RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy11975
(786 letters)
>d1xkya1 c.1.10.1 (A:1-292) Dihydrodipicolinate synthase {Bacillus
anthracis [TaxId: 1392]}
Length = 292
Score = 112 bits (280), Expect = 5e-28
Identities = 65/217 (29%), Positives = 115/217 (52%), Gaps = 9/217 (4%)
Query: 523 HTTTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNT 582
T A+IDLT+KA + G +A +++ PYY K +++ +Y+HF ++A+++P+PV++YN
Sbjct: 81 SNNTHASIDLTKKATEVGVDAVMLVAPYYN--KPSQEGMYQHFKAIAESTPLPVMLYNVP 138
Query: 583 FVTNIDISVDTLVKLAHHENIRGVKDTDNIKLANMA-NQTKDLNFSVFAGSAGYLLSGLL 641
+ + ISVDT+V+L+ ENI +KD L + +F+V++G G L +
Sbjct: 139 GRSIVQISVDTVVRLSEIENIVAIKDAGGDVLTMTEIIEKTADDFAVYSGDDGLTLPAMA 198
Query: 642 VGCAGGINALSAVLGGPICELYDLAKAGKWEEAMKLQHRLVKPDVTVRNVLLMKEMGVPG 701
VG G ++ S V+G + E+ +AG++++A KL LV+ L
Sbjct: 199 VGAKGIVSVASHVIGNEMQEMIAAFQAGEFKKAQKLHQLLVRV-----TDSLFMAPSPTP 253
Query: 702 VRAAMELYGYYGGRSRRPLPAALKPGGAEKIKQVLTE 738
V+ A+++ G G R PL L ++ V+
Sbjct: 254 VKTALQMVGLDVGSVRLPLL-PLTEEERVTLQSVMQS 289
Score = 40.2 bits (93), Expect = 7e-04
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 295 LDLTGVFSALPTPFREDEEIDFEKFKFNV 323
+D + +A+ TPF + IDF K V
Sbjct: 2 IDFGTIATAMVTPFDINGNIDFAKTTKLV 30
>d2a6na1 c.1.10.1 (A:1-292) Dihydrodipicolinate synthase
{Escherichia coli [TaxId: 562]}
Length = 292
Score = 108 bits (269), Expect = 2e-26
Identities = 56/232 (24%), Positives = 104/232 (44%), Gaps = 10/232 (4%)
Query: 513 WQADLLKPQKHTTTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNS 572
+ ++ T I LTQ+ +G L + PYY + +++ +Y+HF ++A+++
Sbjct: 69 GRIPVIAGTGANATAEAISLTQRFNDSGIVGCLTVTPYYN--RPSQEGLYQHFKAIAEHT 126
Query: 573 PIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKDT-DNIKLANMANQTKDLNFSVFAG 631
+P I+YN T D+ +T+ +LA +NI G+K+ N+ N + +F + +G
Sbjct: 127 DLPQILYNVPSATGCDLLPETVGRLAKVKNIIGIKEATGNLTRVNQIKELVSDDFVLLSG 186
Query: 632 SAGYLLSGLLVGCAGGINALSAVLGGPICELYDLAKAGKWEEAMKLQHRLVKPDVTVRNV 691
L + +G G I+ + V + ++ LA G + EA + RL+ +
Sbjct: 187 DDASALDFMQLGGHGVISVTANVAARDMAQMCKLAAEGHFAEARVINQRLMP-----LHN 241
Query: 692 LLMKEMGVPGVRAAMELYGYY-GGRSRRPLPAALKPGGAEKIKQVLTEAGFL 742
L E V+ A + G R P+ + G E ++ L AG L
Sbjct: 242 KLFVEPNPIPVKWACKELGLVATDTLRLPMT-PITDSGRETVRAALKHAGLL 292
Score = 41.8 bits (97), Expect = 2e-04
Identities = 23/150 (15%), Positives = 36/150 (24%), Gaps = 22/150 (14%)
Query: 297 LTGVFSALPTPFREDEEIDFEKFKFNVSKWEKVPLKGSDSDHSADSDDDS-AVATTT--- 352
