTDREFLEMVRDAMEAGAAGVAVGRNVFQHED--PEAITRAISAVV 251 (267)
T ss_pred CCCEEEEeCCCCCCHHHHHHHHHHHHHcCCcEEehhhhhhcCCC--HHHHHHHHHHHH
Confidence 678766 666557899999999999999999999988877665 777776666655
No 205
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=62.04 E-value=24 Score=38.13 Aligned_cols=86 Identities=16% Similarity=0.251 Sum_probs=48.4
Q ss_pred CCCCCHHHHHHHHHhCCCCCccCCCccccccCCCCCCCCCCCCCccccCCCCeEEEeCCCCC--------HHHHHHHHHH
Q psy11975 464 STSMPIQKRKSLLRKFPLWPELEPSTSELKRSDRPMSVGPRSVRPSEREWQADLLKPQKHTT--------TRATIDLTQK 535 (786)
Q Consensus 464 ~~sLT~dER~~Lle~~~~wve~~a~~~e~~~~~~~~~~~~r~v~veevaGRVPVIaGVGa~S--------T~EAIELAr~ 535 (786)
+..|+.++|.++++. ..+ ..+.|+.-||.-. +.+-|++++.
T Consensus 107 ti~l~~~~r~~~I~~---~~~----------------------------~Gf~v~~EvG~K~~~~~~~~~~~~~i~~~~~ 155 (244)
T PF02679_consen 107 TIDLPEEERLRLIRK---AKE----------------------------EGFKVLSEVGKKDPESDFSLDPEELIEQAKR 155 (244)
T ss_dssp SS---HHHHHHHHHH---HCC----------------------------TTSEEEEEES-SSHHHHTT--CCHHHHHHHH
T ss_pred ceeCCHHHHHHHHHH---HHH----------------------------CCCEEeecccCCCchhcccCCHHHHHHHHHH
Confidence 478999999999998 322 2355776666433 5577889999
Q ss_pred HHHcCCCEEEEcCC------CCCCCCCCHHHHHHHHHHHHhcCCCCEEEEeCCC
Q psy11975 536 AAKAGANAALILCP------YYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTF 583 (786)
Q Consensus 536 Ae~aGADAVmViPP------yY~kps~S~eeLv~YFraIAeAtdLPIiLYNiP~ 583 (786)
..++||+.||+=.= .|-.- .+--.+...+|+++.++--+++..|.
T Consensus 156 dLeAGA~~ViiEarEsG~~Gi~~~~---g~~r~d~v~~i~~~~~~~~lifEAp~ 206 (244)
T PF02679_consen 156 DLEAGADKVIIEARESGKGGIYDND---GEVRTDLVEKIIERLGLEKLIFEAPQ 206 (244)
T ss_dssp HHHHTECEEEE--TTT--STTB-TT---S-B-HHHHHHHHTTS-GGGEEEE--S
T ss_pred HHHCCCCEEEEeeeccCCCCccCCC---CCccHHHHHHHHHhCCHhHEEEeCCC
Confidence 99999999999764 22211 12223444555555555555666554
No 206
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=62.00 E-value=39 Score=33.05 Aligned_cols=78 Identities=13% Similarity=0.098 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHHcCCCEEEEcCC---CCCCCC--CCHHHHHHHHHHHHhcC---CCCEEEEeCCCCcC-CccCHHHHHH
Q psy11975 526 TRATIDLTQKAAKAGANAALILCP---YYFQKK--MTEDLIYEHFISVADNS---PIPVIIYNNTFVTN-IDISVDTLVK 596 (786)
Q Consensus 526 T~EAIELAr~Ae~aGADAVmViPP---yY~kps--~S~eeLv~YFraIAeAt---dLPIiLYNiP~~TG-v~LSpelL~r 596 (786)
.+...+.++.|+.+|+..+.+.++ ...... ...+.+++.++.+++.+ ++-|.+.|.|.... ...+.+.+.+
T Consensus 70 ~~~~~~~i~~a~~lg~~~i~~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~~~~~~~~~~~~~~~ 149 (213)
T PF01261_consen 70 LEYLKKAIDLAKRLGAKYIVVHSGRYPSGPEDDTEENWERLAENLRELAEIAEEYGVRIALENHPGPFSETPFSVEEIYR 149 (213)
T ss_dssp HHHHHHHHHHHHHHTBSEEEEECTTESSSTTSSHHHHHHHHHHHHHHHHHHHHHHTSEEEEE-SSSSSSSEESSHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCceeecCcccccccCCCHHHHHHHHHHHHHHHHhhhhhhcceEEEecccCccccchhhHHHHHH
Confidence 677788888999999999999977 332222 12445677777777766 89999999987654 2334577777
Q ss_pred HH---hCCCE
Q psy11975 597 LA---HHENI 603 (786)
Q Consensus 597 LA---eiPNV 603 (786)
|. ..|||
T Consensus 150 ~l~~~~~~~~ 159 (213)
T PF01261_consen 150 LLEEVDSPNV 159 (213)
T ss_dssp HHHHHTTTTE
T ss_pred HHhhcCCCcc
Confidence 76 35773
No 207
>PRK02615 thiamine-phosphate pyrophosphorylase; Provisional
Probab=61.16 E-value=36 Score=38.46 Aligned_cols=71 Identities=15% Similarity=0.122 Sum_probs=48.3
Q ss_pred EEEeCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCC--CCCCCHHHHHHHHHHHHhcCCCCEEEEeCCCCcCCccCHHHH
Q psy11975 517 LLKPQKHTTTRATIDLTQKAAKAGANAALILCPYYF--QKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTL 594 (786)
Q Consensus 517 VIaGVGa~ST~EAIELAr~Ae~aGADAVmViPPyY~--kps~S~eeLv~YFraIAeAtdLPIiLYNiP~~TGv~LSpelL 594 (786)
-|+|+++.+.++ ++.|.+.|||.|.+.|-|.. ++....- -.++++.+++.+++|++..- | |+++.+
T Consensus 241 ~iIG~S~Hs~~e----~~~A~~~GaDYI~lGPvf~T~tKp~~~~~-Gle~l~~~~~~~~iPv~AiG-----G--I~~~ni 308 (347)
T PRK02615 241 KIIGRSTTNPEE----MAKAIAEGADYIGVGPVFPTPTKPGKAPA-GLEYLKYAAKEAPIPWFAIG-----G--IDKSNI 308 (347)
T ss_pred CEEEEecCCHHH----HHHHHHcCCCEEEECCCcCCCCCCCCCCC-CHHHHHHHHHhCCCCEEEEC-----C--CCHHHH
Confidence 367888887655 46677889999988864432 2221111 26888888888889987652 3 568888
Q ss_pred HHHHh
Q psy11975 595 VKLAH 599 (786)
Q Consensus 595 ~rLAe 599 (786)
.++.+
T Consensus 309 ~~l~~ 313 (347)
T PRK02615 309 PEVLQ 313 (347)
T ss_pred HHHHH
Confidence 88764
No 208
>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=60.38 E-value=1.9e+02 Score=32.96 Aligned_cols=62 Identities=15% Similarity=0.203 Sum_probs=46.4
Q ss_pred CeEEEeCC-CCCHHHHHHHHHHHHHcCCCEEEE------cCCCCCCCCCCHHHHHHHHHHHHhcCCCCEEE
Q psy11975 515 ADLLKPQK-HTTTRATIDLTQKAAKAGANAALI------LCPYYFQKKMTEDLIYEHFISVADNSPIPVII 578 (786)
Q Consensus 515 VPVIaGVG-a~ST~EAIELAr~Ae~aGADAVmV------iPPyY~kps~S~eeLv~YFraIAeAtdLPIiL 578 (786)
+-||+|=. -.+.+.+++.|+..+++|+..+-- ..||-|.-- .++-+++++++++.+++|++-
T Consensus 102 l~vIAGPCsIEs~eq~l~~A~~lk~~g~~~~r~g~~kpRtsp~sf~G~--g~~gl~~L~~~~~e~Gl~~~t 170 (352)
T PRK13396 102 VVVVAGPCSVENEEMIVETAKRVKAAGAKFLRGGAYKPRTSPYAFQGH--GESALELLAAAREATGLGIIT 170 (352)
T ss_pred EEEEEeCCcccCHHHHHHHHHHHHHcCCCEEEeeeecCCCCCcccCCc--hHHHHHHHHHHHHHcCCcEEE
Confidence 45788644 367888999999999999886552 345555432 366788999999999999884
No 209
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=60.26 E-value=53 Score=34.29 Aligned_cols=128 Identities=19% Similarity=0.174 Sum_probs=75.0
Q ss_pred EEEeCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHhcCCCCEEEEeCCCCcCCccCHHHHHH
Q psy11975 517 LLKPQKHTTTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVK 596 (786)
Q Consensus 517 VIaGVGa~ST~EAIELAr~Ae~aGADAVmViPPyY~kps~S~eeLv~YFraIAeAtdLPIiLYNiP~~TGv~LSpelL~r 596 (786)
+++|+|.--+ .+.++.|.++||+.++. |.+ +++++++.++- ++|++ |+ -++|..+.+
T Consensus 60 ~~vGAGTV~~---~e~a~~a~~aGA~FivS--P~~------~~~v~~~~~~~----~i~~i----PG----~~TptEi~~ 116 (196)
T PF01081_consen 60 LLVGAGTVLT---AEQAEAAIAAGAQFIVS--PGF------DPEVIEYAREY----GIPYI----PG----VMTPTEIMQ 116 (196)
T ss_dssp SEEEEES--S---HHHHHHHHHHT-SEEEE--SS--------HHHHHHHHHH----TSEEE----EE----ESSHHHHHH
T ss_pred CeeEEEeccC---HHHHHHHHHcCCCEEEC--CCC------CHHHHHHHHHc----CCccc----CC----cCCHHHHHH
Confidence 6778887444 45777888899997654 332 57788887753 45443 43 367777766
Q ss_pred HHhCCCEEEEEeC-----C-HHHHHHHHhhcCCCCEEEEe--CCc-chhhhhhccCCccccccccccccHHHHHHHHHHH
Q psy11975 597 LAHHENIRGVKDT-----D-NIKLANMANQTKDLNFSVFA--GSA-GYLLSGLLVGCAGGINALSAVLGGPICELYDLAK 667 (786)
Q Consensus 597 LAeiPNVVGIKDS-----D-l~ri~~ll~~~~~~df~Vf~--G~D-elLL~aL~~GAdG~Isg~aN~~Pel~vaL~eA~~ 667 (786)
..+. ...-+|.= . +..+..+.. .-+++.++. |-+ +.+-+.|.+|+.++..|. +++++. +++
T Consensus 117 A~~~-G~~~vK~FPA~~~GG~~~ik~l~~--p~p~~~~~ptGGV~~~N~~~~l~ag~~~vg~Gs-~L~~~~------~i~ 186 (196)
T PF01081_consen 117 ALEA-GADIVKLFPAGALGGPSYIKALRG--PFPDLPFMPTGGVNPDNLAEYLKAGAVAVGGGS-WLFPKD------LIA 186 (196)
T ss_dssp HHHT-T-SEEEETTTTTTTHHHHHHHHHT--TTTT-EEEEBSS--TTTHHHHHTSTTBSEEEES-GGGSHH------HHH
T ss_pred HHHC-CCCEEEEecchhcCcHHHHHHHhc--cCCCCeEEEcCCCCHHHHHHHHhCCCEEEEECc-hhcCHH------HHh
Confidence 6554 44567766 2 566665543 345666543 333 346778899998877665 466653 346
Q ss_pred cCCHHHHHHH
Q psy11975 668 AGKWEEAMKL 677 (786)
Q Consensus 668 aGD~eeAreL 677 (786)
++|+++..+|
T Consensus 187 ~~~~~~I~~l 196 (196)
T PF01081_consen 187 AGDWDEITRL 196 (196)
T ss_dssp TT-HHHHHHH
T ss_pred cCCHHHHhcC
Confidence 7888876553
No 210
>PRK06512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=60.16 E-value=41 Score=35.47 Aligned_cols=70 Identities=9% Similarity=0.004 Sum_probs=44.5
Q ss_pred EEEeCC-CCCHHHHHHHHHHHHHcCCCEEEEcCCCCC--CCCCCHHHHHHHHHHHHhcCCCCEEEEeCCCCcCCccCHHH
Q psy11975 517 LLKPQK-HTTTRATIDLTQKAAKAGANAALILCPYYF--QKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDT 593 (786)
Q Consensus 517 VIaGVG-a~ST~EAIELAr~Ae~aGADAVmViPPyY~--kps~S~eeLv~YFraIAeAtdLPIiLYNiP~~TGv~LSpel 593 (786)
.|+|++ +.+..++.+ |++.|||.+.+-|- |. ++. ....-.+.++.+++.+++||+.-- | |+++.
T Consensus 111 ~iiG~s~~~s~~~a~~----A~~~gaDYv~~Gpv-~t~tK~~-~~p~gl~~l~~~~~~~~iPvvAIG-----G--I~~~n 177 (221)
T PRK06512 111 MIVGFGNLRDRHGAME----IGELRPDYLFFGKL-GADNKPE-AHPRNLSLAEWWAEMIEIPCIVQA-----G--SDLAS 177 (221)
T ss_pred CEEEecCCCCHHHHHH----hhhcCCCEEEECCC-CCCCCCC-CCCCChHHHHHHHHhCCCCEEEEe-----C--CCHHH
Confidence 467887 455555443 67899999999863 31 221 111124456667777889987653 3 67888
Q ss_pred HHHHHh
Q psy11975 594 LVKLAH 599 (786)
Q Consensus 594 L~rLAe 599 (786)
+.++.+
T Consensus 178 ~~~~~~ 183 (221)
T PRK06512 178 AVEVAE 183 (221)
T ss_pred HHHHHH
Confidence 888864
No 211
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=60.12 E-value=1.3e+02 Score=31.86 Aligned_cols=113 Identities=12% Similarity=0.089 Sum_probs=73.7
Q ss_pred eEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHhcCCCCEEEEeCCCCcCCccCHHHHH
Q psy11975 516 DLLKPQKHTTTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLV 595 (786)
Q Consensus 516 PVIaGVGa~ST~EAIELAr~Ae~aGADAVmViPPyY~kps~S~eeLv~YFraIAeAtdLPIiLYNiP~~TGv~LSpelL~ 595 (786)
-|.+++-++ ....+..+...++|+.+-+++.|.- + .+.+ .+| .+.++.=+++=-.|+..|..+-++.+.
T Consensus 88 ~I~~H~Ea~--~~~~~~l~~Ir~~g~k~GlalnP~T--~---~~~i-~~~---l~~vD~VlvMtV~PGf~GQ~fi~~~l~ 156 (223)
T PRK08745 88 TISFHPEAS--RHVHRTIQLIKSHGCQAGLVLNPAT--P---VDIL-DWV---LPELDLVLVMSVNPGFGGQAFIPSALD 156 (223)
T ss_pred EEEEcccCc--ccHHHHHHHHHHCCCceeEEeCCCC--C---HHHH-HHH---HhhcCEEEEEEECCCCCCccccHHHHH
Confidence 356676643 4455666777888999999998852 1 3333 333 445666677777899999999999998
Q ss_pred HHHhCCCEEEEEeCCHHHHHHHHhhcCCCC--EEEEeCCc-chhhhhhccCCcccccccccc
Q psy11975 596 KLAHHENIRGVKDTDNIKLANMANQTKDLN--FSVFAGSA-GYLLSGLLVGCAGGINALSAV 654 (786)
Q Consensus 596 rLAeiPNVVGIKDSDl~ri~~ll~~~~~~d--f~Vf~G~D-elLL~aL~~GAdG~Isg~aN~ 654 (786)
++. ++++++.+ .+.+ +.|=.|-. +.+-....+|++.+|.|.+-|
T Consensus 157 KI~--------------~l~~~~~~-~~~~~~IeVDGGI~~eti~~l~~aGaDi~V~GSaiF 203 (223)
T PRK08745 157 KLR--------------AIRKKIDA-LGKPIRLEIDGGVKADNIGAIAAAGADTFVAGSAIF 203 (223)
T ss_pred HHH--------------HHHHHHHh-cCCCeeEEEECCCCHHHHHHHHHcCCCEEEEChhhh
Confidence 884 44555442 2333 34434444 345566789999999997633
No 212
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=60.12 E-value=1.1e+02 Score=32.91 Aligned_cols=114 Identities=17% Similarity=0.117 Sum_probs=75.2
Q ss_pred EEEeCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHhcCCCCEEEEeCCCCcCCccCHHHHHH
Q psy11975 517 LLKPQKHTTTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVK 596 (786)
Q Consensus 517 VIaGVGa~ST~EAIELAr~Ae~aGADAVmViPPyY~kps~S~eeLv~YFraIAeAtdLPIiLYNiP~~TGv~LSpelL~r 596 (786)
|-+++- .+...-+..+...+.|+.+-+++.|- |+ ++.++.+.+.+++=++.=-+|+..|..+-++.+.+
T Consensus 88 It~H~E--~~~~~~r~i~~Ik~~G~kaGv~lnP~------Tp---~~~i~~~l~~vD~VllMsVnPGfgGQ~Fi~~~l~K 156 (220)
T COG0036 88 ITFHAE--ATEHIHRTIQLIKELGVKAGLVLNPA------TP---LEALEPVLDDVDLVLLMSVNPGFGGQKFIPEVLEK 156 (220)
T ss_pred EEEEec--cCcCHHHHHHHHHHcCCeEEEEECCC------CC---HHHHHHHHhhCCEEEEEeECCCCcccccCHHHHHH
Confidence 445665 44555666666777899999999875 23 34455556667777888889999999999999999
Q ss_pred HHhCCCEEEEEeCCHHHHHHHHhhcCC-CCEEEEeCCcc-hhhhhhccCCcccccccccccc
Q psy11975 597 LAHHENIRGVKDTDNIKLANMANQTKD-LNFSVFAGSAG-YLLSGLLVGCAGGINALSAVLG 656 (786)
Q Consensus 597 LAeiPNVVGIKDSDl~ri~~ll~~~~~-~df~Vf~G~De-lLL~aL~~GAdG~Isg~aN~~P 656 (786)
|. ++++++.. .+ -.+.|=.|-+. ..-....+|++=++.|.+-|-.
T Consensus 157 i~--------------~lr~~~~~-~~~~~IeVDGGI~~~t~~~~~~AGad~~VaGSalF~~ 203 (220)
T COG0036 157 IR--------------ELRAMIDE-RLDILIEVDGGINLETIKQLAAAGADVFVAGSALFGA 203 (220)
T ss_pred HH--------------HHHHHhcc-cCCeEEEEeCCcCHHHHHHHHHcCCCEEEEEEEEeCC
Confidence 84 34444442 11 12333334333 3444556899999988865533
No 213
>TIGR00587 nfo apurinic endonuclease (APN1). All proteins in this family for which functions are known are 5' AP endonculeases that are used in base excision repair and the repair of abasic sites in DNA.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=59.54 E-value=58 Score=34.88 Aligned_cols=82 Identities=12% Similarity=0.041 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHH----HHHHHHHHHhcC-CCCEEEEeCCCCcC-CccCHHHHHHHHh
Q psy11975 526 TRATIDLTQKAAKAGANAALILCPYYFQKKMTEDL----IYEHFISVADNS-PIPVIIYNNTFVTN-IDISVDTLVKLAH 599 (786)
Q Consensus 526 T~EAIELAr~Ae~aGADAVmViPPyY~kps~S~ee----Lv~YFraIAeAt-dLPIiLYNiP~~TG-v~LSpelL~rLAe 599 (786)
.+...+.++.|+++||+.|.+.|.++.... .++ +.+.++.|.+.. +++|.+=|.|+... ..-+++.+.+|.+
T Consensus 87 v~~~~~~i~~A~~lga~~vv~H~G~~~~~~--~e~~~~~~~~~l~~l~~~~~~v~l~lEN~~~~~~~l~~~~~el~~ll~ 164 (274)
T TIGR00587 87 LDVLDEELKRCELLGIMLYNFHPGSALKCS--EEEGLDNLIESLNVVIKETKIVTILLENMAGQGSELGRSFEELAYIIK 164 (274)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCCCCCCCC--HHHHHHHHHHHHHHHHhccCCCEEEEEeCCCCCCccCCCHHHHHHHHH
Confidence 455566778888999998888877654322 333 344455555443 58999999886532 2237888888873
Q ss_pred -C---CCEEEEEeC
Q psy11975 600 -H---ENIRGVKDT 609 (786)
Q Consensus 600 -i---PNVVGIKDS 609 (786)
+ |++.-+=|+
T Consensus 165 ~~~~~~~lg~~lDt 178 (274)
T TIGR00587 165 VIVDKRRIGVCLDT 178 (274)
T ss_pred hcCCCCceEEEEEh
Confidence 3 555444444
No 214
>PRK05664 threonine-phosphate decarboxylase; Reviewed
Probab=59.20 E-value=1.8e+02 Score=31.63 Aligned_cols=83 Identities=18% Similarity=0.177 Sum_probs=51.2
Q ss_pred eEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHH------------HHHHHHhcCCCCEEEEeCCC
Q psy11975 516 DLLKPQKHTTTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYE------------HFISVADNSPIPVIIYNNTF 583 (786)
Q Consensus 516 PVIaGVGa~ST~EAIELAr~Ae~aGADAVmViPPyY~kps~S~eeLv~------------YFraIAeAtdLPIiLYNiP~ 583 (786)
-|+++.|+ .+++.++-.+ .-| |.|++..|.|.... .+.+ -++...+ ...++++++|.
T Consensus 66 ~I~it~Gs---~~al~~~~~~-~~g-d~v~v~~P~y~~~~----~~~~~~g~~~~~v~~~~~~~~~~--~~~~v~l~nP~ 134 (330)
T PRK05664 66 QLLPVAGS---QAAIQALPRL-RAP-GRVGVLSPCYAEHA----HAWRRAGHQVRELDEAEVEAALD--SLDVLVVVNPN 134 (330)
T ss_pred CEEECcCH---HHHHHHHHHc-cCC-CEEEEcCCChHHHH----HHHHHcCCeEEEechhhHhhhhc--CCCEEEEeCCc
Confidence 37776554 7778777543 334 78999999874321 1111 1122222 34578888887
Q ss_pred C-cCCccCHHHHHHHHh---CCCEEEEEeC
Q psy11975 584 V-TNIDISVDTLVKLAH---HENIRGVKDT 609 (786)
Q Consensus 584 ~-TGv~LSpelL~rLAe---iPNVVGIKDS 609 (786)
. ||..++.+.+.+|++ --++.=|=|+
T Consensus 135 NPTG~~~s~~~l~~l~~~~~~~~~~iI~DE 164 (330)
T PRK05664 135 NPTGRRFDPARLLAWHARLAARGGWLVVDE 164 (330)
T ss_pred CCCCCccCHHHHHHHHHHHHhcCCEEEEEC
Confidence 5 899999999999863 2345555566
No 215
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=58.92 E-value=81 Score=36.01 Aligned_cols=118 Identities=17% Similarity=0.164 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHHHcCCCEEEEcCC----CCCCCCCCHHHHHHHHHHHHhcCCCCEEEEeCCCCcCCccCHHHHHHHHh--
Q psy11975 526 TRATIDLTQKAAKAGANAALILCP----YYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAH-- 599 (786)
Q Consensus 526 T~EAIELAr~Ae~aGADAVmViPP----yY~kps~S~eeLv~YFraIAeAtdLPIiLYNiP~~TGv~LSpelL~rLAe-- 599 (786)
..++.++++.++++|||.+.+..- .|.......+.+.++. +..++||+. |.-.+.+...++.+
T Consensus 141 ~~~~~e~a~~l~eAGad~I~ihgrt~~q~~~sg~~~p~~l~~~i----~~~~IPVI~-------G~V~t~e~A~~~~~aG 209 (369)
T TIGR01304 141 PQNAREIAPIVVKAGADLLVIQGTLVSAEHVSTSGEPLNLKEFI----GELDVPVIA-------GGVNDYTTALHLMRTG 209 (369)
T ss_pred CcCHHHHHHHHHHCCCCEEEEeccchhhhccCCCCCHHHHHHHH----HHCCCCEEE-------eCCCCHHHHHHHHHcC
Confidence 358899999999999999998642 2322211244444443 446899986 33466777777775
Q ss_pred CCCEE-E---EEeC---------CHHHHHHHHhh------cCC-CCEEEEeCCc----chhhhhhccCCcccccccccc
Q psy11975 600 HENIR-G---VKDT---------DNIKLANMANQ------TKD-LNFSVFAGSA----GYLLSGLLVGCAGGINALSAV 654 (786)
Q Consensus 600 iPNVV-G---IKDS---------Dl~ri~~ll~~------~~~-~df~Vf~G~D----elLL~aL~~GAdG~Isg~aN~ 654 (786)
.+.|. | ...+ ....+.++... ..+ ..+.|+.... +.+..++++|+++++.|..-.
T Consensus 210 aDgV~~G~gg~~~~~~~lg~~~p~~~ai~d~~~a~~~~~~e~g~r~vpVIAdGGI~tg~di~kAlAlGAdaV~iGt~~a 288 (369)
T TIGR01304 210 AAGVIVGPGGANTTRLVLGIEVPMATAIADVAAARRDYLDETGGRYVHVIADGGIETSGDLVKAIACGADAVVLGSPLA 288 (369)
T ss_pred CCEEEECCCCCcccccccCCCCCHHHHHHHHHHHHHHHHHhcCCCCceEEEeCCCCCHHHHHHHHHcCCCEeeeHHHHH
Confidence 33443 1 0011 11122332210 112 2355443322 347788999999999997543
No 216
>PRK09261 phospho-2-dehydro-3-deoxyheptonate aldolase; Validated
Probab=58.82 E-value=1.4e+02 Score=34.02 Aligned_cols=104 Identities=10% Similarity=0.036 Sum_probs=68.7
Q ss_pred CCCCeEEEe-CCCCCHHHHHHHHHHHHHcCCC----EEEEcCCCCCCCCCC-----------------HHHHHHHHHHH-
Q psy11975 512 EWQADLLKP-QKHTTTRATIDLTQKAAKAGAN----AALILCPYYFQKKMT-----------------EDLIYEHFISV- 568 (786)
Q Consensus 512 aGRVPVIaG-VGa~ST~EAIELAr~Ae~aGAD----AVmViPPyY~kps~S-----------------~eeLv~YFraI- 568 (786)
+.|+-||+| ++-.+.+.+++.|+..+++|+. .++++==|++||..+ -++=+.+.+++
T Consensus 51 d~rllvI~GPCSIed~e~a~eyA~~Lk~l~~~~~d~l~ivmR~y~~KPRTs~g~kGl~~DP~ldgs~~i~~GL~~~R~ll 130 (349)
T PRK09261 51 DDRLLVVVGPCSIHDPKAALEYARRLAKLREELKDKLEIVMRVYFEKPRTTVGWKGLINDPDLDGSFDINDGLRIARKLL 130 (349)
T ss_pred CCCeEEEEcCCcCCCHHHHHHHHHHHHHHHhhhhcceEEEEEeccccCCCCCCCcCCCcCcCccccccHHHHHHHHHHHH
Confidence 467788887 4457888899999999999874 455666677786411 14446676776
Q ss_pred --HhcCCCCEEE--------------E---eCCCCcCCccCHHHHHHHH-hCCCEEEEEeC---CHHHHHHHH
Q psy11975 569 --ADNSPIPVII--------------Y---NNTFVTNIDISVDTLVKLA-HHENIRGVKDT---DNIKLANMA 618 (786)
Q Consensus 569 --AeAtdLPIiL--------------Y---NiP~~TGv~LSpelL~rLA-eiPNVVGIKDS---Dl~ri~~ll 618 (786)
.+..++|+.- + -+.++ ...-..+.+++ ..+--||+|.. ++..+...+
T Consensus 131 ~~~~e~GlpvatE~ld~~~~~y~~dlvs~~~IGAR---t~esq~hr~~asg~~~PVg~Kng~~g~i~~~l~Ai 200 (349)
T PRK09261 131 LDINELGLPAATEFLDPITPQYIADLISWGAIGAR---TTESQVHRELASGLSCPVGFKNGTDGNIKVAIDAI 200 (349)
T ss_pred HHHHHhCCCeEEEecccccHHHHHhhcceeeeccc---hhcCHHHHHHhcCCCCeeEecCCCCCCHHHHHhHH
Confidence 4667898862 1 22222 22335566666 68999999999 665555444
No 217
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=58.82 E-value=47 Score=35.77 Aligned_cols=35 Identities=11% Similarity=0.276 Sum_probs=28.9
Q ss_pred CCeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEcCC
Q psy11975 514 QADLLKPQKHTTTRATIDLTQKAAKAGANAALILCP 549 (786)
Q Consensus 514 RVPVIaGVGa~ST~EAIELAr~Ae~aGADAVmViPP 549 (786)
++||++-++. +..+..++++.++++|||++.+..-
T Consensus 154 ~~Pv~vKl~~-~~~~~~~~a~~~~~~G~d~i~~~nt 188 (296)
T cd04740 154 DVPVIVKLTP-NVTDIVEIARAAEEAGADGLTLINT 188 (296)
T ss_pred CCCEEEEeCC-CchhHHHHHHHHHHcCCCEEEEECC
Confidence 5799988764 4568999999999999999988653
No 218
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=58.36 E-value=2.8e+02 Score=32.53 Aligned_cols=159 Identities=13% Similarity=0.074 Sum_probs=83.0
Q ss_pred EEeCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHhcCCCCE---EEEeCCCCcCCccCHHHH
Q psy11975 518 LKPQKHTTTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPV---IIYNNTFVTNIDISVDTL 594 (786)
Q Consensus 518 IaGVGa~ST~EAIELAr~Ae~aGADAVmViPPyY~kps~S~eeLv~YFraIAeAtdLPI---iLYNiP~~TGv~LSpelL 594 (786)
++|.....-.-..+..+.|.++|+|.+-+.-+.-. .+.+... -+.+...++-+ +-|-. +...+++.+
T Consensus 87 ~~G~~~~pddvv~~~v~~A~~~Gvd~irif~~lnd-----~~n~~~~-v~~ak~~G~~v~~~i~~t~----~p~~~~~~~ 156 (448)
T PRK12331 87 LLGYRNYADDVVESFVQKSVENGIDIIRIFDALND-----VRNLETA-VKATKKAGGHAQVAISYTT----SPVHTIDYF 156 (448)
T ss_pred ccccccCchhhHHHHHHHHHHCCCCEEEEEEecCc-----HHHHHHH-HHHHHHcCCeEEEEEEeec----CCCCCHHHH
Confidence 45555543344456678889999998887764321 1222222 22333445432 23332 112556666
Q ss_pred HHHH----hC-CCEEEEEeC----CHHHHHHHHhhc---CCCCEEEEeCCcc------hhhhhhccCCcc-------ccc
Q psy11975 595 VKLA----HH-ENIRGVKDT----DNIKLANMANQT---KDLNFSVFAGSAG------YLLSGLLVGCAG-------GIN 649 (786)
Q Consensus 595 ~rLA----ei-PNVVGIKDS----Dl~ri~~ll~~~---~~~df~Vf~G~De------lLL~aL~~GAdG-------~Is 649 (786)
.+++ +. ...++|||+ .+.++.+++++. .+-.+. +-+++. ..+.++.+|++. +-.
T Consensus 157 ~~~a~~l~~~Gad~I~i~Dt~G~l~P~~v~~lv~alk~~~~~pi~-~H~Hnt~GlA~AN~laAieaGad~vD~sv~glg~ 235 (448)
T PRK12331 157 VKLAKEMQEMGADSICIKDMAGILTPYVAYELVKRIKEAVTVPLE-VHTHATSGIAEMTYLKAIEAGADIIDTAISPFAG 235 (448)
T ss_pred HHHHHHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHhcCCeEE-EEecCCCCcHHHHHHHHHHcCCCEEEeeccccCC
Confidence 6655 33 578999999 666666655422 222333 444443 245677889752 233
Q ss_pred cccccccHHHHHHHHHHH--cC-CHHHHHHHHHHhhhhHHH
Q psy11975 650 ALSAVLGGPICELYDLAK--AG-KWEEAMKLQHRLVKPDVT 687 (786)
Q Consensus 650 g~aN~~Pel~vaL~eA~~--aG-D~eeAreLQ~rL~pLi~~ 687 (786)
+++|..-+.++.+++... .| |++...++.+.+.++...
T Consensus 236 gaGN~~tE~lv~~L~~~g~~tgidl~~L~~~~~~~~~~r~~ 276 (448)
T PRK12331 236 GTSQPATESMVAALQDLGYDTGLDLEELSEIAEYFNPIRDH 276 (448)
T ss_pred CcCCHhHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 345554455555554421 11 445555555555555443
No 219
>PRK12399 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=58.34 E-value=2e+02 Score=32.51 Aligned_cols=137 Identities=9% Similarity=0.166 Sum_probs=74.0
Q ss_pred HHHHHHcCCCEEEEcCCCCCCCCCCH---HHHHHHHHHHHhcC---CCCEEE----EeCCCC--cCC---ccCHHHHHHH
Q psy11975 533 TQKAAKAGANAALILCPYYFQKKMTE---DLIYEHFISVADNS---PIPVII----YNNTFV--TNI---DISVDTLVKL 597 (786)
Q Consensus 533 Ar~Ae~aGADAVmViPPyY~kps~S~---eeLv~YFraIAeAt---dLPIiL----YNiP~~--TGv---~LSpelL~rL 597 (786)
+++.++.||||+=++- |+.++.++ +.-.+|.++|.+.+ +||++| |+.+.- .+. .+-|+.+.+.
T Consensus 111 ~~rike~GadavK~Ll--yy~pD~~~~in~~k~a~vervg~eC~a~dipf~lE~ltY~~~~~d~~~~~yak~kP~~V~~a 188 (324)
T PRK12399 111 AKRIKEEGADAVKFLL--YYDVDEPDEINEQKKAYIERIGSECVAEDIPFFLEILTYDEKIADNGSVEYAKVKPHKVNEA 188 (324)
T ss_pred HHHHHHhCCCeEEEEE--EECCCCCHHHHHHHHHHHHHHHHHHHHCCCCeEEEEeeccCcccccccHHHHhhChHHHHHH
Confidence 7888999999998873 77776333 33456666666555 799886 664321 111 1224444444
Q ss_pred H-hC--C--CEEEEEeC---CH---------------HH----HHHHHhhcCCCCEEEEeCC-cc-hhhh----hhccCC
Q psy11975 598 A-HH--E--NIRGVKDT---DN---------------IK----LANMANQTKDLNFSVFAGS-AG-YLLS----GLLVGC 644 (786)
Q Consensus 598 A-ei--P--NVVGIKDS---Dl---------------~r----i~~ll~~~~~~df~Vf~G~-De-lLL~----aL~~GA 644 (786)
+ ++ | +|-=+|-+ ++ .. +.+.-+ ..+-.+.++++. +. ++.. +..+|+
T Consensus 189 ~kefs~~~~gvDVlKvEvPvn~~~veG~~~~e~~yt~~eA~~~f~~~~~-~~~~P~i~LSaGV~~~~F~~~l~~A~~aGa 267 (324)
T PRK12399 189 MKVFSKPRFGVDVLKVEVPVNMKYVEGFAEGEVVYTKEEAAQHFKEQDA-ATHLPYIYLSAGVSAELFQETLVFAHEAGA 267 (324)
T ss_pred HHHhccCCCCCcEEEEecccccccccccCcccccccHHHHHHHHHHHhh-ccCCCEEEEcCCCCHHHHHHHHHHHHHcCC
Confidence 4 23 2 46666664 21 11 222222 233446666654 32 3333 445688
Q ss_pred --ccccccccccccHHHHHHHHHHHcCCHHHHHHH
Q psy11975 645 --AGGINALSAVLGGPICELYDLAKAGKWEEAMKL 677 (786)
Q Consensus 645 --dG~Isg~aN~~Pel~vaL~eA~~aGD~eeAreL 677 (786)
.|+++|=+ .+..-.+.|...+.+.+++.
T Consensus 268 ~fsGvL~GRA-----tW~~~v~~~~~~g~~~~~ew 297 (324)
T PRK12399 268 KFNGVLCGRA-----TWAGSVKVYIEQGEAAAREW 297 (324)
T ss_pred CcceEEeehh-----hhHhhhhhhhcCCHHHHHHH
Confidence 68888864 33334445555665555544
No 220
>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional
Probab=58.29 E-value=20 Score=44.02 Aligned_cols=62 Identities=19% Similarity=0.240 Sum_probs=48.5
Q ss_pred CCeEEEeCCCCCH--------HHHHHHHHHHHHcCCCEEEEcC-CCCCCCCCCHHHHHHHHHHHHhcCCCCEEEEeC
Q psy11975 514 QADLLKPQKHTTT--------RATIDLTQKAAKAGANAALILC-PYYFQKKMTEDLIYEHFISVADNSPIPVIIYNN 581 (786)
Q Consensus 514 RVPVIaGVGa~ST--------~EAIELAr~Ae~aGADAVmViP-PyY~kps~S~eeLv~YFraIAeAtdLPIiLYNi 581 (786)
+++||+=+--.|. .+..++|+..++.||+||.|+. |.||.-+ ++++++|.+++++||+-=|+
T Consensus 49 ~~~vIaEiKraSPs~G~i~~~~d~~~~a~~y~~~GA~aiSVlTe~~~F~Gs------~~~l~~vr~~v~~PvLrKDF 119 (695)
T PRK13802 49 GIPVIAEIKRASPSKGHLSDIPDPAALAREYEQGGASAISVLTEGRRFLGS------LDDFDKVRAAVHIPVLRKDF 119 (695)
T ss_pred CCeEEEEeecCCCCCCcCCCCCCHHHHHHHHHHcCCcEEEEecCcCcCCCC------HHHHHHHHHhCCCCEEeccc
Confidence 3567764433332 3889999999999999999887 7788776 57888888889999998775
No 221
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.
Probab=57.78 E-value=25 Score=37.39 Aligned_cols=55 Identities=15% Similarity=0.159 Sum_probs=41.9
Q ss_pred CCCeEEE--eCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHH
Q psy11975 513 WQADLLK--PQKHTTTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVA 569 (786)
Q Consensus 513 GRVPVIa--GVGa~ST~EAIELAr~Ae~aGADAVmViPPyY~kps~S~eeLv~YFraIA 569 (786)
.++||++ |+...+.+++++.++.+.++||+++.+..-.|..++ ..+..+-++.+.
T Consensus 191 ~~iPVva~GGi~~~~~~~~~~~i~~~~~aGa~Gia~g~~i~~~~d--p~~~~~~l~~~i 247 (258)
T TIGR01949 191 CPAPVVVAGGPKTNSDREFLQMIKDAMEAGAAGVAVGRNIFQHDD--PVGITKAVCKIV 247 (258)
T ss_pred CCCcEEEecCCCCCCHHHHHHHHHHHHHcCCcEEehhhHhhcCCC--HHHHHHHHHHHH
Confidence 3578866 555557899999999999999999999988776655 666666555543
No 222
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=57.21 E-value=1e+02 Score=35.68 Aligned_cols=128 Identities=13% Similarity=0.146 Sum_probs=78.2
Q ss_pred cCCCCeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHhcC-CCCEEEEeCCCCcCCcc
Q psy11975 511 REWQADLLKPQKHTTTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNS-PIPVIIYNNTFVTNIDI 589 (786)
Q Consensus 511 vaGRVPVIaGVGa~ST~EAIELAr~Ae~aGADAVmViPPyY~kps~S~eeLv~YFraIAeAt-dLPIiLYNiP~~TGv~L 589 (786)
..||+-|.+.++- ..++.+.++...++|+|.|.+-.-. . ..+.+.+.++.|-+.. +++|++=|+ .
T Consensus 138 ~~~~l~v~aavg~--~~~~~~~v~~lv~aGvDvI~iD~a~---g--~~~~~~~~v~~ik~~~p~~~vi~g~V-------~ 203 (404)
T PRK06843 138 LNNKLRVGAAVSI--DIDTIERVEELVKAHVDILVIDSAH---G--HSTRIIELVKKIKTKYPNLDLIAGNI-------V 203 (404)
T ss_pred hhcCeEEEEEEeC--CHHHHHHHHHHHhcCCCEEEEECCC---C--CChhHHHHHHHHHhhCCCCcEEEEec-------C
Confidence 4567777666654 3668999999999999999864432 1 1355777777887776 588888775 4
Q ss_pred CHHHHHHHHhC--CCE-EEE--------E--eC----CHHHHHHHHhhcCCCCEEEE-eCC---cchhhhhhccCCcccc
Q psy11975 590 SVDTLVKLAHH--ENI-RGV--------K--DT----DNIKLANMANQTKDLNFSVF-AGS---AGYLLSGLLVGCAGGI 648 (786)
Q Consensus 590 SpelL~rLAei--PNV-VGI--------K--DS----Dl~ri~~ll~~~~~~df~Vf-~G~---DelLL~aL~~GAdG~I 648 (786)
+.+....|.+. +.| +|+ + +. ++..+..+.+.....++.|+ .|. .+.+..+|.+||++++
T Consensus 204 T~e~a~~l~~aGaD~I~vG~g~Gs~c~tr~~~g~g~p~ltai~~v~~~~~~~~vpVIAdGGI~~~~Di~KALalGA~aVm 283 (404)
T PRK06843 204 TKEAALDLISVGADCLKVGIGPGSICTTRIVAGVGVPQITAICDVYEVCKNTNICIIADGGIRFSGDVVKAIAAGADSVM 283 (404)
T ss_pred CHHHHHHHHHcCCCEEEECCCCCcCCcceeecCCCCChHHHHHHHHHHHhhcCCeEEEeCCCCCHHHHHHHHHcCCCEEE
Confidence 56777777643 332 332 1 11 22222222221112234443 332 1346788999999999
Q ss_pred cccc
Q psy11975 649 NALS 652 (786)
Q Consensus 649 sg~a 652 (786)
.|..
T Consensus 284 vGs~ 287 (404)
T PRK06843 284 IGNL 287 (404)
T ss_pred Ecce
Confidence 8865
No 223
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=56.74 E-value=22 Score=36.19 Aligned_cols=55 Identities=13% Similarity=0.190 Sum_probs=44.0
Q ss_pred eCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHhcCCCCEEEEeCC
Q psy11975 520 PQKHTTTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNT 582 (786)
Q Consensus 520 GVGa~ST~EAIELAr~Ae~aGADAVmViPPyY~kps~S~eeLv~YFraIAeAtdLPIiLYNiP 582 (786)
+-...+.++.++.++.+.+.|+|+|++.+... +.+...++.+ ...++||+.+|.+
T Consensus 35 ~~~~~d~~~q~~~i~~~i~~~~d~Iiv~~~~~-------~~~~~~l~~~-~~~gIpvv~~d~~ 89 (257)
T PF13407_consen 35 FDAQNDPEEQIEQIEQAISQGVDGIIVSPVDP-------DSLAPFLEKA-KAAGIPVVTVDSD 89 (257)
T ss_dssp EESTTTHHHHHHHHHHHHHTTESEEEEESSST-------TTTHHHHHHH-HHTTSEEEEESST
T ss_pred CCCCCCHHHHHHHHHHHHHhcCCEEEecCCCH-------HHHHHHHHHH-hhcCceEEEEecc
Confidence 67788889999999999999999999987543 2244556654 4569999999988
No 224
>TIGR00222 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase. Members of this family are 3-methyl-2-oxobutanoate hydroxymethyltransferase, the first enzyme of the pantothenate biosynthesis pathway. An alternate name is ketopantoate hydroxymethyltransferase.
Probab=56.72 E-value=20 Score=39.05 Aligned_cols=67 Identities=13% Similarity=0.188 Sum_probs=43.3
Q ss_pred eCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHhcCCCCEEEEeC-CCCcCCccCHHHHHHH
Q psy11975 520 PQKHTTTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNN-TFVTNIDISVDTLVKL 597 (786)
Q Consensus 520 GVGa~ST~EAIELAr~Ae~aGADAVmViPPyY~kps~S~eeLv~YFraIAeAtdLPIiLYNi-P~~TGv~LSpelL~rL 597 (786)
|-.....+++++.|+..+++||+++++-... . +-.++|.+++++|++=.-. |...|.-|=...+.-|
T Consensus 153 grt~~~a~~~i~~A~a~e~AGA~~ivlE~vp-------~----~~a~~It~~l~iP~iGIGaG~~~dGQvlV~~D~lG~ 220 (263)
T TIGR00222 153 GKDEEAAKKLLEDALALEEAGAQLLVLECVP-------V----ELAAKITEALAIPVIGIGAGNVCDGQILVMHDALGI 220 (263)
T ss_pred CCCHHHHHHHHHHHHHHHHcCCCEEEEcCCc-------H----HHHHHHHHhCCCCEEeeccCCCCCceeeeHHhhcCC
Confidence 3334456789999999999999999886421 1 4456788888899874322 4444544444333333
No 225
>COG2159 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]
Probab=56.48 E-value=45 Score=36.58 Aligned_cols=74 Identities=14% Similarity=0.103 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHhcCCCCEEEEeCCCCcCCcc-----CHHHHHHHH-hCC
Q psy11975 528 ATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDI-----SVDTLVKLA-HHE 601 (786)
Q Consensus 528 EAIELAr~Ae~aGADAVmViPPyY~kps~S~eeLv~YFraIAeAtdLPIiLYNiP~~TGv~L-----SpelL~rLA-eiP 601 (786)
.+.|+-|.+.+.|..++.+.|..-.... +++.+...|+ .|+..++||+++.=+...+..+ .+-.+..++ ++|
T Consensus 114 a~~E~er~v~~~gf~g~~l~p~~~~~~~-~~~~~~pi~~-~a~~~gvpv~ihtG~~~~~~~~~~~~~~p~~~~~va~~fP 191 (293)
T COG2159 114 AAEELERRVRELGFVGVKLHPVAQGFYP-DDPRLYPIYE-AAEELGVPVVIHTGAGPGGAGLEKGHSDPLYLDDVARKFP 191 (293)
T ss_pred HHHHHHHHHHhcCceEEEecccccCCCC-CChHHHHHHH-HHHHcCCCEEEEeCCCCCCcccccCCCCchHHHHHHHHCC
Confidence 4556666667789999999988655332 2444455554 4667899999976554333322 234556666 466
Q ss_pred CE
Q psy11975 602 NI 603 (786)
Q Consensus 602 NV 603 (786)
++
T Consensus 192 ~l 193 (293)
T COG2159 192 EL 193 (293)
T ss_pred CC
Confidence 53
No 226
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=56.32 E-value=1.7e+02 Score=31.19 Aligned_cols=133 Identities=11% Similarity=-0.047 Sum_probs=78.3
Q ss_pred EEEeCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHhcCCCCEEEEeCCCCcCCccCHHHHHH
Q psy11975 517 LLKPQKHTTTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVK 596 (786)
Q Consensus 517 VIaGVGa~ST~EAIELAr~Ae~aGADAVmViPPyY~kps~S~eeLv~YFraIAeAtdLPIiLYNiP~~TGv~LSpelL~r 596 (786)
+++|+|.--+.+ .++.|.++||+.++ .|.+ +.+++++.++ .++|++ | |+ +++..+.+
T Consensus 71 ~~vGaGTVl~~e---~a~~a~~aGA~FiV--sP~~------~~~v~~~~~~----~~i~~i----P---G~-~TpsEi~~ 127 (222)
T PRK07114 71 MILGVGSIVDAA---TAALYIQLGANFIV--TPLF------NPDIAKVCNR----RKVPYS----P---GC-GSLSEIGY 127 (222)
T ss_pred eEEeeEeCcCHH---HHHHHHHcCCCEEE--CCCC------CHHHHHHHHH----cCCCEe----C---CC-CCHHHHHH
Confidence 889999865554 45678899999654 3432 4667777664 345543 4 43 67766666
Q ss_pred HHhCCCEEEEEeC-----CHHHHHHHHhhcCCCCEE--EEeCCcc---hhhhhhccCCccccccccccccHHHHHHHHHH
Q psy11975 597 LAHHENIRGVKDT-----DNIKLANMANQTKDLNFS--VFAGSAG---YLLSGLLVGCAGGINALSAVLGGPICELYDLA 666 (786)
Q Consensus 597 LAeiPNVVGIKDS-----Dl~ri~~ll~~~~~~df~--Vf~G~De---lLL~aL~~GAdG~Isg~aN~~Pel~vaL~eA~ 666 (786)
..+. +...+|.= .+..+..+.. .-+++. --.|-+. .+.+.|.+|+.++-.|. +++|.. +.
T Consensus 128 A~~~-Ga~~vKlFPA~~~G~~~ikal~~--p~p~i~~~ptGGV~~~~~n~~~yl~aGa~avg~Gs-~L~~~~------~~ 197 (222)
T PRK07114 128 AEEL-GCEIVKLFPGSVYGPGFVKAIKG--PMPWTKIMPTGGVEPTEENLKKWFGAGVTCVGMGS-KLIPKE------AL 197 (222)
T ss_pred HHHC-CCCEEEECcccccCHHHHHHHhc--cCCCCeEEeCCCCCcchhcHHHHHhCCCEEEEECh-hhcCcc------cc
Confidence 5543 23446665 4566666543 224444 3445553 57778888877655443 455532 25
Q ss_pred HcCCHHHHHHHHHHhh
Q psy11975 667 KAGKWEEAMKLQHRLV 682 (786)
Q Consensus 667 ~aGD~eeAreLQ~rL~ 682 (786)
.++|+++..+..+.+.
T Consensus 198 ~~~~~~~i~~~a~~~~ 213 (222)
T PRK07114 198 AAKDYAGIEQKVREAL 213 (222)
T ss_pred ccccHHHHHHHHHHHH
Confidence 6677776665544443
No 227
>TIGR02708 L_lactate_ox L-lactate oxidase. Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence.
Probab=56.28 E-value=1.7e+02 Score=33.52 Aligned_cols=33 Identities=12% Similarity=0.100 Sum_probs=23.8
Q ss_pred eEEEeCCCC-CHHHHHHHHHHHHHcCCCEEEEcC
Q psy11975 516 DLLKPQKHT-TTRATIDLTQKAAKAGANAALILC 548 (786)
Q Consensus 516 PVIaGVGa~-ST~EAIELAr~Ae~aGADAVmViP 548 (786)
+...+..-. +-+-+.++.++|+++|+.|++++-
T Consensus 134 ~~wfQlY~~~dr~~~~~li~RA~~aG~~alvlTv 167 (367)
T TIGR02708 134 PHWFQFYMSKDDGINRDIMDRVKADGAKAIVLTA 167 (367)
T ss_pred ceEEEEeccCCHHHHHHHHHHHHHcCCCEEEEec
Confidence 344444442 345568999999999999999964
No 228
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=56.24 E-value=1.3e+02 Score=33.44 Aligned_cols=162 Identities=10% Similarity=-0.004 Sum_probs=0.0
Q ss_pred CCeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHhcCCCCEEEEeCCCCcCCccCHHH
Q psy11975 514 QADLLKPQKHTTTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDT 593 (786)
Q Consensus 514 RVPVIaGVGa~ST~EAIELAr~Ae~aGADAVmViPPyY~kps~S~eeLv~YFraIAeAtdLPIiLYNiP~~TGv~LSpel 593 (786)
++|+++++.. ++.|.++.+.|||.|--.--.-... --+.++|.+.|-... +.=..++.++
T Consensus 121 ~~~fmad~~~------l~EAlrai~~GadmI~Ttge~gtg~---v~~av~h~r~~~~~i-----------~~L~gyt~~~ 180 (293)
T PRK04180 121 TVPFVCGARN------LGEALRRIAEGAAMIRTKGEAGTGN---VVEAVRHMRQINGEI-----------RRLTSMSEDE 180 (293)
T ss_pred CCCEEccCCC------HHHHHHHHHCCCCeeeccCCCCCcc---HHHHHHHHHHHHHHH-----------HHHhCCCHHH
Q ss_pred HHHHHhCCCEEEEEeC-CHHHHHHHHhhcCCCCEEEEeCCc---chhhhhhccCCccccccccccccHHHHHHHHHHHc-
Q psy11975 594 LVKLAHHENIRGVKDT-DNIKLANMANQTKDLNFSVFAGSA---GYLLSGLLVGCAGGINALSAVLGGPICELYDLAKA- 668 (786)
Q Consensus 594 L~rLAeiPNVVGIKDS-Dl~ri~~ll~~~~~~df~Vf~G~D---elLL~aL~~GAdG~Isg~aN~~Pel~vaL~eA~~a- 668 (786)
+...++. +. +++.+.++.+...-|=+.+-.|.= +.+...+.+|++|++.+.+-+-..-..++.+++.+
T Consensus 181 ~~~~a~~-------~~~~~elL~ei~~~~~iPVV~~AeGGI~TPedaa~vme~GAdgVaVGSaI~ks~dP~~~akafv~a 253 (293)
T PRK04180 181 LYTAAKE-------LQAPYELVKEVAELGRLPVVNFAAGGIATPADAALMMQLGADGVFVGSGIFKSGDPEKRARAIVEA 253 (293)
T ss_pred HHhhccc-------cCCCHHHHHHHHHhCCCCEEEEEeCCCCCHHHHHHHHHhCCCEEEEcHHhhcCCCHHHHHHHHHHH
Q ss_pred ----CCHHHHHHHHHHhhhhHHHHHhhhhccccCHHHH--HHHHHHcCC
Q psy11975 669 ----GKWEEAMKLQHRLVKPDVTVRNVLLMKEMGVPGV--RAAMELYGY 711 (786)
Q Consensus 669 ----GD~eeAreLQ~rL~pLi~~l~~~~~~~~~~ia~l--KaaL~lrGI 711 (786)
.|.+.-.++...|-..+ .+..+..+ +..|..||.
T Consensus 254 i~~~~~~~~~~~~s~~~~~~m---------~g~~~~~~~~~~~~~~r~~ 293 (293)
T PRK04180 254 TTHYDDPEVLAEVSKGLGEAM---------VGIDIDELPPEERLQERGW 293 (293)
T ss_pred HHHcCCHHHHHHHHccccccc---------CCCccccCCHHHHhhhcCC
No 229
>TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase. This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization.
Probab=56.08 E-value=1.9e+02 Score=32.06 Aligned_cols=83 Identities=10% Similarity=0.033 Sum_probs=51.8
Q ss_pred EEEeCCCCCHHHHHHHHHHHHHcCCCEEEEcCC-----CCCCCC---CCHHHHHHHHHHHHhcCCCCEEEEeCCCCcCCc
Q psy11975 517 LLKPQKHTTTRATIDLTQKAAKAGANAALILCP-----YYFQKK---MTEDLIYEHFISVADNSPIPVIIYNNTFVTNID 588 (786)
Q Consensus 517 VIaGVGa~ST~EAIELAr~Ae~aGADAVmViPP-----yY~kps---~S~eeLv~YFraIAeAtdLPIiLYNiP~~TGv~ 588 (786)
|+.|+-.. --|+.++++|.+++.+..- .+..|+ ++-+++++..++|++++++||++ |+- +|+.
T Consensus 19 ~~p~v~Da------~SArl~e~aGf~ai~~sg~~~~as~lG~pD~g~l~~~e~~~~~~~I~~~~~lPv~a-D~d--tGyG 89 (294)
T TIGR02319 19 VVPSAYDA------LSAKVIQQAGFPAVHMTGSGTSASMLGLPDLGFTSVSEQAINAKNIVLAVDVPVIM-DAD--AGYG 89 (294)
T ss_pred EeecCcCH------HHHHHHHHcCCCEEEecHHHHHHHHcCCCCcCCCCHHHHHHHHHHHHhccCCCEEE-ECC--CCCC
Confidence 44576662 2367778889999987531 122233 46899999999999999999665 543 4544
Q ss_pred cCHH---HHHHHHhCCCEEEEEeC
Q psy11975 589 ISVD---TLVKLAHHENIRGVKDT 609 (786)
Q Consensus 589 LSpe---lL~rLAeiPNVVGIKDS 609 (786)
=.++ ++.++.+ -.++||=.+
T Consensus 90 ~~~~v~r~V~~~~~-aGaagi~IE 112 (294)
T TIGR02319 90 NAMSVWRATREFER-VGIVGYHLE 112 (294)
T ss_pred CcHHHHHHHHHHHH-cCCeEEEEE
Confidence 3444 3444442 245555443
No 230
>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway. Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.
Probab=55.94 E-value=19 Score=38.97 Aligned_cols=79 Identities=15% Similarity=0.132 Sum_probs=49.0
Q ss_pred CCCCCCCccccCCCCeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHhcCCCCEEEEe
Q psy11975 501 VGPRSVRPSEREWQADLLKPQKHTTTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYN 580 (786)
Q Consensus 501 ~~~r~v~veevaGRVPVIaGVGa~ST~EAIELAr~Ae~aGADAVmViPPyY~kps~S~eeLv~YFraIAeAtdLPIiLYN 580 (786)
++||++... |.. .+.|-.....+++++.|+..+++|||++.+-.+. . +-.++|.+++++|+|=.-
T Consensus 136 L~pq~~~~~---gg~-~~~grt~~~a~~~i~ra~a~~~AGA~~i~lE~v~-------~----~~~~~i~~~v~iP~igiG 200 (254)
T cd06557 136 LTPQSVNQL---GGY-KVQGKTEEEAERLLEDALALEEAGAFALVLECVP-------A----ELAKEITEALSIPTIGIG 200 (254)
T ss_pred ccceeeecc---CCc-eeccCCHHHHHHHHHHHHHHHHCCCCEEEEcCCC-------H----HHHHHHHHhCCCCEEEec
Confidence 466665421 212 2333334447899999999999999999887541 2 345678888889988443
Q ss_pred C-CCCcCCccCHHHH
Q psy11975 581 N-TFVTNIDISVDTL 594 (786)
Q Consensus 581 i-P~~TGv~LSpelL 594 (786)
. |...|.-|=...+
T Consensus 201 aG~~~dgqvlv~~D~ 215 (254)
T cd06557 201 AGPDCDGQVLVWHDM 215 (254)
T ss_pred cCCCCCceeehHHhh
Confidence 3 4444444333333
No 231
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=55.92 E-value=3.3e+02 Score=32.52 Aligned_cols=119 Identities=13% Similarity=0.114 Sum_probs=70.1
Q ss_pred EEeCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHhcCCC--CEEEEeCCCCcCCccCHHHHH
Q psy11975 518 LKPQKHTTTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPI--PVIIYNNTFVTNIDISVDTLV 595 (786)
Q Consensus 518 IaGVGa~ST~EAIELAr~Ae~aGADAVmViPPyY~kps~S~eeLv~YFraIAeAtdL--PIiLYNiP~~TGv~LSpelL~ 595 (786)
++|.....-.-.....+.|.+.|+|.+-+.-|.- +.+.+....+.+-++-.. ..+.|..- ...+++.+.
T Consensus 88 ~vGy~~y~ddvv~~fv~~a~~~Gidi~RIfd~ln-----dv~nl~~ai~~vk~ag~~~~~~i~yt~s----p~~t~e~~~ 158 (499)
T PRK12330 88 LLGYRHYEDEVVDRFVEKSAENGMDVFRVFDALN-----DPRNLEHAMKAVKKVGKHAQGTICYTVS----PIHTVEGFV 158 (499)
T ss_pred cCCccCcchhHHHHHHHHHHHcCCCEEEEEecCC-----hHHHHHHHHHHHHHhCCeEEEEEEEecC----CCCCHHHHH
Confidence 3455554434445568899999999988876542 234555555555444332 35566541 234778777
Q ss_pred HHH----hC-CCEEEEEeC----CHHHHHHHHhh---cCCCCEEE-EeCCcc------hhhhhhccCCc
Q psy11975 596 KLA----HH-ENIRGVKDT----DNIKLANMANQ---TKDLNFSV-FAGSAG------YLLSGLLVGCA 645 (786)
Q Consensus 596 rLA----ei-PNVVGIKDS----Dl~ri~~ll~~---~~~~df~V-f~G~De------lLL~aL~~GAd 645 (786)
+++ +. -..+.|||+ .+.++.+++.. ..++++.| +-+++. ..+.++.+|++
T Consensus 159 ~~a~~l~~~Gad~I~IkDtaGll~P~~~~~LV~~Lk~~~~~~ipI~~H~Hnt~GlA~An~laAieAGad 227 (499)
T PRK12330 159 EQAKRLLDMGADSICIKDMAALLKPQPAYDIVKGIKEACGEDTRINLHCHSTTGVTLVSLMKAIEAGVD 227 (499)
T ss_pred HHHHHHHHcCCCEEEeCCCccCCCHHHHHHHHHHHHHhCCCCCeEEEEeCCCCCcHHHHHHHHHHcCCC
Confidence 776 23 579999999 66666665542 22223222 444543 24567788984
No 232
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=55.63 E-value=1.1e+02 Score=35.29 Aligned_cols=39 Identities=8% Similarity=0.026 Sum_probs=32.5
Q ss_pred CCeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCC
Q psy11975 514 QADLLKPQKHTTTRATIDLTQKAAKAGANAALILCPYYFQ 553 (786)
Q Consensus 514 RVPVIaGVGa~ST~EAIELAr~Ae~aGADAVmViPPyY~k 553 (786)
++||++=++- +..+..++|+.|.+.|||||.++.-.+..
T Consensus 182 ~iPv~vKLsP-n~t~i~~ia~aa~~~Gadgi~liNT~~~~ 220 (385)
T PLN02495 182 TVPVWAKMTP-NITDITQPARVALKSGCEGVAAINTIMSV 220 (385)
T ss_pred cCceEEEeCC-ChhhHHHHHHHHHHhCCCEEEEecccCcc
Confidence 5899998885 45568899999999999999999866533
No 233
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=55.12 E-value=17 Score=42.31 Aligned_cols=47 Identities=19% Similarity=0.257 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHcCCCEEEEcC-CCCCCCCCCHHHHHHHHHHHHhcCCCCEEEEeC
Q psy11975 528 ATIDLTQKAAKAGANAALILC-PYYFQKKMTEDLIYEHFISVADNSPIPVIIYNN 581 (786)
Q Consensus 528 EAIELAr~Ae~aGADAVmViP-PyY~kps~S~eeLv~YFraIAeAtdLPIiLYNi 581 (786)
+..++|+.+ +.||+|+.++. |.||.-+ .+|++++.+++++||+--|+
T Consensus 71 d~~~~a~~y-~~gA~aiSVlTe~~~F~Gs------~~~l~~vr~~v~~PvLrKDF 118 (454)
T PRK09427 71 DPAEIARVY-KHYASAISVLTDEKYFQGS------FDFLPIVRAIVTQPILCKDF 118 (454)
T ss_pred CHHHHHHHH-HcCCeEEEEecCcCcCCCC------HHHHHHHHHhCCCCEEeccc
Confidence 667888888 88999999888 7888776 67788999999999998776
No 234
>TIGR02708 L_lactate_ox L-lactate oxidase. Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence.
Probab=55.03 E-value=92 Score=35.61 Aligned_cols=29 Identities=17% Similarity=0.136 Sum_probs=23.8
Q ss_pred CCeEEE-eCCCCCHHHHHHHHHHHHHcCCCEEEEcC
Q psy11975 514 QADLLK-PQKHTTTRATIDLTQKAAKAGANAALILC 548 (786)
Q Consensus 514 RVPVIa-GVGa~ST~EAIELAr~Ae~aGADAVmViP 548 (786)
++|||+ ||+. .+.|+.|.++|+|+|.|..
T Consensus 228 ~~PvivKGv~~------~eda~~a~~~Gvd~I~VS~ 257 (367)
T TIGR02708 228 GLPVYVKGPQC------PEDADRALKAGASGIWVTN 257 (367)
T ss_pred CCCEEEeCCCC------HHHHHHHHHcCcCEEEECC
Confidence 468888 7765 6778888999999999886
No 235
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=54.82 E-value=2.6e+02 Score=28.80 Aligned_cols=125 Identities=10% Similarity=0.041 Sum_probs=65.1
Q ss_pred CCeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHhcCCC-CEEEE-eCC--------C
Q psy11975 514 QADLLKPQKHTTTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPI-PVIIY-NNT--------F 583 (786)
Q Consensus 514 RVPVIaGVGa~ST~EAIELAr~Ae~aGADAVmViPPyY~kps~S~eeLv~YFraIAeAtdL-PIiLY-NiP--------~ 583 (786)
.+||++|-+=.+.+++.+ +.+.|||.|++..-.+.. . +.++++++..+. .+++- +++ .
T Consensus 73 ~~pv~~~GgI~~~e~~~~----~~~~Gad~vvigs~~l~d----p----~~~~~i~~~~g~~~i~~sid~~~~~~~~~~~ 140 (234)
T cd04732 73 GIPVQVGGGIRSLEDIER----LLDLGVSRVIIGTAAVKN----P----ELVKELLKEYGGERIVVGLDAKDGKVATKGW 140 (234)
T ss_pred CCCEEEeCCcCCHHHHHH----HHHcCCCEEEECchHHhC----h----HHHHHHHHHcCCceEEEEEEeeCCEEEECCC
Confidence 478999777666555544 445899999887654322 2 334445544432 22221 111 1
Q ss_pred CcCCccCHH-HHHHHHh--CCCEEEEE-------eC-CHHHHHHHHhhcCCCCEEEEeCC--c--chhhhhhccCCcccc
Q psy11975 584 VTNIDISVD-TLVKLAH--HENIRGVK-------DT-DNIKLANMANQTKDLNFSVFAGS--A--GYLLSGLLVGCAGGI 648 (786)
Q Consensus 584 ~TGv~LSpe-lL~rLAe--iPNVVGIK-------DS-Dl~ri~~ll~~~~~~df~Vf~G~--D--elLL~aL~~GAdG~I 648 (786)
......++. .+.++.+ ...|+-.- .. |++.+.++.+. . ++.++.+. . +.+...+..|++|++
T Consensus 141 ~~~~~~~~~~~~~~~~~~ga~~iii~~~~~~g~~~g~~~~~i~~i~~~-~--~ipvi~~GGi~~~~di~~~~~~Ga~gv~ 217 (234)
T cd04732 141 LETSEVSLEELAKRFEELGVKAIIYTDISRDGTLSGPNFELYKELAAA-T--GIPVIASGGVSSLDDIKALKELGVAGVI 217 (234)
T ss_pred eeecCCCHHHHHHHHHHcCCCEEEEEeecCCCccCCCCHHHHHHHHHh-c--CCCEEEecCCCCHHHHHHHHHCCCCEEE
Confidence 111234443 3344443 33443331 11 66777777652 2 33444333 2 235566778999999
Q ss_pred ccccc
Q psy11975 649 NALSA 653 (786)
Q Consensus 649 sg~aN 653 (786)
.+.+-
T Consensus 218 vg~~~ 222 (234)
T cd04732 218 VGKAL 222 (234)
T ss_pred EeHHH
Confidence 98753
No 236
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=54.73 E-value=54 Score=36.68 Aligned_cols=71 Identities=17% Similarity=0.074 Sum_probs=45.3
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCC-CHHHHHHHHHHHHhcC--CCCEEEEeCCCCcCCccCHHHHHHHHh
Q psy11975 523 HTTTRATIDLTQKAAKAGANAALILCPYYFQKKM-TEDLIYEHFISVADNS--PIPVIIYNNTFVTNIDISVDTLVKLAH 599 (786)
Q Consensus 523 a~ST~EAIELAr~Ae~aGADAVmViPPyY~kps~-S~eeLv~YFraIAeAt--dLPIiLYNiP~~TGv~LSpelL~rLAe 599 (786)
+.+.+|++++++.++++|+|.+-+....|..... ....-..+.+.|.++. ++||+. .|.-.+++...++.+
T Consensus 231 g~~~ee~~~i~~~L~~~GvD~I~Vs~g~~~~~~~~~~~~~~~~~~~ik~~~~~~iPVi~------~Ggi~t~e~ae~~l~ 304 (353)
T cd04735 231 GIRMEDTLALVDKLADKGLDYLHISLWDFDRKSRRGRDDNQTIMELVKERIAGRLPLIA------VGSINTPDDALEALE 304 (353)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEeccCccccccccCCcchHHHHHHHHHHhCCCCCEEE------ECCCCCHHHHHHHHH
Confidence 4578999999999999999999998765432110 0111234445555554 678764 233346777777654
No 237
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=54.64 E-value=1.9e+02 Score=30.95 Aligned_cols=112 Identities=13% Similarity=-0.026 Sum_probs=71.5
Q ss_pred eEEEeCCCCCHHHHHHHHHHHHHcCC--CEEEEcCCCCCCCCCCHHHHHHHHHHHHhcCCCCEEEEeCCCCcCCccCHHH
Q psy11975 516 DLLKPQKHTTTRATIDLTQKAAKAGA--NAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDT 593 (786)
Q Consensus 516 PVIaGVGa~ST~EAIELAr~Ae~aGA--DAVmViPPyY~kps~S~eeLv~YFraIAeAtdLPIiLYNiP~~TGv~LSpel 593 (786)
-|.+++=+. .+..+..+...+.|+ .+-+++.|.- + .+.+ +.+.+.++.=+++=-.|+..|..+-++.
T Consensus 94 ~It~H~Ea~--~~~~~~l~~Ik~~g~~~kaGlalnP~T--p---~~~i----~~~l~~vD~VLiMtV~PGfgGQ~f~~~~ 162 (228)
T PRK08091 94 IVTLQVEQT--HDLALTIEWLAKQKTTVLIGLCLCPET--P---ISLL----EPYLDQIDLIQILTLDPRTGTKAPSDLI 162 (228)
T ss_pred EEEEcccCc--ccHHHHHHHHHHCCCCceEEEEECCCC--C---HHHH----HHHHhhcCEEEEEEECCCCCCccccHHH
Confidence 355666642 455667777788898 8888887752 1 3333 3334456665666678999999999888
Q ss_pred HHHHHhCCCEEEEEeCCHHHHHHHHhhcCCCCE--EEEeCCc-chhhhhhccCCccccccccc
Q psy11975 594 LVKLAHHENIRGVKDTDNIKLANMANQTKDLNF--SVFAGSA-GYLLSGLLVGCAGGINALSA 653 (786)
Q Consensus 594 L~rLAeiPNVVGIKDSDl~ri~~ll~~~~~~df--~Vf~G~D-elLL~aL~~GAdG~Isg~aN 653 (786)
+.++. ++++++.+ .+-++ .|=.|-. +.+-....+|++.++.|.+-
T Consensus 163 l~KI~--------------~lr~~~~~-~~~~~~IeVDGGI~~~ti~~l~~aGaD~~V~GSal 210 (228)
T PRK08091 163 LDRVI--------------QVENRLGN-RRVEKLISIDGSMTLELASYLKQHQIDWVVSGSAL 210 (228)
T ss_pred HHHHH--------------HHHHHHHh-cCCCceEEEECCCCHHHHHHHHHCCCCEEEEChhh
Confidence 88884 44555542 23233 3323333 34556678999999999763
No 238
>TIGR02317 prpB methylisocitrate lyase. Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus.
Probab=54.01 E-value=2.4e+02 Score=31.25 Aligned_cols=49 Identities=16% Similarity=0.139 Sum_probs=36.0
Q ss_pred HHHHHHcCCCEEEEcCC----CCCCCC---CCHHHHHHHHHHHHhcCCCCEEEEeCC
Q psy11975 533 TQKAAKAGANAALILCP----YYFQKK---MTEDLIYEHFISVADNSPIPVIIYNNT 582 (786)
Q Consensus 533 Ar~Ae~aGADAVmViPP----yY~kps---~S~eeLv~YFraIAeAtdLPIiLYNiP 582 (786)
|+.++++|.+++.+..= ....|+ ++.+++++..+.|++++++||+ -|+-
T Consensus 26 Ari~e~aGf~Ai~~sg~~~a~~lG~pD~g~lt~~e~~~~~~~I~~~~~iPvi-aD~d 81 (285)
T TIGR02317 26 ALLAERAGFEAIYLSGAAVAASLGLPDLGITTLDEVAEDARRITRVTDLPLL-VDAD 81 (285)
T ss_pred HHHHHHcCCCEEEEcHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCCEE-EECC
Confidence 56777789999987641 111222 4689999999999999999976 4553
No 239
>cd08211 RuBisCO_large_II Ribulose bisphosphate carboxylase large chain, Form II. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV , which differ in their taxonomic distribution and subunit composition. Form II is mainly found in bacteria, and forms large subunit oligomers (dimers, tetramers, etc.) that do not include small subunits.
Probab=53.97 E-value=1.2e+02 Score=35.46 Aligned_cols=38 Identities=11% Similarity=-0.162 Sum_probs=30.5
Q ss_pred cCCCCeEEEeCCCCCHHHHHHHHHHHHHcCC-----CEEEEcC
Q psy11975 511 REWQADLLKPQKHTTTRATIDLTQKAAKAGA-----NAALILC 548 (786)
Q Consensus 511 vaGRVPVIaGVGa~ST~EAIELAr~Ae~aGA-----DAVmViP 548 (786)
++.+.-..+++++.++++.++.++.|++.|+ .++|+-+
T Consensus 221 TG~~~~ya~NiTa~~~~em~~ra~~a~~~gg~~~G~~~vMv~~ 263 (439)
T cd08211 221 TGEAKLFSANITADDPDEMIARGEYILEAFGPNAGHVAFLVDG 263 (439)
T ss_pred hCCcceEEecCCCCCHHHHHHHHHHHHHhcCcccCceEEEECc
Confidence 4444445579998899999999999998877 8888874
No 240
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=53.96 E-value=30 Score=37.32 Aligned_cols=50 Identities=22% Similarity=0.383 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHhcCCCCEEEEe
Q psy11975 527 RATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYN 580 (786)
Q Consensus 527 ~EAIELAr~Ae~aGADAVmViPPyY~kps~S~eeLv~YFraIAeAtdLPIiLYN 580 (786)
.++-+.++.+.+.|-||||+---- +.+.+.+.+-.++|.+.+++|++++-
T Consensus 28 ~~~~ei~~~~~~~GTDaImIGGS~----gvt~~~~~~~v~~ik~~~~lPvilfP 77 (240)
T COG1646 28 EEADEIAEAAAEAGTDAIMIGGSD----GVTEENVDNVVEAIKERTDLPVILFP 77 (240)
T ss_pred cccHHHHHHHHHcCCCEEEECCcc----cccHHHHHHHHHHHHhhcCCCEEEec
Confidence 678889999999999999998532 24578899999999999999999974
No 241
>COG1448 TyrB Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]
Probab=53.93 E-value=3.8e+02 Score=31.20 Aligned_cols=113 Identities=17% Similarity=0.148 Sum_probs=59.0
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhcCCCCEEEEeCCC--CcCCccCHHHHHHHHh---CCCEEEEEeC-----------CHH
Q psy11975 549 PYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTF--VTNIDISVDTLVKLAH---HENIRGVKDT-----------DNI 612 (786)
Q Consensus 549 PyY~kps~S~eeLv~YFraIAeAtdLPIiLYNiP~--~TGv~LSpelL~rLAe---iPNVVGIKDS-----------Dl~ 612 (786)
|||...+ ..-++-....++..+-.-.|+|-|-+- .||.+++.+...+|++ --+++=+=|- |..
