RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11975
(786 letters)
>3qfe_A Putative dihydrodipicolinate synthase family PROT; seattle
structural genomics center for infectious disease, S
coccidioides, valley fever; 2.35A {Coccidioides immitis}
Length = 318
Score = 189 bits (483), Expect = 2e-54
Identities = 66/232 (28%), Positives = 109/232 (46%), Gaps = 25/232 (10%)
Query: 526 TRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTF-- 583
TR ++ A+ AGAN L+L P YF K T +I F V+ SP+PV+IYN F
Sbjct: 92 TRQVLEHINDASVAGANYVLVLPPAYFGKATTPPVIKSFFDDVSCQSPLPVVIYN--FPG 149
Query: 584 -VTNIDISVDTLVKLAH-HENIRGVKD-TDNI-KLANMANQTKDLNFSVFAGSAGYLLSG 639
ID+ D + +A + N+ GVK ++ K+ +A FSVF G + +L+ G
Sbjct: 150 VCNGIDLDSDMITTIARKNPNVVGVKLTCASVGKITRLAATLPPAAFSVFGGQSDFLIGG 209
Query: 640 LLVGCAGGINALSAVLGGPICELYDLAKAGKWEEAMKLQHRLVKPDVTVRNVLLMKEMGV 699
L VG AG I A + V + ++Y+L KAGK ++AM+L + + + G+
Sbjct: 210 LSVGSAGCIAAFANVFPKTVSKIYELYKAGKVDQAMELHRKAALAESPC-------KSGI 262
Query: 700 PGVRAAMELYGYYGG---------RSRRPLPAALKPGGAEKIKQVLTEAGFL 742
+ A ++ R R+P +++++V+ E +
Sbjct: 263 ATTKYAAAIFSAKAAGIEDAEEKLRPRKPYD-PPSEAAKQEVRKVMAEVAAI 313
Score = 36.1 bits (84), Expect = 0.032
Identities = 5/34 (14%), Positives = 13/34 (38%), Gaps = 1/34 (2%)
Query: 288 SLSSSTQLDLTGVFSALPTPF-REDEEIDFEKFK 320
S ++ G++ T F + + +D +
Sbjct: 2 PGSMVPRVPQPGIWCPAVTFFDSKTDTLDLASQE 35
>3eb2_A Putative dihydrodipicolinate synthetase; lysine biosynthesis,
pyruvate, TIM barrel, NYSGXRC, PSI2., structural
genomics; HET: PGE; 2.04A {Rhodopseudomonas palustris}
Length = 300
Score = 168 bits (428), Expect = 5e-47
Identities = 60/228 (26%), Positives = 104/228 (45%), Gaps = 19/228 (8%)
Query: 524 TTTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTF 583
T+ + + K GA+ L + YF + + I +F ++AD IPV+IY N
Sbjct: 83 TSVADAVAQAKLYEKLGADGILAILEAYF--PLKDAQIESYFRAIADAVEIPVVIYTNPQ 140
Query: 584 VTNIDISVDTLVKLAHHENIRGVKD-TDNI-KLANMANQTKDLNFSVFAGSAGYLLSGLL 641
D+++D + +LA H IR +KD + N +L ++ N+ D VF+ SA + +L
Sbjct: 141 FQRSDLTLDVIARLAEHPRIRYIKDASTNTGRLLSIINRCGD-ALQVFSASAHIPAAVML 199
Query: 642 VGCAGGINALSAVLGGPICELYDLAKAGKWEEAMKLQHRLVKPDVTVRNVLLMKEMGVP- 700
+G G + + + LY+L KA +W+EA+ LQ +L + + +
Sbjct: 200 IGGVGWMAGPACIAPRQSVALYELCKAQRWDEALMLQRKLWR---------VNEAFAKFN 250
Query: 701 ---GVRAAMELYGYYGGRSRRPLPAALKPGGAEKIKQVLTEAGFLVPG 745
++A + L GY G P AAL + +++VL E
Sbjct: 251 LAACIKAGLALQGYDVGDPIPPQ-AALTAEERKAVEKVLAEIAEGHHH 297
Score = 38.7 bits (91), Expect = 0.005
Identities = 7/29 (24%), Positives = 11/29 (37%)
Query: 295 LDLTGVFSALPTPFREDEEIDFEKFKFNV 323
LD GVF L +P + + +
Sbjct: 3 LDFHGVFPYLVSPVDAEGRVRADVMGRLC 31
>3s5o_A 4-hydroxy-2-oxoglutarate aldolase, mitochondrial; beta barrel,
schiff base, hydroxyproline metabolis; HET: KPI; 1.97A
{Homo sapiens} PDB: 3s5n_A
Length = 307
Score = 168 bits (427), Expect = 7e-47
Identities = 85/222 (38%), Positives = 138/222 (62%), Gaps = 14/222 (6%)
Query: 526 TRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFV- 584
T+AT+++T A+ GA+AA+++ P Y++ +M+ + H+ VAD SPIPV++Y+ V
Sbjct: 95 TQATVEMTVSMAQVGADAAMVVTPCYYRGRMSSAALIHHYTKVADLSPIPVVLYS---VP 151
Query: 585 --TNIDISVDTLVKLAHHENIRGVKDT--DNIKLANMANQTKDLNFSVFAGSAGYLLSGL 640
T +D+ VD +V L+ H NI G+ D+ D ++ + ++T+ +F V AGSAG+L++
Sbjct: 152 ANTGLDLPVDAVVTLSQHPNIVGMXDSGGDVTRIGLIVHKTRKQDFQVLAGSAGFLMASY 211
Query: 641 LVGCAGGINALSAVLGGPICELYDLAKAGKWEEAMKLQHRLVKPDVTVRNVLLMKEMGVP 700
+G GG+ AL+ VLG +C+L L G+WE+A KLQHRL++P N + + G+P
Sbjct: 212 ALGAVGGVCALANVLGAQVCQLERLCCTGQWEDAQKLQHRLIEP-----NAAVTRRFGIP 266
Query: 701 GVRAAMELYGYYGGRSRRPLPAALKPGGAEKIKQVLTEAGFL 742
G++ M+ +GYYGG R PL L P E ++ T G+L
Sbjct: 267 GLKKIMDWFGYYGGPCRAPL-QELSPAEEEALRMDFTSNGWL 307
Score = 43.5 bits (103), Expect = 2e-04
Identities = 10/41 (24%), Positives = 21/41 (51%)
Query: 286 TMSLSSSTQLDLTGVFSALPTPFREDEEIDFEKFKFNVSKW 326
+ ++D+ G++ + TPF E+D+ K + N+ K
Sbjct: 4 GSASGEGKKVDIAGIYPPVTTPFTATAEVDYGKLEENLHKL 44
>2nuw_A 2-keto-3-deoxygluconate/2-keto-3-deoxy-6-phospho aldolase; TIM
barrel, lyase; 1.80A {Sulfolobus acidocaldarius dsm 639}
PDB: 2nux_A 2nuy_A
Length = 288
Score = 156 bits (398), Expect = 5e-43
Identities = 43/224 (19%), Positives = 87/224 (38%), Gaps = 17/224 (7%)
Query: 526 TRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVT 585
++L + + + PYYF ++ E + +++ +A S + IYN T
Sbjct: 77 LNDVMELVKFSNEMDILGVSSHSPYYF-PRLPEKFLAKYYEEIARISSHSLYIYNYPAAT 135
Query: 586 NIDISVDTLVKLAHHENIRGVKD-TDNI-KLANMANQTKDLNFSVFAGSAGYLLSGLLVG 643
DI L L ++G+KD ++ V+ GS + L+
Sbjct: 136 GYDIPPSILKSLP----VKGIKDTNQDLAHSLEYKLNLPG--VKVYNGSNTLIYY-SLLS 188
Query: 644 CAGGINALSAVLGGPICELYDLAKAGKWEEAMKLQHRLVKPDVTVRNVLLMKEMGVPGVR 703
G + + + + I + DL K GK ++A++LQ + + + ++L + +
Sbjct: 189 LDGVVASFTNFIPEVIVKQRDLIKQGKLDDALRLQELINR----LADILRK-YGSISAIY 243
Query: 704 AAM-ELYGYYGGRSRRPLPAALKPGGAEKIKQVLTEAGFLVPGV 746
+ E GY G R P+ L A +K+ + + +
Sbjct: 244 VLVNEFQGYDVGYPRPPI-FPLTDEEALSLKREIEPLKRKIQEL 286
Score = 34.9 bits (81), Expect = 0.078
Identities = 5/21 (23%), Positives = 12/21 (57%)
Query: 300 VFSALPTPFREDEEIDFEKFK 320
+ S + TPF + +++ + K
Sbjct: 3 IISPIITPFDKQGKVNVDALK 23
>1f6k_A N-acetylneuraminate lyase; beta barrel; 1.60A {Haemophilus
influenzae} SCOP: c.1.10.1 PDB: 1f5z_A 1f6p_A 1f73_A*
1f74_A* 1f7b_A*
Length = 293
Score = 156 bits (398), Expect = 5e-43
Identities = 40/218 (18%), Positives = 91/218 (41%), Gaps = 12/218 (5%)
Query: 526 TRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVT 585
+ ++L + A + G + + P+Y K + I ++ ++ + +I+Y+ F+T
Sbjct: 85 LKEAVELGKYATELGYDCLSAVTPFY--YKFSFPEIKHYYDTIIAETGSNMIVYSIPFLT 142
Query: 586 NIDISVDTLVKLAHHENIRGVKD-TDNI-KLANMANQTKDLNFSVFAGSAGYLLSGLLVG 643
+++ ++ +L + + GVK + L + + ++AG +L +G
Sbjct: 143 GVNMGIEQFGELYKNPKVLGVKFTAGDFYLLERLKKAYPN--HLIWAGFDEMMLPAASLG 200
Query: 644 CAGGINALSAVLGGPICELYDLAKAGKWEEAMKLQHRLVKPDVTVRNVLLMKEMGVPGVR 703
G I + V G ++++L KAGK +EA+++QH + +L ++
Sbjct: 201 VDGAIGSTFNVNGVRARQIFELTKAGKLKEALEIQHVTND----LIEGILA-NGLYLTIK 255
Query: 704 AAMELYGYYGGRSRRPLPAALKPGGAEKIKQVLTEAGF 741
++L G G R P+ + + L
Sbjct: 256 ELLKLEGVDAGYCREPM-TSKATAEQVAKAKDLKAKFL 292
Score = 39.5 bits (93), Expect = 0.003
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 296 DLTGVFSALPTPFREDEEIDFEKFK 320
DL G+FSAL F ED I+ + +
Sbjct: 3 DLKGIFSALLVSFNEDGTINEKGLR 27
>2v9d_A YAGE; dihydrodipicolinic acid synthase, N-acetyl neuraminate lyase,
NAL, lyase, DHDPS, prophage; 2.15A {Escherichia coli}
PDB: 2v8z_A 3nev_A* 3n2x_A*
Length = 343
Score = 158 bits (401), Expect = 7e-43
Identities = 59/236 (25%), Positives = 102/236 (43%), Gaps = 27/236 (11%)
Query: 526 TRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFV- 584
R TI+L+Q A +AGA+ +++ PYY K++E + +F VAD+ +PV++YN
Sbjct: 112 ARETIELSQHAQQAGADGIVVINPYY--WKVSEANLIRYFEQVADSVTLPVMLYN---FP 166
Query: 585 --TNIDISVDTLVKLAH-HENIRGVKD-TDNI-KLANMANQTKDL--NFSVFAGSAGYLL 637
T D++ + LA NI G+KD D++ L +M + K +F+V G +L
Sbjct: 167 ALTGQDLTPALVKTLADSRSNIIGIKDTIDSVAHLRSMIHTVKGAHPHFTVLCGYDDHLF 226
Query: 638 SGLLVGCAGGINALSAVLGGPICELYDLAKAGKWEEAMKLQHRLVKPDVTVRNVLLMKEM 697
+ LL+G G I+A L + G +A L++ + +
Sbjct: 227 NTLLLGGDGAISASGNFAPQVSVNLLKAWRDGDVAKAAGYHQTLLQ---------IPQMY 277
Query: 698 -----GVPGVRAAMELYGYYGGRSRRPLPAALKPGGAEKIKQVLTEAGFLVPGVRA 748
V ++ A+ L G P + L ++K +L + RA
Sbjct: 278 QLDTPFVNVIKEAIVLCGRPVSTHVLPPASPLDEPRKAQLKTLLQQLKLCCGRTRA 333
Score = 38.0 bits (89), Expect = 0.009
Identities = 6/24 (25%), Positives = 10/24 (41%)
Query: 297 LTGVFSALPTPFREDEEIDFEKFK 320
TG+ + T F D ++D
Sbjct: 32 FTGIIPPVSTIFTADGQLDKPGTA 55
>2r91_A 2-keto-3-deoxy-(6-phospho-)gluconate aldolase; TIM barrel,
thermophilic, lyase; 2.00A {Thermoproteus tenax} PDB:
2r94_A
Length = 286
Score = 147 bits (373), Expect = 1e-39
Identities = 51/221 (23%), Positives = 79/221 (35%), Gaps = 21/221 (9%)
Query: 526 TRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFV- 584
I L + A GA A L PYYF + +E I ++F + IPV +YN
Sbjct: 76 ADEAIALAKYAESRGAEAVASLPPYYFPRL-SERQIAKYFRDLCSAVSIPVFLYN---YP 131
Query: 585 --TNIDISVDTLVKLAHHENIRGVKD-TDNI-KLANMANQTKDLNFSVFAGSAGYLLSGL 640
D+ +L IRGVKD +++ V+ GS + +
Sbjct: 132 AAVGRDVDARAAKELG---CIRGVKDTNESLAHTLAYKRYLPQ--ARVYNGSDSLVFASF 186
Query: 641 LVGCAGGINALSAVLGGPICELYDLAKAGKWEEAMKLQHRLVKPDVTVRNVLLMKEMGVP 700
V G + + + L + + D AG E A LQ L + +
Sbjct: 187 AVRLDGVVASSANYLPELLAGIRDAVAAGDIERARSLQFLLDE----IVES-ARHIGYAA 241
Query: 701 GVRAAME-LYGYYGGRSRRPLPAALKPGGAEKIKQVLTEAG 740
V +E GY G R P+ L P ++ + +A
Sbjct: 242 AVYELVEIFQGYEAGEPRGPV-YPLDPEEKAWLRAAVAKAK 281
Score = 28.3 bits (64), Expect = 8.5
Identities = 6/21 (28%), Positives = 10/21 (47%), Gaps = 1/21 (4%)
Query: 300 VFSALPTPFREDEEIDFEKFK 320
+ + + T FR +D E F
Sbjct: 3 IVAPVITTFR-GGRLDPELFA 22
>3e96_A Dihydrodipicolinate synthase; structural genomics, nysgrc, target
9375C, operon, PSI-2; 1.80A {Bacillus clausii ksm-k16}
Length = 316
Score = 147 bits (374), Expect = 2e-39
Identities = 46/228 (20%), Positives = 90/228 (39%), Gaps = 13/228 (5%)
Query: 526 TRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVT 585
T I+L A AGA+A +I P + +T +Y +F + + P ++Y
Sbjct: 92 TSTAIELGNAAKAAGADAVMIHMPIH--PYVTAGGVYAYFRDIIEALDFPSLVYF----K 145
Query: 586 NIDISVDTLVKLAHHENIRGVKD-TDNIKLAN--MANQTKDLNFSVFAGSAGYLLSGLL- 641
+ +IS LV LA +N+ GVK +++ + + ++ + G+A
Sbjct: 146 DPEISDRVLVDLAPLQNLVGVKYAINDLPRFAKVVRSIPEEHQIAWICGTAEKWAPFFWH 205
Query: 642 VGCAGGINALSAVLGGPICELYDLAKAGKWEEAMKLQHRLVKPDVTVRNVLLMKEMGVPG 701
G G + L +L E+ + + + ++ +V P +R V
Sbjct: 206 AGAKGFTSGLVNLLPQKAVEMLEALRNNDNDAVWRIWEDIV-PFEDLRGKYNQ-GNNVVV 263
Query: 702 VRAAMELYGYYGGRSRRPLPAALKPGGAEKIKQVLTEAGFLVPGVRAA 749
++ AME+ G +R P+ L + + ++L+ L P
Sbjct: 264 IKEAMEMLRQNAGVTRAPV-NELSNEDKQLVTELLSSWKLLQPTKGEG 310
Score = 34.5 bits (80), Expect = 0.12
Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Query: 287 MSLSSST-QLDLTGVFSALPTPFRE-DEEIDFEKFKFNV 323
MSL++ L + TPFR+ D ID+ +K V
Sbjct: 1 MSLANKPLAKALETISGIPITPFRKSDGSIDWHHYKETV 39
>3h5d_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI
biosynthesis, schiff base, cytoplasm, diaminopimelate
biosy lyase; HET: MES; 1.99A {Streptococcus pneumoniae}
Length = 311
Score = 147 bits (373), Expect = 2e-39
Identities = 54/224 (24%), Positives = 106/224 (47%), Gaps = 25/224 (11%)
Query: 526 TRATIDLTQKAAK-AGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFV 584
TR +I+ ++ A+ G A L + PYY K +++ +Y+HF ++AD S +P+IIYN +
Sbjct: 88 TRDSIEFVKEVAEFGGFAAGLAIVPYY--NKPSQEGMYQHFKAIADASDLPIIIYN---I 142
Query: 585 ---TNIDISVDTLVKLAHHENIRGVKD-TDNIKLANMANQTKDLNFSVFAGSAGYLLSGL 640
++++ +T+++LA H NI GVK+ T +A + + F ++ G G +
Sbjct: 143 PGRVVVELTPETMLRLADHPNIIGVKECTSLANMAYLIEHKPE-EFLIYTGEDGDAFHAM 201
Query: 641 LVGCAGGINALSAVLGGPICELYDLAKAGKWEEAMKLQHRLVKPDVTVRNVLLMKEMGV- 699
+G G I+ S G + E++ ++A +Q + + + +
Sbjct: 202 NLGADGVISVASHTNGDEMHEMFTAIAESDMKKAAAIQRKFIP---------KVNALFSY 252
Query: 700 --P-GVRAAMELYGYYGGRSRRPLPAALKPGGAEKIKQVLTEAG 740
P V+A + G+ G +R PL ++I +V+ +
Sbjct: 253 PSPAPVKAILNYMGFEAGPTRLPL-VPAPEEDVKRIIKVVVDGD 295
Score = 38.7 bits (91), Expect = 0.006
Identities = 10/30 (33%), Positives = 14/30 (46%)
Query: 291 SSTQLDLTGVFSALPTPFREDEEIDFEKFK 320
S L + +A TPF ED I+F+
Sbjct: 2 SYQDLKECKIITAFITPFHEDGSINFDAIP 31
>2r8w_A AGR_C_1641P; APC7498, dihydrodipicolinate synthase, agrobacterium
tumefac C58, structural genomics, PSI-2; HET: MSE; 1.80A
{Agrobacterium tumefaciens str}
Length = 332
Score = 147 bits (374), Expect = 2e-39
Identities = 58/226 (25%), Positives = 94/226 (41%), Gaps = 21/226 (9%)
Query: 526 TRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVT 585
T + L + A AGA+A L+ Y +T++ Y HF +VA + +P+ IYNN T
Sbjct: 115 TDEAVALAKDAEAAGADALLLAPVSY--TPLTQEEAYHHFAAVAGATALPLAIYNNPTTT 172
Query: 586 NIDISVDTLVKLAHHENIRGVKDTDNIK------LANMANQTKDLNFSVFAGSAGYLLSG 639
S + LV+LA+ NIR +K LA + + D +F++
Sbjct: 173 RFTFSDELLVRLAYIPNIRAIKMPLPADADYAGELARLRPKLSD-DFAIGYSGDWGCTDA 231
Query: 640 LLVGCAGGINALSAVLGGPICELYDLAKAGKWEEAMKLQHRLVKPDVTVRNVL--LMKEM 697
L G + ++ +L P +L A+AG EEA +L L L KE
Sbjct: 232 TLAGGDTWYSVVAGLLPVPALQLMRAAQAGNAEEAKRLDATFQP--------LWALFKEF 283
Query: 698 G-VPGVRAAMELYGYYGGRSRRPLPAALKPGGAEKIKQVLTEAGFL 742
G + + AA + RP+ L +++++ L L
Sbjct: 284 GSIRVIYAAANILSLTVSEPPRPI-LPLTSAERQRVEEALEALSAL 328
Score = 37.2 bits (87), Expect = 0.017
Identities = 10/44 (22%), Positives = 15/44 (34%), Gaps = 3/44 (6%)
Query: 280 RTLSIQTMSLSSSTQL---DLTGVFSALPTPFREDEEIDFEKFK 320
L Q M + + G+ + TP E +D E F
Sbjct: 15 ENLYFQGMPIKARETDMATRFKGLSAFPITPADEAGRVDIEAFS 58
>1w3i_A EDA, 2-keto-3-deoxy gluconate aldolase; archaeal metabolism,