TG A+ TP E + K + D+ S + TT
Sbjct: 2 FTGSIVAIVTPMDEKGNVCRASLKKLI-------------DYHVASGTSAIVSVGTTGES 48
Query: 353 KLLGLAEGDLVWGSVKGYPSWPGKLISPAPTQGRVWVKWFGMSNEPL-----SEVEPATL 407
L E V +I+ V P
Sbjct: 49 ATLNHDEHADVVMMTLDLADGRIPVIAGTGANATAEAISLTQRFNDSGIVGCLTVTPYYN 108
Query: 408 KSLSQGLEAHHRSRKKLQGLPVVAGQAHFA 437
+ +GL H ++ + LP + A
Sbjct: 109 RPSQEGLYQHFKAIAEHTDLPQILYNVPSA 138
>d1xxxa1 c.1.10.1 (A:5-300) Dihydrodipicolinate synthase
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 296
Score = 105 bits (263), Expect = 1e-25
Identities = 58/220 (26%), Positives = 96/220 (43%), Gaps = 9/220 (4%)
Query: 523 HTTTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNT 582
T +I L + A GA+ L++ PYY K + + HF +VAD + +P+++Y+
Sbjct: 85 TYDTAHSIRLAKACAAEGAHGLLVVTPYYS--KPPQRGLQAHFTAVADATELPMLLYDIP 142
Query: 583 FVTNIDISVDTLVKLAHHENIRGVKDTDNIKLANMANQTKDLNFSVFAGSAGYLLSGLLV 642
+ + I DT+ LA H NI GVKD L + A D + ++G L L +
Sbjct: 143 GRSAVPIEPDTIRALASHPNIVGVKD-AKADLHSGAQIMADTGLAYYSGDDALNLPWLAM 201
Query: 643 GCAGGINALSAVLGGPICELYDLAKAGKWEEAMKLQHRLVKPDVTVRNVLLMKEMGVPGV 702
G G I+ ++ + G + EL +G A K+ + + N + + GV
Sbjct: 202 GATGFISVIAHLAAGQLRELLSAFGSGDIATARKINIAVAP----LCN-AMSRLGGVTLS 256
Query: 703 RAAMELYGYYGGRSRRPLPAALKPGGAEKIKQVLTEAGFL 742
+A + L G G R P A P + + + A L
Sbjct: 257 KAGLRLQGIDVGDPRLPQV-AATPEQIDALAADMRAASVL 295
Score = 40.3 bits (93), Expect = 5e-04
Identities = 30/175 (17%), Positives = 50/175 (28%), Gaps = 20/175 (11%)
Query: 297 LTGVFSALPTPFREDEEIDFEKFKFNVSKWEKVPLKGSDSDHSADSDDDSAVATTT---K 353
L + +A+ TPF D +D + +G D V+ TT
Sbjct: 8 LGTLLTAMVTPFSGDGSLDTATAARLANHLVD---QGCDG---------LVVSGTTGESP 55
Query: 354 LLGLAEGDLVWGSVKGYPSWPGKLISPAPTQGRVWVKWFGMSNEPLSE-----VEPATLK 408
E + +V ++I+ A T + V P K
Sbjct: 56 TTTDGEKIELLRAVLEAVGDRARVIAGAGTYDTAHSIRLAKACAAEGAHGLLVVTPYYSK 115
Query: 409 SLSQGLEAHHRSRKKLQGLPVVAGQAHFAGAHPGPGVGQMMVSSVSFSHYFKAHS 463
+GL+AH + LP++ A P ++S K
Sbjct: 116 PPQRGLQAHFTAVADATELPMLLYDIPGRSAVPIEPDTIRALASHPNIVGVKDAK 170
>d1o5ka_ c.1.10.1 (A:) Dihydrodipicolinate synthase {Thermotoga
maritima [TaxId: 2336]}
Length = 295
Score = 100 bits (250), Expect = 6e-24
Identities = 56/225 (24%), Positives = 105/225 (46%), Gaps = 13/225 (5%)
Query: 523 HTTTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNT 582
+T T+ L ++A K GAN L++ PYY K T++ +Y+H+ +++ + + +++YN
Sbjct: 79 TNSTEKTLKLVKQAEKLGANGVLVVTPYYN--KPTQEGLYQHYKYISERTDLGIVVYNVP 136