T Consensus 148 ~Yyd~~~-~~~df~~mla~L~~a~~~~vvLLH~CcHNPTG~D~t~~qW~~l~~~~~~r~lip~~D~AYQGF~~GleeDa~ 226 (396)
T COG1448 148 PYYDAET-KGLDFDGMLADLKTAPEGSVVLLHGCCHNPTGIDPTEEQWQELADLIKERGLIPFFDIAYQGFADGLEEDAY 226 (396)
T ss_pred ecccccc-ccccHHHHHHHHHhCCCCCEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCCeeeeehhhhhhccchHHHHH
Confidence 4554433 223334444445544456677766433 2899999998888773 2344433333 333
Q ss_pred HHHHHHhhcCCCCEEEEeCCc-chhhhhhccCCccccccccccccHHHHHHHH
Q psy11975 613 KLANMANQTKDLNFSVFAGSA-GYLLSGLLVGCAGGINALSAVLGGPICELYD 664 (786)
Q Consensus 613 ri~~ll~~~~~~df~Vf~G~D-elLL~aL~~GAdG~Isg~aN~~Pel~vaL~e 664 (786)
.++.++. ....+-|-.... .+-+..-+.||-.+++.-.....+..-++-.
T Consensus 227 ~lR~~a~--~~~~~lva~S~SKnfgLYgERVGa~~vva~~~~~a~~v~sqlk~ 277 (396)
T COG1448 227 ALRLFAE--VGPELLVASSFSKNFGLYGERVGALSVVAEDAEEADRVLSQLKA 277 (396)
T ss_pred HHHHHHH--hCCcEEEEehhhhhhhhhhhccceeEEEeCCHHHHHHHHHHHHH
Confidence 3444443 334444433333 3456666778777776554444444433333
No 242
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=53.89 E-value=27 Score=35.77 Aligned_cols=79 Identities=15% Similarity=0.162 Sum_probs=50.1
Q ss_pred CeEEEeCC--CCCHHHHHHHHHHHHHcCCCEEEEcCCCCCC-CCCCHHHHHHHHHHHHhcCCCCEEEEeCCCCcCCccCH
Q psy11975 515 ADLLKPQK--HTTTRATIDLTQKAAKAGANAALILCPYYFQ-KKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISV 591 (786)
Q Consensus 515 VPVIaGVG--a~ST~EAIELAr~Ae~aGADAVmViPPyY~k-ps~S~eeLv~YFraIAeAtdLPIiLYNiP~~TGv~LSp 591 (786)
+||.+.+. .....+++++++.++++|+|.+.+..-.... +. ...-.++++.|.+.+++||+. .|---++
T Consensus 124 ~~v~vk~r~~~~~~~~~~~~~~~l~~~Gvd~i~v~~~~~~~~~~--~~~~~~~~~~i~~~~~ipvi~------~Ggi~~~ 195 (231)
T cd02801 124 IPVTVKIRLGWDDEEETLELAKALEDAGASALTVHGRTREQRYS--GPADWDYIAEIKEAVSIPVIA------NGDIFSL 195 (231)
T ss_pred CCEEEEEeeccCCchHHHHHHHHHHHhCCCEEEECCCCHHHcCC--CCCCHHHHHHHHhCCCCeEEE------eCCCCCH
Confidence 45555432 2122589999999999999999887642110 11 111256677788888888775 2434467
Q ss_pred HHHHHHHhCC
Q psy11975 592 DTLVKLAHHE 601 (786)
Q Consensus 592 elL~rLAeiP 601 (786)
+.+.++.+..
T Consensus 196 ~d~~~~l~~~ 205 (231)
T cd02801 196 EDALRCLEQT 205 (231)
T ss_pred HHHHHHHHhc
Confidence 8888877543
No 243
>PRK09389 (R)-citramalate synthase; Provisional
Probab=53.81 E-value=4.4e+02 Score=31.21 Aligned_cols=283 Identities=16% Similarity=0.115 Sum_probs=0.0
Q ss_pred CCCCCCCHHHHHHHHHhCCCCCccCCCccccccCCC-CCCCCCCCC-------CccccCCCCeEEEeCCCCCHHHHHHHH
Q psy11975 462 HSSTSMPIQKRKSLLRKFPLWPELEPSTSELKRSDR-PMSVGPRSV-------RPSEREWQADLLKPQKHTTTRATIDLT 533 (786)
Q Consensus 462 gE~~sLT~dER~~Lle~~~~wve~~a~~~e~~~~~~-~~~~~~r~v-------~veevaGRVPVIaGVGa~ST~EAIELA 533 (786)
.++..|+.+|++++++. =+..+++. +.-+-..+= .+...+.+..|.+-+-+. .+-.
T Consensus 16 ~~g~~~s~e~K~~ia~~-----------L~~~Gv~~IE~G~p~~~~~d~e~v~~i~~~~~~~~i~a~~r~~-----~~di 79 (488)
T PRK09389 16 TPGVSLTPEEKLEIARK-----------LDELGVDVIEAGSAITSEGEREAIKAVTDEGLNAEICSFARAV-----KVDI 79 (488)
T ss_pred CCCCCcCHHHHHHHHHH-----------HHHcCCCEEEEeCCcCCHHHHHHHHHHHhcCCCcEEEeecccC-----HHHH
Q ss_pred HHHHHcCCCEEEEcCCCC-----CCCCCCHHHHHHHHHHHHhcC-CCCEEEEeCCCCcCCccCHHHHHHHH-----hCCC
Q psy11975 534 QKAAKAGANAALILCPYY-----FQKKMTEDLIYEHFISVADNS-PIPVIIYNNTFVTNIDISVDTLVKLA-----HHEN 602 (786)
Q Consensus 534 r~Ae~aGADAVmViPPyY-----~kps~S~eeLv~YFraIAeAt-dLPIiLYNiP~~TGv~LSpelL~rLA-----eiPN 602 (786)
+.|.++|++.|-+..|.. .+...+.+++++-..+..+.+ ..-+.+.-.+. .+...+++.+.+++ .=+.
T Consensus 80 ~~a~~~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~g~~v~~~~e-d~~r~~~~~l~~~~~~~~~~Ga~ 158 (488)
T PRK09389 80 DAALECDVDSVHLVVPTSDLHIEYKLKKTREEVLETAVEAVEYAKDHGLIVELSGE-DASRADLDFLKELYKAGIEAGAD 158 (488)
T ss_pred HHHHhCCcCEEEEEEccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCEEEEEEe-eCCCCCHHHHHHHHHHHHhCCCC
Q ss_pred EEEEEeC-------CHHHHHHHHhhcCCCCEEEEeCCc-----chhhhhhccCC---ccccccccccccHHHHHHHHHHH
Q psy11975 603 IRGVKDT-------DNIKLANMANQTKDLNFSVFAGSA-----GYLLSGLLVGC---AGGINALSAVLGGPICELYDLAK 667 (786)
Q Consensus 603 VVGIKDS-------Dl~ri~~ll~~~~~~df~Vf~G~D-----elLL~aL~~GA---dG~Isg~aN~~Pel~vaL~eA~~ 667 (786)
.+.++|| ++.++-+.+++..+-.+.+-+=+| ...+.++.+|+ +|.+.|++ +..=
T Consensus 159 ~i~l~DTvG~~~P~~~~~lv~~l~~~~~v~l~~H~HND~GlAvANalaAv~aGa~~Vd~Ti~GiG-----------ERaG 227 (488)
T PRK09389 159 RICFCDTVGILTPEKTYELFKRLSELVKGPVSIHCHNDFGLAVANTLAALAAGADQVHVTINGIG-----------ERAG 227 (488)
T ss_pred EEEEecCCCCcCHHHHHHHHHHHHhhcCCeEEEEecCCccHHHHHHHHHHHcCCCEEEEEccccc-----------cccc
Q ss_pred cCCHHHHHHHHHHhhhhHHHHHhhhhccccCHHHHHHHHHHcCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCCCccch
Q psy11975 668 AGKWEEAMKLQHRLVKPDVTVRNVLLMKEMGVPGVRAAMELYGYYGGRSRRPLPAALKPGGAEKIKQVLTEAGFLVPGVR 747 (786)
Q Consensus 668 aGD~eeAreLQ~rL~pLi~~l~~~~~~~~~~ia~lKaaL~lrGI~~G~vR~PL~~pLseeekaeL~~~L~~lGll~~~~~ 747 (786)
+=+.++.......+..+..-+ .........+++.+..|++. +.+.|+. .+..=.-+.-+..-|++....
T Consensus 228 Na~lE~lv~~L~~~~g~~~~i-----dl~~l~~~s~~v~~~~~~~v-~~~~piv----G~~aF~h~sGiH~dgi~k~~~- 296 (488)
T PRK09389 228 NASLEEVVMALKHLYDVETGI-----KLEELYELSRLVSRLTGIPV-PPNKAIV----GENAFAHESGIHVDGLLKDTE- 296 (488)
T ss_pred CccHHHHHHHHHhhcCCCCCc-----CHHHHHHHHHHHHHHhCCCC-CCCCCcc----cHhHHHhcchhhHHHHhCCcc-
Q ss_pred hchhhhccccCccCCCCccccCCCcHHHHHHHHhhcCC
Q psy11975 748 AAMELYGYYGGRSRRPLPAALKPGGAEKIKQVLTEAGF 785 (786)
Q Consensus 748 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 (786)
---.|+-..-+|.|+-+ -=|--|..-|+..|.+.|+
T Consensus 297 ~Ye~~~P~~vG~~~~~~--lg~~SG~~~v~~~l~~~g~ 332 (488)
T PRK09389 297 TYEPITPETVGRERRIV--LGKHAGRAALKAALKEMGI 332 (488)
T ss_pred cCCCCCHHHcCCccccc--ccccccHHHHHHHHHHcCC
No 244
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=53.71 E-value=46 Score=36.52 Aligned_cols=78 Identities=15% Similarity=0.112 Sum_probs=49.2
Q ss_pred CeEEEeC--CC-CCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHhcCCCCEEEEeCCCCcCCccCH
Q psy11975 515 ADLLKPQ--KH-TTTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISV 591 (786)
Q Consensus 515 VPVIaGV--Ga-~ST~EAIELAr~Ae~aGADAVmViPPyY~kps~S~eeLv~YFraIAeAtdLPIiLYNiP~~TGv~LSp 591 (786)
+||.+-+ |. ....+.+++++.++++|+|++.+..-.- ....+.....++.+.|.+++++||+. | |--.++
T Consensus 132 ~pv~vKir~g~~~~~~~~~~~a~~l~~~G~d~i~vh~r~~-~~~~~~~~~~~~i~~i~~~~~ipvi~-n-----GgI~~~ 204 (319)
T TIGR00737 132 IPVTVKIRIGWDDAHINAVEAARIAEDAGAQAVTLHGRTR-AQGYSGEANWDIIARVKQAVRIPVIG-N-----GDIFSP 204 (319)
T ss_pred CCEEEEEEcccCCCcchHHHHHHHHHHhCCCEEEEEcccc-cccCCCchhHHHHHHHHHcCCCcEEE-e-----CCCCCH
Confidence 5676643 21 2234678999999999999998864210 00001123468888888888888763 2 444567
Q ss_pred HHHHHHHh
Q psy11975 592 DTLVKLAH 599 (786)
Q Consensus 592 elL~rLAe 599 (786)
+.+.++.+
T Consensus 205 ~da~~~l~ 212 (319)
T TIGR00737 205 EDAKAMLE 212 (319)
T ss_pred HHHHHHHH
Confidence 77777654
No 245
>PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane. It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions.
Probab=53.62 E-value=71 Score=34.74 Aligned_cols=77 Identities=17% Similarity=0.339 Sum_probs=53.7
Q ss_pred HHHHHH-HHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHhcCCCCEEEEeCCCCcCCccCHHHHHHHHh--CCCEEE--
Q psy11975 531 DLTQKA-AKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAH--HENIRG-- 605 (786)
Q Consensus 531 ELAr~A-e~aGADAVmViPPyY~kps~S~eeLv~YFraIAeAtdLPIiLYNiP~~TGv~LSpelL~rLAe--iPNVVG-- 605 (786)
+.++.| +..+|||+++.-+..-.+. +. +..+++-+.+++||++ |..++++.+.++.+ ..-|||
T Consensus 162 ~~~~~a~~~~~aDaviVtG~~TG~~~-~~----~~l~~vr~~~~~PVlv-------GSGvt~~Ni~~~l~~ADG~IVGS~ 229 (254)
T PF03437_consen 162 EAAKDAVERGGADAVIVTGKATGEPP-DP----EKLKRVREAVPVPVLV-------GSGVTPENIAEYLSYADGAIVGSY 229 (254)
T ss_pred HHHHHHHHhcCCCEEEECCcccCCCC-CH----HHHHHHHhcCCCCEEE-------ecCCCHHHHHHHHHhCCEEEEeee
Confidence 345555 6789999999998776554 23 3445555666688885 44577999999875 345665
Q ss_pred EEeC-------CHHHHHHHHh
Q psy11975 606 VKDT-------DNIKLANMAN 619 (786)
Q Consensus 606 IKDS-------Dl~ri~~ll~ 619 (786)
+|.. |.++++++++
T Consensus 230 ~K~~G~~~n~VD~~Rv~~fm~ 250 (254)
T PF03437_consen 230 FKKDGKWENPVDPERVRRFME 250 (254)
T ss_pred eeeCCEeCCcCCHHHHHHHHH
Confidence 7764 7788888876
No 246
>PRK08999 hypothetical protein; Provisional
Probab=53.57 E-value=53 Score=35.53 Aligned_cols=78 Identities=15% Similarity=0.209 Sum_probs=52.5
Q ss_pred EEEeCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCC--CCCCCCHHHHHHHHHHHHhcCCCCEEEEeCCCCcCCccCHHHH
Q psy11975 517 LLKPQKHTTTRATIDLTQKAAKAGANAALILCPYY--FQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTL 594 (786)
Q Consensus 517 VIaGVGa~ST~EAIELAr~Ae~aGADAVmViPPyY--~kps~S~eeLv~YFraIAeAtdLPIiLYNiP~~TGv~LSpelL 594 (786)
.++|+++.+.+++ +.|.+.|+|.+.+.|-|- .|+. .+.-=.+.++.+++.+++||+.- -| |+++.+
T Consensus 227 ~~ig~S~h~~~~~----~~a~~~~~dyi~~gpvf~t~tk~~-~~~~g~~~~~~~~~~~~~Pv~Ai-----GG--I~~~~~ 294 (312)
T PRK08999 227 RWVAASCHDAEEL----ARAQRLGVDFAVLSPVQPTASHPG-AAPLGWEGFAALIAGVPLPVYAL-----GG--LGPGDL 294 (312)
T ss_pred CEEEEecCCHHHH----HHHHhcCCCEEEECCCcCCCCCCC-CCCCCHHHHHHHHHhCCCCEEEE-----CC--CCHHHH
Confidence 5789999888764 556678999998886332 1221 11111577888888888998865 23 688898
Q ss_pred HHHHh--CCCEEEE
Q psy11975 595 VKLAH--HENIRGV 606 (786)
Q Consensus 595 ~rLAe--iPNVVGI 606 (786)
.++.+ ...|+.+
T Consensus 295 ~~~~~~g~~gva~i 308 (312)
T PRK08999 295 EEAREHGAQGIAGI 308 (312)
T ss_pred HHHHHhCCCEEEEE
Confidence 88875 4556554
No 247
>PRK12755 phospho-2-dehydro-3-deoxyheptonate aldolase; Provisional
Probab=53.44 E-value=1.8e+02 Score=33.20 Aligned_cols=104 Identities=9% Similarity=-0.000 Sum_probs=66.8
Q ss_pred CCCCeEEEeC-CCCCHHHHHHHHHHHHHcCCC----EEEEcCCCCCCCCCC-----------------HHHHHHHHHHH-
Q psy11975 512 EWQADLLKPQ-KHTTTRATIDLTQKAAKAGAN----AALILCPYYFQKKMT-----------------EDLIYEHFISV- 568 (786)
Q Consensus 512 aGRVPVIaGV-Ga~ST~EAIELAr~Ae~aGAD----AVmViPPyY~kps~S-----------------~eeLv~YFraI- 568 (786)
+.|+-||+|= +-.+.+.+++.|+..+++|.. .++++==|++||..+ -++=+.+.+.+
T Consensus 52 d~rllvI~GPCSI~d~~~aleyA~~Lk~l~~~~~d~l~ivmR~y~eKPRT~~gwkGli~DP~ldgs~~i~~GL~~~R~ll 131 (353)
T PRK12755 52 DDRLLVVVGPCSIHDPEAALEYARRLKALADELSDRLLIVMRVYFEKPRTTVGWKGLINDPHLDGSFDIEEGLRIARKLL 131 (353)
T ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhhhhcceEEEEEeccccCCCCcCCcCCCCCccccccccHHHHHHHHHHHH
Confidence 4577888874 457889999999999999875 455666677777422 13334454444
Q ss_pred --HhcCCCCEEE-----------------EeCCCCcCCccCHHHHHHHH-hCCCEEEEEeC---CHHHHHHHH
Q psy11975 569 --ADNSPIPVII-----------------YNNTFVTNIDISVDTLVKLA-HHENIRGVKDT---DNIKLANMA 618 (786)
Q Consensus 569 --AeAtdLPIiL-----------------YNiP~~TGv~LSpelL~rLA-eiPNVVGIKDS---Dl~ri~~ll 618 (786)
....++|+.- --+.++ ...-..+.+++ ...--||+|.. ++..+...+
T Consensus 132 ~~~~e~Glp~atE~ld~~~~~y~~Dlvs~~aIGAR---t~esq~hre~aSgl~~PVgfKngt~g~i~~al~Ai 201 (353)
T PRK12755 132 LDLVELGLPLATEALDPISPQYLGDLISWGAIGAR---TTESQTHREMASGLSMPVGFKNGTDGSLKVAINAI 201 (353)
T ss_pred HHHHHhCCCEEEEecCcccHHHHHhhhhheeeccc---hhcCHHHHHHhcCCCCeeEecCCCCCCHHHHHHHH
Confidence 4556888862 112222 22335566666 68899999999 665555444
No 248
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=53.38 E-value=45 Score=32.01 Aligned_cols=65 Identities=15% Similarity=0.093 Sum_probs=48.3
Q ss_pred CCeEEEeCCCCCHHHHHH-HHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHhcC-CCCEEEEeCC
Q psy11975 514 QADLLKPQKHTTTRATID-LTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNS-PIPVIIYNNT 582 (786)
Q Consensus 514 RVPVIaGVGa~ST~EAIE-LAr~Ae~aGADAVmViPPyY~kps~S~eeLv~YFraIAeAt-dLPIiLYNiP 582 (786)
.+|+++++..+...+.+. .++.+.++|+|+|.+..-..+. .+.+.++.+++.+.. ++|+++.-.+
T Consensus 57 ~~~~~~~~~~~~~~~~~~~~a~~~~~~g~d~v~l~~~~~~~----~~~~~~~~~~i~~~~~~~~v~~~~~~ 123 (200)
T cd04722 57 DLPLGVQLAINDAAAAVDIAAAAARAAGADGVEIHGAVGYL----AREDLELIRELREAVPDVKVVVKLSP 123 (200)
T ss_pred CCcEEEEEccCCchhhhhHHHHHHHHcCCCEEEEeccCCcH----HHHHHHHHHHHHHhcCCceEEEEECC
Confidence 468999888877666554 3789999999999887643221 456778888888877 7888888654
No 249
>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain. LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=53.23 E-value=3.9e+02 Score=30.41 Aligned_cols=144 Identities=20% Similarity=0.167 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHH--------------------------------------HHHHHH
Q psy11975 527 RATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIY--------------------------------------EHFISV 568 (786)
Q Consensus 527 ~EAIELAr~Ae~aGADAVmViPPyY~kps~S~eeLv--------------------------------------~YFraI 568 (786)
+-+.++.+.|+++|+.++++.--.-.... .+.++. +..+.|
T Consensus 138 ~~~~~ll~rA~~aG~~alvlTvD~p~~g~-R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 216 (351)
T cd04737 138 GFNRSLLDRAKAAGAKAIILTADATVGGN-READIRNKFQFPFGMPNLNHFSEGTGKGKGISEIYAAAKQKLSPADIEFI 216 (351)
T ss_pred HHHHHHHHHHHHcCCCEEEEecCCCCCCc-chHHHHhcCCCCcccchhhhhccccccCcchhhhhhhccCCCCHHHHHHH
Q ss_pred HhcCCCCEEEEeCCCCcCCccCHHHHHHHHhCCCEEEEEe---------C---CHHHHHHHHhhcCCCCEEEEeCCc---
Q psy11975 569 ADNSPIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKD---------T---DNIKLANMANQTKDLNFSVFAGSA--- 633 (786)
Q Consensus 569 AeAtdLPIiLYNiP~~TGv~LSpelL~rLAeiPNVVGIKD---------S---Dl~ri~~ll~~~~~~df~Vf~G~D--- 633 (786)
.+.+++||++= |+ ++++....+.+. ++-||-- . .+..+.++.+ ..++++.|+.-.+
T Consensus 217 r~~~~~PvivK------gv-~~~~dA~~a~~~-G~d~I~vsnhGGr~ld~~~~~~~~l~~i~~-a~~~~i~vi~dGGIr~ 287 (351)
T cd04737 217 AKISGLPVIVK------GI-QSPEDADVAINA-GADGIWVSNHGGRQLDGGPASFDSLPEIAE-AVNHRVPIIFDSGVRR 287 (351)
T ss_pred HHHhCCcEEEe------cC-CCHHHHHHHHHc-CCCEEEEeCCCCccCCCCchHHHHHHHHHH-HhCCCCeEEEECCCCC
Q ss_pred -chhhhhhccCCccccccccccccHHHHHHHHHHHcCCHHHHHHHHHHhhhhHHHH
Q psy11975 634 -GYLLSGLLVGCAGGINALSAVLGGPICELYDLAKAGKWEEAMKLQHRLVKPDVTV 688 (786)
Q Consensus 634 -elLL~aL~~GAdG~Isg~aN~~Pel~vaL~eA~~aGD~eeAreLQ~rL~pLi~~l 688 (786)
...+.+|++|+++++.+.. -+|.....|..--...++.....+...+
T Consensus 288 g~Di~kaLalGA~~V~iGr~--------~l~~la~~G~~gv~~~l~~l~~El~~~m 335 (351)
T cd04737 288 GEHVFKALASGADAVAVGRP--------VLYGLALGGAQGVASVLEHLNKELKIVM 335 (351)
T ss_pred HHHHHHHHHcCCCEEEECHH--------HHHHHhhchHHHHHHHHHHHHHHHHHHH
No 250
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=53.07 E-value=53 Score=36.37 Aligned_cols=71 Identities=18% Similarity=0.192 Sum_probs=46.4
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEcCC----CCCCCCCCHHHHHHHHHHHHhcCCCCEEEEeCCCCcCCccCHHHHHHHHhC
Q psy11975 525 TTRATIDLTQKAAKAGANAALILCP----YYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHH 600 (786)
Q Consensus 525 ST~EAIELAr~Ae~aGADAVmViPP----yY~kps~S~eeLv~YFraIAeAtdLPIiLYNiP~~TGv~LSpelL~rLAei 600 (786)
+..+++++++.++++|+|++.+.+= .|... .-.+++++|.+++++||+. | |--.+++.+.++.+.
T Consensus 147 ~~~~~~~~a~~le~~G~d~i~vh~rt~~~~~~G~-----a~~~~i~~ik~~~~iPVI~-n-----GgI~s~~da~~~l~~ 215 (321)
T PRK10415 147 EHRNCVEIAQLAEDCGIQALTIHGRTRACLFNGE-----AEYDSIRAVKQKVSIPVIA-N-----GDITDPLKARAVLDY 215 (321)
T ss_pred CcchHHHHHHHHHHhCCCEEEEecCccccccCCC-----cChHHHHHHHHhcCCcEEE-e-----CCCCCHHHHHHHHhc
Confidence 4458999999999999999988742 22111 1256777888888888654 2 434567777666544
Q ss_pred CCEEEE
Q psy11975 601 ENIRGV 606 (786)
Q Consensus 601 PNVVGI 606 (786)
.++-|+
T Consensus 216 ~gadgV 221 (321)
T PRK10415 216 TGADAL 221 (321)
T ss_pred cCCCEE
Confidence 333333
No 251
>PRK06252 methylcobalamin:coenzyme M methyltransferase; Validated
Probab=53.01 E-value=1.7e+02 Score=32.07 Aligned_cols=99 Identities=13% Similarity=0.085 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHH----HHHHHHHHhcCCC-CEEEEeCCCCcCCccCHHHHHHHHhC
Q psy11975 526 TRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLI----YEHFISVADNSPI-PVIIYNNTFVTNIDISVDTLVKLAHH 600 (786)
Q Consensus 526 T~EAIELAr~Ae~aGADAVmViPPyY~kps~S~eeL----v~YFraIAeAtdL-PIiLYNiP~~TGv~LSpelL~rLAei 600 (786)
++-.++.++...++|||+|.+.-|.-...-++++.. ..|+++|.+...- +.+++.+ +.+ ...+..+.+.
T Consensus 179 ~~~~~~~~~~~~~aGad~I~i~d~~a~~~~lsp~~f~ef~~p~~~~i~~~i~~~~~ilH~c-G~~-----~~~l~~~~~~ 252 (339)
T PRK06252 179 TDFCIEYAKAQLEAGADVICIADPSASPELLGPKMFEEFVLPYLNKIIDEVKGLPTILHIC-GDL-----TSILEEMADC 252 (339)
T ss_pred HHHHHHHHHHHHHcCCCEEEeCCCCccccccCHHHHHHHHHHHHHHHHHHhccCCcEEEEC-CCc-----hHHHHHHHhc
Confidence 466788888889999999999888542111235544 4566888887743 5555554 221 3456666654
Q ss_pred C-CEEEEEeC-CHHHHHHHHhhcCCCCEEEEeCCcc
Q psy11975 601 E-NIRGVKDT-DNIKLANMANQTKDLNFSVFAGSAG 634 (786)
Q Consensus 601 P-NVVGIKDS-Dl~ri~~ll~~~~~~df~Vf~G~De 634 (786)
+ ++..+=.. |+....+.+ +++..++.+.|.
T Consensus 253 g~d~~~~d~~~dl~~~~~~~----g~~~~i~Gnidp 284 (339)
T PRK06252 253 GFDGISIDEKVDVKTAKENV----GDRAALIGNVST 284 (339)
T ss_pred CCCeeccCCCCCHHHHHHHh----CCCeEEEeccCc
Confidence 2 45554444 665544332 344555544443
No 252
>TIGR00486 YbgI_SA1388 dinuclear metal center protein, YbgI/SA1388 family. The characterization of this family of uncharacterized proteins as orthologous is tentative. Members are found in all three domains of life. Several members (from Bacillus subtilis, Listeria monocytogenes, and Mycobacterium tuberculosis - all classified as Firmicutes within the Eubacteria) share a long insert relative to other members.
Probab=52.80 E-value=1.1e+02 Score=32.56 Aligned_cols=53 Identities=9% Similarity=0.185 Sum_probs=33.8
Q ss_pred HHHHHHHHHcCCCEEEEcCCCCCCCC--CCHHHHHHHHHHHHhcCCCCEEEEeCCC
Q psy11975 530 IDLTQKAAKAGANAALILCPYYFQKK--MTEDLIYEHFISVADNSPIPVIIYNNTF 583 (786)
Q Consensus 530 IELAr~Ae~aGADAVmViPPyY~kps--~S~eeLv~YFraIAeAtdLPIiLYNiP~ 583 (786)
-+..+.|.+.|||.++.-=|.+|++- ...+.....++.+. .-++.||-+|-|-
T Consensus 47 ~~vi~~Ai~~~~dlIitHHP~~f~~~~~~~~~~~~~~~~~li-~~~I~vy~~Ht~l 101 (249)
T TIGR00486 47 ESVADEAVRLGADLIITHHPLIWKPLKRLIRGIKPGRLKILL-QNDISLYSAHTNL 101 (249)
T ss_pred HHHHHHHHHCCCCEEEEcCccccCCcccccCCCHHHHHHHHH-HCCCeEEEeecch
Confidence 34445677789999999999998762 11122222233322 3479999998765
No 253
>PRK07315 fructose-bisphosphate aldolase; Provisional
Probab=52.56 E-value=44 Score=36.86 Aligned_cols=116 Identities=11% Similarity=0.164 Sum_probs=0.0
Q ss_pred ccccccceeeecCCCCCCCHHHHHHHHHhCCCCCccCCCccccccCCCCCCCCCCCCCccccCCCCeE----EEeCCC-C
Q psy11975 450 VSSVSFSHYFKAHSSTSMPIQKRKSLLRKFPLWPELEPSTSELKRSDRPMSVGPRSVRPSEREWQADL----LKPQKH-T 524 (786)
Q Consensus 450 ~~~v~~~Gvf~agE~~sLT~dER~~Lle~~~~wve~~a~~~e~~~~~~~~~~~~r~v~veevaGRVPV----IaGVGa-~ 524 (786)
+++|.+.| ..|+.+|..++++. +++.+. ++-+.+|.--|.+.= +.|.+. +
T Consensus 100 ftSVm~d~-------S~l~~eEni~~t~~---v~~~a~---------------~~gv~vE~ElG~i~g~ed~~~g~s~~t 154 (293)
T PRK07315 100 YTSIMFDG-------SHLPVEENLKLAKE---VVEKAH---------------AKGISVEAEVGTIGGEEDGIIGKGELA 154 (293)
T ss_pred CCEEEEcC-------CCCCHHHHHHHHHH---HHHHHH---------------HcCCEEEEecCcccCcCccccCccCCC
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEcC-CC---CCCCCCCHHHHHHHHHHHHhcC-CCCEEEEeCCCCcCCccCHHHHHHHHh
Q psy11975 525 TTRATIDLTQKAAKAGANAALILC-PY---YFQKKMTEDLIYEHFISVADNS-PIPVIIYNNTFVTNIDISVDTLVKLAH 599 (786)
Q Consensus 525 ST~EAIELAr~Ae~aGADAVmViP-Py---Y~kps~S~eeLv~YFraIAeAt-dLPIiLYNiP~~TGv~LSpelL~rLAe 599 (786)
+.+++.+.. +.|+|++.+.- |. |...+ ..-=++..++|.+++ ++|+++. -|..++.+.+.++.+
T Consensus 155 ~peea~~f~----~tgvD~LAv~iG~vHG~y~t~~--k~l~~e~L~~i~~~~~~iPlVlh-----GGSGi~~e~~~~~i~ 223 (293)
T PRK07315 155 PIEDAKAMV----ETGIDFLAAGIGNIHGPYPENW--EGLDLDHLEKLTEAVPGFPIVLH-----GGSGIPDDQIQEAIK 223 (293)
T ss_pred CHHHHHHHH----HcCCCEEeeccccccccCCCCC--CcCCHHHHHHHHHhccCCCEEEE-----CCCCCCHHHHHHHHH
Q ss_pred CC
Q psy11975 600 HE 601 (786)
Q Consensus 600 iP 601 (786)
..
T Consensus 224 ~G 225 (293)
T PRK07315 224 LG 225 (293)
T ss_pred cC
No 254
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=52.50 E-value=67 Score=36.26 Aligned_cols=86 Identities=10% Similarity=0.005 Sum_probs=58.1
Q ss_pred CCCHHH-HHHHHHHHHHcCCCEEEEcCCCCCC-CCCCHHHHHHHHHHHHhcCCCCEEEEeCCCCcCCccCHHHHHHHHhC
Q psy11975 523 HTTTRA-TIDLTQKAAKAGANAALILCPYYFQ-KKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHH 600 (786)
Q Consensus 523 a~ST~E-AIELAr~Ae~aGADAVmViPPyY~k-ps~S~eeLv~YFraIAeAtdLPIiLYNiP~~TGv~LSpelL~rLAei 600 (786)
+.+.+| ++++++..++.|+|.+-+..+.+.. .. -...+.+.|-+++++||+.- |. ++++...++.+-
T Consensus 244 G~~~~e~~~~~~~~L~~~giD~i~vs~~~~~~~~~----~~~~~~~~ik~~~~~pv~~~------G~-~~~~~ae~~i~~ 312 (362)
T PRK10605 244 GPNEEADALYLIEQLGKRGIAYLHMSEPDWAGGEP----YSDAFREKVRARFHGVIIGA------GA-YTAEKAETLIGK 312 (362)
T ss_pred CCCHHHHHHHHHHHHHHcCCCEEEeccccccCCcc----ccHHHHHHHHHHCCCCEEEe------CC-CCHHHHHHHHHc
Confidence 467788 8999999999999999888764421 11 12344567777788887743 33 478888888754
Q ss_pred C--CEEEEEeC---CHHHHHHHHh
Q psy11975 601 E--NIRGVKDT---DNIKLANMAN 619 (786)
Q Consensus 601 P--NVVGIKDS---Dl~ri~~ll~ 619 (786)
. .+|++==. |.+-..++.+
T Consensus 313 G~~D~V~~gR~~iadPd~~~k~~~ 336 (362)
T PRK10605 313 GLIDAVAFGRDYIANPDLVARLQR 336 (362)
T ss_pred CCCCEEEECHHhhhCccHHHHHhc
Confidence 3 45555444 7666666654
No 255
>PF02548 Pantoate_transf: Ketopantoate hydroxymethyltransferase; InterPro: IPR003700 The panB gene from Escherichia coli encodes the first enzyme of the pantothenate biosynthesis pathway, ketopantoate hydroxymethyltransferase (KPHMT) 2.1.2.11 from EC. Fungal ketopantoate hydroxymethyltransferase is essential for the biosynthesis of coenzyme A, while the pathway intermediate 4'-phosphopantetheine is required for penicillin production [].; GO: 0003864 3-methyl-2-oxobutanoate hydroxymethyltransferase activity, 0015940 pantothenate biosynthetic process; PDB: 3VAV_G 1M3U_A 3EZ4_J 1O68_C 1O66_A 1OY0_D.
Probab=51.62 E-value=1.6e+02 Score=32.32 Aligned_cols=103 Identities=16% Similarity=0.134 Sum_probs=62.7
Q ss_pred EEeCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCC-------CCCCCCHHHHHHHHHHHHhcCCCCEEEEeCCCCcCCccC
Q psy11975 518 LKPQKHTTTRATIDLTQKAAKAGANAALILCPYY-------FQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDIS 590 (786)
Q Consensus 518 IaGVGa~ST~EAIELAr~Ae~aGADAVmViPPyY-------~kps~S~eeLv~YFraIAeAtdLPIiLYNiP~~TGv~LS 590 (786)
|+.+.+.+. -.|+.+.++|+|.++|--..- .....+-|+++.|.+.|.+.++-++++-|.|-.+ +..+
T Consensus 18 i~~lTaYD~----~~A~~~d~agvD~iLVGDSlgmv~~G~~sT~~vtld~mi~h~~aV~Rga~~~~vv~DmPf~s-y~~s 92 (261)
T PF02548_consen 18 IVMLTAYDY----PSARIADEAGVDIILVGDSLGMVVLGYDSTLPVTLDEMIYHTKAVRRGAPNAFVVADMPFGS-YQAS 92 (261)
T ss_dssp EEEEE--SH----HHHHHHHHTT-SEEEE-TTHHHHTT--SSSTT--HHHHHHHHHHHHHH-TSSEEEEE--TTS-STSS
T ss_pred EEEEecccH----HHHHHHHHcCCCEEEeCCcHHHheeCCCCCcCcCHHHHHHHHHHHHhcCCCceEEecCCccc-ccCC
Confidence 334444444 567889999999999977531 1122579999999999999999999999999643 3366
Q ss_pred HHHHH----HHHhCCCEEEEEeC-C---HHHHHHHHhhcCCCCEEEE
Q psy11975 591 VDTLV----KLAHHENIRGVKDT-D---NIKLANMANQTKDLNFSVF 629 (786)
Q Consensus 591 pelL~----rLAeiPNVVGIKDS-D---l~ri~~ll~~~~~~df~Vf 629 (786)
++.-. +|.+.-+.-+||.+ . .+.+..+.+ ..+.|+
T Consensus 93 ~e~av~nA~rl~ke~GadaVKlEGg~~~~~~i~~l~~----~GIPV~ 135 (261)
T PF02548_consen 93 PEQAVRNAGRLMKEAGADAVKLEGGAEIAETIKALVD----AGIPVM 135 (261)
T ss_dssp HHHHHHHHHHHHHTTT-SEEEEEBSGGGHHHHHHHHH----TT--EE
T ss_pred HHHHHHHHHHHHHhcCCCEEEeccchhHHHHHHHHHH----CCCcEE
Confidence 66544 44455788899998 2 455555544 345554
No 256
>PRK14057 epimerase; Provisional
Probab=51.42 E-value=1.5e+02 Score=32.27 Aligned_cols=112 Identities=12% Similarity=0.019 Sum_probs=67.0
Q ss_pred eEEEeCCCCCHHHHHHHHHHHHHcCC---------CEEEEcCCCCCCCCCCHHHHHHHHHHHHhcCCCCEEEEeCCCCcC
Q psy11975 516 DLLKPQKHTTTRATIDLTQKAAKAGA---------NAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTN 586 (786)
Q Consensus 516 PVIaGVGa~ST~EAIELAr~Ae~aGA---------DAVmViPPyY~kps~S~eeLv~YFraIAeAtdLPIiLYNiP~~TG 586 (786)
-|.+++=+. ....+..+...+.|+ .+-+++.|.- | .+.+. .+.+.++.=+++=-.|+..|
T Consensus 101 ~It~H~Ea~--~~~~~~l~~Ir~~G~k~~~~~~~~kaGlAlnP~T--p---~e~i~----~~l~~vD~VLvMtV~PGfgG 169 (254)
T PRK14057 101 CITLQAEGD--IHLHHTLSWLGQQTVPVIGGEMPVIRGISLCPAT--P---LDVII----PILSDVEVIQLLAVNPGYGS 169 (254)
T ss_pred EEEEeeccc--cCHHHHHHHHHHcCCCcccccccceeEEEECCCC--C---HHHHH----HHHHhCCEEEEEEECCCCCc
Confidence 356676642 233445555566676 3666666641 1 33333 33345565566667899999
Q ss_pred CccCHHHHHHHHhCCCEEEEEeCCHHHHHHHHhhcCCCCE--EEEeCCc-chhhhhhccCCccccccccc
Q psy11975 587 IDISVDTLVKLAHHENIRGVKDTDNIKLANMANQTKDLNF--SVFAGSA-GYLLSGLLVGCAGGINALSA 653 (786)
Q Consensus 587 v~LSpelL~rLAeiPNVVGIKDSDl~ri~~ll~~~~~~df--~Vf~G~D-elLL~aL~~GAdG~Isg~aN 653 (786)
..+-++.+.++ .++++++.+ .+.++ .|=.|-. +.+-....+|++.++.|.+-
T Consensus 170 Q~Fi~~~l~KI--------------~~lr~~~~~-~~~~~~IeVDGGI~~~ti~~l~~aGad~~V~GSal 224 (254)
T PRK14057 170 KMRSSDLHERV--------------AQLLCLLGD-KREGKIIVIDGSLTQDQLPSLIAQGIDRVVSGSAL 224 (254)
T ss_pred hhccHHHHHHH--------------HHHHHHHHh-cCCCceEEEECCCCHHHHHHHHHCCCCEEEEChHh
Confidence 99999998888 444555542 23333 3333333 34556778999999999653
No 257
>PLN02979 glycolate oxidase
Probab=51.34 E-value=1.3e+02 Score=34.61 Aligned_cols=29 Identities=17% Similarity=0.109 Sum_probs=23.6
Q ss_pred CCeEEE-eCCCCCHHHHHHHHHHHHHcCCCEEEEcC
Q psy11975 514 QADLLK-PQKHTTTRATIDLTQKAAKAGANAALILC 548 (786)
Q Consensus 514 RVPVIa-GVGa~ST~EAIELAr~Ae~aGADAVmViP 548 (786)
++|||+ ||.. .+-|+.|.++|+|+|.|..
T Consensus 223 ~~PvivKgV~~------~~dA~~a~~~Gvd~I~Vsn 252 (366)
T PLN02979 223 KLPILVKGVLT------GEDARIAIQAGAAGIIVSN 252 (366)
T ss_pred CCCEEeecCCC------HHHHHHHHhcCCCEEEECC
Confidence 578988 8853 5667789999999999886
No 258
>PRK12999 pyruvate carboxylase; Reviewed
Probab=51.27 E-value=6.7e+02 Score=33.03 Aligned_cols=119 Identities=17% Similarity=0.192 Sum_probs=69.5
Q ss_pred HHHHHHH-HHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHhcCCC---CEEEEe----CCCCcCCccCHHHHHHH
Q psy11975 526 TRATIDL-TQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPI---PVIIYN----NTFVTNIDISVDTLVKL 597 (786)
Q Consensus 526 T~EAIEL-Ar~Ae~aGADAVmViPPyY~kps~S~eeLv~YFraIAeAtdL---PIiLYN----iP~~TGv~LSpelL~rL 597 (786)
.++.++. .+.|.+.|+|.+-+..+. + .-+.+....+.+.++ +. ..+-|- .|.++ ..+++.+.++
T Consensus 625 p~~v~~~~i~~a~~~Gid~~rifd~l----n-d~~~~~~~i~~vk~~-g~~~~~~i~ytg~~~d~~~~--~~~~~~~~~~ 696 (1146)
T PRK12999 625 PDNVVRAFVREAAAAGIDVFRIFDSL----N-WVENMRVAIDAVRET-GKIAEAAICYTGDILDPARA--KYDLDYYVDL 696 (1146)
T ss_pred CchHHHHHHHHHHHcCCCEEEEeccC----C-hHHHHHHHHHHHHHc-CCeEEEEEEEEecCCCCCCC--CCCHHHHHHH
Confidence 3456665 899999999999887533 2 244455555555544 42 334455 34333 3567766666
Q ss_pred H----hC-CCEEEEEeC----CHHHHHHHHhh---cCCCCEEEEeCCcch------hhhhhccCCc---cccccccc
Q psy11975 598 A----HH-ENIRGVKDT----DNIKLANMANQ---TKDLNFSVFAGSAGY------LLSGLLVGCA---GGINALSA 653 (786)
Q Consensus 598 A----ei-PNVVGIKDS----Dl~ri~~ll~~---~~~~df~Vf~G~Del------LL~aL~~GAd---G~Isg~aN 653 (786)
+ +. -..++|||+ .+..+.+++.. ..+-.+. +-++|.. .+.++.+|++ +++++++.
T Consensus 697 a~~l~~~Ga~~i~ikDt~G~l~P~~~~~lv~~lk~~~~ipi~-~H~Hnt~Gla~an~laA~~aGad~vD~av~glg~ 772 (1146)
T PRK12999 697 AKELEKAGAHILAIKDMAGLLKPAAAYELVSALKEEVDLPIH-LHTHDTSGNGLATYLAAAEAGVDIVDVAVASMSG 772 (1146)
T ss_pred HHHHHHcCCCEEEECCccCCCCHHHHHHHHHHHHHHcCCeEE-EEeCCCCchHHHHHHHHHHhCCCEEEecchhhcC
Confidence 5 33 579999999 56666555442 1222233 4555532 4567788884 44544443
No 259
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=51.09 E-value=59 Score=32.98 Aligned_cols=72 Identities=14% Similarity=0.061 Sum_probs=47.7
Q ss_pred CCeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHhcC-CCCEEEEeCCCCcCCccCHH
Q psy11975 514 QADLLKPQKHTTTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNS-PIPVIIYNNTFVTNIDISVD 592 (786)
Q Consensus 514 RVPVIaGVGa~ST~EAIELAr~Ae~aGADAVmViPPyY~kps~S~eeLv~YFraIAeAt-dLPIiLYNiP~~TGv~LSpe 592 (786)
+.++|+|+. + .+.++.|.++|||.+.+.| .+ .. ..+|++.+.... ++|++. .| .++++
T Consensus 97 ~~~~i~gv~--t----~~e~~~A~~~Gad~i~~~p-----~~--~~-g~~~~~~l~~~~~~~p~~a------~G-GI~~~ 155 (190)
T cd00452 97 GIPLLPGVA--T----PTEIMQALELGADIVKLFP-----AE--AV-GPAYIKALKGPFPQVRFMP------TG-GVSLD 155 (190)
T ss_pred CCcEECCcC--C----HHHHHHHHHCCCCEEEEcC-----Cc--cc-CHHHHHHHHhhCCCCeEEE------eC-CCCHH
Confidence 468888888 3 3456777889999999842 11 22 567888887665 367653 22 35788
Q ss_pred HHHHHHhCCCEEEEE
Q psy11975 593 TLVKLAHHENIRGVK 607 (786)
Q Consensus 593 lL~rLAeiPNVVGIK 607 (786)
.+.++++.+ +.++=
T Consensus 156 n~~~~~~~G-~~~v~ 169 (190)
T cd00452 156 NAAEWLAAG-VVAVG 169 (190)
T ss_pred HHHHHHHCC-CEEEE
Confidence 998888764 44443
No 260
>cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions.
Probab=51.08 E-value=1.5e+02 Score=31.34 Aligned_cols=103 Identities=14% Similarity=0.140 Sum_probs=67.6
Q ss_pred CCeEEEeC-CCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHhcCCCCEEEEeCCCCcCCccCHH
Q psy11975 514 QADLLKPQ-KHTTTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVD 592 (786)
Q Consensus 514 RVPVIaGV-Ga~ST~EAIELAr~Ae~aGADAVmViPPyY~kps~S~eeLv~YFraIAeAtdLPIiLYNiP~~TGv~LSpe 592 (786)
++.+.+-+ ++.+.++++++++..++.|++.+= -|+. +. -.+.+++|.+.+++||.+=. ...++.
T Consensus 129 ~~~l~vDan~~~~~~~a~~~~~~l~~~~i~~iE--eP~~--~~-----d~~~~~~l~~~~~ipia~dE------~~~~~~ 193 (265)
T cd03315 129 DAELRVDANRGWTPKQAIRALRALEDLGLDYVE--QPLP--AD-----DLEGRAALARATDTPIMADE------SAFTPH 193 (265)
T ss_pred CCEEEEeCCCCcCHHHHHHHHHHHHhcCCCEEE--CCCC--cc-----cHHHHHHHHhhCCCCEEECC------CCCCHH
Confidence 45566533 346799999999999999887653 3431 11 14667888888999988632 245678
Q ss_pred HHHHHHh--CCCEEEEEeC---CHHHHHHHHhhcCCCCEEEEeC
Q psy11975 593 TLVKLAH--HENIRGVKDT---DNIKLANMANQTKDLNFSVFAG 631 (786)
Q Consensus 593 lL~rLAe--iPNVVGIKDS---Dl~ri~~ll~~~~~~df~Vf~G 631 (786)
.+.++.+ .-.++.+|-+ .+....++.+....-++.+..|
T Consensus 194 ~~~~~i~~~~~d~v~~k~~~~GGi~~~~~~~~~A~~~gi~~~~~ 237 (265)
T cd03315 194 DAFRELALGAADAVNIKTAKTGGLTKAQRVLAVAEALGLPVMVG 237 (265)
T ss_pred HHHHHHHhCCCCEEEEecccccCHHHHHHHHHHHHHcCCcEEec
Confidence 8888763 5689999988 5655555543222335565554
No 261
>PF01208 URO-D: Uroporphyrinogen decarboxylase (URO-D); InterPro: IPR000257 Uroporphyrinogen decarboxylase (URO-D), the fifth enzyme of the haem biosynthetic pathway, catalyses the sequential decarboxylation of the four acetyl side chains of uroporphyrinogen to yield coproporphyrinogen []. URO-D deficiency is responsible for the human genetic diseases familial porphyria cutanea tarda (fPCT) and hepatoerythropoietic porphyria (HEP). The sequence of URO-D has been well conserved throughout evolution. The best conserved region is located in the N-terminal section; it contains a perfectly conserved hexapeptide. There are two arginine residues in this hexapeptide which could be involved in the binding, via salt bridges, to the carboxyl groups of the propionate side chains of the substrate. The crystal structure of human uroporphyrinogen decarboxylase shows it as comprised of a single domain containing a (beta/alpha)8-barrel with a deep active site cleft formed by loops at the C-terminal ends of the barrel strands. URO-D is a dimer in solution. Dimerisation juxtaposes the active site clefts of the monomers, suggesting a functionally important interaction between the catalytic centres [].; GO: 0004853 uroporphyrinogen decarboxylase activity, 0006779 porphyrin-containing compound biosynthetic process; PDB: 4EXQ_A 2INF_C 1J93_A 3GW0_A 1R3Q_A 1JPH_A 1JPI_A 3GVR_A 3GVW_A 3GVV_A ....
Probab=50.67 E-value=1.6e+02 Score=32.22 Aligned_cols=131 Identities=18% Similarity=0.146 Sum_probs=76.2
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHH----HHHHHHHHHhcC---CC-CEEEEeCCCCcCCccCHHHHHH
Q psy11975 525 TTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDL----IYEHFISVADNS---PI-PVIIYNNTFVTNIDISVDTLVK 596 (786)
Q Consensus 525 ST~EAIELAr~Ae~aGADAVmViPPyY~kps~S~ee----Lv~YFraIAeAt---dL-PIiLYNiP~~TGv~LSpelL~r 596 (786)
.++-.+++++...++|+|++.+.-..-.- ++++. +.-|+++|.+++ +. +++++.+... ...+..
T Consensus 180 ~~~~~~~~~~~~~~~G~d~i~~~d~~~~~--isp~~f~e~~~P~~k~i~~~i~~~g~~~~~lH~cG~~------~~~~~~ 251 (343)
T PF01208_consen 180 ITDFIIEYAKAQIEAGADGIFIFDSSGSL--ISPEMFEEFILPYLKKIIDAIKEAGKDPVILHICGNT------TPILDD 251 (343)
T ss_dssp HHHHHHHHHHHHHHTT-SEEEEEETTGGG--S-HHHHHHHTHHHHHHHHHHHHHHETE-EEEEETTHG-------GGHHH
T ss_pred HHHHHHHHHHHHHHhCCCcccccccccCC--CCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEECCch------HHHHHH
Confidence 35778888999999999999877621111 34554 355677787776 35 8888886431 236666
Q ss_pred HHhCC-CEEEEEeC-CHHHHHHHHhhcCCCCEEEEeCCcch-hh------------hhhc---cCCccccccccccc---
Q psy11975 597 LAHHE-NIRGVKDT-DNIKLANMANQTKDLNFSVFAGSAGY-LL------------SGLL---VGCAGGINALSAVL--- 655 (786)
Q Consensus 597 LAeiP-NVVGIKDS-Dl~ri~~ll~~~~~~df~Vf~G~Del-LL------------~aL~---~GAdG~Isg~aN~~--- 655 (786)
|++.+ .++.+-.. |+....+. .++++.++.|-|.. ++ ..+. .+..|+|.+.+|-+
T Consensus 252 l~~~g~d~~~~~~~~~~~~~~~~----~~~~~~l~Gni~~~~~l~gt~eei~~~v~~~i~~~~~~~~gfIl~~gc~ip~~ 327 (343)
T PF01208_consen 252 LADLGADVLSVDEKVDLAEAKRK----LGDKIVLMGNIDPVSLLFGTPEEIEEEVKRLIEEGLAGGGGFILSPGCGIPPD 327 (343)
T ss_dssp HHTSS-SEEEE-TTS-HHHHHHH----HTTSSEEEEEB-G-GGGGS-HHHHHHHHHHHHHHTHCTSSSEEBEBSS---TT
T ss_pred HHhcCCCEEEEcCCCCHHHHHHH----hCCCeEEECCCCccccccCCHHHHHHHHHHHHHHhcCCCCCEEEeCCCcCCCC
Confidence 66653 55666444 77544432 24677777777762 22 2333 35778888888743
Q ss_pred --cHHHHHHHHHHH
Q psy11975 656 --GGPICELYDLAK 667 (786)
Q Consensus 656 --Pel~vaL~eA~~ 667 (786)
++-+.+++++++
T Consensus 328 ~p~eni~a~~~a~~ 341 (343)
T PF01208_consen 328 TPPENIKAMVEAVK 341 (343)
T ss_dssp S-HHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHH
Confidence 355666666654
No 262
>PLN02591 tryptophan synthase
Probab=50.58 E-value=1.8e+02 Score=31.56 Aligned_cols=90 Identities=16% Similarity=0.206 Sum_probs=59.8
Q ss_pred EEEeCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCC----------------CCHHHHHHHHHHHHhcCCCCEE--E
Q psy11975 517 LLKPQKHTTTRATIDLTQKAAKAGANAALILCPYYFQKK----------------MTEDLIYEHFISVADNSPIPVI--I 578 (786)
Q Consensus 517 VIaGVGa~ST~EAIELAr~Ae~aGADAVmViPPyY~kps----------------~S~eeLv~YFraIAeAtdLPIi--L 578 (786)
..+-.|..+.+.++++++...+.|||.+=+--||-...- ++-+.+++..+++.+..++|++ .
T Consensus 6 ~yi~aG~P~~e~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~rAL~~G~~~~~~~~~~~~~r~~~~~p~ilm~ 85 (250)
T PLN02591 6 PYITAGDPDLDTTAEALRLLDACGADVIELGVPYSDPLADGPVIQAAATRALEKGTTLDSVISMLKEVAPQLSCPIVLFT 85 (250)
T ss_pred EEEeCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCcccCHHHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCEEEEe
Confidence 345678899999999999999999999999999854311 2344566666666655677844 4
Q ss_pred EeCCCCcCCccCHHHHHHHHhCCCEEEEEeC
Q psy11975 579 YNNTFVTNIDISVDTLVKLAHHENIRGVKDT 609 (786)
Q Consensus 579 YNiP~~TGv~LSpelL~rLAeiPNVVGIKDS 609 (786)
|-+|-. .+..+.+.+.++--.+-|+-.-
T Consensus 86 Y~N~i~---~~G~~~F~~~~~~aGv~Gviip 113 (250)
T PLN02591 86 YYNPIL---KRGIDKFMATIKEAGVHGLVVP 113 (250)
T ss_pred cccHHH---HhHHHHHHHHHHHcCCCEEEeC
Confidence 555542 2345555555544456666666
No 263
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=50.49 E-value=3.7e+02 Score=29.33 Aligned_cols=63 Identities=11% Similarity=-0.086 Sum_probs=45.4
Q ss_pred CCCeEEEeCC-CCCHHHHHHHHHHHHHcCCCEEEE------cCCCCCC-CCCCHHHHHHHHHHHHhcCCCCEEE
Q psy11975 513 WQADLLKPQK-HTTTRATIDLTQKAAKAGANAALI------LCPYYFQ-KKMTEDLIYEHFISVADNSPIPVII 578 (786)
Q Consensus 513 GRVPVIaGVG-a~ST~EAIELAr~Ae~aGADAVmV------iPPyY~k-ps~S~eeLv~YFraIAeAtdLPIiL 578 (786)
|.--+|+|=. -.+-+.+.+.|+.++++|+..+-- +.||.|. ++ .+ -++.+.++++..++|++-
T Consensus 14 ~~~~~iaGPC~vEs~e~~~~~a~~~~~~g~~~~r~g~~kpRts~~sf~G~G--~~-gl~~L~~~~~~~Gl~~~T 84 (250)
T PRK13397 14 SKNNFIVGPCSIESYDHIRLAASSAKKLGYNYFRGGAYKPRTSAASFQGLG--LQ-GIRYLHEVCQEFGLLSVS 84 (250)
T ss_pred CCCcEEeccCccCCHHHHHHHHHHHHHcCCCEEEecccCCCCCCcccCCCC--HH-HHHHHHHHHHHcCCCEEE
Confidence 3346777644 467788899999999999976653 3355554 34 54 577888889999999985
No 264
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=50.48 E-value=78 Score=33.26 Aligned_cols=81 Identities=17% Similarity=0.217 Sum_probs=50.5
Q ss_pred HHHHHHHHHHcCCCEEEEcCCCCCCCC--CCHHHHHHHHHHHHhc-CCCCEEEEeCCCCcC-CccCHHHHHHHHh-C---
Q psy11975 529 TIDLTQKAAKAGANAALILCPYYFQKK--MTEDLIYEHFISVADN-SPIPVIIYNNTFVTN-IDISVDTLVKLAH-H--- 600 (786)
Q Consensus 529 AIELAr~Ae~aGADAVmViPPyY~kps--~S~eeLv~YFraIAeA-tdLPIiLYNiP~~TG-v~LSpelL~rLAe-i--- 600 (786)
..+.++.|+++||+.|.+.+.++.... ..-+.+++.++++++. .++.+.+=|.|.... ..-+++.+.++.+ +
T Consensus 86 l~~~i~~A~~lGa~~vv~h~g~~~~~~~e~~~~~~~~~l~~l~~~~~gv~l~lEn~~~~~~~~~~~~~~~~~ll~~v~~~ 165 (273)
T smart00518 86 LIDEIKRCEELGIKALVFHPGSYLKQSKEEALNRIIESLNEVIDETKGVVILLETTAGKGSQIGSTFEDLKEIIDLIKEL 165 (273)
T ss_pred HHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHHHHHhccCCcEEEEeccCCCCCccCCCHHHHHHHHHhcCCC
Confidence 344567788899999888777653322 0123455677777764 368888888875322 2236777777763 3
Q ss_pred CCEEEEEeC
Q psy11975 601 ENIRGVKDT 609 (786)
Q Consensus 601 PNVVGIKDS 609 (786)
|+|--+=|.
T Consensus 166 ~~~g~~lD~ 174 (273)
T smart00518 166 DRIGVCIDT 174 (273)
T ss_pred CCeEEEEEc
Confidence 565555555
No 265
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=50.46 E-value=59 Score=34.55 Aligned_cols=87 Identities=13% Similarity=0.064 Sum_probs=59.5
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEEEcC--CCCCCCCCCHHHHHHHHHHHHhcCCCCEEEEeCCCCcCCccCHHHHHHHHhC
Q psy11975 523 HTTTRATIDLTQKAAKAGANAALILC--PYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHH 600 (786)
Q Consensus 523 a~ST~EAIELAr~Ae~aGADAVmViP--PyY~kps~S~eeLv~YFraIAeAtdLPIiLYNiP~~TGv~LSpelL~rLAei 600 (786)
..+-.+.+++++.++++|+|.+++.. .--...+ --+++++++++.+++||+.- |---+++.+.++.+.
T Consensus 151 ~~~~~~~~~~~~~l~~~G~~~iivt~i~~~g~~~g----~~~~~~~~i~~~~~ipvia~------GGi~s~~di~~~~~~ 220 (254)
T TIGR00735 151 ESTGLDAVEWAKEVEKLGAGEILLTSMDKDGTKSG----YDLELTKAVSEAVKIPVIAS------GGAGKPEHFYEAFTK 220 (254)
T ss_pred ccCCCCHHHHHHHHHHcCCCEEEEeCcCcccCCCC----CCHHHHHHHHHhCCCCEEEe------CCCCCHHHHHHHHHc
Confidence 33456788999999999999999943 2111111 12578888999899998864 334578999999877
Q ss_pred CCEEEEEeC--------CHHHHHHHHh
Q psy11975 601 ENIRGVKDT--------DNIKLANMAN 619 (786)
Q Consensus 601 PNVVGIKDS--------Dl~ri~~ll~ 619 (786)
.++-|+=-. ++..+.+++.
T Consensus 221 g~~dgv~~g~a~~~~~~~~~~~~~~~~ 247 (254)
T TIGR00735 221 GKADAALAASVFHYREITIGEVKEYLA 247 (254)
T ss_pred CCcceeeEhHHHhCCCCCHHHHHHHHH
Confidence 667775332 5555555544
No 266
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=50.44 E-value=41 Score=37.12 Aligned_cols=72 Identities=19% Similarity=0.119 Sum_probs=44.9
Q ss_pred CCeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHhcCCCCEEEEeCCCCcCCccCHHH
Q psy11975 514 QADLLKPQKHTTTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDT 593 (786)
Q Consensus 514 RVPVIaGVGa~ST~EAIELAr~Ae~aGADAVmViPPyY~kps~S~eeLv~YFraIAeAtdLPIiLYNiP~~TGv~LSpel 593 (786)
.++|++-|+. ++.++.|+++|||+|.+...--.... ........+.+|.+++++||+.= -|+ -+.+.
T Consensus 109 g~~v~~~v~s------~~~a~~a~~~GaD~Ivv~g~eagGh~-g~~~~~~ll~~v~~~~~iPviaa-----GGI-~~~~~ 175 (307)
T TIGR03151 109 GVKVIPVVAS------VALAKRMEKAGADAVIAEGMESGGHI-GELTTMALVPQVVDAVSIPVIAA-----GGI-ADGRG 175 (307)
T ss_pred CCEEEEEcCC------HHHHHHHHHcCCCEEEEECcccCCCC-CCCcHHHHHHHHHHHhCCCEEEE-----CCC-CCHHH
Confidence 4678876654 46788999999999999764111100 01124677888888888998753 233 34555
Q ss_pred HHHHH
Q psy11975 594 LVKLA 598 (786)
Q Consensus 594 L~rLA 598 (786)
+.+..
T Consensus 176 ~~~al 180 (307)
T TIGR03151 176 MAAAF 180 (307)
T ss_pred HHHHH
Confidence 54443
No 267
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=50.27 E-value=77 Score=35.51 Aligned_cols=71 Identities=6% Similarity=-0.006 Sum_probs=47.4
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCC--CHHHHHHHHHHHHhcCCCCEEEEeCCCCcCCccCHHHHHHHHh
Q psy11975 523 HTTTRATIDLTQKAAKAGANAALILCPYYFQKKM--TEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAH 599 (786)
Q Consensus 523 a~ST~EAIELAr~Ae~aGADAVmViPPyY~kps~--S~eeLv~YFraIAeAtdLPIiLYNiP~~TGv~LSpelL~rLAe 599 (786)
+.+.+|++++++..++.|+|.+-+....|..+.. ...-...+-+.|-+++++||+. .|.-.+++...++.+
T Consensus 223 G~~~~e~~~i~~~l~~~gvD~i~vs~g~~~~~~~~~~~~~~~~~~~~ik~~~~ipVi~------~G~i~~~~~a~~~l~ 295 (337)
T PRK13523 223 GLTVQDYVQYAKWMKEQGVDLIDVSSGAVVPARIDVYPGYQVPFAEHIREHANIATGA------VGLITSGAQAEEILQ 295 (337)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCccccHHHHHHHHhhcCCcEEE------eCCCCCHHHHHHHHH
Confidence 4679999999999999999999987754432110 0111234556666677888765 344456787777764
No 268
>PRK11197 lldD L-lactate dehydrogenase; Provisional
Probab=50.22 E-value=3.8e+02 Score=30.91 Aligned_cols=23 Identities=13% Similarity=0.154 Sum_probs=20.1
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEc
Q psy11975 525 TTRATIDLTQKAAKAGANAALIL 547 (786)
Q Consensus 525 ST~EAIELAr~Ae~aGADAVmVi 547 (786)
+-+-+.++.++|+++|+.+++++
T Consensus 133 Dr~~~~~li~RA~~aG~~alvlT 155 (381)
T PRK11197 133 DRGFMRNALERAKAAGCSTLVFT 155 (381)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEe
Confidence 55778899999999999999984
No 269
>PRK07392 threonine-phosphate decarboxylase; Validated
Probab=50.16 E-value=1.6e+02 Score=32.30 Aligned_cols=121 Identities=16% Similarity=0.179 Sum_probs=69.5
Q ss_pred EEEeCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCC--------------CCHHHHH----HHHHHHHhcC-CCCEE
Q psy11975 517 LLKPQKHTTTRATIDLTQKAAKAGANAALILCPYYFQKK--------------MTEDLIY----EHFISVADNS-PIPVI 577 (786)
Q Consensus 517 VIaGVGa~ST~EAIELAr~Ae~aGADAVmViPPyY~kps--------------~S~eeLv----~YFraIAeAt-dLPIi 577 (786)
|+++.|+ .+++.++-.+..-| |.|++..|.|.... +++++.. .-++++.+.. ..-++
T Consensus 77 I~it~G~---~~~i~~~~~~l~~g-~~vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (360)
T PRK07392 77 ILPGNGA---AELLTWAGRELAQL-RAVYLITPAFGDYRRALRAFGATVKELPLPLDQPSPGLTLRLQTLPPQLTPNDGL 152 (360)
T ss_pred EEECCCH---HHHHHHHHHHhCCC-CeEEEECCCcHHHHHHHHHcCCeEEEEecccccCCcccccCHHHHHHhccCCCEE
Confidence 7777666 67888777665445 78999999873210 1111110 1133333322 34567
Q ss_pred EEeCCCC-cCCccCHHHHHHHHhCCCEEEEEeC---CHHH------HHHHHhhcCCCCEEEEeCCcchh-hhhhccCC
Q psy11975 578 IYNNTFV-TNIDISVDTLVKLAHHENIRGVKDT---DNIK------LANMANQTKDLNFSVFAGSAGYL-LSGLLVGC 644 (786)
Q Consensus 578 LYNiP~~-TGv~LSpelL~rLAeiPNVVGIKDS---Dl~r------i~~ll~~~~~~df~Vf~G~DelL-L~aL~~GA 644 (786)
+-++|.. ||..++.+.|.+|++.-+++=+ |+ ++.. +...+. ..+++-++.+..-.+ +++++.|.
T Consensus 153 ~l~nP~NPTG~~~~~~~l~~l~~~~~~~Ii-DE~y~~~~~~~~~~s~~~~~~--~~~~vi~i~S~SK~~~l~GlRiG~ 227 (360)
T PRK07392 153 LLNNPHNPTGKLWSREAILPLLEQFALVVV-DEAFMDFLPPDAEQSLIPCLA--EYPNLIILRSLTKFYSLPGLRLGY 227 (360)
T ss_pred EEeCCCCCCCCCcCHHHHHHHHHHCCEEEE-ECchhhhccCccccchHHHhh--cCCCEEEEEechhhhcCCchheee
Confidence 7777765 8999999999999953356555 77 4321 111222 224455555554443 47777654
No 270
>TIGR00034 aroFGH phospho-2-dehydro-3-deoxyheptonate aldolase.
Probab=49.93 E-value=4.5e+02 Score=30.11 Aligned_cols=105 Identities=10% Similarity=0.004 Sum_probs=67.6
Q ss_pred CCCCeEEEeC-CCCCHHHHHHHHHHHHHcCCC----EEEEcCCCCCCCCCC-----------------HHHHHHHHHHHH
Q psy11975 512 EWQADLLKPQ-KHTTTRATIDLTQKAAKAGAN----AALILCPYYFQKKMT-----------------EDLIYEHFISVA 569 (786)
Q Consensus 512 aGRVPVIaGV-Ga~ST~EAIELAr~Ae~aGAD----AVmViPPyY~kps~S-----------------~eeLv~YFraIA 569 (786)
+.|+-||+|= +-.+.+.+++.|+..+++|+. -++++==|++||..+ -++=+.+.+++.
T Consensus 46 d~rllvIvGPCSIhd~~~a~eyA~rLk~l~~~~~d~l~ivmR~y~eKPRTt~GWKGli~DP~ld~sf~i~~GL~~~R~ll 125 (344)
T TIGR00034 46 DDRLLVVIGPCSIHDPEAAIEYATRLKALREELKDDLEIVMRVYFEKPRTTVGWKGLINDPDLNGSFRINHGLRIARKLL 125 (344)
T ss_pred CCCeEEEecCCCCCCHHHHHHHHHHHHHHHHhhhcceEEEEEeccccCCCccccccccCCCCcCCCCCHHHHHHHHHHHH
Confidence 4678888874 457889999999999998874 444555677787322 134466667765
Q ss_pred ---hcCCCCEEEEeC----CC----------CcCCccCHHHHHHHH-hCCCEEEEEeC---CHHHHHH
Q psy11975 570 ---DNSPIPVIIYNN----TF----------VTNIDISVDTLVKLA-HHENIRGVKDT---DNIKLAN 616 (786)
Q Consensus 570 ---eAtdLPIiLYNi----P~----------~TGv~LSpelL~rLA-eiPNVVGIKDS---Dl~ri~~ 616 (786)
...++|+.-==. |. -.-......+..+|+ .+.-=||+|.. ++.....
T Consensus 126 ~~i~~~GlPvatE~ld~~~~~y~~Dlisw~aIGARt~esq~hRelaSgl~~PVgfKngt~g~i~~al~ 193 (344)
T TIGR00034 126 LDLVNLGLPIAGEFLDMISPQYLADLFSWGAIGARTTESQVHRELASGLSCPVGFKNGTDGNLQVAID 193 (344)
T ss_pred HHHHHhCCCeEEEecCcCcHHHHHHHHhhccccCccccCHHHHHHHhCCCCceEecCCCCCCHHHHHH
Confidence 667888863111 10 011122234667887 58899999999 6655443
No 271
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=49.74 E-value=96 Score=33.19 Aligned_cols=128 Identities=13% Similarity=0.007 Sum_probs=69.9
Q ss_pred CCeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHhcCC--CCEEEEeCC---------
Q psy11975 514 QADLLKPQKHTTTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSP--IPVIIYNNT--------- 582 (786)
Q Consensus 514 RVPVIaGVGa~ST~EAIELAr~Ae~aGADAVmViPPyY~kps~S~eeLv~YFraIAeAtd--LPIiLYNiP--------- 582 (786)
.+||++|-|-.+.+++.++. ++|++++.+-.-.|-. . ..+++++++.+ .-++--++.
T Consensus 74 ~~pv~~gGGi~s~~d~~~l~----~~G~~~vvigs~~~~~----~----~~~~~~~~~~~~~~i~vsiD~k~g~~~~~~v 141 (258)
T PRK01033 74 FMPLCYGGGIKTLEQAKKIF----SLGVEKVSINTAALED----P----DLITEAAERFGSQSVVVSIDVKKNLGGKFDV 141 (258)
T ss_pred CCCEEECCCCCCHHHHHHHH----HCCCCEEEEChHHhcC----H----HHHHHHHHHhCCCcEEEEEEEecCCCCcEEE
Confidence 47899988888887755543 6799999876433322 2 23344443321 111111211
Q ss_pred ----CCcCCccCHHHHHHHH-h--CCCEEEE------EeC--CHHHHHHHHhhcCCCCEEEEeCCc----chhhhhh-cc
Q psy11975 583 ----FVTNIDISVDTLVKLA-H--HENIRGV------KDT--DNIKLANMANQTKDLNFSVFAGSA----GYLLSGL-LV 642 (786)
Q Consensus 583 ----~~TGv~LSpelL~rLA-e--iPNVVGI------KDS--Dl~ri~~ll~~~~~~df~Vf~G~D----elLL~aL-~~ 642 (786)
......+.+..+.+.+ + ...|+.. ... |++.+.++.+. .++.|+.+.+ +-+...+ ..
T Consensus 142 ~~~gw~~~~~~~~~e~~~~~~~~g~~~ii~~~i~~~G~~~G~d~~~i~~~~~~---~~ipvIasGGv~s~eD~~~l~~~~ 218 (258)
T PRK01033 142 YTHNGTKKLKKDPLELAKEYEALGAGEILLNSIDRDGTMKGYDLELLKSFRNA---LKIPLIALGGAGSLDDIVEAILNL 218 (258)
T ss_pred EEcCCeecCCCCHHHHHHHHHHcCCCEEEEEccCCCCCcCCCCHHHHHHHHhh---CCCCEEEeCCCCCHHHHHHHHHHC
Confidence 1112345565554444 3 3455533 111 77888877662 2344443333 2355666 68
Q ss_pred CCcccccccccccc
Q psy11975 643 GCAGGINALSAVLG 656 (786)
Q Consensus 643 GAdG~Isg~aN~~P 656 (786)
|++|++.|.+-.|-
T Consensus 219 GvdgVivg~a~~~~ 232 (258)
T PRK01033 219 GADAAAAGSLFVFK 232 (258)
T ss_pred CCCEEEEcceeeeC
Confidence 99999999876553
No 272
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=49.65 E-value=40 Score=35.03 Aligned_cols=65 Identities=26% Similarity=0.313 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHhcCCCCEEEEeCCCCcCCccCHHHHHHHH
Q psy11975 526 TRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLA 598 (786)
Q Consensus 526 T~EAIELAr~Ae~aGADAVmViPPyY~kps~S~eeLv~YFraIAeAtdLPIiLYNiP~~TGv~LSpelL~rLA 598 (786)
..+.+++++.++++|+|++.+..-. -... ...--+++++++++.+++||++-- |+ -+++.+.+++
T Consensus 152 ~~~~~~~~~~~~~~G~d~i~i~~i~-~~g~-~~g~~~~~~~~i~~~~~ipvia~G-----Gi-~s~~di~~~l 216 (232)
T TIGR03572 152 GRDPVEWAREAEQLGAGEILLNSID-RDGT-MKGYDLELIKTVSDAVSIPVIALG-----GA-GSLDDLVEVA 216 (232)
T ss_pred CCCHHHHHHHHHHcCCCEEEEeCCC-ccCC-cCCCCHHHHHHHHhhCCCCEEEEC-----CC-CCHHHHHHHH
Confidence 3457899999999999999998721 1110 011127888999988899977642 33 3788888833
No 273
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=49.41 E-value=1.1e+02 Score=32.08 Aligned_cols=132 Identities=14% Similarity=0.058 Sum_probs=66.1
Q ss_pred CCeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHh-cCCCCEEEEeCC----------
Q psy11975 514 QADLLKPQKHTTTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVAD-NSPIPVIIYNNT---------- 582 (786)
Q Consensus 514 RVPVIaGVGa~ST~EAIELAr~Ae~aGADAVmViPPyY~kps~S~eeLv~YFraIAe-AtdLPIiLYNiP---------- 582 (786)
++||+++=|-.+.+++.++.. .|||+|++-...+..| +-+.+..+.+.. ++-++|=++.-+
T Consensus 71 ~~pv~~~GGI~s~~d~~~~l~----~G~~~v~ig~~~~~~p----~~~~~i~~~~~~~~i~~~ld~k~~~~~~~~v~~~~ 142 (243)
T cd04731 71 FIPLTVGGGIRSLEDARRLLR----AGADKVSINSAAVENP----ELIREIAKRFGSQCVVVSIDAKRRGDGGYEVYTHG 142 (243)
T ss_pred CCCEEEeCCCCCHHHHHHHHH----cCCceEEECchhhhCh----HHHHHHHHHcCCCCEEEEEEeeecCCCceEEEEcC
Confidence 478998777777777766544 6999999987665433 233332232211 111222222111
Q ss_pred CCcCCccCHHHH-HHHHh--CCCEEE--E-----EeC-CHHHHHHHHhhcCCCCEEE-EeC-Cc--chhhhhhcc-CCcc
Q psy11975 583 FVTNIDISVDTL-VKLAH--HENIRG--V-----KDT-DNIKLANMANQTKDLNFSV-FAG-SA--GYLLSGLLV-GCAG 646 (786)
Q Consensus 583 ~~TGv~LSpelL-~rLAe--iPNVVG--I-----KDS-Dl~ri~~ll~~~~~~df~V-f~G-~D--elLL~aL~~-GAdG 646 (786)
...-.......+ .++.+ +..|+- + +.. +++.+.++.+. . ++.| ..| .- +.+...+.. |++|
T Consensus 143 ~~~~~~~~~~~~~~~l~~~G~d~i~v~~i~~~g~~~g~~~~~i~~i~~~-~--~~pvia~GGi~~~~di~~~l~~~g~dg 219 (243)
T cd04731 143 GRKPTGLDAVEWAKEVEELGAGEILLTSMDRDGTKKGYDLELIRAVSSA-V--NIPVIASGGAGKPEHFVEAFEEGGADA 219 (243)
T ss_pred CceecCCCHHHHHHHHHHCCCCEEEEeccCCCCCCCCCCHHHHHHHHhh-C--CCCEEEeCCCCCHHHHHHHHHhCCCCE
Confidence 001113344333 33432 333333 2 122 56767777652 2 3333 333 22 234555665 8999
Q ss_pred cccccccccc
Q psy11975 647 GINALSAVLG 656 (786)
Q Consensus 647 ~Isg~aN~~P 656 (786)
++.+.+-+..