pyruvate; 1.7A {Sulfolobus solfataricus} SCOP: c.1.10.1
PDB: 1w37_A 1w3n_A* 1w3t_A* 2yda_A*
Length = 293
Score = 145 bits (369), Expect = 4e-39
Identities = 49/226 (21%), Positives = 80/226 (35%), Gaps = 20/226 (8%)
Query: 526 TRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVT 585
I L + + PYY+ + M+E + ++F ++ + SP PV +YN T
Sbjct: 77 LDDAIRLAKLSKDFDIVGIASYAPYYYPR-MSEKHLVKYFKTLCEVSPHPVYLYNYPTAT 135
Query: 586 NIDISVDTLVKLAHHENIRGVKD-TDNI-KLANMANQTKDLNFSVFAGSAGYLLSGLLVG 643
DI ++ GVKD +NI + + V++GS + + G
Sbjct: 136 GKDIDAKVAKEIG---CFTGVKDTIENIIHTLDYKRLNPN--MLVYSGSDMLIATVASTG 190
Query: 644 CAGGINALSAVLGGPICELYDLAKAGKWEEAMKLQHRLVKPDVTVRNVLLMKEMGVPGVR 703
G + A S L + LA K +EA+KLQ + V +
Sbjct: 191 LDGNVAAGSNYLPEVTVTIKKLAMERKIDEALKLQFLHDE----VIEASRIFGSLSSNYV 246
Query: 704 AAMELYGYYGGRSRRPLPAALKPGGAEKIKQV-------LTEAGFL 742
GY G R P+ L ++ + L E L
Sbjct: 247 LTKYFQGYDLGYPRPPI-FPLDDEEERQLIKKVEGIRAKLVELKIL 291
Score = 37.5 bits (88), Expect = 0.010
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 299 GVFSALPTPFREDEEIDFEKFK 320
+ + + TPF +D ID EK K
Sbjct: 2 EIITPIITPFTKDNRIDKEKLK 23
>3na8_A Putative dihydrodipicolinate synthetase; lyase; HET: MSE; 1.85A
{Pseudomonas aeruginosa}
Length = 315
Score = 145 bits (369), Expect = 8e-39
Identities = 52/219 (23%), Positives = 97/219 (44%), Gaps = 18/219 (8%)
Query: 526 TRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVT 585
T T+ Q A GA A ++L Y K+ E +++H+ +V + +PV++YNN +
Sbjct: 105 TAKTVRRAQFAESLGAEAVMVLPISY--WKLNEAEVFQHYRAVGEAIGVPVMLYNNPGTS 162
Query: 586 NIDISVDTLVKLA-HHENIRGVKD-TDNIKLANMANQTKDLNFSVFAGSAGYLLSGLLVG 643
ID+SV+ ++++ +N+ VK+ T +I+ + + + G L + G
Sbjct: 163 GIDMSVELILRIVREVDNVTMVKESTGDIQRMHKLRLLGEGRVPFYNGCNPLALEAFVAG 222
Query: 644 CAGGINALSAVLGGPICELYDLAKAGKWEEAMKLQHRLVKPDVTVRNVLLMKEMGV---P 700
G +A ++ +LY G E+A L +R + L+ + P
Sbjct: 223 AKGWCSAAPNLIPTLNGQLYQAVLDGDLEKARALFYRQLP---------LLDFILRRGLP 273
Query: 701 -GVRAAMELYGYYGGRSRRPLPAALKPGGAEKIKQVLTE 738
++A + L G G R P+ AL G ++ +L E
Sbjct: 274 TTIKAGLGLSGLEVGAPRLPV-QALDTEGCRYLQGLLEE 311
Score = 38.3 bits (90), Expect = 0.007
Identities = 8/51 (15%), Positives = 15/51 (29%)
Query: 273 LCLKVTSRTLSIQTMSLSSSTQLDLTGVFSALPTPFREDEEIDFEKFKFNV 323
+ S + S + G+ TPF D +D ++
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMSASIHGIIGYTITPFAADGGLDLPALGRSI 51
>3a5f_A Dihydrodipicolinate synthase; TIM barrel, enzyme, amino-acid
biosynthesis, cytoplasm, diaminopimelate biosynthesis,
lyase; HET: KPI; 1.19A {Clostridium botulinum A} PDB:
3bi8_A* 3ird_A*
Length = 291
Score = 144 bits (366), Expect = 9e-39
Identities = 59/221 (26%), Positives = 104/221 (47%), Gaps = 15/221 (6%)
Query: 526 TRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFV- 584
T A+I +++ A G + L++ PYY K T+ + +HF +V+D P+IIYN V
Sbjct: 82 TAASIAMSKWAESIGVDGLLVITPYY--NKTTQKGLVKHFKAVSDAVSTPIIIYN---VP 136
Query: 585 --TNIDISVDTLVKLAHHENIRGVKD-TDNIKLANMANQTKDLNFSVFAGSAGYLLSGLL 641
T ++I+ TL +L +NI V + + NI +++G+ ++ L
Sbjct: 137 GRTGLNITPGTLKELCEDKNIVAVXEASGNISQIAQIKALCGDKLDIYSGNDDQIIPILA 196
Query: 642 VGCAGGINALSAVLGGPICELYDLAKAGKWEEAMKLQHRLVKPDVTVRNVLLMKEMGVPG 701
+G G I+ L+ V+ + + +L GK EA+K+Q + + N L ++ +P
Sbjct: 197 LGGIGVISVLANVIPEDVHNMCELYLNGKVNEALKIQLDSLA----LTNALFIETNPIP- 251
Query: 702 VRAAMELYGYYGGRSRRPLPAALKPGGAEKIKQVLTEAGFL 742
V+ AM L G R PL + E +K+ L +
Sbjct: 252 VKTAMNLMNMKVGDLRLPL-CEMNENNLEILKKELKAYNLM 291
Score = 31.9 bits (73), Expect = 0.76
Identities = 8/27 (29%), Positives = 12/27 (44%), Gaps = 1/27 (3%)
Query: 297 LTGVFSALPTPFREDEEIDFEKFKFNV 323
G A+ TPF +DF+K +
Sbjct: 3 FKGSGVAIITPFTNT-GVDFDKLSELI 28
>2pcq_A Putative dihydrodipicolinate synthase; lyase, lysine biosynthesis,
dihydrodipicoliante, S genomics, NPPSFA; 2.10A {Thermus
thermophilus}
Length = 283
Score = 144 bits (365), Expect = 1e-38
Identities = 57/228 (25%), Positives = 101/228 (44%), Gaps = 28/228 (12%)
Query: 526 TRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFV- 584
+A AGA A L P Y+ + L ++ ++A+ +P+ +Y+ V
Sbjct: 74 LPQAEGALLEAKAAGAMALLATPPRYYHGSLGAGL-LRYYEALAEK--MPLFLYH---VP 127
Query: 585 --TNIDISVDTLVKLAHHENIRGVKD-TDNI-KLANMANQTKDLNFSVFAGSAGYLLSGL 640
T +D+ ++ + LA H N+ G+KD + ++ ++A + ++ F V+ G A L L
Sbjct: 128 QNTKVDLPLEAVEALAPHPNVLGIKDSSGDLSRIAFYQARLQE--FRVYTGHAPTFLGAL 185
Query: 641 LVGCAGGINALSAVLGGPICELYDLAKAGKWEEAMKLQHRLVKPDVTVRNVLLMKEM--- 697
+G GGI A + + L D + G+ EA +LQ +L L +
Sbjct: 186 ALGAEGGILAAANLAPRAYRALLDHFREGRLAEAQELQKKLFP---------LGDLLAKG 236
Query: 698 GVPGVRAAMELYGYYGGRSRRPLPAALKPGGAE--KIKQVLTEAGFLV 743
GVP ++ A+ G G R P P A P + + L E G+++
Sbjct: 237 GVPLLKQALRHLGLPAGYPRPPYP-AESPLWERFLPVLEGLKEEGWVL 283
Score = 33.7 bits (78), Expect = 0.17
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 300 VFSALPTPFREDEEIDFEKFK 320
+ +PTPF + +D E F+
Sbjct: 2 ILPPIPTPFDREGRLDEEAFR 22
>3flu_A DHDPS, dihydrodipicolinate synthase; TIM barrel, beta-alpha-barrel,
amino-acid biosynthesis, diaminopimelate biosynthesis;
2.00A {Neisseria meningitidis serogroup B}
Length = 297
Score = 144 bits (366), Expect = 1e-38
Identities = 65/225 (28%), Positives = 98/225 (43%), Gaps = 23/225 (10%)
Query: 526 TRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFV- 584
T I L+Q A KAGA+ L + PYY K +++ IY+HF ++A+ + IP+IIYN V
Sbjct: 88 TVEAIALSQAAEKAGADYTLSVVPYY--NKPSQEGIYQHFKTIAEATSIPMIIYN---VP 142
Query: 585 --TNIDISVDTLVKLAHHENIRGVKD-TDNIKLANMANQTKDLNFSVFAGSAGYLLSGLL 641
T + ++ DT+++LA NI GVK+ + NI F V +G L +L
Sbjct: 143 GRTVVSMTNDTILRLAEIPNIVGVKEASGNIGSNIELINRAPEGFVVLSGDDHTALPFML 202
Query: 642 VGCAGGINALSAVLGGPICELYDLAKAGKWEEAMKLQHRLVKPDVTVRNVLLMKEMGV-- 699
G G I + ++ A G A +L RL+ + M
Sbjct: 203 CGGHGVITVAANAAPKLFADMCRAALQGDIALARELNDRLIP---------IYDTMFCEP 253
Query: 700 -P-GVRAAMELYGYYGGRSRRPLPAALKPGGAEKIKQVLTEAGFL 742
P + A+ G R PL L G K++ L +G L
Sbjct: 254 SPAAPKWAVSALGRCEPHVRLPL-VPLTENGQAKVRAALKASGQL 297
Score = 36.3 bits (85), Expect = 0.027
Identities = 10/40 (25%), Positives = 17/40 (42%), Gaps = 7/40 (17%)
Query: 284 IQTMSLSSSTQLDLTGVFSALPTPFREDEEIDFEKFKFNV 323
I ++ L G AL TP +D I +E+ + +
Sbjct: 2 IDPFTM-------LQGSLVALITPMNQDGSIHYEQLRDLI 34
>1xky_A Dihydrodipicolinate synthase; TIM barrel, , lysine
biosynthesis;spine, lyase; 1.94A {Bacillus anthracis}
SCOP: c.1.10.1 PDB: 1xl9_A 3hij_A*
Length = 301
Score = 144 bits (365), Expect = 2e-38
Identities = 67/224 (29%), Positives = 124/224 (55%), Gaps = 25/224 (11%)
Query: 526 TRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFV- 584
T A+IDLT+KA + G +A +++ PYY K +++ +Y+HF ++A+++P+PV++YN V
Sbjct: 93 THASIDLTKKATEVGVDAVMLVAPYY--NKPSQEGMYQHFKAIAESTPLPVMLYN---VP 147
Query: 585 --TNIDISVDTLVKLAHHENIRGVKD-TDNI-KLANMANQTKDLNFSVFAGSAGYLLSGL 640
+ + ISVDT+V+L+ ENI +KD ++ + + +T D +F+V++G G L +
Sbjct: 148 GRSIVQISVDTVVRLSEIENIVAIKDAGGDVLTMTEIIEKTAD-DFAVYSGDDGLTLPAM 206
Query: 641 LVGCAGGINALSAVLGGPICELYDLAKAGKWEEAMKLQHRLVKPDVTVRNVLLMKEMGV- 699
VG G ++ S V+G + E+ +AG++++A KL LV+ + + +
Sbjct: 207 AVGAKGIVSVASHVIGNEMQEMIAAFQAGEFKKAQKLHQLLVR---------VTDSLFMA 257
Query: 700 --P-GVRAAMELYGYYGGRSRRPLPAALKPGGAEKIKQVLTEAG 740
P V+ A+++ G G R PL L ++ V+
Sbjct: 258 PSPTPVKTALQMVGLDVGSVRLPL-LPLTEEERVTLQSVMQSIP 300
Score = 36.0 bits (84), Expect = 0.036
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 296 DLTGVFSALPTPFREDEEIDFEKFK 320
D + +A+ TPF + IDF K
Sbjct: 12 DFGTIATAMVTPFDINGNIDFAKTT 36
>2yxg_A DHDPS, dihydrodipicolinate synthase; MJ0244, TIM beta/alpha-barrel
fold, structural genomics, NPPSFA; 2.20A
{Methanocaldococcus jannaschii DSM2661}
Length = 289
Score = 143 bits (364), Expect = 2e-38
Identities = 59/226 (26%), Positives = 110/226 (48%), Gaps = 26/226 (11%)
Query: 526 TRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFV- 584
T I+L+ A GA+A L + PYY K T++ + +HF VA++ +P+++YN V
Sbjct: 81 TEEAIELSVFAEDVGADAVLSITPYY--NKPTQEGLRKHFGKVAESINLPIVLYN---VP 135
Query: 585 --TNIDISVDTLVKLAH-HENIRGVKD-TDNIKLANMANQTKDLNFSVFAGSAGYLLSGL 640
T +++ T+ LA + NI VK+ N L+ ++ D +V +G+ L +
Sbjct: 136 SRTAVNLEPKTVKLLAEEYSNISAVKEANPN--LSQVSELIHDAKITVLSGNDELTLPII 193
Query: 641 LVGCAGGINALSAVLGGPICELYDLAKAGKWEEAMKLQHRLVKPDVTVRNVLLMKEMGV- 699
+G G I+ ++ ++ E+ + A G +E+A ++ ++L LMK M +
Sbjct: 194 ALGGKGVISVVANIVPKEFVEMVNYALEGDFEKAREIHYKLFP---------LMKAMFIE 244
Query: 700 --P-GVRAAMELYGYYGGRSRRPLPAALKPGGAEKIKQVLTEAGFL 742
P V+ A+ + G G R PL + + ++ VL + G +
Sbjct: 245 TNPIPVKTALNMMGRPAGELRLPL-CEMSEEHKKILENVLKDLGLI 289
Score = 30.9 bits (71), Expect = 1.4
Identities = 10/27 (37%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
Query: 297 LTGVFSALPTPFREDEEIDFEKFKFNV 323
GV+ A+ TPF+ ++E+DF+ + N+
Sbjct: 2 FKGVYPAIITPFK-NKEVDFDGLEENI 27
>2rfg_A Dihydrodipicolinate synthase; beta barrel, amino-acid biosynthesis,
diaminopimelate biosyn lyase, lysine biosynthesis,
schiff base; 1.50A {Hahella chejuensis}
Length = 297
Score = 143 bits (364), Expect = 2e-38
Identities = 52/225 (23%), Positives = 91/225 (40%), Gaps = 23/225 (10%)
Query: 526 TRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFV- 584
+ Q A +AGA+A L + YY + +++ +Y+HF V D IP+I+YN +
Sbjct: 81 PVEAVRYAQHAQQAGADAVLCVAGYY--NRPSQEGLYQHFKMVHDAIDIPIIVYN---IP 135
Query: 585 --TNIDISVDTLVKLAHHENIRGVKD-TDNIKLANMANQTKDLNFSVFAGSAGYLLSGLL 641
+DI +T+ +LA I GVKD T ++ + + FS +G ++
Sbjct: 136 PRAVVDIKPETMARLAALPRIVGVKDATTDLARISRERMLINKPFSFLSGDDMTAIAYNA 195
Query: 642 VGCAGGINALSAVLGGPICELYDLAKAGKWEEAMKLQHRLVKPDVTVRNVLLMKEMGV-- 699
G G I+ + + ++ G + EA+++ L L + +
Sbjct: 196 SGGQGCISVSANIAPALYGQMQTATLQGDFREALRIHDLLAP---------LHEALFREP 246
Query: 700 -PG-VRAAMELYGYYGGRSRRPLPAALKPGGAEKIKQVLTEAGFL 742
P + A L G R P+ L IK ++ E L
Sbjct: 247 SPAGAKYAASLLGLCNEECRLPI-VPLSEQTKSDIKNIINELYRL 290
Score = 31.3 bits (72), Expect = 1.1
Identities = 7/27 (25%), Positives = 12/27 (44%), Gaps = 1/27 (3%)
Query: 297 LTGVFSALPTPFREDEEIDFEKFKFNV 323
G A+ TPF + ++D + V
Sbjct: 2 FRGSLIAMITPFI-NGQVDEKALAGLV 27
>3tak_A DHDPS, dihydrodipicolinate synthase; TIM barrel, lysine
biosynthesis, pyruvate, lyase; 1.42A {Acinetobacter
baumannii} PDB: 3pud_A* 3pue_A* 3pul_A 3rk8_A 3tce_A*
3tdf_A 3u8g_A 3uqn_A 4dxv_A
Length = 291
Score = 143 bits (363), Expect = 3e-38
Identities = 62/226 (27%), Positives = 110/226 (48%), Gaps = 25/226 (11%)
Query: 526 TRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFV- 584
TR I+LT+ A GA+AAL++ PYY K T++ +Y+H+ ++A+ +P+I+YN V
Sbjct: 82 TREAIELTKAAKDLGADAALLVTPYY--NKPTQEGLYQHYKAIAEAVELPLILYN---VP 136
Query: 585 --TNIDISVDTLVKLAHHENIRGVKD-TDNI-KLANMANQTKDLNFSVFAGSAGYLLSGL 640
T +D+S DT V+LA NI G+KD T ++ + + + +V++G +
Sbjct: 137 GRTGVDLSNDTAVRLAEIPNIVGIKDATGDVPRGKALIDALNG-KMAVYSGDDETAWELM 195
Query: 641 LVGCAGGINALSAVLGGPICELYDLAKAGKWEEAMKLQHRLVKPDVTVRNVLLMKEMGV- 699
L+G G I+ + + + E+ +A A ++A L +++ L +
Sbjct: 196 LLGADGNISVTANIAPKAMSEVCAVAIAKDEQQAKTLNNKIAN---------LHNILFCE 246
Query: 700 --P-GVRAAMELYGYYGGRSRRPLPAALKPGGAEKIKQVLTEAGFL 742
P V+ A+ G R PL L E ++ L +AG +
Sbjct: 247 SNPIPVKWALHEMGLIDTGIRLPL-TPLAEQYREPLRNALKDAGII 291
Score = 36.7 bits (86), Expect = 0.024
Identities = 7/27 (25%), Positives = 14/27 (51%)
Query: 297 LTGVFSALPTPFREDEEIDFEKFKFNV 323
+ G A+ TP +D +D++ + V
Sbjct: 2 IQGSIVAIVTPMLKDGGVDWKSLEKLV 28
>2ehh_A DHDPS, dihydrodipicolinate synthase; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; 1.90A {Aquifex aeolicus}
Length = 294
Score = 143 bits (363), Expect = 3e-38
Identities = 68/227 (29%), Positives = 107/227 (47%), Gaps = 24/227 (10%)
Query: 526 TRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFV- 584
T + LT A + GA+ AL++ PYY K T+ +YEHF +VA IP+IIYN +
Sbjct: 81 THEAVHLTAHAKEVGADGALVVVPYY--NKPTQRGLYEHFKTVAQEVDIPIIIYN---IP 135
Query: 585 --TNIDISVDTLVKLA-HHENIRGVKD-TDNIKLANMANQTKDLNFSVFAGSAGYLLSGL 640
T ++ISVDT+ KLA ENI K+ T N+ + + +FSV +G L +
Sbjct: 136 SRTCVEISVDTMFKLASECENIVASKESTPNMDRISEIVKRLGESFSVLSGDDSLTLPMM 195
Query: 641 LVGCAGGINALSAVLGGPICELYDLAKAGKWEEAMKLQHRLVKPDVTVRNVLLMKEMGV- 699
+G G I+ + V+ + EL A G + A ++ + L L K + +
Sbjct: 196 ALGAKGVISVANNVMPREVKELIRAALEGDFRRAREIHYYLHD---------LFKVLFIE 246
Query: 700 --P-GVRAAMELYGYYGGRSRRPLPAALKPGGAEKIKQVLTEAGFLV 743
P V+ A + G R PL + P K+++VL + +
Sbjct: 247 TNPIPVKTACWMLGMCEKEFRLPL-TEMSPENENKLREVLKKYNLPL 292
Score = 30.9 bits (71), Expect = 1.6
Identities = 9/27 (33%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Query: 297 LTGVFSALPTPFREDEEIDFEKFKFNV 323
G AL TPF+ + E+D+E +
Sbjct: 2 FQGSIVALITPFK-EGEVDYEALGNLI 27
>2ojp_A DHDPS, dihydrodipicolinate synthase; dimer, lysine biosynthe lyase;
HET: KGC GOL; 1.70A {Escherichia coli} PDB: 1yxc_A
