BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11978
(91 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|405963038|gb|EKC28647.1| CUG-BP- and ETR-3-like factor 2 [Crassostrea gigas]
Length = 647
Score = 93.2 bits (230), Expect = 2e-17, Method: Composition-based stats.
Identities = 44/69 (63%), Positives = 52/69 (75%), Gaps = 2/69 (2%)
Query: 22 QPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAAFLKIA 81
+PDPD IKMFVGQIPRSMDE DL KMF E+G VY +NVLRDK TGQSKG F + +
Sbjct: 60 EPDPDAIKMFVGQIPRSMDENDLRKMFEEFGAVYQLNVLRDKATGQSKGCCFVTFYTR-- 117
Query: 82 RAAIEPQKA 90
+AA++ Q A
Sbjct: 118 KAALDAQNA 126
Score = 40.8 bits (94), Expect = 0.10, Method: Composition-based stats.
Identities = 18/45 (40%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 29 KMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
K+FVG I + E+D+ MF+ +G + + +LRD+ GQS+G F
Sbjct: 155 KLFVGMISKKCSESDVKMMFAPFGSIEDCTILRDQ-NGQSRGCAF 198
>gi|91090137|ref|XP_976135.1| PREDICTED: similar to arrest CG31762-PC isoform 4 [Tribolium
castaneum]
Length = 494
Score = 92.4 bits (228), Expect = 3e-17, Method: Composition-based stats.
Identities = 45/70 (64%), Positives = 53/70 (75%), Gaps = 2/70 (2%)
Query: 21 EQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAAFLKI 80
EQPD D IKMFVGQ+PRSMDE DL +MF EYGRV++INVLRDK TG SKG F F +
Sbjct: 86 EQPDSDTIKMFVGQVPRSMDENDLRRMFEEYGRVHSINVLRDKTTGASKGCCFVTFFTR- 144
Query: 81 ARAAIEPQKA 90
+AA++ Q A
Sbjct: 145 -KAALQAQDA 153
Score = 37.0 bits (84), Expect = 1.4, Method: Composition-based stats.
Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 29 KMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
K+FVG + + + E D+ +FS YG + VLRD G SKG F
Sbjct: 181 KLFVGMLSKKLCENDVRTLFSGYGTIEECTVLRD-TAGNSKGCAF 224
>gi|270013480|gb|EFA09928.1| hypothetical protein TcasGA2_TC012080 [Tribolium castaneum]
Length = 469
Score = 92.0 bits (227), Expect = 4e-17, Method: Composition-based stats.
Identities = 45/70 (64%), Positives = 53/70 (75%), Gaps = 2/70 (2%)
Query: 21 EQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAAFLKI 80
EQPD D IKMFVGQ+PRSMDE DL +MF EYGRV++INVLRDK TG SKG F F +
Sbjct: 61 EQPDSDTIKMFVGQVPRSMDENDLRRMFEEYGRVHSINVLRDKTTGASKGCCFVTFFTR- 119
Query: 81 ARAAIEPQKA 90
+AA++ Q A
Sbjct: 120 -KAALQAQDA 128
Score = 37.0 bits (84), Expect = 1.4, Method: Composition-based stats.
Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 29 KMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
K+FVG + + + E D+ +FS YG + VLRD G SKG F
Sbjct: 156 KLFVGMLSKKLCENDVRTLFSGYGTIEECTVLRD-TAGNSKGCAF 199
>gi|443723647|gb|ELU11974.1| hypothetical protein CAPTEDRAFT_144233 [Capitella teleta]
Length = 461
Score = 90.5 bits (223), Expect = 1e-16, Method: Composition-based stats.
Identities = 43/67 (64%), Positives = 53/67 (79%), Gaps = 2/67 (2%)
Query: 22 QPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAAFLKIA 81
+PDPD IKMFVGQIPRSMDE+DL KMF E+G V+ +NVLRDKVTGQSKG F + +
Sbjct: 10 EPDPDAIKMFVGQIPRSMDESDLRKMFEEFGPVFQLNVLRDKVTGQSKGCCFVTFYTR-- 67
Query: 82 RAAIEPQ 88
++A+E Q
Sbjct: 68 KSALEAQ 74
Score = 34.3 bits (77), Expect = 8.6, Method: Composition-based stats.
Identities = 16/45 (35%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Query: 29 KMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
K+FVG + + +E ++ MF+ +G + VLR++ GQS+G F
Sbjct: 105 KLFVGMLSKKCNENEVRMMFAPFGTIEECTVLREQ-NGQSRGCAF 148
>gi|291232672|ref|XP_002736280.1| PREDICTED: bruno-2-like [Saccoglossus kowalevskii]
Length = 500
Score = 89.7 bits (221), Expect = 2e-16, Method: Composition-based stats.
Identities = 42/70 (60%), Positives = 52/70 (74%), Gaps = 2/70 (2%)
Query: 21 EQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAAFLKI 80
+QPDPD IKMFVGQIPRSMDE DL + E+G VY +NVLRDKVTGQS+G F + +
Sbjct: 25 QQPDPDAIKMFVGQIPRSMDENDLREFLEEFGPVYQLNVLRDKVTGQSRGCCFVTYYTR- 83
Query: 81 ARAAIEPQKA 90
+AA++ Q A
Sbjct: 84 -KAALQAQNA 92
Score = 37.7 bits (86), Expect = 0.88, Method: Composition-based stats.
Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 29 KMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
K+FVG I + +E D+ MF+ +G + VLRD G SKG F
Sbjct: 121 KLFVGMISKKCNEGDIRLMFAPFGSIEECTVLRD-AQGVSKGCAF 164
>gi|321460482|gb|EFX71524.1| hypothetical protein DAPPUDRAFT_227924 [Daphnia pulex]
Length = 403
Score = 88.6 bits (218), Expect = 4e-16, Method: Composition-based stats.
Identities = 39/53 (73%), Positives = 46/53 (86%)
Query: 21 EQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
+QPDPD IKMFVGQIPRSMDE DL KMF +YG+V+ +NVLRDK++GQSKG F
Sbjct: 7 DQPDPDAIKMFVGQIPRSMDENDLRKMFEDYGQVHQVNVLRDKISGQSKGCCF 59
Score = 35.0 bits (79), Expect = 6.3, Method: Composition-based stats.
Identities = 15/34 (44%), Positives = 21/34 (61%)
Query: 29 KMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRD 62
K+FVG + + + E D+ MFS YG + VLRD
Sbjct: 102 KLFVGMLSKKISENDVRIMFSAYGSIEECTVLRD 135
>gi|157108557|ref|XP_001650283.1| hypothetical protein AaeL_AAEL000691 [Aedes aegypti]
gi|108884043|gb|EAT48268.1| AAEL000691-PA [Aedes aegypti]
Length = 201
Score = 87.4 bits (215), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 41/70 (58%), Positives = 53/70 (75%), Gaps = 2/70 (2%)
Query: 21 EQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAAFLKI 80
+QPDPD+IKMFVGQ+PRSMDE L +MF E+GRV+ INVLRDK +G SKG F + +
Sbjct: 100 DQPDPDYIKMFVGQVPRSMDEQQLKEMFEEFGRVHQINVLRDKTSGLSKGCCFVTFYTR- 158
Query: 81 ARAAIEPQKA 90
+AA++ Q A
Sbjct: 159 -KAALKAQDA 167
>gi|312384163|gb|EFR28956.1| hypothetical protein AND_02458 [Anopheles darlingi]
Length = 314
Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 42/72 (58%), Positives = 53/72 (73%), Gaps = 4/72 (5%)
Query: 21 EQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKG----KIFEAA 76
+QPDPD+IKMFVGQ+PRSMDE L +MF E+GRV+ INVLRDK +GQSKG +IFE
Sbjct: 163 DQPDPDYIKMFVGQVPRSMDEQQLKEMFEEFGRVHQINVLRDKTSGQSKGLEVVEIFEIW 222
Query: 77 FLKIARAAIEPQ 88
A++ P+
Sbjct: 223 ASNPAKSDKRPE 234
>gi|380013066|ref|XP_003690591.1| PREDICTED: CUGBP Elav-like family member 2-like [Apis florea]
Length = 582
Score = 86.7 bits (213), Expect = 2e-15, Method: Composition-based stats.
Identities = 39/70 (55%), Positives = 51/70 (72%), Gaps = 2/70 (2%)
Query: 21 EQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAAFLKI 80
EQPDPD IKMFVGQ+P MDE DL K+F E+GRV+ IN+LRDK+TG +G F + +
Sbjct: 79 EQPDPDNIKMFVGQVPHDMDENDLRKLFEEFGRVHQINILRDKITGSHRGCCFVTFYTR- 137
Query: 81 ARAAIEPQKA 90
+AA++ Q A
Sbjct: 138 -KAALDAQNA 146
Score = 39.7 bits (91), Expect = 0.25, Method: Composition-based stats.
Identities = 20/45 (44%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Query: 29 KMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
K+FVG + + E D+ MFS YG + +VLRD TG+SK F
Sbjct: 174 KLFVGMLSKKFTENDVRNMFSVYGTIEECSVLRDS-TGKSKACAF 217
>gi|289812790|gb|ADD18414.1| RNA-binding protein CUGBP1/BrUNO [Glossina morsitans morsitans]
Length = 706
Score = 86.3 bits (212), Expect = 2e-15, Method: Composition-based stats.
Identities = 42/70 (60%), Positives = 53/70 (75%), Gaps = 2/70 (2%)
Query: 21 EQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAAFLKI 80
++PDPD IKMFVGQ+P+SMDEA L +MF EYG V++INVLRDK TG SKG F + +
Sbjct: 292 KEPDPDNIKMFVGQVPKSMDEAQLREMFEEYGPVHSINVLRDKATGISKGCCFVTFYTR- 350
Query: 81 ARAAIEPQKA 90
RAA++ Q A
Sbjct: 351 -RAALKAQDA 359
Score = 39.7 bits (91), Expect = 0.22, Method: Composition-based stats.
Identities = 19/45 (42%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 29 KMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
K+FVG + + ++E D+ K+F +G + VLRD+ GQSKG F
Sbjct: 387 KLFVGMLNKKLNENDVRKLFEVHGAIEECTVLRDQ-NGQSKGCAF 430
>gi|158288351|ref|XP_559774.3| AGAP009474-PA [Anopheles gambiae str. PEST]
gi|157019209|gb|EAL41386.3| AGAP009474-PA [Anopheles gambiae str. PEST]
Length = 104
Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 37/51 (72%), Positives = 45/51 (88%)
Query: 21 EQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGK 71
+QPDPD+IKMFVGQ+PRSMDE L +MF E+GRV+ INVLRDK +GQSKG+
Sbjct: 48 DQPDPDYIKMFVGQVPRSMDEQQLKEMFEEFGRVHQINVLRDKTSGQSKGE 98
>gi|328780076|ref|XP_003249751.1| PREDICTED: CUGBP Elav-like family member 2-like [Apis mellifera]
Length = 628
Score = 86.3 bits (212), Expect = 2e-15, Method: Composition-based stats.
Identities = 39/70 (55%), Positives = 51/70 (72%), Gaps = 2/70 (2%)
Query: 21 EQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAAFLKI 80
EQPDPD IKMFVGQ+P MDE DL K+F E+GRV+ IN+LRDK+TG +G F + +
Sbjct: 102 EQPDPDNIKMFVGQVPHDMDENDLRKLFEEFGRVHQINILRDKITGSHRGCCFVTFYTR- 160
Query: 81 ARAAIEPQKA 90
+AA++ Q A
Sbjct: 161 -KAALDAQNA 169
Score = 39.3 bits (90), Expect = 0.31, Method: Composition-based stats.
Identities = 20/45 (44%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Query: 29 KMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
K+FVG + + E D+ MFS YG + +VLRD TG+SK F
Sbjct: 197 KLFVGMLSKKFTENDVRNMFSVYGTIEECSVLRDS-TGKSKACAF 240
>gi|350417598|ref|XP_003491500.1| PREDICTED: LOW QUALITY PROTEIN: CUGBP Elav-like family member
2-like [Bombus impatiens]
Length = 635
Score = 85.9 bits (211), Expect = 3e-15, Method: Composition-based stats.
Identities = 39/70 (55%), Positives = 51/70 (72%), Gaps = 2/70 (2%)
Query: 21 EQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAAFLKI 80
EQPDPD IKMFVGQ+P MDE DL K+F E+GRV+ IN+LRDK+TG +G F + +
Sbjct: 102 EQPDPDNIKMFVGQVPHDMDENDLRKLFEEFGRVHQINILRDKITGSHRGCCFVTFYTR- 160
Query: 81 ARAAIEPQKA 90
+AA++ Q A
Sbjct: 161 -KAALDAQNA 169
Score = 39.3 bits (90), Expect = 0.32, Method: Composition-based stats.