Query: 583 FVTNIDISVDTLVKL-AHHENIRGVKDT----DNIKLANMANQTKDLNFSVFAGSAGYLL 637
T +++ +T ++ A +N+ G+K+ D I + +F V++G+
Sbjct: 137 GRTGVNVLPETAARIAADLKNVVGIKEANPDIDQIDRTVSLTKQARSDFMVWSGNDDRTF 196
Query: 638 SGLLVGCAGGINALSAVLGGPICELYDLAKAGKWEEAMKLQHRLVKPDVTVRNVLLMKEM 697
L G G I+ +S V + EL +G E++ ++ +L L E
Sbjct: 197 YLLCAGGDGVISVVSNVAPKQMVELCAEYFSGNLEKSREVHRKLRP-----LMKALFVET 251
Query: 698 GVPGVRAAMELYGYYGGRSRRPLPAALKPGGAEKIKQVLTEAGFL 742
V+AA+ L G+ R PL E ++ VL E+G L
Sbjct: 252 NPIPVKAALNLMGFIENELRLPLV-PASEKTVELLRNVLKESGLL 295
Score = 33.3 bits (75), Expect = 0.092
Identities = 9/23 (39%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
Query: 298 TGVFSALPTPFREDEEIDFEKFK 320
GV +A+ TPF ++ E+D E ++
Sbjct: 4 RGVGTAIVTPF-KNGELDLESYE 25
>d1f74a_ c.1.10.1 (A:) N-acetylneuraminate lyase {Haemophilus
influenzae [TaxId: 727]}
Length = 293
Score = 75.9 bits (185), Expect = 2e-15
Identities = 44/220 (20%), Positives = 95/220 (43%), Gaps = 9/220 (4%)
Query: 523 HTTTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNT 582
+ ++L + A + G + + P+Y+ K + I ++ ++ + +I+Y+
Sbjct: 82 SVNLKEAVELGKYATELGYDCLSAVTPFYY--KFSFPEIKHYYDTIIAETGSNMIVYSIP 139
Query: 583 FVTNIDISVDTLVKLAHHENIRGVKDTDNIKLANMANQTKDLNFSVFAGSAGYLLSGLLV 642
F+T +++ ++ +L + + GVK T + N ++AG +L +
Sbjct: 140 FLTGVNMGIEQFGELYKNPKVLGVKFTAGDFYLLERLKKAYPNHLIWAGFDEMMLPAASL 199
Query: 643 GCAGGINALSAVLGGPICELYDLAKAGKWEEAMKLQHRLVKPDVTVRNVLLMKEMGVPGV 702
G G I + V G ++++L KAGK +EA+++QH ++ +
Sbjct: 200 GVDGAIGSTFNVNGVRARQIFELTKAGKLKEALEIQHVTND-----LIEGILANGLYLTI 254
Query: 703 RAAMELYGYYGGRSRRPLPAALKPGGAEKIKQVLTEAGFL 742
+ ++L G G R P+ + K K + +A FL
Sbjct: 255 KELLKLEGVDAGYCREPMTSKATAEQVAKAKDL--KAKFL 292
Score = 42.0 bits (97), Expect = 2e-04
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 296 DLTGVFSALPTPFREDEEIDFEKFKFNV 323
DL G+FSAL F ED I+ + + +
Sbjct: 3 DLKGIFSALLVSFNEDGTINEKGLRQII 30
>d2nlua1 b.34.9.2 (A:1-100) Hepatoma-derived growth factor, HDGF
{Human (Homo sapiens) [TaxId: 9606]}
Length = 100
Score = 58.4 bits (141), Expect = 3e-11
Identities = 18/69 (26%), Positives = 29/69 (42%), Gaps = 7/69 (10%)
Query: 360 GDLVWGSVKGYPSWPGKLISPA-----PTQGRVWVKWFGMSNEPLSEVEPATLKSLSQGL 414
GDLV+ +KGYP WP ++ T + V +FG + + P L +
Sbjct: 13 GDLVFAKMKGYPHWPARIDEMPEAAVKSTANKYQVFFFGTHET--AFLGPKDLFPYEESK 70
Query: 415 EAHHRSRKK 423
E + K+
Sbjct: 71 EKFGKPNKR 79
>d1khca_ b.34.9.2 (A:) DNA methyltransferase DNMT3B {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 137