1dhp_A 1yxd_A* 2ats_A* 3du0_A* 3c0j_A* 3ubs_A* 4eou_A*
3i7q_A* 3i7r_A* 3i7s_A* 2pur_A* 1s5v_A 1s5w_A 1s5t_A
3den_A* 2a6l_A 2a6n_A 3g0s_A
Length = 292
Score = 143 bits (362), Expect = 3e-38
Identities = 58/226 (25%), Positives = 103/226 (45%), Gaps = 24/226 (10%)
Query: 526 TRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFV- 584
T I LTQ+ +G L + PYY + +++ +Y+HF ++A+++ +P I+YN V
Sbjct: 82 TAEAISLTQRFNDSGIVGCLTVTPYY--NRPSQEGLYQHFKAIAEHTDLPQILYN---VP 136
Query: 585 --TNIDISVDTLVKLAHHENIRGVKD-TDNIKLANMANQTKDLNFSVFAGSAGYLLSGLL 641
T D+ +T+ +LA +NI G+ + T N+ N + +F + +G L +
Sbjct: 137 SRTGCDLLPETVGRLAKVKNIIGIXEATGNLTRVNQIKELVSDDFVLLSGDDASALDFMQ 196
Query: 642 VGCAGGINALSAVLGGPICELYDLAKAGKWEEAMKLQHRLVKPDVTVRNVLLMKEMGV-- 699
G G I+ + V + ++ LA G + EA + RL+ L ++ V
Sbjct: 197 YGGHGVISVTANVAARDMAQMCKLAAEGHFAEARVINERLMP---------LHNKLFVEP 247
Query: 700 -P-GVRAAMELYGYYG-GRSRRPLPAALKPGGAEKIKQVLTEAGFL 742
P V+ A + G R P+ + G E ++ L AG L
Sbjct: 248 NPIPVKWACKELGLVATDTLRLPM-TPITDSGRETVRAALKHAGLL 292
Score = 36.5 bits (85), Expect = 0.025
Identities = 7/27 (25%), Positives = 10/27 (37%)
Query: 297 LTGVFSALPTPFREDEEIDFEKFKFNV 323
TG A+ TP E + K +
Sbjct: 2 FTGSIVAIVTPMDEKGNVCRASLKKLI 28
>3qze_A DHDPS, dihydrodipicolinate synthase; alpha beta barrel,
cytoplasmic; 1.59A {Pseudomonas aeruginosa} PDB: 3puo_A*
3noe_A 3ps7_A* 3s8h_A
Length = 314
Score = 142 bits (360), Expect = 1e-37
Identities = 62/226 (27%), Positives = 107/226 (47%), Gaps = 25/226 (11%)
Query: 526 TRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFV- 584
TR + LT+ A GA+A L++ PYY K T++ +Y+HF +A+ IP I+YN V
Sbjct: 104 TREAVALTEAAKSGGADACLLVTPYY--NKPTQEGMYQHFRHIAEAVAIPQILYN---VP 158
Query: 585 --TNIDISVDTLVKLAHHENIRGVKD-TDNIK-LANMANQTKDLNFSVFAGSAGYLLSGL 640
T+ D+ +T+ +L+ NI G+K+ T +++ + + +F V++G + +
Sbjct: 159 GRTSCDMLPETVERLSKVPNIIGIKEATGDLQRAKEVIERVGK-DFLVYSGDDATAVELM 217
Query: 641 LVGCAGGINALSAVLGGPICELYDLAKAGKWEEAMKLQHRLVKPDVTVRNVLLMKEMGV- 699
L+G G I+ + V + +L A G A + RL+ L K + +
Sbjct: 218 LLGGKGNISVTANVAPRAMSDLCAAAMRGDAAAARAINDRLMP---------LHKALFIE 268
Query: 700 --P-GVRAAMELYGYYGGRSRRPLPAALKPGGAEKIKQVLTEAGFL 742
P V+ A+ G R PL L P E ++Q + + G L
Sbjct: 269 SNPIPVKWALHEMGLIPEGIRLPL-TWLSPRCHEPLRQAMRQTGVL 313
Score = 35.6 bits (83), Expect = 0.052
Identities = 8/27 (29%), Positives = 12/27 (44%)
Query: 297 LTGVFSALPTPFREDEEIDFEKFKFNV 323
+ G AL TPF +D++ V
Sbjct: 24 IAGSMVALVTPFDAQGRLDWDSLAKLV 50
>3d0c_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM
barrel, NYSGXRC, PSI-2, structural genomics; 1.90A
{Oceanobacillus iheyensis HTE831}
Length = 314
Score = 141 bits (357), Expect = 3e-37
Identities = 47/223 (21%), Positives = 87/223 (39%), Gaps = 17/223 (7%)
Query: 526 TRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVT 585
I+L + A +GA+ +I P + +T+ E++ ++ + P IIY
Sbjct: 92 VDTAIELGKSAIDSGADCVMIHQPVH--PYITDAGAVEYYRNIIEALDAPSIIY------ 143
Query: 586 NID--ISVDTLVKLAHHENIRGVKD-TDNIKLAN--MANQTKDLNFSVFAGSAGYLLSGL 640
D +S D + +LA + + G+K ++I+ M K N + G+A
Sbjct: 144 FKDAHLSDDVIKELAPLDKLVGIKYAINDIQRVTQVMRAVPKSSNVAFICGTAEKWAPFF 203
Query: 641 L-VGCAGGINALSAVLGGPICELYDLAKAGKWEEAMKLQHRLVKPDVTVRNVLLMKEMGV 699
G G + L V L + + G E+ + +V P +R V
Sbjct: 204 YHAGAVGFTSGLVNVFPQKSFALLEALEEGNQEKIWDVWEDVV-PFEDLRAKHNN-GNNV 261
Query: 700 PGVRAAMELYGYYGGRSRRPLPAALKPGGAEKIKQVLTEAGFL 742
++ AME G G +R P+ L P +++++L
Sbjct: 262 VIIKEAMEQLGLRAGVTREPV-NPLSPNDRLELEELLKSWNTQ 303
>2vc6_A MOSA, dihydrodipicolinate synthase; DHDPS, TIM barrel, schiff base,
lyase; HET: MCL; 1.95A {Sinorhizobium meliloti}
Length = 292
Score = 140 bits (355), Expect = 3e-37
Identities = 63/227 (27%), Positives = 104/227 (45%), Gaps = 24/227 (10%)
Query: 526 TRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFV- 584
T I + A AGA+ LI+ PYY K T++ IY+HF ++ S IP+I+YN +
Sbjct: 81 TAEAIAFVRHAQNAGADGVLIVSPYY--NKPTQEGIYQHFKAIDAASTIPIIVYN---IP 135
Query: 585 --TNIDISVDTLVKLA-HHENIRGVKD-TDNIKLANMANQTKDLNFSVFAGSAGYLLSGL 640
+ I+I V+TL ++ N++GV D T N+ ++ +F++ G G L +
Sbjct: 136 GRSAIEIHVETLARIFEDCPNVKGVXDATGNLLRPSLERMACGEDFNLLTGEDGTALGYM 195
Query: 641 LVGCAGGINALSAVLGGPICELYDLAKAGKWEEAMKLQHRLVKPDVTVRNVLLMKEMGV- 699
G G I+ + V + G + A+KLQ RL+ L + + +
Sbjct: 196 AHGGHGCISVTANVAPALCADFQQACLNGDFAAALKLQDRLMP---------LHRALFLE 246
Query: 700 --PG-VRAAMELYGYYGGRSRRPLPAALKPGGAEKIKQVLTEAGFLV 743
P + A++ G G R PL + P E+I + AG L+
Sbjct: 247 TNPAGAKYALQRLGRMRGDLRLPL-VTISPSFQEEIDDAMRHAGILL 292
Score = 31.1 bits (71), Expect = 1.2
Identities = 10/27 (37%), Positives = 12/27 (44%), Gaps = 1/27 (3%)
Query: 297 LTGVFSALPTPFREDEEIDFEKFKFNV 323
G +AL TPF D+ ID V
Sbjct: 2 FEGSITALVTPFA-DDRIDEVALHDLV 27
>3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A
C-terminal alpha-helical segment, amino-acid
biosynthesis, cytoplasm; HET: MCL; 2.20A
{Corynebacterium glutamicum}
Length = 304
Score = 140 bits (355), Expect = 3e-37
Identities = 52/220 (23%), Positives = 98/220 (44%), Gaps = 15/220 (6%)
Query: 526 TRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFV- 584
TR +++L + AA AGA+ L++ PYY K +++ + HF ++A + +P+ +Y+ +
Sbjct: 97 TRTSVELAEAAASAGADGLLVVTPYY--SKPSQEGLLAHFGAIAAATEVPICLYD---IP 151
Query: 585 --TNIDISVDTLVKLAHHENIRGVKDTDNIKLANMANQTKDLNFSVFAGSAGYLLSGLLV 642
+ I I DT+ +L+ I V D L + K+ + ++G L L +
Sbjct: 152 GRSGIPIESDTMRRLSELPTILAVXDAKG-DLVAATSLIKETGLAWYSGDDPLNLVWLAL 210
Query: 643 GCAGGINALSAVLGGPICELYDLAKAGKWEEAMKLQHRLVKPDVTVRNVLLMKEMGVPGV 702
G +G I+ + + ELY + G A ++ +L +
Sbjct: 211 GGSGFISVIGHAAPTALRELYTSFEEGDLVRAREINAKLSP----LVAAQGRLGGVSL-A 265
Query: 703 RAAMELYGYYGGRSRRPLPAALKPGGAEKIKQVLTEAGFL 742
+AA+ L G G R P+ A E +++ + +AG L
Sbjct: 266 KAALRLQGINVGDPRLPI-MAPNEQELEALREDMKKAGVL 304
Score = 34.3 bits (79), Expect = 0.13
Identities = 8/40 (20%), Positives = 17/40 (42%), Gaps = 1/40 (2%)
Query: 281 TLSIQTMSLSSSTQLDLTGVFSALPTPFREDEEIDFEKFK 320
++ ++ + + V A+ TPF E +ID +
Sbjct: 2 AITSTGLTAKTGVEH-FGTVGVAMVTPFTESGDIDIAAGR 40
>3l21_A DHDPS, dihydrodipicolinate synthase; DAPA, dimer, RV2753C, lysine
biosynthesis, amino-acid biosynthesis, diaminopimelate
biosynthesis; HET: KPI CME; 2.10A {Mycobacterium
tuberculosis} PDB: 1xxx_A
Length = 304
Score = 140 bits (355), Expect = 4e-37
Identities = 55/220 (25%), Positives = 93/220 (42%), Gaps = 15/220 (6%)
Query: 526 TRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFV- 584
T +I L + A GA+ L++ PYY K + + HF +VAD + +P+++Y+ +
Sbjct: 96 TAHSIRLAKACAAEGAHGLLVVTPYY--SKPPQRGLQAHFTAVADATELPMLLYD---IP 150
Query: 585 --TNIDISVDTLVKLAHHENIRGVKDTDNIKLANMANQTKDLNFSVFAGSAGYLLSGLLV 642
+ + I DT+ LA H NI GV D L + A D + ++G L L +
Sbjct: 151 GRSAVPIEPDTIRALASHPNIVGVXDAKA-DLHSGAQIMADTGLAYYSGDDALNLPWLRM 209
Query: 643 GCAGGINALSAVLGGPICELYDLAKAGKWEEAMKLQHRLVKPDVTVRNVLLMKEMGVPGV 702
G G I+ ++ + G + EL +G A K+ + + N +
Sbjct: 210 GATGFISVIAHLAAGQLRELLSAFGSGDIATARKINIAVAP----LCNAMSRLGGVTL-S 264
Query: 703 RAAMELYGYYGGRSRRPLPAALKPGGAEKIKQVLTEAGFL 742
+A + L G G R P A P + + + A L
Sbjct: 265 KAGLRLQGIDVGDPRLPQ-VAATPEQIDALAADMRAASVL 303
Score = 37.0 bits (86), Expect = 0.017
Identities = 8/40 (20%), Positives = 18/40 (45%), Gaps = 2/40 (5%)
Query: 281 TLSIQTMSLSSSTQLDLTGVFSALPTPFREDEEIDFEKFK 320
+++ T+ + +L + +A+ TPF D +D
Sbjct: 2 AMAVTTVGFDVAARL--GTLLTAMVTPFSGDGSLDTATAA 39
>3dz1_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM
barrel, NYSGXRC, PSI2, structural genomics; 1.87A
{Rhodopseudomonas palustris}
Length = 313
Score = 138 bits (350), Expect = 2e-36
Identities = 32/237 (13%), Positives = 76/237 (32%), Gaps = 29/237 (12%)
Query: 523 HTTTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVAD--NSPIPVIIYN 580
A L + + AGA +I P T++ I +F + +P ++ +
Sbjct: 85 APGFAAMRRLARLSMDAGAAGVMIAPPPS---LRTDEQITTYFRQATEAIGDDVPWVLQD 141
Query: 581 NTFVTNIDISVDTLVKLAH-HENIRGVK--DTDNI----KLANMANQTKDLNFSVFAGSA 633
++ ++ + ++ + +K D + L S+ G+
Sbjct: 142 YPLTLSVVMTPKVIRQIVMDSASCVMLKHEDWPGLEKITTLRGFQKDGSLRPLSILCGNG 201
Query: 634 GYLLSGLLVGCAGGINALSAVLGGPICELYDLAKAGKWEEAMKLQHRLVKPDVTVRNVLL 693
G L + + ++ L+KAG+ + A L + L
Sbjct: 202 GLFLDFEMER-GADGAMTGYCFPDMLVDVVKLSKAGQRDLAHNLFDAHLP---------L 251
Query: 694 MKEM-----GVPGVRAAMELYGYYG-GRSRRPLPAALKPGGAEKIKQVLTEAGFLVP 744
++ G+ + ++ G R+P +L E++ +L+ +
Sbjct: 252 IRYEHQQGVGLSVRKYVLKKRGLLSSSAQRKPGA-SLTDTAREEVDYLLSRLARVEG 307
Score = 44.1 bits (105), Expect = 9e-05
Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
Query: 287 MSLSSSTQLDLTGVFSALPTPFREDEEIDFEKFK 320
MSL + + G F+ PTPF +D +ID
Sbjct: 1 MSLKLTPEA--AGTFAIAPTPFHDDGKIDDVSID 32
>1o5k_A DHDPS, dihydrodipicolinate synthase; TM1521, structural genomics, J
protein structure initiative, joint center for
structural G lyase; HET: MCL; 1.80A {Thermotoga
maritima} SCOP: c.1.10.1 PDB: 3pb2_A 3pb0_A
Length = 306
Score = 137 bits (348), Expect = 3e-36
Identities = 56/225 (24%), Positives = 108/225 (48%), Gaps = 19/225 (8%)
Query: 526 TRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFV- 584
T T+ L ++A K GAN L++ PYY K T++ +Y+H+ +++ + + +++YN V
Sbjct: 93 TEKTLKLVKQAEKLGANGVLVVTPYY--NKPTQEGLYQHYKYISERTDLGIVVYN---VP 147
Query: 585 --TNIDISVDTLVKL-AHHENIRGVKDT----DNIKLANMANQTKDLNFSVFAGSAGYLL 637
T +++ +T ++ A +N+ G+ + D I + +F V++G+
Sbjct: 148 GRTGVNVLPETAARIAADLKNVVGIXEANPDIDQIDRTVSLTKQARSDFMVWSGNDDRTF 207
Query: 638 SGLLVGCAGGINALSAVLGGPICELYDLAKAGKWEEAMKLQHRLVKPDVTVRNVLLMKEM 697
L G G I+ +S V + EL +G E++ ++ +L + L ++
Sbjct: 208 YLLCAGGDGVISVVSNVAPKQMVELCAEYFSGNLEKSREVHRKLRP----LMKALFVETN 263
Query: 698 GVPGVRAAMELYGYYGGRSRRPLPAALKPGGAEKIKQVLTEAGFL 742
+P V+AA+ L G+ R PL E ++ VL E+G L
Sbjct: 264 PIP-VKAALNLMGFIENELRLPL-VPASEKTVELLRNVLKESGLL 306
Score = 30.8 bits (70), Expect = 1.7
Identities = 9/24 (37%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Query: 297 LTGVFSALPTPFREDEEIDFEKFK 320
GV +A+ TPF ++ E+D E ++
Sbjct: 14 FRGVGTAIVTPF-KNGELDLESYE 36
>3si9_A DHDPS, dihydrodipicolinate synthase; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, TIM barrel; 2.10A {Bartonella henselae}
Length = 315
Score = 138 bits (349), Expect = 3e-36
Identities = 63/226 (27%), Positives = 101/226 (44%), Gaps = 24/226 (10%)
Query: 526 TRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFV- 584
T ++L + A KAGA+A L++ PYY + + +Y HF S+A IP+IIYN +
Sbjct: 103 TSEAVELAKHAEKAGADAVLVVTPYY--NRPNQRGLYTHFSSIAKAISIPIIIYN---IP 157
Query: 585 --TNIDISVDTLVKLA-HHENIRGVKD-TDNIKLANMANQTKDLNFSVFAGSAGYLLSGL 640
+ ID++V+T+ L +NI GVKD T I+ A+ + +F +G L
Sbjct: 158 SRSVIDMAVETMRDLCRDFKNIIGVKDATGKIERASEQREKCGKDFVQLSGDDCTALGFN 217
Query: 641 LVGCAGGINALSAVLGGPICELYDLAKAGKWEEAMKLQHRLVKPDVTVRNVLLMKEMGV- 699
G G I+ S V +L+ ++ A+KL L+ L + + +
Sbjct: 218 AHGGVGCISVSSNVAPKLCAQLHAACLCSDYKTALKLNDLLMP---------LNRAVFIE 268
Query: 700 --PG-VRAAMELYGYYGGRSRRPLPAALKPGGAEKIKQVLTEAGFL 742
P ++ A G G R P+ L + I + L AG L
Sbjct: 269 PSPAGIKYAAAKLGLCGTIVRSPI-VPLSDTTKKIIDEALYHAGLL 313
Score = 36.4 bits (85), Expect = 0.028
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 297 LTGVFSALPTPFREDEEIDFEKFKFNV 323
L G +AL TPF ++ ID + F V
Sbjct: 23 LKGAVTALITPFDDNGAIDEKAFCNFV 49
>3m5v_A DHDPS, dihydrodipicolinate synthase; TIM barrel, csgid, amino-acid
biosynthesis, diaminopimelate biosynthesis, lyase,
lysine biosynthesis; HET: MSE; 1.80A {Campylobacter
jejuni} PDB: 3ler_A*
Length = 301
Score = 137 bits (347), Expect = 5e-36
Identities = 63/228 (27%), Positives = 99/228 (43%), Gaps = 28/228 (12%)
Query: 526 TRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFV- 584
T + L + A + GA+ L + PYY K T+ +YEH+ ++A + IPV++YN V
Sbjct: 89 THEAVGLAKFAKEHGADGILSVAPYY--NKPTQQGLYEHYKAIAQSVDIPVLLYN---VP 143
Query: 585 --TNIDISVDTLVKLA-HHENIRGVKD-TDNI-KLANMANQTKDLNFSVFAGSAGYLLSG 639
T +IS DT++KL ENI GVK+ + NI K ++ + +G
Sbjct: 144 GRTGCEISTDTIIKLFRDCENIYGVKEASGNIDKCVDLLAHEPR--MMLISGEDAINYPI 201
Query: 640 LLVGCAGGINALSAVLGGPICELYDLAKAGKWEEAMKLQHRLVKPDVTVRNVLLMKEMGV 699
L G G I+ S +L I L A ++EA K+ L + K +
Sbjct: 202 LSNGGKGVISVTSNLLPDMISALTHFALDENYKEAKKINDELYN---------INKILFC 252
Query: 700 ---P-GVRAAMELYGYYG-GRSRRPLPAALKPGGAEKIKQVLTEAGFL 742
P ++ AM L G R PL + KI++V+ +
Sbjct: 253 ESNPIPIKTAMYLAGLIESLEFRLPL-CSPSKENFAKIEEVMKKYKIK 299
Score = 31.7 bits (73), Expect = 0.95
Identities = 7/27 (25%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Query: 297 LTGVFSALPTPFREDEEIDFEKFKFNV 323
+ G +AL TPF+ + ++D + + +
Sbjct: 9 IIGAMTALITPFK-NGKVDEQSYARLI 34
>3daq_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI
biosynthesis, diaminopimelate biosynthesis, lyase,
schiff B; 1.45A {Staphylococcus aureus} PDB: 3di1_A
3di0_A
Length = 292
Score = 135 bits (342), Expect = 2e-35