Identities = 20/45 (44%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Query: 29 KMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
K+FVG + + E D+ MFS YG + +VLRD TG+SK F
Sbjct: 197 KLFVGMLSKKFSENDVRNMFSIYGTIEECSVLRDS-TGKSKACAF 240
>gi|340718155|ref|XP_003397537.1| PREDICTED: CUGBP Elav-like family member 2-like [Bombus terrestris]
Length = 627
Score = 85.9 bits (211), Expect = 3e-15, Method: Composition-based stats.
Identities = 39/70 (55%), Positives = 51/70 (72%), Gaps = 2/70 (2%)
Query: 21 EQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAAFLKI 80
EQPDPD IKMFVGQ+P MDE DL K+F E+GRV+ IN+LRDK+TG +G F + +
Sbjct: 101 EQPDPDNIKMFVGQVPHDMDENDLRKLFEEFGRVHQINILRDKITGSHRGCCFVTFYTR- 159
Query: 81 ARAAIEPQKA 90
+AA++ Q A
Sbjct: 160 -KAALDAQNA 168
Score = 39.3 bits (90), Expect = 0.32, Method: Composition-based stats.
Identities = 20/45 (44%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Query: 29 KMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
K+FVG + + E D+ MFS YG + +VLRD TG+SK F
Sbjct: 196 KLFVGMLSKKFSENDVRNMFSIYGTIEECSVLRDS-TGKSKACAF 239
>gi|390176614|ref|XP_003736147.1| GA25725, isoform C [Drosophila pseudoobscura pseudoobscura]
gi|388858698|gb|EIM52220.1| GA25725, isoform C [Drosophila pseudoobscura pseudoobscura]
Length = 595
Score = 85.9 bits (211), Expect = 3e-15, Method: Composition-based stats.
Identities = 43/70 (61%), Positives = 53/70 (75%), Gaps = 2/70 (2%)
Query: 21 EQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAAFLKI 80
++PDPD IKMFVGQIP+SMDE+ L +MF EYG V++INVLRDK TG SKG F F +
Sbjct: 133 KEPDPDNIKMFVGQIPKSMDESQLREMFEEYGPVHSINVLRDKATGISKGCCFVTFFTR- 191
Query: 81 ARAAIEPQKA 90
RAA++ Q A
Sbjct: 192 -RAALKAQDA 200
Score = 39.7 bits (91), Expect = 0.26, Method: Composition-based stats.
Identities = 19/45 (42%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 29 KMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
K+FVG + + ++E D+ K+F +G + VLRD+ GQSKG F
Sbjct: 228 KLFVGMLNKKLNENDVRKLFEVHGNIEECTVLRDQ-NGQSKGCAF 271
>gi|390176612|ref|XP_002132720.2| GA25725, isoform B [Drosophila pseudoobscura pseudoobscura]
gi|388858697|gb|EDY70122.2| GA25725, isoform B [Drosophila pseudoobscura pseudoobscura]
Length = 818
Score = 85.5 bits (210), Expect = 4e-15, Method: Composition-based stats.
Identities = 43/70 (61%), Positives = 53/70 (75%), Gaps = 2/70 (2%)
Query: 21 EQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAAFLKI 80
++PDPD IKMFVGQIP+SMDE+ L +MF EYG V++INVLRDK TG SKG F F +
Sbjct: 356 KEPDPDNIKMFVGQIPKSMDESQLREMFEEYGPVHSINVLRDKATGISKGCCFVTFFTR- 414
Query: 81 ARAAIEPQKA 90
RAA++ Q A
Sbjct: 415 -RAALKAQDA 423
Score = 39.3 bits (90), Expect = 0.27, Method: Composition-based stats.
Identities = 19/45 (42%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 29 KMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
K+FVG + + ++E D+ K+F +G + VLRD+ GQSKG F
Sbjct: 451 KLFVGMLNKKLNENDVRKLFEVHGNIEECTVLRDQ-NGQSKGCAF 494
>gi|242022168|ref|XP_002431513.1| conserved hypothetical protein [Pediculus humanus corporis]
gi|212516807|gb|EEB18775.1| conserved hypothetical protein [Pediculus humanus corporis]
Length = 73
Score = 85.5 bits (210), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 39/52 (75%), Positives = 43/52 (82%)
Query: 16 SMSLPEQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQ 67
+ + EQPDPD+IKMFVGQIPRSMDE L MF EYGRV+ INVLRDKVTGQ
Sbjct: 13 TTDIIEQPDPDYIKMFVGQIPRSMDEEQLRVMFEEYGRVHQINVLRDKVTGQ 64
>gi|195388102|ref|XP_002052729.1| GJ17715 [Drosophila virilis]
gi|194149186|gb|EDW64884.1| GJ17715 [Drosophila virilis]
Length = 831
Score = 85.1 bits (209), Expect = 4e-15, Method: Composition-based stats.
Identities = 42/70 (60%), Positives = 53/70 (75%), Gaps = 2/70 (2%)
Query: 21 EQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAAFLKI 80
++PDPD IKMFVGQ+P+SMDEA L +MF EYG V++INVLRDK TG SKG F + +
Sbjct: 364 KEPDPDNIKMFVGQVPKSMDEAQLREMFEEYGPVHSINVLRDKATGISKGCCFVTFYTR- 422
Query: 81 ARAAIEPQKA 90
RAA++ Q A
Sbjct: 423 -RAALKAQDA 431
Score = 39.3 bits (90), Expect = 0.31, Method: Composition-based stats.
Identities = 19/45 (42%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 29 KMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
K+FVG + + ++E D+ K+F +G + VLRD+ GQSKG F
Sbjct: 459 KLFVGMLNKKLNENDVRKLFEVHGAIEECTVLRDQ-NGQSKGCAF 502
>gi|195117924|ref|XP_002003495.1| GI17944 [Drosophila mojavensis]
gi|193914070|gb|EDW12937.1| GI17944 [Drosophila mojavensis]
Length = 851
Score = 85.1 bits (209), Expect = 5e-15, Method: Composition-based stats.
Identities = 42/70 (60%), Positives = 53/70 (75%), Gaps = 2/70 (2%)
Query: 21 EQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAAFLKI 80
++PDPD IKMFVGQ+P+SMDEA L +MF EYG V++INVLRDK TG SKG F + +
Sbjct: 384 KEPDPDNIKMFVGQVPKSMDEAQLREMFEEYGPVHSINVLRDKATGISKGCCFVTFYTR- 442
Query: 81 ARAAIEPQKA 90
RAA++ Q A
Sbjct: 443 -RAALKAQDA 451
Score = 38.5 bits (88), Expect = 0.48, Method: Composition-based stats.
Identities = 18/45 (40%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 29 KMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
K+F+G + + ++E D+ K+F +G + VLRD+ GQSKG F
Sbjct: 479 KLFIGMLNKKLNENDVRKLFEVHGAIEECTVLRDQ-NGQSKGCAF 522
>gi|442762665|gb|JAA73491.1| Putative rna-binding protein cugbp1/bruno rrm superfamily,
partial [Ixodes ricinus]
Length = 110
Score = 84.7 bits (208), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 41/69 (59%), Positives = 50/69 (72%), Gaps = 2/69 (2%)
Query: 21 EQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAAFLKI 80
EQPDPD IKMFVGQIPRS DE DL KMF ++G VY INVLRDK TG S+G F + +
Sbjct: 7 EQPDPDAIKMFVGQIPRSWDENDLKKMFEDFGPVYQINVLRDKATGTSRGCCFVTFYTR- 65
Query: 81 ARAAIEPQK 89
++A++ Q
Sbjct: 66 -KSALDAQN 73
>gi|2148976|gb|AAB58464.1| bruno [Drosophila melanogaster]
Length = 604
Score = 84.7 bits (208), Expect = 7e-15, Method: Composition-based stats.
Identities = 41/70 (58%), Positives = 53/70 (75%), Gaps = 2/70 (2%)
Query: 21 EQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAAFLKI 80
++PDPD IKMFVGQ+P+SMDE+ L +MF EYG V++INVLRDK TG SKG F + +
Sbjct: 144 KEPDPDNIKMFVGQVPKSMDESQLREMFEEYGAVHSINVLRDKATGISKGCCFVTFYTR- 202
Query: 81 ARAAIEPQKA 90
RAA++ Q A
Sbjct: 203 -RAALKAQDA 211
Score = 39.3 bits (90), Expect = 0.29, Method: Composition-based stats.
Identities = 19/45 (42%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 29 KMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
K+FVG + + ++E D+ K+F +G + VLRD+ GQSKG F
Sbjct: 239 KLFVGMLNKKLNENDVRKLFEVHGAIEECTVLRDQ-NGQSKGCAF 282
>gi|195351033|ref|XP_002042041.1| GM26763 [Drosophila sechellia]
gi|194123865|gb|EDW45908.1| GM26763 [Drosophila sechellia]
Length = 816
Score = 84.7 bits (208), Expect = 7e-15, Method: Composition-based stats.
Identities = 41/70 (58%), Positives = 53/70 (75%), Gaps = 2/70 (2%)
Query: 21 EQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAAFLKI 80
++PDPD IKMFVGQ+P+SMDE+ L +MF EYG V++INVLRDK TG SKG F + +
Sbjct: 344 KEPDPDNIKMFVGQVPKSMDESQLREMFEEYGAVHSINVLRDKATGISKGCCFVTFYTR- 402
Query: 81 ARAAIEPQKA 90
RAA++ Q A
Sbjct: 403 -RAALKAQDA 411
Score = 39.3 bits (90), Expect = 0.29, Method: Composition-based stats.
Identities = 19/45 (42%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 29 KMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
K+FVG + + ++E D+ K+F +G + VLRD+ GQSKG F
Sbjct: 439 KLFVGMLNKKLNENDVRKLFEVHGAIEECTVLRDQ-NGQSKGCAF 482
>gi|195035643|ref|XP_001989285.1| GH11642 [Drosophila grimshawi]
gi|193905285|gb|EDW04152.1| GH11642 [Drosophila grimshawi]
Length = 833
Score = 84.3 bits (207), Expect = 7e-15, Method: Composition-based stats.
Identities = 42/70 (60%), Positives = 53/70 (75%), Gaps = 2/70 (2%)
Query: 21 EQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAAFLKI 80
++PDPD IKMFVGQ+P+SMDEA L +MF EYG V++INVLRDK TG SKG F + +
Sbjct: 364 KEPDPDNIKMFVGQVPKSMDEAQLREMFEEYGPVHSINVLRDKATGISKGCCFVTFYTR- 422
Query: 81 ARAAIEPQKA 90
RAA++ Q A
Sbjct: 423 -RAALKAQDA 431
Score = 37.7 bits (86), Expect = 0.95, Method: Composition-based stats.
Identities = 19/45 (42%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Query: 29 KMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
K+FVG + + ++E D+ K+F +G + VLRD GQSKG F
Sbjct: 459 KLFVGMLNKKLNENDVRKLFEVHGGIEECTVLRDP-NGQSKGCAF 502
>gi|195435047|ref|XP_002065513.1| GK15493 [Drosophila willistoni]
gi|194161598|gb|EDW76499.1| GK15493 [Drosophila willistoni]
Length = 866
Score = 84.3 bits (207), Expect = 8e-15, Method: Composition-based stats.
Identities = 41/70 (58%), Positives = 52/70 (74%), Gaps = 2/70 (2%)
Query: 21 EQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAAFLKI 80
++PDPD IKMFVGQ+P+SMDE L +MF EYG V++INVLRDK TG SKG F + +
Sbjct: 372 KEPDPDNIKMFVGQVPKSMDETQLREMFEEYGAVHSINVLRDKATGISKGCCFVTFYTR- 430
Query: 81 ARAAIEPQKA 90
RAA++ Q A
Sbjct: 431 -RAALKAQDA 439
Score = 39.3 bits (90), Expect = 0.27, Method: Composition-based stats.
Identities = 19/45 (42%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 29 KMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
K+FVG + + ++E D+ K+F +G + VLRD+ GQSKG F
Sbjct: 467 KLFVGMLNKKLNENDVRKLFEVHGAIEECTVLRDQ-NGQSKGCAF 510
>gi|2231301|gb|AAB61993.1| testis-specific RNP-type RNA binding protein [Drosophila
melanogaster]
Length = 808
Score = 84.3 bits (207), Expect = 9e-15, Method: Composition-based stats.