T Consensus 220 v~vg~al~~~ 229 (243)
T cd04731 220 ALAASIFHFG 229 (243)
T ss_pred EEEeHHHHcC
Confidence 9998764443
No 274
>PRK08005 epimerase; Validated
Probab=49.09 E-value=2e+02 Score=30.44 Aligned_cols=110 Identities=11% Similarity=-0.033 Sum_probs=71.7
Q ss_pred eEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHhcCCCCEEEEeCCCCcCCccCHHHHH
Q psy11975 516 DLLKPQKHTTTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLV 595 (786)
Q Consensus 516 PVIaGVGa~ST~EAIELAr~Ae~aGADAVmViPPyY~kps~S~eeLv~YFraIAeAtdLPIiLYNiP~~TGv~LSpelL~ 595 (786)
-|.+++-+. ....+..+..+++|+.+-+++.|.- + .+. +++ +.+.++.=+++=-.|+..|..+-++.+.
T Consensus 84 ~It~H~Ea~--~~~~~~l~~Ik~~G~k~GlAlnP~T--p---~~~-i~~---~l~~vD~VlvMsV~PGf~GQ~f~~~~~~ 152 (210)
T PRK08005 84 WIFIHAESV--QNPSEILADIRAIGAKAGLALNPAT--P---LLP-YRY---LALQLDALMIMTSEPDGRGQQFIAAMCE 152 (210)
T ss_pred EEEEcccCc--cCHHHHHHHHHHcCCcEEEEECCCC--C---HHH-HHH---HHHhcCEEEEEEecCCCccceecHHHHH
Confidence 356666643 4556677778888999999998861 1 233 333 3445666666677899999999999888
Q ss_pred HHHhCCCEEEEEeCCHHHHHHHHhhcCCCCEEEEeCCc-chhhhhhccCCccccccccc
Q psy11975 596 KLAHHENIRGVKDTDNIKLANMANQTKDLNFSVFAGSA-GYLLSGLLVGCAGGINALSA 653 (786)
Q Consensus 596 rLAeiPNVVGIKDSDl~ri~~ll~~~~~~df~Vf~G~D-elLL~aL~~GAdG~Isg~aN 653 (786)
++. ++++++. .-.+.|=.|-. +.+.....+|++.++.|.+-
T Consensus 153 KI~--------------~l~~~~~---~~~I~VDGGI~~~~i~~l~~aGad~~V~Gsai 194 (210)
T PRK08005 153 KVS--------------QSREHFP---AAECWADGGITLRAARLLAAAGAQHLVIGRAL 194 (210)
T ss_pred HHH--------------HHHHhcc---cCCEEEECCCCHHHHHHHHHCCCCEEEEChHh
Confidence 884 2233332 11355545554 34556778999999988653
No 275
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=49.02 E-value=58 Score=35.49 Aligned_cols=38 Identities=8% Similarity=0.116 Sum_probs=30.6
Q ss_pred CCeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCC
Q psy11975 514 QADLLKPQKHTTTRATIDLTQKAAKAGANAALILCPYYF 552 (786)
Q Consensus 514 RVPVIaGVGa~ST~EAIELAr~Ae~aGADAVmViPPyY~ 552 (786)
++||++=+.. ...+..++++.++++|||+|.++.-.+.
T Consensus 168 ~~Pv~vKl~~-~~~~~~~~a~~~~~~Gadgi~~~Nt~~~ 205 (299)
T cd02940 168 KIPVIAKLTP-NITDIREIARAAKEGGADGVSAINTVNS 205 (299)
T ss_pred CCCeEEECCC-CchhHHHHHHHHHHcCCCEEEEeccccc
Confidence 4788887664 4568899999999999999998875543
No 276
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=48.52 E-value=72 Score=39.45 Aligned_cols=71 Identities=10% Similarity=0.055 Sum_probs=42.8
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCC---CCHHHHHHHHHHHHhcCCCCEEEEeCCCCcCCccCHHHHHHHHh
Q psy11975 523 HTTTRATIDLTQKAAKAGANAALILCPYYFQKK---MTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAH 599 (786)
Q Consensus 523 a~ST~EAIELAr~Ae~aGADAVmViPPyY~kps---~S~eeLv~YFraIAeAtdLPIiLYNiP~~TGv~LSpelL~rLAe 599 (786)
+.+.+|++++++.++++|+|.|-|....+.... ....-...+-+.|-+++++||+. .|.-.+++...++.+
T Consensus 634 g~~~~~~~~~~~~l~~~g~d~i~vs~g~~~~~~~~~~~~~~~~~~~~~ik~~~~~pv~~------~G~i~~~~~a~~~l~ 707 (765)
T PRK08255 634 GNTPDDAVEIARAFKAAGADLIDVSSGQVSKDEKPVYGRMYQTPFADRIRNEAGIATIA------VGAISEADHVNSIIA 707 (765)
T ss_pred CCCHHHHHHHHHHHHhcCCcEEEeCCCCCCcCCCCCcCccccHHHHHHHHHHcCCEEEE------eCCCCCHHHHHHHHH
Confidence 457899999999999999999999755432210 00000123334555556677654 233345666666654
No 277
>PRK10528 multifunctional acyl-CoA thioesterase I and protease I and lysophospholipase L1; Provisional
Probab=48.41 E-value=44 Score=33.60 Aligned_cols=49 Identities=16% Similarity=0.237 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHcCCCEEEEc---CCCCCCCCCCHHHHHHHHHHHHhcCCCCEE
Q psy11975 527 RATIDLTQKAAKAGANAALIL---CPYYFQKKMTEDLIYEHFISVADNSPIPVI 577 (786)
Q Consensus 527 ~EAIELAr~Ae~aGADAVmVi---PPyY~kps~S~eeLv~YFraIAeAtdLPIi 577 (786)
++..++.+.+.+.|++-+++. ||.|.... .+.+.+.++++|++.+++++
T Consensus 95 ~~l~~li~~~~~~~~~~ill~~~~P~~~~~~~--~~~~~~~~~~~a~~~~v~~i 146 (191)
T PRK10528 95 QTLRQIIQDVKAANAQPLLMQIRLPANYGRRY--NEAFSAIYPKLAKEFDIPLL 146 (191)
T ss_pred HHHHHHHHHHHHcCCCEEEEEeecCCcccHHH--HHHHHHHHHHHHHHhCCCcc
Confidence 334456666777788888763 33332222 45567778888888777665
No 278
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=48.28 E-value=4.1e+02 Score=29.16 Aligned_cols=141 Identities=11% Similarity=-0.004 Sum_probs=86.5
Q ss_pred CCeEEE-eCCCCCHHHHHHHHHHHHHcC-CCEE---EEcCCCCCCCCCCHHHHHHHHHHHHhcCCCCEEEEeCCCCcCCc
Q psy11975 514 QADLLK-PQKHTTTRATIDLTQKAAKAG-ANAA---LILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNID 588 (786)
Q Consensus 514 RVPVIa-GVGa~ST~EAIELAr~Ae~aG-ADAV---mViPPyY~kps~S~eeLv~YFraIAeAtdLPIiLYNiP~~TGv~ 588 (786)
++.++- -.|+.+.+||+..||.|.+++ -|.| ++..+.|..|+ .-++++--+.+++. +.-|+-|-.+.
T Consensus 69 ~~~~LPNTaGc~taeEAv~tArlARE~~~t~wiKlEVi~d~~tLlPD--~~etl~Aae~Lv~e-GF~VlPY~~dD----- 140 (262)
T COG2022 69 GVTLLPNTAGCRTAEEAVRTARLAREALGTNWIKLEVIGDEKTLLPD--PIETLKAAEQLVKE-GFVVLPYTTDD----- 140 (262)
T ss_pred CcEeCCCccccCCHHHHHHHHHHHHHHccCCeEEEEEecCCcccCCC--hHHHHHHHHHHHhC-CCEEeeccCCC-----
Confidence 344554 456788999999999998874 4544 45667787776 88888888887754 55566665432
Q ss_pred cCHHHHHHHHhCCCEEEEEeC----------CHHHHHHHHhhcCCCCEEEEeCCc--chhhhhhccCCcccccccccccc
Q psy11975 589 ISVDTLVKLAHHENIRGVKDT----------DNIKLANMANQTKDLNFSVFAGSA--GYLLSGLLVGCAGGINALSAVLG 656 (786)
Q Consensus 589 LSpelL~rLAeiPNVVGIKDS----------Dl~ri~~ll~~~~~~df~Vf~G~D--elLL~aL~~GAdG~Isg~aN~~P 656 (786)
+-+-++|.+..-.+=+--. +...++-++++ ..-.+-|=.|-. .....++.+|+||++.-++-.-.
T Consensus 141 --~v~arrLee~GcaavMPl~aPIGSg~G~~n~~~l~iiie~-a~VPviVDAGiG~pSdAa~aMElG~DaVL~NTAiA~A 217 (262)
T COG2022 141 --PVLARRLEEAGCAAVMPLGAPIGSGLGLQNPYNLEIIIEE-ADVPVIVDAGIGTPSDAAQAMELGADAVLLNTAIARA 217 (262)
T ss_pred --HHHHHHHHhcCceEeccccccccCCcCcCCHHHHHHHHHh-CCCCEEEeCCCCChhHHHHHHhcccceeehhhHhhcc
Confidence 4455666554333222222 55666666653 222333433433 45778899999999877764433
Q ss_pred HHHHHHHHH
Q psy11975 657 GPICELYDL 665 (786)
Q Consensus 657 el~vaL~eA 665 (786)
.--+.|-+|
T Consensus 218 ~DPv~MA~A 226 (262)
T COG2022 218 KDPVAMARA 226 (262)
T ss_pred CChHHHHHH
Confidence 333333333
No 279
>PRK01060 endonuclease IV; Provisional
Probab=48.25 E-value=1.2e+02 Score=31.97 Aligned_cols=72 Identities=14% Similarity=0.150 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCH----HHHHHHHHHHHhcC-CCCEEEEeCCCCcC-CccCHHHHHHHHh
Q psy11975 527 RATIDLTQKAAKAGANAALILCPYYFQKKMTE----DLIYEHFISVADNS-PIPVIIYNNTFVTN-IDISVDTLVKLAH 599 (786)
Q Consensus 527 ~EAIELAr~Ae~aGADAVmViPPyY~kps~S~----eeLv~YFraIAeAt-dLPIiLYNiP~~TG-v~LSpelL~rLAe 599 (786)
+...+.++.|.++||..|.+.+..+.... .. +.+.+.++++++.. ++.|.+=|.|.... ..-+++.+.+|.+
T Consensus 89 ~~~~~~i~~A~~lga~~vv~h~G~~~~~~-~~~~~~~~~~e~l~~l~~~~~gv~l~iEn~~~~~~~~~~~~~~~~~l~~ 166 (281)
T PRK01060 89 DFLIQEIERCAALGAKLLVFHPGSHLGDI-DEEDCLARIAESLNEALDKTQGVTIVLENTAGQGSELGRRFEELARIID 166 (281)
T ss_pred HHHHHHHHHHHHcCCCEEEEcCCcCCCCC-cHHHHHHHHHHHHHHHHhcCCCCEEEEecCCCCCCcccCCHHHHHHHHH
Confidence 34566677788999999999877543221 12 23444555554333 68899999875321 2236777777773
No 280
>cd01967 Nitrogenase_MoFe_alpha_like Nitrogenase_MoFe_alpha_like: Nitrogenase MoFe protein, alpha subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. Three genetically distinct types of nitrogenase systems are known to exist: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). This group contains the alpha subunit of component 1 of all three different forms. The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. The role of the delta subunit is unknown. For MoFe, each alphabeta pair of subunits contains one
Probab=47.87 E-value=41 Score=37.84 Aligned_cols=109 Identities=16% Similarity=0.142 Sum_probs=63.4
Q ss_pred EEEeCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHhcCCCCEEEEeCCCCcCCccC------
Q psy11975 517 LLKPQKHTTTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDIS------ 590 (786)
Q Consensus 517 VIaGVGa~ST~EAIELAr~Ae~aGADAVmViPPyY~kps~S~eeLv~YFraIAeAtdLPIiLYNiP~~TGv~LS------ 590 (786)
+|.|- ...+.++|+.+..-. -.++|+|++-.--. +--|++..-.+++.+..++||+..+.|+..|....
T Consensus 67 ~V~Gg-~~~L~~~i~~~~~~~--~P~~i~v~~tC~~~--~iGdDi~~v~~~~~~~~~~~vi~v~t~gf~g~~~~~G~~~a 141 (406)
T cd01967 67 IVFGG-EKKLKKAIKEAYERF--PPKAIFVYSTCPTG--LIGDDIEAVAKEASKELGIPVIPVNCEGFRGVSQSLGHHIA 141 (406)
T ss_pred eeeCc-HHHHHHHHHHHHHhC--CCCEEEEECCCchh--hhccCHHHHHHHHHHhhCCCEEEEeCCCeeCCcccHHHHHH
Confidence 55563 556666666654433 46777777643221 12345666666666567899999999988773332
Q ss_pred HHHHHHHH-h-------C---CCEEEEEeC--CHHHHHHHHhhcCCCCEE-EEeC
Q psy11975 591 VDTLVKLA-H-------H---ENIRGVKDT--DNIKLANMANQTKDLNFS-VFAG 631 (786)
Q Consensus 591 pelL~rLA-e-------i---PNVVGIKDS--Dl~ri~~ll~~~~~~df~-Vf~G 631 (786)
.+.+.+.. . . =||+|...- |+..+.++++. .+=++. ++.|
T Consensus 142 ~~al~~~l~~~~~~~~~~~~~VNiig~~~~~~d~~el~~lL~~-~Gi~~~~~~~~ 195 (406)
T cd01967 142 NDAILDHLVGTKEPEEKTPYDVNIIGEYNIGGDAWVIKPLLEE-LGIRVNATFTG 195 (406)
T ss_pred HHHHHHHhcCCCCcCCCCCCeEEEEeccccchhHHHHHHHHHH-cCCEEEEEeCC
Confidence 22222222 1 1 367777654 88889999883 444444 3444
No 281
>PRK05198 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=47.87 E-value=3.3e+02 Score=30.08 Aligned_cols=99 Identities=10% Similarity=0.064 Sum_probs=67.9
Q ss_pred CCeEEEeCCC-CCHHHHHHHHHHHHHcCCC----EEEE--------cCCCCCCCCCCHHHHHHHHHHHHhcCCCCEE---
Q psy11975 514 QADLLKPQKH-TTTRATIDLTQKAAKAGAN----AALI--------LCPYYFQKKMTEDLIYEHFISVADNSPIPVI--- 577 (786)
Q Consensus 514 RVPVIaGVGa-~ST~EAIELAr~Ae~aGAD----AVmV--------iPPyY~kps~S~eeLv~YFraIAeAtdLPIi--- 577 (786)
.+-||+|=.. .+-+.+.+.|+..+++|+. .+.= +.||-|.-. -.++=+++++++.+.+++||+
T Consensus 10 ~~~~iAGPC~vEs~e~~~~~A~~lk~~~~~~~~~~~fK~sf~KapRTSp~sFqG~-G~eeGL~~L~~vk~~~GlpvvTeV 88 (264)
T PRK05198 10 PFFLIAGPCVIESRDLALRIAEHLKEITDKLGIPYVFKASFDKANRSSIHSFRGP-GLEEGLKILQEVKETFGVPVLTDV 88 (264)
T ss_pred ceEEEecCCcccCHHHHHHHHHHHHHHHHhcCCCeEEeccccCCCCCCCCCCCCC-ChHHHHHHHHHHHHHHCCceEEEe
Confidence 3557887554 5666778888888886543 3322 335555432 246678999999999999987
Q ss_pred --------------EEeCCCCcCCccCHHHHHHHHhCCCEEEEEeC---CHHHHH
Q psy11975 578 --------------IYNNTFVTNIDISVDTLVKLAHHENIRGVKDT---DNIKLA 615 (786)
Q Consensus 578 --------------LYNiP~~TGv~LSpelL~rLAeiPNVVGIKDS---Dl~ri~ 615 (786)
+..+|.+.-.+ .++|.++++....|-+|-. .++.+.
T Consensus 89 ~~~~~~~~v~~~~DilQIgArn~rn--~~LL~a~g~t~kpV~lKrG~~~t~~e~~ 141 (264)
T PRK05198 89 HEPEQAAPVAEVVDVLQIPAFLCRQ--TDLLVAAAKTGKVVNIKKGQFLAPWDMK 141 (264)
T ss_pred CCHHHHHHHHhhCcEEEECchhcch--HHHHHHHhccCCeEEecCCCcCCHHHHH
Confidence 34566654333 4888888889999999988 444443
No 282
>PRK07695 transcriptional regulator TenI; Provisional
Probab=47.68 E-value=54 Score=33.41 Aligned_cols=72 Identities=17% Similarity=0.093 Sum_probs=43.4
Q ss_pred EEEeCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCC--CHHHHHHHHHHHHhcCCCCEEEEeCCCCcCCccCHHHH
Q psy11975 517 LLKPQKHTTTRATIDLTQKAAKAGANAALILCPYYFQKKM--TEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTL 594 (786)
Q Consensus 517 VIaGVGa~ST~EAIELAr~Ae~aGADAVmViPPyY~kps~--S~eeLv~YFraIAeAtdLPIiLYNiP~~TGv~LSpelL 594 (786)
.++|++..+.+ .++.|.++|+|.+++- |.|...+- ....-.++++++.+.+++||+.- .| ++++.+
T Consensus 96 ~~ig~s~~s~e----~a~~a~~~Gadyi~~g-~v~~t~~k~~~~~~g~~~l~~~~~~~~ipvia~-----GG--I~~~~~ 163 (201)
T PRK07695 96 LHVGYSVHSLE----EAIQAEKNGADYVVYG-HVFPTDCKKGVPARGLEELSDIARALSIPVIAI-----GG--ITPENT 163 (201)
T ss_pred CEEEEeCCCHH----HHHHHHHcCCCEEEEC-CCCCCCCCCCCCCCCHHHHHHHHHhCCCCEEEE-----cC--CCHHHH
Confidence 45677665544 4677889999998764 33322110 00012477788887778888754 23 367777
Q ss_pred HHHHhC
Q psy11975 595 VKLAHH 600 (786)
Q Consensus 595 ~rLAei 600 (786)
.++.+.
T Consensus 164 ~~~~~~ 169 (201)
T PRK07695 164 RDVLAA 169 (201)
T ss_pred HHHHHc
Confidence 777653
No 283
>PRK09432 metF 5,10-methylenetetrahydrofolate reductase; Provisional
Probab=47.47 E-value=4.3e+02 Score=29.20 Aligned_cols=198 Identities=10% Similarity=0.017 Sum_probs=0.0
Q ss_pred CCeEEEeCCC--CCHHHHHHHHHHHHHcCCCEEEEc----CCCCCCCCCCHHHHHHHHHHHHhcC-CCCEEEEeCCCCcC
Q psy11975 514 QADLLKPQKH--TTTRATIDLTQKAAKAGANAALIL----CPYYFQKKMTEDLIYEHFISVADNS-PIPVIIYNNTFVTN 586 (786)
Q Consensus 514 RVPVIaGVGa--~ST~EAIELAr~Ae~aGADAVmVi----PPyY~kps~S~eeLv~YFraIAeAt-dLPIiLYNiP~~TG 586 (786)
.+++|.++.+ .+..+..+....+.++|++.|+++ |.-...+....-+++++.+...... ++..+---.|....
T Consensus 82 g~~~i~Hltcr~~n~~~l~~~L~~~~~~GI~niLaLrGD~p~~~~~~~~~a~dLv~li~~~~~~~i~va~yPeghp~~~~ 161 (296)
T PRK09432 82 GLEAAPHLTCIDATPDELRTIAKDYWNNGIRHIVALRGDLPPGSGKPEMYASDLVTLLKSVADFDISVAAYPEVHPEAKS 161 (296)
T ss_pred CCCeeeecccCCCCHHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCCCCcCHHHHHHHHHHhCCCccceeeCCCCCCCCCC
Q ss_pred CccCHHHHHHHHhCCCEEEEEeC--CHHHHHHHHhh--cCCCCEEEEeCCcchhhhhhccCCccccccccccccHHHHHH
Q psy11975 587 IDISVDTLVKLAHHENIRGVKDT--DNIKLANMANQ--TKDLNFSVFAGSAGYLLSGLLVGCAGGINALSAVLGGPICEL 662 (786)
Q Consensus 587 v~LSpelL~rLAeiPNVVGIKDS--Dl~ri~~ll~~--~~~~df~Vf~G~DelLL~aL~~GAdG~Isg~aN~~Pel~vaL 662 (786)
.....+.+++-.+...=.-+=.- |.+.+.+.+++ ..+-++.|+.|--...-.....-. .-++|.. +|+.+.+.
T Consensus 162 ~~~dl~~Lk~K~~aGA~~~iTQ~~Fd~~~~~~f~~~~~~~Gi~vPIi~GI~pi~s~~~~~~~-~~~~Gv~--vP~~l~~~ 238 (296)
T PRK09432 162 AQADLINLKRKVDAGANRAITQFFFDVESYLRFRDRCVSAGIDVEIVPGILPVSNFKQLKKF-ADMTNVR--IPAWMAKM 238 (296)
T ss_pred HHHHHHHHHHHHHcCCCeeecccccchHHHHHHHHHHHHcCCCCCEEeeccccCCHHHHHHH-HHccCCC--CCHHHHHH
Q ss_pred HHHHHcCCH----HHHHHHHHHhhhhHHH-HHhhhhccccCHHHHHHHHHHcCCCCC
Q psy11975 663 YDLAKAGKW----EEAMKLQHRLVKPDVT-VRNVLLMKEMGVPGVRAAMELYGYYGG 714 (786)
Q Consensus 663 ~eA~~aGD~----eeAreLQ~rL~pLi~~-l~~~~~~~~~~ia~lKaaL~lrGI~~G 714 (786)
++.+.+.+. +...-..+.+..+.+. +.+.....-.....++.+++..|+..|
T Consensus 239 l~~~~d~~~~~~~~Gi~~a~e~i~~L~~~gv~GvH~yt~n~~~~~~~il~~l~l~~~ 295 (296)
T PRK09432 239 FDGLDDDAETRKLVGASIAMDMVKILSREGVKDFHFYTLNRAELTYAICHTLGVRPG 295 (296)
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEecCCChHHHHHHHHHhCCCCC
No 284
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=47.41 E-value=4.1e+02 Score=28.95 Aligned_cols=90 Identities=14% Similarity=0.194 Sum_probs=59.7
Q ss_pred EEEeCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCC----------------CCCHHHHHHHHHHHHhcCCCCEE--E
Q psy11975 517 LLKPQKHTTTRATIDLTQKAAKAGANAALILCPYYFQK----------------KMTEDLIYEHFISVADNSPIPVI--I 578 (786)
Q Consensus 517 VIaGVGa~ST~EAIELAr~Ae~aGADAVmViPPyY~kp----------------s~S~eeLv~YFraIAeAtdLPIi--L 578 (786)
..+-+|..+.+.+++.++...+.|||.+=+--||-... +++-+.+++..+++.+..++|++ .
T Consensus 19 ~yi~aG~P~~~~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~rAL~~g~~~~~~~~~~~~~r~~~~~p~vlm~ 98 (263)
T CHL00200 19 PFITAGDPDIVITKKALKILDKKGADIIELGIPYSDPLADGPIIQEASNRALKQGINLNKILSILSEVNGEIKAPIVIFT 98 (263)
T ss_pred EEEeCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCEEEEe
Confidence 34577889999999999999999999999999985431 12344566666777655677844 4
Q ss_pred EeCCCCcCCccCHHHHHHHHhCCCEEEEEeC
Q psy11975 579 YNNTFVTNIDISVDTLVKLAHHENIRGVKDT 609 (786)
Q Consensus 579 YNiP~~TGv~LSpelL~rLAeiPNVVGIKDS 609 (786)
|-+|-. .+..+-+.+.++--++-|+-.-
T Consensus 99 Y~N~i~---~~G~e~F~~~~~~aGvdgviip 126 (263)
T CHL00200 99 YYNPVL---HYGINKFIKKISQAGVKGLIIP 126 (263)
T ss_pred cccHHH---HhCHHHHHHHHHHcCCeEEEec
Confidence 555543 2334555444443456666555
No 285
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=46.99 E-value=97 Score=33.52 Aligned_cols=72 Identities=11% Similarity=-0.019 Sum_probs=31.5
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHhcCCCCEEEEeCCCCcCCccCHHHHHHH
Q psy11975 521 QKHTTTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKL 597 (786)
Q Consensus 521 VGa~ST~EAIELAr~Ae~aGADAVmViPPyY~kps~S~eeLv~YFraIAeAtdLPIiLYNiP~~TGv~LSpelL~rL 597 (786)
+..+..+...+.++.|.+.|..-...+ -+.+....+++.+.+.++++.+. +... ..+....|. +.|+.+.+|
T Consensus 112 ~~~~~~~~~~~~i~~ak~~G~~v~~~i-~~~~~~~~~~~~~~~~~~~~~~~-Ga~~--i~l~DT~G~-~~P~~v~~l 183 (275)
T cd07937 112 DALNDVRNLEVAIKAVKKAGKHVEGAI-CYTGSPVHTLEYYVKLAKELEDM-GADS--ICIKDMAGL-LTPYAAYEL 183 (275)
T ss_pred ecCChHHHHHHHHHHHHHCCCeEEEEE-EecCCCCCCHHHHHHHHHHHHHc-CCCE--EEEcCCCCC-CCHHHHHHH
Confidence 333445666666667766664422111 00011111355566666555442 2222 233344554 344444444
No 286
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=46.63 E-value=2.7e+02 Score=30.26 Aligned_cols=216 Identities=11% Similarity=0.098 Sum_probs=0.0
Q ss_pred CCCCCCCHHHHHHHHHhCCCCCccCCCccccccCCCCCCCCCCCCCccccCCCCeEEEeCCCCCHHHHHHHHHHHHHcCC
Q psy11975 462 HSSTSMPIQKRKSLLRKFPLWPELEPSTSELKRSDRPMSVGPRSVRPSEREWQADLLKPQKHTTTRATIDLTQKAAKAGA 541 (786)
Q Consensus 462 gE~~sLT~dER~~Lle~~~~wve~~a~~~e~~~~~~~~~~~~r~v~veevaGRVPVIaGVGa~ST~EAIELAr~Ae~aGA 541 (786)
..+..++.++++++++. -.++.-.-=|..-+-++-.| |+.-.-+++--.++...++--.......+-++.|.++|+
T Consensus 12 ~~~~~~s~e~K~~i~~~---L~~~Gv~~IEvGs~~~~~~~-p~~~d~~~~~~~l~~~~~~~~~~~~~~~~dv~~A~~~g~ 87 (274)
T cd07938 12 NEKTFIPTEDKIELIDA---LSAAGLRRIEVTSFVSPKWV-PQMADAEEVLAGLPRRPGVRYSALVPNLRGAERALAAGV 87 (274)
T ss_pred CCCCCcCHHHHHHHHHH---HHHcCCCEEEeCCCCCcccc-cccCCHHHHHhhcccCCCCEEEEECCCHHHHHHHHHcCc
Q ss_pred CEEEEcCCC-----CCCCCCCHHHHHHHHHHHHhcC-CCCEEE-------EeCCCCcCCccCHHHHHHHHhC-----CCE
Q psy11975 542 NAALILCPY-----YFQKKMTEDLIYEHFISVADNS-PIPVII-------YNNTFVTNIDISVDTLVKLAHH-----ENI 603 (786)
Q Consensus 542 DAVmViPPy-----Y~kps~S~eeLv~YFraIAeAt-dLPIiL-------YNiP~~TGv~LSpelL~rLAei-----PNV 603 (786)
|.+-+.-|. ..+...+.++.++-...+.+.+ +.-+.+ +.+|..+-. +++.+.++++. ...
T Consensus 88 ~~i~i~~~~Sd~~~~~~~~~s~~~~~~~~~~~v~~ak~~G~~v~~~i~~~f~~~~~~~~--~~~~~~~~~~~~~~~Ga~~ 165 (274)
T cd07938 88 DEVAVFVSASETFSQKNINCSIAESLERFEPVAELAKAAGLRVRGYVSTAFGCPYEGEV--PPERVAEVAERLLDLGCDE 165 (274)
T ss_pred CEEEEEEecCHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeEecCCCCCCC--CHHHHHHHHHHHHHcCCCE
Q ss_pred EEEEeC-------CHHHHHHHHhhcCCCCEEEEeCCcch------hhhhhccCC---cccccccc----------ccccH
Q psy11975 604 RGVKDT-------DNIKLANMANQTKDLNFSVFAGSAGY------LLSGLLVGC---AGGINALS----------AVLGG 657 (786)
Q Consensus 604 VGIKDS-------Dl~ri~~ll~~~~~~df~Vf~G~Del------LL~aL~~GA---dG~Isg~a----------N~~Pe 657 (786)
+.++|+ ++.++-+.+++..++----+-+++.+ .+.++.+|+ ++.+.|++ |..-|
T Consensus 166 i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~i~~H~Hnd~GlA~AN~laA~~aGa~~id~t~~GlGgcpfa~eraGN~~~E 245 (274)
T cd07938 166 ISLGDTIGVATPAQVRRLLEAVLERFPDEKLALHFHDTRGQALANILAALEAGVRRFDSSVGGLGGCPFAPGATGNVATE 245 (274)
T ss_pred EEECCCCCccCHHHHHHHHHHHHHHCCCCeEEEEECCCCChHHHHHHHHHHhCCCEEEEeccccCCCCCCCCccCCcCHH
Q ss_pred HHHHHHHHHHcC---CHHHHHHHHHHhhh
Q psy11975 658 PICELYDLAKAG---KWEEAMKLQHRLVK 683 (786)
Q Consensus 658 l~vaL~eA~~aG---D~eeAreLQ~rL~p 683 (786)
.++.+++...-. |+++..++-+.+..
T Consensus 246 ~lv~~L~~~g~~t~idl~~l~~~~~~~~~ 274 (274)
T cd07938 246 DLVYMLEGMGIETGIDLDKLLAAARWISE 274 (274)
T ss_pred HHHHHHHhcCCCCCcCHHHHHHHHHHHhC
No 287
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=46.60 E-value=6.3e+02 Score=30.86 Aligned_cols=145 Identities=12% Similarity=0.118 Sum_probs=76.9
Q ss_pred HHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHhcCCCC---EEEE-eCCCCcCCccCHHHHHHHH----hC-
Q psy11975 530 IDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIP---VIIY-NNTFVTNIDISVDTLVKLA----HH- 600 (786)
Q Consensus 530 IELAr~Ae~aGADAVmViPPyY~kps~S~eeLv~YFraIAeAtdLP---IiLY-NiP~~TGv~LSpelL~rLA----ei- 600 (786)
.+..+.|.+.|+|.+-+..+. + ..+.+....+. |...++- .+-| ..|. .+.+.+.+++ +.
T Consensus 100 ~~~v~~a~~~Gid~~rifd~l----n-d~~~~~~ai~~-ak~~G~~~~~~i~yt~~p~-----~~~~~~~~~a~~l~~~G 168 (593)
T PRK14040 100 ERFVERAVKNGMDVFRVFDAM----N-DPRNLETALKA-VRKVGAHAQGTLSYTTSPV-----HTLQTWVDLAKQLEDMG 168 (593)
T ss_pred HHHHHHHHhcCCCEEEEeeeC----C-cHHHHHHHHHH-HHHcCCeEEEEEEEeeCCc-----cCHHHHHHHHHHHHHcC
Confidence 445778899999998887532 2 12333333333 3344553 2444 2342 2466666655 33
Q ss_pred CCEEEEEeC----CHHHHHHHHhhc---CCCCEEEEeCCcch------hhhhhccCC---cccccccc----ccccHHHH
Q psy11975 601 ENIRGVKDT----DNIKLANMANQT---KDLNFSVFAGSAGY------LLSGLLVGC---AGGINALS----AVLGGPIC 660 (786)
Q Consensus 601 PNVVGIKDS----Dl~ri~~ll~~~---~~~df~Vf~G~Del------LL~aL~~GA---dG~Isg~a----N~~Pel~v 660 (786)
...+.|||+ .+.++.+++++. .+-.+. +-+++.. .+.++.+|+ +++++|++ |..-+.++
T Consensus 169 ad~i~i~Dt~G~l~P~~~~~lv~~lk~~~~~pi~-~H~Hnt~GlA~An~laAieAGa~~vD~ai~glG~~~Gn~~le~vv 247 (593)
T PRK14040 169 VDSLCIKDMAGLLKPYAAYELVSRIKKRVDVPLH-LHCHATTGLSTATLLKAIEAGIDGVDTAISSMSMTYGHSATETLV 247 (593)
T ss_pred CCEEEECCCCCCcCHHHHHHHHHHHHHhcCCeEE-EEECCCCchHHHHHHHHHHcCCCEEEeccccccccccchhHHHHH
Confidence 579999999 566666555422 222333 4445432 456777887 35555544 33333333
Q ss_pred HHHHHHH---cCCHHHHHHHHHHhhhhHH
Q psy11975 661 ELYDLAK---AGKWEEAMKLQHRLVKPDV 686 (786)
Q Consensus 661 aL~eA~~---aGD~eeAreLQ~rL~pLi~ 686 (786)
...+... .=|.+...++.+.+.++..
T Consensus 248 ~~L~~~~~~~gidl~~l~~is~~~~~v~~ 276 (593)
T PRK14040 248 ATLEGTERDTGLDILKLEEIAAYFREVRK 276 (593)
T ss_pred HHHHhcCCCcCCCHHHHHHHHHHHHHHHH
Confidence 3333210 1256666666666665553
No 288
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=46.54 E-value=2.1e+02 Score=33.96 Aligned_cols=127 Identities=12% Similarity=-0.010 Sum_probs=76.9
Q ss_pred cCCCCeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHhcCCCCEEEEeCCCCcCCccC
Q psy11975 511 REWQADLLKPQKHTTTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDIS 590 (786)
Q Consensus 511 vaGRVPVIaGVGa~ST~EAIELAr~Ae~aGADAVmViPPyY~kps~S~eeLv~YFraIAeAtdLPIiLYNiP~~TGv~LS 590 (786)
..||+-|.++++. .++.+.++...++|+|.+.+-...- ..+.+++..+.|.+..+.++.| ..|.-++
T Consensus 228 ~~grL~V~~av~~---~~~~~ra~~Lv~aGvd~i~vd~a~g-----~~~~~~~~i~~ir~~~~~~~~V-----~aGnV~t 294 (502)
T PRK07107 228 SSKRYVVGAGINT---RDYAERVPALVEAGADVLCIDSSEG-----YSEWQKRTLDWIREKYGDSVKV-----GAGNVVD 294 (502)
T ss_pred hccCeeeeeccCh---hhHHHHHHHHHHhCCCeEeecCccc-----ccHHHHHHHHHHHHhCCCCceE-----EeccccC
Confidence 3467778887743 5789999999999999998853221 2344567777777766533221 2466788
Q ss_pred HHHHHHHHhCCCEEEEEeC------------------CHHHHHHHHhhc------CCCCEEEE-eCCc---chhhhhhcc
Q psy11975 591 VDTLVKLAHHENIRGVKDT------------------DNIKLANMANQT------KDLNFSVF-AGSA---GYLLSGLLV 642 (786)
Q Consensus 591 pelL~rLAeiPNVVGIKDS------------------Dl~ri~~ll~~~------~~~df~Vf-~G~D---elLL~aL~~ 642 (786)
++....|.+. ..-+||-+ .+..+.++.+.. .+.++.|+ .|.= ...+-+|++
T Consensus 295 ~e~a~~li~a-GAd~I~vg~g~Gs~c~tr~~~~~g~~~~~ai~~~~~a~~~~~~~~g~~~~viadgGir~~gdi~KAla~ 373 (502)
T PRK07107 295 REGFRYLAEA-GADFVKVGIGGGSICITREQKGIGRGQATALIEVAKARDEYFEETGVYIPICSDGGIVYDYHMTLALAM 373 (502)
T ss_pred HHHHHHHHHc-CCCEEEECCCCCcCcccccccCCCccHHHHHHHHHHHHHHHHhhcCCcceEEEcCCCCchhHHHHHHHc
Confidence 9998888753 22333332 122333333211 13235543 3321 236778999
Q ss_pred CCccccccc
Q psy11975 643 GCAGGINAL 651 (786)
Q Consensus 643 GAdG~Isg~ 651 (786)
||+.+|.|.
T Consensus 374 GA~~vm~G~ 382 (502)
T PRK07107 374 GADFIMLGR 382 (502)
T ss_pred CCCeeeeCh
Confidence 999998884
No 289
>COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism]
Probab=46.24 E-value=73 Score=34.73 Aligned_cols=106 Identities=15% Similarity=0.133 Sum_probs=66.6
Q ss_pred HHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHhcCCCCEEEEeCCCCcCCccCHHHHHHHHhC-CCEEEEEeC-
Q psy11975 532 LTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHH-ENIRGVKDT- 609 (786)
Q Consensus 532 LAr~Ae~aGADAVmViPPyY~kps~S~eeLv~YFraIAeAtdLPIiLYNiP~~TGv~LSpelL~rLAei-PNVVGIKDS- 609 (786)
....|..+|||||+++.-. . +++++.+.+. .|...++.+++=-. +.+.+.+..+. ..|+||=.-
T Consensus 121 QI~~Ar~~GADavLLI~~~---L--~~~~l~el~~-~A~~LGm~~LVEVh--------~~eEl~rAl~~ga~iIGINnRd 186 (254)
T COG0134 121 QIYEARAAGADAVLLIVAA---L--DDEQLEELVD-RAHELGMEVLVEVH--------NEEELERALKLGAKIIGINNRD 186 (254)
T ss_pred HHHHHHHcCcccHHHHHHh---c--CHHHHHHHHH-HHHHcCCeeEEEEC--------CHHHHHHHHhCCCCEEEEeCCC
Confidence 3456677899999999533 2 3666655554 56677876664321 25677777664 679999776
Q ss_pred ------CHHHHHHHHhhcCCCCEEEEe--CCcc--hhhhhhccCCcccccccc
Q psy11975 610 ------DNIKLANMANQTKDLNFSVFA--GSAG--YLLSGLLVGCAGGINALS 652 (786)
Q Consensus 610 ------Dl~ri~~ll~~~~~~df~Vf~--G~De--lLL~aL~~GAdG~Isg~a 652 (786)
|+....++... .+.+..+.. |-.. .+......|++|+.-|.+
T Consensus 187 L~tf~vdl~~t~~la~~-~p~~~~~IsESGI~~~~dv~~l~~~ga~a~LVG~s 238 (254)
T COG0134 187 LTTLEVDLETTEKLAPL-IPKDVILISESGISTPEDVRRLAKAGADAFLVGEA 238 (254)
T ss_pred cchheecHHHHHHHHhh-CCCCcEEEecCCCCCHHHHHHHHHcCCCEEEecHH
Confidence 67777777663 334433322 2221 244455689999988876
No 290
>PLN02489 homocysteine S-methyltransferase
Probab=46.17 E-value=3.7e+02 Score=30.16 Aligned_cols=97 Identities=12% Similarity=0.138 Sum_probs=60.6
Q ss_pred CCeEEEeCC---------CCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHhcCCCCEEEEeCCCC
Q psy11975 514 QADLLKPQK---------HTTTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFV 584 (786)
Q Consensus 514 RVPVIaGVG---------a~ST~EAIELAr~Ae~aGADAVmViPPyY~kps~S~eeLv~YFraIAeAtdLPIiLYNiP~~ 584 (786)
++|+++.+. +.+..++++.+.. ..++++|.+-. . + .+.+..-++.+...+++||++|-+.+.
T Consensus 208 ~~p~~iS~t~~~~~~l~~G~~~~~~~~~~~~--~~~~~~iGiNC--~---~--p~~~~~~l~~l~~~~~~pl~vyPNaG~ 278 (335)
T PLN02489 208 KIPAWISFNSKDGVNVVSGDSLLECASIADS--CKKVVAVGINC--T---P--PRFIHGLILSIRKVTSKPIVVYPNSGE 278 (335)
T ss_pred CCeEEEEEEeCCCCccCCCCcHHHHHHHHHh--cCCceEEEecC--C---C--HHHHHHHHHHHHhhcCCcEEEECCCCC
Confidence 467666543 3456677766642 24677777664 1 2 677888888888888999999998542
Q ss_pred c----------CCccCHHHHHHHH----hC-CCEEEEEeC-CHHHHHHHHh
Q psy11975 585 T----------NIDISVDTLVKLA----HH-ENIRGVKDT-DNIKLANMAN 619 (786)
Q Consensus 585 T----------Gv~LSpelL~rLA----ei-PNVVGIKDS-Dl~ri~~ll~ 619 (786)
. ..+++++.+.+.+ +. -+|+|=--. .+++++++.+
T Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ga~iIGGCCgt~P~hI~al~~ 329 (335)
T PLN02489 279 TYDGEAKEWVESTGVSDEDFVSYVNKWRDAGASLIGGCCRTTPNTIRAISK 329 (335)
T ss_pred CCCCccCcccCCCCCCHHHHHHHHHHHHHCCCcEEeeCCCCCHHHHHHHHH
Confidence 1 2335666666655 22 355555444 6777666654
No 291
>PRK12457 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=46.15 E-value=3.6e+02 Score=30.07 Aligned_cols=92 Identities=16% Similarity=0.092 Sum_probs=65.6
Q ss_pred CeEEEeC-CCCCHHHHHHHHHHHH----HcCCCEEEE--------cCCCCCCCCCCHHHHHHHHHHHHhcCCCCEE----
Q psy11975 515 ADLLKPQ-KHTTTRATIDLTQKAA----KAGANAALI--------LCPYYFQKKMTEDLIYEHFISVADNSPIPVI---- 577 (786)
Q Consensus 515 VPVIaGV-Ga~ST~EAIELAr~Ae----~aGADAVmV--------iPPyY~kps~S~eeLv~YFraIAeAtdLPIi---- 577 (786)
+-||+|- .-.+-+.+++.|+..+ ++|+..+-= +.||.|.-. -.++-+++++++.+.+++||+
T Consensus 17 ~~~iaGPCsvEs~e~~~~iA~~lk~i~~~~g~~~~fK~sf~KapRTSp~sFqG~-G~eeGL~iL~~vk~~~GlpvvTeV~ 95 (281)
T PRK12457 17 FVLFGGINVLESLDFTLDVCGEYVEVTRKLGIPFVFKASFDKANRSSIHSYRGV-GLDEGLRIFEEVKARFGVPVITDVH 95 (281)
T ss_pred eEEEecCCcccCHHHHHHHHHHHHHHHHHCCCcEEeeeccCCCCCCCCCCCCCC-CHHHHHHHHHHHHHHHCCceEEEeC
Confidence 4566654 4466677777787754 689977544 345555432 257789999999999999987
Q ss_pred -------------EEeCCCCcCCccCHHHHHHHHhCCCEEEEEeC
Q psy11975 578 -------------IYNNTFVTNIDISVDTLVKLAHHENIRGVKDT 609 (786)
Q Consensus 578 -------------LYNiP~~TGv~LSpelL~rLAeiPNVVGIKDS 609 (786)
+..+|.+.-.+ .++|.++++....|-+|-.
T Consensus 96 ~~~~~~~~ae~vDilQIgAr~~rn--tdLL~a~~~t~kpV~lKrG 138 (281)
T PRK12457 96 EVEQAAPVAEVADVLQVPAFLARQ--TDLVVAIAKTGKPVNIKKP 138 (281)
T ss_pred CHHHHHHHhhhCeEEeeCchhhch--HHHHHHHhccCCeEEecCC
Confidence 34566654333 5888888888999999988
No 292
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=46.14 E-value=1.3e+02 Score=33.12 Aligned_cols=81 Identities=14% Similarity=0.140 Sum_probs=51.6
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEEEcCCCCC------------CCCCCHHHHHHHHHHHHhcCCCCEEEEeCCCC------
Q psy11975 523 HTTTRATIDLTQKAAKAGANAALILCPYYF------------QKKMTEDLIYEHFISVADNSPIPVIIYNNTFV------ 584 (786)
Q Consensus 523 a~ST~EAIELAr~Ae~aGADAVmViPPyY~------------kps~S~eeLv~YFraIAeAtdLPIiLYNiP~~------ 584 (786)
+.+++...+.+..|++.|.+.+++=.--+. .+..+-++|++|=+ +-++.|+|+-.=..
T Consensus 28 g~~t~~~k~yIDfAa~~G~eYvlvD~GW~~~~~~~~~d~~~~~~~~dl~elv~Ya~----~KgVgi~lw~~~~~~~~~~~ 103 (273)
T PF10566_consen 28 GATTETQKRYIDFAAEMGIEYVLVDAGWYGWEKDDDFDFTKPIPDFDLPELVDYAK----EKGVGIWLWYHSETGGNVAN 103 (273)
T ss_dssp SSSHHHHHHHHHHHHHTT-SEEEEBTTCCGS--TTT--TT-B-TT--HHHHHHHHH----HTT-EEEEEEECCHTTBHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEeccccccccccccccccccCCccCHHHHHHHHH----HcCCCEEEEEeCCcchhhHh
Confidence 569999999999999999999999665541 12234667777743 45666766544222
Q ss_pred cCCccCHHHHHHHHhCCCEEEEEeC
Q psy11975 585 TNIDISVDTLVKLAHHENIRGVKDT 609 (786)
Q Consensus 585 TGv~LSpelL~rLAeiPNVVGIKDS 609 (786)
.-..+ .+.|.++.+. .|.|||..
T Consensus 104 ~~~~~-~~~f~~~~~~-Gv~GvKid 126 (273)
T PF10566_consen 104 LEKQL-DEAFKLYAKW-GVKGVKID 126 (273)
T ss_dssp HHCCH-HHHHHHHHHC-TEEEEEEE
T ss_pred HHHHH-HHHHHHHHHc-CCCEEeeC
Confidence 11123 4455555555 89999988
No 293
>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D ....
Probab=46.14 E-value=30 Score=34.69 Aligned_cols=56 Identities=18% Similarity=0.217 Sum_probs=0.0
Q ss_pred EEeCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCC--CCCCCHHHHHHHHHHHHhcCCCCEEE
Q psy11975 518 LKPQKHTTTRATIDLTQKAAKAGANAALILCPYYF--QKKMTEDLIYEHFISVADNSPIPVII 578 (786)
Q Consensus 518 IaGVGa~ST~EAIELAr~Ae~aGADAVmViPPyY~--kps~S~eeLv~YFraIAeAtdLPIiL 578 (786)
++|+++.+.+| ++.|.+.|+|.+.+.|-|-. +++ ...-=.+.++++++.+++||+.
T Consensus 97 ~ig~S~h~~~e----~~~a~~~g~dYv~~gpvf~T~sk~~-~~~~g~~~l~~~~~~~~~pv~A 154 (180)
T PF02581_consen 97 IIGASCHSLEE----AREAEELGADYVFLGPVFPTSSKPG-APPLGLDGLREIARASPIPVYA 154 (180)
T ss_dssp EEEEEESSHHH----HHHHHHCTTSEEEEETSS--SSSSS--TTCHHHHHHHHHHHTSSCEEE
T ss_pred EEEeecCcHHH----HHHhhhcCCCEEEECCccCCCCCcc-ccccCHHHHHHHHHhCCCCEEE
No 294
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=46.04 E-value=87 Score=33.82 Aligned_cols=73 Identities=7% Similarity=-0.011 Sum_probs=43.6
Q ss_pred EeCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHhcCCCCEEEEeCCCCcCCccCHHHHHHHH
Q psy11975 519 KPQKHTTTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLA 598 (786)
Q Consensus 519 aGVGa~ST~EAIELAr~Ae~aGADAVmViPPyY~kps~S~eeLv~YFraIAeAtdLPIiLYNiP~~TGv~LSpelL~rLA 598 (786)
+.+.....+++.+.++.|++.|.. |.+..-..+.. +++.+.++++.+.+. +...+ .++...|. +.|+.+.+|.
T Consensus 101 i~~~~~~~~~~~~~i~~ak~~G~~-v~~~~~~a~~~--~~~~~~~~~~~~~~~-g~~~i--~l~DT~G~-~~P~~v~~lv 173 (266)
T cd07944 101 VAFHKHEFDEALPLIKAIKEKGYE-VFFNLMAISGY--SDEELLELLELVNEI-KPDVF--YIVDSFGS-MYPEDIKRII 173 (266)
T ss_pred EecccccHHHHHHHHHHHHHCCCe-EEEEEEeecCC--CHHHHHHHHHHHHhC-CCCEE--EEecCCCC-CCHHHHHHHH
Confidence 455566788888888888888864 33333333343 377778877777653 43332 33445564 5566555554
No 295
>cd06346 PBP1_ABC_ligand_binding_like_11 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=46.03 E-value=4e+02 Score=28.38 Aligned_cols=99 Identities=12% Similarity=-0.079 Sum_probs=63.0
Q ss_pred eEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHhcCCCCEEEEeCCCCcCCccCHHHHH
Q psy11975 516 DLLKPQKHTTTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLV 595 (786)
Q Consensus 516 PVIaGVGa~ST~EAIELAr~Ae~aGADAVmViPPyY~kps~S~eeLv~YFraIAeAtdLPIiLYNiP~~TGv~LSpelL~ 595 (786)
+.+..+......++..+++.+.+.|...+.++..-+- . -..+.+.|+..+++.++.|+....-.....+++ ..+.
T Consensus 112 ~~~fr~~~~~~~~~~~l~~~~~~~~~~~vail~~~~~-~---g~~~~~~~~~~~~~~G~~vv~~~~~~~~~~d~~-~~v~ 186 (312)
T cd06346 112 GLFFRTAPSDALQGQALAQLAAERGYKSVATTYINND-Y---GVGLADAFTKAFEALGGTVTNVVAHEEGKSSYS-SEVA 186 (312)
T ss_pred ceEEEecCCcHHHHHHHHHHHHHcCCCeEEEEEccCc-h---hhHHHHHHHHHHHHcCCEEEEEEeeCCCCCCHH-HHHH
Confidence 4556655566667788888898899998888854321 1 456788888888888888775332222334555 4566
Q ss_pred HHH-hCCCEEEEEeC--CHHHHHHHHh
Q psy11975 596 KLA-HHENIRGVKDT--DNIKLANMAN 619 (786)
Q Consensus 596 rLA-eiPNVVGIKDS--Dl~ri~~ll~ 619 (786)
+|. .-|.++.+=.. +...+.+-++
T Consensus 187 ~l~~~~pd~v~~~~~~~~~~~~~~~~~ 213 (312)
T cd06346 187 AAAAGGPDALVVIGYPETGSGILRSAY 213 (312)
T ss_pred HHHhcCCCEEEEecccchHHHHHHHHH
Confidence 665 45777765544 5555544333
No 296
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=45.82 E-value=52 Score=37.30 Aligned_cols=55 Identities=11% Similarity=0.048 Sum_probs=34.7
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHhcCCCCEEE
Q psy11975 523 HTTTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVII 578 (786)
Q Consensus 523 a~ST~EAIELAr~Ae~aGADAVmViPPyY~kps~S~eeLv~YFraIAeAtdLPIiL 578 (786)
+.+.+|++++++.++++|+|.+-+....|..+..... -..+-+.+-+++++||+.
T Consensus 231 g~~~~e~~~~~~~l~~~gvd~i~vs~g~~~~~~~~~~-~~~~~~~~k~~~~~pv~~ 285 (361)
T cd04747 231 ADTPDELEALLAPLVDAGVDIFHCSTRRFWEPEFEGS-ELNLAGWTKKLTGLPTIT 285 (361)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEecCCCccCCCcCcc-chhHHHHHHHHcCCCEEE
Confidence 4678999999999999999999776543222210000 112234455566888876
No 297
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=45.82 E-value=2.5e+02 Score=29.50 Aligned_cols=131 Identities=15% Similarity=0.111 Sum_probs=75.8
Q ss_pred EEEeCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHhcCCCCEEEEeCCCCcCCccCHHHHHH
Q psy11975 517 LLKPQKHTTTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVK 596 (786)
Q Consensus 517 VIaGVGa~ST~EAIELAr~Ae~aGADAVmViPPyY~kps~S~eeLv~YFraIAeAtdLPIiLYNiP~~TGv~LSpelL~r 596 (786)
+++|+|.--+.+ .++.|.++||+.++ .|.+ +++++++.+ +.++|++ | |. ++|..+.+
T Consensus 56 ~~vGAGTVl~~e---~a~~ai~aGA~Fiv--SP~~------~~~vi~~a~----~~~i~~i----P---G~-~TptEi~~ 112 (201)
T PRK06015 56 AIVGAGTILNAK---QFEDAAKAGSRFIV--SPGT------TQELLAAAN----DSDVPLL----P---GA-ATPSEVMA 112 (201)
T ss_pred CEEeeEeCcCHH---HHHHHHHcCCCEEE--CCCC------CHHHHHHHH----HcCCCEe----C---CC-CCHHHHHH
Confidence 888988865554 56788899999654 3433 466777755 3445543 4 43 66666655
Q ss_pred HHhCCCEEEEEeC---C---HHHHHHHHhhcCCCCEEEE--eCCc-chhhhhhccCCccccccccccccHHHHHHHHHHH
Q psy11975 597 LAHHENIRGVKDT---D---NIKLANMANQTKDLNFSVF--AGSA-GYLLSGLLVGCAGGINALSAVLGGPICELYDLAK 667 (786)
Q Consensus 597 LAeiPNVVGIKDS---D---l~ri~~ll~~~~~~df~Vf--~G~D-elLL~aL~~GAdG~Isg~aN~~Pel~vaL~eA~~ 667 (786)
..+.. ..-||.= . ...+..+.. .-+++.++ .|-+ +.+-+.|.+|+..+++| +++++..+ ..
T Consensus 113 A~~~G-a~~vK~FPa~~~GG~~yikal~~--plp~~~l~ptGGV~~~n~~~~l~ag~~~~~gg-s~l~~~~~------~~ 182 (201)
T PRK06015 113 LREEG-YTVLKFFPAEQAGGAAFLKALSS--PLAGTFFCPTGGISLKNARDYLSLPNVVCVGG-SWVAPKEL------VA 182 (201)
T ss_pred HHHCC-CCEEEECCchhhCCHHHHHHHHh--hCCCCcEEecCCCCHHHHHHHHhCCCeEEEEc-hhhCCchh------hh
Confidence 55432 2345655 1 355555543 23455544 3443 24667788888866664 45556432 45
Q ss_pred cCCHHHHHHHHHH
Q psy11975 668 AGKWEEAMKLQHR 680 (786)
Q Consensus 668 aGD~eeAreLQ~r 680 (786)
++|+++..+.-++
T Consensus 183 ~~~~~~i~~~a~~ 195 (201)
T PRK06015 183 AGDWAGITKLAAE 195 (201)
T ss_pred cccHHHHHHHHHH
Confidence 6777665554333
No 298
>PRK02610 histidinol-phosphate aminotransferase; Provisional
Probab=45.73 E-value=2.7e+02 Score=30.84 Aligned_cols=122 Identities=16% Similarity=0.129 Sum_probs=66.7
Q ss_pred EEEeCCCCCHHHHHHHHHHHHH-cCCCEEEEcCCCCCCCC---------------------CCHHHHHHHHHHHHhcCCC
Q psy11975 517 LLKPQKHTTTRATIDLTQKAAK-AGANAALILCPYYFQKK---------------------MTEDLIYEHFISVADNSPI 574 (786)
Q Consensus 517 VIaGVGa~ST~EAIELAr~Ae~-aGADAVmViPPyY~kps---------------------~S~eeLv~YFraIAeAtdL 574 (786)
|+++.|+ .+++.++-.+.- .|-+.|++..|.|.... ++.+++.+.++... .-+.
T Consensus 94 I~it~Ga---~~al~~~~~~~~~~g~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~~~~~~-~~~~ 169 (374)
T PRK02610 94 ISVGNGS---DELIRSLLIATCLGGEGSILVAEPTFSMYGILAQTLGIPVVRVGRDPETFEIDLAAAQSAIEQTQ-NPPV 169 (374)
T ss_pred EEEcCCh---HHHHHHHHHHHcCCCCCeEEEcCCChHHHHHHHHHcCCEEEEecCCcccCCCCHHHHHHHHHhhc-CCCc
Confidence 6665555 667775544433 34346888888873210 11222222221110 0245
Q ss_pred CEEEEeCCCC-cCCccCHHHHHHHHhC-CCEEEEEeC---CHHH--HHHHHhhcCCCCEEEEeCCcchh-hhhhccCC
Q psy11975 575 PVIIYNNTFV-TNIDISVDTLVKLAHH-ENIRGVKDT---DNIK--LANMANQTKDLNFSVFAGSAGYL-LSGLLVGC 644 (786)
Q Consensus 575 PIiLYNiP~~-TGv~LSpelL~rLAei-PNVVGIKDS---Dl~r--i~~ll~~~~~~df~Vf~G~DelL-L~aL~~GA 644 (786)
-+++.++|.. ||..++.+.+.+|+++ .++.=|=|+ ++.. ....+. ..+++-++.+..-.+ +++++.|.
T Consensus 170 k~i~l~~P~NPTG~~~s~~~l~~l~~~~~~~~iI~De~Y~~~~~~~~~~~~~--~~~~~ivi~SfSK~~g~~GlRiG~ 245 (374)
T PRK02610 170 RVVFVVHPNSPTGNPLTAAELEWLRSLPEDILVVIDEAYFEFSQTTLVGELA--QHPNWVILRTFSKAFRLAAHRVGY 245 (374)
T ss_pred eEEEEeCCCCCCCCCCCHHHHHHHHhccCCcEEEEeccccccCccchHHHHh--cCCCEEEEEecchhccCcccceee
Confidence 6677677765 8999999999999864 366667777 4321 111111 124455555555555 66676654
No 299
>PRK02412 aroD 3-dehydroquinate dehydratase; Provisional
Probab=45.71 E-value=4.1e+02 Score=28.49 Aligned_cols=107 Identities=9% Similarity=0.025 Sum_probs=67.7
Q ss_pred CCCCeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHhcC-CCCEEEEeCCCCcCC--c
Q psy11975 512 EWQADLLKPQKHTTTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNS-PIPVIIYNNTFVTNI--D 588 (786)
Q Consensus 512 aGRVPVIaGVGa~ST~EAIELAr~Ae~aGADAVmViPPyY~kps~S~eeLv~YFraIAeAt-dLPIiLYNiP~~TGv--~ 588 (786)
.|+..|++-+.+.+.+|.++.++.+.+.|||.|=+=-=++.... +.+.+..-..++.+.. ++|+++=.-+..-|- .
T Consensus 13 ~~~~~i~v~l~~~~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~-~~~~~~~~~~~l~~~~~~~PiI~T~R~~~eGG~~~ 91 (253)
T PRK02412 13 EGAPKIIVPIMGKTLEEVLAEALAISKYDADIIEWRADFLEKIS-DVESVLAAAPAIREKFAGKPLLFTFRTAKEGGEIA 91 (253)
T ss_pred CCCcEEEEEeCCCCHHHHHHHHHHHhhcCCCEEEEEechhhccC-CHHHHHHHHHHHHHhcCCCcEEEEECChhhCCCCC
Confidence 35556777888999999999999999999999977766654432 3566666677776655 689998665554333 3
Q ss_pred cCHHHH----HHHHhC--CCEEEEEeC-CHHHHHHHHh
Q psy11975 589 ISVDTL----VKLAHH--ENIRGVKDT-DNIKLANMAN 619 (786)
Q Consensus 589 LSpelL----~rLAei--PNVVGIKDS-Dl~ri~~ll~ 619 (786)
.+.+.. .++++. +..+=|-.. +...+.+++.
T Consensus 92 ~~~~~~~~ll~~~~~~~~~d~vDiEl~~~~~~~~~l~~ 129 (253)
T PRK02412 92 LSDEEYLALIKAVIKSGLPDYIDVELFSGKDVVKEMVA 129 (253)
T ss_pred CCHHHHHHHHHHHHhcCCCCEEEEeccCChHHHHHHHH
Confidence 444433 333332 345544443 4344444433
No 300
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=45.69 E-value=4.4e+02 Score=28.80 Aligned_cols=117 Identities=15% Similarity=0.084 Sum_probs=75.1
Q ss_pred HHHHHHHHHcCCCEEEEcCCCCC---CCCCCHHHHHHHHHHHHhcCCCCEEEEeCCCCcCCccCHHHHHHHH-------h
Q psy11975 530 IDLTQKAAKAGANAALILCPYYF---QKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLA-------H 599 (786)
Q Consensus 530 IELAr~Ae~aGADAVmViPPyY~---kps~S~eeLv~YFraIAeAtdLPIiLYNiP~~TGv~LSpelL~rLA-------e 599 (786)
++-|..|++.|||.|=+..-... .|+ +..++.+.+.+++||++-=-|-..++.++.+.+..+. +
T Consensus 11 ~~~a~~A~~~GAdRiELc~~L~~GGlTPS------~g~i~~~~~~~~ipv~vMIRPR~gdF~Ys~~E~~~M~~di~~~~~ 84 (248)
T PRK11572 11 MECALTAQQAGADRIELCAAPKEGGLTPS------LGVLKSVRERVTIPVHPIIRPRGGDFCYSDGEFAAMLEDIATVRE 84 (248)
T ss_pred HHHHHHHHHcCCCEEEEccCcCCCCcCCC------HHHHHHHHHhcCCCeEEEEecCCCCCCCCHHHHHHHHHHHHHHHH
Confidence 45677899999999977654332 233 3344555566789998887886667778887766553 1
Q ss_pred --C-CCEEEEEeC----CHHHHHHHHhhcCCCCEEEEeCCcch-----hh-hhhccCCcccccccc
Q psy11975 600 --H-ENIRGVKDT----DNIKLANMANQTKDLNFSVFAGSAGY-----LL-SGLLVGCAGGINALS 652 (786)
Q Consensus 600 --i-PNVVGIKDS----Dl~ri~~ll~~~~~~df~Vf~G~Del-----LL-~aL~~GAdG~Isg~a 652 (786)
. .-|.|+=+. |.+.+.++++...+-++.+--..|.. .+ ....+|++.++++.+
T Consensus 85 ~GadGvV~G~L~~dg~vD~~~~~~Li~~a~~~~vTFHRAfD~~~d~~~al~~l~~lG~~rILTSGg 150 (248)
T PRK11572 85 LGFPGLVTGVLDVDGHVDMPRMRKIMAAAGPLAVTFHRAFDMCANPLNALKQLADLGVARILTSGQ 150 (248)
T ss_pred cCCCEEEEeeECCCCCcCHHHHHHHHHHhcCCceEEechhhccCCHHHHHHHHHHcCCCEEECCCC
Confidence 2 346666555 88999999885433345444444432 22 234579888876654
No 301
>PRK13475 ribulose bisphosphate carboxylase; Provisional
Probab=45.65 E-value=2.3e+02 Score=33.39 Aligned_cols=37 Identities=14% Similarity=-0.026 Sum_probs=28.4
Q ss_pred cCCCCeEEEeCCCCCHHHHHHHHHHHHHc-CCC----EEEEc
Q psy11975 511 REWQADLLKPQKHTTTRATIDLTQKAAKA-GAN----AALIL 547 (786)
Q Consensus 511 vaGRVPVIaGVGa~ST~EAIELAr~Ae~a-GAD----AVmVi 547 (786)
++.+.--.+++++.+++|.++.++.|+++ |+. ++|+-
T Consensus 222 TG~~~~y~~NiTa~~~~em~~ra~~a~e~~G~~~~~~~vmv~ 263 (443)
T PRK13475 222 TGEAKLFSANITADDHYEMIARGEYILETFGENADHVAFLVD 263 (443)
T ss_pred hCCceeEeccCCCCCHHHHHHHHHHHHHhcCCCccceEEEEc
Confidence 33334445799988999999999999998 988 55554
No 302
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=45.65 E-value=2.9e+02 Score=29.37 Aligned_cols=125 Identities=9% Similarity=0.002 Sum_probs=65.9
Q ss_pred CCeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHhcCCCCEEEEeCCCC---------
Q psy11975 514 QADLLKPQKHTTTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFV--------- 584 (786)
Q Consensus 514 RVPVIaGVGa~ST~EAIELAr~Ae~aGADAVmViPPyY~kps~S~eeLv~YFraIAeAtdLPIiLYNiP~~--------- 584 (786)
.+||.+|-|=.+.+++ +.+.++||+.|++-.-.+.. + ++++++++..+--|++- +...
T Consensus 76 ~~pi~vGGGIrs~e~v----~~~l~~Ga~kvvigt~a~~~----~----~~l~~~~~~fg~~ivvs-lD~~~g~v~~~gw 142 (234)
T PRK13587 76 TKDIEVGGGIRTKSQI----MDYFAAGINYCIVGTKGIQD----T----DWLKEMAHTFPGRIYLS-VDAYGEDIKVNGW 142 (234)
T ss_pred CCeEEEcCCcCCHHHH----HHHHHCCCCEEEECchHhcC----H----HHHHHHHHHcCCCEEEE-EEeeCCEEEecCC
Confidence 3689998888777764 44556899999876543322 2 34444444432112211 1111
Q ss_pred -cCCccCHHHH-HHHHhCC--CEEEEEeC--------CHHHHHHHHhhcCCCCEEEEeCCc--chhhhhhccCCcccccc
Q psy11975 585 -TNIDISVDTL-VKLAHHE--NIRGVKDT--------DNIKLANMANQTKDLNFSVFAGSA--GYLLSGLLVGCAGGINA 650 (786)
Q Consensus 585 -TGv~LSpelL-~rLAeiP--NVVGIKDS--------Dl~ri~~ll~~~~~~df~Vf~G~D--elLL~aL~~GAdG~Isg 650 (786)
....+++..+ .++.+.+ .|+..-.+ |+..+.++.+. ..-.+.+-.|-- +.+...+..|++|++.|
T Consensus 143 ~~~~~~~~~~~~~~~~~~g~~~ii~tdi~~dGt~~G~~~~li~~l~~~-~~ipvi~~GGi~s~edi~~l~~~G~~~vivG 221 (234)
T PRK13587 143 EEDTELNLFSFVRQLSDIPLGGIIYTDIAKDGKMSGPNFELTGQLVKA-TTIPVIASGGIRHQQDIQRLASLNVHAAIIG 221 (234)
T ss_pred cccCCCCHHHHHHHHHHcCCCEEEEecccCcCCCCccCHHHHHHHHHh-CCCCEEEeCCCCCHHHHHHHHHcCCCEEEEh
Confidence 1234444444 4444432 34333332 46666677652 222333333332 23556677899999998
Q ss_pred cc
Q psy11975 651 LS 652 (786)
Q Consensus 651 ~a 652 (786)
.+
T Consensus 222 ~a 223 (234)
T PRK13587 222 KA 223 (234)
T ss_pred HH
Confidence 75
No 303
>cd08025 RNR_PFL_like_DUF711 Uncharacterized proteins with similarity to Ribonucleotide reductase and Pyruvate formate lyase. This subfamily contains Streptococcus pneumoniae Sp0239 and similar uncharacterized proteins. Sp0239 is structurally similar to ribonucleotide reductase (RNR) and pyruvate formate lyase (PFL), which are believed to have diverged from a common ancestor. RNR and PFL possess a ten-stranded alpha-beta barrel domain that hosts the active site, and are radical enzymes. RNRs are found in all organisms and provide the only mechanism by which nucleotides are converted to deoxynucleotides. PFL is an essential enzyme in anaerobic bacteria that catalyzes the conversion of pyruvate and CoA to acteylCoA and formate.
Probab=45.60 E-value=5.6e+02 Score=29.96 Aligned_cols=130 Identities=15% Similarity=0.069 Sum_probs=64.6
Q ss_pred HHHHHHHHcCCCEEE---EcCCCCCCCCCCHHHHHHHHHHHHhcCCCCEEEEeCCCCcCCccCHHHHHHHHhCCCEEEEE
Q psy11975 531 DLTQKAAKAGANAAL---ILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVK 607 (786)
Q Consensus 531 ELAr~Ae~aGADAVm---ViPPyY~kps~S~eeLv~YFraIAeAtdLPIiLYNiP~~TGv~LSpelL~rLAeiPNVVGIK 607 (786)
.+=+.|++.|+|.+- .+-..-+..+ ++.+++-.-++...++.=.--.|+- .+...|.++.+.+++++
T Consensus 95 ~Ld~aa~~~gvdfigGfsalv~kG~~~~--d~~lI~sipeaL~~t~~v~ssVnv~-st~~GIn~dav~~~~~~------- 164 (400)
T cd08025 95 TLDKAAKEVGVDFIGGFSALVQKGFTRG--DRALIESIPEALASTERVCSSVNVA-STKAGINMDAVKLMGEI------- 164 (400)
T ss_pred HHHHHHHHCCCceeehhhhhHhcCCCcc--cHHHHHHHHHHHHhcCceeeEEeec-ccccCCCHHHHHHHHHH-------
Confidence 344556778999864 1111222233 6777777766666665444445542 23333456777666532
Q ss_pred eCCHHHHHHHHhh----cCCCCEEEEeCCcchhhhhhccCCcccc-----ccccccccHHHHHHHHHHHcCCHHHHHHH
Q psy11975 608 DTDNIKLANMANQ----TKDLNFSVFAGSAGYLLSGLLVGCAGGI-----NALSAVLGGPICELYDLAKAGKWEEAMKL 677 (786)
Q Consensus 608 DSDl~ri~~ll~~----~~~~df~Vf~G~DelLL~aL~~GAdG~I-----sg~aN~~Pel~vaL~eA~~aGD~eeAreL 677 (786)
+.++.+. ....+|.||+ +..-.-+.+....+|.= -..+---|..+++..+.....++++..+.
T Consensus 165 ------Ik~~A~~t~~g~g~ar~~V~~-N~~~d~PFmpgA~Hg~ge~d~~i~VGvsgPgvv~~al~~~~~~~~~~~ae~ 236 (400)
T cd08025 165 ------IKETAELTKDGIGCAKLVVFA-NAPEDNPFMAGAFHGVGEPDAVINVGVSGPGVVKAALEELKGADLEELAEE 236 (400)
T ss_pred ------HHHHHhcCCCcccceeEEEEc-cCCCCCCCCCCcccCCCCCCcEEEEcCCCchHHHHHHHhccCCCHHHHHHH
Confidence 1122111 1234677777 33222222222223221 11111248888888877777776654333
No 304
>PF07304 SRA1: Steroid receptor RNA activator (SRA1); InterPro: IPR009917 This entry consists of several hypothetical mammalian steroid receptor RNA activator proteins. The SRA-RNAs encode stable proteins that are widely expressed and upregulated in breast cancer cell lines. SRA-RNA is a steroid receptor co-activator which acts as a functional RNA. This domain is also found at the C terminus of Sec31, a component of the coat protein complex II (COPII, which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). COPII has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules. ; PDB: 2YRU_A.
Probab=45.54 E-value=42 Score=33.78 Aligned_cols=46 Identities=15% Similarity=0.159 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhhhhHHHHHhhhhccccCHHHHHHHHHH
Q psy11975 657 GPICELYDLAKAGKWEEAMKLQHRLVKPDVTVRNVLLMKEMGVPGVRAAMEL 708 (786)
Q Consensus 657 el~vaL~eA~~aGD~eeAreLQ~rL~pLi~~l~~~~~~~~~~ia~lKaaL~l 708 (786)
+.+..|.+|++++|+++|.++|..|.- +.. ..++.++.++|.++..