Score = 55.0 bits (132), Expect = 1e-09
Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 8/74 (10%)
Query: 356 GLAEGDLVWGSVKGYPSWPGKLISPAPTQ------GRVWVKWFGMSNEPLSEVEPATLKS 409
GDLVWG +KG+ WP ++S T G WV+WFG + SE+ L +
Sbjct: 8 EFGIGDLVWGKIKGFSWWPAMVVSWKATSKRQAMPGMRWVQWFG--DGKFSEISADKLVA 65
Query: 410 LSQGLEAHHRSRKK 423
L + + +
Sbjct: 66 LGLFSQHFNLATFN 79
>d2daqa1 b.34.9.2 (A:8-104) Histone-lysine N-methyltransferase NSD3
{Human (Homo sapiens) [TaxId: 9606]}
Length = 97
Score = 51.2 bits (122), Expect = 9e-09
Identities = 13/76 (17%), Positives = 27/76 (35%), Gaps = 12/76 (15%)
Query: 360 GDLVWGSVKGYPSWPGKLISP----------APTQGRVWVKWFGMSNEPLSEVEPATLKS 409
+VW + Y WP ++ +P G V +FG S++ V +
Sbjct: 5 KQIVWVKLGNYRWWPAEICNPRSVPLNIQGLKHDLGDFPVFFFG-SHD-YYWVHQGRVFP 62
Query: 410 LSQGLEAHHRSRKKLQ 425
+G ++ + +
Sbjct: 63 YVEGDKSFAEGQTSIN 78
>d1hl2a_ c.1.10.1 (A:) N-acetylneuraminate lyase {Escherichia coli
[TaxId: 562]}
Length = 295
Score = 43.5 bits (101), Expect = 5e-05
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 296 DLTGVFSALPTPFREDEEIDFEKFK 320
+L GV +AL TPF + + +D +
Sbjct: 2 NLRGVMAALLTPFDQQQALDKASLR 26
>d1h3za_ b.34.9.2 (A:) Hypothetical protein SPBC215.07c {Fission
yeast (Schizosaccharomyces pombe) [TaxId: 4896]}
Length = 108
Score = 40.4 bits (94), Expect = 9e-05
Identities = 15/81 (18%), Positives = 25/81 (30%), Gaps = 15/81 (18%)
Query: 360 GDLVWGSVKGYPSWPGKLISP------------APTQGRVWVKWFG---MSNEPLSEVEP 404
G V + G+P WP +++ V +F + P
Sbjct: 9 GMRVLTKMSGFPWWPSMVVTESKMTSVARKSKPKRAGTFYPVIFFPNKEYLWTGSDSLTP 68
Query: 405 ATLKSLSQGLEAHHRSRKKLQ 425
T +++SQ LE L
Sbjct: 69 LTSEAISQFLEKPKPKTASLI 89
>d1w3ia_ c.1.10.1 (A:) 2-keto-3-deoxy gluconate aldolase Eda
{Sulfolobus solfataricus [TaxId: 2287]}
Length = 293
Score = 38.9 bits (89), Expect = 0.002
Identities = 9/28 (32%), Positives = 14/28 (50%)
Query: 299 GVFSALPTPFREDEEIDFEKFKFNVSKW 326
+ + + TPF +D ID EK K +
Sbjct: 2 EIITPIITPFTKDNRIDKEKLKIHAENL 29
>d1ciya1 b.18.1.3 (A:462-609) delta-Endotoxin, C-terminal domain
{Bacillus thuringiensis, CRYIA (A) [TaxId: 1428]}
Length = 148
Score = 34.4 bits (79), Expect = 0.017
Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 3/65 (4%)
Query: 25 YTSTSSGNVFTS---SSIGQSNFTPSSSGSNVYTSNPSGTSSVYTTISSSATNSVYTISS 81
Y ST++ TS I Q NF+ + S + S T T + S +SV+T+S+
Sbjct: 67 YASTTNLQFHTSIDGRPINQGNFSATMSSGSNLQSGSFRTVGFTTPFNFSNGSSVFTLSA 126