Identities = 41/70 (58%), Positives = 53/70 (75%), Gaps = 2/70 (2%)
Query: 21 EQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAAFLKI 80
++PDPD IKMFVGQ+P+SMDE+ L +MF EYG V++INVLRDK TG SKG F + +
Sbjct: 348 KEPDPDNIKMFVGQVPKSMDESQLREMFEEYGAVHSINVLRDKATGISKGCCFVTFYTR- 406
Query: 81 ARAAIEPQKA 90
RAA++ Q A
Sbjct: 407 -RAALKAQDA 415
Score = 39.3 bits (90), Expect = 0.33, Method: Composition-based stats.
Identities = 19/45 (42%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 29 KMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
K+FVG + + ++E D+ K+F +G + VLRD+ GQSKG F
Sbjct: 443 KLFVGMLNKKLNENDVRKLFEVHGAIEECTVLRDQ-NGQSKGCAF 486
>gi|259089631|gb|ACV91671.1| AT31783p [Drosophila melanogaster]
Length = 810
Score = 84.0 bits (206), Expect = 1e-14, Method: Composition-based stats.
Identities = 41/70 (58%), Positives = 53/70 (75%), Gaps = 2/70 (2%)
Query: 21 EQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAAFLKI 80
++PDPD IKMFVGQ+P+SMDE+ L +MF EYG V++INVLRDK TG SKG F + +
Sbjct: 350 KEPDPDNIKMFVGQVPKSMDESQLREMFEEYGAVHSINVLRDKATGISKGCCFVTFYTR- 408
Query: 81 ARAAIEPQKA 90
RAA++ Q A
Sbjct: 409 -RAALKAQDA 417
Score = 39.3 bits (90), Expect = 0.34, Method: Composition-based stats.
Identities = 19/45 (42%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 29 KMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
K+FVG + + ++E D+ K+F +G + VLRD+ GQSKG F
Sbjct: 445 KLFVGMLNKKLNENDVRKLFEVHGAIEECTVLRDQ-NGQSKGCAF 488
>gi|328703007|ref|XP_003242066.1| PREDICTED: CUGBP Elav-like family member 2-like [Acyrthosiphon
pisum]
Length = 188
Score = 84.0 bits (206), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 39/70 (55%), Positives = 52/70 (74%), Gaps = 2/70 (2%)
Query: 21 EQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAAFLKI 80
EQP+ D+IKMFVGQIPR+M+E DL MF E+GRVY +N+LRDK +G SKG F + +
Sbjct: 81 EQPETDYIKMFVGQIPRAMNEQDLMDMFGEFGRVYQLNLLRDKFSGVSKGCCFVTYYTR- 139
Query: 81 ARAAIEPQKA 90
+AA++ Q A
Sbjct: 140 -KAALDAQNA 148
>gi|307193705|gb|EFN76388.1| CUG-BP- and ETR-3-like factor 6 [Harpegnathos saltator]
Length = 57
Score = 84.0 bits (206), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 36/51 (70%), Positives = 41/51 (80%)
Query: 21 EQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGK 71
EQPDPD IKMFVGQ+P MDE DL MF EYGRV+ IN+LRDK+TG +GK
Sbjct: 7 EQPDPDNIKMFVGQVPHDMDENDLRTMFEEYGRVHQINILRDKITGSHRGK 57
>gi|195472345|ref|XP_002088461.1| GE18580 [Drosophila yakuba]
gi|194174562|gb|EDW88173.1| GE18580 [Drosophila yakuba]
Length = 830
Score = 83.6 bits (205), Expect = 1e-14, Method: Composition-based stats.
Identities = 41/70 (58%), Positives = 53/70 (75%), Gaps = 2/70 (2%)
Query: 21 EQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAAFLKI 80
++PDPD IKMFVGQ+P+SMDE+ L +MF EYG V++INVLRDK TG SKG F + +
Sbjct: 358 KEPDPDNIKMFVGQVPKSMDESQLREMFEEYGAVHSINVLRDKATGISKGCCFVTFYTR- 416
Query: 81 ARAAIEPQKA 90
RAA++ Q A
Sbjct: 417 -RAALKAQDA 425
Score = 38.9 bits (89), Expect = 0.37, Method: Composition-based stats.
Identities = 19/45 (42%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 29 KMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
K+FVG + + ++E D+ K+F +G + VLRD+ GQSKG F
Sbjct: 453 KLFVGMLNKKLNENDVRKLFEVHGAIEECTVLRDQ-NGQSKGCAF 496
>gi|194861289|ref|XP_001969750.1| GG23776 [Drosophila erecta]
gi|190661617|gb|EDV58809.1| GG23776 [Drosophila erecta]
Length = 837
Score = 83.6 bits (205), Expect = 1e-14, Method: Composition-based stats.
Identities = 41/70 (58%), Positives = 53/70 (75%), Gaps = 2/70 (2%)
Query: 21 EQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAAFLKI 80
++PDPD IKMFVGQ+P+SMDE+ L +MF EYG V++INVLRDK TG SKG F + +
Sbjct: 365 KEPDPDNIKMFVGQVPKSMDESQLREMFEEYGAVHSINVLRDKATGISKGCCFVTFYTR- 423
Query: 81 ARAAIEPQKA 90
RAA++ Q A
Sbjct: 424 -RAALKAQDA 432
Score = 38.9 bits (89), Expect = 0.38, Method: Composition-based stats.
Identities = 19/45 (42%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 29 KMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
K+FVG + + ++E D+ K+F +G + VLRD+ GQSKG F
Sbjct: 460 KLFVGMLNKKLNENDVRKLFEVHGAIEECTVLRDQ-NGQSKGCAF 503
>gi|195578717|ref|XP_002079210.1| GD23828 [Drosophila simulans]
gi|194191219|gb|EDX04795.1| GD23828 [Drosophila simulans]
Length = 821
Score = 83.6 bits (205), Expect = 1e-14, Method: Composition-based stats.
Identities = 41/70 (58%), Positives = 53/70 (75%), Gaps = 2/70 (2%)
Query: 21 EQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAAFLKI 80
++PDPD IKMFVGQ+P+SMDE+ L +MF EYG V++INVLRDK TG SKG F + +
Sbjct: 349 KEPDPDNIKMFVGQVPKSMDESQLREMFEEYGAVHSINVLRDKATGISKGCCFVTFYTR- 407
Query: 81 ARAAIEPQKA 90
RAA++ Q A
Sbjct: 408 -RAALKAQDA 416
Score = 38.9 bits (89), Expect = 0.39, Method: Composition-based stats.
Identities = 19/45 (42%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 29 KMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
K+FVG + + ++E D+ K+F +G + VLRD+ GQSKG F
Sbjct: 444 KLFVGMLNKKLNENDVRKLFEVHGAIEECTVLRDQ-NGQSKGCAF 487
>gi|194761400|ref|XP_001962917.1| GF14192 [Drosophila ananassae]
gi|190616614|gb|EDV32138.1| GF14192 [Drosophila ananassae]
Length = 852
Score = 83.2 bits (204), Expect = 2e-14, Method: Composition-based stats.
Identities = 41/70 (58%), Positives = 53/70 (75%), Gaps = 2/70 (2%)
Query: 21 EQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAAFLKI 80
++PDPD IKMFVGQ+P+SMDE+ L +MF EYG V++INVLRDK TG SKG F + +
Sbjct: 378 KEPDPDNIKMFVGQVPKSMDESQLREMFEEYGPVHSINVLRDKATGISKGCCFVTFYTR- 436
Query: 81 ARAAIEPQKA 90
RAA++ Q A
Sbjct: 437 -RAALKAQDA 445
Score = 38.9 bits (89), Expect = 0.42, Method: Composition-based stats.
Identities = 19/45 (42%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 29 KMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
K+FVG + + ++E D+ K+F +G + VLRD+ GQSKG F
Sbjct: 473 KLFVGMLNKKLNENDVRKLFEVHGAIEECTVLRDQ-NGQSKGCAF 516
>gi|442627567|ref|NP_723738.2| arrest, isoform F [Drosophila melanogaster]
gi|440213732|gb|AAN10811.2| arrest, isoform F [Drosophila melanogaster]
Length = 620
Score = 82.8 bits (203), Expect = 3e-14, Method: Composition-based stats.
Identities = 40/70 (57%), Positives = 52/70 (74%), Gaps = 2/70 (2%)
Query: 21 EQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAAFLKI 80
++PDPD IKMFVGQ+P+SMDE+ L +MF EYG V++INVLRDK TG SKG F + +
Sbjct: 144 KEPDPDNIKMFVGQVPKSMDESQLREMFEEYGAVHSINVLRDKATGISKGCCFVTFYTR- 202
Query: 81 ARAAIEPQKA 90
AA++ Q A
Sbjct: 203 -HAALKAQDA 211
Score = 39.7 bits (91), Expect = 0.25, Method: Composition-based stats.
Identities = 19/45 (42%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 29 KMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
K+FVG + + ++E D+ K+F +G + VLRD+ GQSKG F
Sbjct: 239 KLFVGMLNKKLNENDVRKLFEVHGAIEECTVLRDQ-NGQSKGCAF 282
>gi|442627571|ref|NP_001260404.1| arrest, isoform H [Drosophila melanogaster]
gi|442627573|ref|NP_001260405.1| arrest, isoform I [Drosophila melanogaster]
gi|442627575|ref|NP_001260406.1| arrest, isoform J [Drosophila melanogaster]
gi|442627577|ref|NP_001260407.1| arrest, isoform K [Drosophila melanogaster]
gi|440213734|gb|AGB92939.1| arrest, isoform H [Drosophila melanogaster]
gi|440213735|gb|AGB92940.1| arrest, isoform I [Drosophila melanogaster]
gi|440213736|gb|AGB92941.1| arrest, isoform J [Drosophila melanogaster]
gi|440213737|gb|AGB92942.1| arrest, isoform K [Drosophila melanogaster]
Length = 573
Score = 82.8 bits (203), Expect = 3e-14, Method: Composition-based stats.
Identities = 40/70 (57%), Positives = 52/70 (74%), Gaps = 2/70 (2%)
Query: 21 EQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAAFLKI 80
++PDPD IKMFVGQ+P+SMDE+ L +MF EYG V++INVLRDK TG SKG F + +
Sbjct: 113 KEPDPDNIKMFVGQVPKSMDESQLREMFEEYGAVHSINVLRDKATGISKGCCFVTFYTR- 171
Query: 81 ARAAIEPQKA 90
AA++ Q A
Sbjct: 172 -HAALKAQDA 180
Score = 39.7 bits (91), Expect = 0.25, Method: Composition-based stats.
Identities = 19/45 (42%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 29 KMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
K+FVG + + ++E D+ K+F +G + VLRD+ GQSKG F
Sbjct: 208 KLFVGMLNKKLNENDVRKLFEVHGAIEECTVLRDQ-NGQSKGCAF 251
>gi|170042551|ref|XP_001848985.1| conserved hypothetical protein [Culex quinquefasciatus]
gi|167866085|gb|EDS29468.1| conserved hypothetical protein [Culex quinquefasciatus]
Length = 120
Score = 82.4 bits (202), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 36/51 (70%), Positives = 43/51 (84%)
Query: 21 EQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGK 71
+QPDPD+IKMFVGQ+PRSMDE L +MF E+GRV+ INVLRDK +G SKG
Sbjct: 70 DQPDPDYIKMFVGQVPRSMDEQQLKEMFEEFGRVHQINVLRDKASGLSKGN 120
>gi|24583877|ref|NP_723739.1| arrest, isoform A [Drosophila melanogaster]
gi|281364913|ref|NP_001162963.1| arrest, isoform E [Drosophila melanogaster]
gi|15291827|gb|AAK93182.1| LD29068p [Drosophila melanogaster]
gi|22946320|gb|AAN10812.1| arrest, isoform A [Drosophila melanogaster]
gi|220945910|gb|ACL85498.1| aret-PA [synthetic construct]
gi|220955600|gb|ACL90343.1| aret-PA [synthetic construct]
gi|272407017|gb|ACZ94249.1| arrest, isoform E [Drosophila melanogaster]
Length = 604
Score = 82.4 bits (202), Expect = 3e-14, Method: Composition-based stats.
Identities = 40/70 (57%), Positives = 52/70 (74%), Gaps = 2/70 (2%)
Query: 21 EQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAAFLKI 80
++PDPD IKMFVGQ+P+SMDE+ L +MF EYG V++INVLRDK TG SKG F + +
Sbjct: 144 KEPDPDNIKMFVGQVPKSMDESQLREMFEEYGAVHSINVLRDKATGISKGCCFVTFYTR- 202
Query: 81 ARAAIEPQKA 90
AA++ Q A
Sbjct: 203 -HAALKAQDA 211
Score = 39.3 bits (90), Expect = 0.27, Method: Composition-based stats.