T Consensus 92 ~~L~~L~~aL~~~d~~~A~~Ih~~L~t--~h~----~E~~~WmvGVKRLI~~ 137 (157)
T PF07304_consen 92 DKLHQLAQALQARDYDAADEIHVDLMT--DHV----DECGNWMVGVKRLIAM 137 (157)
T ss_dssp HHHHHHHHHHHHT-HHHHHHHHHHHHH--SSH----HHHTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh--ccH----HHhhhHHHHHHHHHHH
Confidence 677899999999999999999977652 111 1346678999987763
No 305
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=45.51 E-value=1.9e+02 Score=30.70 Aligned_cols=69 Identities=13% Similarity=0.076 Sum_probs=45.1
Q ss_pred cCCCCeEEEe---CCCC--CHHHHHHHHHHHHHcCC--CEEEEcCCCCCCCCCCHHHHHHHHHHHHhcCCCCEEEEeC
Q psy11975 511 REWQADLLKP---QKHT--TTRATIDLTQKAAKAGA--NAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNN 581 (786)
Q Consensus 511 vaGRVPVIaG---VGa~--ST~EAIELAr~Ae~aGA--DAVmViPPyY~kps~S~eeLv~YFraIAeAtdLPIiLYNi 581 (786)
++..++++++ +-.. .....+++++...+.|+ |+|-+..=++... .+.+.+.+.++.+++ .++||++=.+
T Consensus 115 ~~P~a~l~~Ndy~~~~~~~k~~~~~~~v~~l~~~g~~iDgiGlQ~H~~~~~-~~~~~~~~~l~~~~~-~g~pi~iTE~ 190 (254)
T smart00633 115 ADPDAKLFYNDYNTEEPNAKRQAIYELVKKLKAKGVPIDGIGLQSHLSLGS-PNIAEIRAALDRFAS-LGLEIQITEL 190 (254)
T ss_pred hCCCCEEEEeccCCcCccHHHHHHHHHHHHHHHCCCccceeeeeeeecCCC-CCHHHHHHHHHHHHH-cCCceEEEEe
Confidence 3446778886 3322 23345788888887765 8888875332221 137889999999975 4999998543
No 306
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=45.37 E-value=54 Score=36.65 Aligned_cols=37 Identities=14% Similarity=0.101 Sum_probs=31.0
Q ss_pred CCeEEEeCCCC-CHHHHHHHHHHHHHcCCCEEEEcCCC
Q psy11975 514 QADLLKPQKHT-TTRATIDLTQKAAKAGANAALILCPY 550 (786)
Q Consensus 514 RVPVIaGVGa~-ST~EAIELAr~Ae~aGADAVmViPPy 550 (786)
++||++=++-. +.++..++|+.++++|||++.+..-.
T Consensus 211 ~~PV~vKlsp~~~~~~~~~ia~~l~~~Gadgi~~~nt~ 248 (344)
T PRK05286 211 YVPLLVKIAPDLSDEELDDIADLALEHGIDGVIATNTT 248 (344)
T ss_pred CCceEEEeCCCCCHHHHHHHHHHHHHhCCcEEEEeCCc
Confidence 68999977743 34589999999999999999999865
No 307
>cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain. MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=45.29 E-value=61 Score=36.90 Aligned_cols=30 Identities=17% Similarity=0.159 Sum_probs=21.3
Q ss_pred CeEEE-eCCCCCHHHHHHHHHHHHHcCCCEEEEcCCC
Q psy11975 515 ADLLK-PQKHTTTRATIDLTQKAAKAGANAALILCPY 550 (786)
Q Consensus 515 VPVIa-GVGa~ST~EAIELAr~Ae~aGADAVmViPPy 550 (786)
.|||+ ||. ..+-|+.|.++|||+|.+..--
T Consensus 237 ~pviiKgV~------~~eda~~a~~~G~d~I~VSnhG 267 (361)
T cd04736 237 HKLLVKGIV------TAEDAKRCIELGADGVILSNHG 267 (361)
T ss_pred CCEEEecCC------CHHHHHHHHHCCcCEEEECCCC
Confidence 35555 772 3456778888999999998643
No 308
>PRK08227 autoinducer 2 aldolase; Validated
Probab=44.93 E-value=64 Score=35.26 Aligned_cols=56 Identities=11% Similarity=0.121 Sum_probs=44.7
Q ss_pred CCCCeEEE-eCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHH
Q psy11975 512 EWQADLLK-PQKHTTTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVA 569 (786)
Q Consensus 512 aGRVPVIa-GVGa~ST~EAIELAr~Ae~aGADAVmViPPyY~kps~S~eeLv~YFraIA 569 (786)
++++||++ |=...+.+|.+++++.|.++||.++.+-=-.|..+. +..+.+-+.+|.
T Consensus 190 a~~vPVviaGG~k~~~~~~L~~v~~ai~aGa~Gv~~GRNIfQ~~~--p~~~~~al~~IV 246 (264)
T PRK08227 190 GCPVPIVIAGGKKLPERDALEMCYQAIDEGASGVDMGRNIFQSEH--PVAMIKAVHAVV 246 (264)
T ss_pred cCCCcEEEeCCCCCCHHHHHHHHHHHHHcCCceeeechhhhccCC--HHHHHHHHHHHH
Confidence 35678876 544557899999999999999999999988887765 777777777664
No 309
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=44.83 E-value=4.3e+02 Score=29.50 Aligned_cols=138 Identities=9% Similarity=-0.024 Sum_probs=0.0
Q ss_pred CCeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHhcCCCCEEEEeCCCCcCCccCHHH
Q psy11975 514 QADLLKPQKHTTTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDT 593 (786)
Q Consensus 514 RVPVIaGVGa~ST~EAIELAr~Ae~aGADAVmViPPyY~kps~S~eeLv~YFraIAeAtdLPIiLYNiP~~TGv~LSpel 593 (786)
++++|+++.. ++-|.+|.++|||.|--.---|... -.+.+.|.+.|-... ..=..++.++
T Consensus 112 ~~l~MAD~st------leEal~a~~~Gad~I~TTl~gyT~~---~~~~~~~~~~i~~~i-----------~~~~gyt~~t 171 (283)
T cd04727 112 KVPFVCGARN------LGEALRRISEGAAMIRTKGEAGTGN---VVEAVRHMRAVNGEI-----------RKLQSMSEEE 171 (283)
T ss_pred CCcEEccCCC------HHHHHHHHHCCCCEEEecCCCCCCc---HHHHHHHHHHHHHHH-----------HHHhCCCHHH
Q ss_pred HHHHHhCCCEEEEEeC-CHHHHHHHHhhcCCCCEEEEeCCc---chhhhhhccCCcccccccccc----ccHHHHHHHHH
Q psy11975 594 LVKLAHHENIRGVKDT-DNIKLANMANQTKDLNFSVFAGSA---GYLLSGLLVGCAGGINALSAV----LGGPICELYDL 665 (786)
Q Consensus 594 L~rLAeiPNVVGIKDS-Dl~ri~~ll~~~~~~df~Vf~G~D---elLL~aL~~GAdG~Isg~aN~----~Pel~vaL~eA 665 (786)
+...++.. . +++.+.++.+...-|=+.+-.|.= +.+...+..|++|++.+.+-+ -.+...++.++
T Consensus 172 ~~~~~~~~-------~~d~elLk~l~~~~~iPVV~iAeGGI~Tpena~~v~e~GAdgVaVGSAI~~a~dP~~~tk~f~~a 244 (283)
T cd04727 172 LYAVAKEI-------QAPYELVKETAKLGRLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSENPEKRARAIVEA 244 (283)
T ss_pred HHhhhccc-------CCCHHHHHHHHHhcCCCeEEEEeCCCCCHHHHHHHHHcCCCEEEEcHHhhcCCCHHHHHHHHHHH
Q ss_pred HHc-CCHHHHHHHH
Q psy11975 666 AKA-GKWEEAMKLQ 678 (786)
Q Consensus 666 ~~a-GD~eeAreLQ 678 (786)
+.. +|...-.+.+
T Consensus 245 i~~~~~~~~~~e~~ 258 (283)
T cd04727 245 VTHYDDPEILAEVS 258 (283)
T ss_pred HHhcCCHHHHHHHH
No 310
>cd00578 L-fuc_L-ara-isomerases L-fucose isomerase (FucIase) and L-arabinose isomerase (AI) family; composed of FucIase, AI and similar proteins. FucIase converts L-fucose, an aldohexose, to its ketose form, which prepares it for aldol cleavage (similar to the isomerization of glucose in glycolysis). L-fucose (or 6-deoxy-L-galactose) is found in various oligo- and polysaccharides in mammals, bacteria and plants. AI catalyzes the isomerization of L-arabinose to L-ribulose, the first reaction in its conversion to D-xylulose-5-phosphate, an intermediate in the pentose phosphate pathway, which allows L-arabinose to be used as a carbon source. AI can also convert D-galactose to D-tagatose at elevated temperatures in the presence of divalent metal ions. D-tagatose, rarely found in nature, is of commercial interest as a low-calorie sugar substitute.
Probab=44.80 E-value=2.3e+02 Score=32.62 Aligned_cols=52 Identities=10% Similarity=0.162 Sum_probs=39.9
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHhcCCCCEEEEeCCC
Q psy11975 524 TTTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTF 583 (786)
Q Consensus 524 ~ST~EAIELAr~Ae~aGADAVmViPPyY~kps~S~eeLv~YFraIAeAtdLPIiLYNiP~ 583 (786)
.+.+++.+.++.+.+.++|++++..+.|.. ...+... +...+.||++++.|.
T Consensus 47 ~~~~~~~~~~~~~~~~~~d~ii~~~~tf~~----~~~~~~~----~~~~~~Pvll~a~~~ 98 (452)
T cd00578 47 GTPDEARKAAEEFNEANCDGLIVWMHTFGP----AKMWIAG----LSELRKPVLLLATQF 98 (452)
T ss_pred CCHHHHHHHHHHHhhcCCcEEEEccccccc----HHHHHHH----HHhcCCCEEEEeCCC
Confidence 588899999999998999999998877642 3333333 455689999999986
No 311
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=44.77 E-value=2e+02 Score=29.60 Aligned_cols=118 Identities=14% Similarity=0.045 Sum_probs=62.3
Q ss_pred eEEEeCCCCCH-HHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHhcCCCCEEEEeCCCCcCCccCHHHH
Q psy11975 516 DLLKPQKHTTT-RATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTL 594 (786)
Q Consensus 516 PVIaGVGa~ST-~EAIELAr~Ae~aGADAVmViPPyY~kps~S~eeLv~YFraIAeAtdLPIiLYNiP~~TGv~LSpelL 594 (786)
|+.+++..... ....+.++.+.++|+|+|.+-.- . ...+.+.++ ..++++++- + .+.+.+
T Consensus 55 ~~~v~~i~~~~~~~~~~~~~~~~~~g~d~v~l~~~----~---~~~~~~~~~----~~~i~~i~~-v-------~~~~~~ 115 (236)
T cd04730 55 PFGVNLLVPSSNPDFEALLEVALEEGVPVVSFSFG----P---PAEVVERLK----AAGIKVIPT-V-------TSVEEA 115 (236)
T ss_pred CeEEeEecCCCCcCHHHHHHHHHhCCCCEEEEcCC----C---CHHHHHHHH----HcCCEEEEe-C-------CCHHHH
Confidence 44455555432 35567778888899999987422 2 223333333 246776543 2 134556
Q ss_pred HHHHhCCCEEEEEe------C--------CHHHHHHHHhhcCCCCEEEEeCCc--chhhhhhccCCcccccccccc
Q psy11975 595 VKLAHHENIRGVKD------T--------DNIKLANMANQTKDLNFSVFAGSA--GYLLSGLLVGCAGGINALSAV 654 (786)
Q Consensus 595 ~rLAeiPNVVGIKD------S--------Dl~ri~~ll~~~~~~df~Vf~G~D--elLL~aL~~GAdG~Isg~aN~ 654 (786)
.++.+.. .-+|+. . ++..+.++.+ ..+-.+-+-.|-. +.+...+..|++|++.+.+.+
T Consensus 116 ~~~~~~g-ad~i~~~~~~~~G~~~~~~~~~~~~i~~i~~-~~~~Pvi~~GGI~~~~~v~~~l~~GadgV~vgS~l~ 189 (236)
T cd04730 116 RKAEAAG-ADALVAQGAEAGGHRGTFDIGTFALVPEVRD-AVDIPVIAAGGIADGRGIAAALALGADGVQMGTRFL 189 (236)
T ss_pred HHHHHcC-CCEEEEeCcCCCCCCCccccCHHHHHHHHHH-HhCCCEEEECCCCCHHHHHHHHHcCCcEEEEchhhh
Confidence 6655431 222222 1 1234444443 2222333444443 346677889999999887643
No 312
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=44.72 E-value=70 Score=36.49 Aligned_cols=38 Identities=11% Similarity=0.121 Sum_probs=31.2
Q ss_pred CCeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCC
Q psy11975 514 QADLLKPQKHTTTRATIDLTQKAAKAGANAALILCPYYF 552 (786)
Q Consensus 514 RVPVIaGVGa~ST~EAIELAr~Ae~aGADAVmViPPyY~ 552 (786)
++||++=+.- +..+..++|+.++++|||++.++.-.+.
T Consensus 168 ~~Pv~vKl~p-~~~~~~~~a~~~~~~Gadgi~~~Nt~~~ 205 (420)
T PRK08318 168 RLPVIVKLTP-NITDIREPARAAKRGGADAVSLINTINS 205 (420)
T ss_pred CCcEEEEcCC-CcccHHHHHHHHHHCCCCEEEEecccCc
Confidence 5799998875 4556889999999999999999876554
No 313
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=44.68 E-value=1.3e+02 Score=35.58 Aligned_cols=113 Identities=13% Similarity=0.100 Sum_probs=72.3
Q ss_pred HHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHhcC-CCCEEEEeCCCCcCCccCHHHHHHHHhCCCEE
Q psy11975 526 TRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNS-PIPVIIYNNTFVTNIDISVDTLVKLAHHENIR 604 (786)
Q Consensus 526 T~EAIELAr~Ae~aGADAVmViPPyY~kps~S~eeLv~YFraIAeAt-dLPIiLYNiP~~TGv~LSpelL~rLAeiPNVV 604 (786)
..+..++++...+.|+|.|.+=.-. . ..+.+.+..+.|-+.. ++|||. |+-.+.+....|.+. .+-
T Consensus 223 ~~~~~~ra~~Lv~aGVd~i~~D~a~--g---~~~~~~~~i~~i~~~~~~~~vi~-------g~~~t~~~~~~l~~~-G~d 289 (475)
T TIGR01303 223 NGDVGGKAKALLDAGVDVLVIDTAH--G---HQVKMISAIKAVRALDLGVPIVA-------GNVVSAEGVRDLLEA-GAN 289 (475)
T ss_pred CccHHHHHHHHHHhCCCEEEEeCCC--C---CcHHHHHHHHHHHHHCCCCeEEE-------eccCCHHHHHHHHHh-CCC
Confidence 4677889999999999998876544 1 2466777777777765 799998 556788999999864 344
Q ss_pred EEE--------eC-----C-----HHHHHHHHhhcCCCCEEEEeCCc----chhhhhhccCCccccccc
Q psy11975 605 GVK--------DT-----D-----NIKLANMANQTKDLNFSVFAGSA----GYLLSGLLVGCAGGINAL 651 (786)
Q Consensus 605 GIK--------DS-----D-----l~ri~~ll~~~~~~df~Vf~G~D----elLL~aL~~GAdG~Isg~ 651 (786)
+|| .+ + +.-+.++.+....-++.|+.-.. +.+.-+|.+||+.+|.|.
T Consensus 290 ~i~vg~g~Gs~~ttr~~~~~g~~~~~a~~~~~~~~~~~~~~viadGgi~~~~di~kala~GA~~vm~g~ 358 (475)
T TIGR01303 290 IIKVGVGPGAMCTTRMMTGVGRPQFSAVLECAAEARKLGGHVWADGGVRHPRDVALALAAGASNVMVGS 358 (475)
T ss_pred EEEECCcCCccccCccccCCCCchHHHHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHcCCCEEeech
Confidence 555 22 1 12222232211112445443221 246778999999888875
No 314
>PRK10799 metal-binding protein; Provisional
Probab=44.61 E-value=1.1e+02 Score=32.74 Aligned_cols=54 Identities=13% Similarity=0.174 Sum_probs=34.5
Q ss_pred HHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHH-h--cCCCCEEEEeCCCC
Q psy11975 529 TIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVA-D--NSPIPVIIYNNTFV 584 (786)
Q Consensus 529 AIELAr~Ae~aGADAVmViPPyY~kps~S~eeLv~YFraIA-e--AtdLPIiLYNiP~~ 584 (786)
+.+..+.|.+.|||.++.-=|.+|++. ..-...+..++. . .-++-++.+|.|--
T Consensus 45 t~~vi~~A~~~~~dlIitHHP~~~~~~--~~~~~~~~~~~~~~li~~~i~vy~~Htn~D 101 (247)
T PRK10799 45 SQALLDEAVRLQADAVIVHHGYFWKGE--SPVIRGMKRNRLKTLLANDINLYGWHLPLD 101 (247)
T ss_pred CHHHHHHHHHCCCCEEEECCchhccCC--CccccchHHHHHHHHHHCCCeEEEEecchh
Confidence 344456778889999999999998764 111111222222 2 23799999998754
No 315
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=44.39 E-value=3.6e+02 Score=27.37 Aligned_cols=112 Identities=13% Similarity=0.074 Sum_probs=63.1
Q ss_pred EEEeCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHhcCCCCEEEEeCCCCcCCccCHHHHHH
Q psy11975 517 LLKPQKHTTTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVK 596 (786)
Q Consensus 517 VIaGVGa~ST~EAIELAr~Ae~aGADAVmViPPyY~kps~S~eeLv~YFraIAeAtdLPIiLYNiP~~TGv~LSpelL~r 596 (786)
+.+|+|..-+.+ .++.|.++|||++++ |. ++.++.++.+. .+++++ | |+. +++.+.+
T Consensus 56 ~~iGag~v~~~~---~~~~a~~~Ga~~i~~--p~------~~~~~~~~~~~----~~~~~i----~---gv~-t~~e~~~ 112 (190)
T cd00452 56 ALIGAGTVLTPE---QADAAIAAGAQFIVS--PG------LDPEVVKAANR----AGIPLL----P---GVA-TPTEIMQ 112 (190)
T ss_pred CEEEEEeCCCHH---HHHHHHHcCCCEEEc--CC------CCHHHHHHHHH----cCCcEE----C---CcC-CHHHHHH
Confidence 666766655454 456677799999963 21 24455555443 356664 3 333 6677666
Q ss_pred HHhC-CCEEEEEeC----CHHHHHHHHhhcCCCCEEEEeCCcc-hhhhhhccCCcccccccc
Q psy11975 597 LAHH-ENIRGVKDT----DNIKLANMANQTKDLNFSVFAGSAG-YLLSGLLVGCAGGINALS 652 (786)
Q Consensus 597 LAei-PNVVGIKDS----Dl~ri~~ll~~~~~~df~Vf~G~De-lLL~aL~~GAdG~Isg~a 652 (786)
..+. ..++++ +. ....+..+......-.+-...|-+. .+...+..|++|+..+..
T Consensus 113 A~~~Gad~i~~-~p~~~~g~~~~~~l~~~~~~~p~~a~GGI~~~n~~~~~~~G~~~v~v~s~ 173 (190)
T cd00452 113 ALELGADIVKL-FPAEAVGPAYIKALKGPFPQVRFMPTGGVSLDNAAEWLAAGVVAVGGGSL 173 (190)
T ss_pred HHHCCCCEEEE-cCCcccCHHHHHHHHhhCCCCeEEEeCCCCHHHHHHHHHCCCEEEEEchh
Confidence 6543 455555 32 3454544433111223444556653 466778899888776654
No 316
>PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase
Probab=44.25 E-value=1.8e+02 Score=33.32 Aligned_cols=29 Identities=17% Similarity=0.109 Sum_probs=23.9
Q ss_pred CCeEEE-eCCCCCHHHHHHHHHHHHHcCCCEEEEcC
Q psy11975 514 QADLLK-PQKHTTTRATIDLTQKAAKAGANAALILC 548 (786)
Q Consensus 514 RVPVIa-GVGa~ST~EAIELAr~Ae~aGADAVmViP 548 (786)
++|||+ ||.+ .+-|+.|.++|+|+|.|..
T Consensus 224 ~~PiivKgV~~------~~dA~~a~~~Gvd~I~Vsn 253 (367)
T PLN02493 224 KLPILVKGVLT------GEDARIAIQAGAAGIIVSN 253 (367)
T ss_pred CCCEEeecCCC------HHHHHHHHHcCCCEEEECC
Confidence 578988 8853 6777889999999999986
No 317
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=44.15 E-value=3.6e+02 Score=27.87 Aligned_cols=124 Identities=12% Similarity=0.137 Sum_probs=64.2
Q ss_pred CeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHhcCC-CCEEE-EeC--------CCC
Q psy11975 515 ADLLKPQKHTTTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSP-IPVII-YNN--------TFV 584 (786)
Q Consensus 515 VPVIaGVGa~ST~EAIELAr~Ae~aGADAVmViPPyY~kps~S~eeLv~YFraIAeAtd-LPIiL-YNi--------P~~ 584 (786)
+||.+|-|=.+.+++ +.+.++|||+|++..-.. . +. +.+.+++++.+ -.+++ -++ -..
T Consensus 73 ~pi~~ggGI~~~ed~----~~~~~~Ga~~vvlgs~~l-~---d~----~~~~~~~~~~g~~~i~~sid~~~~~v~~~g~~ 140 (230)
T TIGR00007 73 VPVQVGGGIRSLEDV----EKLLDLGVDRVIIGTAAV-E---NP----DLVKELLKEYGPERIVVSLDARGGEVAVKGWL 140 (230)
T ss_pred CCEEEeCCcCCHHHH----HHHHHcCCCEEEEChHHh-h---CH----HHHHHHHHHhCCCcEEEEEEEECCEEEEcCCc
Confidence 588887776665554 445558999998764222 1 13 33455555543 22221 110 001
Q ss_pred cCCccCHH-HHHHHHhC--CCEEEE---Ee----C-CHHHHHHHHhhcCCCCEEEEeCCc--c--hhhhhhccCCccccc
Q psy11975 585 TNIDISVD-TLVKLAHH--ENIRGV---KD----T-DNIKLANMANQTKDLNFSVFAGSA--G--YLLSGLLVGCAGGIN 649 (786)
Q Consensus 585 TGv~LSpe-lL~rLAei--PNVVGI---KD----S-Dl~ri~~ll~~~~~~df~Vf~G~D--e--lLL~aL~~GAdG~Is 649 (786)
....+++. ++.++.+. ..|+-. .+ . |+..+.++.+. .++.++.+.+ . .+...+..|++|++.
T Consensus 141 ~~~~~~~~~~~~~~~~~g~~~ii~~~~~~~g~~~g~~~~~i~~i~~~---~~ipvia~GGi~~~~di~~~~~~Gadgv~i 217 (230)
T TIGR00007 141 EKSEVSLEELAKRLEELGLEGIIYTDISRDGTLSGPNFELTKELVKA---VNVPVIASGGVSSIDDLIALKKLGVYGVIV 217 (230)
T ss_pred ccCCCCHHHHHHHHHhCCCCEEEEEeecCCCCcCCCCHHHHHHHHHh---CCCCEEEeCCCCCHHHHHHHHHCCCCEEEE
Confidence 11124544 44445543 444433 11 1 67777777652 2344443332 2 244556789999998
Q ss_pred cccc
Q psy11975 650 ALSA 653 (786)
Q Consensus 650 g~aN 653 (786)
|.+-
T Consensus 218 g~a~ 221 (230)
T TIGR00007 218 GKAL 221 (230)
T ss_pred eHHH
Confidence 8763
No 318
>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]
Probab=44.00 E-value=55 Score=35.50 Aligned_cols=66 Identities=15% Similarity=0.247 Sum_probs=51.4
Q ss_pred cccCCCCeEEEeCCCCCHHHH---HHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHhcCCCCEEE
Q psy11975 509 SEREWQADLLKPQKHTTTRAT---IDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVII 578 (786)
Q Consensus 509 eevaGRVPVIaGVGa~ST~EA---IELAr~Ae~aGADAVmViPPyY~kps~S~eeLv~YFraIAeAtdLPIiL 578 (786)
+..+| .|+=||.-.+.+++ +++|+.+.+.|||-++.+.=.-..-. .+-+++..+++|+.+.+|+.+
T Consensus 11 DVk~G--rVVKGv~F~~lrd~GDpVelA~~Y~e~GADElvFlDItAs~~g--r~~~~~vv~r~A~~vfiPltV 79 (256)
T COG0107 11 DVKDG--RVVKGVNFKNLRDAGDPVELAKRYNEEGADELVFLDITASSEG--RETMLDVVERVAEQVFIPLTV 79 (256)
T ss_pred EccCC--EEEecccccchhhcCChHHHHHHHHHcCCCeEEEEeccccccc--chhHHHHHHHHHhhceeeeEe
Confidence 34455 56678887777765 99999999999999998764433333 677899999999999999876
No 319
>PF01784 NIF3: NIF3 (NGG1p interacting factor 3); InterPro: IPR002678 This family contains several NIF3 (NGG1p interacting factor 3) protein homologues. NIF3 interacts with the yeast transcriptional coactivator NGG1p which is part of the ADA complex, the exact function of this interaction is unknown [][].; PDB: 1NMO_F 1NMP_B 2GX8_C 2FYW_B 2NYD_A 3LNL_A 2YYB_A 3RXY_F.
Probab=43.88 E-value=44 Score=35.38 Aligned_cols=53 Identities=15% Similarity=0.265 Sum_probs=31.4
Q ss_pred HHHHHHHHHcCCCEEEEcCCCCCCCC--C-CHHHHHHHHHHHHhcCCCCEEEEeCCC
Q psy11975 530 IDLTQKAAKAGANAALILCPYYFQKK--M-TEDLIYEHFISVADNSPIPVIIYNNTF 583 (786)
Q Consensus 530 IELAr~Ae~aGADAVmViPPyY~kps--~-S~eeLv~YFraIAeAtdLPIiLYNiP~ 583 (786)
.+.++.|.+.|||.|+.-=|.+|++- + ...-..+..+.+.+ -++.||-+|-|-
T Consensus 43 ~~vi~~A~~~~~dlIItHHP~~f~~~~~~~~~~~~~~~~~~li~-~~I~vy~~Ht~l 98 (241)
T PF01784_consen 43 PEVIEEAIEKGADLIITHHPLFFKPLKSLTGDDYKGKIIEKLIK-NGISVYSAHTNL 98 (241)
T ss_dssp HHHHHHHHHTT-SEEEESS-SSSSTSSHCHCHSHHHHHHHHHHH-TT-EEEEESHHH
T ss_pred HHHHHHHHHcCCCEEEEcCchhhcCCccccccchhhHHHHHHHH-CCCEEEEecccc
Confidence 34455666799999999999998753 1 11123334444443 589999998764
No 320
>PF04909 Amidohydro_2: Amidohydrolase; InterPro: IPR006992 These proteins are related to the metal-dependent hydrolase superfamily []. The family includes 2-amino-3-carboxymuconate-6-semialdehyde decarboxylase which converts alpha-amino-beta-carboxymuconate-epsilon- semialdehyde (ACMS) to alpha-aminomuconate semialdehyde (AMS). ACMS can be converted non-enzymatically to quinolate, a potent endogenous excitoxin of neuronal cells which is implicated in the pathogenesis of various neurodegenerative disorders. In the presence of AMCSD, ACMS is converted to AMS, a benign catabolite. 2-amino-3-(3-oxoprop-2-enyl)-but-2-enedioate = 2-aminomuconate semialdehyde + CO2. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2QPX_A 4D8L_A 3K4W_I 3IRS_B 4DZI_B 3S4T_G 2GWG_B 3IJ6_A 2DVX_C 2DVT_C ....
Probab=43.58 E-value=11 Score=38.69 Aligned_cols=95 Identities=11% Similarity=0.034 Sum_probs=60.2
Q ss_pred CCCeEEEeCCCCCHHHHHHHHHHHH-HcCCCEEEEcCCCCCCCCCCHHHHH-HHHHHHHhcCCCCEEEEeC----CCCcC
Q psy11975 513 WQADLLKPQKHTTTRATIDLTQKAA-KAGANAALILCPYYFQKKMTEDLIY-EHFISVADNSPIPVIIYNN----TFVTN 586 (786)
Q Consensus 513 GRVPVIaGVGa~ST~EAIELAr~Ae-~aGADAVmViPPyY~kps~S~eeLv-~YFraIAeAtdLPIiLYNi----P~~TG 586 (786)
+++-..+.+.-...+++++..+.+. +.|+.+|.+.+....... .+..+. ..|+. |++.++||+++=- +....
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~Gv~l~~~~~~~~~-~~~~~~~~~~~~-~~~~~~pv~~H~g~~~~~~~~~ 147 (273)
T PF04909_consen 70 DRFIGFAAIPPPDPEDAVEELERALQELGFRGVKLHPDLGGFDP-DDPRLDDPIFEA-AEELGLPVLIHTGMTGFPDAPS 147 (273)
T ss_dssp TTEEEEEEETTTSHHHHHHHHHHHHHTTTESEEEEESSETTCCT-TSGHCHHHHHHH-HHHHT-EEEEEESHTHHHHHHH
T ss_pred CCEEEEEEecCCCchhHHHHHHHhccccceeeeEecCCCCcccc-ccHHHHHHHHHH-HHhhccceeeeccccchhhhhH
Confidence 4555666666767888888888877 899999998886653332 244444 55554 4456899998810 11112
Q ss_pred CccCHHHHHHHH-hCCCEEEEEeC
Q psy11975 587 IDISVDTLVKLA-HHENIRGVKDT 609 (786)
Q Consensus 587 v~LSpelL~rLA-eiPNVVGIKDS 609 (786)
....+..+.+++ ++|++.-|=.-
T Consensus 148 ~~~~~~~~~~~~~~~P~l~ii~~H 171 (273)
T PF04909_consen 148 DPADPEELEELLERFPDLRIILAH 171 (273)
T ss_dssp HHHHHHHHTTHHHHSTTSEEEESG
T ss_pred HHHHHHHHHHHHHHhcCCeEEEec
Confidence 334566677777 68986655554
No 321
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=43.56 E-value=66 Score=35.66 Aligned_cols=37 Identities=11% Similarity=0.230 Sum_probs=29.7
Q ss_pred CCeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCC
Q psy11975 514 QADLLKPQKHTTTRATIDLTQKAAKAGANAALILCPYY 551 (786)
Q Consensus 514 RVPVIaGVGa~ST~EAIELAr~Ae~aGADAVmViPPyY 551 (786)
++||++=.+. ...+..+.++.++++|||+|.+..-.+
T Consensus 165 ~iPV~vKl~p-~~~~~~~~a~~l~~~G~dgI~~~n~~~ 201 (334)
T PRK07565 165 SIPVAVKLSP-YFSNLANMAKRLDAAGADGLVLFNRFY 201 (334)
T ss_pred CCcEEEEeCC-CchhHHHHHHHHHHcCCCeEEEECCcC
Confidence 4799997655 345788999999999999999986543
No 322
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=43.46 E-value=5.3e+02 Score=29.14 Aligned_cols=119 Identities=13% Similarity=0.083 Sum_probs=74.2
Q ss_pred EEeCCCCCHHHHHHHHHHHHHcCC--CEEEEcCCCCCCCCCCHHHHHHHHHHHHhcCC-CCEEEEeCCCCcCCccCHHHH
Q psy11975 518 LKPQKHTTTRATIDLTQKAAKAGA--NAALILCPYYFQKKMTEDLIYEHFISVADNSP-IPVIIYNNTFVTNIDISVDTL 594 (786)
Q Consensus 518 IaGVGa~ST~EAIELAr~Ae~aGA--DAVmViPPyY~kps~S~eeLv~YFraIAeAtd-LPIiLYNiP~~TGv~LSpelL 594 (786)
+++++-....+..+.+....++|+ |++.+=.-. + ..+.+.+..+.|-+..+ +||+.=|+- +.+..
T Consensus 87 ~v~~~vg~~~~~~~~~~~Lv~ag~~~d~i~iD~a~---g--h~~~~~e~I~~ir~~~p~~~vi~g~V~-------t~e~a 154 (326)
T PRK05458 87 IASISVGVKDDEYDFVDQLAAEGLTPEYITIDIAH---G--HSDSVINMIQHIKKHLPETFVIAGNVG-------TPEAV 154 (326)
T ss_pred EEEEEecCCHHHHHHHHHHHhcCCCCCEEEEECCC---C--chHHHHHHHHHHHhhCCCCeEEEEecC-------CHHHH
Confidence 565555555677888888888855 988885443 2 24566777777777775 888887742 67888
Q ss_pred HHHHhCCCEEEEEeC------------------C--HHHHHHHHhhcCCCCEEE-EeCCc---chhhhhhccCCcccccc
Q psy11975 595 VKLAHHENIRGVKDT------------------D--NIKLANMANQTKDLNFSV-FAGSA---GYLLSGLLVGCAGGINA 650 (786)
Q Consensus 595 ~rLAeiPNVVGIKDS------------------D--l~ri~~ll~~~~~~df~V-f~G~D---elLL~aL~~GAdG~Isg 650 (786)
..|.+. .+-++|-. | +..+.++.+. . ++.| -.|.= .....+|.+|+++++.|
T Consensus 155 ~~l~~a-Gad~i~vg~~~G~~~~t~~~~g~~~~~w~l~ai~~~~~~-~--~ipVIAdGGI~~~~Di~KaLa~GA~aV~vG 230 (326)
T PRK05458 155 RELENA-GADATKVGIGPGKVCITKIKTGFGTGGWQLAALRWCAKA-A--RKPIIADGGIRTHGDIAKSIRFGATMVMIG 230 (326)
T ss_pred HHHHHc-CcCEEEECCCCCcccccccccCCCCCccHHHHHHHHHHH-c--CCCEEEeCCCCCHHHHHHHHHhCCCEEEec
Confidence 888753 23334311 1 2234555442 2 2333 33331 23567889999999888
Q ss_pred cc
Q psy11975 651 LS 652 (786)
Q Consensus 651 ~a 652 (786)
..
T Consensus 231 ~~ 232 (326)
T PRK05458 231 SL 232 (326)
T ss_pred hh
Confidence 54
No 323
>PF01070 FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR000262 A number of oxidoreductases that act on alpha-hydroxy acids and which are FMN-containing flavoproteins have been shown [, , ] to be structurally related. These enzymes are: Lactate dehydrogenase (1.1.2.3 from EC), which consists of a dehydrogenase domain and a haem-binding domain called cytochrome b2 and which catalyses the conversion of lactate into pyruvate. Glycolate oxidase (1.1.3.15 from EC) ((S)-2-hydroxy-acid oxidase), a peroxisomal enzyme that catalyses the conversion of glycolate and oxygen to glyoxylate and hydrogen peroxide. Long chain alpha-hydroxy acid oxidase from rat (1.1.3.15 from EC), a peroxisomal enzyme. Lactate 2-monooxygenase (1.13.12.4 from EC) (lactate oxidase) from Mycobacterium smegmatis, which catalyses the conversion of lactate and oxygen to acetate, carbon dioxide and water. (S)-mandelate dehydrogenase from Pseudomonas putida (gene mdlB), which catalyses the reduction of (S)-mandelate to benzoylformate. The first step in the reaction mechanism of these enzymes is the abstraction of the proton from the alpha-carbon of the substrate producing a carbanion which can subsequently attach to the N5 atom of FMN. A conserved histidine has been shown [] to be involved in the removal of the proton. The region around this active site residue is highly conserved and contains an arginine residue which is involved in substrate binding.; GO: 0016491 oxidoreductase activity; PDB: 1VCG_C 1VCF_A 1P0N_B 1P0K_A 2A85_A 2A7P_A 3GIY_A 2A7N_A 3DH7_A 2RDU_A ....
Probab=43.34 E-value=2.6e+02 Score=31.70 Aligned_cols=119 Identities=18% Similarity=0.267 Sum_probs=73.3
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEcC------------------CCCC----------CC------------------C--
Q psy11975 524 TTTRATIDLTQKAAKAGANAALILC------------------PYYF----------QK------------------K-- 555 (786)
Q Consensus 524 ~ST~EAIELAr~Ae~aGADAVmViP------------------PyY~----------kp------------------s-- 555 (786)
.+.+.+.++.+.|+++|++|+++.- |.-. .| .
T Consensus 120 ~d~~~~~~~i~rAe~aG~~Al~vtvD~~~~~~R~~d~r~g~~~p~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 199 (356)
T PF01070_consen 120 RDRELTRDLIRRAEAAGAKALVVTVDAPQEGNRERDLRNGFSVPPKLSPRNLLDGASHPRSGMPRLENNEAPPPGDNGAA 199 (356)
T ss_dssp SSHHHHHHHHHHHHHTTCSEEEEETSHSSHHHBHHHHHHTCCCSTTHCTTCGTTTTTTT-TTTGG-----CSSSSTSTCH
T ss_pred cCHHHHHHHHHHhhcCCCCEEEEECcCcccCCcccccccccCCCcccccccccccccCcccccccccccccccCCCcchh
Confidence 4778889999999999999999865 1110 00 0
Q ss_pred --------CCHHHHHHHHHHHHhcCCCCEEEEeCCCCcCCccCHHHHHHHHhCCCEEEEEeC-------C-----HHHHH
Q psy11975 556 --------MTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKDT-------D-----NIKLA 615 (786)
Q Consensus 556 --------~S~eeLv~YFraIAeAtdLPIiLYNiP~~TGv~LSpelL~rLAeiPNVVGIKDS-------D-----l~ri~ 615 (786)
.+.+--.+..+.|.+.+++||++=-+ ++++...++.++ .+-||=-+ | +.-+.
T Consensus 200 ~~~~~~~~~~~~~~w~~i~~~~~~~~~pvivKgv-------~~~~da~~~~~~-G~~~i~vs~hGGr~~d~~~~~~~~L~ 271 (356)
T PF01070_consen 200 AARFVGSQFDPSLTWDDIEWIRKQWKLPVIVKGV-------LSPEDAKRAVDA-GVDGIDVSNHGGRQLDWGPPTIDALP 271 (356)
T ss_dssp HHHHHHCHB-TT-SHHHHHHHHHHCSSEEEEEEE--------SHHHHHHHHHT-T-SEEEEESGTGTSSTTS-BHHHHHH
T ss_pred HHHHHHHhcCCCCCHHHHHHHhcccCCceEEEec-------ccHHHHHHHHhc-CCCEEEecCCCcccCccccccccccH
Confidence 00111234577788888999998765 889999888875 34444444 1 24444
Q ss_pred HHHhhcCCCCEEEEe-CCc--c-hhhhhhccCCccccccc
Q psy11975 616 NMANQTKDLNFSVFA-GSA--G-YLLSGLLVGCAGGINAL 651 (786)
Q Consensus 616 ~ll~~~~~~df~Vf~-G~D--e-lLL~aL~~GAdG~Isg~ 651 (786)
++.. ..++++.|+. |.= + -.+-++.+|++.+..+-
T Consensus 272 ~i~~-~~~~~~~i~~dgGir~g~Dv~kalaLGA~~v~igr 310 (356)
T PF01070_consen 272 EIRA-AVGDDIPIIADGGIRRGLDVAKALALGADAVGIGR 310 (356)
T ss_dssp HHHH-HHTTSSEEEEESS--SHHHHHHHHHTT-SEEEESH
T ss_pred HHHh-hhcCCeeEEEeCCCCCHHHHHHHHHcCCCeEEEcc
Confidence 4444 2355666544 331 2 26778999999877663
No 324
>TIGR01362 KDO8P_synth 3-deoxy-8-phosphooctulonate synthase. In Gram-negative bacteria, this is the first step in the biosynthesis of 3-deoxy-D-manno-octulosonate, part of the oligosaccharide core of lipopolysaccharide.
Probab=43.29 E-value=4.1e+02 Score=29.29 Aligned_cols=98 Identities=12% Similarity=0.062 Sum_probs=66.8
Q ss_pred CeEEEeCCC-CCHHHHHHHHHHHHHcCCC----EEEE--------cCCCCCCCCCCHHHHHHHHHHHHhcCCCCEEE---
Q psy11975 515 ADLLKPQKH-TTTRATIDLTQKAAKAGAN----AALI--------LCPYYFQKKMTEDLIYEHFISVADNSPIPVII--- 578 (786)
Q Consensus 515 VPVIaGVGa-~ST~EAIELAr~Ae~aGAD----AVmV--------iPPyY~kps~S~eeLv~YFraIAeAtdLPIiL--- 578 (786)
+-||+|-.. .+-+.+++.|+..+++|+. .+.= +.||.|.-- -.++=+++++++.+.+++||+-
T Consensus 3 ~~viAGPCsvEs~e~~~~~A~~lk~~~~~~~~~~~fk~sf~KapRTsp~sFqG~-G~eeGL~iL~~vk~~~glpvvTeV~ 81 (258)
T TIGR01362 3 FFLIAGPCVIESEDHALRVAEKLKELTSKLGVPFIFKSSFDKANRSSIHSFRGP-GLEEGLKILQKVKEEFGVPILTDVH 81 (258)
T ss_pred ceEEecCCcccCHHHHHHHHHHHHHHHHhcCCCeEEecccCCCCCCCCCCCCCC-CHHHHHHHHHHHHHHhCCceEEEeC
Confidence 457776544 6667788888888886443 3333 346555432 2567789999999999999863
Q ss_pred --------------EeCCCCcCCccCHHHHHHHHhCCCEEEEEeC---CHHHHH
Q psy11975 579 --------------YNNTFVTNIDISVDTLVKLAHHENIRGVKDT---DNIKLA 615 (786)
Q Consensus 579 --------------YNiP~~TGv~LSpelL~rLAeiPNVVGIKDS---Dl~ri~ 615 (786)
..+|.+.-.+ .++|.++++....|-+|-. .++.+.
T Consensus 82 ~~~~~~~vae~vDilQIgArn~rn--~~LL~a~g~t~kpV~lKrG~~~t~~e~l 133 (258)
T TIGR01362 82 ESSQCEPVAEVVDIIQIPAFLCRQ--TDLLVAAAKTGRIVNVKKGQFLSPWDMK 133 (258)
T ss_pred CHHHHHHHHhhCcEEEeCchhcch--HHHHHHHhccCCeEEecCCCcCCHHHHH
Confidence 4456543333 4788888888999999988 454443
No 325
>TIGR01178 ade adenine deaminase. The family described by this model includes an experimentally characterized adenine deaminase of Bacillus subtilis. It also include a member from Methanobacterium thermoautotrophicum, in which adenine deaminase activity has been detected.
Probab=43.21 E-value=76 Score=37.95 Aligned_cols=76 Identities=7% Similarity=0.147 Sum_probs=51.9
Q ss_pred HHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHhcCCCCEEEEeCC--------CCcCCccCHHHHHHHHhCCC
Q psy11975 531 DLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNT--------FVTNIDISVDTLVKLAHHEN 602 (786)
Q Consensus 531 ELAr~Ae~aGADAVmViPPyY~kps~S~eeLv~YFraIAeAtdLPIiLYNiP--------~~TGv~LSpelL~rLAeiPN 602 (786)
++++.+...|...++..|-- ... ....+.++++.+.++.+.+.+ ++-.| ...|..|..+.+.++.+.|+
T Consensus 68 ~~~~~al~~GvTtvv~~P~~-~~~-v~g~~~~~~~~~~a~~~~~d~-~~~~~s~vp~~~~e~~g~~~~~~~i~~~~~~~~ 144 (552)
T TIGR01178 68 EFAKLVLPHGVTTVVSDPHE-IAN-VNGEDGINFMLNNAKKTPLNF-YFMLPSCVPALQFETSGAVLTAEDIDELMELDE 144 (552)
T ss_pred HHHHHHHCCCEEEEEcCCCC-CCC-CCCHHHHHHHHHHhhcCCcEE-EEECCCCCCCCcccCCCCccCHHHHHHHHcCCC
Confidence 46677888899888876533 222 123445566666776666665 34445 23456788999999998899
Q ss_pred EEEEEeC
Q psy11975 603 IRGVKDT 609 (786)
Q Consensus 603 VVGIKDS 609 (786)
|+|+|+-
T Consensus 145 V~glke~ 151 (552)
T TIGR01178 145 VLGLAEV 151 (552)
T ss_pred ccEEEEE
Confidence 9999987
No 326
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=43.08 E-value=1e+02 Score=32.05 Aligned_cols=56 Identities=14% Similarity=0.165 Sum_probs=38.7
Q ss_pred eCCC--CCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHhcCC-CCEEE
Q psy11975 520 PQKH--TTTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSP-IPVII 578 (786)
Q Consensus 520 GVGa--~ST~EAIELAr~Ae~aGADAVmViPPyY~kps~S~eeLv~YFraIAeAtd-LPIiL 578 (786)
.+.. .+.++..++++.+.++|+|.|.+..- ... ++++++.++++.+.+..+ +|+-+
T Consensus 137 ~~~~~~~~~~~l~~~~~~~~~~g~~~i~l~Dt-~G~--~~P~~v~~li~~l~~~~~~~~~~~ 195 (265)
T cd03174 137 DAFGCKTDPEYVLEVAKALEEAGADEISLKDT-VGL--ATPEEVAELVKALREALPDVPLGL 195 (265)
T ss_pred eecCCCCCHHHHHHHHHHHHHcCCCEEEechh-cCC--cCHHHHHHHHHHHHHhCCCCeEEE
Confidence 4455 67788888888888888887775543 222 247888888888877775 66654
No 327
>PRK05313 hypothetical protein; Provisional
Probab=43.02 E-value=6.4e+02 Score=29.93 Aligned_cols=133 Identities=14% Similarity=0.101 Sum_probs=64.8
Q ss_pred HHHHHHHHHcCCCEEE---EcCCCCCCCCCCHHHHHHHHHHHHhcCCCCEEEEeCCCCcCCccCHHHHHHHHhCCCEEEE
Q psy11975 530 IDLTQKAAKAGANAAL---ILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGV 606 (786)
Q Consensus 530 IELAr~Ae~aGADAVm---ViPPyY~kps~S~eeLv~YFraIAeAtdLPIiLYNiP~~TGv~LSpelL~rLAeiPNVVGI 606 (786)
..+=+.|++.|+|.+- .+-..-+... ++.+++-.-++...++.=.--.|+- .+...|.++.+.+++++ |
T Consensus 98 k~Ld~aa~~~gvdfiggfsalv~kG~t~~--d~~lI~siPeaL~~t~~v~ssVnv~-st~~GInmdav~~~~~~-----I 169 (452)
T PRK05313 98 KALDRAAKEVGVDFIGGFSALVQKGMTKG--DRALIESIPEALASTERVCSSVNVG-STKAGINMDAVKLMGEI-----I 169 (452)
T ss_pred HHHHHHHHHCCCceecchHHHHHccCCcC--cHHHHHHHHHHHHhcCceeeEEEec-ccccCCCHHHHHHHHHH-----H
Confidence 3344556778999863 1111112223 6777777766666665433345542 23333456776666532 0
Q ss_pred EeCCHHHHHHHHh---hcCCCCEEEEeCCcchhhhhhccCCcc-----ccccccccccHHHHHHHHHHHcCCHHHHHH
Q psy11975 607 KDTDNIKLANMAN---QTKDLNFSVFAGSAGYLLSGLLVGCAG-----GINALSAVLGGPICELYDLAKAGKWEEAMK 676 (786)
Q Consensus 607 KDSDl~ri~~ll~---~~~~~df~Vf~G~DelLL~aL~~GAdG-----~Isg~aN~~Pel~vaL~eA~~aGD~eeAre 676 (786)
.++.++-. -....+|.||+ +..-.-+.+....+| .+-..+--.|....+.++.+...++++..+
T Consensus 170 -----k~~A~~t~~~~g~g~ak~vVfa-N~~~d~PFmpgA~Hg~ge~d~vinVGvSgPgvv~~al~~~~~~~~~~~ae 241 (452)
T PRK05313 170 -----KETAELTKDRDGIGCAKLVVFA-NAPEDNPFMAGAFHGVGEPDAVINVGVSGPGVVKAALEKVKGADFDELAE 241 (452)
T ss_pred -----HHHHHhCCCcCCccceeEEEEc-cCCCCCCCCCCccccCCCCCcEEEEeecCChHHHHHHHhccCCcHHHHHH
Confidence 11111111 01124677777 332222222222222 222222237999999998887777665433
No 328
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=42.91 E-value=1e+02 Score=35.05 Aligned_cols=91 Identities=13% Similarity=0.104 Sum_probs=61.6
Q ss_pred CCCHHHHHHHHHHHHHcC-CCEEEEcCCCCCCCC-C--C-HHHHHHHHHHHHhcCCCCEEEEeCCCCcCCccCHHHHHHH
Q psy11975 523 HTTTRATIDLTQKAAKAG-ANAALILCPYYFQKK-M--T-EDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKL 597 (786)
Q Consensus 523 a~ST~EAIELAr~Ae~aG-ADAVmViPPyY~kps-~--S-~eeLv~YFraIAeAtdLPIiLYNiP~~TGv~LSpelL~rL 597 (786)
+.+.+|++++++..++.| +|.+-+..+.+.... + . ..-.+.|-+.+...+.+|++.= |.-.+++...++
T Consensus 233 g~~~~e~~~la~~L~~~G~~d~i~vs~~~~~~~~~~~~~~~~~~~~~a~~i~~~~~~pvi~~------G~i~~~~~Ae~~ 306 (363)
T COG1902 233 GLTIEEAVELAKALEEAGLVDYIHVSEGGYERGGTITVSGPGYQVEFAARIKKAVRIPVIAV------GGINDPEQAEEI 306 (363)
T ss_pred CCCHHHHHHHHHHHHhcCCccEEEeecccccCCCCccccccchhHHHHHHHHHhcCCCEEEe------CCCCCHHHHHHH
Confidence 456789999999999999 799999998775321 1 1 1122334444667778999864 445678888888
Q ss_pred HhC--CCEEEEEeC---CHHHHHHHHh
Q psy11975 598 AHH--ENIRGVKDT---DNIKLANMAN 619 (786)
Q Consensus 598 Aei--PNVVGIKDS---Dl~ri~~ll~ 619 (786)
.+. --+||+==. |++-..++.+
T Consensus 307 l~~g~aDlVa~gR~~ladP~~~~k~~~ 333 (363)
T COG1902 307 LASGRADLVAMGRPFLADPDLVLKAAE 333 (363)
T ss_pred HHcCCCCEEEechhhhcCccHHHHHHc
Confidence 865 345555444 7766666654
No 329
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=42.83 E-value=3.9e+02 Score=29.47 Aligned_cols=92 Identities=12% Similarity=0.228 Sum_probs=63.2
Q ss_pred CeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCC----C------------CCCHHHHHHHHHHHHhc-CCCCEE
Q psy11975 515 ADLLKPQKHTTTRATIDLTQKAAKAGANAALILCPYYFQ----K------------KMTEDLIYEHFISVADN-SPIPVI 577 (786)
Q Consensus 515 VPVIaGVGa~ST~EAIELAr~Ae~aGADAVmViPPyY~k----p------------s~S~eeLv~YFraIAeA-tdLPIi 577 (786)
+-.++-.|..+.+.+++.++.+.+.|||++=+--||-.. | +++.+...+..+++-+. .++|++
T Consensus 19 ~i~yit~GdP~~e~s~e~i~~L~~~GaD~iELGvPfSDPvADGP~Iq~A~~rAL~~g~t~~~~lel~~~~r~~~~~~Piv 98 (265)
T COG0159 19 LIPYVTAGDPDLETSLEIIKTLVEAGADILELGVPFSDPVADGPTIQAAHLRALAAGVTLEDTLELVEEIRAKGVKVPIV 98 (265)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHhCCCCEEEecCCCCCcCccCHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCCCCEE
Confidence 445678889999999999999999999999999987532 1 23566777777777744 456665
Q ss_pred --EEeCCCCcCCccCHHHHHHHHhCCCEEEEEeC
Q psy11975 578 --IYNNTFVTNIDISVDTLVKLAHHENIRGVKDT 609 (786)
Q Consensus 578 --LYNiP~~TGv~LSpelL~rLAeiPNVVGIKDS 609 (786)
.|-+|.. ....+.+.+.++--.|-|+---
T Consensus 99 lm~Y~Npi~---~~Gie~F~~~~~~~GvdGlivp 129 (265)
T COG0159 99 LMTYYNPIF---NYGIEKFLRRAKEAGVDGLLVP 129 (265)
T ss_pred EEEeccHHH---HhhHHHHHHHHHHcCCCEEEeC
Confidence 4555642 2334555555544466666655
No 330
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=42.67 E-value=2.9e+02 Score=29.87 Aligned_cols=139 Identities=12% Similarity=0.097 Sum_probs=77.6
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHhcC--CCCEEEEeCCCCcCCccCHH-HHHHHHh
Q psy11975 523 HTTTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNS--PIPVIIYNNTFVTNIDISVD-TLVKLAH 599 (786)
Q Consensus 523 a~ST~EAIELAr~Ae~aGADAVmViPPyY~kps~S~eeLv~YFraIAeAt--dLPIiLYNiP~~TGv~LSpe-lL~rLAe 599 (786)
..++++.+++++...++|+|.|=+..|... +. -+.|++.+.+.. +..+.....+...++....+ .+.++++
T Consensus 16 ~~s~e~k~~i~~~L~~~Gv~~IE~G~~~~~-----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~a~~ 89 (273)
T cd07941 16 SFSVEDKLRIARKLDELGVDYIEGGWPGSN-----PK-DTEFFARAKKLKLKHAKLAAFGSTRRAGVKAEEDPNLQALLE 89 (273)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEecCCcCC-----HH-HHHHHHHHHHcCCCCcEEEEEecccccCCCccchHHHHHHHh
Confidence 468999999999999999999999776532 22 377788887654 56666666443344433222 3444444
Q ss_pred C-CCEEEEEeC----------------CHHHHHHHHhhc--CCCCEEE-----EeCC--c-chhhh----hhccCCcccc
Q psy11975 600 H-ENIRGVKDT----------------DNIKLANMANQT--KDLNFSV-----FAGS--A-GYLLS----GLLVGCAGGI 648 (786)
Q Consensus 600 i-PNVVGIKDS----------------Dl~ri~~ll~~~--~~~df~V-----f~G~--D-elLL~----aL~~GAdG~I 648 (786)
. -..+.|-.+ .+..+.++++.. .+-.+.+ +.|. + ++++. ...+|++.+.
T Consensus 90 ~g~~~i~i~~~~sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~~~~~d~~~~~~~~~~~~~~~~~~~g~~~i~ 169 (273)
T cd07941 90 AGTPVVTIFGKSWDLHVTEALGTTLEENLAMIRDSVAYLKSHGREVIFDAEHFFDGYKANPEYALATLKAAAEAGADWLV 169 (273)
T ss_pred CCCCEEEEEEcCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEEEeEEeccccCCCCHHHHHHHHHHHHhCCCCEEE
Confidence 3 234444322 122333333321 2222222 1221 1 12222 2446887543
Q ss_pred --ccccccccHHHHHHHHHHH
Q psy11975 649 --NALSAVLGGPICELYDLAK 667 (786)
Q Consensus 649 --sg~aN~~Pel~vaL~eA~~ 667 (786)
-..+...|+.+.+++++++
T Consensus 170 l~DT~G~~~P~~v~~lv~~l~ 190 (273)
T cd07941 170 LCDTNGGTLPHEIAEIVKEVR 190 (273)
T ss_pred EecCCCCCCHHHHHHHHHHHH
Confidence 3345568888888887775
No 331
>PRK08508 biotin synthase; Provisional
Probab=42.67 E-value=3e+02 Score=29.87 Aligned_cols=54 Identities=17% Similarity=0.094 Sum_probs=38.2
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHhcC-C-CCEEEE
Q psy11975 523 HTTTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNS-P-IPVIIY 579 (786)
Q Consensus 523 a~ST~EAIELAr~Ae~aGADAVmViPPyY~kps~S~eeLv~YFraIAeAt-d-LPIiLY 579 (786)
..+.++.++..+.|.++|. -+..-..+..+.+.++++++...|.+.- + +|+-++
T Consensus 133 ~~~~~~~l~~i~~a~~~Gi---~v~sg~I~GlGEt~ed~~~~l~~lr~L~~~svpl~~~ 188 (279)
T PRK08508 133 THTWEERFQTCENAKEAGL---GLCSGGIFGLGESWEDRISFLKSLASLSPHSTPINFF 188 (279)
T ss_pred CCCHHHHHHHHHHHHHcCC---eecceeEEecCCCHHHHHHHHHHHHcCCCCEEeeCCc
Confidence 4678999999999999985 3333333344567999999999997643 3 555554
No 332
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=42.56 E-value=62 Score=33.40 Aligned_cols=72 Identities=25% Similarity=0.177 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHH-HHHHHHHHHhcCCCCEEEEeCCCCcCCccCHHHHHHHHhCCCEE
Q psy11975 526 TRATIDLTQKAAKAGANAALILCPYYFQKKMTEDL-IYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHHENIR 604 (786)
Q Consensus 526 T~EAIELAr~Ae~aGADAVmViPPyY~kps~S~ee-Lv~YFraIAeAtdLPIiLYNiP~~TGv~LSpelL~rLAeiPNVV 604 (786)
-.+..++++.++++|++.++++.=.-.. +..+ =.+.++++++.+++|++. .|---+++.+.++.+..++-
T Consensus 145 ~~~~~e~~~~~~~~g~~~ii~~~~~~~g---~~~G~d~~~i~~l~~~~~ipvia------~GGi~~~~di~~~~~~g~~~ 215 (233)
T PRK00748 145 GVTAEDLAKRFEDAGVKAIIYTDISRDG---TLSGPNVEATRELAAAVPIPVIA------SGGVSSLDDIKALKGLGAVE 215 (233)
T ss_pred CCCHHHHHHHHHhcCCCEEEEeeecCcC---CcCCCCHHHHHHHHHhCCCCEEE------eCCCCCHHHHHHHHHcCCcc
Confidence 3456788888999999988887421100 0111 157777888888888765 23345788888888766555
Q ss_pred EE
Q psy11975 605 GV 606 (786)
Q Consensus 605 GI 606 (786)
|+
T Consensus 216 gv 217 (233)
T PRK00748 216 GV 217 (233)
T ss_pred EE
Confidence 54
No 333
>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]
Probab=42.50 E-value=81 Score=33.35 Aligned_cols=78 Identities=14% Similarity=0.151 Sum_probs=50.7
Q ss_pred EEEeCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCC--CCCCCHHHHHHHHHHHHhcCCCCEEEEeCCCCcCCccCHHHH
Q psy11975 517 LLKPQKHTTTRATIDLTQKAAKAGANAALILCPYYF--QKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTL 594 (786)
Q Consensus 517 VIaGVGa~ST~EAIELAr~Ae~aGADAVmViPPyY~--kps~S~eeLv~YFraIAeAtdLPIiLYNiP~~TGv~LSpelL 594 (786)
.|+|++..+. +.+..|++.|+|.|.+-|=|.. |+. -...-+++++.+.+...+|++.- -| ++++.+
T Consensus 105 ~iIG~S~h~~----eea~~A~~~g~DYv~~GpifpT~tK~~-~~~~G~~~l~~~~~~~~iP~vAI-----GG--i~~~nv 172 (211)
T COG0352 105 LIIGLSTHDL----EEALEAEELGADYVGLGPIFPTSTKPD-APPLGLEGLREIRELVNIPVVAI-----GG--INLENV 172 (211)
T ss_pred CEEEeecCCH----HHHHHHHhcCCCEEEECCcCCCCCCCC-CCccCHHHHHHHHHhCCCCEEEE-----cC--CCHHHH
Confidence 6888888754 5567788899999998863321 222 13334677777777777886543 23 668888
Q ss_pred HHHHhC--CCEEEE
Q psy11975 595 VKLAHH--ENIRGV 606 (786)
Q Consensus 595 ~rLAei--PNVVGI 606 (786)
.++.+. ..|..+
T Consensus 173 ~~v~~~Ga~gVAvv 186 (211)
T COG0352 173 PEVLEAGADGVAVV 186 (211)
T ss_pred HHHHHhCCCeEEeh
Confidence 888753 344443
No 334
>PRK11197 lldD L-lactate dehydrogenase; Provisional
Probab=42.49 E-value=1.4e+02 Score=34.41 Aligned_cols=29 Identities=10% Similarity=0.140 Sum_probs=21.7
Q ss_pred CCeEEE-eCCCCCHHHHHHHHHHHHHcCCCEEEEcC
Q psy11975 514 QADLLK-PQKHTTTRATIDLTQKAAKAGANAALILC 548 (786)
Q Consensus 514 RVPVIa-GVGa~ST~EAIELAr~Ae~aGADAVmViP 548 (786)
++|||+ || -..+-|+.|.++|||+|.|..
T Consensus 245 ~~pvivKgV------~s~~dA~~a~~~Gvd~I~Vs~ 274 (381)
T PRK11197 245 DGPMVIKGI------LDPEDARDAVRFGADGIVVSN 274 (381)
T ss_pred CCCEEEEec------CCHHHHHHHHhCCCCEEEECC
Confidence 457777 77 234566778889999999885
No 335
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=42.39 E-value=37 Score=35.53 Aligned_cols=86 Identities=13% Similarity=0.145 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHhcCCCCEEEEeCCCCcCCccCHHHHHHHHhCC--C-
Q psy11975 526 TRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHHE--N- 602 (786)
Q Consensus 526 T~EAIELAr~Ae~aGADAVmViPPyY~kps~S~eeLv~YFraIAeAtdLPIiLYNiP~~TGv~LSpelL~rLAeiP--N- 602 (786)
..+.+++++.+++.|+|.+.++.--..... ...-.+..++|++.+++||++ .|---+.+.+.++.+.. .
T Consensus 26 ~~d~~~~a~~~~~~G~~~i~i~d~~~~~~~--~~~~~~~i~~i~~~~~~pv~~------~GGI~s~~d~~~~l~~G~~~v 97 (243)
T cd04731 26 AGDPVELAKRYNEQGADELVFLDITASSEG--RETMLDVVERVAEEVFIPLTV------GGGIRSLEDARRLLRAGADKV 97 (243)
T ss_pred CCCHHHHHHHHHHCCCCEEEEEcCCccccc--CcccHHHHHHHHHhCCCCEEE------eCCCCCHHHHHHHHHcCCceE
Confidence 348899999999999999998875432111 223467888899888999874 23334788888887532 2
Q ss_pred EEEEEeC-CHHHHHHHHh
Q psy11975 603 IRGVKDT-DNIKLANMAN 619 (786)
Q Consensus 603 VVGIKDS-Dl~ri~~ll~ 619 (786)
++|--.- ++..+.++.+
T Consensus 98 ~ig~~~~~~p~~~~~i~~ 115 (243)
T cd04731 98 SINSAAVENPELIREIAK 115 (243)
T ss_pred EECchhhhChHHHHHHHH
Confidence 2221111 6666776665
No 336
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=42.39 E-value=2.9e+02 Score=31.69 Aligned_cols=109 Identities=18% Similarity=0.131 Sum_probs=59.0
Q ss_pred HHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHhcCCCCEEE--EeCCCCcCCccCHHHHHHHHhC-CCEEEEEe
Q psy11975 532 LTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVII--YNNTFVTNIDISVDTLVKLAHH-ENIRGVKD 608 (786)
Q Consensus 532 LAr~Ae~aGADAVmViPPyY~kps~S~eeLv~YFraIAeAtdLPIiL--YNiP~~TGv~LSpelL~rLAei-PNVVGIKD 608 (786)
.++.|.++|||++.+... .. +..+.+ +...+...++++++ .+.+. +.+.+.++.+. ...+++-.
T Consensus 73 ~v~~a~~aGAdgV~v~g~----~~--~~~~~~-~i~~a~~~G~~~~~g~~s~~t------~~e~~~~a~~~GaD~I~~~p 139 (430)
T PRK07028 73 EVEMAAKAGADIVCILGL----AD--DSTIED-AVRAARKYGVRLMADLINVPD------PVKRAVELEELGVDYINVHV 139 (430)
T ss_pred HHHHHHHcCCCEEEEecC----CC--hHHHHH-HHHHHHHcCCEEEEEecCCCC------HHHHHHHHHhcCCCEEEEEe
Confidence 778899999999987632 11 222222 33334446777765 33221 23444444433 23333222
Q ss_pred C---------CHHHHHHHHhhcCCCCEEEEeCCcc-hhhhhhccCCcccccccccc
Q psy11975 609 T---------DNIKLANMANQTKDLNFSVFAGSAG-YLLSGLLVGCAGGINALSAV 654 (786)
Q Consensus 609 S---------Dl~ri~~ll~~~~~~df~Vf~G~De-lLL~aL~~GAdG~Isg~aN~ 654 (786)
. .+..+.++.. ..+-.+.+..|-.. .+...+..|++|++.+.+-+
T Consensus 140 g~~~~~~~~~~~~~l~~l~~-~~~iPI~a~GGI~~~n~~~~l~aGAdgv~vGsaI~ 194 (430)
T PRK07028 140 GIDQQMLGKDPLELLKEVSE-EVSIPIAVAGGLDAETAAKAVAAGADIVIVGGNII 194 (430)
T ss_pred ccchhhcCCChHHHHHHHHh-hCCCcEEEECCCCHHHHHHHHHcCCCEEEEChHHc
Confidence 1 2355555544 22234555556653 46678899999998887644
No 337
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=42.16 E-value=4.5e+02 Score=28.72 Aligned_cols=153 Identities=14% Similarity=0.073 Sum_probs=0.0
Q ss_pred HHHHHHcCCCEEEEcCCCC-----CCCCCCHHHHHHHHHHHHhcC---CCCEEEEeC----CCCcCCccCHHHHHHHHhC
Q psy11975 533 TQKAAKAGANAALILCPYY-----FQKKMTEDLIYEHFISVADNS---PIPVIIYNN----TFVTNIDISVDTLVKLAHH 600 (786)
Q Consensus 533 Ar~Ae~aGADAVmViPPyY-----~kps~S~eeLv~YFraIAeAt---dLPIiLYNi----P~~TGv~LSpelL~rLAei 600 (786)
++.|.++|++.|-+..|.- .+...+.++.++-+.++.+.+ ++.+.+|=. |.++..+.=.+.+.++.+.
T Consensus 80 ~~~A~~~g~~~i~i~~~~S~~h~~~~~~~t~~e~l~~~~~~i~~a~~~G~~v~~~~~d~~~~~r~~~~~~~~~~~~~~~~ 159 (280)
T cd07945 80 VDWIKSAGAKVLNLLTKGSLKHCTEQLRKTPEEHFADIREVIEYAIKNGIEVNIYLEDWSNGMRDSPDYVFQLVDFLSDL 159 (280)
T ss_pred HHHHHHCCCCEEEEEEeCCHHHHHHHHCcCHHHHHHHHHHHHHHHHhCCCEEEEEEEeCCCCCcCCHHHHHHHHHHHHHc
Q ss_pred -CCEEEEEeC----CHHHHHHHHhhcCC----CCEEEEeCCc-----chhhhhhccCC---cccccccc----ccccHHH
Q psy11975 601 -ENIRGVKDT----DNIKLANMANQTKD----LNFSVFAGSA-----GYLLSGLLVGC---AGGINALS----AVLGGPI 659 (786)
Q Consensus 601 -PNVVGIKDS----Dl~ri~~ll~~~~~----~df~Vf~G~D-----elLL~aL~~GA---dG~Isg~a----N~~Pel~ 659 (786)
...+.++|+ .+.++.++++.... -.+.+-+=+| ...+.++.+|+ ++.+.|++ |..-+.+
T Consensus 160 G~~~i~l~DT~G~~~P~~v~~l~~~l~~~~~~~~i~~H~Hnd~Gla~AN~laA~~aGa~~vd~s~~GlGe~aGN~~~E~~ 239 (280)
T cd07945 160 PIKRIMLPDTLGILSPFETYTYISDMVKRYPNLHFDFHAHNDYDLAVANVLAAVKAGIKGLHTTVNGLGERAGNAPLASV 239 (280)
T ss_pred CCCEEEecCCCCCCCHHHHHHHHHHHHhhCCCCeEEEEeCCCCCHHHHHHHHHHHhCCCEEEEecccccccccCccHHHH
Q ss_pred HHHHHHHHcC----CHHHHHHHHHHhhhhH
Q psy11975 660 CELYDLAKAG----KWEEAMKLQHRLVKPD 685 (786)
Q Consensus 660 vaL~eA~~aG----D~eeAreLQ~rL~pLi 685 (786)
+.+++....- |+++..++-+.+....
T Consensus 240 v~~L~~~~g~~t~idl~~l~~~~~~v~~~~ 269 (280)
T cd07945 240 IAVLKDKLKVKTNIDEKRLNRASRLVETFS 269 (280)
T ss_pred HHHHHHhcCCCcCcCHHHHHHHHHHHHHHh
No 338
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=42.11 E-value=5.3e+02 Score=29.53 Aligned_cols=122 Identities=11% Similarity=0.074 Sum_probs=70.9
Q ss_pred CCCeEEEeCCCCCHHHHHHHHHHHHHc--CCCEEEEcCCCCCCCCCCHHHHHHHHHHHHhcCC-CCEEEEeCCCCcCCcc
Q psy11975 513 WQADLLKPQKHTTTRATIDLTQKAAKA--GANAALILCPYYFQKKMTEDLIYEHFISVADNSP-IPVIIYNNTFVTNIDI 589 (786)
Q Consensus 513 GRVPVIaGVGa~ST~EAIELAr~Ae~a--GADAVmViPPyY~kps~S~eeLv~YFraIAeAtd-LPIiLYNiP~~TGv~L 589 (786)
+++-|-+|+. ++..+.++...++ |+|.|.+=.-.- ..+.+++..+.|-+..+ ++|+. |+-+
T Consensus 96 ~~~~vsvG~~----~~d~er~~~L~~a~~~~d~iviD~AhG-----hs~~~i~~ik~ir~~~p~~~via-------GNV~ 159 (343)
T TIGR01305 96 QNVAVSSGSS----DNDLEKMTSILEAVPQLKFICLDVANG-----YSEHFVEFVKLVREAFPEHTIMA-------GNVV 159 (343)
T ss_pred ceEEEEeccC----HHHHHHHHHHHhcCCCCCEEEEECCCC-----cHHHHHHHHHHHHhhCCCCeEEE-------eccc
Confidence 3444434443 3445666666666 599998876543 25667777777777764 55554 4457
Q ss_pred CHHHHHHHHh--CCCE-EE-----E-----EeC-C---HHHHHHHHhhcCCCCEEEEe-CC---cchhhhhhccCCcccc
Q psy11975 590 SVDTLVKLAH--HENI-RG-----V-----KDT-D---NIKLANMANQTKDLNFSVFA-GS---AGYLLSGLLVGCAGGI 648 (786)
Q Consensus 590 SpelL~rLAe--iPNV-VG-----I-----KDS-D---l~ri~~ll~~~~~~df~Vf~-G~---DelLL~aL~~GAdG~I 648 (786)
+++...+|.+ .+.| +| + ++. . +..+.++.+...+.++.|+. |. ..-.+-+|++||+.+|
T Consensus 160 T~e~a~~Li~aGAD~ikVgiGpGSicttR~~~Gvg~pqltAv~~~a~aa~~~~v~VIaDGGIr~~gDI~KALA~GAd~VM 239 (343)
T TIGR01305 160 TGEMVEELILSGADIVKVGIGPGSVCTTRTKTGVGYPQLSAVIECADAAHGLKGHIISDGGCTCPGDVAKAFGAGADFVM 239 (343)
T ss_pred CHHHHHHHHHcCCCEEEEcccCCCcccCceeCCCCcCHHHHHHHHHHHhccCCCeEEEcCCcCchhHHHHHHHcCCCEEE
Confidence 8888888875 3332 33 1 111 1 23334444422222455443 32 1346778999999999
Q ss_pred cc
Q psy11975 649 NA 650 (786)
Q Consensus 649 sg 650 (786)
.|
T Consensus 240 lG 241 (343)
T TIGR01305 240 LG 241 (343)
T ss_pred EC
Confidence 88
No 339
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=42.08 E-value=3.9e+02 Score=29.12 Aligned_cols=117 Identities=15% Similarity=0.083 Sum_probs=69.6
Q ss_pred CCeEEE--eCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHhcCCCCEEEEeCCCCcCCccCH
Q psy11975 514 QADLLK--PQKHTTTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISV 591 (786)
Q Consensus 514 RVPVIa--GVGa~ST~EAIELAr~Ae~aGADAVmViPPyY~kps~S~eeLv~YFraIAeAtdLPIiLYNiP~~TGv~LSp 591 (786)
++||+. .+.. .. +...|..+|||||+++.... +++++.++++ .|...++-.++--- +.
T Consensus 102 ~~PvL~KDFIid---~~---QI~ea~~~GADavLLI~~~L-----~~~~l~~l~~-~a~~lGle~LVEVh--------~~ 161 (247)
T PRK13957 102 KIPVLRKDFILD---EI---QIREARAFGASAILLIVRIL-----TPSQIKSFLK-HASSLGMDVLVEVH--------TE 161 (247)
T ss_pred CCCEEeccccCC---HH---HHHHHHHcCCCEEEeEHhhC-----CHHHHHHHHH-HHHHcCCceEEEEC--------CH
Confidence 578887 3333 22 33445559999999996542 3666666665 56677877665431 24
Q ss_pred HHHHHHHh-CCCEEEEEeC-------CHHHHHHHHhhcCCCCEEEEe--CCcc--hhhhhhccCCcccccccc
Q psy11975 592 DTLVKLAH-HENIRGVKDT-------DNIKLANMANQTKDLNFSVFA--GSAG--YLLSGLLVGCAGGINALS 652 (786)
Q Consensus 592 elL~rLAe-iPNVVGIKDS-------Dl~ri~~ll~~~~~~df~Vf~--G~De--lLL~aL~~GAdG~Isg~a 652 (786)
+.+.+.++ -+.|+||=.- |+....++... .+.++.++. |-.. .+.. +..+++|+.-|.+
T Consensus 162 ~El~~a~~~ga~iiGINnRdL~t~~vd~~~~~~L~~~-ip~~~~~IsESGI~t~~d~~~-l~~~~davLvG~~ 232 (247)
T PRK13957 162 DEAKLALDCGAEIIGINTRDLDTFQIHQNLVEEVAAF-LPPNIVKVGESGIESRSDLDK-FRKLVDAALIGTY 232 (247)
T ss_pred HHHHHHHhCCCCEEEEeCCCCccceECHHHHHHHHhh-CCCCcEEEEcCCCCCHHHHHH-HHHhCCEEEECHH
Confidence 55655554 4789998766 66777777663 344444333 3222 1222 2334888887765
No 340
>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain. FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.