Identities = 49/223 (21%), Positives = 100/223 (44%), Gaps = 26/223 (11%)
Query: 526 TRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFV- 584
T +I + +A GA+A +++ PYY K + + +HF ++AD +PV++YN V
Sbjct: 83 TEKSIQASIQAKALGADAIMLITPYY--NKTNQRGLVKHFEAIADAVKLPVVLYN---VP 137
Query: 585 --TNIDISVDTLVKLAHHENIRGVKD-TDNI-KLANMANQTKDLNFSVFAGSAGYLLSGL 640
TN+ I +T+ L+ H I +KD T++ L + + +F++++G+ ++
Sbjct: 138 SRTNMTIEPETVEILSQHPYIVALKDATNDFEYLEEVKKRIDTNSFALYSGNDDNVVEYY 197
Query: 641 LVGCAGGINALSAVLGGPICELYDLAKAGKWEEAMKLQHRLVKPDVTVRNVLLMKEMGV- 699
G G I+ ++ V+ LYD ++G + + L+ + V
Sbjct: 198 QRGGQGVISVIANVIPKEFQALYDAQQSGL--DIQDQFKPIGT---------LLSALSVD 246
Query: 700 --P-GVRAAMELYGYYGGRSRRPLPAALKPGGAEKIKQVLTEA 739
P ++A G+ R PL +L+ + +++
Sbjct: 247 INPIPIKALTSYLGFGNYELRLPL-VSLEDTDTKVLREAYDTF 288
Score = 30.9 bits (71), Expect = 1.4
Identities = 10/27 (37%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Query: 297 LTGVFSALPTPFREDEEIDFEKFKFNV 323
GV AL TPF + +++ E K +V
Sbjct: 4 FEGVGVALTTPFT-NNKVNLEALKAHV 29
>3fkr_A L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL family, complex,
pyruvate, lyase; HET: KPI; 1.80A {Azospirillum
brasilense} PDB: 3fkk_A
Length = 309
Score = 130 bits (328), Expect = 2e-33
Identities = 36/226 (15%), Positives = 71/226 (31%), Gaps = 12/226 (5%)
Query: 523 HTTTRATIDLTQKAAKAGANAALILCPYYFQKKM-TEDLIYEHFISVADNSPIPVIIYNN 581
H +T+ + +A + GA + + PY+ E I+E + V+D IP+++ +
Sbjct: 86 HYSTQVCAARSLRAQQLGAAMVMAMPPYHGATFRVPEAQIFEFYARVSDAIAIPIMVQDA 145
Query: 582 TFVTNIDISVDTLVKLAHHENIRGV--KDTDNI-KLANMANQTKDLNFSVFAGSAGYLLS 638
+ E + + KL + D + G L
Sbjct: 146 PASGTALSAPFLARMAREIEQVAYFXIETPGAANKLRELIRLGGDAIEGPWDGEEAITLL 205
Query: 639 GLLVGCAGGINALSAVLGGPICELYDLAKAGKWEEAMKLQHRLVKPDVTVRNVLLMKEMG 698
L I + + + G+ ++A + ++ G
Sbjct: 206 ADLHA-GATGAMTGGGFPDGIRPILEAWREGRHDDAYARYQAWLP-----LINHENRQSG 259
Query: 699 VPGVRAAMELYGYYGG-RSRRPLPAALKPGGAEKIKQVLTEAGFLV 743
+ +A M G R R P+P L P ++ + LV
Sbjct: 260 ILTAKALMREGGVIASERPRHPMP-ELHPDTRAELLAIARRLDPLV 304
Score = 43.2 bits (102), Expect = 2e-04
Identities = 9/31 (29%), Positives = 16/31 (51%)
Query: 290 SSSTQLDLTGVFSALPTPFREDEEIDFEKFK 320
+SS+ G+F +PT F + ++D K
Sbjct: 2 TSSSTPRHRGIFPVVPTTFADTGDLDLASQK 32
>2wkj_A N-acetylneuraminate lyase; directed evolution, sialic acid
mimetics, aldolase, S base, carbohydrate metabolism,
N-acetylneuraminic acid LYAS; HET: KPI PYR; 1.45A
{Escherichia coli} PDB: 2wnq_A 2xfw_A* 2wpb_A* 2wnz_A*
2ygy_A* 2wo5_A* 2wnn_A* 3lbm_A 3lbc_A 3lcf_A 3lcl_A
3lcg_A 3lch_A 3lci_A 1hl2_A 1fdy_A 1fdz_A 1nal_1 3lcx_A
3lcw_A
Length = 303
Score = 130 bits (328), Expect = 2e-33
Identities = 39/220 (17%), Positives = 88/220 (40%), Gaps = 20/220 (9%)
Query: 526 TRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADN-SPIPVIIYNNTFV 584
T + L A + G +A + P+Y + + +H+ ++ D+ +P+++YN +
Sbjct: 92 TAESQQLAASAKRYGFDAVSAVTPFY--YPFSFEEHCDHYRAIIDSADGLPMVVYN---I 146
Query: 585 ---TNIDISVDTLVKLAHHENIRGVKDT--DNIKLANMANQTKDLNFSVFAGSAGYLLSG 639
+ + +++D + L + + T D ++ + + D ++ G SG
Sbjct: 147 PALSGVKLTLDQINTLVTLPGVGALXQTSGDLYQMEQIRREHPD--LVLYNGYDNIFASG 204
Query: 640 LLVGCAGGINALSAVLGGPICELYDLAKAGKWEEAMKLQHRLVKPDVTVRNVLLMKEMGV 699
LL G GGI + ++G + K G + A KLQ K V ++L+ +
Sbjct: 205 LLAGADGGIGSTYNIMGWRYQGIVKALKEGDIQTAQKLQTECNK----VIDLLIKTGVFR 260
Query: 700 PGVRAAMELYGYY-GGRSRRPLPAALKPGGAEKIKQVLTE 738
++ + R+P + ++K + +
Sbjct: 261 G-LKTVLHYMDVVSVPLCRKPF-GPVDEKYLPELKALAQQ 298
Score = 38.5 bits (90), Expect = 0.006
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 296 DLTGVFSALPTPFREDEEIDFEKFKFNV 323
+L GV +AL TPF + + +D + V
Sbjct: 11 NLRGVMAALLTPFDQQQALDKASLRRLV 38
>4dpp_A DHDPS 2, dihydrodipicolinate synthase 2, chloroplastic; amino-acid
biosynthesis, (S)-lysine biosynthesis VIA DAP PAT
(beta/alpha)8-barrel; 2.00A {Arabidopsis thaliana} PDB:
4dpq_A*
Length = 360
Score = 125 bits (317), Expect = 1e-31
Identities = 54/224 (24%), Positives = 86/224 (38%), Gaps = 36/224 (16%)
Query: 526 TRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFV- 584
TR I T++ G +AAL + PYY K + + + HF SV P IIYN V
Sbjct: 140 TREAIHATEQGFAVGMHAALHINPYY--GKTSIEGLIAHFQSVLHMGPT--IIYN---VP 192
Query: 585 --TNIDISVDTLVKLAHHENIRGVKD-TDNIKLANMANQTKDLNFSVFAGS-AGYLLSGL 640
T DI + KL+ + N+ GVK+ N ++ V++G+ S
Sbjct: 193 GRTGQDIPPRAIFKLSQNPNLAGVKECVGNKRVEEYTEN----GVVVWSGNDDECHDSRW 248
Query: 641 LVGCAGGINALSAVLGGPICELYDLAKAGKWEEAMKLQHRLVKPDVTVRNVLLMKEMGV- 699
G G I+ S ++ G + +L + L +L+ LM +
Sbjct: 249 DYGATGVISVTSNLVPGLMRKLMFEGRNS------SLNSKLLP---------LMAWLFHE 293
Query: 700 --P-GVRAAMELYGYYGGRSRRPLPAALKPGGAEKIKQVLTEAG 740
P G+ A+ G R P L + +++ E G
Sbjct: 294 PNPIGINTALAQLGVSRPVFRLPY-VPLPLSKRLEFVKLVKEIG 336
Score = 43.8 bits (104), Expect = 1e-04
Identities = 20/105 (19%), Positives = 37/105 (35%), Gaps = 23/105 (21%)
Query: 216 HHHQSQSKHHHSKPLSRTMFGPVSRLCLKVTSRTLSIQDKEEPNVLLSRTMLGPVSRLCL 275
HHH HHH P+ + G S + L Q + + P+
Sbjct: 2 HHH-----HHHGLPIPNPLLGLDS-------TENLYFQGIDPFTAAVVPNFHLPMR---- 45
Query: 276 KVTSRTLSIQTMSLSSSTQLDLTGVFSALPTPFREDEEIDFEKFK 320
S++ + +++ + V +A+ TP+ D D E +
Sbjct: 46 -------SLEVKNRTNTDDIKALRVITAIKTPYLPDGRFDLEAYD 83
>2hmc_A AGR_L_411P, dihydrodipicolinate synthase; alpha-beta barrel (TIM
barrel), structural genomics, PSI-2, structure
initiative; HET: MSE; 1.90A {Agrobacterium tumefaciens
str}
Length = 344
Score = 118 bits (297), Expect = 5e-29
Identities = 39/222 (17%), Positives = 74/222 (33%), Gaps = 17/222 (7%)
Query: 526 TRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSP-IPVIIYNNTFV 584
T + + A K GA +++ + HF ++ +P IP +IYN+ +
Sbjct: 104 TASAVAHAVHAQKVGAKGLMVIPRVL-SRGSVIAAQKAHFKAILSAAPEIPAVIYNSPYY 162
Query: 585 TNIDISVDTLVKLAHHENIRGVKD---TDNIKLANMANQTKDLNFSVFAGSAGYLLSGLL 641
+ A H+N+ G K+ +++ A ++D ++ G ++ G +
Sbjct: 163 GFATRADLFFALRAEHKNLVGFKEFGGPADMRYAAENITSRDDEVTLMIGVDTAVVHGFV 222
Query: 642 -VGCAGGINALSAV---LGGPICELYDLAKAGKWEEAMKLQHRLVKPDVTVRNVLLMKEM 697
G G I + V +C+L A G + + VL +
Sbjct: 223 NCGATGAITGIGNVLPKEVIHLCKLSQAAAKGDADARARALELEQAL-----AVLSSFDE 277
Query: 698 G---VPGVRAAMELYGYYGGRSRRPLPAALKPGGAEKIKQVL 736
G V + M L G AL ++
Sbjct: 278 GPDLVLYFKYMMVLKGDKEYTLHFNETDALTDSQRGYVEAQF 319
Score = 38.9 bits (91), Expect = 0.005
Identities = 14/42 (33%), Positives = 18/42 (42%), Gaps = 5/42 (11%)
Query: 279 SRTLSIQTMSLSSSTQLDLTGVFSALPTPFREDEEIDFEKFK 320
L Q M+ S +GV AL TP R+D DF+
Sbjct: 14 RENLYFQGMTAS-----IFSGVIPALMTPCRQDRTPDFDALV 50
>3b4u_A Dihydrodipicolinate synthase; structural genomics, PSI-2, MC
protein structure initiative, midwest center for
structural genomics; 1.20A {Agrobacterium tumefaciens
str}
Length = 294
Score = 109 bits (275), Expect = 1e-26
Identities = 45/220 (20%), Positives = 84/220 (38%), Gaps = 23/220 (10%)
Query: 526 TRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVAD---NSPIPVIIYNNT 582
D + +A AGA L+ P YF K +++D ++ F +V +++YN
Sbjct: 84 IEDAADQSAEALNAGARNILLAPPSYF-KNVSDDGLFAWFSAVFSKIGKDARDILVYNIP 142
Query: 583 FVTNIDISVDTLVKLA--HHENIRGVKD-TDNI-KLANMANQTKDLNFSVFAGSAGYLLS 638
VT + +SV+ + +L + GVKD + N + + D ++ G L
Sbjct: 143 SVTMVTLSVELVGRLKAAFPGIVTGVKDSSGNWSHTERLLKEHGD--LAILIGDERDLAR 200
Query: 639 GLLVGCAGGINALSAVLGGPICELYDLAKAGKWEEAMKLQHRLVKPDVTVRNVLLMKEMG 698
G+ +G G I+ ++ L E+ +A GK + + + V +K +
Sbjct: 201 GVRLGGQGAISGVANFLTQ---EVRAMAVDGKDDPRIVDLVVELLK-FPVTPA--VKVLV 254
Query: 699 VPGVRAAMELYGYYGGRSRRPLPAALKPGGAEKIKQVLTE 738
+ R PL A+ P +I+
Sbjct: 255 ------SHTTGETIWSDVRAPL-VAISPEDRRQIEGAFDA 287
Score = 38.0 bits (89), Expect = 0.007
Identities = 8/24 (33%), Positives = 13/24 (54%)
Query: 297 LTGVFSALPTPFREDEEIDFEKFK 320
G+ +AL TPF+ D +D +
Sbjct: 4 KFGLSAALTTPFKTDGTVDIDAMI 27
>3llr_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase,
methylysine binding, STR genomics consortium, SGC,
alternative promoter usage; HET: DNA BTB; 2.30A {Homo
sapiens}
Length = 154
Score = 60.6 bits (146), Expect = 5e-11
Identities = 26/77 (33%), Positives = 37/77 (48%), Gaps = 8/77 (10%)
Query: 356 GLAEGDLVWGSVKGYPSWPGKLISPAPT------QGRVWVKWFGMSNEPLSEVEPATLKS 409
G G+LVWG ++G+ WPG+++S T +G WV WFG + S V L
Sbjct: 16 GFGIGELVWGKLRGFSWWPGRIVSWWMTGRSRAAEGTRWVMWFG--DGKFSVVCVEKLMP 73
Query: 410 LSQGLEAHHRSRKKLQG 426
LS A H++ Q
Sbjct: 74 LSSFCSAFHQATYNKQP 90
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 63.7 bits (154), Expect = 2e-10
Identities = 77/472 (16%), Positives = 156/472 (33%), Gaps = 138/472 (29%)
Query: 204 HHHSHHHRSHSHHHHQSQSKHHHSKPLSRTMFGP--VSRL-CLKVTSRTLSIQDKEE-PN 259
HHH HHH + ++ + LS +F V C V SI KEE +
Sbjct: 1 HHH-HHHMDFE----TGEHQYQYKDILS--VFEDAFVDNFDCKDVQDMPKSILSKEEIDH 53
Query: 260 VLLSRTMLGPVSRLCLKVTSRTLSIQTMSLSSSTQLDLTGVFSALPTPFREDEEI----- 314
+++S+ + RL + S+ + + +++ + S + T R+ +
Sbjct: 54 IIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYI 113
Query: 315 --------DFEKF-KFNVSKWEKV-PLKGSDSDHSADSDDDSAVATTTKLLGL--AEGDL 362
D + F K+NVS+ + L+ LL L A+ L
Sbjct: 114 EQRDRLYNDNQVFAKYNVSRLQPYLKLR-------------------QALLELRPAKNVL 154
Query: 363 VWGSVKGYPSWPGK--LISPAPTQGRV---------WVKWFGMSNEPLSEVEPATLKSLS 411
+ G V G GK + +V W+ N P + +E L+ L
Sbjct: 155 IDG-VLGS----GKTWVALDVCLSYKVQCKMDFKIFWLN-LKNCNSPETVLEM--LQKLL 206
Query: 412 QGLEAHHRSR-KKLQGLPVVAGQA-----HFAGAHPGP------------------GVG- 446
++ + SR + + + P +
Sbjct: 207 YQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSC 266
Query: 447 QMMV-----------SSVSFSHYFKAHSSTSMPIQKRKSLLRKFPLWPELEPSTSELKRS 495
++++ S+ + +H H S ++ + KSLL K+ L+ +L R
Sbjct: 267 KILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKY-----LDCRPQDLPRE 321
Query: 496 DR---PMSVG--PRSVRPSEREWQ--ADLLKPQKHTTTRATIDLTQKAAKAGANAALILC 548
P + S+R W + + T ++++ +L
Sbjct: 322 VLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLN--------------VLE 367
Query: 549 PYYFQKKMTEDLIYEHFISVADNSPIP----VIIYNNTFVTNIDISVDTLVK 596
P ++K +++ ++ IP +I+ + +++ + V+ L K
Sbjct: 368 PAEYRK------MFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHK 413
Score = 60.6 bits (146), Expect = 2e-09
Identities = 73/464 (15%), Positives = 145/464 (31%), Gaps = 148/464 (31%)
Query: 213 HSHHHHQ----SQSKHHHSKPLSRTMFGP--VSRL-CLKVTSRTLSIQDKEE-PNVLLSR 264
H HHHH + ++ + LS +F V C V SI KEE ++++S+
Sbjct: 1 HHHHHHMDFETGEHQYQYKDILS--VFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSK 58
Query: 265 TMLGPVSRLCLKVTSRTLSIQTMSLSSSTQLDLTGVFSALPTPFREDEEI---------- 314
+ RL + S+ + + +++ + S + T R+ +
Sbjct: 59 DAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDR 118
Query: 315 ---DFEKF-KFNVSKWEKV-PLKGSDSDHSADSDDDSAVATTTKLLGL--AEGDLVWGSV 367
D + F K+NVS+ + L+ LL L A+ L+ G V
Sbjct: 119 LYNDNQVFAKYNVSRLQPYLKLR-------------------QALLELRPAKNVLIDG-V 158
Query: 368 KGYPSWPGK--LISPAPTQGRV---------WVKWFGMSNEPLSEVEPATLKSLSQGLEA 416
G GK + +V W+ N P + +E L+ L ++
Sbjct: 159 LGS----GKTWVALDVCLSYKVQCKMDFKIFWLN-LKNCNSPETVLEM--LQKLLYQIDP 211
Query: 417 HHRSR-KKLQGLPVVAGQA-----HFAGAHPGP------------------GVG-QMMV- 450
+ SR + + + P + ++++
Sbjct: 212 NWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLT 271
Query: 451 ----------SSVSFSHYFKAHSSTSMPIQKRKSLLRKFPLWPELEPSTSELKRSDR--- 497
S+ + +H H S ++ + KSLL K+ L+ +L R
Sbjct: 272 TRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKY-----LDCRPQDLPREVLTTN 326
Query: 498 PMSVG--PRSVRPSEREWQ--ADLLKPQKHTTTRATIDLTQKAAKAGANAALILCPYYFQ 553
P + S+R W + + T ++++ +L P ++
Sbjct: 327 PRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLN--------------VLEPAEYR 372
Query: 554 KKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKL 597
K +++ + F + I L +
Sbjct: 373 K------MFDRL----------SV-----FPPSAHIPTILLSLI 395
>3qby_A Hepatoma-derived growth factor-related protein 2; HDGF2, structural
genomics consortium, SGC, protein binding; HET: M3L;
1.95A {Homo sapiens} PDB: 3qj6_A* 3eae_A 1n27_A
Length = 94
Score = 55.0 bits (132), Expect = 1e-09
Identities = 17/69 (24%), Positives = 31/69 (44%), Gaps = 7/69 (10%)
Query: 360 GDLVWGSVKGYPSWPGKLISPA-----PTQGRVWVKWFGMSNEPLSEVEPATLKSLSQGL 414
GDLV+ +KGYP WP ++ A P + + +FG + + P L +
Sbjct: 9 GDLVFAKMKGYPHWPARIDDIADGAVKPPPNKYPIFFFG--THETAFLGPKDLFPYDKCK 66
Query: 415 EAHHRSRKK 423
+ + + K+
Sbjct: 67 DKYGKPNKR 75
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 60.8 bits (147), Expect = 1e-09
Identities = 73/422 (17%), Positives = 119/422 (28%), Gaps = 156/422 (36%)
Query: 7 ITIY-----VSQTPSTSSLSSNLYTSTSSGN-----VFTSSSIGQSNFTPSSSGSNVY-- 54
I Y +++ P +S L+ + GN +F GQ N ++ Y
Sbjct: 123 IKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFG----GQGN-------TDDYFE 171
Query: 55 -------TSNPSGTSSVYTTISSSATNSVYTISSTAP--SSVYT------------SSPP 93