Identities = 19/45 (42%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 29 KMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
K+FVG + + ++E D+ K+F +G + VLRD+ GQSKG F
Sbjct: 239 KLFVGMLNKKLNENDVRKLFEVHGAIEECTVLRDQ-NGQSKGCAF 282
>gi|322798820|gb|EFZ20367.1| hypothetical protein SINV_06794 [Solenopsis invicta]
gi|332021717|gb|EGI62073.1| CUG-BP- and ETR-3-like factor 6 [Acromyrmex echinatior]
Length = 57
Score = 82.4 bits (202), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 35/51 (68%), Positives = 41/51 (80%)
Query: 21 EQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGK 71
EQPDPD IKMFVGQ+P MDE DL MF EYGRV+ IN+LRDK+TG +G+
Sbjct: 7 EQPDPDNIKMFVGQVPHDMDENDLRTMFEEYGRVHQINILRDKITGSHRGE 57
>gi|260788576|ref|XP_002589325.1| hypothetical protein BRAFLDRAFT_218148 [Branchiostoma floridae]
gi|229274502|gb|EEN45336.1| hypothetical protein BRAFLDRAFT_218148 [Branchiostoma floridae]
Length = 58
Score = 82.0 bits (201), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 36/57 (63%), Positives = 45/57 (78%)
Query: 16 SMSLPEQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKI 72
+ + P +PD D IKMFVGQIPRSMDE DL +MF E+G VY +NVLRD+ TGQS+G +
Sbjct: 2 NTTAPTEPDTDTIKMFVGQIPRSMDEKDLRQMFEEFGPVYQLNVLRDRATGQSRGTL 58
>gi|24583873|ref|NP_723737.1| arrest, isoform B [Drosophila melanogaster]
gi|442627569|ref|NP_001260403.1| arrest, isoform G [Drosophila melanogaster]
gi|22946318|gb|AAN10810.1| arrest, isoform B [Drosophila melanogaster]
gi|375065944|gb|AFA28453.1| FI19388p1 [Drosophila melanogaster]
gi|440213733|gb|AGB92938.1| arrest, isoform G [Drosophila melanogaster]
Length = 810
Score = 82.0 bits (201), Expect = 4e-14, Method: Composition-based stats.
Identities = 40/70 (57%), Positives = 52/70 (74%), Gaps = 2/70 (2%)
Query: 21 EQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAAFLKI 80
++PDPD IKMFVGQ+P+SMDE+ L +MF EYG V++INVLRDK TG SKG F + +
Sbjct: 350 KEPDPDNIKMFVGQVPKSMDESQLREMFEEYGAVHSINVLRDKATGISKGCCFVTFYTR- 408
Query: 81 ARAAIEPQKA 90
AA++ Q A
Sbjct: 409 -HAALKAQDA 417
Score = 39.3 bits (90), Expect = 0.34, Method: Composition-based stats.
Identities = 19/45 (42%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 29 KMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
K+FVG + + ++E D+ K+F +G + VLRD+ GQSKG F
Sbjct: 445 KLFVGMLNKKLNENDVRKLFEVHGAIEECTVLRDQ-NGQSKGCAF 488
>gi|242001754|ref|XP_002435520.1| conserved hypothetical protein [Ixodes scapularis]
gi|215498856|gb|EEC08350.1| conserved hypothetical protein [Ixodes scapularis]
Length = 60
Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 37/49 (75%), Positives = 40/49 (81%)
Query: 21 EQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSK 69
EQPDPD IKMFVGQIPRS DE DL KMF ++G VY INVLRDK TG S+
Sbjct: 7 EQPDPDAIKMFVGQIPRSWDENDLKKMFEDFGPVYQINVLRDKATGTSR 55
>gi|383852852|ref|XP_003701939.1| PREDICTED: CUGBP Elav-like family member 6-like, partial
[Megachile rotundata]
Length = 55
Score = 79.0 bits (193), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 33/49 (67%), Positives = 40/49 (81%)
Query: 21 EQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSK 69
EQPDPD IKMFVGQ+P MDE DL K+F E+GRV+ IN+LRDK+TG +
Sbjct: 7 EQPDPDNIKMFVGQVPHDMDENDLRKLFEEFGRVHQINILRDKITGSHR 55
>gi|326505362|dbj|BAK03068.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 601
Score = 77.0 bits (188), Expect = 1e-12, Method: Composition-based stats.
Identities = 36/69 (52%), Positives = 50/69 (72%), Gaps = 2/69 (2%)
Query: 22 QPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAAFLKIA 81
+PDPD IKMF GQIPR+M EA+L MF ++G V+ +NVLRDK TG+SKG F + +
Sbjct: 31 EPDPDAIKMFCGQIPRNMHEAELRDMFEQFGPVFQLNVLRDKQTGESKGCCFVTFYSR-- 88
Query: 82 RAAIEPQKA 90
++A++ Q A
Sbjct: 89 KSALDAQNA 97
Score = 40.0 bits (92), Expect = 0.19, Method: Composition-based stats.
Identities = 17/45 (37%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 29 KMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
K+FVG + +++DE ++ +F YG + + VLRD G+S+G F
Sbjct: 125 KLFVGMVSKNLDEPNIRSLFQSYGTIEDCTVLRD-ANGKSRGCAF 168
Score = 38.9 bits (89), Expect = 0.36, Method: Composition-based stats.
Identities = 15/45 (33%), Positives = 27/45 (60%)
Query: 25 PDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSK 69
PD +F+ +P+ ++ DL + F+ YG++ + V DK T +SK
Sbjct: 478 PDGANLFIYHLPQEYNDTDLAQAFASYGQIISAKVFVDKTTNRSK 522
>gi|357607194|gb|EHJ65383.1| hypothetical protein KGM_10442 [Danaus plexippus]
Length = 76
Score = 77.0 bits (188), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 37/61 (60%), Positives = 45/61 (73%), Gaps = 2/61 (3%)
Query: 30 MFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAAFLKIARAAIEPQK 89
MFVGQ+PRSMDE DL MF E+GRV+ INVLRDK+TG SKG F F + +AA++ Q
Sbjct: 1 MFVGQVPRSMDENDLRLMFEEFGRVHQINVLRDKITGASKGCCFVTFFTR--KAALKAQD 58
Query: 90 A 90
A
Sbjct: 59 A 59
>gi|345485141|ref|XP_001605146.2| PREDICTED: CUGBP Elav-like family member 2 [Nasonia vitripennis]
Length = 733
Score = 77.0 bits (188), Expect = 1e-12, Method: Composition-based stats.
Identities = 34/50 (68%), Positives = 41/50 (82%)
Query: 21 EQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKG 70
E+PDPD IKMFVGQ+P+ +DE DL +F E+GRV+ INVLRDK TG SKG
Sbjct: 194 EKPDPDNIKMFVGQVPKDLDENDLRTIFEEFGRVHQINVLRDKYTGSSKG 243
Score = 36.6 bits (83), Expect = 1.9, Method: Composition-based stats.
Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Query: 29 KMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
K+FVG + + E D+ MF YG + +VLR+ GQSKG F
Sbjct: 291 KLFVGMLSKKFTENDVRNMFDVYGEIEECSVLRE--NGQSKGCAF 333
>gi|148228597|ref|NP_001084196.1| CUGBP Elav-like family member 1-A [Xenopus laevis]
gi|82227733|sp|O57406.1|CEL1A_XENLA RecName: Full=CUGBP Elav-like family member 1-A; Short=CELF-1A;
AltName: Full=Bruno-like protein 2-A; AltName: Full=CUG
triplet repeat RNA-binding protein 1-A;
Short=CUG-BP1-A; AltName: Full=CUG-BP- and ETR-3-like
factor 1-A; AltName: Full=Embryo deadenylation
element-binding protein A; Short=EDEN-BP-A; AltName:
Full=RNA-binding protein BRUNOL-2-A; AltName:
Full=p53/p55
gi|2781419|gb|AAC41243.1| embryo deadenylation element binding protein [Xenopus laevis]
gi|80478529|gb|AAI08575.1| CUGBP1 protein [Xenopus laevis]
Length = 489
Score = 76.6 bits (187), Expect = 2e-12, Method: Composition-based stats.
Identities = 39/77 (50%), Positives = 51/77 (66%), Gaps = 4/77 (5%)
Query: 16 SMSLPEQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTG--QSKGKIF 73
+M P+ PDPD IKMFVGQ+PRS E +L ++F +YG VY INVLRD+ QSKG F
Sbjct: 4 TMDHPDHPDPDSIKMFVGQVPRSWSEKELRELFEQYGAVYEINVLRDRSQNPPQSKGCCF 63
Query: 74 EAAFLKIARAAIEPQKA 90
+ + +AA+E Q A
Sbjct: 64 ITFYTR--KAALEAQNA 78
>gi|390344759|ref|XP_782270.3| PREDICTED: CUGBP Elav-like family member 1-A-like
[Strongylocentrotus purpuratus]
Length = 605
Score = 76.6 bits (187), Expect = 2e-12, Method: Composition-based stats.
Identities = 34/52 (65%), Positives = 42/52 (80%)
Query: 22 QPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
QPDPD +KMFVGQIP++ +E L +MFSE+G VY +NVLRDK TG+SKG F
Sbjct: 51 QPDPDSLKMFVGQIPKAYEEDKLREMFSEFGPVYELNVLRDKKTGESKGCAF 102
Score = 38.9 bits (89), Expect = 0.36, Method: Composition-based stats.
Identities = 18/45 (40%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 29 KMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
K+FVG + + DE+D+ MFS +G + ++LRD++ G KG F
Sbjct: 144 KLFVGMLSKKCDESDVRIMFSAFGSIEECHILRDQMGGH-KGCAF 187
Score = 35.8 bits (81), Expect = 3.8, Method: Composition-based stats.
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Query: 21 EQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAAFL 78
++ P+ +F+ +P+ + DL MFS YG + + V DK T S K FE + L
Sbjct: 541 QKEGPEGANLFIYHLPQDYTDTDLISMFSPYGGILSAKVFIDKNTNLS--KCFERSIL 596
>gi|62857945|ref|NP_001017152.1| CUGBP Elav-like family member 1 [Xenopus (Silurana) tropicalis]
gi|123910258|sp|Q28HE9.1|CELF1_XENTR RecName: Full=CUGBP Elav-like family member 1; Short=CELF-1;
AltName: Full=Bruno-like protein 2; AltName: Full=CUG
triplet repeat RNA-binding protein 1; Short=CUG-BP1;
AltName: Full=CUG-BP- and ETR-3-like factor 1; AltName:
Full=RNA-binding protein BRUNOL-2
gi|89272922|emb|CAJ82289.1| CUG triplet repeat, RNA binding protein 1 [Xenopus (Silurana)
tropicalis]
Length = 490
Score = 76.3 bits (186), Expect = 2e-12, Method: Composition-based stats.
Identities = 39/77 (50%), Positives = 51/77 (66%), Gaps = 4/77 (5%)
Query: 16 SMSLPEQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTG--QSKGKIF 73
+M P+ PDPD IKMFVGQ+PRS E +L ++F +YG VY INVLRD+ QSKG F
Sbjct: 4 TMDHPDHPDPDSIKMFVGQVPRSWSEKELRELFEQYGAVYEINVLRDRSQNPPQSKGCCF 63
Query: 74 EAAFLKIARAAIEPQKA 90
+ + +AA+E Q A
Sbjct: 64 ITFYTR--KAALEAQNA 78
Score = 34.7 bits (78), Expect = 7.9, Method: Composition-based stats.
Identities = 16/45 (35%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Query: 29 KMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
K+FVG + + +E D+ MFS++G++ +LR G S+G F
Sbjct: 109 KLFVGMVSKKCNENDIRAMFSQFGQIEESRILRGP-DGMSRGCAF 152
>gi|268533976|ref|XP_002632118.1| C. briggsae CBR-ETR-1 protein [Caenorhabditis briggsae]
Length = 574
Score = 76.3 bits (186), Expect = 3e-12, Method: Composition-based stats.
Identities = 37/71 (52%), Positives = 46/71 (64%), Gaps = 2/71 (2%)
Query: 20 PEQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAAFLK 79
P +PD D IKMFVGQIPR +E D ++F +YG VY+ N+LRDK T SKG F F +
Sbjct: 44 PSEPDSDAIKMFVGQIPRQWNEVDCRRLFEQYGSVYSCNILRDKSTQTSKGCCFVTFFHR 103
Query: 80 IARAAIEPQKA 90
+ AIE Q A
Sbjct: 104 --KDAIEAQGA 112
Score = 38.5 bits (88), Expect = 0.55, Method: Composition-based stats.