Probab=41.90 E-value=5.5e+02 Score=29.07 Aligned_cols=143 Identities=16% Similarity=0.191 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEc--CC---------------------------------------CCCCCCCCHHHHHH
Q psy11975 525 TTRATIDLTQKAAKAGANAALIL--CP---------------------------------------YYFQKKMTEDLIYE 563 (786)
Q Consensus 525 ST~EAIELAr~Ae~aGADAVmVi--PP---------------------------------------yY~kps~S~eeLv~ 563 (786)
+-..+.++.+.|+++|++++++. +| .++... ..+
T Consensus 129 d~~~~~~l~~ra~~ag~~alvltvD~p~~g~r~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~ 203 (344)
T cd02922 129 DRTKTEELLKRAEKLGAKAIFLTVDAPVLGKRERDERLKAEEAVSDGPAGKKTKAKGGGAGRAMSGFIDPTL-----TWD 203 (344)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEECCCCCcCcchhhhhhcCCcCccccccccccccccchHHHHHhhccCCCC-----CHH
Q ss_pred HHHHHHhcCCCCEEEEeCCCCcCCccCHHHHHHHHh--CCCEE-----------EEEeC-CHHHHHHHHhhcCCCCEEEE
Q psy11975 564 HFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAH--HENIR-----------GVKDT-DNIKLANMANQTKDLNFSVF 629 (786)
Q Consensus 564 YFraIAeAtdLPIiLYNiP~~TGv~LSpelL~rLAe--iPNVV-----------GIKDS-Dl~ri~~ll~~~~~~df~Vf 629 (786)
..+.|.+.+++||++= |+ .+++...++.+ ...|+ +++-- -+..+.+.+. ..++++.|+
T Consensus 204 ~i~~l~~~~~~PvivK------gv-~~~~dA~~a~~~G~d~I~vsnhgG~~~d~~~~~~~~L~~i~~~~~-~~~~~~~vi 275 (344)
T cd02922 204 DIKWLRKHTKLPIVLK------GV-QTVEDAVLAAEYGVDGIVLSNHGGRQLDTAPAPIEVLLEIRKHCP-EVFDKIEVY 275 (344)
T ss_pred HHHHHHHhcCCcEEEE------cC-CCHHHHHHHHHcCCCEEEEECCCcccCCCCCCHHHHHHHHHHHHH-HhCCCceEE
Q ss_pred eCCc----chhhhhhccCCccccccccccccHHHHHHHHHHHcCCHHHHHHHHHHhhhhHHHH
Q psy11975 630 AGSA----GYLLSGLLVGCAGGINALSAVLGGPICELYDLAKAGKWEEAMKLQHRLVKPDVTV 688 (786)
Q Consensus 630 ~G~D----elLL~aL~~GAdG~Isg~aN~~Pel~vaL~eA~~aGD~eeAreLQ~rL~pLi~~l 688 (786)
.... ...+.+|++|++++..|.. -|+.....|...-...++.....+...+
T Consensus 276 ~~GGIr~G~Dv~kalaLGA~aV~iG~~--------~l~~l~~~G~~gv~~~l~~l~~EL~~~m 330 (344)
T cd02922 276 VDGGVRRGTDVLKALCLGAKAVGLGRP--------FLYALSAYGEEGVEKAIQILKDEIETTM 330 (344)
T ss_pred EeCCCCCHHHHHHHHHcCCCEEEECHH--------HHHHHhhccHHHHHHHHHHHHHHHHHHH
No 341
>cd07372 2A5CPDO_B The beta subunit of the Class III extradiol dioxygenase, 2-amino-5-chlorophenol 1,6-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol. 2-amino-5-chlorophenol 1,6-dioxygenase (2A5CPDO), catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol, which is an intermediate during p-chloronitrobenzene degradation. This enzyme is a member of the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. The active 2A5CPDO enzyme is probably a heterotetramer, composed of two alpha and two beta subunits. The alpha and beta subunits share significant sequence similarity and may have evolved by gene duplication. This model describes the beta subunit, which contains a putative metal binding site with two conserved histidines; these residues are equivalent to two out of three Fe(II) bindin
Probab=41.83 E-value=1.5e+02 Score=32.71 Aligned_cols=149 Identities=7% Similarity=0.007 Sum_probs=74.1
Q ss_pred HHHHHHHHHcCCCEEEEcCCCCCC---------C-----------------C---CCHHHHHHHHHHHHhcCCCCEEEEe
Q psy11975 530 IDLTQKAAKAGANAALILCPYYFQ---------K-----------------K---MTEDLIYEHFISVADNSPIPVIIYN 580 (786)
Q Consensus 530 IELAr~Ae~aGADAVmViPPyY~k---------p-----------------s---~S~eeLv~YFraIAeAtdLPIiLYN 580 (786)
.++++.+++.+.|.|+|+.|.+.. + . ..+.+|.+...+.+.+.++|+..-+
T Consensus 40 ~~~~~~i~~~~Pd~IVViSpHw~~~~~~~~~~~p~~~G~~~~~~~p~~~~~~~~~~gd~eLA~~i~~~~~~~Gi~~~~~~ 119 (294)
T cd07372 40 ERARESIEALKPDVLLVHSPHWITSVGHHFLGVPELSGRSVDPIFPNLFRYDFSMNVDVELAEACCEEGRKAGLVTKMMR 119 (294)
T ss_pred HHHHHHHHHcCCCEEEEECCCcccccCeeeecCCcccccccccccccceeeccCCCCCHHHHHHHHHHHHHCCCCeeecc
Confidence 455667778899999999998211 0 0 0266677777777777788887544
Q ss_pred CCCC---cCCccCHHHHHHHHhCCCEEEEE-----------eC--CHHHHHHHHhh---cCCCCEEEEeCCcchhhh---
Q psy11975 581 NTFV---TNIDISVDTLVKLAHHENIRGVK-----------DT--DNIKLANMANQ---TKDLNFSVFAGSAGYLLS--- 638 (786)
Q Consensus 581 iP~~---TGv~LSpelL~rLAeiPNVVGIK-----------DS--Dl~ri~~ll~~---~~~~df~Vf~G~DelLL~--- 638 (786)
.+.. .|..++...+..=.++| ||-|= .+ ...++-+.+++ ..+.++.|+ |...+-..
T Consensus 120 ~~~~~LDHGt~vPL~fl~p~~~~p-vV~is~~~l~~~~~~~~~~~~~~~lG~ai~~al~~~~~RV~vI-aSG~LSH~l~~ 197 (294)
T cd07372 120 NPRFRVDYGTITTLHMIRPQWDIP-VVGISANNTPYYLNTKEGLGEMDVLGKATREAIRKTGRRAVLL-ASNTLSHWHFH 197 (294)
T ss_pred CCCCCCCchHHHHHHHhCCCCCCc-EEEEecCcccccccccCCHHHHHHHHHHHHHHHHhcCCeEEEE-EeCcccccCcc
Confidence 4332 23222222221101233 33221 11 22223333321 123444443 33332111
Q ss_pred hhccCCccccccccc---cccHHHHHHHHHHHcCCHHHHHHHHHHh
Q psy11975 639 GLLVGCAGGINALSA---VLGGPICELYDLAKAGKWEEAMKLQHRL 681 (786)
Q Consensus 639 aL~~GAdG~Isg~aN---~~Pel~vaL~eA~~aGD~eeAreLQ~rL 681 (786)
.-..|-.|... ... +.++.=.++.+.+++||+++..++...+
T Consensus 198 ~~~~~p~~~~~-~~~~~~~~~~fD~~vl~~l~~gd~~~l~~~~~~~ 242 (294)
T cd07372 198 EEPAPPEDMSK-EHPETYAGYQWDMRMIELMRQGRMKEVFRLLPQF 242 (294)
T ss_pred CCCCCcccccc-ccccchhHHHHHHHHHHHHHcCCHHHHHhcCHHH
Confidence 11122222211 111 3447778899999999998877665443
No 342
>TIGR03884 sel_bind_Methan selenium-binding protein. This model describes a homopentameric selenium-binding protein with a suggested role in selenium transport and delivery to selenophosphate synthase, the SelD protein. This protein family is closely related to pfam01906, but is shorter because of several deleted regions. It is restricted to the archaeal genus Methanococcus.
Probab=41.58 E-value=39 Score=30.38 Aligned_cols=31 Identities=10% Similarity=0.276 Sum_probs=24.7
Q ss_pred EEEeCCCCCHHHHH-HHHHHHHHcCCCEEEEcC
Q psy11975 517 LLKPQKHTTTRATI-DLTQKAAKAGANAALILC 548 (786)
Q Consensus 517 VIaGVGa~ST~EAI-ELAr~Ae~aGADAVmViP 548 (786)
||.+.+. +.++|+ ++.++|+++||+||+-+-
T Consensus 19 iv~~~~~-d~d~Al~eM~e~A~~lGAnAVVGvr 50 (74)
T TIGR03884 19 IVSTESD-NVDEIVENLREKVKAKGGMGLIAFR 50 (74)
T ss_pred EEEEecC-CHHHHHHHHHHHHHHcCCCEEEEEE
Confidence 6667777 788886 467889999999998763
No 343
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=41.44 E-value=1.5e+02 Score=31.79 Aligned_cols=118 Identities=14% Similarity=0.117 Sum_probs=67.4
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHhcCCCCEEEE---eCCCCcCC-ccCHHHHHHHHh-
Q psy11975 525 TTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIY---NNTFVTNI-DISVDTLVKLAH- 599 (786)
Q Consensus 525 ST~EAIELAr~Ae~aGADAVmViPPyY~kps~S~eeLv~YFraIAeAtdLPIiLY---NiP~~TGv-~LSpelL~rLAe- 599 (786)
++..|+ .+..+++|+..|.++.||-..- .+.+.+||+ +.++.|.-. ++.....+ .++++.+.++++
T Consensus 106 t~~~A~--~~AL~alg~~RIalvTPY~~~v---~~~~~~~l~----~~G~eV~~~~~~~~~~~~~ia~i~p~~i~~~~~~ 176 (239)
T TIGR02990 106 TPSSAA--VDGLAALGVRRISLLTPYTPET---SRPMAQYFA----VRGFEIVNFTCLGLTDDREMARISPDCIVEAALA 176 (239)
T ss_pred CHHHHH--HHHHHHcCCCEEEEECCCcHHH---HHHHHHHHH----hCCcEEeeeeccCCCCCceeeecCHHHHHHHHHH
Confidence 344444 4444556999999999974321 455566654 455555443 32211111 378999888874
Q ss_pred --CCCEEEEEeC--CH---HHHHHHHhhcCCCCEEEEeCCcchhhhhhc-cCCcccccccccc
Q psy11975 600 --HENIRGVKDT--DN---IKLANMANQTKDLNFSVFAGSAGYLLSGLL-VGCAGGINALSAV 654 (786)
Q Consensus 600 --iPNVVGIKDS--Dl---~ri~~ll~~~~~~df~Vf~G~DelLL~aL~-~GAdG~Isg~aN~ 654 (786)
.|..-+|=.+ ++ .-+.++ ++. -+.-|++.+-..+..+|+ +|....+.+.+-+
T Consensus 177 ~~~~~aDAifisCTnLrt~~vi~~l-E~~--lGkPVlsSNqat~W~~Lr~~G~~~~~~g~G~L 236 (239)
T TIGR02990 177 AFDPDADALFLSCTALRAATCAQRI-EQA--IGKPVVTSNQATAWRCLRLCGDPDMRPGYGRL 236 (239)
T ss_pred hcCCCCCEEEEeCCCchhHHHHHHH-HHH--HCCCEEEHHHHHHHHHHHHcCCCCCCCCCcCc
Confidence 5555555444 33 333333 311 245678887777666664 6777777765533
No 344
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=40.91 E-value=2.3e+02 Score=29.27 Aligned_cols=108 Identities=13% Similarity=0.082 Sum_probs=62.3
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHhcCCCCEE--EE----eCCCCcCCccCHHHHHHHH
Q psy11975 525 TTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVI--IY----NNTFVTNIDISVDTLVKLA 598 (786)
Q Consensus 525 ST~EAIELAr~Ae~aGADAVmViPPyY~kps~S~eeLv~YFraIAeAtdLPIi--LY----NiP~~TGv~LSpelL~rLA 598 (786)
+..++.++++.+.++|+.++.+. + .+.++.|.+.+++||+ +| |.|-..+ -..+.+.++.
T Consensus 21 ~~~~~~~~a~a~~~~G~~~~~~~-------~------~~~i~~i~~~~~~Pil~~~~~d~~~~~~~~~--~~~~~v~~a~ 85 (221)
T PRK01130 21 SPEIMAAMALAAVQGGAVGIRAN-------G------VEDIKAIRAVVDVPIIGIIKRDYPDSEVYIT--PTLKEVDALA 85 (221)
T ss_pred CHHHHHHHHHHHHHCCCeEEEcC-------C------HHHHHHHHHhCCCCEEEEEecCCCCCCceEC--CCHHHHHHHH
Confidence 56789999999999999998873 1 3566777777899997 44 3232211 1335565555
Q ss_pred hCC-CEEEEEe--------CCHHHHHHHHhhcCCCCEEEEeCCc--chhhhhhccCCccccc
Q psy11975 599 HHE-NIRGVKD--------TDNIKLANMANQTKDLNFSVFAGSA--GYLLSGLLVGCAGGIN 649 (786)
Q Consensus 599 eiP-NVVGIKD--------SDl~ri~~ll~~~~~~df~Vf~G~D--elLL~aL~~GAdG~Is 649 (786)
+.. .++-+=- ..+..+.+.+++ . .++.++.+.. +.+..+...|++-+..
T Consensus 86 ~aGad~I~~d~~~~~~p~~~~~~~~i~~~~~-~-~~i~vi~~v~t~ee~~~a~~~G~d~i~~ 145 (221)
T PRK01130 86 AAGADIIALDATLRPRPDGETLAELVKRIKE-Y-PGQLLMADCSTLEEGLAAQKLGFDFIGT 145 (221)
T ss_pred HcCCCEEEEeCCCCCCCCCCCHHHHHHHHHh-C-CCCeEEEeCCCHHHHHHHHHcCCCEEEc
Confidence 432 2444311 122333333331 1 5666665543 3355566788876543
No 345
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=40.90 E-value=5.1e+02 Score=29.58 Aligned_cols=106 Identities=11% Similarity=-0.007 Sum_probs=60.9
Q ss_pred CCCeEEEeCC-CCCHHHHHHHHHHHHHcCCCEEEEc------CCCCCCCCCCHHHHHHHHHHHHhcCCCCEEEEeCCCCc
Q psy11975 513 WQADLLKPQK-HTTTRATIDLTQKAAKAGANAALIL------CPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVT 585 (786)
Q Consensus 513 GRVPVIaGVG-a~ST~EAIELAr~Ae~aGADAVmVi------PPyY~kps~S~eeLv~YFraIAeAtdLPIiLYNiP~~T 585 (786)
++..+|+|=+ -.+.+..++.|+.+.+.|+..+--. .|+-|.- ... +-...+.++++..++|++---
T Consensus 117 ~~~~~iaGpc~iE~~~~~~~~A~~lk~~g~~~~r~~~~kpRtsp~~f~g-~~~-e~l~~L~~~~~~~Gl~~~t~v----- 189 (360)
T PRK12595 117 GNQSFIFGPCSVESYEQVEAVAKALKAKGLKLLRGGAFKPRTSPYDFQG-LGV-EGLKILKQVADEYGLAVISEI----- 189 (360)
T ss_pred CCeeeEEecccccCHHHHHHHHHHHHHcCCcEEEccccCCCCCCccccC-CCH-HHHHHHHHHHHHcCCCEEEee-----
Confidence 3445666532 3467888999999999888755533 2332322 124 456677888999999998632
Q ss_pred CCccCHHHHHHHHhCCCEEEEEeC-----CHHHHHHHHhhcCCCCEEEEeCC
Q psy11975 586 NIDISVDTLVKLAHHENIRGVKDT-----DNIKLANMANQTKDLNFSVFAGS 632 (786)
Q Consensus 586 Gv~LSpelL~rLAeiPNVVGIKDS-----Dl~ri~~ll~~~~~~df~Vf~G~ 632 (786)
++++.+..++++ +-.+|-. +..-+.++.. .+..+-+=.|.
T Consensus 190 ---~d~~~~~~l~~~--vd~lkI~s~~~~n~~LL~~~a~--~gkPVilk~G~ 234 (360)
T PRK12595 190 ---VNPADVEVALDY--VDVIQIGARNMQNFELLKAAGR--VNKPVLLKRGL 234 (360)
T ss_pred ---CCHHHHHHHHHh--CCeEEECcccccCHHHHHHHHc--cCCcEEEeCCC
Confidence 344555555554 4456666 3333333322 33445555554
No 346
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=40.74 E-value=4.7e+02 Score=27.76 Aligned_cols=122 Identities=11% Similarity=0.017 Sum_probs=69.0
Q ss_pred CCeEEEeCCCCCHHH--HHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHhcCCCCEEEEeCCCCcCCccCH
Q psy11975 514 QADLLKPQKHTTTRA--TIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISV 591 (786)
Q Consensus 514 RVPVIaGVGa~ST~E--AIELAr~Ae~aGADAVmViPPyY~kps~S~eeLv~YFraIAeAtdLPIiLYNiP~~TGv~LSp 591 (786)
++||++=+--+..-. .-++++.++++|+|++++..= ..|++.++.+. +...++..++.=.|. -+.
T Consensus 76 ~~pv~lm~y~n~~~~~G~~~fi~~~~~aG~~giiipDl-------~~ee~~~~~~~-~~~~g~~~i~~i~P~-----T~~ 142 (242)
T cd04724 76 TIPIVLMGYYNPILQYGLERFLRDAKEAGVDGLIIPDL-------PPEEAEEFREA-AKEYGLDLIFLVAPT-----TPD 142 (242)
T ss_pred CCCEEEEEecCHHHHhCHHHHHHHHHHCCCcEEEECCC-------CHHHHHHHHHH-HHHcCCcEEEEeCCC-----CCH
Confidence 467654333332222 256788889999999988531 13555555554 456787666665564 356
Q ss_pred HHHHHHHh-CCCEEEE---EeC---------CH-HHHHHHHhhcCCCCEEEEeCCc----chhhhhhccCCcccccccc
Q psy11975 592 DTLVKLAH-HENIRGV---KDT---------DN-IKLANMANQTKDLNFSVFAGSA----GYLLSGLLVGCAGGINALS 652 (786)
Q Consensus 592 elL~rLAe-iPNVVGI---KDS---------Dl-~ri~~ll~~~~~~df~Vf~G~D----elLL~aL~~GAdG~Isg~a 652 (786)
+.+..+++ ...++.+ .-. +. +.+.++.+ . .++.|..|.. +.+.....+ ++|++.|++
T Consensus 143 ~~i~~i~~~~~~~vy~~s~~g~tG~~~~~~~~~~~~i~~lr~-~--~~~pI~vggGI~~~e~~~~~~~~-ADgvVvGSa 217 (242)
T cd04724 143 ERIKKIAELASGFIYYVSRTGVTGARTELPDDLKELIKRIRK-Y--TDLPIAVGFGISTPEQAAEVAKY-ADGVIVGSA 217 (242)
T ss_pred HHHHHHHhhCCCCEEEEeCCCCCCCccCCChhHHHHHHHHHh-c--CCCcEEEEccCCCHHHHHHHHcc-CCEEEECHH
Confidence 77777775 3343332 111 22 33333433 2 3556666653 234455567 999999964
No 347
>PRK09250 fructose-bisphosphate aldolase; Provisional
Probab=40.66 E-value=54 Score=37.26 Aligned_cols=58 Identities=12% Similarity=0.056 Sum_probs=47.2
Q ss_pred CCCCeEEE-eCCCCCHHHHHHHHHHH---HHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHhcC
Q psy11975 512 EWQADLLK-PQKHTTTRATIDLTQKA---AKAGANAALILCPYYFQKKMTEDLIYEHFISVADNS 572 (786)
Q Consensus 512 aGRVPVIa-GVGa~ST~EAIELAr~A---e~aGADAVmViPPyY~kps~S~eeLv~YFraIAeAt 572 (786)
+|++|||+ |=...+.++.++.++.| .++||.++.+-=-.|..+. ++-++.+++|.+-.
T Consensus 279 ag~vpVviAGG~k~~~~e~L~~v~~a~~~i~aGa~Gv~iGRNIfQ~~~---~ea~~~~~~i~~i~ 340 (348)
T PRK09250 279 MGRRGLINSGGASKGEDDLLDAVRTAVINKRAGGMGLIIGRKAFQRPM---AEGVKLLNAIQDVY 340 (348)
T ss_pred cCCceEEEeCCCCCCHHHHHHHHHHHHHhhhcCCcchhhchhhhcCCc---HHHHHHHHHHHHHh
Confidence 67899876 44445788999999999 9999999999988887764 66678888887654
No 348
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=40.65 E-value=97 Score=33.64 Aligned_cols=58 Identities=14% Similarity=-0.025 Sum_probs=46.2
Q ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHhcC--CCCEEEE
Q psy11975 522 KHTTTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNS--PIPVIIY 579 (786)
Q Consensus 522 Ga~ST~EAIELAr~Ae~aGADAVmViPPyY~kps~S~eeLv~YFraIAeAt--dLPIiLY 579 (786)
+..+.+...+++++..+.|++++.+.--.--...++.+|-.+..+.+.+++ .+||+.-
T Consensus 16 g~iD~~~l~~l~~~l~~~Gv~gi~v~GstGE~~~Ls~eEr~~l~~~~~~~~~~~~pvi~g 75 (289)
T cd00951 16 GSFDEDAYRAHVEWLLSYGAAALFAAGGTGEFFSLTPDEYAQVVRAAVEETAGRVPVLAG 75 (289)
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCCEEEe
Confidence 356788889999999999999999886543333356999999999888877 4898864
No 349
>COG4464 CapC Capsular polysaccharide biosynthesis protein [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=40.40 E-value=1e+02 Score=33.27 Aligned_cols=74 Identities=12% Similarity=0.159 Sum_probs=52.6
Q ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCC--CCHHHHHHHHHHHH---hcCCCCEEEEeCCCCcCCccCHHHHHH
Q psy11975 522 KHTTTRATIDLTQKAAKAGANAALILCPYYFQKK--MTEDLIYEHFISVA---DNSPIPVIIYNNTFVTNIDISVDTLVK 596 (786)
Q Consensus 522 Ga~ST~EAIELAr~Ae~aGADAVmViPPyY~kps--~S~eeLv~YFraIA---eAtdLPIiLYNiP~~TGv~LSpelL~r 596 (786)
|..+.++++++++.|.+.|+.-+++++-++ .+. -+.+.+.+-+.++- +.-.+|+-++ |+ .-+-++.+++..
T Consensus 15 Gp~s~eesl~ml~~A~~qGvt~iVaTsHh~-~g~y~n~~~~v~~~~~~ln~~~~~~aidl~v~--pG-QEIrIt~~vl~~ 90 (254)
T COG4464 15 GPKSLEESLAMLREAVRQGVTKIVATSHHL-HGRYENPIEKVKEKANQLNEILKKEAIDLKVL--PG-QEIRITGDVLDD 90 (254)
T ss_pred CCCcHHHHHHHHHHHHHcCceEEeeccccc-CCccCChHHHHHHHHHHHHHHHHhhcCCceec--cC-ceEEEchHHHHH
Confidence 568899999999999999999988886443 321 13555655555544 4446887776 44 456688999999
Q ss_pred HHh
Q psy11975 597 LAH 599 (786)
Q Consensus 597 LAe 599 (786)
|.+
T Consensus 91 l~~ 93 (254)
T COG4464 91 LDK 93 (254)
T ss_pred Hhc
Confidence 973
No 350
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=40.21 E-value=1.2e+02 Score=34.05 Aligned_cols=70 Identities=7% Similarity=0.030 Sum_probs=46.6
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHhcC--CCCEEEEeCCCCcCCccCHHHHHHHH
Q psy11975 521 QKHTTTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNS--PIPVIIYNNTFVTNIDISVDTLVKLA 598 (786)
Q Consensus 521 VGa~ST~EAIELAr~Ae~aGADAVmViPPyY~kps~S~eeLv~YFraIAeAt--dLPIiLYNiP~~TGv~LSpelL~rLA 598 (786)
+...+.++.+++++.+.++|||.|.+.-..-. ++++++.++++.|-++. ++||-++ ...++...+...|+
T Consensus 138 a~~~~~e~l~~~a~~~~~~Ga~~i~i~DT~G~---~~P~~v~~~v~~l~~~l~~~i~ig~H-----~HnnlGla~ANsla 209 (337)
T PRK08195 138 SHMAPPEKLAEQAKLMESYGAQCVYVVDSAGA---LLPEDVRDRVRALRAALKPDTQVGFH-----GHNNLGLGVANSLA 209 (337)
T ss_pred ccCCCHHHHHHHHHHHHhCCCCEEEeCCCCCC---CCHHHHHHHHHHHHHhcCCCCeEEEE-----eCCCcchHHHHHHH
Confidence 34557788888888888888888777765432 34788888888888776 5676553 23445555444443
No 351
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=40.21 E-value=1e+02 Score=34.37 Aligned_cols=74 Identities=11% Similarity=0.100 Sum_probs=43.8
Q ss_pred eCCC-CCHHHHHHHHHHHHHcCCCEEEEcCCC-----CCCCC--CCHHHHHHHHHHHHhcC-CCCEEEEeCCCCcCCccC
Q psy11975 520 PQKH-TTTRATIDLTQKAAKAGANAALILCPY-----YFQKK--MTEDLIYEHFISVADNS-PIPVIIYNNTFVTNIDIS 590 (786)
Q Consensus 520 GVGa-~ST~EAIELAr~Ae~aGADAVmViPPy-----Y~kps--~S~eeLv~YFraIAeAt-dLPIiLYNiP~~TGv~LS 590 (786)
|+.. .+..+++++++.++++|+|++.+..-. |.... .....-.+++.+|.+++ ++||+ +| |--.+
T Consensus 143 g~~~~~t~~~~~~~~~~l~~aG~d~i~vh~Rt~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~~iPVI-~n-----GgI~s 216 (333)
T PRK11815 143 GIDDQDSYEFLCDFVDTVAEAGCDTFIVHARKAWLKGLSPKENREIPPLDYDRVYRLKRDFPHLTIE-IN-----GGIKT 216 (333)
T ss_pred eeCCCcCHHHHHHHHHHHHHhCCCEEEEcCCchhhcCCCccccccCCCcCHHHHHHHHHhCCCCeEE-EE-----CCcCC
Confidence 4433 346788999999999999999987432 11000 00001145666777765 78864 33 33456
Q ss_pred HHHHHHHHh
Q psy11975 591 VDTLVKLAH 599 (786)
Q Consensus 591 pelL~rLAe 599 (786)
++.+.++.+
T Consensus 217 ~eda~~~l~ 225 (333)
T PRK11815 217 LEEAKEHLQ 225 (333)
T ss_pred HHHHHHHHh
Confidence 676666653
No 352
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=40.15 E-value=1.3e+02 Score=32.11 Aligned_cols=66 Identities=11% Similarity=-0.009 Sum_probs=30.3
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHhcCCCCEEEEeCCCCcCCccCHHHHHHH
Q psy11975 525 TTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKL 597 (786)
Q Consensus 525 ST~EAIELAr~Ae~aGADAVmViPPyY~kps~S~eeLv~YFraIAeAtdLPIiLYNiP~~TGv~LSpelL~rL 597 (786)
......+.++.|.+.|.....-+.-. +.. +++.+.+..+++.+ .+...+ .++...|. +.|+.+.+|
T Consensus 110 ~~~~~~~~i~~ak~~G~~v~~~~~~~-~~~--~~~~~~~~~~~~~~-~G~d~i--~l~DT~G~-~~P~~v~~l 175 (263)
T cd07943 110 EADVSEQHIGAARKLGMDVVGFLMMS-HMA--SPEELAEQAKLMES-YGADCV--YVTDSAGA-MLPDDVRER 175 (263)
T ss_pred hHHHHHHHHHHHHHCCCeEEEEEEec-cCC--CHHHHHHHHHHHHH-cCCCEE--EEcCCCCC-cCHHHHHHH
Confidence 34556666666666665422222111 122 35556665555543 233322 34445553 444444444
No 353
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=40.14 E-value=1.4e+02 Score=32.83 Aligned_cols=76 Identities=11% Similarity=0.209 Sum_probs=0.0
Q ss_pred EEe--CCCCCHHHHHHHHHHHHHcCCCEEEEc----CCCCCC-CCCCHHHHHHHHHHHHhcCCCCEEEEeCCCCcCCccC
Q psy11975 518 LKP--QKHTTTRATIDLTQKAAKAGANAALIL----CPYYFQ-KKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDIS 590 (786)
Q Consensus 518 IaG--VGa~ST~EAIELAr~Ae~aGADAVmVi----PPyY~k-ps~S~eeLv~YFraIAeAtdLPIiLYNiP~~TGv~LS 590 (786)
+.| .+.++.+|+.+..+.. |+|.+.+. -+.|-+ +.++ ++..++|.+++++|+++.- |..++
T Consensus 145 ~~g~~~~~t~~eea~~f~~~t---gvD~Lavs~Gt~hg~~~~~~~l~----~e~L~~i~~~~~iPlv~hG-----gSGi~ 212 (282)
T TIGR01859 145 VDEKEAELADPDEAEQFVKET---GVDYLAAAIGTSHGKYKGEPGLD----FERLKEIKELTNIPLVLHG-----ASGIP 212 (282)
T ss_pred ccccccccCCHHHHHHHHHHH---CcCEEeeccCccccccCCCCccC----HHHHHHHHHHhCCCEEEEC-----CCCCC
Q ss_pred HHHHHHHHhCCCEEEE
Q psy11975 591 VDTLVKLAHHENIRGV 606 (786)
Q Consensus 591 pelL~rLAeiPNVVGI 606 (786)
.+.+.++.+. ++.+|
T Consensus 213 ~e~i~~~i~~-Gi~ki 227 (282)
T TIGR01859 213 EEQIKKAIKL-GIAKI 227 (282)
T ss_pred HHHHHHHHHc-CCCEE
No 354
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=40.01 E-value=1.5e+02 Score=31.83 Aligned_cols=75 Identities=8% Similarity=0.001 Sum_probs=48.0
Q ss_pred CCeEEEeCCCC-CHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHhcCC-CCEEEEeCCCCcCCccCH
Q psy11975 514 QADLLKPQKHT-TTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSP-IPVIIYNNTFVTNIDISV 591 (786)
Q Consensus 514 RVPVIaGVGa~-ST~EAIELAr~Ae~aGADAVmViPPyY~kps~S~eeLv~YFraIAeAtd-LPIiLYNiP~~TGv~LSp 591 (786)
++||.+=+... ...+.+++++.++++|||++.+-. .|... ...-.++.++|.++++ +||+- | |--.+.
T Consensus 134 ~~PVsvKiR~~~~~~~~~~~a~~l~~aGad~i~Vd~-~~~g~---~~a~~~~I~~i~~~~~~ipIIg-N-----GgI~s~ 203 (231)
T TIGR00736 134 NKPIFVKIRGNCIPLDELIDALNLVDDGFDGIHVDA-MYPGK---PYADMDLLKILSEEFNDKIIIG-N-----NSIDDI 203 (231)
T ss_pred CCcEEEEeCCCCCcchHHHHHHHHHHcCCCEEEEee-CCCCC---chhhHHHHHHHHHhcCCCcEEE-E-----CCcCCH
Confidence 46777744432 345789999999999999998853 33211 1134677788888774 77664 2 333556
Q ss_pred HHHHHHH
Q psy11975 592 DTLVKLA 598 (786)
Q Consensus 592 elL~rLA 598 (786)
+...+..
T Consensus 204 eda~e~l 210 (231)
T TIGR00736 204 ESAKEML 210 (231)
T ss_pred HHHHHHH
Confidence 6655554
No 355
>TIGR00510 lipA lipoate synthase. The family shows strong sequence conservation.
Probab=39.77 E-value=1.3e+02 Score=33.33 Aligned_cols=56 Identities=11% Similarity=0.094 Sum_probs=39.3
Q ss_pred CeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCC--------CCHHHHHHHHHHHHhcCC
Q psy11975 515 ADLLKPQKHTTTRATIDLTQKAAKAGANAALILCPYYFQKK--------MTEDLIYEHFISVADNSP 573 (786)
Q Consensus 515 VPVIaGVGa~ST~EAIELAr~Ae~aGADAVmViPPyY~kps--------~S~eeLv~YFraIAeAtd 573 (786)
.-+|+|. +.+-+|.++..+...++|+|.+-+.. |+.|+ .-.-+.++.|+++|...+
T Consensus 211 TgiIVGl-GETeee~~etl~~Lrelg~d~v~igq--Yl~p~~~~~~v~~~~~p~~f~~~~~~a~~~g 274 (302)
T TIGR00510 211 SGIMVGL-GETNEEIKQTLKDLRDHGVTMVTLGQ--YLRPSRRHLPVKRYVSPEEFDYYRSVALEMG 274 (302)
T ss_pred ceEEEEC-CCCHHHHHHHHHHHHhcCCCEEEeec--ccCCCCCCCccccCCCHHHHHHHHHHHHHcC
Confidence 3489999 77899999999999999999887774 55553 012234566666666544
No 356
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=39.75 E-value=63 Score=31.63 Aligned_cols=73 Identities=15% Similarity=0.084 Sum_probs=44.0
Q ss_pred EEEeCCCCCHHHHHHHHHHHHHcCCCEEEEcCC--CCCCCCCCHHHHHHHHHHHHhcCCCCEEEEeCCCCcCCccCHHHH
Q psy11975 517 LLKPQKHTTTRATIDLTQKAAKAGANAALILCP--YYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTL 594 (786)
Q Consensus 517 VIaGVGa~ST~EAIELAr~Ae~aGADAVmViPP--yY~kps~S~eeLv~YFraIAeAtdLPIiLYNiP~~TGv~LSpelL 594 (786)
.++|+...+. +.++.+.+.|+|.+++.+= -..++......-.++++.+.+..++||++- .| ++.+.+
T Consensus 96 ~~~g~~~~t~----~~~~~~~~~g~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~a~-----GG--i~~~~i 164 (196)
T cd00564 96 LIIGVSTHSL----EEALRAEELGADYVGFGPVFPTPTKPGAGPPLGLELLREIAELVEIPVVAI-----GG--ITPENA 164 (196)
T ss_pred CEEEeeCCCH----HHHHHHhhcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhCCCCEEEE-----CC--CCHHHH
Confidence 4566666555 4456678889999988642 111111001123567777777777887765 24 456788
Q ss_pred HHHHhC
Q psy11975 595 VKLAHH 600 (786)
Q Consensus 595 ~rLAei 600 (786)
.++.+.
T Consensus 165 ~~~~~~ 170 (196)
T cd00564 165 AEVLAA 170 (196)
T ss_pred HHHHHc
Confidence 777753
No 357
>COG0113 HemB Delta-aminolevulinic acid dehydratase [Coenzyme metabolism]
Probab=39.58 E-value=66 Score=36.06 Aligned_cols=51 Identities=14% Similarity=0.212 Sum_probs=39.9
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHhcCCCCEEEEeCC
Q psy11975 523 HTTTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNT 582 (786)
Q Consensus 523 a~ST~EAIELAr~Ae~aGADAVmViPPyY~kps~S~eeLv~YFraIAeAtdLPIiLYNiP 582 (786)
-.+..||++.+..=.+-|||.+||=|-.. -.+-.+.+.+.+++|+..||.-
T Consensus 229 paN~~EAlrE~~lD~~EGAD~lMVKPal~---------YLDIi~~vk~~~~lP~~AYqVS 279 (330)
T COG0113 229 PANRREALREIELDIEEGADILMVKPALP---------YLDIIRRVKEEFNLPVAAYQVS 279 (330)
T ss_pred CcCHHHHHHHHHhhHhcCCcEEEEcCCch---------HHHHHHHHHHhcCCCeEEEecc
Confidence 34678888888888888999999987432 2455677888889999999953
No 358
>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF. A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.
Probab=39.56 E-value=1.8e+02 Score=30.69 Aligned_cols=99 Identities=11% Similarity=0.094 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHhcC-CCCEEEEeCCCCcCCccCHHHHHHHHhCCCEE
Q psy11975 526 TRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNS-PIPVIIYNNTFVTNIDISVDTLVKLAHHENIR 604 (786)
Q Consensus 526 T~EAIELAr~Ae~aGADAVmViPPyY~kps~S~eeLv~YFraIAeAt-dLPIiLYNiP~~TGv~LSpelL~rLAeiPNVV 604 (786)
.+...+-++.+.++|||++++-.=--.. .+ +. +..+.+.+++ ++|+.+.-.-..+- =..+.+..|.++ +|.
T Consensus 71 ~~~M~~dI~~~~~~GadG~VfG~L~~dg-~i-D~---~~~~~Li~~a~~~~~tFHRAfD~~~--d~~~al~~L~~l-G~~ 142 (201)
T PF03932_consen 71 IEIMKEDIRMLRELGADGFVFGALTEDG-EI-DE---EALEELIEAAGGMPVTFHRAFDEVP--DPEEALEQLIEL-GFD 142 (201)
T ss_dssp HHHHHHHHHHHHHTT-SEEEE--BETTS-SB--H---HHHHHHHHHHTTSEEEE-GGGGGSS--THHHHHHHHHHH-T-S
T ss_pred HHHHHHHHHHHHHcCCCeeEEEeECCCC-Cc-CH---HHHHHHHHhcCCCeEEEeCcHHHhC--CHHHHHHHHHhc-CCC
Confidence 3445666888889999999987421111 11 22 3344444444 79988865433221 133566677666 566
Q ss_pred EEEeC--------CHHHHHHHHhhcCCCCEEEEeCCc
Q psy11975 605 GVKDT--------DNIKLANMANQTKDLNFSVFAGSA 633 (786)
Q Consensus 605 GIKDS--------Dl~ri~~ll~~~~~~df~Vf~G~D 633 (786)
.|=-+ .++.+.+++++ ..+++.|+.|..
T Consensus 143 rVLTSGg~~~a~~g~~~L~~lv~~-a~~~i~Im~GgG 178 (201)
T PF03932_consen 143 RVLTSGGAPTALEGIENLKELVEQ-AKGRIEIMPGGG 178 (201)
T ss_dssp EEEESTTSSSTTTCHHHHHHHHHH-HTTSSEEEEESS
T ss_pred EEECCCCCCCHHHHHHHHHHHHHH-cCCCcEEEecCC
Confidence 66444 57888888774 457899988874
No 359
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=39.55 E-value=1.3e+02 Score=31.95 Aligned_cols=73 Identities=16% Similarity=0.124 Sum_probs=50.0
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEcCCC----CCCCCCCHHHHHHHHHHHHhcCCCCEEEEeCCCCcCCccCHHHHHHHHhC
Q psy11975 525 TTRATIDLTQKAAKAGANAALILCPY----YFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHH 600 (786)
Q Consensus 525 ST~EAIELAr~Ae~aGADAVmViPPy----Y~kps~S~eeLv~YFraIAeAtdLPIiLYNiP~~TGv~LSpelL~rLAei 600 (786)
+..+..++++.++++|++.+++..=. |-.+ =.+.++++++.+++||+. .|---+.+.+.++.+.
T Consensus 144 ~~~~~~~~~~~l~~~G~~~iiv~~~~~~g~~~G~------d~~~i~~i~~~~~ipvia------sGGi~s~~D~~~l~~~ 211 (241)
T PRK14024 144 DGGDLWEVLERLDSAGCSRYVVTDVTKDGTLTGP------NLELLREVCARTDAPVVA------SGGVSSLDDLRALAEL 211 (241)
T ss_pred cCccHHHHHHHHHhcCCCEEEEEeecCCCCccCC------CHHHHHHHHhhCCCCEEE------eCCCCCHHHHHHHhhh
Confidence 33577889999999999999888632 2112 167778888888899876 3445678888887642
Q ss_pred --CCEEEEEeC
Q psy11975 601 --ENIRGVKDT 609 (786)
Q Consensus 601 --PNVVGIKDS 609 (786)
.++-|+=-.
T Consensus 212 ~~~GvdgV~ig 222 (241)
T PRK14024 212 VPLGVEGAIVG 222 (241)
T ss_pred ccCCccEEEEe
Confidence 456655443
No 360
>PRK00507 deoxyribose-phosphate aldolase; Provisional
Probab=39.55 E-value=2.6e+02 Score=29.71 Aligned_cols=121 Identities=14% Similarity=0.008 Sum_probs=75.8
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHhcCCCCEEEEeCCCCcCCccCHHHHHHHHh-
Q psy11975 521 QKHTTTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAH- 599 (786)
Q Consensus 521 VGa~ST~EAIELAr~Ae~aGADAVmViPPyY~kps~S~eeLv~YFraIAeAtdLPIiLYNiP~~TGv~LSpelL~rLAe- 599 (786)
.|.+.++.-+..++.|.+.|||-+=++.++-...+-..+.+.+-.++|.+++ -|+++-=+=. -..|+.+.+.++++
T Consensus 68 ~G~~~~~~K~~e~~~Ai~~GA~EiD~Vin~~~~~~g~~~~v~~ei~~v~~~~-~~~~lKvIlE--t~~L~~e~i~~a~~~ 144 (221)
T PRK00507 68 LGANTTAVKAFEAKDAIANGADEIDMVINIGALKSGDWDAVEADIRAVVEAA-GGAVLKVIIE--TCLLTDEEKVKACEI 144 (221)
T ss_pred CCCChHHHHHHHHHHHHHcCCceEeeeccHHHhcCCCHHHHHHHHHHHHHhc-CCceEEEEee--cCcCCHHHHHHHHHH
Confidence 3667788888999999999999998887764322214677777777777765 2333333100 12467777666653
Q ss_pred --CCCEEEEEeC--------CHHHHHHHHhhcCCCC--EEEEeCCcc--hhhhhhccCCc
Q psy11975 600 --HENIRGVKDT--------DNIKLANMANQTKDLN--FSVFAGSAG--YLLSGLLVGCA 645 (786)
Q Consensus 600 --iPNVVGIKDS--------Dl~ri~~ll~~~~~~d--f~Vf~G~De--lLL~aL~~GAd 645 (786)
.-++-.||-+ .+..++.+.+ ..+++ +..-.|-.. .++..+.+|++
T Consensus 145 ~~~agadfIKTsTG~~~~gat~~~v~~m~~-~~~~~~~IKasGGIrt~~~a~~~i~aGA~ 203 (221)
T PRK00507 145 AKEAGADFVKTSTGFSTGGATVEDVKLMRE-TVGPRVGVKASGGIRTLEDALAMIEAGAT 203 (221)
T ss_pred HHHhCCCEEEcCCCCCCCCCCHHHHHHHHH-HhCCCceEEeeCCcCCHHHHHHHHHcCcc
Confidence 3456688986 3555555544 34444 444555544 36677788886
No 361
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=39.31 E-value=2.3e+02 Score=32.20 Aligned_cols=69 Identities=7% Similarity=-0.062 Sum_probs=49.5
Q ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHhcCCC-CEEEEeCCCCcCCccCHHHHHHHH
Q psy11975 522 KHTTTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPI-PVIIYNNTFVTNIDISVDTLVKLA 598 (786)
Q Consensus 522 Ga~ST~EAIELAr~Ae~aGADAVmViPPyY~kps~S~eeLv~YFraIAeAtdL-PIiLYNiP~~TGv~LSpelL~rLA 598 (786)
+..+.+..+++++.+.++|||.|.+.--.-. .++.++.++++.|.+..+. ||- +|+ ..++...+..-|+
T Consensus 192 ~r~~~~~l~~~~~~~~~~Gad~I~l~DT~G~---a~P~~v~~lv~~l~~~~~~~~i~-~H~----Hnd~GlA~AN~lA 261 (347)
T PLN02746 192 GPVPPSKVAYVAKELYDMGCYEISLGDTIGV---GTPGTVVPMLEAVMAVVPVDKLA-VHF----HDTYGQALANILV 261 (347)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEecCCcCC---cCHHHHHHHHHHHHHhCCCCeEE-EEE----CCCCChHHHHHHH
Confidence 4457899999999999999999888775533 2489999999999988764 443 343 3344444444443
No 362
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=39.15 E-value=17 Score=39.15 Aligned_cols=45 Identities=16% Similarity=0.133 Sum_probs=29.4
Q ss_pred CCeEEE--eCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHH
Q psy11975 514 QADLLK--PQKHTTTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFI 566 (786)
Q Consensus 514 RVPVIa--GVGa~ST~EAIELAr~Ae~aGADAVmViPPyY~kps~S~eeLv~YFr 566 (786)
++|||+ |+|.. .+ |..|.++|+|||++-...--..+ +-.+-+-|+
T Consensus 182 ~VPviVDAGiG~p--Sd----Aa~aMElG~DaVL~NTAiA~A~D--Pv~MA~Af~ 228 (262)
T COG2022 182 DVPVIVDAGIGTP--SD----AAQAMELGADAVLLNTAIARAKD--PVAMARAFA 228 (262)
T ss_pred CCCEEEeCCCCCh--hH----HHHHHhcccceeehhhHhhccCC--hHHHHHHHH
Confidence 689998 66654 33 45688999999999876544332 444444333
No 363
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=39.03 E-value=1.2e+02 Score=32.20 Aligned_cols=49 Identities=16% Similarity=0.196 Sum_probs=23.2
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHhcCCCCE
Q psy11975 525 TTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPV 576 (786)
Q Consensus 525 ST~EAIELAr~Ae~aGADAVmViPPyY~kps~S~eeLv~YFraIAeAtdLPI 576 (786)
+.+..+++++.+.++|+|.|.+.-..-. ++++++.++++.+.+..++||
T Consensus 137 ~~~~~~~~~~~~~~~G~~~i~l~DT~G~---~~P~~v~~lv~~l~~~~~~~l 185 (259)
T cd07939 137 DPDFLIEFAEVAQEAGADRLRFADTVGI---LDPFTTYELIRRLRAATDLPL 185 (259)
T ss_pred CHHHHHHHHHHHHHCCCCEEEeCCCCCC---CCHHHHHHHHHHHHHhcCCeE
Confidence 3555555555555555555444433221 124555555555554444443
No 364
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=38.90 E-value=1.4e+02 Score=32.30 Aligned_cols=55 Identities=13% Similarity=0.062 Sum_probs=43.1
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHhcCCCCEEE
Q psy11975 521 QKHTTTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVII 578 (786)
Q Consensus 521 VGa~ST~EAIELAr~Ae~aGADAVmViPPyY~kps~S~eeLv~YFraIAeAtdLPIiL 578 (786)
+.....++.+++++.+.++|+|.+.+.--.-. ++++++.++++.|-+..++||-+
T Consensus 135 a~r~~~~~l~~~~~~~~~~g~~~i~l~Dt~G~---~~P~~v~~~~~~~~~~~~~~i~~ 189 (262)
T cd07948 135 SFRSDLVDLLRVYRAVDKLGVNRVGIADTVGI---ATPRQVYELVRTLRGVVSCDIEF 189 (262)
T ss_pred eCCCCHHHHHHHHHHHHHcCCCEEEECCcCCC---CCHHHHHHHHHHHHHhcCCeEEE
Confidence 44556899999999999999998877765432 24899999999998887877643
No 365
>cd01294 DHOase Dihydroorotase (DHOase) catalyzes the reversible interconversion of carbamoyl aspartate to dihydroorotate, a key reaction in the pyrimidine biosynthesis. In contrast to the large polyfunctional CAD proteins of higher organisms, this group of DHOases is monofunctional and mainly dimeric.
Probab=38.76 E-value=3.5e+02 Score=29.72 Aligned_cols=85 Identities=12% Similarity=-0.032 Sum_probs=51.5
Q ss_pred EEEeCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHhcC-CCCEEE-EeC-CCCcCCccCHHH
Q psy11975 517 LLKPQKHTTTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNS-PIPVII-YNN-TFVTNIDISVDT 593 (786)
Q Consensus 517 VIaGVGa~ST~EAIELAr~Ae~aGADAVmViPPyY~kps~S~eeLv~YFraIAeAt-dLPIiL-YNi-P~~TGv~LSpel 593 (786)
+=+++... ++-...++.|.+.| +.++.+| ....+..+.+.+.++...++++. ..-++. +-+ |. .+ -..+.
T Consensus 9 ~h~h~~~~--~~~~~~~~aa~~gG-Ttvv~mp-nt~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~--~~~~e 81 (335)
T cd01294 9 MHLHLRDG--AMLKLVLPYTARGF-SRAIVMP-NLKPPVTTTADALAYRERILAADPGPNFTPLMTLYLT-EN--TTPEE 81 (335)
T ss_pred eEecCCCc--hHHHHHHHHHHhCC-CEEEECC-CCCCCCCCHHHHHHHHHHHHhcCCCCcEEEEEEEecc-CC--CCHHH
Confidence 33444442 55557788888889 8888876 33333224556788888888765 333442 122 22 11 13577
Q ss_pred HHHHHhCCCEEEEEe
Q psy11975 594 LVKLAHHENIRGVKD 608 (786)
Q Consensus 594 L~rLAeiPNVVGIKD 608 (786)
+.++.+...++|+|.
T Consensus 82 l~~~~~~~G~~g~Kl 96 (335)
T cd01294 82 LREAKKKGGIRGVKL 96 (335)
T ss_pred HHHHHHhCCceEEEE
Confidence 888876668999994
No 366
>cd06312 PBP1_ABC_sugar_binding_like_4 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=38.63 E-value=1.5e+02 Score=30.42 Aligned_cols=60 Identities=20% Similarity=0.228 Sum_probs=42.6
Q ss_pred CeEEEeCCCC-CHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHhcCCCCEEEEeCC
Q psy11975 515 ADLLKPQKHT-TTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNT 582 (786)
Q Consensus 515 VPVIaGVGa~-ST~EAIELAr~Ae~aGADAVmViPPyY~kps~S~eeLv~YFraIAeAtdLPIiLYNiP 582 (786)
..|++..... +....++..+.+...++|++++.+.. .+.+...++.+. ..++|+++.|.+
T Consensus 31 ~~v~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~-------~~~~~~~l~~~~-~~~ipvV~~~~~ 91 (271)
T cd06312 31 VDVEYRGPETFDVADMARLIEAAIAAKPDGIVVTIPD-------PDALDPAIKRAV-AAGIPVISFNAG 91 (271)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHhCCCEEEEeCCC-------hHHhHHHHHHHH-HCCCeEEEeCCC
Confidence 4566655555 78888889999988999999998632 233445555543 458999999865
No 367
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=38.47 E-value=38 Score=37.26 Aligned_cols=67 Identities=21% Similarity=0.255 Sum_probs=39.4
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHhcCCCCEEEEeCCCCcCCccCHHHHHHHH
Q psy11975 525 TTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLA 598 (786)
Q Consensus 525 ST~EAIELAr~Ae~aGADAVmViPPyY~kps~S~eeLv~YFraIAeAtdLPIiLYNiP~~TGv~LSpelL~rLA 598 (786)
+.++++++++..+++|++++.|-+=.--. ......=.+++..|.++.++||++ | |--.+.+.+.++.
T Consensus 136 ~~~~~~~~~~~l~~~G~~~i~vH~Rt~~q-~~~~~a~w~~i~~i~~~~~ipvi~-N-----GdI~s~~d~~~~~ 202 (309)
T PF01207_consen 136 SPEETIEFARILEDAGVSAITVHGRTRKQ-RYKGPADWEAIAEIKEALPIPVIA-N-----GDIFSPEDAERML 202 (309)
T ss_dssp -CHHHHHHHHHHHHTT--EEEEECS-TTC-CCTS---HHHHHHCHHC-TSEEEE-E-----SS--SHHHHHHHC
T ss_pred chhHHHHHHHHhhhcccceEEEecCchhh-cCCcccchHHHHHHhhcccceeEE-c-----CccCCHHHHHHHH
Confidence 57889999999999999999998721100 001223467788888888887654 3 4345566555553
No 368
>PRK06959 putative threonine-phosphate decarboxylase; Provisional
Probab=38.46 E-value=1.1e+02 Score=33.68 Aligned_cols=82 Identities=12% Similarity=0.066 Sum_probs=49.6
Q ss_pred eEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHH-----------HHHHhcCCCCEEEEeCCCC
Q psy11975 516 DLLKPQKHTTTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHF-----------ISVADNSPIPVIIYNNTFV 584 (786)
Q Consensus 516 PVIaGVGa~ST~EAIELAr~Ae~aGADAVmViPPyY~kps~S~eeLv~YF-----------raIAeAtdLPIiLYNiP~~ 584 (786)
-|+++.|+ .+++.++..+.+- +.+++..|.|.... ...+.+ ..+.+ .+.++++.+|..
T Consensus 73 ~I~i~~Gs---~e~i~~l~~~~~~--g~v~v~~P~y~~y~----~~~~~~g~~~~~v~~~~~~~~~--~~~~v~l~nPnN 141 (339)
T PRK06959 73 HVLPVAGS---QAAIRALPALLPR--GRVGIAPLAYSEYA----PAFARHGHRVVPLDEAADTLPA--ALTHLIVVNPNN 141 (339)
T ss_pred cEEECcCH---HHHHHHHHHhcCC--CeEEEcCCCcHHHH----HHHHHCCCEEEeecccchhccc--cCCEEEEeCCCC
Confidence 37777766 5777766554333 34777778774321 011100 11111 245889999975
Q ss_pred -cCCccCHHHHHHHHh----CCCEEEEEeC
Q psy11975 585 -TNIDISVDTLVKLAH----HENIRGVKDT 609 (786)
Q Consensus 585 -TGv~LSpelL~rLAe----iPNVVGIKDS 609 (786)
||..++.+.+.+|++ ...++ |=|+
T Consensus 142 PTG~~~s~~~l~~l~~~~~~~~~~v-I~DE 170 (339)
T PRK06959 142 PTAERLPAARLLRWHAQLAARGGTL-IVDE 170 (339)
T ss_pred CCCCCCCHHHHHHHHHHHHHcCCEE-EEEC
Confidence 899999999999863 33444 5577
No 369
>PRK09517 multifunctional thiamine-phosphate pyrophosphorylase/synthase/phosphomethylpyrimidine kinase; Provisional
Probab=38.41 E-value=2.3e+02 Score=35.23 Aligned_cols=84 Identities=12% Similarity=0.006 Sum_probs=52.3
Q ss_pred EEEeCCCCCHHHHHHHHHHHHHc---CCCEEEEcCCCC--CCCCCCHHHHHHHHHHHHhcCC---CCEEEEeCCCCcCCc
Q psy11975 517 LLKPQKHTTTRATIDLTQKAAKA---GANAALILCPYY--FQKKMTEDLIYEHFISVADNSP---IPVIIYNNTFVTNID 588 (786)
Q Consensus 517 VIaGVGa~ST~EAIELAr~Ae~a---GADAVmViPPyY--~kps~S~eeLv~YFraIAeAtd---LPIiLYNiP~~TGv~ 588 (786)
.++|+++.+.+|+.+..+.+..+ |||.+.+.|-+- .|++...--=.+.++.+++.+. +||+..= .
T Consensus 102 ~~iG~S~h~~~e~~~~~~~~~~~g~~gaDYi~~Gpvf~T~tK~~~~~~lG~~~l~~~~~~~~~~~iPv~AiG-------G 174 (755)
T PRK09517 102 LELGLTIETLDQLEAVIAQCAETGVALPDVIGIGPVASTATKPDAPPALGVDGIAEIAAVAQDHGIASVAIG-------G 174 (755)
T ss_pred CEEEEeCCCHHHHHHHHhhhccCCCCCCCEEEECCccccCCCCCCCCCCCHHHHHHHHHhcCcCCCCEEEEC-------C
Confidence 47799999999876554445544 599999986432 1222000001356677776665 8988752 3
Q ss_pred cCHHHHHHHHh--CCCEEEEE
Q psy11975 589 ISVDTLVKLAH--HENIRGVK 607 (786)
Q Consensus 589 LSpelL~rLAe--iPNVVGIK 607 (786)
|+++.+.++.+ ...|..+=
T Consensus 175 I~~~~~~~~~~~Ga~giAvis 195 (755)
T PRK09517 175 VGLRNAAELAATGIDGLCVVS 195 (755)
T ss_pred CCHHHHHHHHHcCCCEEEEeh
Confidence 67889988875 34454443
No 370
>cd01979 Pchlide_reductase_N Pchlide_reductase_N: N protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=38.40 E-value=1.2e+02 Score=34.51 Aligned_cols=106 Identities=8% Similarity=0.016 Sum_probs=59.2
Q ss_pred EEEeCC-CCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHhcCCCCEEEEeCCCCcCCccC--HHH
Q psy11975 517 LLKPQK-HTTTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDIS--VDT 593 (786)
Q Consensus 517 VIaGVG-a~ST~EAIELAr~Ae~aGADAVmViPPyY~kps~S~eeLv~YFraIAeAtdLPIiLYNiP~~TGv~LS--pel 593 (786)
|+.|-+ ...++++|+.+..-.+ .++|.|..-.-... --|++..-.+++-+..++||+..+.|+..|.... ...
T Consensus 65 vv~g~gg~~~L~~aI~ei~~~~~--P~~I~V~sTCv~e~--IGDDi~~v~~~~~~~~~~pvi~v~t~gf~g~~~~G~~~~ 140 (396)
T cd01979 65 LSALLNDYAELDRVVTQIKRDRN--PSVIFLIGSCTTEV--IKMDLEGAAPRLSAEIGVPILVASASGLDYTFTQGEDTV 140 (396)
T ss_pred hhhccCchHHHHHHHHHHHHhcC--CCEEEEECCCHHHH--HhcCHHHHHHHHhhcCCCcEEEeeCCCccccHHHHHHHH
Confidence 444443 5567777776665544 67777765332111 1344555555555556899999999987662111 122
Q ss_pred HHHHHh-------CC---CEEEEEeC-CHHHHHHHHhhcCCCCEE
Q psy11975 594 LVKLAH-------HE---NIRGVKDT-DNIKLANMANQTKDLNFS 627 (786)
Q Consensus 594 L~rLAe-------iP---NVVGIKDS-Dl~ri~~ll~~~~~~df~ 627 (786)
+..|++ .+ |++|.... |+..+.+++++ .+=++.
T Consensus 141 ~~alv~~~~~~~~~~~~VnliG~~~~~d~~el~~lL~~-~Gi~v~ 184 (396)
T cd01979 141 LAALVPRCPEKPSPERSLVLVGSLPDIVEDQLRRELEQ-LGIPVV 184 (396)
T ss_pred HHHHhhhcccccCCCCceEEEEeCCcchHHHHHHHHHH-cCCeEE
Confidence 333321 11 67777444 77888888873 344443
No 371
>PRK08354 putative aminotransferase; Provisional
Probab=38.38 E-value=1.4e+02 Score=32.07 Aligned_cols=116 Identities=16% Similarity=0.102 Sum_probs=66.7
Q ss_pred eEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCC--------------CCHHHHHHHHHHHHhcCCCCEEEEeC
Q psy11975 516 DLLKPQKHTTTRATIDLTQKAAKAGANAALILCPYYFQKK--------------MTEDLIYEHFISVADNSPIPVIIYNN 581 (786)
Q Consensus 516 PVIaGVGa~ST~EAIELAr~Ae~aGADAVmViPPyY~kps--------------~S~eeLv~YFraIAeAtdLPIiLYNi 581 (786)
.|+++.|+ .+++.++-.+..-| |.|++..|.|.... ++. +.+++..+ +..++++++
T Consensus 56 ~I~vt~G~---~~al~~~~~~~~~g-d~vlv~~P~y~~~~~~~~~~g~~~~~~~~d~----~~l~~~~~--~~~~vi~~~ 125 (311)
T PRK08354 56 PIVITAGI---TEALYLIGILALRD-RKVIIPRHTYGEYERVARFFAARIIKGPNDP----EKLEELVE--RNSVVFFCN 125 (311)
T ss_pred CEEECCCH---HHHHHHHHHhhCCC-CeEEEeCCCcHHHHHHHHHcCCEEeecCCCH----HHHHHhhc--CCCEEEEec
Confidence 47776665 66776665544444 78888889874321 011 22333322 356889998
Q ss_pred CCC-cCCccCHHHHHHHHhC---CCEEEEEeC---CHHHHHHHHhhcCCCCEEEEeCCcchh-hhhhccCC
Q psy11975 582 TFV-TNIDISVDTLVKLAHH---ENIRGVKDT---DNIKLANMANQTKDLNFSVFAGSAGYL-LSGLLVGC 644 (786)
Q Consensus 582 P~~-TGv~LSpelL~rLAei---PNVVGIKDS---Dl~ri~~ll~~~~~~df~Vf~G~DelL-L~aL~~GA 644 (786)
|.. ||..++.+.+.+|+++ .++.=|=|+ ++..-... ...+++-++.+..-.+ +++++.|.
T Consensus 126 P~NPTG~~~~~~~l~~l~~~a~~~~~~li~De~y~~f~~~~~~---~~~~~vi~~~S~SK~~~l~GlRiG~ 193 (311)
T PRK08354 126 PNNPDGKFYNFKELKPLLDAVEDRNALLILDEAFIDFVKKPES---PEGENIIKLRTFTKSYGLPGIRVGY 193 (311)
T ss_pred CCCCCCCccCHHHHHHHHHHhhhcCcEEEEeCcchhccccccc---cCCCcEEEEeccHhhcCCccceeee
Confidence 875 8999999999998742 456666666 32110011 1133444445444433 46777763
No 372
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=38.33 E-value=1.5e+02 Score=33.41 Aligned_cols=28 Identities=18% Similarity=0.177 Sum_probs=22.3
Q ss_pred CCeEEEe-CCCCCHHHHHHHHHHHHHcCCCEEEEc
Q psy11975 514 QADLLKP-QKHTTTRATIDLTQKAAKAGANAALIL 547 (786)
Q Consensus 514 RVPVIaG-VGa~ST~EAIELAr~Ae~aGADAVmVi 547 (786)
.++||+| |+ +.+.++++.++|||++.+-
T Consensus 140 ~~~vi~g~V~------t~e~a~~l~~aGad~i~vg 168 (326)
T PRK05458 140 ETFVIAGNVG------TPEAVRELENAGADATKVG 168 (326)
T ss_pred CCeEEEEecC------CHHHHHHHHHcCcCEEEEC
Confidence 4789997 76 4667788889999998765
No 373
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=38.32 E-value=3e+02 Score=29.04 Aligned_cols=129 Identities=15% Similarity=0.005 Sum_probs=64.9
Q ss_pred CCeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHhcCCCCEEEEeCCCCcCCcc----
Q psy11975 514 QADLLKPQKHTTTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDI---- 589 (786)
Q Consensus 514 RVPVIaGVGa~ST~EAIELAr~Ae~aGADAVmViPPyY~kps~S~eeLv~YFraIAeAtdLPIiLYNiP~~TGv~L---- 589 (786)
++++-++.--.+... .++.+.++|||.+.+.. .. + .+.+.+..+.+ ...++-+.+==+|...--.+
T Consensus 65 ~~~lDvHLm~~~p~~---~i~~~~~~Gad~itvH~---ea-~--~~~~~~~l~~i-k~~G~~~gval~p~t~~e~l~~~l 134 (228)
T PTZ00170 65 NTFLDCHLMVSNPEK---WVDDFAKAGASQFTFHI---EA-T--EDDPKAVARKI-REAGMKVGVAIKPKTPVEVLFPLI 134 (228)
T ss_pred CCCEEEEECCCCHHH---HHHHHHHcCCCEEEEec---cC-C--chHHHHHHHHH-HHCCCeEEEEECCCCCHHHHHHHH
Confidence 456666666444444 44666778888776642 21 1 22233333333 23344344433354211111
Q ss_pred --C-HHHHHHHHhCCCEEEEEeC--CHHHHHHHHhhcCCCCEEEEeCCc-chhhhhhccCCcccccccc
Q psy11975 590 --S-VDTLVKLAHHENIRGVKDT--DNIKLANMANQTKDLNFSVFAGSA-GYLLSGLLVGCAGGINALS 652 (786)
Q Consensus 590 --S-pelL~rLAeiPNVVGIKDS--Dl~ri~~ll~~~~~~df~Vf~G~D-elLL~aL~~GAdG~Isg~a 652 (786)
+ .+.+.-+.-.|.+.|.|.. .+.++.++.+....-.+.|=.|-. +.+-....+|++.++.|.+
T Consensus 135 ~~~~vD~Vl~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~I~VdGGI~~~ti~~~~~aGad~iVvGsa 203 (228)
T PTZ00170 135 DTDLVDMVLVMTVEPGFGGQSFMHDMMPKVRELRKRYPHLNIQVDGGINLETIDIAADAGANVIVAGSS 203 (228)
T ss_pred ccchhhhHHhhhcccCCCCcEecHHHHHHHHHHHHhcccCeEEECCCCCHHHHHHHHHcCCCEEEEchH
Confidence 1 1122222335777788877 466766665421111233334444 3455677899999999865
No 374
>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain. LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.
Probab=38.27 E-value=1.5e+02 Score=34.06 Aligned_cols=29 Identities=14% Similarity=0.185 Sum_probs=21.6
Q ss_pred CCeEEE-eCCCCCHHHHHHHHHHHHHcCCCEEEEcC
Q psy11975 514 QADLLK-PQKHTTTRATIDLTQKAAKAGANAALILC 548 (786)
Q Consensus 514 RVPVIa-GVGa~ST~EAIELAr~Ae~aGADAVmViP 548 (786)
++|||+ || .+ .+-|+.|.++|||+|.|..
T Consensus 253 ~~pvivKgV--~~----~~dA~~a~~~G~d~I~vsn 282 (383)
T cd03332 253 DLPIVLKGI--LH----PDDARRAVEAGVDGVVVSN 282 (383)
T ss_pred CCCEEEecC--CC----HHHHHHHHHCCCCEEEEcC
Confidence 368888 56 23 4556688889999999984
No 375
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=38.12 E-value=1.1e+02 Score=33.25 Aligned_cols=58 Identities=10% Similarity=-0.124 Sum_probs=46.1
Q ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHhcC--CCCEEEE
Q psy11975 522 KHTTTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNS--PIPVIIY 579 (786)
Q Consensus 522 Ga~ST~EAIELAr~Ae~aGADAVmViPPyY~kps~S~eeLv~YFraIAeAt--dLPIiLY 579 (786)
+..+.+...+++++..+.|+|++++.--.---+.+|.+|-.+..+.+.+.+ .+||+.-
T Consensus 21 g~iD~~~l~~li~~l~~~Gv~gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~g~~pvi~g 80 (296)
T TIGR03249 21 GSFDEAAYRENIEWLLGYGLEALFAAGGTGEFFSLTPAEYEQVVEIAVSTAKGKVPVYTG 80 (296)
T ss_pred CCcCHHHHHHHHHHHHhcCCCEEEECCCCcCcccCCHHHHHHHHHHHHHHhCCCCcEEEe
Confidence 456788999999999999999999876543333356999999999888876 3888865
No 376
>PF04217 DUF412: Protein of unknown function, DUF412; InterPro: IPR007334 This family consists of bacterial uncharacterised proteins.
Probab=38.11 E-value=12 Score=37.35 Aligned_cols=31 Identities=35% Similarity=0.533 Sum_probs=25.9
Q ss_pred ccccCccCCCCccccCCCcHHHHHHHHhhcCC
Q psy11975 754 GYYGGRSRRPLPAALKPGGAEKIKQVLTEAGF 785 (786)
Q Consensus 754 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 (786)
=|||.|++.|||.+|.--.- .|+|-|.++|.
T Consensus 81 ~WLGkRa~tpLPp~l~~Wy~-ei~~Kl~~~g~ 111 (143)
T PF04217_consen 81 YWLGKRANTPLPPSLLSWYH-EIRQKLQEQGI 111 (143)
T ss_pred HHhhcccCCCCCHHHHHHHH-HHHHHHHHcCC
Confidence 38999999999999986654 48898988884
No 377
>PF04481 DUF561: Protein of unknown function (DUF561); InterPro: IPR007570 Protein in this entry are of unknown function and are found in cyanobacteria and the chloroplasts of algae. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=38.05 E-value=83 Score=33.91 Aligned_cols=34 Identities=12% Similarity=0.129 Sum_probs=31.4
Q ss_pred CeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEcC
Q psy11975 515 ADLLKPQKHTTTRATIDLTQKAAKAGANAALILC 548 (786)
Q Consensus 515 VPVIaGVGa~ST~EAIELAr~Ae~aGADAVmViP 548 (786)
++||.|....+.......++.|+..||+.|=+..
T Consensus 15 lKVIsGLnNFd~~~V~~i~~AA~~ggAt~vDIAa 48 (242)
T PF04481_consen 15 LKVISGLNNFDAESVAAIVKAAEIGGATFVDIAA 48 (242)
T ss_pred hhheeCccccCHHHHHHHHHHHHccCCceEEecC
Confidence 5899999999999999999999999999987764
No 378
>TIGR01232 lacD tagatose 1,6-diphosphate aldolase. This family consists of Gram-positive proteins. Tagatose 1,6-diphosphate aldolase is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=37.76 E-value=4.2e+02 Score=30.11 Aligned_cols=137 Identities=12% Similarity=0.150 Sum_probs=71.3
Q ss_pred HHHHHHcCCCEEEEcCCCCCCCCC---CHHHHHHHHHHHHhcC---CCCEEE----EeCC--CCcCCcc---CHHHHHHH
Q psy11975 533 TQKAAKAGANAALILCPYYFQKKM---TEDLIYEHFISVADNS---PIPVII----YNNT--FVTNIDI---SVDTLVKL 597 (786)
Q Consensus 533 Ar~Ae~aGADAVmViPPyY~kps~---S~eeLv~YFraIAeAt---dLPIiL----YNiP--~~TGv~L---SpelL~rL 597 (786)
+++.++.||||+=++- |+.|.. ..+.-.+|.++|.+.+ +||++| |+.. ...+..+ -|+.+.+.
T Consensus 112 ~~rike~GadavK~Ll--yy~pD~~~ein~~k~a~vervg~ec~a~dipf~lE~ltYd~~~~~~~~~~yak~kP~~V~~a 189 (325)
T TIGR01232 112 AKRLKEQGANAVKFLL--YYDVDDAEEINIQKKAYIERIGSECVAEDIPFFLEVLTYDDNIPDNGSVEFAKVKPRKVNEA 189 (325)
T ss_pred HHHHHHhCCCeEEEEE--EeCCCCChHHHHHHHHHHHHHHHHHHHCCCCeEEEEeccCCCCCCCCcHHHHHhChHHHHHH
Confidence 6788999999998873 667651 1222345666666554 898886 6533 2233322 25555554
Q ss_pred Hh-C--C--CEEEEEeC---CHH---------------HHHHHHh---hcCCCCEEEEeCC-cc-hhhh----hhccCC-
Q psy11975 598 AH-H--E--NIRGVKDT---DNI---------------KLANMAN---QTKDLNFSVFAGS-AG-YLLS----GLLVGC- 644 (786)
Q Consensus 598 Ae-i--P--NVVGIKDS---Dl~---------------ri~~ll~---~~~~~df~Vf~G~-De-lLL~----aL~~GA- 644 (786)
++ + | +|-=+|-+ ++. ...+..+ ...+-.+.++++. +. .+.. +..+|+
T Consensus 190 ~kefs~~~~gvDVlKvEvPvn~~~veG~~~~e~~yt~~eA~~~f~eq~~~~~~P~i~LSaGV~~~~F~~~l~~A~~aGa~ 269 (325)
T TIGR01232 190 MKLFSEPRFNVDVLKVEVPVNVKYVEGFAEGEVVYTKEEAAQHFKDQDAATHLPYIYLSAGVSAELFQETLKFAHEAGAK 269 (325)
T ss_pred HHHhccCCCCCcEEEEecccccccccccCcccccccHHHHHHHHHHHhhccCCCEEEEcCCCCHHHHHHHHHHHHHcCCC
Confidence 42 2 1 45555655 211 1111111 1223446666554 32 3333 445688
Q ss_pred -ccccccccccccHHHHHHHHHHHcCCHHHHHH
Q psy11975 645 -AGGINALSAVLGGPICELYDLAKAGKWEEAMK 676 (786)
Q Consensus 645 -dG~Isg~aN~~Pel~vaL~eA~~aGD~eeAre 676 (786)
.|+++|=+ .+..-.+.|...+.+.+++
T Consensus 270 fsGvL~GRA-----tW~~~v~~~~~~g~~~~~e 297 (325)
T TIGR01232 270 FNGVLCGRA-----TWSGAVQVYIEQGEDAARE 297 (325)
T ss_pred cceEEeehh-----hhHhhhhhhhcCCHHHHHH
Confidence 68888854 2333344444445444443
No 379
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=37.76 E-value=1.8e+02 Score=30.96 Aligned_cols=36 Identities=17% Similarity=0.005 Sum_probs=27.0
Q ss_pred CCeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCC
Q psy11975 514 QADLLKPQKHTTTRATIDLTQKAAKAGANAALILCPYYFQ 553 (786)
Q Consensus 514 RVPVIaGVGa~ST~EAIELAr~Ae~aGADAVmViPPyY~k 553 (786)
.+||++|-|-.+.+++.++. ++||++|++-...+..
T Consensus 74 ~~pv~~~GGi~s~~d~~~~~----~~Ga~~vivgt~~~~~ 109 (254)
T TIGR00735 74 FIPLTVGGGIKSIEDVDKLL----RAGADKVSINTAAVKN 109 (254)
T ss_pred CCCEEEECCCCCHHHHHHHH----HcCCCEEEEChhHhhC
Confidence 47899987777777766654 4699999998776644
No 380
>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=37.75 E-value=1.4e+02 Score=33.31 Aligned_cols=99 Identities=13% Similarity=0.125 Sum_probs=65.3
Q ss_pred cCCCCCCCHHHHHHHHHhCCCCCccCCCccccccCCCCCCCCCCCCCccccCCCCeEEE----eCCCCCHHHHHHHHHHH
Q psy11975 461 AHSSTSMPIQKRKSLLRKFPLWPELEPSTSELKRSDRPMSVGPRSVRPSEREWQADLLK----PQKHTTTRATIDLTQKA 536 (786)
Q Consensus 461 agE~~sLT~dER~~Lle~~~~wve~~a~~~e~~~~~~~~~~~~r~v~veevaGRVPVIa----GVGa~ST~EAIELAr~A 536 (786)
+|.+.-.+.+--.+++++ .+++ ++ ++||-| |.-... ..+.+.++.+
T Consensus 112 ~Ga~Ll~~p~lv~~iv~a---~~~a-------------------------v~-~iPVTVKiRlG~d~~~-~~~~~ia~~~ 161 (323)
T COG0042 112 AGAALLKNPELLAEIVKA---MVEA-------------------------VG-DIPVTVKIRLGWDDDD-ILALEIARIL 161 (323)
T ss_pred cchhhcCCHHHHHHHHHH---HHHh-------------------------hC-CCCeEEEEecccCccc-ccHHHHHHHH
Confidence 467778888888888888 4332 22 456654 443333 3688999999
Q ss_pred HHcCCCEEEEcCCC----CCCCCCCHHHHHHHHHHHHhcCC-CCEEEEeCCCCcCCccCHHHHHHHHhC
Q psy11975 537 AKAGANAALILCPY----YFQKKMTEDLIYEHFISVADNSP-IPVIIYNNTFVTNIDISVDTLVKLAHH 600 (786)
Q Consensus 537 e~aGADAVmViPPy----Y~kps~S~eeLv~YFraIAeAtd-LPIiLYNiP~~TGv~LSpelL~rLAei 600 (786)
+++||+++.|-.=- |..+ .-.++..+|.++++ +||+. .|--.+++...+..+.