Query: 82 TAPSS 86
+S
Sbjct: 127 HVFNS 131
>d1f89a_ d.160.1.1 (A:) hypothetical protein yl85 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 281
Score = 31.3 bits (69), Expect = 0.42
Identities = 10/67 (14%), Positives = 22/67 (32%)
Query: 514 QADLLKPQKHTTTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSP 573
Q P K + ++A K + L++ P F + D ++ + P
Sbjct: 16 QLSGSSPDKMANLQRAATFIERAMKEQPDTKLVVLPECFNSPYSTDQFRKYSEVINPKEP 75
Query: 574 IPVIIYN 580
+ +
Sbjct: 76 STSVQFL 82
>d1n7za_ b.127.1.1 (A:) Baseplate structural protein gp8
{Bacteriophage T4 [TaxId: 10665]}
Length = 328
Score = 30.4 bits (68), Expect = 0.72
Identities = 11/82 (13%), Positives = 25/82 (30%), Gaps = 2/82 (2%)
Query: 21 SSNLYTSTSSGNVFTS--SSIGQSNFTPSSSGSNVYTSNPSGTSSVYTTISSSATNSVYT 78
Y + + + N T S +G VY + + + S + +
Sbjct: 90 GDTRYPDPYTFRINDIVVCNSAPYNATESGAGWLVYRCLDVPDTGMCSIASLTDKDECLK 149
Query: 79 ISSTAPSSVYTSSPPDTTTLSP 100
+ S + +PP+ +
Sbjct: 150 LGGKWTPSARSMTPPEGRGDAE 171
>d1jdfa1 c.1.11.2 (A:138-446) D-glucarate dehydratase {Escherichia
coli [TaxId: 562]}
Length = 309
Score = 30.2 bits (67), Expect = 0.85
Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 7/61 (11%)
Query: 702 VRAAMELYGY---YGGRSRRPLPAALKPGGAEKIKQVLTEAGF----LVPGVRAAMELYG 754
R+ +E+ GY G R PLP +P + ++ E +V AA E YG
Sbjct: 4 QRSEVEMLGYLFFVGNRKATPLPYQSQPDDSCDWYRLRHEEAMTPDAVVRLAEAAYEKYG 63
Query: 755 Y 755
+
Sbjct: 64 F 64
>d1ctfa_ d.45.1.1 (A:) Ribosomal protein L7/12, C-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 68
Score = 27.7 bits (62), Expect = 0.92
Identities = 23/68 (33%), Positives = 28/68 (41%), Gaps = 18/68 (26%)
Query: 724 LKPGGAEK---IKQVLTEAGFLVPGVRAAMELYGYYGGRSRRPLPAALKPGG----AEKI 776
LK GA K IK V G + + +E PAALK G AE +
Sbjct: 6 LKAAGANKVAVIKAVRGATGLGLKEAKDLVE-----------SAPAALKEGVSKDDAEAL 54
Query: 777 KQVLTEAG 784
K+ L EAG
Sbjct: 55 KKALEEAG 62
Score = 27.7 bits (62), Expect = 0.92
Identities = 13/25 (52%), Positives = 15/25 (60%), Gaps = 4/25 (16%)
Query: 720 LPAALKPGG----AEKIKQVLTEAG 740
PAALK G AE +K+ L EAG
Sbjct: 38 APAALKEGVSKDDAEALKKALEEAG 62
>d1e5ba_ b.2.2.1 (A:) Endo-1,4-beta xylanase D, xylan binding
domain, XBD {Cellulomonas fimi [TaxId: 1708]}
Length = 87
Score = 27.8 bits (62), Expect = 1.5
Identities = 8/63 (12%), Positives = 24/63 (38%), Gaps = 5/63 (7%)
Query: 26 TSTSSGNVFTSSSIGQS-----NFTPSSSGSNVYTSNPSGTSSVYTTISSSATNSVYTIS 80