Identities = 16/45 (35%), Positives = 32/45 (71%), Gaps = 1/45 (2%)
Query: 29 KMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
K+F+GQ+ + +E +L ++F+++G + + +VLRD G+S+G F
Sbjct: 140 KLFIGQLSKKHNEENLREIFAKFGLIEDCSVLRDN-DGKSRGCAF 183
Score = 36.6 bits (83), Expect = 1.9, Method: Composition-based stats.
Identities = 15/45 (33%), Positives = 25/45 (55%)
Query: 25 PDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSK 69
PD +F+ +P+ + DL F+ +G++ + V DKVT SK
Sbjct: 486 PDGANLFIYHLPQDFGDTDLINTFAPFGQILSAKVFIDKVTNLSK 530
>gi|440904320|gb|ELR54847.1| CUGBP Elav-like family member 2, partial [Bos grunniens mutus]
Length = 519
Score = 75.9 bits (185), Expect = 3e-12, Method: Composition-based stats.
Identities = 39/72 (54%), Positives = 48/72 (66%), Gaps = 4/72 (5%)
Query: 21 EQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTG--QSKGKIFEAAFL 78
+QPDPD IKMFVGQIPRS E +L ++F YG VY INVLRD+ QSKG F +
Sbjct: 15 DQPDPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYT 74
Query: 79 KIARAAIEPQKA 90
+ +AA+E Q A
Sbjct: 75 R--KAALEAQNA 84
>gi|148695568|gb|EDL27515.1| CUG triplet repeat, RNA binding protein 1, isoform CRA_d [Mus
musculus]
gi|148695569|gb|EDL27516.1| CUG triplet repeat, RNA binding protein 1, isoform CRA_d [Mus
musculus]
Length = 499
Score = 75.5 bits (184), Expect = 4e-12, Method: Composition-based stats.
Identities = 38/84 (45%), Positives = 54/84 (64%), Gaps = 4/84 (4%)
Query: 9 CTYEYVRSMSLPEQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTG-- 66
C+ + ++ P+QPD D IKMFVGQ+PR+ E DL ++F +YG VY IN+LRD+
Sbjct: 10 CSKKMNGTLDHPDQPDLDAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINILRDRSQNPP 69
Query: 67 QSKGKIFEAAFLKIARAAIEPQKA 90
QSKG F + + +AA+E Q A
Sbjct: 70 QSKGCCFVTFYTR--KAALEAQNA 91
>gi|431917652|gb|ELK16917.1| CUG-BP- and ETR-3-like factor 2 [Pteropus alecto]
Length = 443
Score = 75.5 bits (184), Expect = 4e-12, Method: Composition-based stats.
Identities = 39/72 (54%), Positives = 48/72 (66%), Gaps = 4/72 (5%)
Query: 21 EQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTG--QSKGKIFEAAFL 78
+QPDPD IKMFVGQIPRS E +L ++F YG VY INVLRD+ QSKG F +
Sbjct: 9 DQPDPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYT 68
Query: 79 KIARAAIEPQKA 90
+ +AA+E Q A
Sbjct: 69 R--KAALEAQNA 78
>gi|426241648|ref|XP_004014701.1| PREDICTED: LOW QUALITY PROTEIN: CUGBP Elav-like family member 2
[Ovis aries]
Length = 551
Score = 75.5 bits (184), Expect = 4e-12, Method: Composition-based stats.
Identities = 39/72 (54%), Positives = 48/72 (66%), Gaps = 4/72 (5%)
Query: 21 EQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTG--QSKGKIFEAAFL 78
+QPDPD IKMFVGQIPRS E +L ++F YG VY INVLRD+ QSKG F +
Sbjct: 83 DQPDPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYT 142
Query: 79 KIARAAIEPQKA 90
+ +AA+E Q A
Sbjct: 143 R--KAALEAQNA 152
>gi|55729085|emb|CAH91279.1| hypothetical protein [Pongo abelii]
Length = 360
Score = 75.1 bits (183), Expect = 4e-12, Method: Composition-based stats.
Identities = 39/72 (54%), Positives = 48/72 (66%), Gaps = 4/72 (5%)
Query: 21 EQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTG--QSKGKIFEAAFL 78
+QPDPD IKMFVGQIPRS E +L ++F YG VY INVLRD+ QSKG F +
Sbjct: 33 DQPDPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYT 92
Query: 79 KIARAAIEPQKA 90
+ +AA+E Q A
Sbjct: 93 R--KAALEAQNA 102
>gi|197100912|ref|NP_001126925.1| CUGBP Elav-like family member 2 isoform 2 [Pongo abelii]
gi|55733179|emb|CAH93273.1| hypothetical protein [Pongo abelii]
Length = 484
Score = 75.1 bits (183), Expect = 5e-12, Method: Composition-based stats.
Identities = 39/72 (54%), Positives = 49/72 (68%), Gaps = 4/72 (5%)
Query: 21 EQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTG--QSKGKIFEAAFL 78
+QPDPD IKMFVGQIPRS E +L ++F YG VY INVLRD+ QSKG F + +
Sbjct: 9 DQPDPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVSFYT 68
Query: 79 KIARAAIEPQKA 90
+ +AA+E Q A
Sbjct: 69 R--KAALEAQNA 78
>gi|327259665|ref|XP_003214656.1| PREDICTED: CUGBP Elav-like family member 1-like [Anolis
carolinensis]
Length = 514
Score = 75.1 bits (183), Expect = 5e-12, Method: Composition-based stats.
Identities = 39/77 (50%), Positives = 51/77 (66%), Gaps = 4/77 (5%)
Query: 16 SMSLPEQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTG--QSKGKIF 73
++ P+QPD D IKMFVGQ+PRS E DL ++F +YG VY INVLRD+ QSKG F
Sbjct: 31 TLDHPDQPDIDAIKMFVGQVPRSWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCF 90
Query: 74 EAAFLKIARAAIEPQKA 90
+ + +AA+E Q A
Sbjct: 91 VTFYTR--KAALEAQNA 105
>gi|395543757|ref|XP_003773780.1| PREDICTED: CUGBP Elav-like family member 1 [Sarcophilus harrisii]
Length = 513
Score = 75.1 bits (183), Expect = 5e-12, Method: Composition-based stats.
Identities = 39/77 (50%), Positives = 51/77 (66%), Gaps = 4/77 (5%)
Query: 16 SMSLPEQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTG--QSKGKIF 73
++ P+QPD D IKMFVGQ+PRS E DL ++F +YG VY INVLRD+ QSKG F
Sbjct: 31 TLDHPDQPDLDAIKMFVGQVPRSWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCF 90
Query: 74 EAAFLKIARAAIEPQKA 90
+ + +AA+E Q A
Sbjct: 91 VTFYTR--KAALEAQNA 105
>gi|296206140|ref|XP_002750082.1| PREDICTED: CUGBP Elav-like family member 2 [Callithrix jacchus]
Length = 531
Score = 75.1 bits (183), Expect = 5e-12, Method: Composition-based stats.
Identities = 39/72 (54%), Positives = 48/72 (66%), Gaps = 4/72 (5%)
Query: 21 EQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTG--QSKGKIFEAAFL 78
+QPDPD IKMFVGQIPRS E +L ++F YG VY INVLRD+ QSKG F +
Sbjct: 52 DQPDPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYT 111
Query: 79 KIARAAIEPQKA 90
+ +AA+E Q A
Sbjct: 112 R--KAALEAQNA 121
>gi|410045110|ref|XP_003313076.2| PREDICTED: CUGBP Elav-like family member 1 [Pan troglodytes]
Length = 461
Score = 75.1 bits (183), Expect = 5e-12, Method: Composition-based stats.
Identities = 38/77 (49%), Positives = 51/77 (66%), Gaps = 4/77 (5%)
Query: 16 SMSLPEQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTG--QSKGKIF 73
++ P+QPD D IKMFVGQ+PR+ E DL ++F +YG VY INVLRD+ QSKG F
Sbjct: 31 TLDHPDQPDLDAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCF 90
Query: 74 EAAFLKIARAAIEPQKA 90
+ + +AA+E Q A
Sbjct: 91 VTFYTR--KAALEAQNA 105
Score = 34.7 bits (78), Expect = 7.1, Method: Composition-based stats.
Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 29 KMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKI 72
K+F+G I + E D+ MFS +G++ +LR G S+GK+
Sbjct: 136 KLFIGMISKKCTENDIRVMFSSFGQIEECRILRGP-DGLSRGKV 178
>gi|334331817|ref|XP_001364287.2| PREDICTED: CUGBP Elav-like family member 1-like [Monodelphis
domestica]
Length = 512
Score = 75.1 bits (183), Expect = 5e-12, Method: Composition-based stats.
Identities = 39/77 (50%), Positives = 51/77 (66%), Gaps = 4/77 (5%)
Query: 16 SMSLPEQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTG--QSKGKIF 73
++ P+QPD D IKMFVGQ+PRS E DL ++F +YG VY INVLRD+ QSKG F
Sbjct: 31 TLDHPDQPDLDSIKMFVGQVPRSWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCF 90
Query: 74 EAAFLKIARAAIEPQKA 90
+ + +AA+E Q A
Sbjct: 91 VTFYTR--KAALEAQNA 105
>gi|74142177|dbj|BAE31857.1| unnamed protein product [Mus musculus]
Length = 495
Score = 75.1 bits (183), Expect = 5e-12, Method: Composition-based stats.
Identities = 39/72 (54%), Positives = 48/72 (66%), Gaps = 4/72 (5%)
Query: 21 EQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTG--QSKGKIFEAAFL 78
+QPDPD IKMFVGQIPRS E +L ++F YG VY INVLRD+ QSKG F +
Sbjct: 16 DQPDPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYT 75
Query: 79 KIARAAIEPQKA 90
+ +AA+E Q A
Sbjct: 76 R--KAALEAQNA 85
>gi|327272094|ref|XP_003220821.1| PREDICTED: CUGBP Elav-like family member 2-like isoform 2 [Anolis
carolinensis]
Length = 488
Score = 75.1 bits (183), Expect = 5e-12, Method: Composition-based stats.
Identities = 39/72 (54%), Positives = 48/72 (66%), Gaps = 4/72 (5%)
Query: 21 EQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTG--QSKGKIFEAAFL 78
+QPDPD IKMFVGQIPRS E +L ++F YG VY INVLRD+ QSKG F +
Sbjct: 9 DQPDPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYT 68
Query: 79 KIARAAIEPQKA 90
+ +AA+E Q A
Sbjct: 69 R--KAALEAQNA 78
>gi|74198996|dbj|BAE30715.1| unnamed protein product [Mus musculus]
Length = 488
Score = 75.1 bits (183), Expect = 5e-12, Method: Composition-based stats.
Identities = 39/72 (54%), Positives = 48/72 (66%), Gaps = 4/72 (5%)
Query: 21 EQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTG--QSKGKIFEAAFL 78
+QPDPD IKMFVGQIPRS E +L ++F YG VY INVLRD+ QSKG F +
Sbjct: 9 DQPDPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYT 68
Query: 79 KIARAAIEPQKA 90
+ +AA+E Q A
Sbjct: 69 R--KAALEAQNA 78
>gi|395827353|ref|XP_003786869.1| PREDICTED: CUGBP Elav-like family member 2 isoform 4 [Otolemur
garnettii]
Length = 488
Score = 75.1 bits (183), Expect = 5e-12, Method: Composition-based stats.
Identities = 39/72 (54%), Positives = 48/72 (66%), Gaps = 4/72 (5%)
Query: 21 EQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTG--QSKGKIFEAAFL 78
+QPDPD IKMFVGQIPRS E +L ++F YG VY INVLRD+ QSKG F +
Sbjct: 9 DQPDPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYT 68
Query: 79 KIARAAIEPQKA 90
+ +AA+E Q A
Sbjct: 69 R--KAALEAQNA 78
>gi|194375526|dbj|BAG56708.1| unnamed protein product [Homo sapiens]
Length = 496
Score = 75.1 bits (183), Expect = 5e-12, Method: Composition-based stats.