T Consensus 162 ~~~g~~~ltVHgRtr~~~y~~~-----ad~~~I~~vk~~~~~ipvi~------NGdI~s~~~a~~~l~~ 219 (323)
T COG0042 162 EDAGADALTVHGRTRAQGYLGP-----ADWDYIKELKEAVPSIPVIA------NGDIKSLEDAKEMLEY 219 (323)
T ss_pred HhcCCCEEEEecccHHhcCCCc-----cCHHHHHHHHHhCCCCeEEe------CCCcCCHHHHHHHHHh
Confidence 99999999998632 2221 34677777887776 77764 2434566666666543
No 381
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=37.56 E-value=1.1e+02 Score=33.40 Aligned_cols=57 Identities=18% Similarity=0.029 Sum_probs=45.8
Q ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHhcC--CCCEEE
Q psy11975 522 KHTTTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNS--PIPVII 578 (786)
Q Consensus 522 Ga~ST~EAIELAr~Ae~aGADAVmViPPyY~kps~S~eeLv~YFraIAeAt--dLPIiL 578 (786)
+..+.+...+++++..+.|+|++++.--.--.+.++.+|-.+..+.+.+++ .+||+.
T Consensus 23 g~iD~~~l~~li~~l~~~Gv~Gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~~~~pvi~ 81 (303)
T PRK03620 23 GSFDEAAYREHLEWLAPYGAAALFAAGGTGEFFSLTPDEYSQVVRAAVETTAGRVPVIA 81 (303)
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCcEEE
Confidence 456788899999999999999999876443333356999999999998877 489886
No 382
>PF04412 DUF521: Protein of unknown function (DUF521); InterPro: IPR007506 This is a group of hypothetical proteins.
Probab=37.48 E-value=1.4e+02 Score=34.55 Aligned_cols=84 Identities=13% Similarity=0.184 Sum_probs=64.5
Q ss_pred ccCCCCeEEEeCCC-CCHHHHHHHHHHHHHcCCCEEEEcC---CC---CC--------CCCCCHHHHHHHHHHH--HhcC
Q psy11975 510 EREWQADLLKPQKH-TTTRATIDLTQKAAKAGANAALILC---PY---YF--------QKKMTEDLIYEHFISV--ADNS 572 (786)
Q Consensus 510 evaGRVPVIaGVGa-~ST~EAIELAr~Ae~aGADAVmViP---Py---Y~--------kps~S~eeLv~YFraI--AeAt 572 (786)
.++.++|||.|... .+.++...+...++..|+-+...+. |= +- .-.+++++|.+.++.+ ....
T Consensus 209 ~~~~~IPvi~g~~~~p~~d~lK~lgAA~Atsgs~~m~Hi~GvTPEa~~~~~a~~~~~e~i~i~~~dl~~~~~~l~~~~~~ 288 (400)
T PF04412_consen 209 KVGDRIPVITGLERRPSEDDLKALGAAMATSGSVAMFHIVGVTPEAPTLEAAFGGKAERITITDADLEEVYEELNTAGDE 288 (400)
T ss_pred hcCCCcCeEeCCCCCCCHHHHHHHhhhhhcccceeeEEEeCCCCCCCcchhhhcCCceEEEeCHHHHHHHHHHhccCCCC
Confidence 35669999999999 8899999998888888888776654 21 10 1124689999999999 3334
Q ss_pred CCCEEEEeCCCCcCCccCHHHHHHHH
Q psy11975 573 PIPVIIYNNTFVTNIDISVDTLVKLA 598 (786)
Q Consensus 573 dLPIiLYNiP~~TGv~LSpelL~rLA 598 (786)
++.+++--+|. +|.+.+.+|+
T Consensus 289 ~~D~V~lGcPH-----~S~~El~~ia 309 (400)
T PF04412_consen 289 KVDLVALGCPH-----LSLEELREIA 309 (400)
T ss_pred CCCEEEECCCC-----CCHHHHHHHH
Confidence 79999999996 6788888887
No 383
>PRK08185 hypothetical protein; Provisional
Probab=37.38 E-value=84 Score=34.64 Aligned_cols=85 Identities=12% Similarity=0.164 Sum_probs=64.1
Q ss_pred EEeCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHhcCCCCEEEEeCCCCcCCccCHHHHHHH
Q psy11975 518 LKPQKHTTTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKL 597 (786)
Q Consensus 518 IaGVGa~ST~EAIELAr~Ae~aGADAVmViPPyY~kps~S~eeLv~YFraIAeAtdLPIiLYNiP~~TGv~LSpelL~rL 597 (786)
|......+.+.+....+.|++.++..|+-+.|-..+.. ...+..+.+.+|+.+.+||.|.=- -| .+.+.+.+.
T Consensus 15 V~AfN~~n~e~~~avi~AAee~~sPvIl~~~~~~~~~~--~~~~~~~~~~~a~~~~vPV~lHLD---Hg--~~~e~i~~a 87 (283)
T PRK08185 15 VGAFNVADSCFLRAVVEEAEANNAPAIIAIHPNELDFL--GDNFFAYVRERAKRSPVPFVIHLD---HG--ATIEDVMRA 87 (283)
T ss_pred EEEEEeCCHHHHHHHHHHHHHhCCCEEEEeCcchhhhc--cHHHHHHHHHHHHHCCCCEEEECC---CC--CCHHHHHHH
Confidence 34455678899999999999999999999998766543 344999999999999999988753 12 257778777
Q ss_pred HhCC-CEEEEEeC
Q psy11975 598 AHHE-NIRGVKDT 609 (786)
Q Consensus 598 AeiP-NVVGIKDS 609 (786)
.+.+ +-+.+=.+
T Consensus 88 i~~Gf~SVM~D~S 100 (283)
T PRK08185 88 IRCGFTSVMIDGS 100 (283)
T ss_pred HHcCCCEEEEeCC
Confidence 7643 34555555
No 384
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=37.27 E-value=1.1e+02 Score=32.74 Aligned_cols=58 Identities=12% Similarity=0.076 Sum_probs=45.6
Q ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHhcCC--CCEEEE
Q psy11975 522 KHTTTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSP--IPVIIY 579 (786)
Q Consensus 522 Ga~ST~EAIELAr~Ae~aGADAVmViPPyY~kps~S~eeLv~YFraIAeAtd--LPIiLY 579 (786)
+..+.+...+++++..+.|++++++.--.-....+|.+|-.+..+.+++.+. +||+.-
T Consensus 16 g~iD~~~~~~~i~~l~~~Gv~gl~v~GstGE~~~lt~~Er~~l~~~~~~~~~~~~~vi~g 75 (284)
T cd00950 16 GSVDFDALERLIEFQIENGTDGLVVCGTTGESPTLSDEEHEAVIEAVVEAVNGRVPVIAG 75 (284)
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEECCCCcchhhCCHHHHHHHHHHHHHHhCCCCcEEec
Confidence 3578899999999999999999998865432333569999999999988873 777743
No 385
>PTZ00413 lipoate synthase; Provisional
Probab=37.12 E-value=1.8e+02 Score=33.76 Aligned_cols=29 Identities=14% Similarity=0.147 Sum_probs=18.9
Q ss_pred EEEeCCCCCHHHHHHHHHHHHHcCCCEEEE
Q psy11975 517 LLKPQKHTTTRATIDLTQKAAKAGANAALI 546 (786)
Q Consensus 517 VIaGVGa~ST~EAIELAr~Ae~aGADAVmV 546 (786)
+|+|.|. +.+|.+++++.+.++|+|-+-+
T Consensus 301 iIVGLGE-T~eEvie~m~dLrelGVDivtI 329 (398)
T PTZ00413 301 IMLGLGE-TEEEVRQTLRDLRTAGVSAVTL 329 (398)
T ss_pred eEecCCC-CHHHHHHHHHHHHHcCCcEEee
Confidence 5666443 6667777777777777776655
No 386
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=37.02 E-value=1.2e+02 Score=33.24 Aligned_cols=53 Identities=11% Similarity=0.001 Sum_probs=39.1
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHhcCC-CCEEE
Q psy11975 523 HTTTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSP-IPVII 578 (786)
Q Consensus 523 a~ST~EAIELAr~Ae~aGADAVmViPPyY~kps~S~eeLv~YFraIAeAtd-LPIiL 578 (786)
..+.+..+++++.+.++|||.|.+.--.-. +++.++.+.++.|.++.+ +||-+
T Consensus 151 ~~~~~~~~~~~~~~~~~G~d~i~l~DT~G~---~~P~~v~~lv~~l~~~~~~~~i~~ 204 (287)
T PRK05692 151 EVPPEAVADVAERLFALGCYEISLGDTIGV---GTPGQVRAVLEAVLAEFPAERLAG 204 (287)
T ss_pred CCCHHHHHHHHHHHHHcCCcEEEeccccCc---cCHHHHHHHHHHHHHhCCCCeEEE
Confidence 346788888889988899987777665432 247888888888887775 67654
No 387
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=36.99 E-value=6e+02 Score=27.88 Aligned_cols=112 Identities=13% Similarity=0.094 Sum_probs=65.8
Q ss_pred HHHHHHHHcCCCEEEEcCCCC-----CCCCCCHHHHHHHHHHHHhcC---CCCEEE-----EeCCCCcCCccCHHHHHHH
Q psy11975 531 DLTQKAAKAGANAALILCPYY-----FQKKMTEDLIYEHFISVADNS---PIPVII-----YNNTFVTNIDISVDTLVKL 597 (786)
Q Consensus 531 ELAr~Ae~aGADAVmViPPyY-----~kps~S~eeLv~YFraIAeAt---dLPIiL-----YNiP~~TGv~LSpelL~rL 597 (786)
+-.+.|.++|+|.|.+..|.- .+...+.++.++-++++.+.+ ++-+.. +.+|. .| ..+++.+.++
T Consensus 83 ~~ie~A~~~g~~~v~i~~~~s~~~~~~n~~~~~~e~l~~~~~~v~~ak~~g~~v~~~i~~~~~~~~-~~-~~~~~~~~~~ 160 (287)
T PRK05692 83 KGLEAALAAGADEVAVFASASEAFSQKNINCSIAESLERFEPVAEAAKQAGVRVRGYVSCVLGCPY-EG-EVPPEAVADV 160 (287)
T ss_pred HHHHHHHHcCCCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEEEEecCCC-CC-CCCHHHHHHH
Confidence 334677788999998886652 122234666665555555544 555532 34453 23 4678888777
Q ss_pred Hh----C-CCEEEEEeC----CHHHHHHHHhh---cCC-CCEEEEeCCcch------hhhhhccCCc
Q psy11975 598 AH----H-ENIRGVKDT----DNIKLANMANQ---TKD-LNFSVFAGSAGY------LLSGLLVGCA 645 (786)
Q Consensus 598 Ae----i-PNVVGIKDS----Dl~ri~~ll~~---~~~-~df~Vf~G~Del------LL~aL~~GAd 645 (786)
++ . ...+.|||+ .+.++.++++. ..+ -.+. +-+++.. .+.++.+|++
T Consensus 161 ~~~~~~~G~d~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~i~-~H~Hn~~Gla~AN~laA~~aG~~ 226 (287)
T PRK05692 161 AERLFALGCYEISLGDTIGVGTPGQVRAVLEAVLAEFPAERLA-GHFHDTYGQALANIYASLEEGIT 226 (287)
T ss_pred HHHHHHcCCcEEEeccccCccCHHHHHHHHHHHHHhCCCCeEE-EEecCCCCcHHHHHHHHHHhCCC
Confidence 63 3 579999999 66666655542 222 2344 4445432 3457778874
No 388
>PLN03033 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=36.96 E-value=4.8e+02 Score=29.21 Aligned_cols=101 Identities=14% Similarity=0.085 Sum_probs=69.4
Q ss_pred CCeEEEeCC-CCCHHHHHHHHHHHHHc----CCCEEEE--------cCCCCCCCCCCHHHHHHHHHHHHhcCCCCEE---
Q psy11975 514 QADLLKPQK-HTTTRATIDLTQKAAKA----GANAALI--------LCPYYFQKKMTEDLIYEHFISVADNSPIPVI--- 577 (786)
Q Consensus 514 RVPVIaGVG-a~ST~EAIELAr~Ae~a----GADAVmV--------iPPyY~kps~S~eeLv~YFraIAeAtdLPIi--- 577 (786)
.+-||+|=. -.+-+.+++.|+..+++ |+..+-= +.|+-|.-- -.++=++++++|.+.+++||+
T Consensus 16 ~~~lIAGPC~iEs~e~~~~~A~~lk~~~~~~g~~~i~kgsfkKApRTSp~sFrG~-G~eeGL~iL~~vk~~~glpvvTeV 94 (290)
T PLN03033 16 PFFLLAGPNVIESEEHILRMAKHIKDISTKLGLPLVFKSSFDKANRTSSKSFRGP-GMAEGLKILEKVKVAYDLPIVTDV 94 (290)
T ss_pred CeEEEecCChhcCHHHHHHHHHHHHHHHHhCCCcEEEEeeccCCCCCCCCCCCCC-CHHHHHHHHHHHHHHHCCceEEee
Confidence 345777644 46777788888888886 7765532 335555431 257778999999999999987
Q ss_pred --------------EEeCCCCcCCccCHHHHHHHHhCCCEEEEEeC---CHHHHHHH
Q psy11975 578 --------------IYNNTFVTNIDISVDTLVKLAHHENIRGVKDT---DNIKLANM 617 (786)
Q Consensus 578 --------------LYNiP~~TGv~LSpelL~rLAeiPNVVGIKDS---Dl~ri~~l 617 (786)
+..+|.+.-.+ .++|.++++....|-||-. ++..+...
T Consensus 95 ~~~~q~~~vae~~DilQIgAr~~rq--tdLL~a~~~tgkpV~lKkGq~~t~~e~~~a 149 (290)
T PLN03033 95 HESSQCEAVGKVADIIQIPAFLCRQ--TDLLVAAAKTGKIINIKKGQFCAPSVMRNS 149 (290)
T ss_pred CCHHHHHHHHhhCcEEeeCcHHHHH--HHHHHHHHccCCeEEeCCCCCCCHHHHHHH
Confidence 34556553322 5778888889999999998 55554433
No 389
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=36.94 E-value=3.1e+02 Score=29.31 Aligned_cols=114 Identities=11% Similarity=0.086 Sum_probs=70.3
Q ss_pred eEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHhcCCCCEEEEeCCCCcCCccCHHHHH
Q psy11975 516 DLLKPQKHTTTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLV 595 (786)
Q Consensus 516 PVIaGVGa~ST~EAIELAr~Ae~aGADAVmViPPyY~kps~S~eeLv~YFraIAeAtdLPIiLYNiP~~TGv~LSpelL~ 595 (786)
|||+=+-..+.++++.+++...+.|.+++=+. |..+. -.+-.+++++..+ -+++ -.|.-|+++++.
T Consensus 14 ~vI~Vlr~~~~e~a~~~a~Ali~gGi~~IEIT---l~sp~-----a~e~I~~l~~~~p-~~lI-----GAGTVL~~~q~~ 79 (211)
T COG0800 14 PVVPVIRGDDVEEALPLAKALIEGGIPAIEIT---LRTPA-----ALEAIRALAKEFP-EALI-----GAGTVLNPEQAR 79 (211)
T ss_pred CeeEEEEeCCHHHHHHHHHHHHHcCCCeEEEe---cCCCC-----HHHHHHHHHHhCc-ccEE-----ccccccCHHHHH
Confidence 45555557889999999999999999999987 44443 3444555555544 2222 368889999998
Q ss_pred HHHhCCCEEEEEeC-CHHHHHHHHhhcCCCCEEEEeCCcc--hhhhhhccCCccc
Q psy11975 596 KLAHHENIRGVKDT-DNIKLANMANQTKDLNFSVFAGSAG--YLLSGLLVGCAGG 647 (786)
Q Consensus 596 rLAeiPNVVGIKDS-Dl~ri~~ll~~~~~~df~Vf~G~De--lLL~aL~~GAdG~ 647 (786)
++.+-..-.-+=-. +.+-++.+.+ .++.++-|--. -+..++.+|++.+
T Consensus 80 ~a~~aGa~fiVsP~~~~ev~~~a~~----~~ip~~PG~~TptEi~~Ale~G~~~l 130 (211)
T COG0800 80 QAIAAGAQFIVSPGLNPEVAKAANR----YGIPYIPGVATPTEIMAALELGASAL 130 (211)
T ss_pred HHHHcCCCEEECCCCCHHHHHHHHh----CCCcccCCCCCHHHHHHHHHcChhhe
Confidence 88754322222222 4444444433 35666666543 2555666776543
No 390
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=36.81 E-value=1.1e+02 Score=33.69 Aligned_cols=59 Identities=15% Similarity=0.184 Sum_probs=47.0
Q ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHhcC--CCCEEEEe
Q psy11975 522 KHTTTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNS--PIPVIIYN 580 (786)
Q Consensus 522 Ga~ST~EAIELAr~Ae~aGADAVmViPPyY~kps~S~eeLv~YFraIAeAt--dLPIiLYN 580 (786)
|..+.+...+++++..+.|++++++.--.--.+.++.+|-.+..+.+.+.+ .+|||+--
T Consensus 24 g~iD~~~l~~lv~~li~~Gv~Gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~grvpvi~Gv 84 (309)
T cd00952 24 DTVDLDETARLVERLIAAGVDGILTMGTFGECATLTWEEKQAFVATVVETVAGRVPVFVGA 84 (309)
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEECcccccchhCCHHHHHHHHHHHHHHhCCCCCEEEEe
Confidence 456788889999999999999999876543334467999999999888877 38888654
No 391
>PRK14476 nitrogenase molybdenum-cofactor biosynthesis protein NifN; Provisional
Probab=36.75 E-value=1.2e+02 Score=35.38 Aligned_cols=107 Identities=12% Similarity=0.056 Sum_probs=60.8
Q ss_pred EEEeCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHhcC----CCCEEEEeCCCCcCC-----
Q psy11975 517 LLKPQKHTTTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNS----PIPVIIYNNTFVTNI----- 587 (786)
Q Consensus 517 VIaGVGa~ST~EAIELAr~Ae~aGADAVmViPPyY~kps~S~eeLv~YFraIAeAt----dLPIiLYNiP~~TGv----- 587 (786)
+|.| +...+.++|+.+..- ...++|+|+...-... --|++....+++-+.. ++||+.-+.|+..|.
T Consensus 72 ~VfG-g~~~L~~aI~~~~~~--~~P~~I~V~ttC~~ei--IGDDi~~v~~~~~~~~p~~~~~pvi~v~tpgF~g~~~~G~ 146 (455)
T PRK14476 72 TILG-GDENVEEAILNICKK--AKPKIIGLCTTGLTET--RGDDVAGALKEIRARHPELADTPIVYVSTPDFKGALEDGW 146 (455)
T ss_pred eEeC-CHHHHHHHHHHHHHh--hCCCEEEEeCcchHhh--hhccHHHHHHHHHhhccccCCCeEEEecCCCCCCcHHHHH
Confidence 5667 446788888776443 3578888876543211 1234444444444443 689999999997653
Q ss_pred ccCHHHHH-HHHhC----------CCEEEEE-eC--CHHHHHHHHhhcCCCCEEEE
Q psy11975 588 DISVDTLV-KLAHH----------ENIRGVK-DT--DNIKLANMANQTKDLNFSVF 629 (786)
Q Consensus 588 ~LSpelL~-rLAei----------PNVVGIK-DS--Dl~ri~~ll~~~~~~df~Vf 629 (786)
......+. .++.- =||+|-. .. |+..+.++++ ..+=++.++
T Consensus 147 ~~a~~al~~~~~~~~~~~~~~~~~VNiIgg~~~~~~D~~elk~lL~-~~Gl~v~~l 201 (455)
T PRK14476 147 AAAVEAIVEALVPPASSTGRRPRQVNVLPGSHLTPGDIEELREIIE-AFGLEPIIL 201 (455)
T ss_pred HHHHHHHHHHhcccccCCCCCCCcEEEECCCCCCcccHHHHHHHHH-HcCCceEEe
Confidence 22222222 23221 2566433 33 8899999887 345455444
No 392
>PRK15408 autoinducer 2-binding protein lsrB; Provisional
Probab=36.63 E-value=1.4e+02 Score=32.99 Aligned_cols=60 Identities=12% Similarity=0.206 Sum_probs=44.6
Q ss_pred CeEEE-eCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHhcCCCCEEEEeCC
Q psy11975 515 ADLLK-PQKHTTTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNT 582 (786)
Q Consensus 515 VPVIa-GVGa~ST~EAIELAr~Ae~aGADAVmViPPyY~kps~S~eeLv~YFraIAeAtdLPIiLYNiP 582 (786)
+.|+. +....+.+..+++.+.+.+.|+|+|++.|. +.+.+....+++ ...++||+.+|..
T Consensus 54 ~~v~~~~~~~~d~~~q~~~i~~li~~~vdgIiv~~~-------d~~al~~~l~~a-~~~gIpVV~~d~~ 114 (336)
T PRK15408 54 VDVTYDGPTEPSVSGQVQLINNFVNQGYNAIIVSAV-------SPDGLCPALKRA-MQRGVKVLTWDSD 114 (336)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHcCCCEEEEecC-------CHHHHHHHHHHH-HHCCCeEEEeCCC
Confidence 45655 555567777888999999999999999742 255566777664 4558999999975
No 393
>COG3684 LacD Tagatose-1,6-bisphosphate aldolase [Carbohydrate transport and metabolism]
Probab=36.45 E-value=2e+02 Score=31.90 Aligned_cols=116 Identities=10% Similarity=0.204 Sum_probs=0.0
Q ss_pred HHHHHHcCCCEEEEcCCCCCCCCCC--HHHHHHHHHHHHhcC---CCCEEE----EeCCCCcC---CccCHHHHHHHHhC
Q psy11975 533 TQKAAKAGANAALILCPYYFQKKMT--EDLIYEHFISVADNS---PIPVII----YNNTFVTN---IDISVDTLVKLAHH 600 (786)
Q Consensus 533 Ar~Ae~aGADAVmViPPyY~kps~S--~eeLv~YFraIAeAt---dLPIiL----YNiP~~TG---v~LSpelL~rLAei 600 (786)
|++.++.|++|+=++ .|+..+.+ .++=.+|.+++.+.+ +||++| |+--.... ....|..+.+-+++
T Consensus 117 a~riK~~G~~avK~L--vy~~~D~~e~neqk~a~ierigsec~aedi~f~lE~ltyd~~~~d~~eyak~kp~kV~~a~k~ 194 (306)
T COG3684 117 AKRIKEDGGDAVKFL--VYYRSDEDEINEQKLAYIERIGSECHAEDLPFFLEPLTYDPRIGDKEEYAKRKPQKVIEAMKE 194 (306)
T ss_pred HHHHHHhcccceEEE--EEEcCCchHHhHHHHHHHHHHHHHhhhcCCceeEeeeecCCCCCChHHHHhhchHHHHHHHHH
Q ss_pred ---CCEEEEEeC-CH----------HHHHHHHhhcCCCCEEEEeCCcchhhh-----hhccCCcccccc
Q psy11975 601 ---ENIRGVKDT-DN----------IKLANMANQTKDLNFSVFAGSAGYLLS-----GLLVGCAGGINA 650 (786)
Q Consensus 601 ---PNVVGIKDS-Dl----------~ri~~ll~~~~~~df~Vf~G~DelLL~-----aL~~GAdG~Isg 650 (786)
+++-=+|-. .+ ..++++-....-|=+-+-.|.++-++. ++..|+.|+++|
T Consensus 195 fsd~GadvlKvevPvyveGe~~ea~~~f~~~~~~~~lP~i~LSAGV~~klF~~tv~fA~eaGAsGvL~G 263 (306)
T COG3684 195 FSDSGADVLKVEVPVYVEGEQEEAAAAFQRQNDHINLPWIYLSAGVSAKLFQRTVRFAMEAGASGVLAG 263 (306)
T ss_pred hccCCCceEEeecceeccCccHHHHHHHHHhhcCCCCCeEEEecCccHHHhHHHHHHHHHcCCceeEec
No 394
>PRK06801 hypothetical protein; Provisional
Probab=36.42 E-value=1.2e+02 Score=33.58 Aligned_cols=77 Identities=13% Similarity=0.115 Sum_probs=59.9
Q ss_pred EEeCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHhcCCCCEEEEeCCCCcCCccCHHHHHHH
Q psy11975 518 LKPQKHTTTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKL 597 (786)
Q Consensus 518 IaGVGa~ST~EAIELAr~Ae~aGADAVmViPPyY~kps~S~eeLv~YFraIAeAtdLPIiLYNiP~~TGv~LSpelL~rL 597 (786)
|......+.+.+....+.|++.++..|+-+.|-..+.. ..+.+..+.+.+|+.+.+||.|.-- -|. +.+.+.+.
T Consensus 20 V~Afn~~n~e~~~avi~AAe~~~~PvIl~~~~~~~~~~-~~~~~~~~~~~~a~~~~vpV~lHlD---H~~--~~e~i~~A 93 (286)
T PRK06801 20 LGAFNVLDSHFLRALFAAAKQERSPFIINIAEVHFKYI-SLESLVEAVKFEAARHDIPVVLNLD---HGL--HFEAVVRA 93 (286)
T ss_pred EEEEeeCCHHHHHHHHHHHHHHCCCEEEEeCcchhhcC-CHHHHHHHHHHHHHHCCCCEEEECC---CCC--CHHHHHHH
Confidence 34455668899999999999999999999988766543 4788999999999999999998753 232 35667666
Q ss_pred HhC
Q psy11975 598 AHH 600 (786)
Q Consensus 598 Aei 600 (786)
.+.
T Consensus 94 i~~ 96 (286)
T PRK06801 94 LRL 96 (286)
T ss_pred HHh
Confidence 653
No 395
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=36.33 E-value=1.2e+02 Score=33.62 Aligned_cols=37 Identities=14% Similarity=0.144 Sum_probs=29.4
Q ss_pred CCeEEEeCCCC-CHHHHHHHHHHHHHcCCCEEEEcCCC
Q psy11975 514 QADLLKPQKHT-TTRATIDLTQKAAKAGANAALILCPY 550 (786)
Q Consensus 514 RVPVIaGVGa~-ST~EAIELAr~Ae~aGADAVmViPPy 550 (786)
++||++=++.. +.++..++++.++++|||+|.+....
T Consensus 202 ~~Pv~vKl~~~~~~~~~~~ia~~l~~aGad~I~~~n~~ 239 (327)
T cd04738 202 KVPLLVKIAPDLSDEELEDIADVALEHGVDGIIATNTT 239 (327)
T ss_pred CCCeEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEECCc
Confidence 47898877643 34578999999999999999988743
No 396
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=36.19 E-value=57 Score=36.16 Aligned_cols=75 Identities=11% Similarity=0.235 Sum_probs=47.4
Q ss_pred CCCeEE-EeCCCC-CHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHhcCCCCEEEEeCCCCcCCccC
Q psy11975 513 WQADLL-KPQKHT-TTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDIS 590 (786)
Q Consensus 513 GRVPVI-aGVGa~-ST~EAIELAr~Ae~aGADAVmViPPyY~kps~S~eeLv~YFraIAeAtdLPIiLYNiP~~TGv~LS 590 (786)
+++||| +..|+. +.+++ ..+.++|||+|++..-.+...+ ++...+.|.+.... ||.|
T Consensus 196 ~~iPVV~fAiGGI~TPedA----a~~melGAdGVaVGSaI~ks~d--P~~~akafv~ai~~-------~~~~-------- 254 (287)
T TIGR00343 196 GKLPVVNFAAGGVATPADA----ALMMQLGADGVFVGSGIFKSSN--PEKLAKAIVEATTH-------YDNP-------- 254 (287)
T ss_pred CCCCEEEeccCCCCCHHHH----HHHHHcCCCEEEEhHHhhcCCC--HHHHHHHHHHHHHH-------cCCH--------
Confidence 479998 677877 44443 3344589999999987765444 66666666554443 6654
Q ss_pred HHHHHHHHh-C-CCEEEEEeC
Q psy11975 591 VDTLVKLAH-H-ENIRGVKDT 609 (786)
Q Consensus 591 pelL~rLAe-i-PNVVGIKDS 609 (786)
+.+++.++ + ...+|+-.+
T Consensus 255 -~~~~e~s~~~~~~m~g~~~~ 274 (287)
T TIGR00343 255 -EKLAEVSKDLGEAMKGISIS 274 (287)
T ss_pred -HHHHHHHccccccCCCCccc
Confidence 56777763 3 345555433
No 397
>cd06322 PBP1_ABC_sugar_binding_like_12 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=36.00 E-value=1.8e+02 Score=29.53 Aligned_cols=60 Identities=12% Similarity=0.098 Sum_probs=42.5
Q ss_pred CeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHhcCCCCEEEEeCC
Q psy11975 515 ADLLKPQKHTTTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNT 582 (786)
Q Consensus 515 VPVIaGVGa~ST~EAIELAr~Ae~aGADAVmViPPyY~kps~S~eeLv~YFraIAeAtdLPIiLYNiP 582 (786)
.-+++..+..+.+...+..+.+.+.++|++++.+.. .+...+.++.+ .+.++|++++|.+
T Consensus 30 ~~~~i~~~~~~~~~~~~~~~~~~~~~vdgiii~~~~-------~~~~~~~~~~~-~~~~ipvV~~~~~ 89 (267)
T cd06322 30 VNLIVSIANQDLNKQLSDVEDFITKKVDAIVLSPVD-------SKGIRAAIAKA-KKAGIPVITVDIA 89 (267)
T ss_pred CEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEcCCC-------hhhhHHHHHHH-HHCCCCEEEEccc
Confidence 456666666677778888888889999999998642 22233445554 4568999999864
No 398
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=35.97 E-value=96 Score=33.76 Aligned_cols=52 Identities=15% Similarity=0.123 Sum_probs=38.8
Q ss_pred CCeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHhc
Q psy11975 514 QADLLKPQKHTTTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADN 571 (786)
Q Consensus 514 RVPVIaGVGa~ST~EAIELAr~Ae~aGADAVmViPPyY~kps~S~eeLv~YFraIAeA 571 (786)
++|||++.|=.+.+| +..|.++|||+|++-.-..-..+ +..+.+.|..-.++
T Consensus 175 ~vpVI~egGI~tped----a~~AmelGAdgVlV~SAIt~a~d--P~~ma~af~~Av~a 226 (248)
T cd04728 175 DVPVIVDAGIGTPSD----AAQAMELGADAVLLNTAIAKAKD--PVAMARAFKLAVEA 226 (248)
T ss_pred CCcEEEeCCCCCHHH----HHHHHHcCCCEEEEChHhcCCCC--HHHHHHHHHHHHHH
Confidence 579999766655555 45677799999999988764343 88888888776654
No 399
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=35.72 E-value=1.2e+02 Score=33.04 Aligned_cols=57 Identities=14% Similarity=0.034 Sum_probs=45.9
Q ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHhcC--CCCEEE
Q psy11975 522 KHTTTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNS--PIPVII 578 (786)
Q Consensus 522 Ga~ST~EAIELAr~Ae~aGADAVmViPPyY~kps~S~eeLv~YFraIAeAt--dLPIiL 578 (786)
+..+.+...+++++..+.|++++++.--.--.+.+|.+|-.+.++.+.+++ .+||+.
T Consensus 16 g~iD~~~l~~lv~~~~~~Gv~gi~v~GstGE~~~Ls~~Er~~l~~~~~~~~~g~~pvi~ 74 (294)
T TIGR02313 16 GDIDEEALRELIEFQIEGGSHAISVGGTSGEPGSLTLEERKQAIENAIDQIAGRIPFAP 74 (294)
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhCCCCcEEE
Confidence 456889999999999999999999887544344467999999999888876 378874
No 400
>PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1.13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A.
Probab=35.69 E-value=60 Score=36.02 Aligned_cols=73 Identities=22% Similarity=0.191 Sum_probs=42.0
Q ss_pred CCeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCC-CHHHHHHHHHHHHhcCCCCEEEEeCCCCcCCccCHH
Q psy11975 514 QADLLKPQKHTTTRATIDLTQKAAKAGANAALILCPYYFQKKM-TEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVD 592 (786)
Q Consensus 514 RVPVIaGVGa~ST~EAIELAr~Ae~aGADAVmViPPyY~kps~-S~eeLv~YFraIAeAtdLPIiLYNiP~~TGv~LSpe 592 (786)
++.||.-|++ ++.|+.|+++|+|+|++.-+=--.-.- ..+.+...+.+|.+..++||+.= -|+ .+..
T Consensus 136 gi~v~~~v~s------~~~A~~a~~~G~D~iv~qG~eAGGH~g~~~~~~~~L~~~v~~~~~iPViaA-----GGI-~dg~ 203 (330)
T PF03060_consen 136 GIKVIPQVTS------VREARKAAKAGADAIVAQGPEAGGHRGFEVGSTFSLLPQVRDAVDIPVIAA-----GGI-ADGR 203 (330)
T ss_dssp T-EEEEEESS------HHHHHHHHHTT-SEEEEE-TTSSEE---SSG-HHHHHHHHHHH-SS-EEEE-----SS---SHH
T ss_pred CCccccccCC------HHHHHHhhhcCCCEEEEeccccCCCCCccccceeeHHHHHhhhcCCcEEEe-----cCc-CCHH
Confidence 4566666654 566788999999999999652211110 11258999999999999999862 343 4555
Q ss_pred HHHHHH
Q psy11975 593 TLVKLA 598 (786)
Q Consensus 593 lL~rLA 598 (786)
.++...
T Consensus 204 ~iaaal 209 (330)
T PF03060_consen 204 GIAAAL 209 (330)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 554443
No 401
>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain. LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.
Probab=35.66 E-value=6.1e+02 Score=29.31 Aligned_cols=23 Identities=26% Similarity=0.304 Sum_probs=20.9
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEc
Q psy11975 525 TTRATIDLTQKAAKAGANAALIL 547 (786)
Q Consensus 525 ST~EAIELAr~Ae~aGADAVmVi 547 (786)
+-+.+.++.++|+++|+.+++++
T Consensus 149 dr~~~~~ll~RA~~aG~~alvlT 171 (383)
T cd03332 149 DDDLTESLLRRAEKAGYRVLVVT 171 (383)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEe
Confidence 56788899999999999999998
No 402
>PRK00208 thiG thiazole synthase; Reviewed
Probab=35.56 E-value=1e+02 Score=33.67 Aligned_cols=52 Identities=13% Similarity=0.118 Sum_probs=38.5
Q ss_pred CCeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHhc
Q psy11975 514 QADLLKPQKHTTTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADN 571 (786)
Q Consensus 514 RVPVIaGVGa~ST~EAIELAr~Ae~aGADAVmViPPyY~kps~S~eeLv~YFraIAeA 571 (786)
++|||++.|=.+.+| ++.|.++|||+|++..-..-..+ +..+.+.|..-.++
T Consensus 175 ~vpVIveaGI~tped----a~~AmelGAdgVlV~SAItka~d--P~~ma~af~~Av~a 226 (250)
T PRK00208 175 DVPVIVDAGIGTPSD----AAQAMELGADAVLLNTAIAVAGD--PVAMARAFKLAVEA 226 (250)
T ss_pred CCeEEEeCCCCCHHH----HHHHHHcCCCEEEEChHhhCCCC--HHHHHHHHHHHHHH
Confidence 579999766655555 45677799999999987764343 88888888776554
No 403
>COG0099 RpsM Ribosomal protein S13 [Translation, ribosomal structure and biogenesis]
Probab=35.51 E-value=52 Score=32.15 Aligned_cols=67 Identities=19% Similarity=0.294 Sum_probs=51.8
Q ss_pred ccCHHHHHHHHHHcCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCCCccch--------hchhhhccccCccCCCCcc
Q psy11975 696 EMGVPGVRAAMELYGYYGGRSRRPLPAALKPGGAEKIKQVLTEAGFLVPGVR--------AAMELYGYYGGRSRRPLPA 766 (786)
Q Consensus 696 ~~~ia~lKaaL~lrGI~~G~vR~PL~~pLseeekaeL~~~L~~lGll~~~~~--------~~~~~~~~~~~~~~~~~~~ 766 (786)
+-+....+++++..|++.. .=+. .|+++|.+.|++++++.-+++-+++ ++|+|--|=|-|-|+-||-
T Consensus 24 GIG~~~a~~I~~~~gi~~~---~r~~-eLteeei~~ir~~i~~~~~vegDLr~~v~~dIkRl~~i~~YRGiRH~~GLpV 98 (121)
T COG0099 24 GIGRRRAKEICKKAGIDPD---KRVG-ELTEEEIERLRDAIQNKYLVEGDLRREVRMDIKRLMKIGCYRGIRHRRGLPV 98 (121)
T ss_pred cccHHHHHHHHHHcCCCHh---Hhhc-cCCHHHHHHHHHHHHhcCeehhHHHHHHHHHHHHHHHhhhhhhhhhhcCCCC
Confidence 3467889999999999632 2356 8899999999999997666554443 5677778888899998884
No 404
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=35.45 E-value=5.3e+02 Score=26.81 Aligned_cols=77 Identities=6% Similarity=0.037 Sum_probs=45.3
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEcCCCCCC--CCCCHHHHHHHHHHHHhcC-CCCEEEEeCCCCcCCccCHHHHHHHHhC
Q psy11975 524 TTTRATIDLTQKAAKAGANAALILCPYYFQ--KKMTEDLIYEHFISVADNS-PIPVIIYNNTFVTNIDISVDTLVKLAHH 600 (786)
Q Consensus 524 ~ST~EAIELAr~Ae~aGADAVmViPPyY~k--ps~S~eeLv~YFraIAeAt-dLPIiLYNiP~~TGv~LSpelL~rLAei 600 (786)
.++++.+++++...++|++.|=+..|--.+ |. .+...+..+.+.+.. ++++..-. +.| .+.+.++.+.
T Consensus 16 ~s~e~~~~i~~~L~~~GV~~IEvg~~~~~~~~p~--~~~~~~~i~~l~~~~~~~~~~~l~---~~~----~~~i~~a~~~ 86 (265)
T cd03174 16 FSTEDKLEIAEALDEAGVDSIEVGSGASPKAVPQ--MEDDWEVLRAIRKLVPNVKLQALV---RNR----EKGIERALEA 86 (265)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEeccCcCcccccc--CCCHHHHHHHHHhccCCcEEEEEc---cCc----hhhHHHHHhC
Confidence 489999999999999999999998765321 11 122334444444444 45553332 122 5566666654
Q ss_pred C-CEEEEEeC
Q psy11975 601 E-NIRGVKDT 609 (786)
Q Consensus 601 P-NVVGIKDS 609 (786)
. ..+.+=..
T Consensus 87 g~~~i~i~~~ 96 (265)
T cd03174 87 GVDEVRIFDS 96 (265)
T ss_pred CcCEEEEEEe
Confidence 2 34444433
No 405
>KOG2748|consensus
Probab=35.09 E-value=1.6e+02 Score=33.57 Aligned_cols=40 Identities=15% Similarity=-0.035 Sum_probs=24.1
Q ss_pred cccccccc-cCCccccccccCCCcceEEEEEeeeeeeeeee
Q psy11975 248 RTLSIQDK-EEPNVLLSRTMLGPVSRLCLKVTSRTLSIQTM 287 (786)
Q Consensus 248 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (786)
++.+.++. ...|.--++...-|.+.++.|.++..-.++.|
T Consensus 160 e~~~~~~~e~~~p~e~~~d~~~g~s~~~dk~~~~~g~~g~~ 200 (369)
T KOG2748|consen 160 ETLRPKKREKVQPSESSEDRVEGESKVEDKEAEGGGADGKM 200 (369)
T ss_pred ccccccccCCCCCCCccccccccccccccccccccCccccc
Confidence 44555554 44455555666667788888877755555544
No 406
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=34.85 E-value=1.3e+02 Score=32.61 Aligned_cols=57 Identities=7% Similarity=-0.037 Sum_probs=45.5
Q ss_pred CCCCHHHHHHHHHHHHHc-CCCEEEEcCCCCCCCCCCHHHHHHHHHHHHhcCC--CCEEE
Q psy11975 522 KHTTTRATIDLTQKAAKA-GANAALILCPYYFQKKMTEDLIYEHFISVADNSP--IPVII 578 (786)
Q Consensus 522 Ga~ST~EAIELAr~Ae~a-GADAVmViPPyY~kps~S~eeLv~YFraIAeAtd--LPIiL 578 (786)
+..+.+...+++++..+. |++++++.--.--.+.++.+|-.+.++.+.++++ +|||.
T Consensus 16 g~iD~~~~~~~i~~l~~~~Gv~gi~~~GstGE~~~Lt~~Er~~~~~~~~~~~~~~~~via 75 (288)
T cd00954 16 GEINEDVLRAIVDYLIEKQGVDGLYVNGSTGEGFLLSVEERKQIAEIVAEAAKGKVTLIA 75 (288)
T ss_pred CCCCHHHHHHHHHHHHhcCCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCeEEe
Confidence 457888999999999999 9999998875433344569999999998888773 67776
No 407
>PF00016 RuBisCO_large: Ribulose bisphosphate carboxylase large chain, catalytic domain; InterPro: IPR000685 Ribulose bisphosphate carboxylase (RuBisCO) [, ] catalyses the initial step in Calvin's reductive pentose phosphate cycle in plants as well as purple and green bacteria. It consists of a large catalytic unit and a small subunit of undetermined function. In plants, the large subunit is coded by the chloroplastic genome while the small subunit is encoded in the nuclear genome. Molecular activation of RuBisCO by CO2 involves the formation of a carbamate with the epsilon-amino group of a conserved lysine residue. This carbamate is stabilised by a magnesium ion. One of the ligands of the magnesium ion is an aspartic acid residue close to the active site lysine [].; GO: 0000287 magnesium ion binding, 0016984 ribulose-bisphosphate carboxylase activity, 0015977 carbon fixation, 0009536 plastid; PDB: 3AXM_A 1WDD_A 3AXK_A 1SVD_A 1RXO_B 1UPP_C 1UPM_R 1RCO_L 8RUC_G 1RCX_B ....
Probab=34.81 E-value=37 Score=37.84 Aligned_cols=39 Identities=23% Similarity=0.177 Sum_probs=30.8
Q ss_pred ccCCCCeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEcC
Q psy11975 510 EREWQADLLKPQKHTTTRATIDLTQKAAKAGANAALILC 548 (786)
Q Consensus 510 evaGRVPVIaGVGa~ST~EAIELAr~Ae~aGADAVmViP 548 (786)
+++.+.-..+++++.+.++.++.++.|+++|++++|+-+
T Consensus 78 eTG~~~ly~~NiT~~~~~em~~ra~~a~~~G~~~vmv~~ 116 (309)
T PF00016_consen 78 ETGEKKLYAANITADTPDEMIERAEYAKEAGANAVMVNV 116 (309)
T ss_dssp HHSS--EEEEEE-SSSHHHHHHHHHHHHHHTGSEEEEEH
T ss_pred ccceecceecccccccHHHHHHhhhhhhhhccchhhccc
Confidence 344455567799988899999999999999999999964
No 408
>PRK13384 delta-aminolevulinic acid dehydratase; Provisional
Probab=34.77 E-value=83 Score=35.37 Aligned_cols=50 Identities=10% Similarity=0.134 Sum_probs=38.0
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHhcCCCCEEEEeCC
Q psy11975 524 TTTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNT 582 (786)
Q Consensus 524 ~ST~EAIELAr~Ae~aGADAVmViPPyY~kps~S~eeLv~YFraIAeAtdLPIiLYNiP 582 (786)
.+..||++.+..=.+-|||.+||=|-.. -.+-.++|.+..++|+..||.-
T Consensus 226 ~n~~eAlre~~~D~~EGAD~lMVKPal~---------YLDIi~~~k~~~~lPvaaYqVS 275 (322)
T PRK13384 226 ANGRQALLEALLDEAEGADILMVKPGTP---------YLDVLSRLRQETHLPLAAYQVG 275 (322)
T ss_pred CCHHHHHHHHHhhHhhCCCEEEEcCCch---------HHHHHHHHHhccCCCEEEEEch
Confidence 3568888888888888999999987432 2455566777789999999953
No 409
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=34.69 E-value=1e+02 Score=34.24 Aligned_cols=37 Identities=14% Similarity=0.222 Sum_probs=30.1
Q ss_pred CCeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCC
Q psy11975 514 QADLLKPQKHTTTRATIDLTQKAAKAGANAALILCPYY 551 (786)
Q Consensus 514 RVPVIaGVGa~ST~EAIELAr~Ae~aGADAVmViPPyY 551 (786)
++||++=++- ...+..+.++.++++|||++.+..-.+
T Consensus 163 ~iPv~vKl~p-~~~~~~~~a~~l~~~Gadgi~~~nt~~ 199 (325)
T cd04739 163 TIPVAVKLSP-FFSALAHMAKQLDAAGADGLVLFNRFY 199 (325)
T ss_pred CCCEEEEcCC-CccCHHHHHHHHHHcCCCeEEEEcCcC
Confidence 4799997664 345889999999999999999987643
No 410
>KOG0258|consensus
Probab=34.58 E-value=8.3e+02 Score=28.83 Aligned_cols=128 Identities=13% Similarity=-0.028 Sum_probs=82.8
Q ss_pred CCCEEEEcCCCCCCC----------------------CCCHHHHHHHHHHHHhcCCCCEEEEeCCCC-cCCccCHHHHHH
Q psy11975 540 GANAALILCPYYFQK----------------------KMTEDLIYEHFISVADNSPIPVIIYNNTFV-TNIDISVDTLVK 596 (786)
Q Consensus 540 GADAVmViPPyY~kp----------------------s~S~eeLv~YFraIAeAtdLPIiLYNiP~~-TGv~LSpelL~r 596 (786)
-.++||+--|.|--. +++.++|.+-|.+-.+.++.-+++-=+|+. ||..++.+.+.+
T Consensus 160 ~~~GvliPiPQYPLYsAti~l~~~~~v~YyLdEe~~W~ld~~el~~~~~eA~k~i~~r~lvvINPGNPTGqvls~e~ie~ 239 (475)
T KOG0258|consen 160 KKTGVLIPIPQYPLYSATISLLGGTQVPYYLDEESNWSLDVAELERSVDEARKGINPRALVVINPGNPTGQVLSEENIEG 239 (475)
T ss_pred CCCceEeecCCCchhHHHHHHhCCcccceeeccccCCCCCHHHHHHHHHHHhccCCceEEEEECCCCccchhhcHHHHHH
Confidence 678898877665211 135778888888777777766666666775 999999998888
Q ss_pred HH---hCCCEEEEEeC----CH-------HHHHHHHhhc---CCCCEEEEeCCcchhhhhhccCCccccccccccccHHH
Q psy11975 597 LA---HHENIRGVKDT----DN-------IKLANMANQT---KDLNFSVFAGSAGYLLSGLLVGCAGGINALSAVLGGPI 659 (786)
Q Consensus 597 LA---eiPNVVGIKDS----Dl-------~ri~~ll~~~---~~~df~Vf~G~DelLL~aL~~GAdG~Isg~aN~~Pel~ 659 (786)
+. .-.+++-+-|+ ++ ..+.+++... ...++..+.=...-.-.+..+|-.|.-.=.-|+-|+..
T Consensus 240 i~~fa~~~~l~llaDEVYQ~Nvy~~~skFhSfKKvl~emg~~~~~~v~L~SfhSvSKGy~gECG~RGGYmEv~n~~prv~ 319 (475)
T KOG0258|consen 240 IICFAAEEGLVLLADEVYQDNVYTTGSKFHSFKKVLHEMGNPYPDNVSLASFHSVSKGYMGECGQRGGYMESLNRDPRVK 319 (475)
T ss_pred HHHHHHHcCeEEechHHHHhhccCCCcchHhHHHHHHHhcCccCCceEEEeeecccccceeeecccCCeeecccCChhHH
Confidence 86 34678888777 22 2334444421 11234444333322223445777777777778999998
Q ss_pred HHHHHHHH
Q psy11975 660 CELYDLAK 667 (786)
Q Consensus 660 vaL~eA~~ 667 (786)
.++++...
T Consensus 320 ~qi~Kl~s 327 (475)
T KOG0258|consen 320 QQIKKLAS 327 (475)
T ss_pred HHHHHHHh
Confidence 88888764
No 411
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=34.31 E-value=1.1e+02 Score=33.83 Aligned_cols=76 Identities=9% Similarity=0.066 Sum_probs=59.4
Q ss_pred EeCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHhcCCCCEEEEeCCCCcCCccCHHHHHHHH
Q psy11975 519 KPQKHTTTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLA 598 (786)
Q Consensus 519 aGVGa~ST~EAIELAr~Ae~aGADAVmViPPyY~kps~S~eeLv~YFraIAeAtdLPIiLYNiP~~TGv~LSpelL~rLA 598 (786)
......+.+.+....+.|++.++-.|+-+.|--.+.. ..+.+..+.+.+|+..++||.|.--= |. +.+.+.+..
T Consensus 21 ~AfN~~n~e~~~avi~AAee~~sPvIiq~~~~~~~~~-g~~~~~~~~~~~A~~~~VPV~lHLDH---g~--~~e~i~~Ai 94 (284)
T PRK09195 21 PAFNIHNLETMQVVVETAAELHSPVIIAGTPGTFSYA-GTEYLLAIVSAAAKQYHHPLALHLDH---HE--KFDDIAQKV 94 (284)
T ss_pred EEEEeCCHHHHHHHHHHHHHhCCCEEEEcChhHHhhC-CHHHHHHHHHHHHHHCCCCEEEECCC---CC--CHHHHHHHH
Confidence 4555668899999999999999999999988655442 36789999999999999999987532 22 467777776
Q ss_pred hC
Q psy11975 599 HH 600 (786)
Q Consensus 599 ei 600 (786)
+.
T Consensus 95 ~~ 96 (284)
T PRK09195 95 RS 96 (284)
T ss_pred Hc
Confidence 54
No 412
>PF00490 ALAD: Delta-aminolevulinic acid dehydratase; InterPro: IPR001731 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway []. The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including vitamin B12, haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin []. The first stage in tetrapyrrole synthesis is the synthesis of 5-aminoaevulinic acid ALA via two possible routes: (1) condensation of succinyl CoA and glycine (C4 pathway) using ALA synthase (2.3.1.37 from EC), or (2) decarboxylation of glutamate (C5 pathway) via three different enzymes, glutamyl-tRNA synthetase (6.1.1.17 from EC) to charge a tRNA with glutamate, glutamyl-tRNA reductase (1.2.1.70 from EC) to reduce glutamyl-tRNA to glutamate-1-semialdehyde (GSA), and GSA aminotransferase (5.4.3.8 from EC) to catalyse a transamination reaction to produce ALA. The second stage is to convert ALA to uroporphyrinogen III, the first macrocyclic tetrapyrrolic structure in the pathway. This is achieved by the action of three enzymes in one common pathway: porphobilinogen (PBG) synthase (or ALA dehydratase, 4.2.1.24 from EC) to condense two ALA molecules to generate porphobilinogen; hydroxymethylbilane synthase (or PBG deaminase, 2.5.1.61 from EC) to polymerise four PBG molecules into preuroporphyrinogen (tetrapyrrole structure); and uroporphyrinogen III synthase (4.2.1.75 from EC) to link two pyrrole units together (rings A and D) to yield uroporphyrinogen III. Uroporphyrinogen III is the first branch point of the pathway. To synthesise cobalamin (vitamin B12), sirohaem, and coenzyme F430, uroporphyrinogen III needs to be converted into precorrin-2 by the action of uroporphyrinogen III methyltransferase (2.1.1.107 from EC). To synthesise haem and chlorophyll, uroporphyrinogen III needs to be decarboxylated into coproporphyrinogen III by the action of uroporphyrinogen III decarboxylase (4.1.1.37 from EC) []. This entry represents porphobilinogen (PBG) synthase (PBGS, or 5-aminoaevulinic acid dehydratase, or ALAD, 4.2.1.24 from EC), which functions during the second stage of tetrapyrrole biosynthesis. This enzyme catalyses a Knorr-type condensation reaction between two molecules of ALA to generate porphobilinogen, the pyrrolic building block used in later steps []. The structure of the enzyme is based on a TIM barrel topology made up of eight identical subunits, where each subunit binds to a metal ion that is essential for activity, usually zinc (in yeast, mammals and certain bacteria) or magnesium (in plants and other bacteria). A lysine has been implicated in the catalytic mechanism []. The lack of PBGS enzyme causes a rare porphyric disorder known as ALAD porphyria, which appears to involve conformational changes in the enzyme [.; GO: 0004655 porphobilinogen synthase activity, 0046872 metal ion binding, 0033014 tetrapyrrole biosynthetic process; PDB: 2C1H_A 1W1Z_A 1GZG_B 1W5O_B 1W5Q_B 2C18_A 1B4K_A 2C19_B 1W56_B 2C13_B ....
Probab=34.13 E-value=94 Score=35.04 Aligned_cols=48 Identities=15% Similarity=0.263 Sum_probs=36.0
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHhcCCCCEEEEeC
Q psy11975 525 TTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNN 581 (786)
Q Consensus 525 ST~EAIELAr~Ae~aGADAVmViPPyY~kps~S~eeLv~YFraIAeAtdLPIiLYNi 581 (786)
+.+||+..+..=.+-|||.+||=|-..| .+-.+++.+.+++|+..||.
T Consensus 228 N~~EAlre~~~D~~EGAD~lMVKPal~Y---------LDIi~~~k~~~~~P~~aYqV 275 (324)
T PF00490_consen 228 NRREALREAELDIEEGADILMVKPALPY---------LDIIRRVKERFDLPVAAYQV 275 (324)
T ss_dssp -HHHHHHHHHHHHHTT-SEEEEESSGGG---------HHHHHHHHHHCTS-EEEEET
T ss_pred cHHHHHHHhhhhHhhCCCEEEeecchhH---------HHHHHHHHHhcCCCEEEEEe
Confidence 6788888888888889999999875432 35566777888999999995
No 413
>COG2100 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=34.07 E-value=1e+02 Score=35.03 Aligned_cols=119 Identities=18% Similarity=0.199 Sum_probs=73.1
Q ss_pred CCCCCHHHHHHHHHhCCCCCccCCCccccccCCC-CCCCCCCCCCccccCCC-CeEEEeCCCCCHHHHHHHHHHHHHcCC
Q psy11975 464 STSMPIQKRKSLLRKFPLWPELEPSTSELKRSDR-PMSVGPRSVRPSEREWQ-ADLLKPQKHTTTRATIDLTQKAAKAGA 541 (786)
Q Consensus 464 ~~sLT~dER~~Lle~~~~wve~~a~~~e~~~~~~-~~~~~~r~v~veevaGR-VPVIaGVGa~ST~EAIELAr~Ae~aGA 541 (786)
+..|+.+--.+|.++ +++| - +-+++.+.+ ...++|+-..+.+-+++.|+.+.++|+
T Consensus 199 g~~L~~~lv~eLeeA---------------GLdRiN-------lSv~aLDpk~Ak~L~G~~dYdv~kvle~aE~i~~a~i 256 (414)
T COG2100 199 GVLLSKKLVDELEEA---------------GLDRIN-------LSVDALDPKLAKMLAGRKDYDVKKVLEVAEYIANAGI 256 (414)
T ss_pred ceeccHHHHHHHHHh---------------CCceEE-------eecccCCHHHHHHhcCccccCHHHHHHHHHHHHhCCC
Confidence 468898888888887 2222 1 122333432 467889999999999999999999999
Q ss_pred CEEEEcCCCCCCCCCCHHH---HHHHHHHHHhcC-CCCEEEEeC-CCCcCCc------cCH-HHHHHHHhCCCEEEEE
Q psy11975 542 NAALILCPYYFQKKMTEDL---IYEHFISVADNS-PIPVIIYNN-TFVTNID------ISV-DTLVKLAHHENIRGVK 607 (786)
Q Consensus 542 DAVmViPPyY~kps~S~ee---Lv~YFraIAeAt-dLPIiLYNi-P~~TGv~------LSp-elL~rLAeiPNVVGIK 607 (786)
|- ++. |.. -|+.++++ +++|-++|...- .-|+.++++ |...|.. ++. ++..+|.+...=.|+|
T Consensus 257 dv-lIa-Pv~-lPG~ND~E~~~iIe~A~~iGaGkk~p~lgiQkyipyk~GRkp~~~k~~~fkeFYrwLrelEketg~k 331 (414)
T COG2100 257 DV-LIA-PVW-LPGVNDDEMPKIIEWAREIGAGKKWPPLGIQKYIPYKFGRKPVIAKVWPFKEFYRWLRELEKETGVK 331 (414)
T ss_pred CE-EEe-eee-cCCcChHHHHHHHHHHHHhCCCCCCCCcceEEeeeecccCCccccccCcHHHHHHHHHHHHHHhCCC
Confidence 93 333 433 23344666 456666665333 356777776 5555543 343 3445555444444444
No 414
>cd06302 PBP1_LsrB_Quorum_Sensing Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs. Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs from other bacteria. The members of this group are homologous to a family of periplasmic pentose/hexose sugar-binding proteins that function as the primary receptors for chemotaxis and transporters of many sugar based solutes in bacteria and archaea and that are a member of the type I periplasmic binding protein superfamily. LsrB binds a chemically distinct form of the AI-2 signal that lacks boron, in contrast to the Vibrio harveyi AI-2 signaling molecule that has an unusual furanosyl borate diester. Hence, many bacteria coordinate their gene expression according to the local density of their population by producing species specific AI-2. This process of quorum sensing allows LsrB to function as a periplasmic AI-2 binding p
Probab=34.03 E-value=1.7e+02 Score=30.96 Aligned_cols=60 Identities=10% Similarity=0.155 Sum_probs=43.2
Q ss_pred CeEEE-eCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHhcCCCCEEEEeCC
Q psy11975 515 ADLLK-PQKHTTTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNT 582 (786)
Q Consensus 515 VPVIa-GVGa~ST~EAIELAr~Ae~aGADAVmViPPyY~kps~S~eeLv~YFraIAeAtdLPIiLYNiP 582 (786)
..|++ +....+.....++.+.+.+.++||+++.++. .+.+...++++ ...++|+++.|.+
T Consensus 30 ~~v~~~~~~~~d~~~~~~~i~~~~~~~~DgiIi~~~~-------~~~~~~~~~~~-~~~~iPvV~v~~~ 90 (298)
T cd06302 30 VDAIYVGPTTADAAGQVQIIEDLIAQGVDAIAVVPND-------PDALEPVLKKA-REAGIKVVTHDSD 90 (298)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHhcCCCEEEEecCC-------HHHHHHHHHHH-HHCCCeEEEEcCC
Confidence 44554 5566678888889998888999999997532 33345555654 4568999999975
No 415
>COG0502 BioB Biotin synthase and related enzymes [Coenzyme metabolism]
Probab=33.92 E-value=1.1e+02 Score=34.73 Aligned_cols=69 Identities=16% Similarity=0.091 Sum_probs=54.9
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHhcCCCCEEEEeCCCCcCCccCHHHHHHHHh
Q psy11975 524 TTTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAH 599 (786)
Q Consensus 524 ~ST~EAIELAr~Ae~aGADAVmViPPyY~kps~S~eeLv~YFraIAeAtdLPIiLYNiP~~TGv~LSpelL~rLAe 599 (786)
.+.++.++.|+.|++.||....+..-.+.+. ...+.+++..+.|.+..++++++= -| .++.+.+.+|++
T Consensus 84 ~~~eeIle~Ak~ak~~Ga~r~c~~aagr~~~-~~~~~i~~~v~~Vk~~~~le~c~s-----lG-~l~~eq~~~L~~ 152 (335)
T COG0502 84 MEVEEILEAAKKAKAAGATRFCMGAAGRGPG-RDMEEVVEAIKAVKEELGLEVCAS-----LG-MLTEEQAEKLAD 152 (335)
T ss_pred CCHHHHHHHHHHHHHcCCceEEEEEeccCCC-ccHHHHHHHHHHHHHhcCcHHhhc-----cC-CCCHHHHHHHHH
Confidence 3678999999999999977666666555422 258999999999999999888763 36 789999999974
No 416
>cd00384 ALAD_PBGS Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. They either contain a cysteine-rich zinc binding site (consensus DXCXCX(Y/F)X3G(H/Q)CG) or an aspartate-rich magnesium binding site (consensus DXALDX(Y/F)X3G(H/Q)DG). The cyste
Probab=33.90 E-value=92 Score=34.96 Aligned_cols=50 Identities=16% Similarity=0.254 Sum_probs=38.5
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHhcCCCCEEEEeCC
Q psy11975 524 TTTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNT 582 (786)
Q Consensus 524 ~ST~EAIELAr~Ae~aGADAVmViPPyY~kps~S~eeLv~YFraIAeAtdLPIiLYNiP 582 (786)
.+.+||++.+..=.+-|||-+||=|-.. -.+-.+++.+..++|+..||.-
T Consensus 217 an~~eAlre~~~D~~EGAD~lMVKPal~---------YLDIi~~~k~~~~~PvaaYqVS 266 (314)
T cd00384 217 ANRREALREVELDIEEGADILMVKPALA---------YLDIIRDVRERFDLPVAAYNVS 266 (314)
T ss_pred CCHHHHHHHHHhhHHhCCCEEEEcCCch---------HHHHHHHHHHhcCCCEEEEEcc
Confidence 3678888888888888999999987432 2455667777789999999953
No 417
>PRK09283 delta-aminolevulinic acid dehydratase; Validated
Probab=33.89 E-value=93 Score=35.05 Aligned_cols=50 Identities=16% Similarity=0.237 Sum_probs=38.5
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHhcCCCCEEEEeCC
Q psy11975 524 TTTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNT 582 (786)
Q Consensus 524 ~ST~EAIELAr~Ae~aGADAVmViPPyY~kps~S~eeLv~YFraIAeAtdLPIiLYNiP 582 (786)
.+..||++.+..=.+-|||.+||=|-.. -.+-.+++.+.+++|+..||.-
T Consensus 225 ~n~~eAlre~~~D~~EGAD~lMVKPal~---------YLDIi~~~k~~~~~PvaaYqVS 274 (323)
T PRK09283 225 ANRREALREVALDIEEGADMVMVKPALP---------YLDIIRRVKDEFNLPVAAYQVS 274 (323)
T ss_pred CCHHHHHHHHHhhHHhCCCEEEEcCCch---------HHHHHHHHHhcCCCCEEEEEcc
Confidence 4678888888887888999999987432 2455667777789999999953
No 418
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=33.82 E-value=7.4e+02 Score=27.98 Aligned_cols=261 Identities=16% Similarity=0.134 Sum_probs=0.0
Q ss_pred CCCCCHHHHHHHHHhCCCCCccCCCccccccCCCCCCCCCCCCCccccCCCCeEEEeCCCCCHHHHHHHHHHHHHcCCCE
Q psy11975 464 STSMPIQKRKSLLRKFPLWPELEPSTSELKRSDRPMSVGPRSVRPSEREWQADLLKPQKHTTTRATIDLTQKAAKAGANA 543 (786)
Q Consensus 464 ~~sLT~dER~~Lle~~~~wve~~a~~~e~~~~~~~~~~~~r~v~veevaGRVPVIaGVGa~ST~EAIELAr~Ae~aGADA 543 (786)
+..++.+|+..+-+. .....+..+++-+-+. .+-.+.|.++|++.
T Consensus 44 ~p~~~~~~~e~i~~i------------------------------~~~~~~~~i~~~~r~~-----~~di~~a~~~g~~~ 88 (365)
T TIGR02660 44 IPAMGEEERAVIRAI------------------------------VALGLPARLMAWCRAR-----DADIEAAARCGVDA 88 (365)
T ss_pred CCCCCHHHHHHHHHH------------------------------HHcCCCcEEEEEcCCC-----HHHHHHHHcCCcCE
Q ss_pred EEEcCCCC-------CCCCCCHHHHHHHHHHHHhcC--CCCEEEEeCCCCcCCccCHHHHHHHH----hC-CCEEEEEeC
Q psy11975 544 ALILCPYY-------FQKKMTEDLIYEHFISVADNS--PIPVIIYNNTFVTNIDISVDTLVKLA----HH-ENIRGVKDT 609 (786)
Q Consensus 544 VmViPPyY-------~kps~S~eeLv~YFraIAeAt--dLPIiLYNiP~~TGv~LSpelL~rLA----ei-PNVVGIKDS 609 (786)
|-+..|.. ++-+ .++.++-+.+..+.+ .---+-++++..+..+ ++.+.+++ +. ...+.++|+
T Consensus 89 i~i~~~~Sd~~~~~~~~~s--~~e~l~~~~~~i~~ak~~g~~v~~~~ed~~r~~--~~~l~~~~~~~~~~Ga~~i~l~DT 164 (365)
T TIGR02660 89 VHISIPVSDLQIEAKLRKD--RAWVLERLARLVSFARDRGLFVSVGGEDASRAD--PDFLVELAEVAAEAGADRFRFADT 164 (365)
T ss_pred EEEEEccCHHHHHHHhCcC--HHHHHHHHHHHHHHHHhCCCEEEEeecCCCCCC--HHHHHHHHHHHHHcCcCEEEEccc
Q ss_pred -------CHHHHHHHHhhcCCCCEEEEeCCc-----chhhhhhccCC---ccccccc----cccccHHHHHHHHHHHcCC
Q psy11975 610 -------DNIKLANMANQTKDLNFSVFAGSA-----GYLLSGLLVGC---AGGINAL----SAVLGGPICELYDLAKAGK 670 (786)
Q Consensus 610 -------Dl~ri~~ll~~~~~~df~Vf~G~D-----elLL~aL~~GA---dG~Isg~----aN~~Pel~vaL~eA~~aGD 670 (786)
.+.++-+.+++..+-.+.+-+=+| ...+.++.+|+ +|.+.|+ +|..-+.++........-+
T Consensus 165 ~G~~~P~~v~~lv~~l~~~~~v~l~~H~HNd~GlA~ANalaA~~aGa~~vd~tl~GiGeraGN~~lE~lv~~L~~~~g~~ 244 (365)
T TIGR02660 165 VGILDPFSTYELVRALRQAVDLPLEMHAHNDLGMATANTLAAVRAGATHVNTTVNGLGERAGNAALEEVAMALKRLLGRD 244 (365)
T ss_pred CCCCCHHHHHHHHHHHHHhcCCeEEEEecCCCChHHHHHHHHHHhCCCEEEEEeeccccccccCCHHHHHHHHHHhcCCC
Q ss_pred HHHHHHHHHHhhhhHHHHHhhhhccccCHHHHHHHHHHcCCC-CCCCCCC--CCCCCCHHH--------------HHHHH
Q psy11975 671 WEEAMKLQHRLVKPDVTVRNVLLMKEMGVPGVRAAMELYGYY-GGRSRRP--LPAALKPGG--------------AEKIK 733 (786)
Q Consensus 671 ~eeAreLQ~rL~pLi~~l~~~~~~~~~~ia~lKaaL~lrGI~-~G~vR~P--L~~pLseee--------------kaeL~ 733 (786)
..-=..-...+..++..+-+........+.+--+....-|+- .|..+-| +. +++++. +..|+
T Consensus 245 ~~idl~~l~~~s~~v~~~~~~~~~~~~p~vG~~~f~h~sGiH~~~i~k~~~~Ye-~~~P~~vG~~~~~~i~~~SG~~~i~ 323 (365)
T TIGR02660 245 TGIDTSRLPALSQLVARASGRPIPPQKPVVGESVFTHESGIHVDGLLKDPRTYE-PFDPELVGRSRRIVIGKHSGRAALI 323 (365)
T ss_pred CCcCHHHHHHHHHHHHHHhCCCCCCCCCcccHhHHHhccchhHHHHhCCcccCC-CcCHHHcCCeeEEEeEchhhHHHHH
Q ss_pred HHHHHcCC--CCccchhchhhhccccCccCCCC
Q psy11975 734 QVLTEAGF--LVPGVRAAMELYGYYGGRSRRPL 764 (786)
Q Consensus 734 ~~L~~lGl--l~~~~~~~~~~~~~~~~~~~~~~ 764 (786)
..|+++|+ -+..+.+.++.=+.++.+.||++
T Consensus 324 ~~l~~~g~~~~~~~~~~~~~~vk~~~~~~~~~~ 356 (365)
T TIGR02660 324 NALAQLGIPLSEEEAAALLPAVRAFATRLKRPL 356 (365)
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHHHHHhcCCCC
No 419
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=33.72 E-value=1.4e+02 Score=33.84 Aligned_cols=55 Identities=18% Similarity=0.223 Sum_probs=35.7
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHhcCCCCEEE
Q psy11975 521 QKHTTTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVII 578 (786)
Q Consensus 521 VGa~ST~EAIELAr~Ae~aGADAVmViPPyY~kps~S~eeLv~YFraIAeAtdLPIiL 578 (786)
.+..+.+..+++++.+.++||+.|.+.--.- . ++++++.+.++.+.+..++||-+
T Consensus 139 ~~r~~~~~l~~~~~~~~~~Ga~~I~l~DT~G-~--~~P~~v~~lv~~l~~~~~~~l~~ 193 (378)
T PRK11858 139 ASRTDLDFLIEFAKAAEEAGADRVRFCDTVG-I--LDPFTMYELVKELVEAVDIPIEV 193 (378)
T ss_pred CCCCCHHHHHHHHHHHHhCCCCEEEEeccCC-C--CCHHHHHHHHHHHHHhcCCeEEE
Confidence 3345677777777777777777766655432 2 24777777777777666666544
No 420
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=33.63 E-value=7.5e+02 Score=27.98 Aligned_cols=119 Identities=9% Similarity=0.013 Sum_probs=73.0
Q ss_pred CeEEEeCCCCCHHHHHHHHHHHHHcC--CCEEEEcCCCCCCCCCCHHHHHHHHHHHHhcCCCCEE-EEeCCCCcCCccCH
Q psy11975 515 ADLLKPQKHTTTRATIDLTQKAAKAG--ANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVI-IYNNTFVTNIDISV 591 (786)
Q Consensus 515 VPVIaGVGa~ST~EAIELAr~Ae~aG--ADAVmViPPyY~kps~S~eeLv~YFraIAeAtdLPIi-LYNiP~~TGv~LSp 591 (786)
+++.++++ .+.+..+.+....++| +|.|.+-.-.- ..+.+++..+.|.+..+.|++ .=|. .+.
T Consensus 83 L~v~~SvG--~t~e~~~r~~~lv~a~~~~d~i~~D~ahg-----~s~~~~~~i~~i~~~~p~~~vi~GnV-------~t~ 148 (321)
T TIGR01306 83 LFASISVG--VKACEYEFVTQLAEEALTPEYITIDIAHG-----HSNSVINMIKHIKTHLPDSFVIAGNV-------GTP 148 (321)
T ss_pred cEEEEEcC--CCHHHHHHHHHHHhcCCCCCEEEEeCccC-----chHHHHHHHHHHHHhCCCCEEEEecC-------CCH
Confidence 44445554 4577788888888888 79887765432 256788888888888877744 4332 478
Q ss_pred HHHHHHHhCCCEEEEEeC--------------------CHHHHHHHHhhcCCCCEEE-EeCCc---chhhhhhccCCccc
Q psy11975 592 DTLVKLAHHENIRGVKDT--------------------DNIKLANMANQTKDLNFSV-FAGSA---GYLLSGLLVGCAGG 647 (786)
Q Consensus 592 elL~rLAeiPNVVGIKDS--------------------Dl~ri~~ll~~~~~~df~V-f~G~D---elLL~aL~~GAdG~ 647 (786)
+...+|.+. .+-|||-+ .+..+.++.+ .. ++.| ..|.= .-..-+|++||+++
T Consensus 149 e~a~~l~~a-Gad~I~V~~G~G~~~~tr~~~g~g~~~~~l~ai~ev~~-a~--~~pVIadGGIr~~~Di~KALa~GAd~V 224 (321)
T TIGR01306 149 EAVRELENA-GADATKVGIGPGKVCITKIKTGFGTGGWQLAALRWCAK-AA--RKPIIADGGIRTHGDIAKSIRFGASMV 224 (321)
T ss_pred HHHHHHHHc-CcCEEEECCCCCccccceeeeccCCCchHHHHHHHHHH-hc--CCeEEEECCcCcHHHHHHHHHcCCCEE
Confidence 888888753 33333322 1223444433 22 3333 33331 23667899999999
Q ss_pred cccc
Q psy11975 648 INAL 651 (786)
Q Consensus 648 Isg~ 651 (786)
+.+.