+ +S+ V + + Q+ N + SGS + ++ T+ + +++ +
Sbjct: 24 SGSSAWTVNLALNGSQTIQASWNANVTGSGSTRTVTPNGSGNTFGVTVMKNGSSTTPAAT 83
Query: 81 STA 83
Sbjct: 84 CAG 86
>d1dlca2 b.77.2.1 (A:290-499) delta-Endotoxin (insectocide), middle
domain {Bacillus thuringiensis tenebrionis, CRYIIIA
(BT13) [TaxId: 1444]}
Length = 210
Score = 29.2 bits (65), Expect = 1.6
Identities = 16/87 (18%), Positives = 25/87 (28%), Gaps = 10/87 (11%)
Query: 7 ITIYVSQTPSTSSLSSNLYTSTSSGNVFTSSSIGQSNFTPSSSGSNVYTSNPSGTSSVYT 66
I + P S Y S GN ++ SN +S +S P
Sbjct: 51 IQFHTRFQPGYYGNDSFNYWS---GNYVSTRPSIGSNDIITSPFYGNKSSEPVQNLEFN- 106
Query: 67 TISSSATNSVYTISSTAPSSVYTSSPP 93
VY + +V+ S+
Sbjct: 107 ------GEKVYRAVANTNLAVWPSAVY 127
>d1gyca3 b.6.1.3 (A:301-499) Laccase {Trametes versicolor, laccase 2
[TaxId: 5325]}
Length = 199
Score = 28.7 bits (63), Expect = 2.3
Identities = 22/131 (16%), Positives = 38/131 (29%), Gaps = 8/131 (6%)
Query: 111 HSLEVPPSPLLPDDNHPSPTSTSVHLVSSSNTDWSDVNPDSDGFVTPKPSGVPPSSSTTT 170
H L P P P+P L + N + ++ ++ F P VP +
Sbjct: 6 HPLARMPVP-----GSPTPGGVDKALNLAFNFNGTNFFINNASFTPPT---VPVLLQILS 57
Query: 171 FVKRLFSPPTPGSSKDFVESSSSPPTHRSYGRSHHHSHHHRSHSHHHHQSQSKHHHSKPL 230
+ GS S+ T + + H H H +S +
Sbjct: 58 GAQTAQDLLPAGSVYPLPAHSTIEITLPATALAPGAPHPFHLHGHAFAVVRSAGSTTYNY 117
Query: 231 SRTMFGPVSRL 241
+ +F V
Sbjct: 118 NDPIFRDVVST 128
>d2uyoa1 c.66.1.57 (A:14-310) Putative methyltransferase ML2640
{Mycobacterium leprae [TaxId: 1769]}
Length = 297
Score = 28.6 bits (63), Expect = 3.2
Identities = 10/96 (10%), Positives = 24/96 (25%), Gaps = 6/96 (6%)
Query: 685 DVTVRNVLLMKEMGVPGVRAAMELYGYYGGRSRRPLPAALKPGGAEKIKQVLTEAGFLVP 744
+ + + +E R + G+ + L + + L G+
Sbjct: 204 ETSPLHGDEWREQMQLRFRRVSDALGFEQAVDVQELIYHDEN--RAVVADWLNRHGWRAT 261
Query: 745 GVRAAMELYGYYGGRSRRPLPAALKPGG----AEKI 776
A E+ P+ A ++
Sbjct: 262 AQSAPDEMRRVGRWGDGVPMADDKDAFAEFVTAHRL 297
>d1kn6a_ d.58.3.3 (A:) Prohormone convertase 1 pro-domain {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 73
Score = 26.3 bits (58), Expect = 3.4
Identities = 6/25 (24%), Positives = 9/25 (36%)
Query: 204 HHHSHHHRSHSHHHHQSQSKHHHSK 228
H SH RS H ++ +
Sbjct: 41 KHKSHPRRSRRSALHITKRLSDDDR 65
>d2pila_ d.24.1.1 (A:) Pilin Gc {Neisseria gonorrhoeae [TaxId: 485]}
Length = 158
Score = 27.7 bits (60), Expect = 3.5
Identities = 13/100 (13%), Positives = 23/100 (23%), Gaps = 3/100 (3%)
Query: 13 QTPSTSSLSSNLYTSTSSGNVFTSSSIGQSNFTPSSSGSNVYTSNPSGTSSVYTTISSSA 72
+ +S S G + T + S V S++ + +