T + V I SA ++ + T V+T S+ P
Sbjct: 172 ELRDLYQTYHV----LVGDLIKFSA-ETLSELIRTTLDAEKVFTQGLNILEWLENPSNTP 226
Query: 94 DTTTL--SPIEAGGAPS-P-------------CHSLEVPPSPLLPDDNHPSPTSTSVH-- 135
D L PI S P L P L + H
Sbjct: 227 DKDYLLSIPI------SCPLIGVIQLAHYVVTAKLLGFTPGELR-----SYLKGATGHSQ 275
Query: 136 ------LVSSSNTDWSDVNPDSDGFVT-------------PKPSGVPPSSSTTTFVKRLF 176
++ +++ W +T P S +PPS + ++
Sbjct: 276 GLVTAVAIAETDS-WESFFVSVRKAITVLFFIGVRCYEAYPNTS-LPPSILEDS-LENNE 332
Query: 177 SPPTP-----GSSKDFVES------SSSPP----------THRSY---G--RS-HHHSHH 209
P+P +++ V+ S P ++ G +S + +
Sbjct: 333 GVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLT 392
Query: 210 HRSHSHHHHQSQSKHHHS--KPLSRTMFGPV-----SRLCLKVTSRTLSIQDKEEPNVLL 262
R QS+ S K F PV S L L S + +D + NV
Sbjct: 393 LRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHL-LVPASDLI-NKDLVKNNVSF 450
Query: 263 SRTMLG-PV------SRLCLKVTSRTLSI------------QTMSLSSSTQLDL-TGVFS 302
+ + PV S L + S + I T ++ LD G S
Sbjct: 451 NAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGPGGAS 510
Query: 303 AL 304
L
Sbjct: 511 GL 512
Score = 60.8 bits (147), Expect = 2e-09
Identities = 68/418 (16%), Positives = 119/418 (28%), Gaps = 168/418 (40%)
Query: 380 PAPTQGRVWVKWFGMSNEPLS--------------EVEPATLKSLSQGLEAHHRS--RKK 423
P PT+G F +EP + VEP+ + Q L
Sbjct: 42 PEPTEG------FAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCY 95
Query: 424 LQGLPVVAGQAH-FAGAHPGPGVGQMMVSSVSFSHYFKAHSSTSMPIQKRKS--LLRK-- 478
L+G + H A ++ + +Y A P K+ + L R
Sbjct: 96 LEGNDI-----HALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVG 150
Query: 479 ---------F-------PLWPELEPSTSELKRSDRPMSVGPRSVRPSEREWQADLLKPQK 522
F + EL +L ++ + VG ++ S A+ L
Sbjct: 151 EGNAQLVAIFGGQGNTDDYFEEL----RDLYQTYHVL-VGD-LIKFS-----AETLSE-- 197
Query: 523 HTTTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNT 582
R T+D F + + +++ ++ N+P +
Sbjct: 198 --LIRTTLD----------------AEKVFTQGL--NIL--EWLENPSNTP------DKD 229
Query: 583 FVTNIDISVD--TLVKLAHHENIRGVKDTDNIKLANMANQTKDLNFSVFAGSAGY----- 635
++ +I IS +++LAH + V A G+
Sbjct: 230 YLLSIPISCPLIGVIQLAH--------------------------YVVTAKLLGFTPGEL 263
Query: 636 --LLSGLLVGCAGGINALSAVLGGPICELYDLAKAGKWEEAMKLQHRLVKPDVTVRNVLL 693
L G G + G+ ++AV +A+ WE
Sbjct: 264 RSYLKGAT-GHSQGL--VTAVA---------IAETDSWESFFVS---------------- 295
Query: 694 MKEMGVPGVRAAMELYGYYGGRSRRPLP-AALKPGGAEKIKQVLTEAGFLVPGVRAAM 750
VR A+ + + G R P +L P I + E GV + M
Sbjct: 296 --------VRKAITVLFFIGVRCYEAYPNTSLPP----SILEDSLENNE---GVPSPM 338
Score = 51.2 bits (122), Expect = 1e-06
Identities = 90/575 (15%), Positives = 155/575 (26%), Gaps = 251/575 (43%)
Query: 89 TSSPPDTTTLSPIEAGGAPSPCHSLEVPPSPL-----LPDD---NHPSPTSTSVHLVSSS 140
S+ P T + +E H L VP + L + P PT
Sbjct: 4 YSTRPLTLSHGSLE--------HVLLVPTASFFIASQLQEQFNKILPEPTEGF------- 48
Query: 141 NTDWSDVNPDSD--------GFVTPKPSGVPPSSSTT----------------------- 169
+D P + G+V+ V PS
Sbjct: 49 ---AADDEPTTPAELVGKFLGYVSSL---VEPSKVGQFDQVLNLCLTEFENCYLEGNDIH 102
Query: 170 TFVKRLF--SPPTPGSSKDFVESSSSPPTHRSYGRSHHHSHHHRSHSHHHHQSQSKHHHS 227
+L + T +K+ + ++Y + + + K +S
Sbjct: 103 ALAAKLLQENDTTLVKTKELI---------KNYITARIMA----------KRPFDKKSNS 143
Query: 228 KPLSR----------TMFG--PVSRLCLKVTSRTLSIQDKEEPNVL--LSRTMLGPVSRL 273
L R +FG + EE L L +T V L
Sbjct: 144 -ALFRAVGEGNAQLVAIFGGQGNTDDYF------------EE---LRDLYQTYHVLVGDL 187
Query: 274 CLKVTSRTLSIQTMSLSSSTQLDLTGVFSALPTPFREDEEIDFEKFKFNVSKWEKVPLKG 333
+K ++ TLS L +T D E F + N+ +W L+
Sbjct: 188 -IKFSAETLS----ELIRTT----------------LDAEKVFTQ-GLNILEW----LEN 221
Query: 334 SDSDHSADSDDDSAVA-------------TTTKLLGLAEGDL------VWGSVKGYPSWP 374
+ D ++ T KLLG G+L G +G +
Sbjct: 222 PSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVT-- 279
Query: 375 GKLISPAPT---------QGRVWVKWFGM-SNE--PLSEVEPATLK-SLSQG-------L 414
I+ + + + + G+ E P + + P+ L+ SL L
Sbjct: 280 AVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPML 339
Query: 415 EAHHRSRKKLQG--------LP----------------VVAG--------QAHFAGAHPG 442
+ +++++Q LP VV+G A
Sbjct: 340 SISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAP 399
Query: 443 PGVGQMMVSSVSFSHYFKAHSSTSMPIQKRK-SLLRKF---------PLWPELEPSTSEL 492
G+ Q S + FS +RK +F L L P++ +
Sbjct: 400 SGLDQ---SRIPFS--------------ERKLKFSNRFLPVASPFHSHL---LVPASDLI 439
Query: 493 KRSDRPMSVGPRSVRPSEREWQA-DLLKPQKHTTT 526
D + + + A D+ P T
Sbjct: 440 N-KD---------LVKNNVSFNAKDIQIPVYDTFD 464
Score = 32.7 bits (74), Expect = 0.62
Identities = 39/244 (15%), Positives = 73/244 (29%), Gaps = 101/244 (41%)
Query: 392 FGMSNEPLSEVE---PA-TLKSLS--QGLEAHHRSRKKLQGLPVVAGQAHFAGAHPGPGV 445
F LS + PA TL + + L++ +GL + A FAG H +
Sbjct: 1719 FRSEKGLLSATQFTQPALTLMEKAAFEDLKS--------KGL--IPADATFAG-HS---L 1764
Query: 446 GQMMVSSVSFSHYFKA--HSSTSMPIQ-------KRKSLLRKFPLWPELEPSTSELKRSD 496
G+ ++ A + M I+ R ++ P EL RS+
Sbjct: 1765 GE-------YA----ALASLADVMSIESLVEVVFYRGMTMQVAV--PR-----DELGRSN 1806
Query: 497 RPMSVGPRSVRPSEREWQADLLKPQKHTTTRATIDLTQKAAKAGANAALILCPYYFQKKM 556
M ++ P R +Q+A + K+
Sbjct: 1807 YGMI----AINPG-----------------RVAASFSQEALQYVVERV--------GKRT 1837
Query: 557 TEDLIYEHFISVA-DNSPIPVIIYNNTFVTNIDIS-----VDTLVKLAHHENIRGVKDTD 610
+ + N N +V + +DT+ + + ++ + D
Sbjct: 1838 GW------LVEIVNYNVE------NQQYV----AAGDLRALDTVTNVLNFIKLQKI---D 1878
Query: 611 NIKL 614
I+L
Sbjct: 1879 IIEL 1882
Score = 30.0 bits (67), Expect = 4.5
Identities = 22/119 (18%), Positives = 41/119 (34%), Gaps = 35/119 (29%)
Query: 589 ISVDTLVKLAHHENIRGV-------KDTDNIKLANMA--NQTK--------DLNFSV--F 629
+S+++LV++ + RG+ +D M N + L + V
Sbjct: 1777 MSIESLVEVVFY---RGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERV 1833
Query: 630 AGSAGYLLS-------GLLVGCAGGINALSAVLGGPICELYDLAKAGKWEEAMKLQHRL 681
G+L+ AG + AL V + + K K + ++LQ L
Sbjct: 1834 GKRTGWLVEIVNYNVENQQYVAAGDLRALDTV-----TNVLNFIKLQK-IDIIELQKSL 1886
>2daq_A WHSC1L1 protein, isoform long; PWWP domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: b.34.9.2
Length = 110
Score = 53.0 bits (127), Expect = 8e-09
Identities = 13/76 (17%), Positives = 27/76 (35%), Gaps = 12/76 (15%)
Query: 360 GDLVWGSVKGYPSWPGKLISPA----------PTQGRVWVKWFGMSNEPLSEVEPATLKS 409
+VW + Y WP ++ +P G V +FG S++ V +
Sbjct: 12 KQIVWVKLGNYRWWPAEICNPRSVPLNIQGLKHDLGDFPVFFFG-SHD-YYWVHQGRVFP 69
Query: 410 LSQGLEAHHRSRKKLQ 425
+G ++ + +
Sbjct: 70 YVEGDKSFAEGQTSIN 85
>1ri0_A Hepatoma-derived growth factor; HDGF, HATH domain, PWWP domain,
heparin-binding, hormone/growth factor complex; NMR
{Homo sapiens} SCOP: b.34.9.2 PDB: 2b8a_A 2nlu_A
Length = 110
Score = 52.4 bits (125), Expect = 2e-08
Identities = 18/69 (26%), Positives = 29/69 (42%), Gaps = 7/69 (10%)
Query: 360 GDLVWGSVKGYPSWPGKLISPA-----PTQGRVWVKWFGMSNEPLSEVEPATLKSLSQGL 414
GDLV+ +KGYP WP ++ T + V +FG + + P L +
Sbjct: 23 GDLVFAKMKGYPHWPARIDEMPEAAVKSTANKYQVFFFG--THETAFLGPKDLFPYEESK 80
Query: 415 EAHHRSRKK 423
E + K+
Sbjct: 81 EKFGKPNKR 89
>1khc_A DNA cytosine-5 methyltransferase 3B2; five beta-sheets barrel
followed by five-helix bundle; HET: DNA; 1.80A {Mus
musculus} SCOP: b.34.9.2 PDB: 3flg_A* 3qkj_A*
Length = 147
Score = 52.9 bits (126), Expect = 2e-08
Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 8/70 (11%)
Query: 360 GDLVWGSVKGYPSWPGKLISPAPTQ------GRVWVKWFGMSNEPLSEVEPATLKSLSQG 413
GDLVWG +KG+ WP ++S T G WV+WFG + SE+ L +L
Sbjct: 15 GDLVWGKIKGFSWWPAMVVSWKATSKRQAMPGMRWVQWFG--DGKFSEISADKLVALGLF 72
Query: 414 LEAHHRSRKK 423
+ + +
Sbjct: 73 SQHFNLATFN 82
>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription,
mRNA, multiprotein complex; HET: UTP; 2.30A
{Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A
1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A*
1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A*
1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ...
Length = 1733
Score = 55.9 bits (134), Expect = 5e-08
Identities = 44/217 (20%), Positives = 79/217 (36%), Gaps = 15/217 (6%)
Query: 4 ASPITIYVSQTPSTSSLSSNLYTSTSSGNVFTSSSIGQSNFTPSSSGSNVYTSNPSGTSS 63
S + S + + ++ ++ G +++ ++S + TS
Sbjct: 1476 ESGLVNADLDVKDELMFSPLVDSGSNDAMAGGFTAYGGADYGEATSPFG--AYGEAPTSP 1533
Query: 64 VYTTISS--SATNSVYTISSTAPS---SVYTSSPPDTTTLSPIEAGGAP--SPCHSLEVP 116
+ S S T+ Y+ +S A S Y+ + P + SP + +P SP P
Sbjct: 1534 GFGVSSPGFSPTSPTYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1593
Query: 117 PSPLL-PDDNHPSPTSTSVHLVSSSNTDWSDVNPDSDGFVTPKPSGVPPSSSTTTFVKRL 175
SP P SPTS S S S + S + +P P+S + +
Sbjct: 1594 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1653
Query: 176 FSPPTPG---SSKDFVESSS--SPPTHRSYGRSHHHS 207
+SP +P +S + +S SP + S +S
Sbjct: 1654 YSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1690
Score = 53.9 bits (129), Expect = 2e-07
Identities = 54/198 (27%), Positives = 81/198 (40%), Gaps = 19/198 (9%)
Query: 5 SPITIYVSQTPSTSSLSSNLYTSTSSGNVFTSS--SIGQSNFTPSSSGSNVYTSNPSGTS 62
SP + S T S +S Y+ TS TS S +++P+S + + + S TS
Sbjct: 1543 SPTSPTYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1602
Query: 63 SVY--TTISSSATNSVYTISS---TAPSSVYTSSPPDTTTLSPIEAGGAP--SPCHSLEV 115
Y T+ S S T+ Y+ +S + S Y+ + P + SP + +P SP
Sbjct: 1603 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYS 1662
Query: 116 PPSP-LLPDDNHPSPTSTSVHLVSSSNTDWS-DVNPDSDGFVTPKPSGVPPSSSTTTFVK 173
P SP P SPTS S S S + S + +P S P S P S +
Sbjct: 1663 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPTS-----PSYSPTSPGYSPGS--- 1714
Query: 174 RLFSPPTPGSSKDFVESS 191
+SP + E+S
Sbjct: 1715 PAYSPKQDEQKHNENENS 1732
Score = 49.7 bits (118), Expect = 4e-06
Identities = 50/199 (25%), Positives = 83/199 (41%), Gaps = 20/199 (10%)
Query: 12 SQTPSTSSLSSNLYTSTSSGNVFTSSSIGQSNFTPSSSGSNVYTSNPSGTSSVYTTISS- 70
+ T +SS ++ TS TS + ++P+S + + + S TS Y+ S
Sbjct: 1529 APTSPGFGVSSPGFSPTSPTYSPTSPA-----YSPTSPSYSPTSPSYSPTSPSYSPTSPS 1583
Query: 71 -SATNSVYTISSTAPSSVYTSSPPDTTTLSPIEAGGAP-SPCHSLEVPPSPLLPDDNHP- 127
S T+ Y+ +S + S S P + + SP +P SP +S P SP +
Sbjct: 1584 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS---PTSPSYSPTSPSY 1640
Query: 128 SPTSTSVHLVSSSNTDWSDVNPDSDGFVTPKPSGVPPSSSTTTFVKRLFSPPTPG---SS 184
SPTS S S S + S + +P P+S + + +SP +P +S
Sbjct: 1641 SPTSPSYSPTSPSYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPTS 1700
Query: 185 KDFVESSSSP---PTHRSY 200
+ S +SP P +Y
Sbjct: 1701 PSY--SPTSPGYSPGSPAY 1717
Score = 46.6 bits (110), Expect = 4e-05
Identities = 46/210 (21%), Positives = 73/210 (34%), Gaps = 19/210 (9%)
Query: 3 QASPITIYVSQTPSTSSLSSNLYTSTSSGNVFTSSSIGQSNFTPSSSGSNVYTSNPSGTS 62
SP+ S ++ +S G P+S G V + S TS
Sbjct: 1491 MFSPLVDSGSNDAMAGGFTAYGGADYGEA----TSPFGAYGEAPTSPGFGVSSPGFSPTS 1546
Query: 63 SVYTTISSSATNSVYTISSTAP-----SSVYTSSPPDTTTLSPIEAGGAP--SPCHSLEV 115
Y+ S + + + + S T+P S Y+ + P + SP + +P SP
Sbjct: 1547 PTYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1606
Query: 116 PPSPLL--------PDDNHPSPTSTSVHLVSSSNTDWSDVNPDSDGFVTPKPSGVPPSSS 167
P SP P SPTS S S S + S + +P P+S
Sbjct: 1607 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSP 1666
Query: 168 TTTFVKRLFSPPTPGSSKDFVESSSSPPTH 197
+ + +SP +P S S + P +
Sbjct: 1667 SYSPTSPSYSPTSPSYSPTSPSYSPTSPNY 1696
Score = 43.5 bits (102), Expect = 3e-04
Identities = 39/204 (19%), Positives = 67/204 (32%), Gaps = 9/204 (4%)
Query: 25 YTSTSSGNVFTSSSIGQSNFTPSSSGSNVYTSNPSGTSSVYTTISSSATNSVYTISSTAP 84
Y++ S + F+P S + G ++ AT+
Sbjct: 1473 YSNESGLVNADLDVKDELMFSPLV-DSGSNDAMAGGFTAYGGADYGEATSPFGAYGEAPT 1531
Query: 85 SSVYTSSPPDTTTLSPIEAGGAP--SPCHSLEVPPSPLLPDDNHPSPTSTSVHLVSSSNT 142
S + S P + SP + +P SP P SP SPTS S S S +
Sbjct: 1532 SPGFGVSSPGFSPTSPTYSPTSPAYSPTSPSYSPTSP------SYSPTSPSYSPTSPSYS 1585
Query: 143 DWSDVNPDSDGFVTPKPSGVPPSSSTTTFVKRLFSPPTPGSSKDFVESSSSPPTHRSYGR 202
S + +P P+S + + +SP +P S S + P++
Sbjct: 1586 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1645
Query: 203 SHHHSHHHRSHSHHHHQSQSKHHH 226
S+ + S + + S +
Sbjct: 1646 SYSPTSPSYSPTSPAYSPTSPSYS 1669
Score = 39.7 bits (92), Expect = 0.004
Identities = 36/203 (17%), Positives = 58/203 (28%), Gaps = 8/203 (3%)
Query: 11 VSQTPSTSSLSSNLYTSTSSGNVFTSSSIGQSNFTPSSSGSNVYTSNPSGTSSVYTTISS 70
+ + + + + + S + S + + T
Sbjct: 1453 YMPEQKITEIEDGQDGGVTPYSNESGLVNADLDVKDELMFSPLVDSGSNDAMAGGFTAYG 1512
Query: 71 SATNSVYTISSTAPSSVYTSSPPDTTTLSPIEAGGAPSPCHSLEVPPSPLL-PDDNHPSP 129
A T A TS P SP SP P SP P SP
Sbjct: 1513 GADYGEATSPFGAYGEAPTS--PGFGVSSP-----GFSPTSPTYSPTSPAYSPTSPSYSP 1565
Query: 130 TSTSVHLVSSSNTDWSDVNPDSDGFVTPKPSGVPPSSSTTTFVKRLFSPPTPGSSKDFVE 189
TS S S S + S + +P P+S + + +SP +P S
Sbjct: 1566 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1625
Query: 190 SSSSPPTHRSYGRSHHHSHHHRS 212
S + P++ S+ + S
Sbjct: 1626 YSPTSPSYSPTSPSYSPTSPSYS 1648
>2l89_A PWWP domain-containing protein 1; histone binding, protein binding;