Identities = 39/72 (54%), Positives = 48/72 (66%), Gaps = 4/72 (5%)
Query: 21 EQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTG--QSKGKIFEAAFL 78
+QPDPD IKMFVGQIPRS E +L ++F YG VY INVLRD+ QSKG F +
Sbjct: 17 DQPDPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYT 76
Query: 79 KIARAAIEPQKA 90
+ +AA+E Q A
Sbjct: 77 R--KAALEAQNA 86
>gi|197099692|ref|NP_001125976.1| CUGBP Elav-like family member 1 [Pongo abelii]
gi|75070672|sp|Q5R995.1|CELF1_PONAB RecName: Full=CUGBP Elav-like family member 1; Short=CELF-1;
AltName: Full=Bruno-like protein 2; AltName: Full=CUG
triplet repeat RNA-binding protein 1; Short=CUG-BP1;
AltName: Full=CUG-BP- and ETR-3-like factor 1; AltName:
Full=RNA-binding protein BRUNOL-2
gi|55729876|emb|CAH91665.1| hypothetical protein [Pongo abelii]
Length = 513
Score = 75.1 bits (183), Expect = 5e-12, Method: Composition-based stats.
Identities = 38/77 (49%), Positives = 51/77 (66%), Gaps = 4/77 (5%)
Query: 16 SMSLPEQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTG--QSKGKIF 73
++ P+QPD D IKMFVGQ+PR+ E DL ++F +YG VY INVLRD+ QSKG F
Sbjct: 31 TLDHPDQPDLDAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCF 90
Query: 74 EAAFLKIARAAIEPQKA 90
+ + +AA+E Q A
Sbjct: 91 VTFYTR--KAALEAQNA 105
>gi|449480621|ref|XP_002190740.2| PREDICTED: CUGBP Elav-like family member 2 [Taeniopygia guttata]
Length = 490
Score = 75.1 bits (183), Expect = 6e-12, Method: Composition-based stats.
Identities = 39/72 (54%), Positives = 48/72 (66%), Gaps = 4/72 (5%)
Query: 21 EQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTG--QSKGKIFEAAFL 78
+QPDPD IKMFVGQIPRS E +L ++F YG VY INVLRD+ QSKG F +
Sbjct: 9 DQPDPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYT 68
Query: 79 KIARAAIEPQKA 90
+ +AA+E Q A
Sbjct: 69 R--KAALEAQNA 78
>gi|441625924|ref|XP_003257673.2| PREDICTED: CUGBP Elav-like family member 2 isoform 1 [Nomascus
leucogenys]
Length = 523
Score = 75.1 bits (183), Expect = 6e-12, Method: Composition-based stats.
Identities = 39/72 (54%), Positives = 48/72 (66%), Gaps = 4/72 (5%)
Query: 21 EQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTG--QSKGKIFEAAFL 78
+QPDPD IKMFVGQIPRS E +L ++F YG VY INVLRD+ QSKG F +
Sbjct: 45 DQPDPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYT 104
Query: 79 KIARAAIEPQKA 90
+ +AA+E Q A
Sbjct: 105 R--KAALEAQNA 114
>gi|74220804|dbj|BAE31371.1| unnamed protein product [Mus musculus]
Length = 440
Score = 75.1 bits (183), Expect = 6e-12, Method: Composition-based stats.
Identities = 39/72 (54%), Positives = 48/72 (66%), Gaps = 4/72 (5%)
Query: 21 EQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTG--QSKGKIFEAAFL 78
+QPDPD IKMFVGQIPRS E +L ++F YG VY INVLRD+ QSKG F +
Sbjct: 9 DQPDPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYT 68
Query: 79 KIARAAIEPQKA 90
+ +AA+E Q A
Sbjct: 69 R--KAALEAQNA 78
>gi|344239315|gb|EGV95418.1| CUG-BP- and ETR-3-like factor 2 [Cricetulus griseus]
Length = 508
Score = 75.1 bits (183), Expect = 6e-12, Method: Composition-based stats.
Identities = 39/72 (54%), Positives = 48/72 (66%), Gaps = 4/72 (5%)
Query: 21 EQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTG--QSKGKIFEAAFL 78
+QPDPD IKMFVGQIPRS E +L ++F YG VY INVLRD+ QSKG F +
Sbjct: 33 DQPDPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYT 92
Query: 79 KIARAAIEPQKA 90
+ +AA+E Q A
Sbjct: 93 R--KAALEAQNA 102
>gi|301787201|ref|XP_002929016.1| PREDICTED: CUGBP Elav-like family member 2-like [Ailuropoda
melanoleuca]
Length = 488
Score = 75.1 bits (183), Expect = 6e-12, Method: Composition-based stats.
Identities = 39/72 (54%), Positives = 48/72 (66%), Gaps = 4/72 (5%)
Query: 21 EQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTG--QSKGKIFEAAFL 78
+QPDPD IKMFVGQIPRS E +L ++F YG VY INVLRD+ QSKG F +
Sbjct: 9 DQPDPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYT 68
Query: 79 KIARAAIEPQKA 90
+ +AA+E Q A
Sbjct: 69 R--KAALEAQNA 78
>gi|444707599|gb|ELW48864.1| CUGBP Elav-like family member 1 [Tupaia chinensis]
Length = 487
Score = 75.1 bits (183), Expect = 6e-12, Method: Composition-based stats.
Identities = 38/77 (49%), Positives = 51/77 (66%), Gaps = 4/77 (5%)
Query: 16 SMSLPEQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTG--QSKGKIF 73
++ P+QPD D IKMFVGQ+PR+ E DL ++F +YG VY INVLRD+ QSKG F
Sbjct: 4 TLDHPDQPDLDAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCF 63
Query: 74 EAAFLKIARAAIEPQKA 90
+ + +AA+E Q A
Sbjct: 64 VTFYTR--KAALEAQNA 78
>gi|1568643|gb|AAB09040.1| RNA-binding protein BRUNOL3 [Homo sapiens]
Length = 490
Score = 74.7 bits (182), Expect = 6e-12, Method: Composition-based stats.
Identities = 39/72 (54%), Positives = 48/72 (66%), Gaps = 4/72 (5%)
Query: 21 EQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTG--QSKGKIFEAAFL 78
+QPDPD IKMFVGQIPRS E +L ++F YG VY INVLRD+ QSKG F +
Sbjct: 9 DQPDPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYT 68
Query: 79 KIARAAIEPQKA 90
+ +AA+E Q A
Sbjct: 69 R--KAALEAQNA 78
>gi|159032033|ref|NP_001103699.1| CUGBP Elav-like family member 2 isoform 2 [Mus musculus]
gi|74209492|dbj|BAE23295.1| unnamed protein product [Mus musculus]
Length = 524
Score = 74.7 bits (182), Expect = 6e-12, Method: Composition-based stats.
Identities = 39/72 (54%), Positives = 48/72 (66%), Gaps = 4/72 (5%)
Query: 21 EQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTG--QSKGKIFEAAFL 78
+QPDPD IKMFVGQIPRS E +L ++F YG VY INVLRD+ QSKG F +
Sbjct: 45 DQPDPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYT 104
Query: 79 KIARAAIEPQKA 90
+ +AA+E Q A
Sbjct: 105 R--KAALEAQNA 114
>gi|410963193|ref|XP_003988150.1| PREDICTED: CUGBP Elav-like family member 2 isoform 2 [Felis
catus]
Length = 496
Score = 74.7 bits (182), Expect = 6e-12, Method: Composition-based stats.
Identities = 39/72 (54%), Positives = 48/72 (66%), Gaps = 4/72 (5%)
Query: 21 EQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTG--QSKGKIFEAAFL 78
+QPDPD IKMFVGQIPRS E +L ++F YG VY INVLRD+ QSKG F +
Sbjct: 17 DQPDPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYT 76
Query: 79 KIARAAIEPQKA 90
+ +AA+E Q A
Sbjct: 77 R--KAALEAQNA 86
>gi|395827349|ref|XP_003786867.1| PREDICTED: CUGBP Elav-like family member 2 isoform 2 [Otolemur
garnettii]
Length = 490
Score = 74.7 bits (182), Expect = 6e-12, Method: Composition-based stats.
Identities = 39/72 (54%), Positives = 48/72 (66%), Gaps = 4/72 (5%)
Query: 21 EQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTG--QSKGKIFEAAFL 78
+QPDPD IKMFVGQIPRS E +L ++F YG VY INVLRD+ QSKG F +
Sbjct: 9 DQPDPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYT 68
Query: 79 KIARAAIEPQKA 90
+ +AA+E Q A
Sbjct: 69 R--KAALEAQNA 78
>gi|351703688|gb|EHB06607.1| CUG-BP- and ETR-3-like factor 2, partial [Heterocephalus glaber]
Length = 496
Score = 74.7 bits (182), Expect = 6e-12, Method: Composition-based stats.
Identities = 39/72 (54%), Positives = 48/72 (66%), Gaps = 4/72 (5%)
Query: 21 EQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTG--QSKGKIFEAAFL 78
+QPDPD IKMFVGQIPRS E +L ++F YG VY INVLRD+ QSKG F +
Sbjct: 15 DQPDPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYT 74
Query: 79 KIARAAIEPQKA 90
+ +AA+E Q A
Sbjct: 75 R--KAALEAQNA 84
>gi|327272098|ref|XP_003220823.1| PREDICTED: CUGBP Elav-like family member 2-like isoform 4 [Anolis
carolinensis]
Length = 536
Score = 74.7 bits (182), Expect = 6e-12, Method: Composition-based stats.
Identities = 39/72 (54%), Positives = 48/72 (66%), Gaps = 4/72 (5%)
Query: 21 EQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTG--QSKGKIFEAAFL 78
+QPDPD IKMFVGQIPRS E +L ++F YG VY INVLRD+ QSKG F +
Sbjct: 51 DQPDPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYT 110
Query: 79 KIARAAIEPQKA 90
+ +AA+E Q A
Sbjct: 111 R--KAALEAQNA 120
>gi|237757269|ref|NP_001153764.1| CUGBP Elav-like family member 2 isoform 7 [Mus musculus]
Length = 472
Score = 74.7 bits (182), Expect = 6e-12, Method: Composition-based stats.
Identities = 39/72 (54%), Positives = 48/72 (66%), Gaps = 4/72 (5%)
Query: 21 EQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTG--QSKGKIFEAAFL 78
+QPDPD IKMFVGQIPRS E +L ++F YG VY INVLRD+ QSKG F +
Sbjct: 45 DQPDPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYT 104
Query: 79 KIARAAIEPQKA 90
+ +AA+E Q A
Sbjct: 105 R--KAALEAQNA 114
>gi|134152719|ref|NP_001077060.1| CUGBP Elav-like family member 2 isoform 4 [Homo sapiens]
gi|332833595|ref|XP_003312502.1| PREDICTED: CUGBP, Elav-like family member 2 isoform 2 [Pan
troglodytes]
gi|397515226|ref|XP_003827857.1| PREDICTED: CUGBP Elav-like family member 2 isoform 3 [Pan
paniscus]
gi|403278085|ref|XP_003930659.1| PREDICTED: CUGBP Elav-like family member 2 isoform 2 [Saimiri
boliviensis boliviensis]
gi|16660677|gb|AAL27627.1|AF432906_1 neuroblastoma apoptosis-related RNA-binding protein isoform 4
[Homo sapiens]
gi|119606752|gb|EAW86346.1| CUG triplet repeat, RNA binding protein 2, isoform CRA_a [Homo
sapiens]
gi|221046096|dbj|BAH14725.1| unnamed protein product [Homo sapiens]
gi|410263774|gb|JAA19853.1| CUGBP, Elav-like family member 2 [Pan troglodytes]
Length = 488
Score = 74.7 bits (182), Expect = 6e-12, Method: Composition-based stats.
Identities = 39/72 (54%), Positives = 48/72 (66%), Gaps = 4/72 (5%)
Query: 21 EQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTG--QSKGKIFEAAFL 78
+QPDPD IKMFVGQIPRS E +L ++F YG VY INVLRD+ QSKG F +
Sbjct: 9 DQPDPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYT 68
Query: 79 KIARAAIEPQKA 90
+ +AA+E Q A
Sbjct: 69 R--KAALEAQNA 78
>gi|4249668|gb|AAD13761.1| apoptosis-related RNA binding protein [Homo sapiens]
Length = 509
Score = 74.7 bits (182), Expect = 6e-12, Method: Composition-based stats.
Identities = 39/72 (54%), Positives = 48/72 (66%), Gaps = 4/72 (5%)
Query: 21 EQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTG--QSKGKIFEAAFL 78
+QPDPD IKMFVGQIPRS E +L ++F YG VY INVLRD+ QSKG F +
Sbjct: 28 DQPDPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYT 87
Query: 79 KIARAAIEPQKA 90
+ +AA+E Q A
Sbjct: 88 R--KAALEAQNA 97
>gi|327272092|ref|XP_003220820.1| PREDICTED: CUGBP Elav-like family member 2-like isoform 1 [Anolis
carolinensis]
Length = 536
Score = 74.7 bits (182), Expect = 6e-12, Method: Composition-based stats.