Sbjct: 57 WPENNTSAGVASPPSDIKGKYVKEVEVKNGVVTATMLSSGVNNEIKGKKLSLWARRENGS 116
Query: 73 TNSVYTISSTAPSSVYTSSPPDTTTLSPIEAGGAPSPCHS 112
T + D I+ PS C
Sbjct: 117 VKWFCGQPVTRTDDDTVADAKDGKE---IDTKHLPSTCRD 153
>d1xqia1 d.58.6.1 (A:14-195) Nucleoside diphosphate kinase, NDK
{Archaeon Pyrobaculum aerophilum [TaxId: 13773]}
Length = 182
Score = 27.8 bits (61), Expect = 3.5
Identities = 19/126 (15%), Positives = 34/126 (26%), Gaps = 7/126 (5%)
Query: 215 HHHHQSQSKHHHSKPLSRTMFGPVSRLCLKVTSRTLSIQDKEEPNVLLSRTMLGPVSRLC 274
+ + + L + K+ + + L+ GP +
Sbjct: 49 FYPSSEEWLQSAGQKLLKAYQELGIDPRAKIGTDDPVEVGRIIKRNLVKYMTSGPNVVMV 108
Query: 275 LKVTSRTLSIQTMSLSSSTQLDLTGVFSALPTPFREDEEIDFEKFKFNVSKWEKVPLKGS 334
LK ++ + + T SA P R D ID + + S
Sbjct: 109 LKGNRAVEIVRKL-------VGPTSPHSAPPGTIRGDYSIDSPDLAAEEGRVVFNLVHAS 161
Query: 335 DSDHSA 340
DS A
Sbjct: 162 DSPSEA 167
>d1fvra_ d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [TaxId:
9606]}
Length = 309
Score = 28.2 bits (62), Expect = 3.6
Identities = 23/118 (19%), Positives = 37/118 (31%), Gaps = 21/118 (17%)
Query: 591 VDTLVKLAHHENIRGVKDTDNIKLANMANQTKDLNFSVFAGSAGYLLSGLLVGCAGGINA 650
++ L KL HH NI I L L ++ G LL L +
Sbjct: 61 LEVLCKLGHHPNI--------INLLGACEHRGYLYLAIEYAPHGNLLDFLRKSRVLETDP 112
Query: 651 LSAVLGGPICEL---------YDLAKAGKWEEAMKLQHRLVKPDVTVRNVLLMKEMGV 699
A+ L D+A+ + + HR + RN+L+ +
Sbjct: 113 AFAIANSTASTLSSQQLLHFAADVARGMDYLSQKQFIHRDLAA----RNILVGENYVA 166
>d1to3a_ c.1.10.1 (A:) Putative aldolase YihT {Salmonella
typhimurium [TaxId: 90371]}
Length = 291
Score = 28.1 bits (62), Expect = 4.0
Identities = 11/97 (11%), Positives = 25/97 (25%), Gaps = 11/97 (11%)
Query: 482 WPELEPSTSELKRSDRPMSVGPRSVRPSEREWQADLLKPQKHTTTRATIDLTQKAAKAGA 541
++ + + P P K +A ID ++ +GA
Sbjct: 139 LNMVKEFNELCHSNGLLSIIEPVVRPPR---------CGDKFDREQAIIDAAKELGDSGA 189
Query: 542 NAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVII 578
+ K + + + +P +I
Sbjct: 190 DL--YKVEMPLYGKGARSDLLTASQRLNGHINMPWVI 224
>d1l0sa_ b.81.2.1 (A:) Thermal hysteresis protein {Spruce budworm
(Choristoneura fumiferana), 5-turn isoforms [TaxId:
7141]}
Length = 88
Score = 26.5 bits (58), Expect = 4.3
Identities = 18/76 (23%), Positives = 31/76 (40%), Gaps = 5/76 (6%)
Query: 35 TSSSIGQSNFTPSSSGSNVYTSNPSGTSSVY-TTISSSATNSVYTISSTAPSSVYTSSPP 93
T+S + ++ S+ +N Y S V+ TT + S + V +ST+ S +
Sbjct: 5 TNSQLSANSKCEKSTLTNCYVDK----SEVFGTTCTGSRFDGVTITTSTSTGSRISGPGC 60