NMR {Schizosaccharomyces pombe}
Length = 108
Score = 50.0 bits (119), Expect = 9e-08
Identities = 17/79 (21%), Positives = 27/79 (34%), Gaps = 13/79 (16%)
Query: 360 GDLVWGSVKGYPSWPGKLISPA----------PTQGRVWVKWFGMSN---EPLSEVEPAT 406
GD + GYP WP L+ V +F N + V+P
Sbjct: 9 GDRILVKAPGYPWWPALLLRRKETKDSLNTNSSFNVLYKVLFFPDFNFAWVKRNSVKPLL 68
Query: 407 LKSLSQGLEAHHRSRKKLQ 425
+++ L + R K+L
Sbjct: 69 DSEIAKFLGSSKRKSKELI 87
>2gfu_A DNA mismatch repair protein MSH6; PWWP domain, tudor domain, DNA
binding, DNA binding protein; HET: DNA; NMR {Homo
sapiens}
Length = 134
Score = 49.0 bits (116), Expect = 4e-07
Identities = 21/103 (20%), Positives = 34/103 (33%), Gaps = 13/103 (12%)
Query: 332 KGSDSDHSADSDDDSAVATTTKLLGLAEGDLVWGSVKGYPSWPGKLISPAPT-------- 383
K + + A T++ + GDLVW ++GYP WP + +
Sbjct: 1 KAKNLNGGLRRSVAPAAPTSSDF---SPGDLVWAKMEGYPWWPSLVYNHPFDGTFIREKG 57
Query: 384 -QGRVWVKWFGMSNEPLSEVEPATLKSLSQGLEAHHRSRKKLQ 425
RV V++F S V LK + +
Sbjct: 58 KSVRVHVQFFDDSPT-RGWVSKRLLKPYTGSKSKEAQKGGHFY 99
>1h3z_A Hypothetical 62.8 kDa protein C215.07C; nuclear protein, PWWP,
chromatin, beta-barrel; NMR {Schizosaccharomyces pombe}
SCOP: b.34.9.2
Length = 109
Score = 47.3 bits (112), Expect = 9e-07
Identities = 16/83 (19%), Positives = 28/83 (33%), Gaps = 17/83 (20%)
Query: 360 GDLVWGSVKGYPSWPGKLISPA------------PTQGRVWVKWFGMSNE----PLSEVE 403
G V + G+P WP +++ + V +F + E +
Sbjct: 10 GMRVLTKMSGFPWWPSMVVTESKMTSVARKSKPKRAGTFYPVIFFP-NKEYLWTGSDSLT 68
Query: 404 PATLKSLSQGLEAHHRSRKKLQG 426
P T +++SQ LE L
Sbjct: 69 PLTSEAISQFLEKPKPKTASLIK 91
>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription,
multi-protein complex, DNA- binding, magnesium; 3.65A
{Schizosaccharomyces pombe}
Length = 1752
Score = 50.1 bits (119), Expect = 3e-06
Identities = 56/229 (24%), Positives = 81/229 (35%), Gaps = 25/229 (10%)
Query: 12 SQTP-STSSLSSNLYTSTSSGNVFT----SSSIGQSNFTPSSSGSNVYTSNPSGTSSVYT 66
+ TP S + + + + F+ S G+ F + S YT
Sbjct: 1482 AGTPYERSPMVDSGFVGSPDAAAFSPLVQGGSEGREGFGDYGLLGA-ASPYKGVQSPGYT 1540
Query: 67 TISSSATNSVYTISSTA--PSSVYTSSPPDTTTLSPIEAGGAPSPCHSLEVPPSPLL-PD 123
+ SSA + Y ++S + PSS S+ P SP + SP P SP P
Sbjct: 1541 SPFSSAMSPGYGLTSPSYSPSSPGYSTSPAYMPSSP-----SYSPTSPSYSPTSPSYSPT 1595
Query: 124 DNHPSPTSTSVHLVSSSNTDWSDVNPDSDGFVTPKPSGVPPSSSTTTFVKRLFSPPTPGS 183
SPTS S S S + P S + +P P+S + + +SP +P
Sbjct: 1596 SPSYSPTSPSYSATSPSYS------PTSPSY-SPTSPSYSPTSPSYSPTSPSYSPTSPSY 1648
Query: 184 SKDFVESSSSPPTHRSYG-RSHHHSHHHRSHSHHHHQSQSKHHHSKPLS 231
S S S PT SY S +S S+S P S
Sbjct: 1649 SP---TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1694
Score = 47.8 bits (113), Expect = 1e-05
Identities = 51/188 (27%), Positives = 79/188 (42%), Gaps = 10/188 (5%)
Query: 3 QASPITIYVSQTPSTSSLSSNLYTSTSSGNVFTSS--SIGQSNFTPSSSGSNVYTSNPSG 60
SP + S +P+ S + Y+ TS TS S +++P+S + + + S
Sbjct: 1557 SYSPSSPGYSTSPAYMPSSPS-YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSATSPSYSP 1615
Query: 61 TSSVYTTISSSATNSVYTISSTAPSSVYTSSPPDTT--TLSPIEAGGAP-SPCHSLEVPP 117
TS Y+ S S + + + S T+PS TS T + SP +P SP +S P
Sbjct: 1616 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS---PT 1672
Query: 118 SPLL-PDDNHPSPTSTSVHLVSSSNTDWSDVNPDSDGFVTPKPSGVPPSSSTTTFVKRLF 176
SP P SPTS S S S + S + +P P+S + + +
Sbjct: 1673 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1732
Query: 177 SPPTPGSS 184
SP +P S
Sbjct: 1733 SPTSPSYS 1740
Score = 44.7 bits (105), Expect = 1e-04
Identities = 50/200 (25%), Positives = 79/200 (39%), Gaps = 15/200 (7%)
Query: 5 SPITIYVSQTPSTSSLSSNLYTSTSSGNVF--TSSSIGQSNFTPSSSGSNVYTSNPS--- 59
SP+ S+ L ++ V +S S +P ++ S S
Sbjct: 1506 SPLVQGGSEGREGFGDYGLLGAASPYKGVQSPGYTSPFSSAMSPGYGLTSPSYSPSSPGY 1565
Query: 60 GTSSVYTTISSSATNSVYTISSTAPSSVYTSSPPDTTTLSPIEAGGAPSPCHSLEVPPSP 119
TS Y S S + + + S T+PS Y+ + P + SP + A SP +S P SP
Sbjct: 1566 STSPAYMPSSPSYSPTSPSYSPTSPS--YSPTSPSYSPTSP--SYSATSPSYS---PTSP 1618
Query: 120 LL-PDDNHPSPTSTSVHLVSSSNTDWS-DVNPDSDGFVTPKPSGVPPSSSTTTFVKRLFS 177
P SPTS S S S + S +P S + +P P+S + + +S
Sbjct: 1619 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTSPSYSPTSPSYS 1677
Query: 178 PPTPGSSKDFVESSSSPPTH 197
P +P S S + P++
Sbjct: 1678 PTSPSYSPTSPSYSPTSPSY 1697
Score = 44.3 bits (104), Expect = 2e-04
Identities = 46/160 (28%), Positives = 71/160 (44%), Gaps = 17/160 (10%)
Query: 5 SPITIYVSQT-PSTSSLS------SNLYTSTSSGNVFTSSSIGQSNFTPSSSGSNVYTSN 57
SP + S T PS S+ S S Y+ TS TS S ++P+S + + +
Sbjct: 1593 SPTSPSYSPTSPSYSATSPSYSPTSPSYSPTSPSYSPTSPS-----YSPTSPSYSPTSPS 1647
Query: 58 PSGTSSVY--TTISSSATNSVYTISSTAPSSVYTSSPPDTTTLSPIEAGGAP-SPCHSLE 114
S TS Y T+ S S T+ Y+ +S + S S P + + SP +P SP +S
Sbjct: 1648 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1707
Query: 115 VPP-SPLLPDDNHPSPT-STSVHLVSSSNTDWSDVNPDSD 152
P SP P + SP+ S + S ++ +S +P
Sbjct: 1708 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1747
Score = 37.0 bits (85), Expect = 0.034
Identities = 30/106 (28%), Positives = 51/106 (48%), Gaps = 4/106 (3%)
Query: 5 SPITIYVSQTPSTSSLSSNLYTSTSSGNVFTS--SSIGQSNFTPSSSGSNVYTSNPSGTS 62
SP + S T + S +S Y+ TS TS S +++P+S + + + S TS
Sbjct: 1649 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1708
Query: 63 SVYTTISSSATNSVYTISSTAPSSVYTSSPPDTTTLSPIEAGGAPS 108
Y+ S S + + + S T+PS Y+ + P + SP + +PS
Sbjct: 1709 PSYSPTSPSYSPTSPSYSPTSPS--YSPTSPSYSPTSPSYSPTSPS 1752
Score = 36.2 bits (83), Expect = 0.052
Identities = 36/118 (30%), Positives = 55/118 (46%), Gaps = 11/118 (9%)
Query: 5 SPITIYVSQTPSTSSLSSNLYTSTSSGNVFTSSSIGQSNFTPSSSGSNVYTSNPSGTSSV 64
SP + S T + S +S Y+ TS TS S ++P+S + + + S TS
Sbjct: 1642 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS-----YSPTSPSYSPTSPSYSPTSPS 1696
Query: 65 YTTISSSATNSVYTISSTAPSSVYTSS--PPDTTTLSPIEAGGAP-SPCHSLEVPPSP 119
Y+ S S + + + S T+PS TS P + + SP +P SP +S P SP
Sbjct: 1697 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS---PTSP 1751
>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus
interaction, metal-binding, nucleus, receptor,
transcription, transcription regulation, zinc-FIN
activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB:
3dzu_A* 3e00_A*
Length = 467
Score = 42.4 bits (99), Expect = 5e-04
Identities = 28/126 (22%), Positives = 46/126 (36%), Gaps = 7/126 (5%)
Query: 49 SGSNVYTSNPSGTSSVYTTISSSATNSVYTISSTAPSSVYTSSPPDTTTLSPIEAGGAPS 108
++++ + + + T S A S++ S P +T SPI G P
Sbjct: 11 DDDKMFSTQVNSSLTSPTGRGSMAAPSLHPSLGPGIGSPGQLHSPISTLSSPINGMGPPF 70
Query: 109 PC-------HSLEVPPSPLLPDDNHPSPTSTSVHLVSSSNTDWSDVNPDSDGFVTPKPSG 161
HS+ VP +P L S+ ++ VSSS + + V PSG
Sbjct: 71 SVISSPMGPHSMSVPTTPTLGFSTGSPQLSSPMNPVSSSEDIKPPLGLNGVLKVPAHPSG 130
Query: 162 VPPSSS 167
S +
Sbjct: 131 NMASFT 136
Score = 33.2 bits (75), Expect = 0.36
Identities = 15/138 (10%), Positives = 28/138 (20%), Gaps = 2/138 (1%)
Query: 106 APSPCHSLEVPPSPLLPDDNHPSPTSTSVHLVSSSNTDWSDVNPDSDGFVTPKPSGVPPS 165
++ + + + SPT S + +P + P
Sbjct: 6 HHHVDDDDKMFSTQVNS--SLTSPTGRGSMAAPSLHPSLGPGIGSPGQLHSPISTLSSPI 63
Query: 166 SSTTTFVKRLFSPPTPGSSKDFVESSSSPPTHRSYGRSHHHSHHHRSHSHHHHQSQSKHH 225
+ + SP P S + T S +
Sbjct: 64 NGMGPPFSVISSPMGPHSMSVPTTPTLGFSTGSPQLSSPMNPVSSSEDIKPPLGLNGVLK 123
Query: 226 HSKPLSRTMFGPVSRLCL 243
S M +C
Sbjct: 124 VPAHPSGNMASFTKHICA 141
Score = 32.0 bits (72), Expect = 0.93
Identities = 18/128 (14%), Positives = 36/128 (28%), Gaps = 5/128 (3%)
Query: 69 SSSATNSVYTISSTAPSSVYTSSPPDTTTLSPIEAGGAPSPCHSLEVPPSPLLPDDNHPS 128
++ S T+P+ + + P G + SP+ N
Sbjct: 12 DDKMFSTQVNSSLTSPTGRGSMAAPSLHPSLGPGIGSPGQLHSPISTLSSPI----NGMG 67
Query: 129 PTSTSVHLVSSSNTDWSDVNPDSDGFVTPKPSGVPPSSSTTTFVKRLFSPPTPGSSKDFV 188
P + + ++ P + GF T P P + ++ G K
Sbjct: 68 PPFSVISSPMGPHSMSVPTTP-TLGFSTGSPQLSSPMNPVSSSEDIKPPLGLNGVLKVPA 126
Query: 189 ESSSSPPT 196
S + +
Sbjct: 127 HPSGNMAS 134
Score = 31.6 bits (71), Expect = 0.94
Identities = 20/116 (17%), Positives = 27/116 (23%), Gaps = 9/116 (7%)
Query: 4 ASPITIYVSQTPS---------TSSLSSNLYTSTSSGNVFTSSSIGQSNFTPSSSGSNVY 54
SP PS S + ST S + +P S
Sbjct: 25 TSPTGRGSMAAPSLHPSLGPGIGSPGQLHSPISTLSSPINGMGPPFSVISSPMGPHSMSV 84
Query: 55 TSNPSGTSSVYTTISSSATNSVYTISSTAPSSVYTSSPPDTTTLSPIEAGGAPSPC 110
+ P+ S + SS N V + P S A C
Sbjct: 85 PTTPTLGFSTGSPQLSSPMNPVSSSEDIKPPLGLNGVLKVPAHPSGNMASFTKHIC 140
>3pfs_A Bromodomain and PHD finger-containing protein 3; structural
genomics, structural genomics consortium, SGC, PW
domain, protein binding; 1.90A {Homo sapiens} PDB:
3lyi_A*
Length = 158
Score = 38.4 bits (88), Expect = 0.002
Identities = 14/74 (18%), Positives = 26/74 (35%)
Query: 332 KGSDSDHSADSDDDSAVATTTKLLGLAEGDLVWGSVKGYPSWPGKLISPAPTQGRVWVKW 391
+ + S + L +LVW +GYPS+P +I P + +
Sbjct: 12 ENLYFQGDYNGSGRSLLLPFEDRGDLEPLELVWAKCRGYPSYPALIIDPKMPREGLLHNG 71
Query: 392 FGMSNEPLSEVEPA 405
+ PL ++
Sbjct: 72 VPIPVPPLDVLKLG 85
>4dnh_A Uncharacterized protein; structural genomics, PSI-biology, protein
structure initiati YORK structural genomics research
consortium; 2.50A {Sinorhizobium meliloti}
Length = 396
Score = 38.9 bits (90), Expect = 0.005
Identities = 17/109 (15%), Positives = 30/109 (27%), Gaps = 17/109 (15%)
Query: 516 DLLKPQKHTTT----RATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADN 571
D L P + A + G L+ + + V
Sbjct: 122 DHLAPGPDVSIDDILAAYESQIEAIEAEGGRIILMASRALAAAAKGPEDYIRVYDRVLSQ 181
Query: 572 SPIPVIIYN--NTFV---------TNIDISVDTLVKL--AHHENIRGVK 607
PVII+ F + ++ T + + AH + G+K
Sbjct: 182 VKEPVIIHWLGEMFDPALEGYWGNADHMAAMKTCLDVLEAHAAKVDGIK 230
>2bgs_A Aldose reductase; holoenzyme, aldo/keto reductase, oxidoreductase;
HET: NDP; 1.64A {Hordeum vulgare} PDB: 2bgq_A* 2vdg_A*
Length = 344
Score = 38.0 bits (89), Expect = 0.010
Identities = 12/30 (40%), Positives = 12/30 (40%)
Query: 205 HHSHHHRSHSHHHHQSQSKHHHSKPLSRTM 234
HH HHH HS H KH TM
Sbjct: 3 HHHHHHHHHSSGHIDDDDKHMLEASAKATM 32
>3l42_A Peregrin; transcription regulation, histone H3 acetylation,
chromatin modification, structural genomics, structural
genomics CONS SGC, activator; 1.30A {Homo sapiens} PDB:
3mo8_A* 2x4w_A* 2x35_A* 2x4x_A* 2x4y_A*
Length = 130
Score = 36.0 bits (82), Expect = 0.013
Identities = 13/42 (30%), Positives = 20/42 (47%)
Query: 357 LAEGDLVWGSVKGYPSWPGKLISPAPTQGRVWVKWFGMSNEP 398
L DLVW +GYPS+P +I P + ++ + P
Sbjct: 6 LDALDLVWAKCRGYPSYPALIIDPKMPREGMFHHGVPIPVPP 47
>3a4u_B Multiple coagulation factor deficiency protein 2; lectin, ergic,
ER, golgi, transport, disulfide bond, endopla reticulum,
ER-golgi transport; 1.84A {Homo sapiens} PDB: 2vrg_A
3lcp_C
Length = 143
Score = 34.6 bits (79), Expect = 0.045
Identities = 7/34 (20%), Positives = 11/34 (32%)
Query: 197 HRSYGRSHHHSHHHRSHSHHHHQSQSKHHHSKPL 230
H + HHHS H H + + +
Sbjct: 3 HHHHHHHHHHSSGHIEGRHMLEEPAASFSQPGSM 36
Score = 34.2 bits (78), Expect = 0.061
Identities = 9/29 (31%), Positives = 12/29 (41%)
Query: 201 GRSHHHSHHHRSHSHHHHQSQSKHHHSKP 229
G HHH HHH S H + + +
Sbjct: 2 GHHHHHHHHHHSSGHIEGRHMLEEPAASF 30
Score = 31.1 bits (70), Expect = 0.68
Identities = 7/34 (20%), Positives = 8/34 (23%)
Query: 204 HHHSHHHRSHSHHHHQSQSKHHHSKPLSRTMFGP 237
HHH HH H H +
Sbjct: 7 HHHHHHSSGHIEGRHMLEEPAASFSQPGSMGLDK 40
>1pq4_A Periplasmic binding protein component of AN ABC T uptake
transporter; ZNUA, loop, metal-binding, metal binding
protein; 1.90A {Synechocystis SP} SCOP: c.92.2.2 PDB:
2ov3_A 2ov1_A
Length = 291
Score = 35.1 bits (81), Expect = 0.073
Identities = 7/31 (22%), Positives = 9/31 (29%)
Query: 197 HRSYGRSHHHSHHHRSHSHHHHQSQSKHHHS 227
H H H H H H + K +
Sbjct: 96 HSHGEEEGHDDHSHDGHDHGSESEKEKAKGA 126
Score = 34.7 bits (80), Expect = 0.087
Identities = 5/23 (21%), Positives = 8/23 (34%)
Query: 204 HHHSHHHRSHSHHHHQSQSKHHH 226
HSH H + ++K
Sbjct: 105 DDHSHDGHDHGSESEKEKAKGAL 127
Score = 33.5 bits (77), Expect = 0.20
Identities = 5/45 (11%), Positives = 10/45 (22%)
Query: 182 GSSKDFVESSSSPPTHRSYGRSHHHSHHHRSHSHHHHQSQSKHHH 226
++ ++S+ H H H H
Sbjct: 74 NANMKLIDSAQGITPLEMEKHDHSHGEEEGHDDHSHDGHDHGSES 118
Score = 32.0 bits (73), Expect = 0.58
Identities = 4/31 (12%), Positives = 5/31 (16%)
Query: 197 HRSYGRSHHHSHHHRSHSHHHHQSQSKHHHS 227
G H H S +
Sbjct: 99 GEEEGHDDHSHDGHDHGSESEKEKAKGALMV 129
Score = 32.0 bits (73), Expect = 0.74
Identities = 6/30 (20%), Positives = 10/30 (33%)
Query: 197 HRSYGRSHHHSHHHRSHSHHHHQSQSKHHH 226
S+G H H H +S+ +
Sbjct: 95 DHSHGEEEGHDDHSHDGHDHGSESEKEKAK 124
Score = 30.8 bits (70), Expect = 1.7
Identities = 4/26 (15%), Positives = 8/26 (30%)
Query: 204 HHHSHHHRSHSHHHHQSQSKHHHSKP 229
H H H +++ + P
Sbjct: 107 HSHDGHDHGSESEKEKAKGALMVADP 132
>3u3p_A Tumor necrosis factor receptor superfamily member; trigger
apoptosis, apoptosis; 2.09A {Homo sapiens} PDB: 3u3q_A
3u3s_A 3u3t_A 3u3v_A 3qo4_A