Identities = 39/72 (54%), Positives = 48/72 (66%), Gaps = 4/72 (5%)
Query: 21 EQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTG--QSKGKIFEAAFL 78
+QPDPD IKMFVGQIPRS E +L ++F YG VY INVLRD+ QSKG F +
Sbjct: 51 DQPDPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYT 110
Query: 79 KIARAAIEPQKA 90
+ +AA+E Q A
Sbjct: 111 R--KAALEAQNA 120
>gi|55730095|emb|CAH91772.1| hypothetical protein [Pongo abelii]
Length = 519
Score = 74.7 bits (182), Expect = 6e-12, Method: Composition-based stats.
Identities = 39/72 (54%), Positives = 48/72 (66%), Gaps = 4/72 (5%)
Query: 21 EQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTG--QSKGKIFEAAFL 78
+QPDPD IKMFVGQIPRS E +L ++F YG VY INVLRD+ QSKG F +
Sbjct: 33 DQPDPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYT 92
Query: 79 KIARAAIEPQKA 90
+ +AA+E Q A
Sbjct: 93 R--KAALEAQNA 102
>gi|38570081|ref|NP_941989.1| CUGBP Elav-like family member 1 isoform 2 [Homo sapiens]
gi|332259916|ref|XP_003279030.1| PREDICTED: CUGBP Elav-like family member 1 [Nomascus leucogenys]
gi|402893568|ref|XP_003909964.1| PREDICTED: CUGBP Elav-like family member 1 isoform 2 [Papio
anubis]
gi|8745537|gb|AAF78956.1|AF267534_1 CUG-binding protein A isoform [Homo sapiens]
gi|21411010|gb|AAH31079.1| CUG triplet repeat, RNA binding protein 1 [Homo sapiens]
gi|119588317|gb|EAW67911.1| CUG triplet repeat, RNA binding protein 1, isoform CRA_f [Homo
sapiens]
gi|123994083|gb|ABM84643.1| CUG triplet repeat, RNA binding protein 1 [synthetic construct]
Length = 483
Score = 74.7 bits (182), Expect = 6e-12, Method: Composition-based stats.
Identities = 38/77 (49%), Positives = 51/77 (66%), Gaps = 4/77 (5%)
Query: 16 SMSLPEQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTG--QSKGKIF 73
++ P+QPD D IKMFVGQ+PR+ E DL ++F +YG VY INVLRD+ QSKG F
Sbjct: 4 TLDHPDQPDLDAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCF 63
Query: 74 EAAFLKIARAAIEPQKA 90
+ + +AA+E Q A
Sbjct: 64 VTFYTR--KAALEAQNA 78
>gi|5729794|ref|NP_006551.1| CUGBP Elav-like family member 1 isoform 1 [Homo sapiens]
gi|402893570|ref|XP_003909965.1| PREDICTED: CUGBP Elav-like family member 1 isoform 3 [Papio
anubis]
gi|1518802|gb|AAC50895.1| CUG-BP/hNab50 [Homo sapiens]
gi|119588313|gb|EAW67907.1| CUG triplet repeat, RNA binding protein 1, isoform CRA_b [Homo
sapiens]
gi|380783235|gb|AFE63493.1| CUGBP Elav-like family member 1 isoform 1 [Macaca mulatta]
gi|410222890|gb|JAA08664.1| CUGBP, Elav-like family member 1 [Pan troglodytes]
Length = 482
Score = 74.7 bits (182), Expect = 6e-12, Method: Composition-based stats.
Identities = 38/77 (49%), Positives = 51/77 (66%), Gaps = 4/77 (5%)
Query: 16 SMSLPEQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTG--QSKGKIF 73
++ P+QPD D IKMFVGQ+PR+ E DL ++F +YG VY INVLRD+ QSKG F
Sbjct: 4 TLDHPDQPDLDAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCF 63
Query: 74 EAAFLKIARAAIEPQKA 90
+ + +AA+E Q A
Sbjct: 64 VTFYTR--KAALEAQNA 78
>gi|71164871|ref|NP_001020767.1| CUGBP Elav-like family member 1 isoform 3 [Homo sapiens]
gi|17374605|sp|Q92879.2|CELF1_HUMAN RecName: Full=CUGBP Elav-like family member 1; Short=CELF-1;
AltName: Full=50 kDa nuclear polyadenylated RNA-binding
protein; AltName: Full=Bruno-like protein 2; AltName:
Full=CUG triplet repeat RNA-binding protein 1;
Short=CUG-BP1; AltName: Full=CUG-BP- and ETR-3-like
factor 1; AltName: Full=Deadenylation factor CUG-BP;
AltName: Full=Embryo deadenylation element-binding
protein homolog; Short=EDEN-BP homolog; AltName:
Full=RNA-binding protein BRUNOL-2
gi|8745535|gb|AAF78955.1|AF267533_1 CUG-binding protein LYLQ isoform [Homo sapiens]
gi|9246973|gb|AAF86230.1|AF248648_1 RNA-binding protein BRUNOL2 [Homo sapiens]
gi|12053580|emb|CAC20566.1| deadenylation factor CUG-BP [Homo sapiens]
gi|119588315|gb|EAW67909.1| CUG triplet repeat, RNA binding protein 1, isoform CRA_d [Homo
sapiens]
gi|119588318|gb|EAW67912.1| CUG triplet repeat, RNA binding protein 1, isoform CRA_d [Homo
sapiens]
gi|387539216|gb|AFJ70235.1| CUGBP Elav-like family member 1 isoform 3 [Macaca mulatta]
Length = 486
Score = 74.7 bits (182), Expect = 6e-12, Method: Composition-based stats.
Identities = 38/77 (49%), Positives = 51/77 (66%), Gaps = 4/77 (5%)
Query: 16 SMSLPEQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTG--QSKGKIF 73
++ P+QPD D IKMFVGQ+PR+ E DL ++F +YG VY INVLRD+ QSKG F
Sbjct: 4 TLDHPDQPDLDAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCF 63
Query: 74 EAAFLKIARAAIEPQKA 90
+ + +AA+E Q A
Sbjct: 64 VTFYTR--KAALEAQNA 78
>gi|119588312|gb|EAW67906.1| CUG triplet repeat, RNA binding protein 1, isoform CRA_a [Homo
sapiens]
Length = 487
Score = 74.7 bits (182), Expect = 6e-12, Method: Composition-based stats.
Identities = 38/77 (49%), Positives = 51/77 (66%), Gaps = 4/77 (5%)
Query: 16 SMSLPEQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTG--QSKGKIF 73
++ P+QPD D IKMFVGQ+PR+ E DL ++F +YG VY INVLRD+ QSKG F
Sbjct: 4 TLDHPDQPDLDAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCF 63
Query: 74 EAAFLKIARAAIEPQKA 90
+ + +AA+E Q A
Sbjct: 64 VTFYTR--KAALEAQNA 78
>gi|289547568|ref|NP_001166111.1| CUGBP Elav-like family member 1 isoform 5 [Homo sapiens]
Length = 485
Score = 74.7 bits (182), Expect = 6e-12, Method: Composition-based stats.
Identities = 38/77 (49%), Positives = 51/77 (66%), Gaps = 4/77 (5%)
Query: 16 SMSLPEQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTG--QSKGKIF 73
++ P+QPD D IKMFVGQ+PR+ E DL ++F +YG VY INVLRD+ QSKG F
Sbjct: 4 TLDHPDQPDLDAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCF 63
Query: 74 EAAFLKIARAAIEPQKA 90
+ + +AA+E Q A
Sbjct: 64 VTFYTR--KAALEAQNA 78
>gi|159032035|ref|NP_001103700.1| CUGBP Elav-like family member 2 isoform 3 [Mus musculus]
gi|74227938|dbj|BAE37963.1| unnamed protein product [Mus musculus]
Length = 520
Score = 74.7 bits (182), Expect = 6e-12, Method: Composition-based stats.
Identities = 39/72 (54%), Positives = 48/72 (66%), Gaps = 4/72 (5%)
Query: 21 EQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTG--QSKGKIFEAAFL 78
+QPDPD IKMFVGQIPRS E +L ++F YG VY INVLRD+ QSKG F +
Sbjct: 45 DQPDPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYT 104
Query: 79 KIARAAIEPQKA 90
+ +AA+E Q A
Sbjct: 105 R--KAALEAQNA 114
>gi|297300473|ref|XP_002805600.1| PREDICTED: CUGBP Elav-like family member 2-like [Macaca mulatta]
Length = 501
Score = 74.7 bits (182), Expect = 6e-12, Method: Composition-based stats.
Identities = 39/72 (54%), Positives = 48/72 (66%), Gaps = 4/72 (5%)
Query: 21 EQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTG--QSKGKIFEAAFL 78
+QPDPD IKMFVGQIPRS E +L ++F YG VY INVLRD+ QSKG F +
Sbjct: 33 DQPDPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYT 92
Query: 79 KIARAAIEPQKA 90
+ +AA+E Q A
Sbjct: 93 R--KAALEAQNA 102
>gi|194227176|ref|XP_001916706.1| PREDICTED: CUGBP, Elav-like family member 2 isoform 1 [Equus
caballus]
gi|344277695|ref|XP_003410635.1| PREDICTED: CUGBP Elav-like family member 2-like [Loxodonta
africana]
gi|345793487|ref|XP_003433765.1| PREDICTED: CUGBP, Elav-like family member 2 [Canis lupus
familiaris]
Length = 488
Score = 74.7 bits (182), Expect = 6e-12, Method: Composition-based stats.
Identities = 39/72 (54%), Positives = 48/72 (66%), Gaps = 4/72 (5%)
Query: 21 EQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTG--QSKGKIFEAAFL 78
+QPDPD IKMFVGQIPRS E +L ++F YG VY INVLRD+ QSKG F +
Sbjct: 9 DQPDPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYT 68
Query: 79 KIARAAIEPQKA 90
+ +AA+E Q A
Sbjct: 69 R--KAALEAQNA 78
>gi|395815679|ref|XP_003781352.1| PREDICTED: CUGBP Elav-like family member 1 [Otolemur garnettii]
Length = 482
Score = 74.7 bits (182), Expect = 6e-12, Method: Composition-based stats.
Identities = 38/77 (49%), Positives = 51/77 (66%), Gaps = 4/77 (5%)
Query: 16 SMSLPEQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTG--QSKGKIF 73
++ P+QPD D IKMFVGQ+PR+ E DL ++F +YG VY INVLRD+ QSKG F
Sbjct: 4 TLDHPDQPDLDAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCF 63
Query: 74 EAAFLKIARAAIEPQKA 90
+ + +AA+E Q A
Sbjct: 64 VTFYTR--KAALEAQNA 78
>gi|291384970|ref|XP_002709144.1| PREDICTED: CUG triplet repeat, RNA-binding protein 1-like
[Oryctolagus cuniculus]
Length = 483
Score = 74.7 bits (182), Expect = 6e-12, Method: Composition-based stats.
Identities = 38/77 (49%), Positives = 51/77 (66%), Gaps = 4/77 (5%)
Query: 16 SMSLPEQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTG--QSKGKIF 73
++ P+QPD D IKMFVGQ+PR+ E DL ++F +YG VY INVLRD+ QSKG F
Sbjct: 4 TLDHPDQPDLDAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCF 63
Query: 74 EAAFLKIARAAIEPQKA 90
+ + +AA+E Q A
Sbjct: 64 VTFYTR--KAALEAQNA 78
>gi|68303645|ref|NP_001020247.1| CUGBP Elav-like family member 2 isoform 1 [Homo sapiens]
gi|332833597|ref|XP_003312503.1| PREDICTED: CUGBP, Elav-like family member 2 isoform 3 [Pan
troglodytes]
gi|397515224|ref|XP_003827856.1| PREDICTED: CUGBP Elav-like family member 2 isoform 2 [Pan
paniscus]
gi|403278087|ref|XP_003930660.1| PREDICTED: CUGBP Elav-like family member 2 isoform 3 [Saimiri
boliviensis boliviensis]
gi|4104559|gb|AAD02074.1| neuroblastoma apoptosis-related RNA binding protein [Homo
sapiens]
gi|15217394|gb|AAK92699.1| neuroplastoma apoptosis-related RNA-binding protein 1 [Homo
sapiens]
gi|119606754|gb|EAW86348.1| CUG triplet repeat, RNA binding protein 2, isoform CRA_c [Homo
sapiens]
Length = 490
Score = 74.7 bits (182), Expect = 6e-12, Method: Composition-based stats.