Query: 94 DTTTLSPIEAGGAPSP 109
+T APS
Sbjct: 61 KISTCIITGGVPAPSA 76
>d1epwa1 b.29.1.6 (A:862-1079) Botulinum neurotoxin {Clostridium
botulinum, serotype B [TaxId: 1491]}
Length = 218
Score = 27.6 bits (60), Expect = 5.1
Identities = 9/53 (16%), Positives = 16/53 (30%)
Query: 20 LSSNLYTSTSSGNVFTSSSIGQSNFTPSSSGSNVYTSNPSGTSSVYTTISSSA 72
LS V + + ++S V + +SV+ S S
Sbjct: 16 LSGYGAKVEVYDGVELNDKNQFKLTSSANSKIRVTQNQNIIFNSVFLDFSVSF 68
>d1otka_ a.25.1.2 (A:) Phenylacetic acid degradation protein PaaC
{Escherichia coli [TaxId: 562]}
Length = 244
Score = 27.5 bits (61), Expect = 6.2
Identities = 9/42 (21%), Positives = 15/42 (35%), Gaps = 5/42 (11%)
Query: 718 RPLPAALKPGGAEKIKQVLTEAGFLVPGVRAAMELYGYYGGR 759
P L+ ++ + EA VP +A GG+
Sbjct: 186 AVDPRTLRAAWEAEVFAGINEATLNVPQEQAY-----RTGGK 222
>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus
[TaxId: 5053]}
Length = 422
Score = 26.9 bits (59), Expect = 9.4
Identities = 18/120 (15%), Positives = 38/120 (31%), Gaps = 9/120 (7%)
Query: 2 IQASPITIY-VSQTPSTSSLSSNLYTSTSSGNVFTSSSIGQSNFTPSSSGSNVYT-SNPS 59
+Q + IT+ T + + + S T ++ S S +Y +
Sbjct: 295 VQLNNITVKNWKGTEANGATRPPIRVVCSDTAPCTDLTLEDIAIWTESGSSELYLCRSAY 354
Query: 60 GTSSVYTTISSSATNSVYTISSTAPSSVYTSSPPDTTTLSPIEAGGAPSPCHSLEVPPSP 119
G+ SS + + + + APS ++ + S+ +P P
Sbjct: 355 GSGYCLKDSSSHTSYTTTSTVTAAPSGYSATTMAADLA-----TAFGLT--ASIPIPTIP 407
>d3btaa1 b.29.1.6 (A:872-1078) Botulinum neurotoxin {Clostridium
botulinum, serotype A [TaxId: 1491]}
Length = 207
Score = 26.5 bits (57), Expect = 9.9
Identities = 6/78 (7%), Positives = 13/78 (16%)
Query: 20 LSSNLYTSTSSGNVFTSSSIGQSNFTPSSSGSNVYTSNPSGTSSVYTTISSSATNSVYTI 79
LS V + S + + + S + +
Sbjct: 19 LSRYASKINIGSKVNFDPIDKNQIQLFNLESSKIEVILKNAIVYNSMYENFSTSFWIRIP 78
Query: 80 SSTAPSSVYTSSPPDTTT 97
S+
Sbjct: 79 KYFNSISLNNEYTIINCM 96
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.313 0.128 0.376
Gapped
Lambda K H
0.267 0.0420 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,797,811
Number of extensions: 129636
Number of successful extensions: 438
Number of sequences better than 10.0: 1
Number of HSP's gapped: 430
Number of HSP's successfully gapped: 46
Length of query: 786
Length of database: 2,407,596
Length adjustment: 93
Effective length of query: 693
Effective length of database: 1,130,706
Effective search space: 783579258
Effective search space used: 783579258
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 57 (26.5 bits)