Length = 313
Score = 34.5 bits (78), Expect = 0.11
Identities = 28/144 (19%), Positives = 37/144 (25%), Gaps = 6/144 (4%)
Query: 84 PSSVYTSSPPDTTTLSPIEAGGAPSPCHSLEVPPSPLLPDDNHPSPTSTSVHLVSSSNTD 143
S TS P T E S VP + N + V T
Sbjct: 175 SFSSSTSPSPGTAIFPRPEHMETHEVPSSTYVPKGMNSTESNSSASVRPKVLSSIQEGTV 234
Query: 144 -WSDVNPDSDGFVTPKPSGVPPSSSTTTFVKRLFSPPTPGSSKDFVESSSSPPTHRSYGR 202
+ + V + + R P E SS+P G
Sbjct: 235 PDNTSSARGKEDVNKTLPNLQVVNHQQGPHHRHILKLLPSMEATGGEKSSTPIKGPKRGH 294
Query: 203 SHHHSHHHRSHSHHHHQSQSKHHH 226
+ H H + HHH HHH
Sbjct: 295 PRQNLHKHFDINEHHH-----HHH 313
>2vu4_A Oxygen-evolving enhancer protein 2; kDa protein, transit peptide,
higher plants, photosynthes photosystem II, membrane,
thylakoid, chloroplast; 1.98A {Spinacia oleracea}
Length = 273
Score = 33.9 bits (76), Expect = 0.16
Identities = 26/137 (18%), Positives = 40/137 (29%), Gaps = 13/137 (9%)
Query: 205 HHSHHH---RSHSHHHHQSQSKH--HHSKPLSRTMFGPVSRLCLKVTSRTLSIQDKEEPN 259
HH HHH + HHH + S R + + ++ + N
Sbjct: 1 HHHHHHMASTACFLHHHAAISSPAAGRGSAAQRYQAVSIKPNQIVCKAQKQDDNEANVLN 60
Query: 260 VLLSRTMLGPVSRLCLKVTSRTLSIQTMSLSSSTQLDLTGVFSALPTPFREDEEIDFEKF 319
+SR RL L V ++ + + P E + + F
Sbjct: 61 SGVSR-------RLALTVLIGAAAVGSKVSPADAAYGEAANVFGKPKKNTEFMPYNGDGF 113
Query: 320 KFNV-SKWEKVPLKGSD 335
K V SKW K
Sbjct: 114 KLLVPSKWNPSKEKEFP 130
>3uau_A JLPA, surface-exposed lipoprotein; adhesin, bacterial cell surface,
cell adhesion; 2.70A {Campylobacter jejuni subsp}
Length = 379
Score = 33.6 bits (76), Expect = 0.25
Identities = 11/30 (36%), Positives = 12/30 (40%)
Query: 204 HHHSHHHRSHSHHHHQSQSKHHHSKPLSRT 233
HHH HHH HS H KH +
Sbjct: 3 HHHHHHHHHHSSGHIDDDDKHMCGNSIDEK 32
>4adz_A CSOR; transcription, copper sensor; 1.70A {Streptomyces lividans}
Length = 136
Score = 31.5 bits (71), Expect = 0.40
Identities = 12/62 (19%), Positives = 23/62 (37%), Gaps = 7/62 (11%)
Query: 165 SSSTTTFVKRLFSPPTPGSSKDFVESSSSPPTHRSYGRSHHHSHHHRSHSHHHHQSQSKH 224
S TTT S P+P V+ + + ++ H H +H+ +++H
Sbjct: 2 SHMTTTEAGA--SAPSPA-----VDGAVNQTARQAEADGTDIVTDHDRGVHGYHKQKAEH 54
Query: 225 HH 226
Sbjct: 55 LK 56
Score = 30.3 bits (68), Expect = 1.2
Identities = 7/45 (15%), Positives = 14/45 (31%)
Query: 182 GSSKDFVESSSSPPTHRSYGRSHHHSHHHRSHSHHHHQSQSKHHH 226
GS E+ +S P+ G + + + + H
Sbjct: 1 GSHMTTTEAGASAPSPAVDGAVNQTARQAEADGTDIVTDHDRGVH 45
Score = 28.8 bits (64), Expect = 4.0
Identities = 5/43 (11%), Positives = 8/43 (18%)
Query: 190 SSSSPPTHRSYGRSHHHSHHHRSHSHHHHQSQSKHHHSKPLSR 232
S + R H ++ L R
Sbjct: 15 SPAVDGAVNQTARQAEADGTDIVTDHDRGVHGYHKQKAEHLKR 57
>2oxa_A Extracellular serine protease; kexin, hydrolase; 1.65A {Aeromonas
sobria} PDB: 3hjr_A
Length = 600
Score = 31.8 bits (71), Expect = 1.0
Identities = 16/82 (19%), Positives = 26/82 (31%), Gaps = 2/82 (2%)
Query: 21 SSNLYTSTSSGNVFTSSSIGQSNFTP--SSSGSNVYTSNPSGTSSVYTTISSSATNSVYT 78
+SNL S S+ S++ SS GSN++ S G T +
Sbjct: 243 NSNLDPSNSNFWNLVVSALNADGVRSSYSSVGSNIFLSATGGEYGTDTPAMVTTDLPGCD 302
Query: 79 ISSTAPSSVYTSSPPDTTTLSP 100
+ T+ + L
Sbjct: 303 MGYNRTDDPSTNRLHGNSQLDA 324
>3oka_C N-terminal His-affinity TAG; GT-B fold, alpha-mannosyltransferase,
GDP-MAN binding, trans; HET: GDD; 2.20A {Escherichia
coli}
Length = 26
Score = 27.8 bits (61), Expect = 1.0
Identities = 9/14 (64%), Positives = 9/14 (64%)
Query: 204 HHHSHHHRSHSHHH 217
HHH HHH HS H
Sbjct: 3 HHHHHHHHHHSSGH 16
Score = 27.4 bits (60), Expect = 1.2
Identities = 9/15 (60%), Positives = 9/15 (60%)
Query: 201 GRSHHHSHHHRSHSH 215
G HHH HHH S H
Sbjct: 2 GHHHHHHHHHHSSGH 16
Score = 26.6 bits (58), Expect = 2.8
Identities = 10/16 (62%), Positives = 10/16 (62%), Gaps = 4/16 (25%)
Query: 205 HHSHHHRSHSHHHHQS 220
HH HHH HHHH S
Sbjct: 3 HHHHHH----HHHHSS 14
Score = 25.5 bits (55), Expect = 6.5
Identities = 8/19 (42%), Positives = 9/19 (47%)
Query: 208 HHHRSHSHHHHQSQSKHHH 226
HHH H HHH + H
Sbjct: 3 HHHHHHHHHHSSGHIEGRH 21
>3odm_A Pepcase, PEPC, phosphoenolpyruvate carboxylase; beta-barrel, lyase;
2.95A {Clostridium perfringens}
Length = 560
Score = 31.2 bits (70), Expect = 1.4
Identities = 12/31 (38%), Positives = 14/31 (45%), Gaps = 3/31 (9%)
Query: 204 HHHSHHHRSHSHHHHQSQSKHHHSKPLSRTM 234
HHH HHH HS H KH + +M
Sbjct: 3 HHHHHHHHHHSSGHIDDDDKHMK---IPCSM 30
>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid
cyclase fold, DDXXXXD motif, NDXXSXXXE MOT
methylisoborneol biosynthesis; HET: GST; 1.80A
{Streptomyces coelicolor} PDB: 3v1x_A*
Length = 433
Score = 31.3 bits (70), Expect = 1.4
Identities = 12/104 (11%), Positives = 23/104 (22%)
Query: 92 PPDTTTLSPIEAGGAPSPCHSLEVPPSPLLPDDNHPSPTSTSVHLVSSSNTDWSDVNPDS 151
+ S + + L P P P ++ N +
Sbjct: 11 SSGLVPRGSHMVIPSASVTSAASDFLAALHPPVTVPDPAPPPPPAPAAGNPPDTVTGDSV 70
Query: 152 DGFVTPKPSGVPPSSSTTTFVKRLFSPPTPGSSKDFVESSSSPP 195
+ P+G +S P +S + P
Sbjct: 71 LQRILRGPTGPGTTSLAPAVRYGRQPGPEAPASAPPAAGRAVPG 114
Score = 29.3 bits (65), Expect = 5.0
Identities = 20/123 (16%), Positives = 32/123 (26%), Gaps = 4/123 (3%)
Query: 60 GTSSVYTTISSSATNSVYTISSTAPSSVYTSSPPDTTTLSPIEAGGAPSPCHSLEVPPSP 119
G+S + SS + + S +S P P P P+
Sbjct: 2 GSSHHHHHHSSGLVPRGSHMVIPSASVTSAASDFLAALHPP---VTVPDPAPPPPPAPAA 58
Query: 120 LLPDDNHPSPTSTSVHLVSSSNTDWSDVNPDSDGFVTPKPSG-VPPSSSTTTFVKRLFSP 178
P D + L + + + P P P + V L+
Sbjct: 59 GNPPDTVTGDSVLQRILRGPTGPGTTSLAPAVRYGRQPGPEAPASAPPAAGRAVPGLYHH 118
Query: 179 PTP 181
P P
Sbjct: 119 PVP 121
>3mbg_A FAD-linked sulfhydryl oxidase ALR; flavin, flavoprotein, GFER; HET:
FAD; 1.85A {Homo sapiens} PDB: 3r7c_A*
Length = 139
Score = 29.7 bits (66), Expect = 1.7
Identities = 15/74 (20%), Positives = 22/74 (29%), Gaps = 4/74 (5%)
Query: 201 GRSHHHSHHHRSHSHHHHQSQSKHHHSKPLSRTMFGPVSRLCLKVTSRTLSIQDKEEPNV 260
G SHHH HH + + +K P R G TL+ + P
Sbjct: 2 GGSHHHHHHGMASMRTQQKRDTKFREDCPPDREELGR----HSWAVLHTLAAYYPDLPTP 57
Query: 261 LLSRTMLGPVSRLC 274
+ M +
Sbjct: 58 EQQQDMAQFIHLFS 71
>4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase;
BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A
{Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A*
Length = 831
Score = 31.0 bits (70), Expect = 1.7
Identities = 9/34 (26%), Positives = 10/34 (29%)
Query: 201 GRSHHHSHHHRSHSHHHHQSQSKHHHSKPLSRTM 234
G SHHH HH +S L
Sbjct: 1 GSSHHHHHHSSGLVPRGSHMKSTSVSPFHLPLNH 34
>3tla_A MCCF; serine protease, hydrolase; 1.20A {Escherichia coli} PDB:
3tle_A* 3tlg_A 3tlb_A* 3tlc_A* 3tlz_A* 3tly_A
Length = 371
Score = 30.6 bits (69), Expect = 1.9
Identities = 13/37 (35%), Positives = 14/37 (37%)
Query: 201 GRSHHHSHHHRSHSHHHHQSQSKHHHSKPLSRTMFGP 237
G HHH HHH HS H KH S +
Sbjct: 2 GHHHHHHHHHHHHSSGHIDDDDKHMLEMIQSHPLLAA 38
>3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG,
PSI-biology, structural genomics, midwest center for S
genomics, transferase; 1.90A {Helicobacter pylori}
Length = 74
Score = 28.1 bits (63), Expect = 1.9
Identities = 10/43 (23%), Positives = 18/43 (41%)
Query: 387 VWVKWFGMSNEPLSEVEPATLKSLSQGLEAHHRSRKKLQGLPV 429
V V++FG E ++ LK L L+ ++ L +
Sbjct: 3 VEVRFFGPIKEENFFIKANDLKELRAILQEKEGLKEWLGVCAI 45
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets,
alpha helices, AMY amyloidosis, blood coagulation,
disease mutation, glycoprot phosphoprotein; HET: NAG NDG
BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A*
2a45_G*
Length = 562
Score = 31.0 bits (69), Expect = 2.0
Identities = 29/194 (14%), Positives = 51/194 (26%), Gaps = 12/194 (6%)
Query: 14 TPSTSSLSSNLYTSTSSGNVFTSSSIGQSNFTPSSSGSNVYTSNPSGTSSVYTTISSSAT 73
+ + S + + S +SG+ S G N S +G S + +S ++
Sbjct: 262 SETESPRNPSSAGSWNSGSS-GPGSTGNRNPGSSGTGGTATWKPGSSGPGSTGSWNSGSS 320
Query: 74 NSVYTISSTAPSSVYTSSPPDTTTLSPIEAGGAPSPCHSLEVPPSPLLPDDNHPSPTSTS 133
+ T + S S+ S + G + S+ + P S
Sbjct: 321 GTGSTGNQNPGSPRPGSTGTWNPGSSERGSAGHWTSESSVSGSTGQWHSESGSFRPDSPG 380
Query: 134 VHLVSSSNTDWSDVNPDSDGFVTPKPSGVPPSSSTTTFVKRLFSPPTPGSSKDFVESSSS 193
+N DW S G T V T K+
Sbjct: 381 SGNARPNNPDWGTFEEVS----GNVSPGTRREYHTEKLV-------TSKGDKELRTGKEK 429
Query: 194 PPTHRSYGRSHHHS 207
+ + S
Sbjct: 430 VTSGSTTTTRRSCS 443
Score = 29.8 bits (66), Expect = 3.7
Identities = 19/170 (11%), Positives = 42/170 (24%), Gaps = 22/170 (12%)
Query: 15 PSTSSLSSNLYTSTSSGNVFTSSSIGQSNFTPSSSGSNVYTSNPSGTSSVYTTISSSATN 74
+ ++S + + TS + S T+ S T + +
Sbjct: 396 EVSGNVSPGTRREYHTEKLVTSKGDKELRTGKEKVTSGSTTTTRRSCSKT-VTKTVIGPD 454
Query: 75 SVYTISSTAPSSVYTSSPPDTTTLSPIEAGGAPSPCHSLEVPPSPLLPDDNHPSPTSTSV 134
++ +S S P+ L + G PD+ T+++
Sbjct: 455 GHKEVTKEVVTSEDGSDCPEAMDLGTLSGIGTLDGFRHRH-------PDEAAFFDTASTG 507
Query: 135 HLVSS--------------SNTDWSDVNPDSDGFVTPKPSGVPPSSSTTT 170
S S + ++ + P S +
Sbjct: 508 KTFPGFFSPMLGEFVSETESRGSESGIFTNTKESSSHHPGIAEFPSRGKS 557
>2fgg_A Hypothetical protein RV2632C/MT2708; TB target, structural
genomics, PSI, protein struct initiative, TB structural
genomics consortium; 2.30A {Mycobacterium tuberculosis}
SCOP: d.50.5.1
Length = 101
Score = 29.0 bits (65), Expect = 2.0
Identities = 10/20 (50%), Positives = 11/20 (55%), Gaps = 2/20 (10%)
Query: 201 GRSHHHSH--HHRSHSHHHH 218
+H HHRSH HHHH
Sbjct: 82 ASTHQPVTGLHHRSHHHHHH 101
Score = 27.1 bits (60), Expect = 8.2
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 188 VESSSSPPTHRSYGRSHHHSHH 209
+E+S+ P + RSHHH HH
Sbjct: 80 IEASTHQPVTGLHHRSHHHHHH 101
>1jid_A Signal recognition particle 19 kDa protein; signal recognition
particle (SRP), protein-RNA complex, GGAG tetraloop,
signaling protein/RNA complex; HET: 5BU A23; 1.80A {Homo
sapiens} SCOP: d.201.1.1 PDB: 3ktv_B* 1mfq_B* 1ry1_B*
2go5_B 2j37_B
Length = 128
Score = 29.5 bits (66), Expect = 2.0
Identities = 9/62 (14%), Positives = 21/62 (33%), Gaps = 7/62 (11%)
Query: 368 KGYPSWPGKLISPAPTQGRVWVKWFGMSNEPLSEVEP---ATLKSLSQGLEAHHRSRKKL 424
K Y + +GRV V+ P + + ++ + ++R +L
Sbjct: 66 KMYSREWNR---DVQYRGRVRVQLKQEDGSLCLVQFPSRKSVMLYAAEMI-PKLKTRTQL 121
Query: 425 QG 426
+
Sbjct: 122 EH 123
>2wxy_C Angiotensinogen, serpin A8; glycoprotein, hypertension,
vasoconstrictor, renin, serpins, vasoactive, hormone;
2.10A {Mus musculus} PDB: 2wxx_A 2wy0_C 2wxz_A 2wxz_C
2wy1_A
Length = 453
Score = 30.4 bits (69), Expect = 2.5
Identities = 8/68 (11%), Positives = 18/68 (26%)
Query: 76 VYTISSTAPSSVYTSSPPDTTTLSPIEAGGAPSPCHSLEVPPSPLLPDDNHPSPTSTSVH 135
+ S+ A + +T P+ SP + + +L +
Sbjct: 12 YHNKSTCAQLENPSVETLPESTFEPVPIQAKTSPVNEKTLHDQLVLAAEKLEDEDRKRAA 71
Query: 136 LVSSSNTD 143
V+
Sbjct: 72 QVAMITNF 79
>3b9f_I Protein C inhibitor; michaelis complex, acute phase, blood
coagulation, cleavage of basic residues, disease
mutation; HET: NAG FUC SGN IDS; 1.60A {Homo sapiens}
PDB: 2ol2_A*
Length = 395
Score = 30.3 bits (69), Expect = 2.5
Identities = 18/69 (26%), Positives = 24/69 (34%), Gaps = 12/69 (17%)
Query: 204 HHHSHHHRSHSHHHHQSQSKHH-HSKPLSRTMFGPVSRLCLKVTSRTLSIQDKEEPNVLL 262
HHH HHH HS H KH + + + R L+ + N+
Sbjct: 3 HHHHHHHHHHSSGHIDDDDKHMVGATVAPSS----RRDFTFDL-YRALASAAPSQ-NIFF 56
Query: 263 SRTMLGPVS 271
S PVS
Sbjct: 57 S-----PVS 60
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 30.5 bits (69), Expect = 2.6
Identities = 6/31 (19%), Positives = 11/31 (35%)
Query: 332 KGSDSDHSADSDDDSAVATTTKLLGLAEGDL 362
DSD A + L+G+ ++
Sbjct: 341 ASRDSDSCAIPPKHDPLTIFCDLMGVDYEEM 371
>2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG,
short-chain alcohol reductase, fatty acid biosynthesis,
apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2
Length = 285
Score = 29.8 bits (68), Expect = 2.8
Identities = 11/37 (29%), Positives = 12/37 (32%), Gaps = 5/37 (13%)
Query: 204 HHHSHHHRSHSHHHHQSQSKHHHSKPLS-----RTMF 235
HHH HHH S H K LS +
Sbjct: 4 HHHHHHHHHSSGHIEGRHMKLEFMNLLSENKKENYYY 40
>2qy1_A Pectate lyase II; GAG lyase; 1.90A {Xanthomonas campestris PV} PDB:
2qxz_A 2qx3_A
Length = 330
Score = 30.1 bits (67), Expect = 2.9
Identities = 11/72 (15%), Positives = 24/72 (33%), Gaps = 2/72 (2%)
Query: 29 SSGNVFTSSSIGQSNFTPSSSGSNVYTSNPSGTSSVYTTISSSATNSVYTISSTAPSSVY 88
N F + ++ S G +N G+ + T + ++ + V+
Sbjct: 241 IESNYFENIKNPVTSRDSSEIGYWDLINNYVGSGITWGT--PDGSKPYANATNWISTKVF 298
Query: 89 TSSPPDTTTLSP 100
S T++P
Sbjct: 299 PESLGYIYTVTP 310
>2prs_A High-affinity zinc uptake system protein ZNUA; protein consists of
two (beta/ALFA)4 domains, metal transport; 1.70A
{Escherichia coli} PDB: 2osv_A 2ps0_A 2ps3_A 2ps9_A
2ogw_A 2xy4_A* 2xqv_A* 2xh8_A
Length = 284
Score = 30.0 bits (68), Expect = 2.9
Identities = 8/57 (14%), Positives = 13/57 (22%)
Query: 170 TFVKRLFSPPTPGSSKDFVESSSSPPTHRSYGRSHHHSHHHRSHSHHHHQSQSKHHH 226
F+++ S + P H H S H + H
Sbjct: 61 AFMQKPVSKLPGAKQVTIAQLEDVKPLLMKSIHGDDDDHDHAEKSDEDHHHGDFNMH 117
Score = 28.9 bits (65), Expect = 6.8
Identities = 4/24 (16%), Positives = 5/24 (20%)