T Consensus 225 mig~ 228 (321)
T TIGR01306 225 MIGS 228 (321)
T ss_pred eech
Confidence 8884
No 421
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=33.62 E-value=1.3e+02 Score=34.45 Aligned_cols=213 Identities=15% Similarity=0.141 Sum_probs=111.2
Q ss_pred cCCCCeEEEeCC----CCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHhcCCCCEEEEeCCCCcC
Q psy11975 511 REWQADLLKPQK----HTTTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTN 586 (786)
Q Consensus 511 vaGRVPVIaGVG----a~ST~EAIELAr~Ae~aGADAVmViPPyY~kps~S~eeLv~YFraIAeAtdLPIiLYNiP~~TG 586 (786)
.+|..||.++.- ..+++.+++.++..+++|+|-|=+.-| +.+-.+-+..|.+.+++|++.=
T Consensus 22 iGg~~Pi~VQSMt~t~T~Dv~atv~Qi~~L~~aGceiVRvav~--------~~~~a~al~~I~~~~~iPlvAD------- 86 (360)
T PRK00366 22 IGGDAPIVVQSMTNTDTADVEATVAQIKRLARAGCEIVRVAVP--------DMEAAAALPEIKKQLPVPLVAD------- 86 (360)
T ss_pred ECCCCcEEEEecCCCCchhHHHHHHHHHHHHHcCCCEEEEccC--------CHHHHHhHHHHHHcCCCCEEEe-------
Confidence 578889988543 455788899999999999999988854 3445678889999999998852
Q ss_pred CccCHHHHHHHHhCCCEEEEEeC-----C-HHHHHHHHhhcCCCCEEEEeCCcch-hhhhh-c-cCC---cccccccccc
Q psy11975 587 IDISVDTLVKLAHHENIRGVKDT-----D-NIKLANMANQTKDLNFSVFAGSAGY-LLSGL-L-VGC---AGGINALSAV 654 (786)
Q Consensus 587 v~LSpelL~rLAeiPNVVGIKDS-----D-l~ri~~ll~~~~~~df~Vf~G~Del-LL~aL-~-~GA---dG~Isg~aN~ 654 (786)
+.+...+..+-++. .+-+|-.. + .+++.++++.....++.+=.|...- +-.-+ . .|. .+.+-+.
T Consensus 87 IHFd~~lAl~a~~~-G~~~iRINPGNig~~~~~v~~vv~~ak~~~ipIRIGvN~GSL~~~~~~~yg~~t~eamveSA--- 162 (360)
T PRK00366 87 IHFDYRLALAAAEA-GADALRINPGNIGKRDERVREVVEAAKDYGIPIRIGVNAGSLEKDLLEKYGEPTPEALVESA--- 162 (360)
T ss_pred cCCCHHHHHHHHHh-CCCEEEECCCCCCchHHHHHHHHHHHHHCCCCEEEecCCccChHHHHHHcCCCCHHHHHHHH---
Confidence 23334433332211 13333333 2 3455555543333344444444321 21111 1 221 1111110
Q ss_pred ccHHHHHHHHHH---------HcCCHHHHHHHHHHhhhhHHHHHhhhhc-ccc-CHHHHHHHHH-----HcCCCCCCCCC
Q psy11975 655 LGGPICELYDLA---------KAGKWEEAMKLQHRLVKPDVTVRNVLLM-KEM-GVPGVRAAME-----LYGYYGGRSRR 718 (786)
Q Consensus 655 ~Pel~vaL~eA~---------~aGD~eeAreLQ~rL~pLi~~l~~~~~~-~~~-~ia~lKaaL~-----lrGI~~G~vR~ 718 (786)
-..+++++.+ ++-|.....+.++.+....++=...... .+. .-..+|-++. ..|+ ...+|-
T Consensus 163 --l~~~~~le~~~f~~iviS~KsS~v~~~i~ayrlla~~~dyPLHlGvTEAG~~~~G~iKSa~gig~LL~~GI-GDTiRV 239 (360)
T PRK00366 163 --LRHAKILEELGFDDIKISVKASDVQDLIAAYRLLAKRCDYPLHLGVTEAGMGFKGTVKSAAGLGALLQEGI-GDTIRV 239 (360)
T ss_pred --HHHHHHHHHCCCCcEEEEEEcCCHHHHHHHHHHHHhcCCCCceecccCCCCCCCceehhHHHHHHHHHhcC-CCeEEE
Confidence 1122233222 1234444444444333222110000001 111 1234665443 2355 235788
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCCCCccc
Q psy11975 719 PLPAALKPGGAEKIKQVLTEAGFLVPGV 746 (786)
Q Consensus 719 PL~~pLseeekaeL~~~L~~lGll~~~~ 746 (786)
-|. .-+.+|...-.++|+.+|+...+.
T Consensus 240 SLt-~~P~~EV~va~~IL~slglr~~g~ 266 (360)
T PRK00366 240 SLT-ADPVEEVKVGQEILQSLGLRSRGP 266 (360)
T ss_pred eCC-CCCHHHHHHHHHHHHHcCCccCCC
Confidence 888 777888999999999999966543
No 422
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=33.57 E-value=1e+02 Score=31.77 Aligned_cols=74 Identities=18% Similarity=0.127 Sum_probs=44.4
Q ss_pred CCeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCC-CCHHHHHHHHHHHHhcCCCCEEEEeCCCCcCCccCHH
Q psy11975 514 QADLLKPQKHTTTRATIDLTQKAAKAGANAALILCPYYFQKK-MTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVD 592 (786)
Q Consensus 514 RVPVIaGVGa~ST~EAIELAr~Ae~aGADAVmViPPyY~kps-~S~eeLv~YFraIAeAtdLPIiLYNiP~~TGv~LSpe 592 (786)
.+++++.+.. .+.++.+.+.|+|++.+.++.-.... ..+....++++++.+.+++||++= -|+. +++
T Consensus 102 ~i~~i~~v~~------~~~~~~~~~~gad~i~~~~~~~~G~~~~~~~~~~~~i~~i~~~~~~Pvi~~-----GGI~-~~~ 169 (236)
T cd04730 102 GIKVIPTVTS------VEEARKAEAAGADALVAQGAEAGGHRGTFDIGTFALVPEVRDAVDIPVIAA-----GGIA-DGR 169 (236)
T ss_pred CCEEEEeCCC------HHHHHHHHHcCCCEEEEeCcCCCCCCCccccCHHHHHHHHHHHhCCCEEEE-----CCCC-CHH
Confidence 4677776532 25567788899999988664211100 001134678888888888998862 2322 247
Q ss_pred HHHHHHh
Q psy11975 593 TLVKLAH 599 (786)
Q Consensus 593 lL~rLAe 599 (786)
.+.++.+
T Consensus 170 ~v~~~l~ 176 (236)
T cd04730 170 GIAAALA 176 (236)
T ss_pred HHHHHHH
Confidence 7777554
No 423
>cd04823 ALAD_PBGS_aspartate_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. All of PBGS_aspartate_rich contain an aspartate rich metal binding site with the general sequence DXALDX(Y/F)X3G(H/Q)DG. They also contain an allosteric magnesiu
Probab=33.49 E-value=97 Score=34.87 Aligned_cols=50 Identities=14% Similarity=0.210 Sum_probs=38.2
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHhcCCCCEEEEeCC
Q psy11975 524 TTTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNT 582 (786)
Q Consensus 524 ~ST~EAIELAr~Ae~aGADAVmViPPyY~kps~S~eeLv~YFraIAeAtdLPIiLYNiP 582 (786)
.+..||+..+..=.+-|||-+||=|-.. -.+-.+++.+..++||..||.-
T Consensus 222 ~n~~eAlre~~~Di~EGAD~lMVKPal~---------YLDIi~~~k~~~~lPvaaYqVS 271 (320)
T cd04823 222 ANSREALREVALDIAEGADMVMVKPGMP---------YLDIIRRVKDEFGVPTFAYQVS 271 (320)
T ss_pred CCHHHHHHHHHhhHHhCCCEEEEcCCch---------HHHHHHHHHHhcCCCEEEEEcc
Confidence 3568888888888888999999987432 2355566777789999999953
No 424
>PRK06801 hypothetical protein; Provisional
Probab=33.36 E-value=7e+02 Score=27.60 Aligned_cols=140 Identities=11% Similarity=0.021 Sum_probs=83.3
Q ss_pred CCeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHhc---CCCCE--EEEeCCCCc---
Q psy11975 514 QADLLKPQKHTTTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADN---SPIPV--IIYNNTFVT--- 585 (786)
Q Consensus 514 RVPVIaGVGa~ST~EAIELAr~Ae~aGADAVmViPPyY~kps~S~eeLv~YFraIAeA---tdLPI--iLYNiP~~T--- 585 (786)
.+||.++.-+.... +.++.|.+.|++.||+=--.+ +.++-++.-++|.+. .+++| -+=.+.+..
T Consensus 74 ~vpV~lHlDH~~~~---e~i~~Ai~~GftSVm~D~S~l-----~~eeNi~~t~~v~~~a~~~gv~VE~ElG~vgg~e~~v 145 (286)
T PRK06801 74 DIPVVLNLDHGLHF---EAVVRALRLGFSSVMFDGSTL-----EYEENVRQTREVVKMCHAVGVSVEAELGAVGGDEGGA 145 (286)
T ss_pred CCCEEEECCCCCCH---HHHHHHHHhCCcEEEEcCCCC-----CHHHHHHHHHHHHHHHHHcCCeEEeecCcccCCCCCc
Confidence 68999999987654 446677889999999965332 256666666666443 35554 222222211
Q ss_pred -----CC--ccCHHHHHHHHh-C-CCEEEE-------EeC-----CHHHHHHHHhhcCCCCEEEEeCC---cchhhhhhc
Q psy11975 586 -----NI--DISVDTLVKLAH-H-ENIRGV-------KDT-----DNIKLANMANQTKDLNFSVFAGS---AGYLLSGLL 641 (786)
Q Consensus 586 -----Gv--~LSpelL~rLAe-i-PNVVGI-------KDS-----Dl~ri~~ll~~~~~~df~Vf~G~---DelLL~aL~ 641 (786)
|. .-.|+...+.++ . .-..++ |+. |++++.++.+. .+-.+.+..|. ++.+..+..
T Consensus 146 ~~~~~~~~~~T~pe~a~~f~~~tgvD~LAvaiGt~Hg~y~~~~~l~~e~l~~i~~~-~~~PLVlHGGSgi~~e~~~~~i~ 224 (286)
T PRK06801 146 LYGEADSAKFTDPQLARDFVDRTGIDALAVAIGNAHGKYKGEPKLDFARLAAIHQQ-TGLPLVLHGGSGISDADFRRAIE 224 (286)
T ss_pred ccCCcccccCCCHHHHHHHHHHHCcCEEEeccCCCCCCCCCCCCCCHHHHHHHHHh-cCCCEEEECCCCCCHHHHHHHHH
Confidence 11 224577777763 1 235555 443 78888888653 33345444442 345677788
Q ss_pred cCCccccccccccccHHHHHHHHHHH
Q psy11975 642 VGCAGGINALSAVLGGPICELYDLAK 667 (786)
Q Consensus 642 ~GAdG~Isg~aN~~Pel~vaL~eA~~ 667 (786)
.|++++ |+.-++..+.+++++
T Consensus 225 ~Gi~KI-----Nv~T~~~~a~~~~~~ 245 (286)
T PRK06801 225 LGIHKI-----NFYTGMSQAALAAVE 245 (286)
T ss_pred cCCcEE-----EehhHHHHHHHHHHH
Confidence 898876 455566666666654
No 425
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=32.99 E-value=1.4e+02 Score=32.86 Aligned_cols=77 Identities=9% Similarity=0.105 Sum_probs=58.1
Q ss_pred EEeCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHhcCCCCEEEEeCCCCcCCccCHHHHHHH
Q psy11975 518 LKPQKHTTTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKL 597 (786)
Q Consensus 518 IaGVGa~ST~EAIELAr~Ae~aGADAVmViPPyY~kps~S~eeLv~YFraIAeAtdLPIiLYNiP~~TGv~LSpelL~rL 597 (786)
|......+.+.+....+.|++.++..++-+.|.-.+.. .-+.+..+.+.+|+.+.+||.|.=-= | -+.+.+.+-
T Consensus 15 V~AfN~~n~e~~~avi~AAe~~~sPvIi~~~~~~~~~~-~~~~~~~~~~~~a~~~~VPV~lHLDH---~--~~~~~i~~a 88 (276)
T cd00947 15 VGAFNINNLETLKAILEAAEETRSPVILQISEGAIKYA-GLELLVAMVKAAAERASVPVALHLDH---G--SSFELIKRA 88 (276)
T ss_pred EEEEeeCCHHHHHHHHHHHHHhCCCEEEEcCcchhhhC-CHHHHHHHHHHHHHHCCCCEEEECCC---C--CCHHHHHHH
Confidence 33455567888899999999999999999988655432 36789999999999999999998531 2 246777666
Q ss_pred HhC
Q psy11975 598 AHH 600 (786)
Q Consensus 598 Aei 600 (786)
.+.
T Consensus 89 i~~ 91 (276)
T cd00947 89 IRA 91 (276)
T ss_pred HHh
Confidence 554
No 426
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=32.89 E-value=1.7e+02 Score=32.77 Aligned_cols=53 Identities=13% Similarity=0.039 Sum_probs=31.4
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHhcCC--CCEEE
Q psy11975 523 HTTTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSP--IPVII 578 (786)
Q Consensus 523 a~ST~EAIELAr~Ae~aGADAVmViPPyY~kps~S~eeLv~YFraIAeAtd--LPIiL 578 (786)
..+.++.+++++.+.++|||.|-+.-..-. ++++++.++++.+-+..+ +||-+
T Consensus 139 ~~~~e~l~~~a~~~~~~Ga~~i~i~DT~G~---~~P~~v~~~v~~l~~~l~~~i~ig~ 193 (333)
T TIGR03217 139 MTPPEKLAEQAKLMESYGADCVYIVDSAGA---MLPDDVRDRVRALKAVLKPETQVGF 193 (333)
T ss_pred CCCHHHHHHHHHHHHhcCCCEEEEccCCCC---CCHHHHHHHHHHHHHhCCCCceEEE
Confidence 345566666666666667776655554322 236666666666666554 55544
No 427
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=32.86 E-value=1.5e+02 Score=32.41 Aligned_cols=57 Identities=9% Similarity=0.017 Sum_probs=44.1
Q ss_pred CCCHHHHHHHHHHHHHcC-CCEEEEcCCCCCCCCCCHHHHHHHHHHHHhcC--CCCEEEE
Q psy11975 523 HTTTRATIDLTQKAAKAG-ANAALILCPYYFQKKMTEDLIYEHFISVADNS--PIPVIIY 579 (786)
Q Consensus 523 a~ST~EAIELAr~Ae~aG-ADAVmViPPyY~kps~S~eeLv~YFraIAeAt--dLPIiLY 579 (786)
..+.+...+++++..+.| +|++++.--.--...++.+|-.+..+.+.+.+ .+||++-
T Consensus 17 ~iD~~~~~~~i~~~i~~G~v~gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~~~~pvi~g 76 (290)
T TIGR00683 17 TINEKGLRQIIRHNIDKMKVDGLYVGGSTGENFMLSTEEKKEIFRIAKDEAKDQIALIAQ 76 (290)
T ss_pred CcCHHHHHHHHHHHHhCCCcCEEEECCcccccccCCHHHHHHHHHHHHHHhCCCCcEEEe
Confidence 567888999999999999 99999885432223356899999988888877 3787754
No 428
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=32.79 E-value=56 Score=37.44 Aligned_cols=75 Identities=12% Similarity=0.097 Sum_probs=46.5
Q ss_pred CCeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHhcCCCCEEEEeCCCCcCCccCHHH
Q psy11975 514 QADLLKPQKHTTTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDT 593 (786)
Q Consensus 514 RVPVIaGVGa~ST~EAIELAr~Ae~aGADAVmViPPyY~kps~S~eeLv~YFraIAeAtdLPIiLYNiP~~TGv~LSpel 593 (786)
.+++++|+.+ ..+.++.++.|.++|+|.|.+. |.|.... ......++++++.+..++||++- .| ++.+.
T Consensus 107 G~~~~~g~~s--~~t~~e~~~~a~~~GaD~I~~~-pg~~~~~-~~~~~~~~l~~l~~~~~iPI~a~-----GG--I~~~n 175 (430)
T PRK07028 107 GVRLMADLIN--VPDPVKRAVELEELGVDYINVH-VGIDQQM-LGKDPLELLKEVSEEVSIPIAVA-----GG--LDAET 175 (430)
T ss_pred CCEEEEEecC--CCCHHHHHHHHHhcCCCEEEEE-eccchhh-cCCChHHHHHHHHhhCCCcEEEE-----CC--CCHHH
Confidence 3467776322 2224566788899999999776 4442211 01123568888888778888762 23 46788
Q ss_pred HHHHHh
Q psy11975 594 LVKLAH 599 (786)
Q Consensus 594 L~rLAe 599 (786)
+.++.+
T Consensus 176 ~~~~l~ 181 (430)
T PRK07028 176 AAKAVA 181 (430)
T ss_pred HHHHHH
Confidence 877764
No 429
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=32.71 E-value=6.3e+02 Score=26.87 Aligned_cols=129 Identities=14% Similarity=0.186 Sum_probs=73.0
Q ss_pred HHHHHHcCCCEEEEcCCCC---C--CCCCCHHHHHHHHHHHHhcC---CCCEEEEeCCCCcCCccCHHHHHHHH----hC
Q psy11975 533 TQKAAKAGANAALILCPYY---F--QKKMTEDLIYEHFISVADNS---PIPVIIYNNTFVTNIDISVDTLVKLA----HH 600 (786)
Q Consensus 533 Ar~Ae~aGADAVmViPPyY---~--kps~S~eeLv~YFraIAeAt---dLPIiLYNiP~~TGv~LSpelL~rLA----ei 600 (786)
++.|.++|++.+-+.-|.- . +...+.++.++-+.++++.+ ++. +-++++..+. .+++.+.+++ +.
T Consensus 75 v~~a~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~-v~~~~~~~~~--~~~~~~~~~~~~~~~~ 151 (259)
T cd07939 75 IEAALRCGVTAVHISIPVSDIHLAHKLGKDRAWVLDQLRRLVGRAKDRGLF-VSVGAEDASR--ADPDFLIEFAEVAQEA 151 (259)
T ss_pred HHHHHhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCe-EEEeeccCCC--CCHHHHHHHHHHHHHC
Confidence 3567788999887765431 1 12234566665555555443 554 3467775443 5688877776 23
Q ss_pred -CCEEEEEeC----CHHHHHHHHhh---cCCCCEEEEeCCcch------hhhhhccCCc---cccccc----cccccHHH
Q psy11975 601 -ENIRGVKDT----DNIKLANMANQ---TKDLNFSVFAGSAGY------LLSGLLVGCA---GGINAL----SAVLGGPI 659 (786)
Q Consensus 601 -PNVVGIKDS----Dl~ri~~ll~~---~~~~df~Vf~G~Del------LL~aL~~GAd---G~Isg~----aN~~Pel~ 659 (786)
+..+.|+|+ .+.++.+++.. ..+-.+. |-+++.+ .+.++..|++ +.+.|+ +|..-|.+
T Consensus 152 G~~~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~l~-~H~Hn~~Gla~An~laAi~aG~~~vd~s~~G~G~~aGN~~tE~l 230 (259)
T cd07939 152 GADRLRFADTVGILDPFTTYELIRRLRAATDLPLE-FHAHNDLGLATANTLAAVRAGATHVSVTVNGLGERAGNAALEEV 230 (259)
T ss_pred CCCEEEeCCCCCCCCHHHHHHHHHHHHHhcCCeEE-EEecCCCChHHHHHHHHHHhCCCEEEEecccccccccCcCHHHH
Confidence 789999999 56666655442 1222343 4455532 3557778873 444443 44444555
Q ss_pred HHHHHH
Q psy11975 660 CELYDL 665 (786)
Q Consensus 660 vaL~eA 665 (786)
+..++.
T Consensus 231 v~~l~~ 236 (259)
T cd07939 231 VMALKH 236 (259)
T ss_pred HHHHHH
Confidence 444443
No 430
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein. This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.
Probab=32.60 E-value=92 Score=33.28 Aligned_cols=49 Identities=18% Similarity=0.184 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHhcCCCCEEEEeCCC
Q psy11975 528 ATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTF 583 (786)
Q Consensus 528 EAIELAr~Ae~aGADAVmViPPyY~kps~S~eeLv~YFraIAeAtdLPIiLYNiP~ 583 (786)
.+.+.++.+.+.|.|++|+---.. .+.+.+.+..+.|.+. .+|+++ +|+
T Consensus 15 ~~~~~~~~~~~~gtdai~vGGS~~----vt~~~~~~~v~~ik~~-~lPvil--fp~ 63 (223)
T TIGR01768 15 EADEIAKAAAESGTDAILIGGSQG----VTYEKTDTLIEALRRY-GLPIIL--FPS 63 (223)
T ss_pred ccHHHHHHHHhcCCCEEEEcCCCc----ccHHHHHHHHHHHhcc-CCCEEE--eCC
Confidence 456788899999999999986442 3578888888988864 499999 665
No 431
>COG0434 SgcQ Predicted TIM-barrel enzyme [General function prediction only]
Probab=32.60 E-value=97 Score=33.79 Aligned_cols=50 Identities=12% Similarity=0.193 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHcCCCEEEEcC----CCCCCCCCCHHHHHHHHHHHHhc----CCCCEEEE
Q psy11975 527 RATIDLTQKAAKAGANAALILC----PYYFQKKMTEDLIYEHFISVADN----SPIPVIIY 579 (786)
Q Consensus 527 ~EAIELAr~Ae~aGADAVmViP----PyY~kps~S~eeLv~YFraIAeA----tdLPIiLY 579 (786)
+-|++-|+..++.|+||||+-. ||+-.. ..+.+.++..|++. +.+|+.+-
T Consensus 34 d~A~~dA~~leegG~DavivEN~gD~Pf~k~v---~~~tvaaMa~iv~~v~r~v~iPvGvN 91 (263)
T COG0434 34 DRAVRDAAALEEGGVDAVIVENYGDAPFLKDV---GPETVAAMAVIVREVVREVSIPVGVN 91 (263)
T ss_pred HHHHHHHHHHHhCCCcEEEEeccCCCCCCCCC---ChHHHHHHHHHHHHHHHhccccceee
Confidence 4456667888999999999976 655432 34455566555544 47888653
No 432
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=32.55 E-value=1.5e+02 Score=31.51 Aligned_cols=58 Identities=19% Similarity=0.148 Sum_probs=45.8
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHhcC--CCCEEEEe
Q psy11975 523 HTTTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNS--PIPVIIYN 580 (786)
Q Consensus 523 a~ST~EAIELAr~Ae~aGADAVmViPPyY~kps~S~eeLv~YFraIAeAt--dLPIiLYN 580 (786)
..+.+...+++++..+.|++++++.--.--...++.+|-.+..+.+++++ .+||++--
T Consensus 14 ~iD~~~~~~~i~~l~~~Gv~gi~~~GstGE~~~ls~~Er~~l~~~~~~~~~~~~~vi~gv 73 (281)
T cd00408 14 EVDLDALRRLVEFLIEAGVDGLVVLGTTGEAPTLTDEERKEVIEAVVEAVAGRVPVIAGV 73 (281)
T ss_pred CcCHHHHHHHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHhCCCCeEEEec
Confidence 66888999999999999999999887543333356999889998888877 48877543
No 433
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=32.53 E-value=1.3e+02 Score=33.19 Aligned_cols=77 Identities=13% Similarity=0.149 Sum_probs=59.3
Q ss_pred EEeCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHhcCCCCEEEEeCCCCcCCccCHHHHHHH
Q psy11975 518 LKPQKHTTTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKL 597 (786)
Q Consensus 518 IaGVGa~ST~EAIELAr~Ae~aGADAVmViPPyY~kps~S~eeLv~YFraIAeAtdLPIiLYNiP~~TGv~LSpelL~rL 597 (786)
|......+.+.+....+.|++.++-.|+-+.|--.+.. .-+.+..+.+.+|+.+++||.|.--= |. +.+.+.+-
T Consensus 18 V~AfN~~n~e~~~avi~AAee~~sPvIlq~s~~~~~~~-~~~~~~~~~~~~a~~~~VPValHLDH---g~--~~e~i~~a 91 (282)
T TIGR01858 18 VPAFNIHNLETIQAVVETAAEMRSPVILAGTPGTFKHA-GTEYIVALCSAASTTYNMPLALHLDH---HE--SLDDIRQK 91 (282)
T ss_pred EEEEEeCCHHHHHHHHHHHHHhCCCEEEEeCccHHhhC-CHHHHHHHHHHHHHHCCCCEEEECCC---CC--CHHHHHHH
Confidence 44555668899999999999999999999988665542 36779999999999999999987531 22 46777666
Q ss_pred HhC
Q psy11975 598 AHH 600 (786)
Q Consensus 598 Aei 600 (786)
.+.
T Consensus 92 i~~ 94 (282)
T TIGR01858 92 VHA 94 (282)
T ss_pred HHc
Confidence 654
No 434
>COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]
Probab=32.53 E-value=2e+02 Score=32.73 Aligned_cols=90 Identities=17% Similarity=0.135 Sum_probs=62.7
Q ss_pred EEEeCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCC--------------CCHH--HHHHHHHHHHhcC--CCCEEE
Q psy11975 517 LLKPQKHTTTRATIDLTQKAAKAGANAALILCPYYFQKK--------------MTED--LIYEHFISVADNS--PIPVII 578 (786)
Q Consensus 517 VIaGVGa~ST~EAIELAr~Ae~aGADAVmViPPyY~kps--------------~S~e--eLv~YFraIAeAt--dLPIiL 578 (786)
||+..|+ .+++-++-.|---.-|-|++..|+|.... +..+ +..-=.++|.++. +.-+++
T Consensus 92 iivt~Ga---~~al~~~~~a~~~pGDeVlip~P~Y~~y~~~~~~~gg~~v~v~l~~~~~~f~~d~~~l~~~i~~ktk~i~ 168 (393)
T COG0436 92 IIVTAGA---KEALFLAFLALLNPGDEVLIPDPGYPSYEAAVKLAGGKPVPVPLDEEENGFKPDLEDLEAAITPKTKAII 168 (393)
T ss_pred EEEeCCH---HHHHHHHHHHhcCCCCEEEEeCCCCcCHHHHHHhcCCEEEEEeCCcCccCCcCCHHHHHhhcCccceEEE
Confidence 7777666 78888888887666788999999984321 0011 1111134444443 367999
Q ss_pred EeCCCC-cCCccCHHHHHHHHh---CCCEEEEEeC
Q psy11975 579 YNNTFV-TNIDISVDTLVKLAH---HENIRGVKDT 609 (786)
Q Consensus 579 YNiP~~-TGv~LSpelL~rLAe---iPNVVGIKDS 609 (786)
-|+|.. ||..++.+.+.+|++ --++.=|=|+
T Consensus 169 ln~P~NPTGav~~~~~l~~i~~~a~~~~i~ii~DE 203 (393)
T COG0436 169 LNSPNNPTGAVYSKEELKAIVELAREHDIIIISDE 203 (393)
T ss_pred EeCCCCCcCcCCCHHHHHHHHHHHHHcCeEEEEeh
Confidence 999986 999999999988874 3678878887
No 435
>COG2876 AroA 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism]
Probab=32.32 E-value=1e+02 Score=34.02 Aligned_cols=75 Identities=20% Similarity=0.228 Sum_probs=53.4
Q ss_pred CeEEE-eCCCCCHHHHHHHHHHHHHcCCCEEEEc------CCCCCCCCCCHHHHHHHHHHHHhcCCCCEEEEeCCCCcCC
Q psy11975 515 ADLLK-PQKHTTTRATIDLTQKAAKAGANAALIL------CPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNI 587 (786)
Q Consensus 515 VPVIa-GVGa~ST~EAIELAr~Ae~aGADAVmVi------PPyY~kps~S~eeLv~YFraIAeAtdLPIiLYNiP~~TGv 587 (786)
.-||+ .++-.+-+..++.|+..+++||+++--- .||-|.-- .++-+.+.+++++.+++|++-=-
T Consensus 46 ~~viAGPCsvEs~E~i~~~A~~vk~~Ga~~lRGgafKPRTSPYsFQGl--ge~gL~~l~~a~~~~Gl~vvtEv------- 116 (286)
T COG2876 46 LRVIAGPCSVESEEQVRETAESVKAAGAKALRGGAFKPRTSPYSFQGL--GEEGLKLLKRAADETGLPVVTEV------- 116 (286)
T ss_pred eEEEecCcccCCHHHHHHHHHHHHHcchhhccCCcCCCCCCccccccc--CHHHHHHHHHHHHHcCCeeEEEe-------
Confidence 45666 4556788888999999999999987543 36655432 45667899999999999998643
Q ss_pred ccCHHHHHHHHh
Q psy11975 588 DISVDTLVKLAH 599 (786)
Q Consensus 588 ~LSpelL~rLAe 599 (786)
+++..+...++
T Consensus 117 -m~~~~~e~~~~ 127 (286)
T COG2876 117 -MDVRDVEAAAE 127 (286)
T ss_pred -cCHHHHHHHHh
Confidence 44555554443
No 436
>TIGR03586 PseI pseudaminic acid synthase.
Probab=32.30 E-value=56 Score=36.65 Aligned_cols=31 Identities=19% Similarity=0.342 Sum_probs=0.0
Q ss_pred CCeEEE--eCCCC-CHHHHHHHHHHHHHcCCCEE
Q psy11975 514 QADLLK--PQKHT-TTRATIDLTQKAAKAGANAA 544 (786)
Q Consensus 514 RVPVIa--GVGa~-ST~EAIELAr~Ae~aGADAV 544 (786)
++-||+ |+.++ +.+.|.++++.|+++|||+|
T Consensus 1 ~~~iIAEiG~NH~G~~~~A~~lI~~A~~aGAdav 34 (327)
T TIGR03586 1 PPFIIAELSANHNGSLERALAMIEAAKAAGADAI 34 (327)
T ss_pred CCEEEEEECCCCCChHHHHHHHHHHHHHhCCCEE
No 437
>PF01068 DNA_ligase_A_M: ATP dependent DNA ligase domain; InterPro: IPR012310 DNA ligase (polydeoxyribonucleotide synthase) is the enzyme that joins two DNA fragments by catalysing the formation of an internucleotide ester bond between phosphate and deoxyribose. It is active during DNA replication, DNA repair and DNA recombination. There are two forms of DNA ligase, one requires ATP (6.5.1.1 from EC), the other NAD (6.5.1.2 from EC), the latter being restricted to eubacteria. Eukaryotic, archaebacterial, viral and some eubacterial DNA ligases are ATP-dependent. The first step in the ligation reaction is the formation of a covalent enzyme-AMP complex. The co-factor ATP is cleaved to pyrophosphate and AMP, with the AMP being covalently joined to a highly conserved lysine residue in the active site of the ligase. The activated AMP residue is then transferred to the 5'phosphate of the nick, before the nick is sealed by phosphodiester-bond formation and AMP elimination [,]. Vertebrate cells encode three well-characterised DNA ligases (DNA ligases I, III and IV), all of which are related in structure and sequence. With the exception of the atypically small PBCV-1 viral enzyme, two regions of primary sequence are common to all members of the family. The catalytic region comprises six conserved sequence motifs (I, III, IIIa, IV, V-VI), motif I includes the lysine residue that is adenylated in the first step of the ligation reaction. The function of the second, less well-conserved region is unknown. When folded, each protein comprises of two distinct sub-domains: a large amino-terminal sub-domain ('domain 1') and a smaller carboxy-terminal sub-domain ('domain 2'). The ATP-binding site of the enzyme lies in the cleft between the two sub-domains. Domain 1 consists of two antiparallel beta sheets flanked by alpha helices, whereas domain 2 consists of a five-stranded beta barrel and a single alpha helix, which form the oligonucleotide-binding fold [, ]. This domain belongs to a more diverse superfamily, including catalytic domain of the mRNA capping enzyme (IPR001339 from INTERPRO) and NAD-dependent DNA ligase (IPR001679 from INTERPRO) []. ; GO: 0003910 DNA ligase (ATP) activity, 0005524 ATP binding, 0006281 DNA repair, 0006310 DNA recombination; PDB: 3RR5_A 1X9N_A 2CFM_A 3QWU_B 3GDE_A 2Q2U_C 2Q2T_A 1FVI_A 1P8L_A 2VUG_A ....
Probab=32.11 E-value=95 Score=31.09 Aligned_cols=56 Identities=14% Similarity=0.213 Sum_probs=43.5
Q ss_pred CCCCHHHHHHHHHhCCCCCccCCCccccccCCCCCCCCCCCCCccccCCCCeEEEeCCCCCHHHHHHHHHHHHHcCCCEE
Q psy11975 465 TSMPIQKRKSLLRKFPLWPELEPSTSELKRSDRPMSVGPRSVRPSEREWQADLLKPQKHTTTRATIDLTQKAAKAGANAA 544 (786)
Q Consensus 465 ~sLT~dER~~Lle~~~~wve~~a~~~e~~~~~~~~~~~~r~v~veevaGRVPVIaGVGa~ST~EAIELAr~Ae~aGADAV 544 (786)
..++.+||+++++. ... ...+++.++-..-..+.+++.++.+.+.+.|..|+
T Consensus 129 ~~~p~~eR~~~L~~---~~~-------------------------~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~EG~ 180 (202)
T PF01068_consen 129 LDLPYEERRELLEE---LLE-------------------------PPPPRIRIVESYVVNSKEELEELFEEAIDQGFEGL 180 (202)
T ss_dssp TTSCHHHHHHHHHH---HBG--------------------------BTSSEEEEEEEEESSHHHHHHHHHHHHHTTSSEE
T ss_pred eeccHHHHHHHHHH---hhc-------------------------cCCCceeEeeeecCCCHHHHHHHHHHHHHcCCceE
Confidence 56799999999998 331 12245556656666788999999999999999999
Q ss_pred EEcC
Q psy11975 545 LILC 548 (786)
Q Consensus 545 mViP 548 (786)
|+=.
T Consensus 181 v~K~ 184 (202)
T PF01068_consen 181 VLKD 184 (202)
T ss_dssp EEEE
T ss_pred EEEC
Confidence 9954
No 438
>PLN02535 glycolate oxidase
Probab=32.10 E-value=5.1e+02 Score=29.75 Aligned_cols=29 Identities=17% Similarity=0.169 Sum_probs=22.1
Q ss_pred CCeEEE-eCCCCCHHHHHHHHHHHHHcCCCEEEEcC
Q psy11975 514 QADLLK-PQKHTTTRATIDLTQKAAKAGANAALILC 548 (786)
Q Consensus 514 RVPVIa-GVGa~ST~EAIELAr~Ae~aGADAVmViP 548 (786)
++|||+ ||. +.++ |+.|.++|+|+|.+..
T Consensus 223 ~~PvivKgV~--~~~d----A~~a~~~GvD~I~vsn 252 (364)
T PLN02535 223 NLPILIKGVL--TRED----AIKAVEVGVAGIIVSN 252 (364)
T ss_pred CCCEEEecCC--CHHH----HHHHHhcCCCEEEEeC
Confidence 468888 673 3444 7888999999999875
No 439
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=32.01 E-value=6.2e+02 Score=29.03 Aligned_cols=142 Identities=10% Similarity=0.027 Sum_probs=82.2
Q ss_pred CCCCHHHHHHHHHhCCCCCccCCCccccccCCCCCCCCCCCCCccccCCCCeEEEeCCCCCHHHHHHHHHHHHH--cCCC
Q psy11975 465 TSMPIQKRKSLLRKFPLWPELEPSTSELKRSDRPMSVGPRSVRPSEREWQADLLKPQKHTTTRATIDLTQKAAK--AGAN 542 (786)
Q Consensus 465 ~sLT~dER~~Lle~~~~wve~~a~~~e~~~~~~~~~~~~r~v~veevaGRVPVIaGVGa~ST~EAIELAr~Ae~--aGAD 542 (786)
-.+++||+.+-++. ... +..+++-|-+|+.. +-.+.++...+ +|+|
T Consensus 77 k~~~~e~~~~fv~~---~~~-------------------------~~~~~~~vavG~~~----~d~er~~~L~~~~~g~D 124 (346)
T PRK05096 77 KHYSVEEWAAFVNN---SSA-------------------------DVLKHVMVSTGTSD----ADFEKTKQILALSPALN 124 (346)
T ss_pred cCCCHHHHHHHHHh---ccc-------------------------cccceEEEEecCCH----HHHHHHHHHHhcCCCCC
Confidence 45788998888776 211 11234444444433 44555555555 5999
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHHHHHHhcC-CCCEEEEeCCCCcCCccCHHHHHHHHhCCCEEEEEeC------------
Q psy11975 543 AALILCPYYFQKKMTEDLIYEHFISVADNS-PIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKDT------------ 609 (786)
Q Consensus 543 AVmViPPyY~kps~S~eeLv~YFraIAeAt-dLPIiLYNiP~~TGv~LSpelL~rLAeiPNVVGIKDS------------ 609 (786)
.|.+=.-.- ..+.+++..+.|-+.. +++||.=| -.+++....|.+- ..-++|-.
T Consensus 125 ~iviD~AhG-----hs~~~i~~ik~ik~~~P~~~vIaGN-------V~T~e~a~~Li~a-GAD~vKVGIGpGSiCtTr~v 191 (346)
T PRK05096 125 FICIDVANG-----YSEHFVQFVAKAREAWPDKTICAGN-------VVTGEMVEELILS-GADIVKVGIGPGSVCTTRVK 191 (346)
T ss_pred EEEEECCCC-----cHHHHHHHHHHHHHhCCCCcEEEec-------ccCHHHHHHHHHc-CCCEEEEcccCCccccCccc
Confidence 998876542 2567788888887776 58887665 4567888888642 23344422
Q ss_pred ---CHHHHHHH---HhhcCCCCEEEEe-CC---cchhhhhhccCCccccccc
Q psy11975 610 ---DNIKLANM---ANQTKDLNFSVFA-GS---AGYLLSGLLVGCAGGINAL 651 (786)
Q Consensus 610 ---Dl~ri~~l---l~~~~~~df~Vf~-G~---DelLL~aL~~GAdG~Isg~ 651 (786)
-..++.++ .+.....+..|+. |. .+.+.-+|.+|++.+|.|.
T Consensus 192 tGvG~PQltAV~~~a~~a~~~gvpiIADGGi~~sGDI~KAlaaGAd~VMlGs 243 (346)
T PRK05096 192 TGVGYPQLSAVIECADAAHGLGGQIVSDGGCTVPGDVAKAFGGGADFVMLGG 243 (346)
T ss_pred cccChhHHHHHHHHHHHHHHcCCCEEecCCcccccHHHHHHHcCCCEEEeCh
Confidence 12333333 2211122333332 21 1236678999999998885
No 440
>TIGR02637 RhaS rhamnose ABC transporter, rhamnose-binding protein. This sugar-binding component of ABC transporter complexes is found in rhamnose catabolism operon contexts. Mutation of this gene in Rhizobium leguminosarum abolishes rhamnose transport and prevents growth on rhamnose as a carbon source.
Probab=31.94 E-value=1.9e+02 Score=30.39 Aligned_cols=55 Identities=15% Similarity=0.189 Sum_probs=40.5
Q ss_pred eCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHhcCCCCEEEEeCC
Q psy11975 520 PQKHTTTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNT 582 (786)
Q Consensus 520 GVGa~ST~EAIELAr~Ae~aGADAVmViPPyY~kps~S~eeLv~YFraIAeAtdLPIiLYNiP 582 (786)
+....+.+..++..+.+.+.|+|++++.+. . .+.+...++.+. +.++|+++++.+
T Consensus 36 ~~~~~d~~~q~~~i~~l~~~~vdgiIi~~~-----~--~~~~~~~l~~~~-~~giPvV~~~~~ 90 (302)
T TIGR02637 36 GPTGTTAEGQIEVVNSLIAQKVDAIAISAN-----D--PDALVPALKKAM-KRGIKVVTWDSG 90 (302)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCEEEEeCC-----C--hHHHHHHHHHHH-HCCCEEEEeCCC
Confidence 445567888889999999999999999752 1 344555565544 468999999864
No 441
>PF10113 Fibrillarin_2: Fibrillarin-like archaeal protein; InterPro: IPR016760 Members of this protein family are HmdC, whose gene regularly occurs in the context of genes for HmdA (5,10-methenyltetrahydromethanopterin hydrogenase) and the radical SAM protein HmdB involved in biosynthesis of the HmdA cofactor. Bioinformatics suggests this protein, a homologue of eukaryotic fibrillarin, may be involved in biosynthesis of the guanylyl pyridinol cofactor in HmdA.
Probab=31.76 E-value=2e+02 Score=33.79 Aligned_cols=53 Identities=9% Similarity=0.042 Sum_probs=34.7
Q ss_pred CeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHhc
Q psy11975 515 ADLLKPQKHTTTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADN 571 (786)
Q Consensus 515 VPVIaGVGa~ST~EAIELAr~Ae~aGADAVmViPPyY~kps~S~eeLv~YFraIAeA 571 (786)
+.-|..||. ..+|-|.=.+.+.++|+|.+++---.|... .+-+.+|-++||.+
T Consensus 222 veaI~~vGD-GyddLI~G~~a~id~~vDvfVvEGgPFN~a---~dRl~aFakaVa~s 274 (505)
T PF10113_consen 222 VEAIMHVGD-GYDDLITGLKACIDMGVDVFVVEGGPFNRA---KDRLKAFAKAVAAS 274 (505)
T ss_pred ceEEEEecC-ChHHHHHHHHHHHhcCCcEEEEeCCCcccc---hhHHHHHHHHHHHh
Confidence 345666665 567777777777777777777766555543 46667777776643
No 442
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=31.66 E-value=1.5e+02 Score=31.88 Aligned_cols=58 Identities=16% Similarity=0.077 Sum_probs=44.7
Q ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHhcC--CCCEEEE
Q psy11975 522 KHTTTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNS--PIPVIIY 579 (786)
Q Consensus 522 Ga~ST~EAIELAr~Ae~aGADAVmViPPyY~kps~S~eeLv~YFraIAeAt--dLPIiLY 579 (786)
+..+.+...+++++..+.|++++++.--.--.+.++.+|-.+.++.+.+.+ .+||+.-
T Consensus 14 g~iD~~~~~~~i~~l~~~Gv~Gi~~~GstGE~~~Ls~~Er~~~~~~~~~~~~~~~~vi~g 73 (285)
T TIGR00674 14 GSVDFAALEKLIDFQIENGTDAIVVVGTTGESPTLSHEEHKKVIEFVVDLVNGRVPVIAG 73 (285)
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhCCCCeEEEe
Confidence 457889999999999999999999865432223356999889888888876 3787754
No 443
>TIGR01093 aroD 3-dehydroquinate dehydratase, type I. Type II 3-dehydroquinate dehydratase, designated AroQ, is described by TIGR01088.
Probab=31.65 E-value=1.9e+02 Score=30.27 Aligned_cols=70 Identities=13% Similarity=0.123 Sum_probs=46.2
Q ss_pred cCCCCeEEEeCC----CCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHhcCCCCEEEEeCC
Q psy11975 511 REWQADLLKPQK----HTTTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNT 582 (786)
Q Consensus 511 vaGRVPVIaGVG----a~ST~EAIELAr~Ae~aGADAVmViPPyY~kps~S~eeLv~YFraIAeAtdLPIiLYNiP 582 (786)
..++..||+.-- ..+.++.+++.+++++.|||-+=+....-... +.-.+..+...+.+..+.|++.|++-
T Consensus 115 ~~~~~kvI~S~H~f~~tp~~~~l~~~~~~~~~~gaDivKia~~a~~~~--D~~~ll~~~~~~~~~~~~p~i~~~MG 188 (228)
T TIGR01093 115 KKGGTKIIMSYHDFQKTPSWEEIVERLEKALSYGADIVKIAVMANSKE--DVLTLLEITNKVDEHADVPLITMSMG 188 (228)
T ss_pred HHCCCEEEEeccCCCCCCCHHHHHHHHHHHHHhCCCEEEEEeccCCHH--HHHHHHHHHHHHHhcCCCCEEEEeCC
Confidence 357788988542 45678889999999999999885543322111 13345555555544456899999974
No 444
>PF09465 LBR_tudor: Lamin-B receptor of TUDOR domain; InterPro: IPR019023 The Lamin-B receptor is a chromatin and lamin binding protein in the inner nuclear membrane. It is one of the integral inner nuclear envelope membrane proteins responsible for targeting nuclear membranes to chromatin, being a downstream effector of Ran, a small Ras-like nuclear GTPase which regulates NE assembly. Lamin-B receptor interacts with importin beta, a Ran-binding protein, thereby directly contributing to the fusion of membrane vesicles and the formation of the nuclear envelope []. ; PDB: 2L8D_A 2DIG_A.
Probab=31.63 E-value=43 Score=28.60 Aligned_cols=41 Identities=22% Similarity=0.212 Sum_probs=28.9
Q ss_pred CCCCCCCceEEEecccCCCC-CccccCCCCCCCcEEEEEeCCC
Q psy11975 354 LLGLAEGDLVWGSVKGYPSW-PGKLISPAPTQGRVWVKWFGMS 395 (786)
Q Consensus 354 ~~~f~vGDLVWaKvkG~PwW-Pg~V~~~~~~~g~~~V~fFG~~ 395 (786)
.++|..|+.|=++=.|-.-| .|+|.+-+.....+.|.| -|+
T Consensus 3 ~~k~~~Ge~V~~rWP~s~lYYe~kV~~~d~~~~~y~V~Y-~DG 44 (55)
T PF09465_consen 3 SRKFAIGEVVMVRWPGSSLYYEGKVLSYDSKSDRYTVLY-EDG 44 (55)
T ss_dssp SSSS-SS-EEEEE-TTTS-EEEEEEEEEETTTTEEEEEE-TTS
T ss_pred cccccCCCEEEEECCCCCcEEEEEEEEecccCceEEEEE-cCC
Confidence 36899999999988888877 889988666567788886 445
No 445
>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF. A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.
Probab=31.52 E-value=2.3e+02 Score=29.81 Aligned_cols=120 Identities=11% Similarity=0.080 Sum_probs=66.2
Q ss_pred HHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHhcCCCCEEEEeCCCCcCCccCHHHHHHHH-------hC--
Q psy11975 530 IDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLA-------HH-- 600 (786)
Q Consensus 530 IELAr~Ae~aGADAVmViPPyY~kps~S~eeLv~YFraIAeAtdLPIiLYNiP~~TGv~LSpelL~rLA-------ei-- 600 (786)
++-++.|++.|||.|=+..-+... ++|+. +..++.+.+..++||.+-=-|....+.++.+.+..+. +.
T Consensus 10 ~~~a~~A~~~GAdRiELc~~l~~G-GlTPS--~g~i~~~~~~~~ipv~vMIRpr~gdF~Ys~~E~~~M~~dI~~~~~~Ga 86 (201)
T PF03932_consen 10 LEDALAAEAGGADRIELCSNLEVG-GLTPS--LGLIRQAREAVDIPVHVMIRPRGGDFVYSDEEIEIMKEDIRMLRELGA 86 (201)
T ss_dssp HHHHHHHHHTT-SEEEEEBTGGGT--B-----HHHHHHHHHHTTSEEEEE--SSSS-S---HHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHcCCCEEEECCCccCC-CcCcC--HHHHHHHHhhcCCceEEEECCCCCCccCCHHHHHHHHHHHHHHHHcCC
Confidence 566788999999999887644321 11121 2445555557889999888886556778887766553 22
Q ss_pred -CCEEEEEeC----CHHHHHHHHhhcCCCCEEEEeCCcch-----hhhh-hccCCcccccccc
Q psy11975 601 -ENIRGVKDT----DNIKLANMANQTKDLNFSVFAGSAGY-----LLSG-LLVGCAGGINALS 652 (786)
Q Consensus 601 -PNVVGIKDS----Dl~ri~~ll~~~~~~df~Vf~G~Del-----LL~a-L~~GAdG~Isg~a 652 (786)
.-|+|+=+. |...+.++++...+-++.+=-..|.. .++. ..+|.+.++++.+
T Consensus 87 dG~VfG~L~~dg~iD~~~~~~Li~~a~~~~~tFHRAfD~~~d~~~al~~L~~lG~~rVLTSGg 149 (201)
T PF03932_consen 87 DGFVFGALTEDGEIDEEALEELIEAAGGMPVTFHRAFDEVPDPEEALEQLIELGFDRVLTSGG 149 (201)
T ss_dssp SEEEE--BETTSSB-HHHHHHHHHHHTTSEEEE-GGGGGSSTHHHHHHHHHHHT-SEEEESTT
T ss_pred CeeEEEeECCCCCcCHHHHHHHHHhcCCCeEEEeCcHHHhCCHHHHHHHHHhcCCCEEECCCC
Confidence 346666444 88999999885444445554455543 2222 3578888866543
No 446
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=31.36 E-value=1.3e+02 Score=33.14 Aligned_cols=77 Identities=16% Similarity=0.093 Sum_probs=58.0
Q ss_pred EEeCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHhcCCCCEEEEeCCCCcCCccCHHHHHHH
Q psy11975 518 LKPQKHTTTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKL 597 (786)
Q Consensus 518 IaGVGa~ST~EAIELAr~Ae~aGADAVmViPPyY~kps~S~eeLv~YFraIAeAtdLPIiLYNiP~~TGv~LSpelL~rL 597 (786)
|......+.+.+....+.|++.++..++-+.|.-.+.. ..+.+..+.+.+|+.+++||.|.-- -|. +.+.+.+-
T Consensus 20 V~AfN~~n~e~~~avi~AAee~~sPvIiq~~~~~~~~~-g~~~~~~~~~~~a~~~~VPValHLD---H~~--~~e~i~~a 93 (284)
T PRK12737 20 VPAFNIHNLETLQVVVETAAELRSPVILAGTPGTFSYA-GTDYIVAIAEVAARKYNIPLALHLD---HHE--DLDDIKKK 93 (284)
T ss_pred EEEEEeCCHHHHHHHHHHHHHhCCCEEEEcCccHHhhC-CHHHHHHHHHHHHHHCCCCEEEECC---CCC--CHHHHHHH
Confidence 34455668899999999999999999999988665532 3677888999999999999998753 122 45677666
Q ss_pred HhC
Q psy11975 598 AHH 600 (786)
Q Consensus 598 Aei 600 (786)
.+.
T Consensus 94 i~~ 96 (284)
T PRK12737 94 VRA 96 (284)
T ss_pred HHc
Confidence 654
No 447
>cd06334 PBP1_ABC_ligand_binding_like_1 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=31.31 E-value=7.4e+02 Score=27.24 Aligned_cols=130 Identities=10% Similarity=-0.078 Sum_probs=76.4
Q ss_pred CeEEEeCCCCCHHHHHHHHHHHHHcC-----CCEEEEcCCCCCCCCCCHHHHHHHHHHHHhcCCCCEEEEeCCCCcCCcc
Q psy11975 515 ADLLKPQKHTTTRATIDLTQKAAKAG-----ANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDI 589 (786)
Q Consensus 515 VPVIaGVGa~ST~EAIELAr~Ae~aG-----ADAVmViPPyY~kps~S~eeLv~YFraIAeAtdLPIiLYNiP~~TGv~L 589 (786)
.+-+..+......++..+++.+.+.+ +.-|.++.+-+- . -.++.+.|++.+++.++.|+........-.++
T Consensus 109 ~~~~Fr~~~~~~~~~~~l~~~~~~~~~~~~~~~kvaiv~~~~~-~---g~~~~~~~~~~~~~~G~~vv~~~~~~~~~~D~ 184 (351)
T cd06334 109 FPYNFPVGPTYSDQARALVQYIAEQEGGKLKGKKIALVYHDSP-F---GKEPIEALKALAEKLGFEVVLEPVPPPGPNDQ 184 (351)
T ss_pred CCeeeeCCCCHHHHHHHHHHHHHHhcccCCCCCeEEEEeCCCc-c---chhhHHHHHHHHHHcCCeeeeeccCCCCcccH
Confidence 35566666667778888899887765 888888865432 2 35577889999988898887655433333566
Q ss_pred CHHHHHHHH-hCCCEEEEEeC--CHHHHHHHHhhcCCCCEEEEeC---CcchhhhhhccCCcccccc
Q psy11975 590 SVDTLVKLA-HHENIRGVKDT--DNIKLANMANQTKDLNFSVFAG---SAGYLLSGLLVGCAGGINA 650 (786)
Q Consensus 590 SpelL~rLA-eiPNVVGIKDS--Dl~ri~~ll~~~~~~df~Vf~G---~DelLL~aL~~GAdG~Isg 650 (786)
++. +.+|. .-|.++-+=.. +...+.+.+++ .+-+..++.+ .+..++..+-.-+.|++..
T Consensus 185 ~~~-v~~i~~~~pd~V~~~~~~~~~~~~~~~~~~-~G~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~ 249 (351)
T cd06334 185 KAQ-WLQIRRSGPDYVILWGWGVMNPVAIKEAKR-VGLDDKFIGNWWSGDEEDVKPAGDAAKGYKGV 249 (351)
T ss_pred HHH-HHHHHHcCCCEEEEecccchHHHHHHHHHH-cCCCceEEEeeccCcHHHHHHhhhhhcCcEEe
Confidence 544 45554 46777766544 55554444442 2333344432 2233443332235666544
No 448
>PLN02428 lipoic acid synthase
Probab=31.17 E-value=2.3e+02 Score=32.23 Aligned_cols=30 Identities=10% Similarity=0.174 Sum_probs=20.1
Q ss_pred eEEEeCCCCCHHHHHHHHHHHHHcCCCEEEE
Q psy11975 516 DLLKPQKHTTTRATIDLTQKAAKAGANAALI 546 (786)
Q Consensus 516 PVIaGVGa~ST~EAIELAr~Ae~aGADAVmV 546 (786)
-+|+|. +.+.+|.++.++.+.++|+|-+.+
T Consensus 252 g~MvGL-GET~Edv~e~l~~Lrelgvd~vti 281 (349)
T PLN02428 252 SIMLGL-GETDEEVVQTMEDLRAAGVDVVTF 281 (349)
T ss_pred eEEEec-CCCHHHHHHHHHHHHHcCCCEEee
Confidence 466677 356777777777777777776554
No 449
>cd01539 PBP1_GGBP Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. GGBP is a member of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic GGBP is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=30.96 E-value=2.4e+02 Score=30.01 Aligned_cols=61 Identities=11% Similarity=0.117 Sum_probs=43.1
Q ss_pred CCeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHhcCCCCEEEEeCC
Q psy11975 514 QADLLKPQKHTTTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNT 582 (786)
Q Consensus 514 RVPVIaGVGa~ST~EAIELAr~Ae~aGADAVmViPPyY~kps~S~eeLv~YFraIAeAtdLPIiLYNiP 582 (786)
.+.+++..+..+.+..++..+.+.+.++|++++.+.. .+.+...++.+ .+.++||++.|..
T Consensus 31 g~~~~~~~~~~~~~~q~~~i~~l~~~~vdgiii~~~~-------~~~~~~~~~~~-~~~giPvV~~~~~ 91 (303)
T cd01539 31 KVEFTFYDAKNNQSTQNEQIDTALAKGVDLLAVNLVD-------PTAAQTVINKA-KQKNIPVIFFNRE 91 (303)
T ss_pred CeeEEEecCCCCHHHHHHHHHHHHHcCCCEEEEecCc-------hhhHHHHHHHH-HHCCCCEEEeCCC
Confidence 3556665666677778888888899999999998632 22234455554 4578999999864
No 450
>cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).
Probab=30.89 E-value=2.1e+02 Score=31.61 Aligned_cols=105 Identities=11% Similarity=-0.021 Sum_probs=68.8
Q ss_pred CCCeEEEeC-CCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHhcCCCCEEEEeCCCCcCCccCH
Q psy11975 513 WQADLLKPQ-KHTTTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISV 591 (786)
Q Consensus 513 GRVPVIaGV-Ga~ST~EAIELAr~Ae~aGADAVmViPPyY~kps~S~eeLv~YFraIAeAtdLPIiLYNiP~~TGv~LSp 591 (786)
..+++.+=+ ++.+.++++++++..++.|++.+ --|... . -++-++.|.+++++||++=. ...++
T Consensus 188 ~~~~l~vDaN~~~~~~~a~~~~~~l~~~~i~~i--EqP~~~--~-----~~~~~~~l~~~~~ipi~~dE------~~~~~ 252 (357)
T cd03316 188 PDVDLMVDANGRWDLAEAIRLARALEEYDLFWF--EEPVPP--D-----DLEGLARLRQATSVPIAAGE------NLYTR 252 (357)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhCccCCCeE--cCCCCc--c-----CHHHHHHHHHhCCCCEEecc------ccccH
Confidence 355666633 45789999999999998876543 345421 1 24556778888899988743 23568
Q ss_pred HHHHHHHh--CCCEEEEEeC---CHHHHHHHHhhcCCCCEEEEeCC
Q psy11975 592 DTLVKLAH--HENIRGVKDT---DNIKLANMANQTKDLNFSVFAGS 632 (786)
Q Consensus 592 elL~rLAe--iPNVVGIKDS---Dl~ri~~ll~~~~~~df~Vf~G~ 632 (786)
+.+.++.+ .-.++-+|-+ .+....++.+....-++.++.|.
T Consensus 253 ~~~~~~i~~~~~d~v~~k~~~~GGi~~~~~i~~~a~~~g~~~~~~~ 298 (357)
T cd03316 253 WEFRDLLEAGAVDIIQPDVTKVGGITEAKKIAALAEAHGVRVAPHG 298 (357)
T ss_pred HHHHHHHHhCCCCEEecCccccCCHHHHHHHHHHHHHcCCeEeccC
Confidence 88888875 5678888888 46555555442223456666664
No 451
>PLN02826 dihydroorotate dehydrogenase
Probab=30.73 E-value=1.6e+02 Score=34.03 Aligned_cols=42 Identities=14% Similarity=0.059 Sum_probs=33.5
Q ss_pred CCCeEEEeCC-CCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCC
Q psy11975 513 WQADLLKPQK-HTTTRATIDLTQKAAKAGANAALILCPYYFQK 554 (786)
Q Consensus 513 GRVPVIaGVG-a~ST~EAIELAr~Ae~aGADAVmViPPyY~kp 554 (786)
.++||++=++ ..+.++..++|+.|.+.|+|+|+++.-.+..+
T Consensus 261 ~~~Pv~vKlaPdl~~~di~~ia~~a~~~G~dGIi~~NTt~~r~ 303 (409)
T PLN02826 261 GPPPLLVKIAPDLSKEDLEDIAAVALALGIDGLIISNTTISRP 303 (409)
T ss_pred cCCceEEecCCCCCHHHHHHHHHHHHHcCCCEEEEEcccCcCc
Confidence 3689999766 44455789999999999999999998765443
No 452
>PTZ00372 endonuclease 4-like protein; Provisional
Probab=30.66 E-value=2.9e+02 Score=32.25 Aligned_cols=73 Identities=11% Similarity=0.080 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHH---HHHHHHHHhcC-CCCEEEEeCCCC-cCCccCHHHHHHHH
Q psy11975 526 TRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLI---YEHFISVADNS-PIPVIIYNNTFV-TNIDISVDTLVKLA 598 (786)
Q Consensus 526 T~EAIELAr~Ae~aGADAVmViPPyY~kps~S~eeL---v~YFraIAeAt-dLPIiLYNiP~~-TGv~LSpelL~rLA 598 (786)
.+..++-.+.|+++||+.|++-|.++......++++ .+.+.++.+.. ++.|+|=|.++. +-+..+.+.|.+|.
T Consensus 217 v~~~~~eL~rA~~LGa~~VV~HPGs~~~~~~~ee~i~~i~e~L~~~la~~~gV~IlLENmag~g~~lG~~~eeL~~Ii 294 (413)
T PTZ00372 217 YDAFLDDLQRCEQLGIKLYNFHPGSTVGQCSKEEGIKNIADCINKAHEETKSVIIVLENTAGQKNSVGSKFEDLRDII 294 (413)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCCcCCCCCCHHHHHHHHHHHHHHHHhCcCCCEEEEecCCCCCCcccCCHHHHHHHH
Confidence 344567788899999999999988864332113333 33333333333 577888887753 22334577777776
No 453
>cd07898 Adenylation_DNA_ligase Adenylation domain of ATP-dependent DNA Ligases. ATP-dependent polynucleotide ligases catalyze phosphodiester bond formation using nicked nucleic acid substrates with the high energy nucleotide of ATP as a cofactor in a three step reaction mechanism. DNA ligases play a vital role in the diverse processes of DNA replication, recombination and repair. ATP-dependent ligases are present in many organisms such as viruses, bacteriophages, eukarya, archaea and bacteria. Some organisms express a variety of different ligases which appear to be targeted to specific functions. ATP-dependent DNA ligases have a highly modular architecture consisting of a unique arrangement of two or more discrete domains including a DNA-binding domain, an adenylation (nucleotidyltransferase (NTase)) domain, and an oligonucleotide/oligosaccharide binding (OB)-fold domain. The adenylation domain binds ATP and contains many of the active-site residues. The adenylation and C-terminal OB-f
Probab=30.64 E-value=1.2e+02 Score=30.88 Aligned_cols=58 Identities=12% Similarity=0.110 Sum_probs=45.0
Q ss_pred CCCCHHHHHHHHHhCCCCCccCCCccccccCCCCCCCCCCCCCccccCCCCeEEEeCCCCCHHHHHHHHHHHHHcCCCEE
Q psy11975 465 TSMPIQKRKSLLRKFPLWPELEPSTSELKRSDRPMSVGPRSVRPSEREWQADLLKPQKHTTTRATIDLTQKAAKAGANAA 544 (786)
Q Consensus 465 ~sLT~dER~~Lle~~~~wve~~a~~~e~~~~~~~~~~~~r~v~veevaGRVPVIaGVGa~ST~EAIELAr~Ae~aGADAV 544 (786)
..++..||+++++. ++.. ..+++.++-.....+.++..++-+.+.+.|-.|+
T Consensus 126 ~~~p~~eR~~~L~~---~~~~-------------------------~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~EGi 177 (201)
T cd07898 126 LDRPLRERRQLLEE---LFVE-------------------------IPGRIRIAPALPVESAEELEAAFARARARGNEGL 177 (201)
T ss_pred hhCCHHHHHHHHHH---hhcC-------------------------CCCcEEEeeeEEcCCHHHHHHHHHHHHHcCCceE
Confidence 56899999999998 4321 1245556556666788899999999999999999
Q ss_pred EEcCCC
Q psy11975 545 LILCPY 550 (786)
Q Consensus 545 mViPPy 550 (786)
|+=.+-
T Consensus 178 m~K~~~ 183 (201)
T cd07898 178 MLKDPD 183 (201)
T ss_pred EEeCCC
Confidence 998853
No 454
>PF15057 DUF4537: Domain of unknown function (DUF4537)
Probab=30.39 E-value=62 Score=31.32 Aligned_cols=56 Identities=18% Similarity=0.208 Sum_probs=42.7
Q ss_pred CCCCCCCceEEEecc--cCCCCCccccCCC----CCCCcEEEEEeCCCCCccccccccccccccc
Q psy11975 354 LLGLAEGDLVWGSVK--GYPSWPGKLISPA----PTQGRVWVKWFGMSNEPLSEVEPATLKSLSQ 412 (786)
Q Consensus 354 ~~~f~vGDLVWaKvk--G~PwWPg~V~~~~----~~~g~~~V~fFG~~~~a~s~V~~k~LkpFsE 412 (786)
+..+.+||-|.|+.. ++.|=||+|..-+ ...+.+.|.||-.. ...|....+.....
T Consensus 53 ~~~L~~GD~VLA~~~~~~~~Y~Pg~V~~~~~~~~~~~~~~~V~f~ng~---~~~vp~~~~~~I~~ 114 (124)
T PF15057_consen 53 RHSLQVGDKVLAPWEPDDCRYGPGTVIAGPERRASEDKEYTVRFYNGK---TAKVPRGEVIWISP 114 (124)
T ss_pred cCcCCCCCEEEEecCcCCCEEeCEEEEECccccccCCceEEEEEECCC---CCccchhhEEECCH
Confidence 668999999999954 7778899999632 23478999999876 35567777777655
No 455
>cd06317 PBP1_ABC_sugar_binding_like_8 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Pperiplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=30.31 E-value=2e+02 Score=29.28 Aligned_cols=61 Identities=8% Similarity=0.099 Sum_probs=42.1
Q ss_pred CeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHhcCCCCEEEEeCCC
Q psy11975 515 ADLLKPQKHTTTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTF 583 (786)
Q Consensus 515 VPVIaGVGa~ST~EAIELAr~Ae~aGADAVmViPPyY~kps~S~eeLv~YFraIAeAtdLPIiLYNiP~ 583 (786)
..+++.....+.+..+++.+.+...++|++++.+.. . +...+..+.+ ...++|++++|.+.
T Consensus 31 ~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~~-~------~~~~~~l~~~-~~~~iPvV~~~~~~ 91 (275)
T cd06317 31 VEVIVLDANGDVARQAAQVEDLIAQKVDGIILWPTD-G------QAYIPGLRKA-KQAGIPVVITNSNI 91 (275)
T ss_pred CEEEEEcCCcCHHHHHHHHHHHHHcCCCEEEEecCC-c------cccHHHHHHH-HHCCCcEEEeCCCC
Confidence 445555566788888899999989999999887532 1 1122333443 45689999999764
No 456
>PF01487 DHquinase_I: Type I 3-dehydroquinase; InterPro: IPR001381 3-dehydroquinate dehydratase (4.2.1.10 from EC), or dehydroquinase, catalyzes the conversion of 3-dehydroquinate into 3-dehydroshikimate. It is the third step in the shikimate pathway for the biosynthesis of aromatic amino acids from chorismate. Two classes of dehydroquinases exist, known as types I and II. The best studied type I enzyme is from Escherichia coli (gene aroD) and related bacteria where it is a homodimeric protein. In fungi, dehydroquinase is part of a multifunctional enzyme which catalyzes five consecutive steps in the shikimate pathway. A histidine [] is involved in the catalytic mechanism.; GO: 0003855 3-dehydroquinate dehydratase activity; PDB: 2O7Q_A 2GPT_A 2O7S_A 1SFL_A 2OCZ_A 2OX1_C 1GQN_A 1QFE_B 1L9W_D 3L9C_A ....
Probab=30.29 E-value=1.5e+02 Score=30.82 Aligned_cols=75 Identities=17% Similarity=0.203 Sum_probs=53.0
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHhcCCCCEEEEeCCCCcC--CccCHHHHHHH
Q psy11975 521 QKHTTTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTN--IDISVDTLVKL 597 (786)
Q Consensus 521 VGa~ST~EAIELAr~Ae~aGADAVmViPPyY~kps~S~eeLv~YFraIAeAtdLPIiLYNiP~~TG--v~LSpelL~rL 597 (786)
+.+.+.++.++.++.+...|||+|=+--=++... +.+.+.+.+..|.+.+++|+++=--+..-| ..++.+...++
T Consensus 4 l~~~~~~~~~~~~~~~~~~~~D~vElRlD~l~~~--~~~~~~~~l~~lr~~~~~piI~T~R~~~eGG~~~~~~~~~~~l 80 (224)
T PF01487_consen 4 LTGSTLEELLAELEEAESSGADAVELRLDYLEND--SAEDISEQLAELRRSLDLPIIFTVRTKEEGGRFQGSEEEYLEL 80 (224)
T ss_dssp E--SSHHHHHHHHHHHHHTTTSEEEEEGGGSTTT--SHHHHHHHHHHHHHHCTSEEEEE--BGGGTSSBSS-HHHHHHH
T ss_pred eCCCCHHHHHHHHHHHHhcCCCEEEEEecccccc--ChHHHHHHHHHHHHhCCCCEEEEecccccCCCCcCCHHHHHHH
Confidence 4567889999999999998999999987776553 488899999999988899999766543322 23455444333
No 457
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=30.28 E-value=1.1e+02 Score=33.05 Aligned_cols=58 Identities=19% Similarity=0.129 Sum_probs=44.4
Q ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHhcC--CCCEEEE
Q psy11975 522 KHTTTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNS--PIPVIIY 579 (786)
Q Consensus 522 Ga~ST~EAIELAr~Ae~aGADAVmViPPyY~kps~S~eeLv~YFraIAeAt--dLPIiLY 579 (786)
+..+.+...+++++..+.|+|++++.--.--...+|.+|-.+.++.+.+.+ .+||++-
T Consensus 17 g~id~~~~~~~i~~l~~~Gv~gl~~~GstGE~~~Lt~~Er~~l~~~~~~~~~~~~~vi~g 76 (289)
T PF00701_consen 17 GSIDEDALKRLIDFLIEAGVDGLVVLGSTGEFYSLTDEERKELLEIVVEAAAGRVPVIAG 76 (289)
T ss_dssp SSB-HHHHHHHHHHHHHTTSSEEEESSTTTTGGGS-HHHHHHHHHHHHHHHTTSSEEEEE
T ss_pred cCcCHHHHHHHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHccCceEEEec
Confidence 456788999999999999999999987642222356999999999988876 4888874
No 458
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=30.19 E-value=58 Score=36.59 Aligned_cols=28 Identities=29% Similarity=0.411 Sum_probs=0.0
Q ss_pred EEE--eCCCC-CHHHHHHHHHHHHHcCCCEE
Q psy11975 517 LLK--PQKHT-TTRATIDLTQKAAKAGANAA 544 (786)
Q Consensus 517 VIa--GVGa~-ST~EAIELAr~Ae~aGADAV 544 (786)
||+ |+.++ +++-|.++.+.|+++|||||
T Consensus 3 iIAEig~NH~Gdl~~A~~lI~~A~~aGadaV 33 (329)
T TIGR03569 3 IIAEAGVNHNGSLELAKKLVDAAAEAGADAV 33 (329)
T ss_pred EEEEeCCCccCcHHHHHHHHHHHHHhCCCEE
No 459
>PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase
Probab=30.18 E-value=9e+02 Score=27.86 Aligned_cols=23 Identities=22% Similarity=0.315 Sum_probs=20.2
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEc
Q psy11975 525 TTRATIDLTQKAAKAGANAALIL 547 (786)
Q Consensus 525 ST~EAIELAr~Ae~aGADAVmVi 547 (786)
+-+.+.++.++|+++|+.+++++
T Consensus 133 Dr~~~~~li~RA~~aG~~alvlT 155 (367)
T PLN02493 133 NRNVVEQLVRRAERAGFKAIALT 155 (367)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEE
Confidence 45778899999999999999985
No 460
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=30.15 E-value=2.8e+02 Score=27.77 Aligned_cols=116 Identities=14% Similarity=0.178 Sum_probs=57.4
Q ss_pred CCCHHHHHHHHHHH-HHcCCCEEEEcC------------CCCC-CCCCCHHHHHHHHHHHHhcC--C--CCEEEEeCCCC
Q psy11975 523 HTTTRATIDLTQKA-AKAGANAALILC------------PYYF-QKKMTEDLIYEHFISVADNS--P--IPVIIYNNTFV 584 (786)
Q Consensus 523 a~ST~EAIELAr~A-e~aGADAVmViP------------PyY~-kps~S~eeLv~YFraIAeAt--d--LPIiLYNiP~~ 584 (786)
..+++++++.|+.+ .+-|+|.++.-- |.-. .. |. .++++++..+- + +-++-|.+..
T Consensus 16 ~~~~e~~v~~a~~~~~~~g~dViIsRG~ta~~lr~~~~iPVV~I~~--s~---~Dil~al~~a~~~~~~Iavv~~~~~~- 89 (176)
T PF06506_consen 16 EASLEEAVEEARQLLESEGADVIISRGGTAELLRKHVSIPVVEIPI--SG---FDILRALAKAKKYGPKIAVVGYPNII- 89 (176)
T ss_dssp E--HHHHHHHHHHHHTTTT-SEEEEEHHHHHHHHCC-SS-EEEE-----H---HHHHHHHHHCCCCTSEEEEEEESS-S-
T ss_pred EecHHHHHHHHHHhhHhcCCeEEEECCHHHHHHHHhCCCCEEEECC--CH---hHHHHHHHHHHhcCCcEEEEeccccc-
Confidence 34689999999999 889999887642 2111 12 23 34444444433 2 4444454321
Q ss_pred cCCccCHHHHHHHHhCCCEEEEEeCCHHHHHHHHhhcCCCCEEEEeCCcchhhhhhccCCccccc
Q psy11975 585 TNIDISVDTLVKLAHHENIRGVKDTDNIKLANMANQTKDLNFSVFAGSAGYLLSGLLVGCAGGIN 649 (786)
Q Consensus 585 TGv~LSpelL~rLAeiPNVVGIKDSDl~ri~~ll~~~~~~df~Vf~G~DelLL~aL~~GAdG~Is 649 (786)
...+.+.+|..+ +|.-+-..+...+..++.+....++.++.|.....-.+-..|..+.+-
T Consensus 90 ----~~~~~~~~ll~~-~i~~~~~~~~~e~~~~i~~~~~~G~~viVGg~~~~~~A~~~gl~~v~i 149 (176)
T PF06506_consen 90 ----PGLESIEELLGV-DIKIYPYDSEEEIEAAIKQAKAEGVDVIVGGGVVCRLARKLGLPGVLI 149 (176)
T ss_dssp ----CCHHHHHHHHT--EEEEEEESSHHHHHHHHHHHHHTT--EEEESHHHHHHHHHTTSEEEES
T ss_pred ----HHHHHHHHHhCC-ceEEEEECCHHHHHHHHHHHHHcCCcEEECCHHHHHHHHHcCCcEEEE
Confidence 235666666644 222222224444444444333456777777654444445566665544
No 461
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=30.09 E-value=6e+02 Score=27.23 Aligned_cols=136 Identities=14% Similarity=0.156 Sum_probs=73.9
Q ss_pred eEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHhcCCCCEEEEeCCCCcCCccCHHHHH
Q psy11975 516 DLLKPQKHTTTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLV 595 (786)
Q Consensus 516 PVIaGVGa~ST~EAIELAr~Ae~aGADAVmViPPyY~kps~S~eeLv~YFraIAeAtdLPIiLYNiP~~TGv~LSpelL~ 595 (786)
.+++|+|.--.. +.++.|.++||+-++ .|-+ ..+++++.. ..++| -.-|+.-+.|.+.
T Consensus 64 ~~lIGAGTVL~~---~q~~~a~~aGa~fiV--sP~~------~~ev~~~a~----~~~ip-------~~PG~~TptEi~~ 121 (211)
T COG0800 64 EALIGAGTVLNP---EQARQAIAAGAQFIV--SPGL------NPEVAKAAN----RYGIP-------YIPGVATPTEIMA 121 (211)
T ss_pred ccEEccccccCH---HHHHHHHHcCCCEEE--CCCC------CHHHHHHHH----hCCCc-------ccCCCCCHHHHHH
Confidence 488888874433 456677889999543 3332 345555543 33444 4446544444444
Q ss_pred HHHhCCCEEEEEeC--C---HHHHHHHHhhcCCCCEEEE--eCCcc-hhhhhhccCCccccccccccccHHHHHHHHHHH
Q psy11975 596 KLAHHENIRGVKDT--D---NIKLANMANQTKDLNFSVF--AGSAG-YLLSGLLVGCAGGINALSAVLGGPICELYDLAK 667 (786)
Q Consensus 596 rLAeiPNVVGIKDS--D---l~ri~~ll~~~~~~df~Vf--~G~De-lLL~aL~~GAdG~Isg~aN~~Pel~vaL~eA~~ 667 (786)
.| +. ....+|.= + -..+.+.+. -.-+++.++ .|-+. .+.+.+.+| ..+++..+.++|+.+ ..