Query: 204 HHHSHHHRSHSHHHHQSQSKHHHS 227
H H + HH
Sbjct: 90 KSIHGDDDDHDHAEKSDEDHHHGD 113
>2h4p_A MENT, heterochromatin-associated protein MENT; serine protease
inhibitor, serpin, hydrolase inhibitor; 1.70A {Gallus
gallus} PDB: 2h4q_A
Length = 394
Score = 30.0 bits (68), Expect = 3.2
Identities = 15/71 (21%), Positives = 21/71 (29%), Gaps = 13/71 (18%)
Query: 201 GRSHHHSHHHRSHSHHHHQSQSKHHHSKPLSRTMFGPVSRLCLKVTSRTLSIQDKEEPNV 260
G SHHH HH S F L L+ ++++ N+
Sbjct: 2 GSSHHHHHHSSGLVPRGSHELEISMEQVSASIGNFT--VDLF-----NKLNETNRDK-NI 53
Query: 261 LLSRTMLGPVS 271
S P S
Sbjct: 54 FFS-----PWS 59
>1i5p_A Pesticidial crystal protein CRY2AA; helical bundle, beta prism,
lectin-like beta sandwich, jelly roll, toxin; 2.20A
{Bacillus thuringiensis serovarkurstaki} SCOP: b.18.1.3
b.77.2.1 f.1.3.1
Length = 633
Score = 30.3 bits (67), Expect = 3.4
Identities = 10/66 (15%), Positives = 23/66 (34%), Gaps = 4/66 (6%)
Query: 25 YTSTSSGNVFTS---SSIGQSNFTPSSSGSNVYTSNPS-GTSSVYTTISSSATNSVYTIS 80
+S + + + SN +++ V + ++ ++S TN I+
Sbjct: 549 VSSIGNSTIRVTINGRVYTVSNVNTTTNNDGVNDNGARFSDINIGNIVASDNTNVTLDIN 608
Query: 81 STAPSS 86
T S
Sbjct: 609 VTLNSG 614
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein;
2.50A {Mus musculus} SCOP: h.4.16.1
Length = 96
Score = 28.1 bits (62), Expect = 3.4
Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 10/60 (16%)
Query: 201 GRSHHHSHHHRS-----HSHHHHQSQSKHHHSKPLSRTMFGPVSRLCLKVTSRTLSIQDK 255
G SHHH HHH S SH + H + ++ T +RLC +V ++++
Sbjct: 1 GSSHHH-HHHSSGLVPRGSHMFTSANCSHQVQQEMATTF----ARLCQQVDMTQKHLEEE 55
>3nwa_A GB, GB-1, GB1, envelope glycoprotein B; coiled-coil, membrane
fusion, viral P glycoprotein B, HSV-1, membrane; HET:
NAG; 2.26A {Human herpesvirus 1} PDB: 3nwf_A* 3nw8_A*
3nwd_A*
Length = 703
Score = 29.9 bits (67), Expect = 4.1
Identities = 13/112 (11%), Positives = 27/112 (24%), Gaps = 5/112 (4%)
Query: 84 PSSVYTSSPPDTTTLSPIEAGGAPSPCHSLEVPPSPLLPDDNHPSPTSTSVHLVSSSNTD 143
P++ + P + GG +P P P +
Sbjct: 2 PAAPTSPGTPGVAAATQAANGGPATPAPPALGAAPTGDPK---PKKNKKPKNPTPPRPAG 58
Query: 144 WSDVNPDSDGFVTPKPSGVPPSSSTTTFVKRLFSPPTPGSSKDFVESSSSPP 195
+ + + ++ F + PPT + F + P
Sbjct: 59 DNATVAAGHATLREHLRDIKAENTDANF--YVCPPPTGATVVQFEQPRRCPT 108
Score = 29.9 bits (67), Expect = 4.2
Identities = 24/138 (17%), Positives = 43/138 (31%), Gaps = 27/138 (19%)
Query: 56 SNPSGTSSVYTTISSSATNSVYTISSTAPSSVYTSSPPDTTTLSPIEAGGAPSPCHSLEV 115
+ P+ + ++ A N P+ T +PP G AP+
Sbjct: 3 AAPTSPGTPGVAAATQAAN-------GGPA---TPAPPAL--------GAAPTGDPK--- 41
Query: 116 PPSPLLPDDNHPSPTSTSVHLVSSSNTDWSDVNPDSDGFVTPKPSGVPPSSSTTTFVKRL 175
P P + P + V++ + + D T V P + T V+
Sbjct: 42 PKKNKKPKNPTPPRPAGDNATVAAGHATLREHLRDIKAENTDANFYVCPPPTGATVVQ-- 99
Query: 176 FSP----PTPGSSKDFVE 189
F PT +++ E
Sbjct: 100 FEQPRRCPTRPEGQNYTE 117
Score = 28.8 bits (64), Expect = 9.0
Identities = 9/73 (12%), Positives = 19/73 (26%), Gaps = 10/73 (13%)
Query: 156 TPKPSGVPPSSSTTTFVKRLFSPPTPGSSKDFVESSSSPPTHRSYGRSHHHSHHHRSHSH 215
+P GV ++ P TP + + PT + + +
Sbjct: 7 SPGTPGVAAATQAAN-----GGPATPAPP-----ALGAAPTGDPKPKKNKKPKNPTPPRP 56
Query: 216 HHHQSQSKHHHSK 228
+ H+
Sbjct: 57 AGDNATVAAGHAT 69
>1cwv_A Invasin; integrin-binding protein, INV gene, structural protein;
HET: CIT; 2.30A {Yersinia pseudotuberculosis} SCOP:
b.1.14.1 b.1.14.1 b.1.14.1 b.1.14.1 d.169.1.3
Length = 492
Score = 29.6 bits (65), Expect = 4.2
Identities = 23/189 (12%), Positives = 50/189 (26%), Gaps = 15/189 (7%)
Query: 3 QASPITIYVSQTPSTSSLSSNLYTSTSSGNVFTSSSIGQSNFTPSSSGSNVYT------- 55
+ S+ ++ T + + ++ + ++ ++ T
Sbjct: 78 TDGVTVVTAEVEGQRQSVDTHFVKGTIAADK-STLAAVPTSIIADGLMASTITLELKDTY 136
Query: 56 SNPSGTSSVYTTISSSATNSVYTISSTAPSSVYTSSPPDTTTLSPIEAGGAPSPCHSLEV 115
+P ++V + + + S+ TS+ T++ G A S
Sbjct: 137 GDPQAGANVAFDTTLGNMGVITDHNDGTYSAPLTSTTLGVATVTVKVDGAAFS------- 189
Query: 116 PPSPLLPDDNHPSPTSTSVHLVSSSNTDWSDVNPDSDGFVTPKPSGVPPSSSTTTFVKRL 175
PS + P P + S+ +D S P S
Sbjct: 190 VPSVTVNFTADPIPDAGRSSFTVSTPDILADGTMSSTLSFVPVDKNGHFISGMQGLSFTQ 249
Query: 176 FSPPTPGSS 184
P S
Sbjct: 250 NGVPVSISP 258
Score = 29.2 bits (64), Expect = 6.6
Identities = 18/180 (10%), Positives = 51/180 (28%), Gaps = 14/180 (7%)
Query: 2 IQASPITIYVSQTPSTSSL---SSNLYTST---SSGNVFTSSSIGQSNFTPSSSGSNVYT 55
+Q +T+ + + ++ T G + + +
Sbjct: 4 VQQPQLTLTAAVIGDGAPANGKTAITVEFTVADFEGKPLAGQEVVITTNNGALPNKITEK 63
Query: 56 SNPSGTSSVYTTISSSATNSVYTISSTA-----PSSVYTSSPPDTTTLSPIEAGGAPSPC 110
++ +G + + T + T+ V +++ + S + A
Sbjct: 64 TDANGVARIALT---NTTDGVTVVTAEVEGQRQSVDTHFVKGTIAADKSTLAAVPTSIIA 120
Query: 111 HSLEVPPSPLLPDDNHPSPTSTSVHLVSSSNTDWSDVNPDSDGFVTPKPSGVPPSSSTTT 170
L L D + P + + ++ + + +DG + + +T T
Sbjct: 121 DGLMASTITLELKDTYGDPQAGANVAFDTTLGNMGVITDHNDGTYSAPLTSTTLGVATVT 180
>3mpc_A FN3-like protein; fibronectin, FN(III), unknown function; 1.60A
{Clostridium thermocellum}
Length = 103
Score = 27.8 bits (62), Expect = 4.4
Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Query: 52 NVYTSNPSGTSSVYTTISSSATNSVYTISSTAPSSVYT 89
NV S SG YTTI+++ T++ YT + A + Y
Sbjct: 36 NVKRSTKSGGP--YTTIATNITSTNYTDTGVATGTKYY 71
>2ciu_A TIM21P, import inner membrane translocase subunit TIM21
mitochondrial; mitochondrial import, mitochondrion,
protein transport; 1.6A {Saccharomyces cerevisiae}
Length = 127
Score = 28.4 bits (63), Expect = 4.6
Identities = 10/67 (14%), Positives = 18/67 (26%), Gaps = 3/67 (4%)
Query: 161 GVPPSSSTTTF---VKRLFSPPTPGSSKDFVESSSSPPTHRSYGRSHHHSHHHRSHSHHH 217
G S T F V + S + + ++YG + R+
Sbjct: 1 GAMGSGDTQLFNRAVSMVEKNKDIRSLLQCDDGITGKERLKAYGELITNDKWTRNRPIVS 60
Query: 218 HQSQSKH 224
+ K
Sbjct: 61 TKKLDKE 67
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken,
molecular motor, ATPase, ELC, IQ motif, muscle protein,
ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1
c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Length = 795
Score = 29.5 bits (67), Expect = 5.0
Identities = 6/32 (18%), Positives = 11/32 (34%)
Query: 332 KGSDSDHSADSDDDSAVATTTKLLGLAEGDLV 363
DSD A + L+G+ ++
Sbjct: 341 ASRDSDSCAIPPKHDPLTIFCDLMGVDYEEMA 372
>4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA;
HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A*
Length = 437
Score = 29.3 bits (66), Expect = 5.0
Identities = 18/79 (22%), Positives = 30/79 (37%), Gaps = 10/79 (12%)
Query: 139 SSNTDWS--DVNPDSDGFVTPKPSGVPPSSSTTTFVKRLF-----SPPTPGSSKDFVESS 191
SS TD S DV+ D + PP+ + + F + S + + +
Sbjct: 362 SSPTDTSNFDVDDDCL---KNSETMPPPTHTAFSGHHLPFVGFTYTSSCVLSDRSCLRVT 418
Query: 192 SSPPTHRSYGRSHHHSHHH 210
+ P + + HH HHH
Sbjct: 419 AGPTSAENLYFQSHHHHHH 437
>3g80_A Protein B2; RNA-binding, viral protein, suppressor of RNAI, RNA
interference; 2.50A {Nodamura virus}
Length = 97
Score = 27.5 bits (60), Expect = 5.2
Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 5/59 (8%)
Query: 204 HHHSHHHRSHSHHHHQSQSKHHHSKPLSRTMFGPVSRLC--LKVTSRTLSIQDKEEPNV 260
HHH HHH + + + + L +++ + +L + T +TL I D PNV
Sbjct: 3 HHHHHHHAMENLYFQGHMTNMSCAYELIKSLPAKLEQLAQETQATIQTLMIAD---PNV 58
>3ry3_A Putative solute-binding protein; structural genomics, IDP00509,
center for structural genomic infectious diseases,
csgid, transport prote; 2.43A {Yersinia pestis}
Length = 528
Score = 29.3 bits (66), Expect = 5.4
Identities = 16/64 (25%), Positives = 29/64 (45%), Gaps = 16/64 (25%)
Query: 730 EKIKQVLTEAGFLVP--------GVRAAMELYGYYGGRSRRPLPAALKPGGAEKIKQVLT 781
+K KQ+L +AG+ + G+ A + L+ G +RR L A+ ++ +L
Sbjct: 334 DKAKQILEQAGWQLNSQGTREKNGLPAKITLWYTSGDTTRRDL--------AQALRSMLK 385
Query: 782 EAGF 785
G
Sbjct: 386 PIGI 389
>1i1c_A IGG2A, IG gamma-2A chain C region; FC, immune system; HET: NAG FUL
BMA MAN FUC; 2.70A {Rattus norvegicus} SCOP: b.1.1.2
b.1.1.2 PDB: 1i1a_D*
Length = 239
Score = 28.7 bits (64), Expect = 5.8
Identities = 25/231 (10%), Positives = 54/231 (23%), Gaps = 39/231 (16%)
Query: 8 TIYVSQTPSTSSLSSNLYTSTSSGNVFTSSSIGQSNFTPSSSGSNVYTSNPSGTSSV--Y 65
+ TP + + ++ + S + ++ ++ + T
Sbjct: 28 VLGGGLTPKVTCVVVDISQNDPEVRF----SWFIDDVEVHTAQTHAPEKQSNSTLRSVSE 83
Query: 66 TTISSSATNS--VYTISSTAPSSVYTSSPPDTTTLSPIEAGGAPSPCHSLEVPPSPLLPD 123
I + + + + P ++S E P PP +
Sbjct: 84 LPIVERDWLNGKTFKCKVNSGAFPA----PIEKSISKPEGTPRG-PQVYTMAPPKEEMTQ 138
Query: 124 D--------NHPSPTSTSVHLVSSSNTDWSDVNPDSDGFVTPKPSGVPPSSSTTTFVKRL 175
P W + + P+ + + F+
Sbjct: 139 SQVSITCMVKGFYPPDIYTE--------WKMNGQPQENYKNTPPT---MDTDGSYFLYSK 187
Query: 176 FSPPTPGSSKDFV-------ESSSSPPTHRSYGRSHHHSHHHRSHSHHHHQ 219
+ + E + T +S S R SHHHH
Sbjct: 188 LNVKKETWQQGNTFTCSVLHEGLENEHTEKSLSHSPGKGIEGRGSSHHHHH 238
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich
RE receptor-like kinases, leucine-rich repeat; HET: NAG
BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A*
3rj0_A*
Length = 768
Score = 29.5 bits (67), Expect = 5.8
Identities = 9/16 (56%), Positives = 12/16 (75%)
Query: 203 SHHHSHHHRSHSHHHH 218
+ ++HH RSH HHHH
Sbjct: 753 ADGYAHHQRSHHHHHH 768
>1hxm_B Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system;
3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2
Length = 242
Score = 28.8 bits (65), Expect = 5.9
Identities = 6/73 (8%), Positives = 21/73 (28%), Gaps = 13/73 (17%)
Query: 36 SSSIGQSNFTPSSSGSNVYTSNPSGTSSVYTTISSSATNSVYTISSTAPSS--------V 87
S+ + ++ +N + T+ + + + ++ +
Sbjct: 172 KSNTILGSQEGNTMKTNDTY-----MKFSWLTVPEKSLDKEHRCIVRHENNKNGVDQEII 226
Query: 88 YTSSPPDTTTLSP 100
+ D T+ P
Sbjct: 227 FPPIKTDVITMDP 239
>2yjp_A Putative ABC transporter, periplasmic binding Pro amino acid;
transport protein, solute-binding protein; 2.26A
{Neisseria gonorrhoeae}
Length = 291
Score = 28.9 bits (65), Expect = 6.4
Identities = 9/22 (40%), Positives = 10/22 (45%)
Query: 209 HHRSHSHHHHQSQSKHHHSKPL 230
HH H HHHH S K +
Sbjct: 3 HHHHHHHHHHSSGHIDDDDKHM 24
>2k8i_A SLYD, peptidyl-prolyl CIS-trans isomerase; ppiase, chaperone,
rotamase; NMR {Escherichia coli}
Length = 171
Score = 28.4 bits (64), Expect = 6.7
Identities = 10/21 (47%), Positives = 11/21 (52%)
Query: 206 HSHHHRSHSHHHHQSQSKHHH 226
H H H +H HHH HHH
Sbjct: 149 HGHVHGAHDHHHDHDHDHHHH 169
Score = 28.0 bits (63), Expect = 7.9
Identities = 9/15 (60%), Positives = 9/15 (60%)
Query: 203 SHHHSHHHRSHSHHH 217
HHH H H H HHH
Sbjct: 157 DHHHDHDHDHHHHHH 171
>2ddx_A Beta-1,3-xylanase; glycoside hydrolase, TIM barrel, hydrola; 0.86A
{Vibrio SP}
Length = 333
Score = 29.0 bits (64), Expect = 7.1
Identities = 11/69 (15%), Positives = 23/69 (33%), Gaps = 8/69 (11%)
Query: 141 NTDWSDVNPDSDGFVTPKPSGVPPSSSTTTFVKRLFSPPTPGSSKDFVESSSSPPTHRSY 200
++ W S V ++ + ++ + ++ S + Y
Sbjct: 273 DSQWR--WAAPYNEGYWGDSRVQANALIKSNWQQEIAKGQ------YINHSETLFETLGY 324
Query: 201 GRSHHHSHH 209
G +HHH HH
Sbjct: 325 GSTHHHHHH 333
>1d1d_A Protein (capsid protein); two independent domains helical bundles,
virus/viral protein; NMR {Rous sarcoma virus} SCOP:
a.28.3.1 a.73.1.1
Length = 262
Score = 28.6 bits (63), Expect = 7.7
Identities = 11/31 (35%), Positives = 14/31 (45%)
Query: 208 HHHRSHSHHHHQSQSKHHHSKPLSRTMFGPV 238
HHH H HHH + H+ P+ GP
Sbjct: 2 HHHHHHHHHHSSGHIEGRHNMPVVIKTEGPA 32
>4feg_A Pyruvate oxidase; carbanion, structure activity relationship,
oxidation-reduct umpolung, thiamine diphosphate,
reaction intermediate; HET: TDM FAD GOL; 1.09A
{Lactobacillus plantarum} PDB: 4fee_A* 1y9d_A* 2ez9_A*
2ez4_A* 2ez8_A* 2ezt_A* 2ezu_A* 1pow_A* 1pox_A*
Length = 603
Score = 28.7 bits (65), Expect = 8.7
Identities = 14/85 (16%), Positives = 27/85 (31%), Gaps = 9/85 (10%)
Query: 664 DLAKAGKWEEAMKLQH-RLVKPDVTVRNVLLMKEMGVPGVRA------AMELYGYYGGRS 716
L +E+A + V D + + + A Y +
Sbjct: 521 QLPDV--FEQAKAIAQHEPVLIDAVITGDRPLPAEKLRLDSAMSSAADIEAFKQRYEAQD 578
Query: 717 RRPLPAALKPGGAEKIKQVLTEAGF 741
+PL LK G + ++ + + GF
Sbjct: 579 LQPLSTYLKQFGLDDLQHQIGQGGF 603
>4dhd_A Polyprenyl synthetase; isoprenoid synthesis, isoprenoid diphosphate
synthase, trans; 1.65A {Pyrobaculum calidifontis}
Length = 358
Score = 28.5 bits (64), Expect = 10.0
Identities = 8/22 (36%), Positives = 13/22 (59%)
Query: 202 RSHHHSHHHRSHSHHHHQSQSK 223
R + + + +SH HHHH S +
Sbjct: 334 REYAENLYFQSHHHHHHWSHPQ 355
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.313 0.128 0.376
Gapped
Lambda K H
0.267 0.0799 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 11,858,886
Number of extensions: 737359
Number of successful extensions: 4458
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4092
Number of HSP's successfully gapped: 256
Length of query: 786
Length of database: 6,701,793
Length adjustment: 101
Effective length of query: 685
Effective length of database: 3,881,772
Effective search space: 2659013820
Effective search space used: 2659013820
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 61 (27.1 bits)