T Consensus 122 Al-e~-G~~~lK~FPa~~~Gg~~~~ka~~-gP~~~v~~~pTGGVs~~N~~~yla~g-v~avG~Gs~l~~~~~------~~ 191 (211)
T COG0800 122 AL-EL-GASALKFFPAEVVGGPAMLKALA-GPFPQVRFCPTGGVSLDNAADYLAAG-VVAVGLGSWLVPKDL------IA 191 (211)
T ss_pred HH-Hc-ChhheeecCccccCcHHHHHHHc-CCCCCCeEeecCCCCHHHHHHHHhCC-ceEEecCccccChhh------hh
Confidence 44 32 45566765 1 233333333 123444432 23332 466778888 666663445666533 46
Q ss_pred cCCHHHHHHHHHHhhh
Q psy11975 668 AGKWEEAMKLQHRLVK 683 (786)
Q Consensus 668 aGD~eeAreLQ~rL~p 683 (786)
+||++++.++-+....
T Consensus 192 ~~~~~~i~~~a~~~~~ 207 (211)
T COG0800 192 AGDWDRITELAREAVA 207 (211)
T ss_pred cccHHHHHHHHHHHHH
Confidence 7898887776655443
No 462
>PLN02540 methylenetetrahydrofolate reductase
Probab=30.04 E-value=4.6e+02 Score=31.89 Aligned_cols=194 Identities=12% Similarity=-0.017 Sum_probs=0.0
Q ss_pred CCeEEEeCCCCCHH--HHHHHHHHHHHcCCCEEEEcCCCCCCCCCC-----------HHHHHHHHHHHHhc-CCCCEEEE
Q psy11975 514 QADLLKPQKHTTTR--ATIDLTQKAAKAGANAALILCPYYFQKKMT-----------EDLIYEHFISVADN-SPIPVIIY 579 (786)
Q Consensus 514 RVPVIaGVGa~ST~--EAIELAr~Ae~aGADAVmViPPyY~kps~S-----------~eeLv~YFraIAeA-tdLPIiLY 579 (786)
.+++|++.++.+.. +..+....|.++|+..|+++---.-+.. . .-+|++|.++.... ..+-+.-|
T Consensus 58 Gie~i~HLTCrd~n~~~L~~~L~~a~~~GIrNILALrGDpp~~~-d~~~~~~g~F~~A~dLV~~Ir~~~gd~f~IgVAGY 136 (565)
T PLN02540 58 CVETMMHLTCTNMPVEKIDHALETIKSNGIQNILALRGDPPHGQ-DKFVQVEGGFACALDLVKHIRSKYGDYFGITVAGY 136 (565)
T ss_pred CCCeeEEeeecCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCC-CCcCCCCCCcccHHHHHHHHHHhCCCCceEEEeCC
Q ss_pred eCCCCcCCccCH--------HHHHHHH-hCCCEEEEEeC----CHHHHHHHHhhcCCCC--EEEEeCCcchhhhhhccCC
Q psy11975 580 NNTFVTNIDISV--------DTLVKLA-HHENIRGVKDT----DNIKLANMANQTKDLN--FSVFAGSAGYLLSGLLVGC 644 (786)
Q Consensus 580 NiP~~TGv~LSp--------elL~rLA-eiPNVVGIKDS----Dl~ri~~ll~~~~~~d--f~Vf~G~DelLL~aL~~GA 644 (786)
-.-......+.+ ..+.+|. ++..=+-+=.| |.+.+.+.+++..... +.|+.|--...-.....=.
T Consensus 137 PEgHpe~~~~~~~~~~~~~~~dl~~Lk~KvdAGAdFiITQlfFD~d~f~~f~~~~r~~Gi~vPIipGImPI~S~k~l~r~ 216 (565)
T PLN02540 137 PEAHPDVIGGDGLATPEAYQKDLAYLKEKVDAGADLIITQLFYDTDIFLKFVNDCRQIGITCPIVPGIMPINNYKGFLRM 216 (565)
T ss_pred CCCCCcccccccccCCCChHHHHHHHHHHHHcCCCEEeeccccCHHHHHHHHHHHHhcCCCCCEEeeecccCCHHHHHHH
Q ss_pred ccccccccccccHHHHHHHHHHHcCCH----HHHHHHHHHhhhhHHH-HHhhhhccccCHHHHHHHHHHcCC
Q psy11975 645 AGGINALSAVLGGPICELYDLAKAGKW----EEAMKLQHRLVKPDVT-VRNVLLMKEMGVPGVRAAMELYGY 711 (786)
Q Consensus 645 dG~Isg~aN~~Pel~vaL~eA~~aGD~----eeAreLQ~rL~pLi~~-l~~~~~~~~~~ia~lKaaL~lrGI 711 (786)
.- +++.. +|+.+.+.++.+++.|. ....-.-+.+..+.+. +.+.....-.....++.+|+..|+
T Consensus 217 ~~-l~Gi~--IP~~i~~rLe~~kddde~v~~~Gieia~e~~~~L~~~Gv~GiHfYTlN~e~~v~~ILe~lgl 285 (565)
T PLN02540 217 TG-FCKTK--IPAEITAALEPIKDNDEAVKAYGIHLGTEMCKKILAHGIKGLHLYTLNLEKSALAILMNLGL 285 (565)
T ss_pred Hh-ccCCc--CCHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcCCCEEEECccCChHHHHHHHHHcCC
No 463
>cd06311 PBP1_ABC_sugar_binding_like_3 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=29.96 E-value=2.2e+02 Score=29.15 Aligned_cols=60 Identities=10% Similarity=0.057 Sum_probs=42.5
Q ss_pred CeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHhcCCCCEEEEeCC
Q psy11975 515 ADLLKPQKHTTTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNT 582 (786)
Q Consensus 515 VPVIaGVGa~ST~EAIELAr~Ae~aGADAVmViPPyY~kps~S~eeLv~YFraIAeAtdLPIiLYNiP 582 (786)
..+++.-+.....+..++.+.+...++|++++.+.- .+.+...++.+ ...++||++.|.+
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~l~~~~vDgiii~~~~-------~~~~~~~i~~~-~~~gIpvV~~d~~ 94 (274)
T cd06311 35 VEFILVTASNDTEQQNAQQDLLINRKIDALVILPFE-------SAPLTQPVAKA-KKAGIFVVVVDRG 94 (274)
T ss_pred eEEEEEcCCCCHHHHHHHHHHHHHcCCCEEEEeCCC-------chhhHHHHHHH-HHCCCeEEEEcCC
Confidence 456666666667777788888888999999998632 22344555554 4568999999864
No 464
>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=29.95 E-value=1.4e+02 Score=32.91 Aligned_cols=77 Identities=8% Similarity=0.089 Sum_probs=57.2
Q ss_pred EEeCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHhcCCCCEEEEeCCCCcCCccCHHHHHHH
Q psy11975 518 LKPQKHTTTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKL 597 (786)
Q Consensus 518 IaGVGa~ST~EAIELAr~Ae~aGADAVmViPPyY~kps~S~eeLv~YFraIAeAtdLPIiLYNiP~~TGv~LSpelL~rL 597 (786)
|......+.+.+....+.|++.++..|+-+.|.-.+.. .-+.+..+.+.+|+.+.+||.|.-- -|. +.+.+.+-
T Consensus 20 V~AfNv~n~e~~~avi~AAee~~sPvIlq~~~~~~~~~-g~~~~~~~~~~~A~~~~VPValHLD---H~~--~~e~i~~a 93 (284)
T PRK12857 20 VGAFNCNNMEIVQAIVAAAEAEKSPVIIQASQGAIKYA-GIEYISAMVRTAAEKASVPVALHLD---HGT--DFEQVMKC 93 (284)
T ss_pred EEEEEeCCHHHHHHHHHHHHHhCCCEEEEechhHhhhC-CHHHHHHHHHHHHHHCCCCEEEECC---CCC--CHHHHHHH
Confidence 33444557888889999999999999999988655432 3677889999999999999998753 222 45666665
Q ss_pred HhC
Q psy11975 598 AHH 600 (786)
Q Consensus 598 Aei 600 (786)
.+.
T Consensus 94 i~~ 96 (284)
T PRK12857 94 IRN 96 (284)
T ss_pred HHc
Confidence 553
No 465
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=29.87 E-value=1.6e+02 Score=33.54 Aligned_cols=210 Identities=18% Similarity=0.151 Sum_probs=109.6
Q ss_pred cCCCCeEEEeCC----CCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHhcCCCCEEEEeCCCCcC
Q psy11975 511 REWQADLLKPQK----HTTTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTN 586 (786)
Q Consensus 511 vaGRVPVIaGVG----a~ST~EAIELAr~Ae~aGADAVmViPPyY~kps~S~eeLv~YFraIAeAtdLPIiLYNiP~~TG 586 (786)
++|..||.++-- ..+.+.+++..+..+++|+|-|=+.-|- .+-.+-|.+|.+.+++|++.=
T Consensus 16 vGgdaPI~VQSMTnT~T~Dv~aTv~QI~~L~~aG~dIVRvtv~~--------~e~A~A~~~Ik~~~~vPLVaD------- 80 (361)
T COG0821 16 VGGDAPIVVQSMTNTDTADVEATVAQIKALERAGCDIVRVTVPD--------MEAAEALKEIKQRLNVPLVAD------- 80 (361)
T ss_pred ecCCCceEEEeccCCCcccHHHHHHHHHHHHHcCCCEEEEecCC--------HHHHHHHHHHHHhCCCCEEEE-------
Confidence 678889988543 3457788999999999999999888653 334577889999999999842
Q ss_pred CccCHHHHHHHHhC--------CCEEEEEeCCHHHHHHHHhhcCCCCEEEEeCCc-----chhhhhhc-cCCcccccccc
Q psy11975 587 IDISVDTLVKLAHH--------ENIRGVKDTDNIKLANMANQTKDLNFSVFAGSA-----GYLLSGLL-VGCAGGINALS 652 (786)
Q Consensus 587 v~LSpelL~rLAei--------PNVVGIKDSDl~ri~~ll~~~~~~df~Vf~G~D-----elLL~aL~-~GAdG~Isg~a 652 (786)
+.+...++.+-++. |.=+|.|+ ++.++++.....+..|=.|-. ..++.-+. .-.++.+-+.-
T Consensus 81 iHf~~rla~~~~~~g~~k~RINPGNig~~~----~v~~vVe~Ak~~g~piRIGVN~GSLek~~~~ky~~pt~ealveSAl 156 (361)
T COG0821 81 IHFDYRLALEAAECGVDKVRINPGNIGFKD----RVREVVEAAKDKGIPIRIGVNAGSLEKRLLEKYGGPTPEALVESAL 156 (361)
T ss_pred eeccHHHHHHhhhcCcceEEECCcccCcHH----HHHHHHHHHHHcCCCEEEecccCchhHHHHHHhcCCCHHHHHHHHH
Confidence 12233344333333 44444444 455444322222333333322 22443331 11111111110
Q ss_pred ccccHHHHHHHHHH---------HcCCHHHHHHHHHHhhhhHHHHHhhhhcc-ccC-HHHHHHHHH-----HcCCCCCCC
Q psy11975 653 AVLGGPICELYDLA---------KAGKWEEAMKLQHRLVKPDVTVRNVLLMK-EMG-VPGVRAAME-----LYGYYGGRS 716 (786)
Q Consensus 653 N~~Pel~vaL~eA~---------~aGD~eeAreLQ~rL~pLi~~l~~~~~~~-~~~-ia~lKaaL~-----lrGI~~G~v 716 (786)
...++++.+ +.-|...+.+.++.|.+..+.=....... +.+ -..+|-++. ..|| ...+
T Consensus 157 -----~~a~~~e~l~f~~i~iS~K~Sdv~~~v~aYr~lA~~~dyPLHLGvTEAG~~~~G~VkSa~alg~LL~eGI-GDTI 230 (361)
T COG0821 157 -----EHAELLEELGFDDIKVSVKASDVQLMVAAYRLLAKRCDYPLHLGVTEAGMGFKGIVKSAAALGALLSEGI-GDTI 230 (361)
T ss_pred -----HHHHHHHHCCCCcEEEEEEcCCHHHHHHHHHHHHHhcCCCcccceecccCcccceehHHHHHHHHHHhcC-CceE
Confidence 111222222 23444445555544444332100000011 111 123443322 2465 2357
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHcCCCCccc
Q psy11975 717 RRPLPAALKPGGAEKIKQVLTEAGFLVPGV 746 (786)
Q Consensus 717 R~PL~~pLseeekaeL~~~L~~lGll~~~~ 746 (786)
|--|. +=+.+|...-+++|+.+|+-..++
T Consensus 231 RVSLt-~~P~~EV~V~~eILqslglR~~~v 259 (361)
T COG0821 231 RVSLT-ADPVEEVKVAQEILQSLGLRSRGV 259 (361)
T ss_pred EEecC-CCchhhhHHHHHHHHHhCccccCc
Confidence 88888 667888888899999999865443
No 466
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=29.84 E-value=2e+02 Score=30.79 Aligned_cols=40 Identities=10% Similarity=0.086 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHH
Q psy11975 527 RATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVA 569 (786)
Q Consensus 527 ~EAIELAr~Ae~aGADAVmViPPyY~kps~S~eeLv~YFraIA 569 (786)
+.+.+.++.|.+.|.. |.+.+|+....+ .+.+.+.++++.
T Consensus 114 ~~~~~~i~~a~~~G~~-v~~~~~~~~~~~--~~~~~~~~~~~~ 153 (268)
T cd07940 114 ERAVEAVEYAKSHGLD-VEFSAEDATRTD--LDFLIEVVEAAI 153 (268)
T ss_pred HHHHHHHHHHHHcCCe-EEEeeecCCCCC--HHHHHHHHHHHH
Confidence 3444555555556643 334444433322 555555555544
No 467
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=29.70 E-value=7.6e+02 Score=26.86 Aligned_cols=73 Identities=15% Similarity=0.192 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHcCCCEEEEcC-----------CCCCCCC----CC----HHHHHHHHHHHHhcC--CCCEEEEeCCCC
Q psy11975 526 TRATIDLTQKAAKAGANAALILC-----------PYYFQKK----MT----EDLIYEHFISVADNS--PIPVIIYNNTFV 584 (786)
Q Consensus 526 T~EAIELAr~Ae~aGADAVmViP-----------PyY~kps----~S----~eeLv~YFraIAeAt--dLPIiLYNiP~~ 584 (786)
.++-++.|+.|+++|+|+|-+-. |.+.+-+ -+ .+-+.+-.++|.+++ ++||.+==.|..
T Consensus 140 i~~~~~aA~~a~~aGfDgveih~~~gyL~~qFlsp~~n~R~d~yGgs~enr~r~~~eii~avr~~~g~d~~i~vris~~~ 219 (327)
T cd02803 140 IEDFAAAARRAKEAGFDGVEIHGAHGYLLSQFLSPYTNKRTDEYGGSLENRARFLLEIVAAVREAVGPDFPVGVRLSADD 219 (327)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcchhhhHHHHhcCccccCCCcccCCCHHHHHHHHHHHHHHHHHHcCCCceEEEEechhc
Confidence 35556778899999999998764 3322211 01 123466667777777 577776433321
Q ss_pred c-CCccCHHHHHHHH
Q psy11975 585 T-NIDISVDTLVKLA 598 (786)
Q Consensus 585 T-Gv~LSpelL~rLA 598 (786)
. ...++.+...+++
T Consensus 220 ~~~~g~~~~e~~~la 234 (327)
T cd02803 220 FVPGGLTLEEAIEIA 234 (327)
T ss_pred cCCCCCCHHHHHHHH
Confidence 1 0124555544444
No 468
>cd04824 eu_ALAD_PBGS_cysteine_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. The eukaryotic PBGSs represented by this model, which contain a cysteine-rich zinc binding motif (DXCXCX(Y/F)X3G(H/Q)CG), require zinc for their activity, they
Probab=29.60 E-value=1.2e+02 Score=34.20 Aligned_cols=51 Identities=10% Similarity=0.203 Sum_probs=38.8
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHhcC-CCCEEEEeCC
Q psy11975 523 HTTTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNS-PIPVIIYNNT 582 (786)
Q Consensus 523 a~ST~EAIELAr~Ae~aGADAVmViPPyY~kps~S~eeLv~YFraIAeAt-dLPIiLYNiP 582 (786)
-.+.+||++.+..=.+-|||.+||=|-.. -.+-.+++-+.+ ++|+..||.-
T Consensus 221 p~n~~eAlre~~~D~~EGAD~lMVKPal~---------YLDIi~~~k~~~~~~PvaaYqVS 272 (320)
T cd04824 221 PGARGLALRAVERDVSEGADMIMVKPGTP---------YLDIVREAKDKHPDLPLAVYHVS 272 (320)
T ss_pred CcCHHHHHHHHHhhHHhCCCEEEEcCCch---------HHHHHHHHHHhccCCCEEEEEcc
Confidence 34678888887777778999999987432 245566777888 8999999953
No 469
>TIGR01975 isoAsp_dipep isoaspartyl dipeptidase IadA. The L-isoaspartyl derivative of Asp arises non-enzymatically over time as a form of protein damage. In this isomerization, the connectivity of the polypeptide changes to pass through the beta-carboxyl of the side chain. Much but not all of this damage can be repaired by protein-L-isoaspartate (D-aspartate) O-methyltransferase. This model describes the isoaspartyl dipeptidase IadA, apparently one of two such enzymes in E. coli, an enzyme that degrades isoaspartyl dipeptides and may unblock degradation of proteins that cannot be repaired. This model also describes closely related proteins from other species (e.g. Clostridium perfringens, Thermoanaerobacter tengcongensis) that we assume to be equivalent in function. This family shows homology to dihydroorotases.
Probab=29.57 E-value=1.4e+02 Score=34.04 Aligned_cols=34 Identities=3% Similarity=0.009 Sum_probs=21.4
Q ss_pred CeEEEeCCC-----CCHHHHHHHHHHHHHcCCCEEEEcC
Q psy11975 515 ADLLKPQKH-----TTTRATIDLTQKAAKAGANAALILC 548 (786)
Q Consensus 515 VPVIaGVGa-----~ST~EAIELAr~Ae~aGADAVmViP 548 (786)
+.-++++++ ...+..++.+|.+.+.|..+++...
T Consensus 91 vTTv~d~~g~~~~~~~~~~~~a~~~al~~~Gir~~~~~g 129 (389)
T TIGR01975 91 VTTVVGLLGTDGITRHMESLLAKARALEEEGISCYMLTG 129 (389)
T ss_pred cEEEecCcccCccccChhhHHHHHHHHHHhCCEEEEEcc
Confidence 444555543 3444566677777888888777754
No 470
>cd02808 GltS_FMN Glutamate synthase (GltS) FMN-binding domain. GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant, yeast and bacterial pathway for ammonia assimilation. It is a multifunctional enzyme that functions through three distinct active centers, carrying out L-glutamine hydrolysis, conversion of 2-oxoglutarate into L-glutamate, and electron uptake from an electron donor.
Probab=29.55 E-value=5.6e+02 Score=29.35 Aligned_cols=110 Identities=9% Similarity=0.004 Sum_probs=63.3
Q ss_pred EEcCCCCCCCCCCHHHHHHHHHHHHhcCC-CCEEEEeCCCCcCCccCHHHHHHHHhC--CCEEEEEeC------------
Q psy11975 545 LILCPYYFQKKMTEDLIYEHFISVADNSP-IPVIIYNNTFVTNIDISVDTLVKLAHH--ENIRGVKDT------------ 609 (786)
Q Consensus 545 mViPPyY~kps~S~eeLv~YFraIAeAtd-LPIiLYNiP~~TGv~LSpelL~rLAei--PNVVGIKDS------------ 609 (786)
++.||.+.... +.+++.++.+.|.+.++ +||++=-.+. . .++.++++++. ..++-|=-.
T Consensus 186 ~isp~~~~~~~-~~~~l~~~I~~lr~~~~~~pV~vK~~~~----~-~~~~~a~~~~~~g~D~I~VsG~~Ggtg~~~~~~~ 259 (392)
T cd02808 186 LISPPPHHDIY-SIEDLAQLIEDLREATGGKPIGVKLVAG----H-GEGDIAAGVAAAGADFITIDGAEGGTGAAPLTFI 259 (392)
T ss_pred ccCCCCCCCCC-CHHHHHHHHHHHHHhCCCceEEEEECCC----C-CHHHHHHHHHHcCCCEEEEeCCCCCCCCCccccc
Confidence 34455443332 58899999999999997 9999877553 1 45666666632 222212111
Q ss_pred -----C----HHHHHHHHhhc-CCCCEEEEe-CC--c-chhhhhhccCCccccccccccccHHHH
Q psy11975 610 -----D----NIKLANMANQT-KDLNFSVFA-GS--A-GYLLSGLLVGCAGGINALSAVLGGPIC 660 (786)
Q Consensus 610 -----D----l~ri~~ll~~~-~~~df~Vf~-G~--D-elLL~aL~~GAdG~Isg~aN~~Pel~v 660 (786)
. +..+.+.+.+. .+.++.|+. |. + ..++.+|++||+++..+...++.-.+.
T Consensus 260 ~~~g~pt~~~L~~v~~~~~~~~~~~~i~viasGGI~~g~Dv~kalaLGAd~V~ig~~~l~al~c~ 324 (392)
T cd02808 260 DHVGLPTELGLARAHQALVKNGLRDRVSLIASGGLRTGADVAKALALGADAVGIGTAALIALGCI 324 (392)
T ss_pred ccCCccHHHHHHHHHHHHHHcCCCCCCeEEEECCCCCHHHHHHHHHcCCCeeeechHHHHhcchH
Confidence 0 11222222211 123566544 22 1 236778999999998888776654444
No 471
>PRK06852 aldolase; Validated
Probab=29.52 E-value=1.3e+02 Score=33.64 Aligned_cols=55 Identities=5% Similarity=-0.019 Sum_probs=41.4
Q ss_pred CCCCeEEE-eCCCCCHHHHHHHHHHHHH-cCCCEEEEcCCCCCCCCCCH--HHHHHHHHHH
Q psy11975 512 EWQADLLK-PQKHTTTRATIDLTQKAAK-AGANAALILCPYYFQKKMTE--DLIYEHFISV 568 (786)
Q Consensus 512 aGRVPVIa-GVGa~ST~EAIELAr~Ae~-aGADAVmViPPyY~kps~S~--eeLv~YFraI 568 (786)
.|++||++ |=...+.++.+++++.|.+ .||.++.+-=-.|..+. + ..+.+-+.+|
T Consensus 228 ~g~vpVviaGG~k~~~~e~L~~v~~ai~~aGa~Gv~~GRNIfQ~~~--p~~~~~~~Ai~~I 286 (304)
T PRK06852 228 AGRTKVVCAGGSSTDPEEFLKQLYEQIHISGASGNATGRNIHQKPL--DEAVRMCNAIYAI 286 (304)
T ss_pred CCCCcEEEeCCCCCCHHHHHHHHHHHHHHcCCceeeechhhhcCCC--chHHHHHHHHHHH
Confidence 45788665 5555588999999999988 99999999988888765 4 4444444444
No 472
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=29.42 E-value=1.7e+02 Score=33.34 Aligned_cols=212 Identities=14% Similarity=0.131 Sum_probs=108.8
Q ss_pred cCCCCeEEEeCC----CCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHhcCCCCEEEEeCCCCcC
Q psy11975 511 REWQADLLKPQK----HTTTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTN 586 (786)
Q Consensus 511 vaGRVPVIaGVG----a~ST~EAIELAr~Ae~aGADAVmViPPyY~kps~S~eeLv~YFraIAeAtdLPIiLYNiP~~TG 586 (786)
.+|..||.++.- ..+++.+++.++..+++|+|-|=+.-| +.+-.+-+..|-+.+++|++.== .
T Consensus 14 IGG~~PI~VQSMtnt~T~Dv~atv~QI~~L~~aGceiVRvavp--------~~~~A~al~~I~~~~~iPlVADI-----H 80 (346)
T TIGR00612 14 VGGDAPIVVQSMTNTDTIDIDSTVAQIRALEEAGCDIVRVTVP--------DRESAAAFEAIKEGTNVPLVADI-----H 80 (346)
T ss_pred ECCCCcEEEEecCCCCchhHHHHHHHHHHHHHcCCCEEEEcCC--------CHHHHHhHHHHHhCCCCCEEEee-----C
Confidence 568888888543 445778899999999999999988865 24456778888889999998521 1
Q ss_pred CccCHHHHHHHHhCCCEEEEEeC-----CHHHHHHHHhhcCCCCEEEEeCCcch-hhhhh--ccCCc---cccccccccc
Q psy11975 587 IDISVDTLVKLAHHENIRGVKDT-----DNIKLANMANQTKDLNFSVFAGSAGY-LLSGL--LVGCA---GGINALSAVL 655 (786)
Q Consensus 587 v~LSpelL~rLAeiPNVVGIKDS-----Dl~ri~~ll~~~~~~df~Vf~G~Del-LL~aL--~~GAd---G~Isg~aN~~ 655 (786)
+++.. .+..+. ..+-.|-.. +.+++.++++.....++.|=.|...- +-.-+ ..|.. +.+-+.
T Consensus 81 Fd~~l-Al~a~~--~g~dkiRINPGNig~~e~v~~vv~~ak~~~ipIRIGVN~GSL~~~~~~kyg~~t~eamveSA---- 153 (346)
T TIGR00612 81 FDYRL-AALAMA--KGVAKVRINPGNIGFRERVRDVVEKARDHGKAMRIGVNHGSLERRLLEKYGDATAEAMVQSA---- 153 (346)
T ss_pred CCcHH-HHHHHH--hccCeEEECCCCCCCHHHHHHHHHHHHHCCCCEEEecCCCCCcHHHHHHcCCCCHHHHHHHH----
Confidence 11111 122222 122333333 34566665543333344444444321 11111 12210 111110
Q ss_pred cHHHHHHHHHH---------HcCCHHHHHHHHHHhhhhHHH---HHhhhhccccCHHHHHHHHH-----HcCCCCCCCCC
Q psy11975 656 GGPICELYDLA---------KAGKWEEAMKLQHRLVKPDVT---VRNVLLMKEMGVPGVRAAME-----LYGYYGGRSRR 718 (786)
Q Consensus 656 Pel~vaL~eA~---------~aGD~eeAreLQ~rL~pLi~~---l~~~~~~~~~~ia~lKaaL~-----lrGI~~G~vR~ 718 (786)
-..+++++.+ ++-|.....+.++.+..-.++ + +........-..+|-+.. ..|+ ....|-
T Consensus 154 -l~~v~~le~~~F~diviS~KsSdv~~~i~ayr~la~~~dyPLHl-GVTEAG~~~~G~IKSaigig~LL~~GI-GDTIRV 230 (346)
T TIGR00612 154 -LEEAAILEKLGFRNVVLSMKASDVAETVAAYRLLAERSDYPLHL-GVTEAGMGVKGIVKSSAGIGILLARGI-GDTIRV 230 (346)
T ss_pred -HHHHHHHHHCCCCcEEEEEEcCCHHHHHHHHHHHHhhCCCCcee-ccccCCCCCCchhHHHHHHHHHHhhCC-CCeEEE
Confidence 1222233322 123433333333333322210 0 000001111244665443 2355 235788
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCCCCccc
Q psy11975 719 PLPAALKPGGAEKIKQVLTEAGFLVPGV 746 (786)
Q Consensus 719 PL~~pLseeekaeL~~~L~~lGll~~~~ 746 (786)
-|. .-+.+|...-.++|+.+|+...++
T Consensus 231 SLT-~dP~~EV~va~~IL~slglr~~g~ 257 (346)
T TIGR00612 231 SLT-DDPTHEVPVAFEILQSLGLRARGV 257 (346)
T ss_pred ECC-CCcHHHHHHHHHHHHHcCCCcCCC
Confidence 888 767888888999999999976554
No 473
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=29.41 E-value=1.8e+02 Score=31.37 Aligned_cols=57 Identities=16% Similarity=0.114 Sum_probs=45.0
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHhcCC--CCEEEE
Q psy11975 523 HTTTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSP--IPVIIY 579 (786)
Q Consensus 523 a~ST~EAIELAr~Ae~aGADAVmViPPyY~kps~S~eeLv~YFraIAeAtd--LPIiLY 579 (786)
..+.+...+++++..+.|++++++.--.--...++.+|-.+..+.++++++ +||+.-
T Consensus 18 ~iD~~~l~~~i~~l~~~Gv~gi~~~Gs~GE~~~ls~~Er~~~~~~~~~~~~~~~~vi~g 76 (292)
T PRK03170 18 SVDFAALRKLVDYLIANGTDGLVVVGTTGESPTLTHEEHEELIRAVVEAVNGRVPVIAG 76 (292)
T ss_pred CcCHHHHHHHHHHHHHcCCCEEEECCcCCccccCCHHHHHHHHHHHHHHhCCCCcEEee
Confidence 567889999999999999999998765433334569999999998888773 787743
No 474
>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=29.39 E-value=7.4e+02 Score=26.94 Aligned_cols=108 Identities=16% Similarity=0.121 Sum_probs=70.1
Q ss_pred CCCCeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHhcCC-CCEEEEeCCCCcCCccC
Q psy11975 512 EWQADLLKPQKHTTTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSP-IPVIIYNNTFVTNIDIS 590 (786)
Q Consensus 512 aGRVPVIaGVGa~ST~EAIELAr~Ae~aGADAVmViPPyY~kps~S~eeLv~YFraIAeAtd-LPIiLYNiP~~TGv~LS 590 (786)
..++|+.+..+..+.++.++.++.+.+.|.+++=+-.. . +.+..++.+++|.++.+ ++|++=-+ .+ ++
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~iKik~g----~--~~~~d~~~v~~lr~~~g~~~l~vD~n---~~--~~ 189 (316)
T cd03319 121 PRPLETDYTISIDTPEAMAAAAKKAAKRGFPLLKIKLG----G--DLEDDIERIRAIREAAPDARLRVDAN---QG--WT 189 (316)
T ss_pred CCCceeEEEEeCCCHHHHHHHHHHHHHcCCCEEEEEeC----C--ChhhHHHHHHHHHHhCCCCeEEEeCC---CC--cC
Confidence 34678887777778899999999999999999877432 1 24556788899888775 65554322 22 44
Q ss_pred HHHHHHHH---hCCCEEEEEeC----CHHHHHHHHhhcCCCCEEEEeCCc
Q psy11975 591 VDTLVKLA---HHENIRGVKDT----DNIKLANMANQTKDLNFSVFAGSA 633 (786)
Q Consensus 591 pelL~rLA---eiPNVVGIKDS----Dl~ri~~ll~~~~~~df~Vf~G~D 633 (786)
.+...+++ +--++..|.+- |...++++.+ ..++.|..|..
T Consensus 190 ~~~A~~~~~~l~~~~l~~iEeP~~~~d~~~~~~L~~---~~~ipIa~~E~ 236 (316)
T cd03319 190 PEEAVELLRELAELGVELIEQPVPAGDDDGLAYLRD---KSPLPIMADES 236 (316)
T ss_pred HHHHHHHHHHHHhcCCCEEECCCCCCCHHHHHHHHh---cCCCCEEEeCC
Confidence 45544443 22367777765 5667766654 23456666554
No 475
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=29.37 E-value=2.5e+02 Score=27.33 Aligned_cols=86 Identities=10% Similarity=0.030 Sum_probs=51.7
Q ss_pred HHHHHHHhcCCCCEEEEeCCCCcCCccCHHHHHHHH-h-CCCEEEEEeC---CH---HHHHHHHhhcCCCCEEEEeCC--
Q psy11975 563 EHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLA-H-HENIRGVKDT---DN---IKLANMANQTKDLNFSVFAGS-- 632 (786)
Q Consensus 563 ~YFraIAeAtdLPIiLYNiP~~TGv~LSpelL~rLA-e-iPNVVGIKDS---Dl---~ri~~ll~~~~~~df~Vf~G~-- 632 (786)
++.....+..+.-|+ + .|.+.+++.+.+-+ + -+.++||=-. -. ..+.+.+++...+++.|+.|.
T Consensus 20 ~iv~~~l~~~GfeVi--~----lg~~~s~e~~v~aa~e~~adii~iSsl~~~~~~~~~~~~~~L~~~g~~~i~vivGG~~ 93 (132)
T TIGR00640 20 KVIATAYADLGFDVD--V----GPLFQTPEEIARQAVEADVHVVGVSSLAGGHLTLVPALRKELDKLGRPDILVVVGGVI 93 (132)
T ss_pred HHHHHHHHhCCcEEE--E----CCCCCCHHHHHHHHHHcCCCEEEEcCchhhhHHHHHHHHHHHHhcCCCCCEEEEeCCC
Confidence 344444444444443 3 46678888887776 3 5788888554 22 333333332223367888883
Q ss_pred -cchhhhhhccCCcccccccccc
Q psy11975 633 -AGYLLSGLLVGCAGGINALSAV 654 (786)
Q Consensus 633 -DelLL~aL~~GAdG~Isg~aN~ 654 (786)
++.......+|.++++..-.|+
T Consensus 94 ~~~~~~~l~~~Gvd~~~~~gt~~ 116 (132)
T TIGR00640 94 PPQDFDELKEMGVAEIFGPGTPI 116 (132)
T ss_pred ChHhHHHHHHCCCCEEECCCCCH
Confidence 3345556679999999887764
No 476
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=29.35 E-value=1.2e+02 Score=31.30 Aligned_cols=51 Identities=24% Similarity=0.304 Sum_probs=22.5
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHhcCC-CCEE
Q psy11975 524 TTTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSP-IPVI 577 (786)
Q Consensus 524 ~ST~EAIELAr~Ae~aGADAVmViPPyY~kps~S~eeLv~YFraIAeAtd-LPIi 577 (786)
.+.++.+++++.+.++|+|.|.+.--.-. ++++++.++++.|-++.+ +||-
T Consensus 134 ~~~~~~~~~~~~~~~~g~~~i~l~Dt~G~---~~P~~v~~lv~~~~~~~~~~~l~ 185 (237)
T PF00682_consen 134 TDPEELLELAEALAEAGADIIYLADTVGI---MTPEDVAELVRALREALPDIPLG 185 (237)
T ss_dssp SSHHHHHHHHHHHHHHT-SEEEEEETTS----S-HHHHHHHHHHHHHHSTTSEEE
T ss_pred ccHHHHHHHHHHHHHcCCeEEEeeCccCC---cCHHHHHHHHHHHHHhccCCeEE
Confidence 34455555555555555555444432211 124555555555555443 4443
No 477
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=29.34 E-value=1.5e+02 Score=32.65 Aligned_cols=50 Identities=12% Similarity=0.097 Sum_probs=36.3
Q ss_pred CCeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHH
Q psy11975 514 QADLLKPQKHTTTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVA 569 (786)
Q Consensus 514 RVPVIaGVGa~ST~EAIELAr~Ae~aGADAVmViPPyY~kps~S~eeLv~YFraIA 569 (786)
++|||++.|=.+..|+ ..|.++|||||++..-..-.. ++.++..-|+.-.
T Consensus 189 ~vpVivdAGIgt~sDa----~~AmElGaDgVL~nSaIakA~--dP~~mA~a~~~AV 238 (267)
T CHL00162 189 KIPVIIDAGIGTPSEA----SQAMELGASGVLLNTAVAQAK--NPEQMAKAMKLAV 238 (267)
T ss_pred CCcEEEeCCcCCHHHH----HHHHHcCCCEEeecceeecCC--CHHHHHHHHHHHH
Confidence 5899997776666654 568899999999998776443 4777766665443
No 478
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=29.31 E-value=1.8e+02 Score=31.59 Aligned_cols=57 Identities=9% Similarity=0.020 Sum_probs=45.6
Q ss_pred CCCCHHHHHHHHHHHHH-cCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHhcCC--CCEEE
Q psy11975 522 KHTTTRATIDLTQKAAK-AGANAALILCPYYFQKKMTEDLIYEHFISVADNSP--IPVII 578 (786)
Q Consensus 522 Ga~ST~EAIELAr~Ae~-aGADAVmViPPyY~kps~S~eeLv~YFraIAeAtd--LPIiL 578 (786)
+..+.+...+++++..+ .|++++++.--.--...++.+|-.+..+.+.++++ +||+.
T Consensus 19 g~iD~~~~~~li~~l~~~~Gv~gi~v~GstGE~~~Ls~eEr~~~~~~~~~~~~~~~~via 78 (293)
T PRK04147 19 GQIDEQGLRRLVRFNIEKQGIDGLYVGGSTGEAFLLSTEEKKQVLEIVAEEAKGKVKLIA 78 (293)
T ss_pred CCcCHHHHHHHHHHHHhcCCCCEEEECCCccccccCCHHHHHHHHHHHHHHhCCCCCEEe
Confidence 45678999999999999 99999998875433334569999999998888873 78776
No 479
>PF09926 DUF2158: Uncharacterized small protein (DUF2158); InterPro: IPR019226 This entry represents a family of predominantly prokaryotic proteins with no known function.
Probab=29.30 E-value=84 Score=26.47 Aligned_cols=36 Identities=25% Similarity=0.422 Sum_probs=27.8
Q ss_pred CCCCceEEEecccCCCCCccccCCC-----CCCCcEEEEEeCCCC
Q psy11975 357 LAEGDLVWGSVKGYPSWPGKLISPA-----PTQGRVWVKWFGMSN 396 (786)
Q Consensus 357 f~vGDLVWaKvkG~PwWPg~V~~~~-----~~~g~~~V~fFG~~~ 396 (786)
|.+||+|=-|=.| |.|.+..- ...+.+..+||..+.
T Consensus 1 f~~GDvV~LKSGG----p~MTV~~v~~~~~~~~~~v~C~WFd~~~ 41 (53)
T PF09926_consen 1 FKIGDVVQLKSGG----PRMTVTEVGPNAGASGGWVECQWFDGHG 41 (53)
T ss_pred CCCCCEEEEccCC----CCeEEEEccccccCCCCeEEEEeCCCCC
Confidence 7899999999888 66777632 234689999999874
No 480
>cd06308 PBP1_sensor_kinase_like Periplasmic binding domain of two-component sensor kinase signaling systems. Periplasmic binding domain of two-component sensor kinase signaling systems, some of which are fused with a C-terminal histidine kinase A domain (HisK) and/or a signal receiver domain (REC). Members of this group share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily and are predicted to be involved in sensing of environmental stimuli; their substrate specificities, however, are not known in detail.
Probab=29.27 E-value=2.2e+02 Score=29.15 Aligned_cols=60 Identities=12% Similarity=0.139 Sum_probs=39.4
Q ss_pred CeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHhcCCCCEEEEeCC
Q psy11975 515 ADLLKPQKHTTTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNT 582 (786)
Q Consensus 515 VPVIaGVGa~ST~EAIELAr~Ae~aGADAVmViPPyY~kps~S~eeLv~YFraIAeAtdLPIiLYNiP 582 (786)
.-|++.....+..+..+..+.+...++|+|++.+... +.....++.+ .+.++|++++|.+
T Consensus 31 ~~~~~~~~~~~~~~~~~~i~~~~~~~vdgiii~~~~~-------~~~~~~~~~~-~~~~ipvV~~~~~ 90 (270)
T cd06308 31 VELIIADAADDNSKQVADIENFIRQGVDLLIISPNEA-------APLTPVVEEA-YRAGIPVILLDRK 90 (270)
T ss_pred cEEEEEcCCCCHHHHHHHHHHHHHhCCCEEEEecCch-------hhchHHHHHH-HHCCCCEEEeCCC
Confidence 4455544455677778888888888999999876431 1112333333 3468999999853
No 481
>cd06315 PBP1_ABC_sugar_binding_like_6 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=29.20 E-value=3e+02 Score=28.64 Aligned_cols=60 Identities=8% Similarity=0.020 Sum_probs=41.8
Q ss_pred CeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHhcCCCCEEEEeCC
Q psy11975 515 ADLLKPQKHTTTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNT 582 (786)
Q Consensus 515 VPVIaGVGa~ST~EAIELAr~Ae~aGADAVmViPPyY~kps~S~eeLv~YFraIAeAtdLPIiLYNiP 582 (786)
..+++..+..+.+..++..+.+...++|++++.++. .+....+++.+. ..++|+++++.+
T Consensus 31 y~~~~~~~~~~~~~~~~~i~~l~~~~vdgiil~~~~-------~~~~~~~~~~~~-~~~iPvV~~d~~ 90 (280)
T cd06315 31 WNLRILDGRGSEAGQAAALNQAIALKPDGIVLGGVD-------AAELQAELELAQ-KAGIPVVGWHAG 90 (280)
T ss_pred cEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEcCCC-------HHHHHHHHHHHH-HCCCCEEEecCC
Confidence 345555556677878889999999999999998632 122234445443 468999999974
No 482
>COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism]
Probab=29.17 E-value=1.6e+02 Score=32.34 Aligned_cols=53 Identities=13% Similarity=0.207 Sum_probs=42.9
Q ss_pred CeEEE--eCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHH
Q psy11975 515 ADLLK--PQKHTTTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVA 569 (786)
Q Consensus 515 VPVIa--GVGa~ST~EAIELAr~Ae~aGADAVmViPPyY~kps~S~eeLv~YFraIA 569 (786)
+|||+ |-...+.+++++..+.|.++||.++.+-=-.|.++. ++.+.+-+.+|-
T Consensus 203 vpVviaGG~k~~~~~~~l~~~~~ai~aGa~G~~~GRNifQ~~~--p~~m~~Ai~~Iv 257 (265)
T COG1830 203 VPVVIAGGPKTETEREFLEMVTAAIEAGAMGVAVGRNIFQHED--PEAMVKAIQAIV 257 (265)
T ss_pred CCEEEeCCCCCCChHHHHHHHHHHHHccCcchhhhhhhhccCC--hHHHHHHHHHHh
Confidence 88876 444458999999999999999999999988888876 777766666553
No 483
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=29.10 E-value=3.3e+02 Score=28.78 Aligned_cols=84 Identities=12% Similarity=0.107 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHHcCCCEEEEcCCCCCCCC--CCHHHHHHHHHHHHhcC---CCCEEEEeCCCCc-CCccCHHHHHHHHh
Q psy11975 526 TRATIDLTQKAAKAGANAALILCPYYFQKK--MTEDLIYEHFISVADNS---PIPVIIYNNTFVT-NIDISVDTLVKLAH 599 (786)
Q Consensus 526 T~EAIELAr~Ae~aGADAVmViPPyY~kps--~S~eeLv~YFraIAeAt---dLPIiLYNiP~~T-Gv~LSpelL~rLAe 599 (786)
.+...+.++.|+++|++.+.+.+..+.... ...+.+++-++.|++.+ ++.|.+=|.+... -..-+++.+.+|.+
T Consensus 84 ~~~~~~~i~~A~~lG~~~v~~~~g~~~~~~~~~~~~~~~~~l~~l~~~a~~~gi~l~lEn~~~~~~~~~~t~~~~~~li~ 163 (279)
T cd00019 84 IERLKDEIERCEELGIRLLVFHPGSYLGQSKEEGLKRVIEALNELIDKAETKGVVIALETMAGQGNEIGSSFEELKEIID 163 (279)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCCCCCCHHHHHHHHH
Confidence 344567788889999998888766543211 01244567778777654 7888888876542 12345677777763
Q ss_pred ----CCCEEEEEeC
Q psy11975 600 ----HENIRGVKDT 609 (786)
Q Consensus 600 ----iPNVVGIKDS 609 (786)
.|+|.-+=|.
T Consensus 164 ~v~~~~~~g~~lD~ 177 (279)
T cd00019 164 LIKEKPRVGVCIDT 177 (279)
T ss_pred hcCCCCCeEEEEEh
Confidence 4565555454
No 484
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=29.05 E-value=1e+03 Score=28.21 Aligned_cols=167 Identities=13% Similarity=0.042 Sum_probs=0.0
Q ss_pred CCeEEEeCCCCCHHHHHHH-HHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHhcCCCCEEEEeCCCCcCCccCHH
Q psy11975 514 QADLLKPQKHTTTRATIDL-TQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVD 592 (786)
Q Consensus 514 RVPVIaGVGa~ST~EAIEL-Ar~Ae~aGADAVmViPPyY~kps~S~eeLv~YFraIAeAtdLPIiLYNiP~~TGv~LSpe 592 (786)
|.+=++|. ..-.+|.+++ .+.|.++|+|.+-+.-+. ++-....-.-+.+...++-+. -.+-...+...+++
T Consensus 82 r~~N~~G~-~~~~dDvv~~fv~~A~~~Gvd~irif~~l------nd~~n~~~~i~~ak~~G~~v~-~~i~~t~~p~~t~e 153 (467)
T PRK14041 82 RGQNLVGY-RHYADDVVELFVKKVAEYGLDIIRIFDAL------NDIRNLEKSIEVAKKHGAHVQ-GAISYTVSPVHTLE 153 (467)
T ss_pred ccccccCc-ccccchhhHHHHHHHHHCCcCEEEEEEeC------CHHHHHHHHHHHHHHCCCEEE-EEEEeccCCCCCHH
Q ss_pred HHHHHH----hC-CCEEEEEeC-------CHHHHHHHHhhcCCCCEEEEeCCc-----chhhhhhccCC-------cccc
Q psy11975 593 TLVKLA----HH-ENIRGVKDT-------DNIKLANMANQTKDLNFSVFAGSA-----GYLLSGLLVGC-------AGGI 648 (786)
Q Consensus 593 lL~rLA----ei-PNVVGIKDS-------Dl~ri~~ll~~~~~~df~Vf~G~D-----elLL~aL~~GA-------dG~I 648 (786)
.+.+++ +. ...+.|||+ .+.++-+.+++..+-.+.+-+=++ ...+.++.+|+ .|+-
T Consensus 154 ~~~~~a~~l~~~Gad~I~i~Dt~G~l~P~~v~~Lv~~lk~~~~vpI~~H~Hnt~GlA~AN~laAieaGad~vD~sv~~~g 233 (467)
T PRK14041 154 YYLEFARELVDMGVDSICIKDMAGLLTPKRAYELVKALKKKFGVPVEVHSHCTTGLASLAYLAAVEAGADMFDTAISPFS 233 (467)
T ss_pred HHHHHHHHHHHcCCCEEEECCccCCcCHHHHHHHHHHHHHhcCCceEEEecCCCCcHHHHHHHHHHhCCCEEEeeccccC
Q ss_pred ccccccccHHHHHHHHHHHcC---CHHHHHHHHHHhhhhHHHH
Q psy11975 649 NALSAVLGGPICELYDLAKAG---KWEEAMKLQHRLVKPDVTV 688 (786)
Q Consensus 649 sg~aN~~Pel~vaL~eA~~aG---D~eeAreLQ~rL~pLi~~l 688 (786)
.+++|..-+.++.+++...-. |.+...++.+.+.++....
T Consensus 234 ~gagN~atE~lv~~L~~~g~~tgiDl~~L~~~~~~~~~vr~~y 276 (467)
T PRK14041 234 MGTSQPPFESMYYAFRENGKETDFDRKALKFLVEYFTKVREKY 276 (467)
T ss_pred CCCCChhHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHHHHHH
No 485
>PRK01816 hypothetical protein; Provisional
Probab=29.02 E-value=22 Score=35.61 Aligned_cols=31 Identities=39% Similarity=0.456 Sum_probs=24.6
Q ss_pred ccccCccCCCCccccCCCcHHHHHHHHhhcCC
Q psy11975 754 GYYGGRSRRPLPAALKPGGAEKIKQVLTEAGF 785 (786)
Q Consensus 754 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 (786)
=|||.|++.|||..|..-. ..|.|-|.+.|.
T Consensus 80 ~WLGkRa~tpLPpsL~~Wy-~el~~Kl~~~g~ 110 (143)
T PRK01816 80 WWLGKRSVTPLPPALLNWF-YEVREKLQEAGQ 110 (143)
T ss_pred HHhccccCCCCChHHHHHH-HHHHHHHHHcCC
Confidence 4999999999999987544 457777888774
No 486
>cd07900 Adenylation_DNA_ligase_I_Euk Adenylation domain of eukaryotic DNA Ligase I. ATP-dependent polynucleotide ligases catalyze phosphodiester bond formation using nicked nucleic acid substrates with the high energy nucleotide of ATP as a cofactor in a three step reaction mechanism. DNA ligases play a vital role in the diverse processes of DNA replication, recombination and repair. ATP-dependent ligases are present in many organisms such as viruses, bacteriophages, eukarya, archaea and bacteria. Some organisms express a variety of different ligases which appear to be targeted to specific functions. There are three classes of ATP-dependent DNA ligases in eukaryotic cells (I, III and IV). DNA ligase I is required for the ligation of Okazaki fragments during lagging-strand DNA synthesis and for base excision repair (BER). DNA ligases have a highly modular architecture consisting of a unique arrangement of two or more discrete domains. The adenylation and C-terminal oligonucleotide/oligo
Probab=28.98 E-value=1.3e+02 Score=31.40 Aligned_cols=58 Identities=14% Similarity=0.204 Sum_probs=45.5
Q ss_pred CCCCHHHHHHHHHhCCCCCccCCCccccccCCCCCCCCCCCCCccccCCCCeEEEeCCCCCHHHHHHHHHHHHHcCCCEE
Q psy11975 465 TSMPIQKRKSLLRKFPLWPELEPSTSELKRSDRPMSVGPRSVRPSEREWQADLLKPQKHTTTRATIDLTQKAAKAGANAA 544 (786)
Q Consensus 465 ~sLT~dER~~Lle~~~~wve~~a~~~e~~~~~~~~~~~~r~v~veevaGRVPVIaGVGa~ST~EAIELAr~Ae~aGADAV 544 (786)
..++..||+++|+. .+. ...+++.++-.+...+.++..++-+.|.+.|..||
T Consensus 141 ~~~pl~eRr~~L~~---~~~-------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~EGi 192 (219)
T cd07900 141 LKKPLRERRELLHS---LFK-------------------------EVPGRFQFATSKDSEDTEEIQEFLEEAVKNNCEGL 192 (219)
T ss_pred hcCCHHHHHHHHHH---hcC-------------------------CCCCeEEEEEEEecCCHHHHHHHHHHHHHcCCceE
Confidence 57899999999998 332 11245556666667788999999999999999999
Q ss_pred EEcCCC
Q psy11975 545 LILCPY 550 (786)
Q Consensus 545 mViPPy 550 (786)
|+=.+-
T Consensus 193 v~K~~~ 198 (219)
T cd07900 193 MVKTLD 198 (219)
T ss_pred EEecCC
Confidence 998765
No 487
>TIGR01283 nifE nitrogenase molybdenum-iron cofactor biosynthesis protein NifE. This protein is part of the NifEN complex involved in biosynthesis of the molybdenum-iron cofactor used by the homologous NifDK complex of nitrogenase. In a few species, the protein is found as a NifEN fusion protein.
Probab=28.87 E-value=2e+02 Score=33.34 Aligned_cols=110 Identities=13% Similarity=0.114 Sum_probs=62.9
Q ss_pred EEEeCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHhcCCCCEEEEeCCCCcCC-----ccCH
Q psy11975 517 LLKPQKHTTTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNI-----DISV 591 (786)
Q Consensus 517 VIaGVGa~ST~EAIELAr~Ae~aGADAVmViPPyY~kps~S~eeLv~YFraIAeAtdLPIiLYNiP~~TGv-----~LSp 591 (786)
||.| +...+.++|+.+..-. ..++|+|++-.--. +--|++..-.+++-+..++||+..+.|+..|. ....
T Consensus 101 vVfG-g~~kL~~~I~e~~~~~--~P~~I~V~ttC~~~--lIGdDi~~v~~e~~~~~~~~vi~v~t~gf~g~~~~G~~~a~ 175 (456)
T TIGR01283 101 VIFG-GEKKLFHAIREIVERY--HPPAVFVYSTCVPG--LIGDDLEAVCKAAAEKTGIPVIPVDSEGFYGSKNLGNKLAC 175 (456)
T ss_pred eEeC-CHHHHHHHHHHHHHhC--CCCEEEEECCChHH--HhcCCHHHHHHHHHHHhCCCEEEEECCCCccchhHHHHHHH
Confidence 7778 7778888888766643 47887777643211 11344555555555556899999999987553 2222
Q ss_pred HHHHHHH-h--C------------CCEEEEEeC--CHHHHHHHHhhcCCCCEE-EEeCC
Q psy11975 592 DTLVKLA-H--H------------ENIRGVKDT--DNIKLANMANQTKDLNFS-VFAGS 632 (786)
Q Consensus 592 elL~rLA-e--i------------PNVVGIKDS--Dl~ri~~ll~~~~~~df~-Vf~G~ 632 (786)
+.+.+.. . . =||+|-... |+..+.++++. .+=++. ++.|.
T Consensus 176 ~al~~~~~~~~~~~~~~~~~~~~~VNiiG~~~~~~d~~el~~lL~~-~Gl~v~~~~~~~ 233 (456)
T TIGR01283 176 DALLKHVIGTREPEPIPVGTTVHDINLIGEFNVAGEFWHVKPLLEK-LGIRVLATITGD 233 (456)
T ss_pred HHHHHHHhccCCcccccccCCCCcEEEEcCCCCcccHHHHHHHHHH-cCCeEEEEeCCC
Confidence 2233222 1 1 245564444 77788888873 343433 34443
No 488
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=28.84 E-value=2.5e+02 Score=28.87 Aligned_cols=33 Identities=18% Similarity=0.112 Sum_probs=19.5
Q ss_pred eEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEcC
Q psy11975 516 DLLKPQKHTTTRATIDLTQKAAKAGANAALILC 548 (786)
Q Consensus 516 PVIaGVGa~ST~EAIELAr~Ae~aGADAVmViP 548 (786)
+||+..+..+.++....+|.|.++|||.|=...
T Consensus 120 kvI~e~~~l~~~~i~~a~ria~e~GaD~IKTsT 152 (203)
T cd00959 120 KVILETGLLTDEEIIKACEIAIEAGADFIKTST 152 (203)
T ss_pred EEEEecCCCCHHHHHHHHHHHHHhCCCEEEcCC
Confidence 345566655555666666666666666555543
No 489
>PLN02417 dihydrodipicolinate synthase
Probab=28.84 E-value=1.8e+02 Score=31.44 Aligned_cols=58 Identities=16% Similarity=-0.060 Sum_probs=45.4
Q ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHhcC--CCCEEEE
Q psy11975 522 KHTTTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNS--PIPVIIY 579 (786)
Q Consensus 522 Ga~ST~EAIELAr~Ae~aGADAVmViPPyY~kps~S~eeLv~YFraIAeAt--dLPIiLY 579 (786)
+..+.+...+++++..+.|++++++.--.--.+.++.+|-.+..+.+.+.+ .+||+.-
T Consensus 17 g~iD~~~~~~~i~~l~~~Gv~Gi~~~GstGE~~~ls~~Er~~~~~~~~~~~~~~~pvi~g 76 (280)
T PLN02417 17 GRFDLEAYDSLVNMQIENGAEGLIVGGTTGEGQLMSWDEHIMLIGHTVNCFGGKIKVIGN 76 (280)
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEECccCcchhhCCHHHHHHHHHHHHHHhCCCCcEEEE
Confidence 356788899999999999999999876554334467999888888888776 3788754
No 490
>PHA03420 E4 protein; Provisional
Probab=28.76 E-value=33 Score=33.46 Aligned_cols=13 Identities=46% Similarity=0.992 Sum_probs=6.2
Q ss_pred CCCCCCCCCCCCC
Q psy11975 202 RSHHHSHHHRSHS 214 (786)
Q Consensus 202 ~~~~~~~~~~~~~ 214 (786)
|.|||-|||.+.+
T Consensus 51 ~phH~PH~Hq~~~ 63 (137)
T PHA03420 51 RPHHHPHRHQQDD 63 (137)
T ss_pred CCCCCCccccccc
Confidence 4445555554443
No 491
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=28.74 E-value=1.7e+02 Score=32.43 Aligned_cols=76 Identities=12% Similarity=0.143 Sum_probs=58.2
Q ss_pred EeCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHhcCCCCEEEEeCCCCcCCccCHHHHHHHH
Q psy11975 519 KPQKHTTTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLA 598 (786)
Q Consensus 519 aGVGa~ST~EAIELAr~Ae~aGADAVmViPPyY~kps~S~eeLv~YFraIAeAtdLPIiLYNiP~~TGv~LSpelL~rLA 598 (786)
......+.+.+....+.|++.++..|+-+.|-..+.. .-+.+....+.+|+.+++||.|.--= | -+.+.+.+-.
T Consensus 21 ~AfN~~n~e~~~avi~AAee~~sPvIlq~s~~~~~~~-~~~~~~~~~~~~a~~~~VPValHLDH---g--~~~e~i~~ai 94 (286)
T PRK12738 21 PAFNIHNAETIQAILEVCSEMRSPVILAGTPGTFKHI-ALEEIYALCSAYSTTYNMPLALHLDH---H--ESLDDIRRKV 94 (286)
T ss_pred EEEEeCCHHHHHHHHHHHHHHCCCEEEEcCcchhhhC-CHHHHHHHHHHHHHHCCCCEEEECCC---C--CCHHHHHHHH
Confidence 4555667899999999999999999998888665432 37889999999999999999987531 2 2466776655
Q ss_pred hC
Q psy11975 599 HH 600 (786)
Q Consensus 599 ei 600 (786)
+.
T Consensus 95 ~~ 96 (286)
T PRK12738 95 HA 96 (286)
T ss_pred Hc
Confidence 53
No 492
>PRK04302 triosephosphate isomerase; Provisional
Probab=28.63 E-value=6.9e+02 Score=26.02 Aligned_cols=47 Identities=17% Similarity=0.183 Sum_probs=29.9
Q ss_pred CHHHHHHHHHHHHHcCCC---EEEEcCCCCCCCCCCHHHHHHHHHHHHhcCCCCEEEEeCCC
Q psy11975 525 TTRATIDLTQKAAKAGAN---AALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTF 583 (786)
Q Consensus 525 ST~EAIELAr~Ae~aGAD---AVmViPPyY~kps~S~eeLv~YFraIAeAtdLPIiLYNiP~ 583 (786)
+..++.++++...++..+ -+++.||+ .+.+.+++.+++|++.+|+..
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~------------~~l~~v~~~~~i~v~aq~~~~ 66 (223)
T PRK04302 17 TGKDALEIAKAAEKVSKETGVRIAVAPQA------------LDIRRVAEEVDIPVYAQHVDP 66 (223)
T ss_pred CHHHHHHHHHHHHhccccCCCEEEEECCH------------HHHHHHHHhcCCeEEeccCCC
Confidence 578888888777664222 23344433 344556666789999999854
No 493
>cd01976 Nitrogenase_MoFe_alpha Nitrogenase_MoFe_alpha_II: Nitrogenase MoFe protein, beta subunit. A group of proteins similar to the alpha subunit of the MoFe protein of the molybdenum (Mo-) nitrogenase. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Mo-nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=28.62 E-value=4.2e+02 Score=30.56 Aligned_cols=99 Identities=12% Similarity=0.024 Sum_probs=51.3
Q ss_pred EEEeCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHhcCCCCEEEEeCCCCcCCcc------C
Q psy11975 517 LLKPQKHTTTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDI------S 590 (786)
Q Consensus 517 VIaGVGa~ST~EAIELAr~Ae~aGADAVmViPPyY~kps~S~eeLv~YFraIAeAtdLPIiLYNiP~~TGv~L------S 590 (786)
+|.|- ...+.++|+.+..-.+ .+++|+|+.-.-.. +-.|++....+++.+..++||+..+.|+..|... .
T Consensus 78 vVfGg-~~kL~~~I~~~~~~~~-p~~~I~V~tTC~~~--iIGdDi~~v~~~~~~~~~~pvi~v~t~gf~g~s~~~G~~~a 153 (421)
T cd01976 78 IVFGG-DKKLAKAIDEAYELFP-LNKGISVQSECPVG--LIGDDIEAVARKASKELGIPVVPVRCEGFRGVSQSLGHHIA 153 (421)
T ss_pred eecCC-HHHHHHHHHHHHHhCC-CccEEEEECCChHH--HhccCHHHHHHHHHHhhCCCEEEEeCCCccCCcccHHHHHH
Confidence 55553 4466666655444432 22666666532211 1134445555555555678888888888766322 1
Q ss_pred HHHH-HHHHh-C---------CCEEEEEeC--CHHHHHHHHh
Q psy11975 591 VDTL-VKLAH-H---------ENIRGVKDT--DNIKLANMAN 619 (786)
Q Consensus 591 pelL-~rLAe-i---------PNVVGIKDS--Dl~ri~~ll~ 619 (786)
.+.+ ..|.. . =||+|-+.. |+..+.++++
T Consensus 154 ~~ai~~~l~~~~~~~~~~~~~VNiiG~~~~~~d~~el~~lL~ 195 (421)
T cd01976 154 NDAIRDHILGKRNEFEPTPYDVNIIGDYNIGGDAWASRILLE 195 (421)
T ss_pred HHHHHHHHhccCCccCCCCCeEEEEecCCCCccHHHHHHHHH
Confidence 2222 22321 1 156664444 7777777776
No 494
>PRK03317 histidinol-phosphate aminotransferase; Provisional
Probab=28.43 E-value=7.4e+02 Score=27.20 Aligned_cols=90 Identities=12% Similarity=0.113 Sum_probs=54.0
Q ss_pred EEEeCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCC--------------CCHH-HH-HHHHHHHHhcCCCCEEEEe
Q psy11975 517 LLKPQKHTTTRATIDLTQKAAKAGANAALILCPYYFQKK--------------MTED-LI-YEHFISVADNSPIPVIIYN 580 (786)
Q Consensus 517 VIaGVGa~ST~EAIELAr~Ae~aGADAVmViPPyY~kps--------------~S~e-eL-v~YFraIAeAtdLPIiLYN 580 (786)
|+++.| ..+++.++-.+.----|.|++..|.|.... ..++ ++ .+.+++..+.-+.-+++.+
T Consensus 91 I~it~G---~~~~l~~~~~~~~~~gd~v~v~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~i~l~ 167 (368)
T PRK03317 91 VWAANG---SNEILQQLLQAFGGPGRTALGFVPSYSMHPIIARGTHTEWVEGPRAADFTLDVDAAVAAIAEHRPDVVFLT 167 (368)
T ss_pred EEECCC---HHHHHHHHHHHhcCCCCEEEEeCCChHHHHHHHHhcCCeeEEcccCCCCCCCHHHHHHHHhccCCCEEEEe
Confidence 666655 477888777765333477888888773210 0000 11 1223333322234577788
Q ss_pred CCCC-cCCccCHHHHHHHHhCCCEEEEEeC
Q psy11975 581 NTFV-TNIDISVDTLVKLAHHENIRGVKDT 609 (786)
Q Consensus 581 iP~~-TGv~LSpelL~rLAeiPNVVGIKDS 609 (786)
+|.. ||..++.+.+.+|++.-++.=|=|+
T Consensus 168 ~p~NPtG~~~~~~~l~~l~~~~~~~lI~DE 197 (368)
T PRK03317 168 SPNNPTGTALPLDDVEAILDAAPGIVVVDE 197 (368)
T ss_pred CCCCCCCCCCCHHHHHHHHHHCCceEEEeC
Confidence 8876 8999999999999964345555566
No 495
>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=28.38 E-value=4.4e+02 Score=28.69 Aligned_cols=103 Identities=17% Similarity=0.185 Sum_probs=66.5
Q ss_pred CCeEEEeC-CCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHhcCCCCEEEEeCCCCcCCccCHH
Q psy11975 514 QADLLKPQ-KHTTTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVD 592 (786)
Q Consensus 514 RVPVIaGV-Ga~ST~EAIELAr~Ae~aGADAVmViPPyY~kps~S~eeLv~YFraIAeAtdLPIiLYNiP~~TGv~LSpe 592 (786)
++++.+=+ ++.+.++++++++..++.|++.+ =-|+- +. -.+.+++|.+++++||..-. ...+++
T Consensus 177 ~~~l~vD~n~~~~~~~A~~~~~~l~~~~l~~i--EeP~~--~~-----d~~~~~~L~~~~~ipIa~~E------~~~~~~ 241 (316)
T cd03319 177 DARLRVDANQGWTPEEAVELLRELAELGVELI--EQPVP--AG-----DDDGLAYLRDKSPLPIMADE------SCFSAA 241 (316)
T ss_pred CCeEEEeCCCCcCHHHHHHHHHHHHhcCCCEE--ECCCC--CC-----CHHHHHHHHhcCCCCEEEeC------CCCCHH
Confidence 45555522 45778999999999999987655 44542 11 14456788889999988743 246678
Q ss_pred HHHHHHh--CCCEEEEEeC---CHHHHHHHHhhcCCCCEEEEeC
Q psy11975 593 TLVKLAH--HENIRGVKDT---DNIKLANMANQTKDLNFSVFAG 631 (786)
Q Consensus 593 lL~rLAe--iPNVVGIKDS---Dl~ri~~ll~~~~~~df~Vf~G 631 (786)
.+.++.+ .-.++-+|-+ .+....++.+....-++.+..|
T Consensus 242 ~~~~~~~~~~~d~v~~~~~~~GGi~~~~~~~~~a~~~gi~~~~~ 285 (316)
T cd03319 242 DAARLAGGGAYDGINIKLMKTGGLTEALRIADLARAAGLKVMVG 285 (316)
T ss_pred HHHHHHhcCCCCEEEEeccccCCHHHHHHHHHHHHHcCCCEEEE
Confidence 8888875 4678888877 4555554443222234555543
No 496
>PLN02304 probable pectinesterase
Probab=28.36 E-value=25 Score=40.25 Aligned_cols=13 Identities=15% Similarity=0.217 Sum_probs=9.0
Q ss_pred CcEEEEEeCCCCC
Q psy11975 385 GRVWVKWFGMSNE 397 (786)
Q Consensus 385 g~~~V~fFG~~~~ 397 (786)
..+.|.|.|..+.
T Consensus 198 ~fy~C~f~G~QDT 210 (379)
T PLN02304 198 AFWGCGFFGAQDT 210 (379)
T ss_pred EEEeceEecccce
Confidence 3567888888763
No 497
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=28.27 E-value=2.5e+02 Score=31.31 Aligned_cols=28 Identities=18% Similarity=0.319 Sum_probs=20.4
Q ss_pred CCeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEE
Q psy11975 514 QADLLKPQKHTTTRATIDLTQKAAKAGANAALI 546 (786)
Q Consensus 514 RVPVIaGVGa~ST~EAIELAr~Ae~aGADAVmV 546 (786)
.++||+|.. .+.+.|+.+.++|||+|.+
T Consensus 135 ~v~Vi~G~v-----~t~~~A~~l~~aGaD~I~v 162 (325)
T cd00381 135 NVDVIAGNV-----VTAEAARDLIDAGADGVKV 162 (325)
T ss_pred CceEEECCC-----CCHHHHHHHHhcCCCEEEE
Confidence 477887433 3456677788899999987
No 498
>PRK01533 histidinol-phosphate aminotransferase; Validated
Probab=28.19 E-value=5.2e+02 Score=28.77 Aligned_cols=118 Identities=17% Similarity=0.137 Sum_probs=62.6
Q ss_pred EEEeCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCC-------------------CCHHHHHHHHHHHHhcCCCCEE
Q psy11975 517 LLKPQKHTTTRATIDLTQKAAKAGANAALILCPYYFQKK-------------------MTEDLIYEHFISVADNSPIPVI 577 (786)
Q Consensus 517 VIaGVGa~ST~EAIELAr~Ae~aGADAVmViPPyY~kps-------------------~S~eeLv~YFraIAeAtdLPIi 577 (786)
|+++.|+ .+++.++-.+.--.-|.|++..|.|.... ++.+++.+. +.+ +..++
T Consensus 84 I~vt~Gs---~e~i~~~~~~l~~~gd~vlv~~P~y~~~~~~~~~~g~~v~~v~~~~~~~d~~~l~~~---~~~--~~~~v 155 (366)
T PRK01533 84 VLCGSGL---DEVIQIISRAVLKAGDNIVTAGATFPQYRHHAIIEGCEVKEVALNNGVYDLDEISSV---VDN--DTKIV 155 (366)
T ss_pred EEECCCH---HHHHHHHHHHhcCCCCEEEEcCCcHHHHHHHHHHcCCEEEEeecCCCCcCHHHHHHH---hCc--CCcEE
Confidence 6666555 67777666654223377888888663210 112222211 111 34566
Q ss_pred EEeCCCC-cCCccCHHHHHHHHhC--CCEEEEEeC---CHHH------HHHHHhhcCCCCEEEEeCCcchh-hhhhccCC
Q psy11975 578 IYNNTFV-TNIDISVDTLVKLAHH--ENIRGVKDT---DNIK------LANMANQTKDLNFSVFAGSAGYL-LSGLLVGC 644 (786)
Q Consensus 578 LYNiP~~-TGv~LSpelL~rLAei--PNVVGIKDS---Dl~r------i~~ll~~~~~~df~Vf~G~DelL-L~aL~~GA 644 (786)
+.++|.. ||..++.+.+.+|++. .+..-|=|+ ++.. ....+. ..+++-++.+..-.+ +++++.|.
T Consensus 156 ~i~~P~NPTG~~~~~~~l~~l~~~~~~~~~~iiDe~y~~~~~~~~~~~~~~~~~--~~~~vi~~~SfSK~~~l~GlRiG~ 233 (366)
T PRK01533 156 WICNPNNPTGTYVNDRKLTQFIEGISENTLIVIDEAYYEYVTAKDFPETLPLLE--KHKNILVLRTFSKAYGLASFRVGY 233 (366)
T ss_pred EEeCCCCCCCCCcCHHHHHHHHHhCCCCCEEEEEccHHHhhccccCcchhHHhc--cCCCEEEEeCchHHhcChHHHHhH
Confidence 6677764 8999999999999852 232334466 3211 111111 224555555554443 46676653
No 499
>cd01311 PDC_hydrolase 2-pyrone-4,6-dicarboxylic acid (PDC) hydrolase hydrolyzes PDC to yield 4-oxalomesaconic acid (OMA) or its tautomer, 4-carboxy-2-hydroxymuconic acid (CHM). This reaction is part of the protocatechuate (PCA) 4,5-cleavage pathway. PCA is one of the most important intermediate metabolites in the bacterial pathways for various phenolic compounds, including lignin, which is the most abundant aromatic material in nature.
Probab=28.07 E-value=1.9e+02 Score=30.58 Aligned_cols=67 Identities=15% Similarity=0.233 Sum_probs=41.0
Q ss_pred HHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHhcCC--CCEEEEeCCCCcCCccCHHHHHHHHhCCCEEEEEe
Q psy11975 531 DLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSP--IPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKD 608 (786)
Q Consensus 531 ELAr~Ae~aGADAVmViPPyY~kps~S~eeLv~YFraIAeAtd--LPIiLYNiP~~TGv~LSpelL~rLAeiPNVVGIKD 608 (786)
++.+....+|+++.+++.+...... .+ |+.+.++.-+ +.+++.| |... ..+.+.++ ..++|+|||.
T Consensus 32 ~l~~~m~~~gV~~aV~vq~~~~~~~--n~----~~~~~~~~~~r~~g~~~~~-p~~~----~~~~l~~~-~~~g~rGvRl 99 (263)
T cd01311 32 DLRALRSTLGIDRVVIVQASIYGAD--NS----NLLDALASNGKARGGATVD-PRTT----TDAELKEM-HDAGVRGVRF 99 (263)
T ss_pred HHHHHHHHhCCCcEEEeCccccCCc--hH----HHHHHHhhCCCeEEEEEEC-CCCC----CHHHHHHH-HHCCCeEEEE
Confidence 4555566789999999887543332 33 3333333333 4556655 5321 36888888 4489999995
Q ss_pred C
Q psy11975 609 T 609 (786)
Q Consensus 609 S 609 (786)
-
T Consensus 100 ~ 100 (263)
T cd01311 100 N 100 (263)
T ss_pred e
Confidence 3
No 500
>PRK12928 lipoyl synthase; Provisional
Probab=28.02 E-value=2.8e+02 Score=30.50 Aligned_cols=83 Identities=17% Similarity=0.165 Sum_probs=0.0
Q ss_pred CHHHHHHHHHhCCCCCccCCCccccccCCCCCCCCCCCCCccccCCCCeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEc
Q psy11975 468 PIQKRKSLLRKFPLWPELEPSTSELKRSDRPMSVGPRSVRPSEREWQADLLKPQKHTTTRATIDLTQKAAKAGANAALIL 547 (786)
Q Consensus 468 T~dER~~Lle~~~~wve~~a~~~e~~~~~~~~~~~~r~v~veevaGRVPVIaGVGa~ST~EAIELAr~Ae~aGADAVmVi 547 (786)
|.++++++++. +.+..+ ...-+.-+|+|. +.+-+|.++..+.+.++|+|.+-+.
T Consensus 186 t~e~~le~l~~---ak~~gp----------------------~i~~~s~iIvG~-GET~ed~~etl~~Lrel~~d~v~i~ 239 (290)
T PRK12928 186 DYQRSLDLLAR---AKELAP----------------------DIPTKSGLMLGL-GETEDEVIETLRDLRAVGCDRLTIG 239 (290)
T ss_pred CHHHHHHHHHH---HHHhCC----------------------CceecccEEEeC-CCCHHHHHHHHHHHHhcCCCEEEEE
Q ss_pred CCCCCCCC--------CCHHHHHHHHHHHHhcCCCCEEE
Q psy11975 548 CPYYFQKK--------MTEDLIYEHFISVADNSPIPVII 578 (786)
Q Consensus 548 PPyY~kps--------~S~eeLv~YFraIAeAtdLPIiL 578 (786)
+ |..|+ .-..+-++.|+++|...+..-+.
T Consensus 240 ~--Yl~p~~~~~~v~~~~~~~~f~~~~~~~~~~g~~~~~ 276 (290)
T PRK12928 240 Q--YLRPSLAHLPVQRYWTPEEFEALGQIARELGFSHVR 276 (290)
T ss_pred c--CCCCCccCCceeeccCHHHHHHHHHHHHHcCCceeE
Done!