Identities = 39/72 (54%), Positives = 48/72 (66%), Gaps = 4/72 (5%)
Query: 21 EQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTG--QSKGKIFEAAFL 78
+QPDPD IKMFVGQIPRS E +L ++F YG VY INVLRD+ QSKG F +
Sbjct: 9 DQPDPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYT 68
Query: 79 KIARAAIEPQKA 90
+ +AA+E Q A
Sbjct: 69 R--KAALEAQNA 78
>gi|343961815|dbj|BAK62495.1| CUG triplet repeat RNA-binding protein 1 [Pan troglodytes]
Length = 483
Score = 74.7 bits (182), Expect = 6e-12, Method: Composition-based stats.
Identities = 38/77 (49%), Positives = 51/77 (66%), Gaps = 4/77 (5%)
Query: 16 SMSLPEQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTG--QSKGKIF 73
++ P+QPD D IKMFVGQ+PR+ E DL ++F +YG VY INVLRD+ QSKG F
Sbjct: 4 TLDHPDQPDLDAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCF 63
Query: 74 EAAFLKIARAAIEPQKA 90
+ + +AA+E Q A
Sbjct: 64 VTFYTR--KAALEAQNA 78
>gi|338712050|ref|XP_003362651.1| PREDICTED: CUGBP, Elav-like family member 1 isoform 3 [Equus
caballus]
gi|410973719|ref|XP_003993295.1| PREDICTED: CUGBP Elav-like family member 1 isoform 2 [Felis
catus]
Length = 486
Score = 74.7 bits (182), Expect = 6e-12, Method: Composition-based stats.
Identities = 38/77 (49%), Positives = 51/77 (66%), Gaps = 4/77 (5%)
Query: 16 SMSLPEQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTG--QSKGKIF 73
++ P+QPD D IKMFVGQ+PR+ E DL ++F +YG VY INVLRD+ QSKG F
Sbjct: 4 TLDHPDQPDLDAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCF 63
Query: 74 EAAFLKIARAAIEPQKA 90
+ + +AA+E Q A
Sbjct: 64 VTFYTR--KAALEAQNA 78
>gi|194217895|ref|XP_001492139.2| PREDICTED: CUGBP, Elav-like family member 1 isoform 1 [Equus
caballus]
gi|345783918|ref|XP_533186.3| PREDICTED: CUGBP, Elav-like family member 1 isoform 1 [Canis
lupus familiaris]
gi|410973721|ref|XP_003993296.1| PREDICTED: CUGBP Elav-like family member 1 isoform 3 [Felis
catus]
Length = 482
Score = 74.7 bits (182), Expect = 6e-12, Method: Composition-based stats.
Identities = 38/77 (49%), Positives = 51/77 (66%), Gaps = 4/77 (5%)
Query: 16 SMSLPEQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTG--QSKGKIF 73
++ P+QPD D IKMFVGQ+PR+ E DL ++F +YG VY INVLRD+ QSKG F
Sbjct: 4 TLDHPDQPDLDAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCF 63
Query: 74 EAAFLKIARAAIEPQKA 90
+ + +AA+E Q A
Sbjct: 64 VTFYTR--KAALEAQNA 78
>gi|159032037|ref|NP_001103701.1| CUGBP Elav-like family member 2 isoform 4 [Mus musculus]
gi|3452501|emb|CAA09102.1| ETR-R3a protein [Rattus norvegicus]
gi|74144402|dbj|BAE36053.1| unnamed protein product [Mus musculus]
Length = 490
Score = 74.7 bits (182), Expect = 6e-12, Method: Composition-based stats.
Identities = 39/72 (54%), Positives = 48/72 (66%), Gaps = 4/72 (5%)
Query: 21 EQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTG--QSKGKIFEAAFL 78
+QPDPD IKMFVGQIPRS E +L ++F YG VY INVLRD+ QSKG F +
Sbjct: 9 DQPDPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYT 68
Query: 79 KIARAAIEPQKA 90
+ +AA+E Q A
Sbjct: 69 R--KAALEAQNA 78
>gi|417411512|gb|JAA52190.1| Putative rna-binding protein etr-3 rrm superfamily, partial
[Desmodus rotundus]
Length = 541
Score = 74.7 bits (182), Expect = 6e-12, Method: Composition-based stats.
Identities = 38/77 (49%), Positives = 51/77 (66%), Gaps = 4/77 (5%)
Query: 16 SMSLPEQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTG--QSKGKIF 73
++ P+QPD D IKMFVGQ+PR+ E DL ++F +YG VY INVLRD+ QSKG F
Sbjct: 59 TLDHPDQPDLDAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCF 118
Query: 74 EAAFLKIARAAIEPQKA 90
+ + +AA+E Q A
Sbjct: 119 VTFYTR--KAALEAQNA 133
>gi|383415259|gb|AFH30843.1| CUGBP Elav-like family member 2 isoform 4 [Macaca mulatta]
Length = 488
Score = 74.7 bits (182), Expect = 6e-12, Method: Composition-based stats.
Identities = 39/72 (54%), Positives = 48/72 (66%), Gaps = 4/72 (5%)
Query: 21 EQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTG--QSKGKIFEAAFL 78
+QPDPD IKMFVGQIPRS E +L ++F YG VY INVLRD+ QSKG F +
Sbjct: 9 DQPDPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYT 68
Query: 79 KIARAAIEPQKA 90
+ +AA+E Q A
Sbjct: 69 R--KAALEAQNA 78
>gi|355677605|gb|AER96037.1| CUG triplet repeat, RNA binding protein 1 [Mustela putorius furo]
Length = 540
Score = 74.7 bits (182), Expect = 6e-12, Method: Composition-based stats.
Identities = 38/77 (49%), Positives = 51/77 (66%), Gaps = 4/77 (5%)
Query: 16 SMSLPEQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTG--QSKGKIF 73
++ P+QPD D IKMFVGQ+PR+ E DL ++F +YG VY INVLRD+ QSKG F
Sbjct: 59 TLDHPDQPDLDAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCF 118
Query: 74 EAAFLKIARAAIEPQKA 90
+ + +AA+E Q A
Sbjct: 119 VTFYTR--KAALEAQNA 133
>gi|354467968|ref|XP_003496439.1| PREDICTED: CUGBP Elav-like family member 2-like isoform 1
[Cricetulus griseus]
Length = 520
Score = 74.7 bits (182), Expect = 6e-12, Method: Composition-based stats.
Identities = 39/72 (54%), Positives = 48/72 (66%), Gaps = 4/72 (5%)
Query: 21 EQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTG--QSKGKIFEAAFL 78
+QPDPD IKMFVGQIPRS E +L ++F YG VY INVLRD+ QSKG F +
Sbjct: 45 DQPDPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYT 104
Query: 79 KIARAAIEPQKA 90
+ +AA+E Q A
Sbjct: 105 R--KAALEAQNA 114
>gi|155372145|ref|NP_001094682.1| CUGBP Elav-like family member 1 [Bos taurus]
gi|154425935|gb|AAI51434.1| CUGBP1 protein [Bos taurus]
gi|296479665|tpg|DAA21780.1| TPA: CUG triplet repeat, RNA-binding protein 1 [Bos taurus]
Length = 486
Score = 74.7 bits (182), Expect = 6e-12, Method: Composition-based stats.
Identities = 38/77 (49%), Positives = 51/77 (66%), Gaps = 4/77 (5%)
Query: 16 SMSLPEQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTG--QSKGKIF 73
++ P+QPD D IKMFVGQ+PR+ E DL ++F +YG VY INVLRD+ QSKG F
Sbjct: 4 TLDHPDQPDLDAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCF 63
Query: 74 EAAFLKIARAAIEPQKA 90
+ + +AA+E Q A
Sbjct: 64 VTFYTR--KAALEAQNA 78
>gi|402879613|ref|XP_003903426.1| PREDICTED: CUGBP Elav-like family member 2 isoform 2 [Papio
anubis]
gi|426363973|ref|XP_004049101.1| PREDICTED: CUGBP Elav-like family member 2 isoform 1 [Gorilla
gorilla gorilla]
gi|14701777|gb|AAK72223.1| neuroplastoma apoptosis-related RNA-binding protein 3 [Homo
sapiens]
gi|194390100|dbj|BAG61812.1| unnamed protein product [Homo sapiens]
Length = 484
Score = 74.7 bits (182), Expect = 6e-12, Method: Composition-based stats.
Identities = 39/72 (54%), Positives = 48/72 (66%), Gaps = 4/72 (5%)
Query: 21 EQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTG--QSKGKIFEAAFL 78
+QPDPD IKMFVGQIPRS E +L ++F YG VY INVLRD+ QSKG F +
Sbjct: 9 DQPDPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYT 68
Query: 79 KIARAAIEPQKA 90
+ +AA+E Q A
Sbjct: 69 R--KAALEAQNA 78
>gi|159032039|ref|NP_001103702.1| CUGBP Elav-like family member 2 isoform 5 [Mus musculus]
gi|4249672|gb|AAD13763.1| apoptosis-related RNA binding protein [Mus musculus]
gi|120538103|gb|AAI29097.1| Cugbp2 protein [Rattus norvegicus]
Length = 484
Score = 74.7 bits (182), Expect = 6e-12, Method: Composition-based stats.
Identities = 39/72 (54%), Positives = 48/72 (66%), Gaps = 4/72 (5%)
Query: 21 EQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTG--QSKGKIFEAAFL 78
+QPDPD IKMFVGQIPRS E +L ++F YG VY INVLRD+ QSKG F +
Sbjct: 9 DQPDPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYT 68
Query: 79 KIARAAIEPQKA 90
+ +AA+E Q A
Sbjct: 69 R--KAALEAQNA 78
>gi|410225364|gb|JAA09901.1| CUGBP, Elav-like family member 2 [Pan troglodytes]
gi|410263770|gb|JAA19851.1| CUGBP, Elav-like family member 2 [Pan troglodytes]
gi|410263772|gb|JAA19852.1| CUGBP, Elav-like family member 2 [Pan troglodytes]
gi|410305936|gb|JAA31568.1| CUGBP, Elav-like family member 2 [Pan troglodytes]
gi|410349365|gb|JAA41286.1| CUGBP, Elav-like family member 2 [Pan troglodytes]
Length = 519
Score = 74.7 bits (182), Expect = 6e-12, Method: Composition-based stats.
Identities = 39/72 (54%), Positives = 48/72 (66%), Gaps = 4/72 (5%)
Query: 21 EQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTG--QSKGKIFEAAFL 78
+QPDPD IKMFVGQIPRS E +L ++F YG VY INVLRD+ QSKG F +
Sbjct: 40 DQPDPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYT 99
Query: 79 KIARAAIEPQKA 90
+ +AA+E Q A
Sbjct: 100 R--KAALEAQNA 109
>gi|387015318|gb|AFJ49778.1| CUGBP Elav-like family member 1-like [Crotalus adamanteus]
Length = 511
Score = 74.7 bits (182), Expect = 6e-12, Method: Composition-based stats.
Identities = 39/77 (50%), Positives = 50/77 (64%), Gaps = 4/77 (5%)
Query: 16 SMSLPEQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTG--QSKGKIF 73
++ P+QPD D IKMFVGQ+PRS E DL +F +YG VY INVLRD+ QSKG F
Sbjct: 31 TLDHPDQPDLDAIKMFVGQVPRSWSEKDLRDLFEQYGAVYEINVLRDRSQNPPQSKGCCF 90
Query: 74 EAAFLKIARAAIEPQKA 90
+ + +AA+E Q A
Sbjct: 91 VTFYTR--KAALEAQNA 105
>gi|395827351|ref|XP_003786868.1| PREDICTED: CUGBP Elav-like family member 2 isoform 3 [Otolemur
garnettii]
Length = 514
Score = 74.7 bits (182), Expect = 6e-12, Method: Composition-based stats.
Identities = 39/72 (54%), Positives = 48/72 (66%), Gaps = 4/72 (5%)
Query: 21 EQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTG--QSKGKIFEAAFL 78
+QPDPD IKMFVGQIPRS E +L ++F YG VY INVLRD+ QSKG F +
Sbjct: 33 DQPDPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYT 92
Query: 79 KIARAAIEPQKA 90
+ +AA+E Q A
Sbjct: 93 R--KAALEAQNA 102
>gi|68533093|dbj|BAE06101.1| CUGBP1 variant protein [Homo sapiens]
Length = 544
Score = 74.7 bits (182), Expect = 6e-12, Method: Composition-based stats.
Identities = 38/77 (49%), Positives = 51/77 (66%), Gaps = 4/77 (5%)
Query: 16 SMSLPEQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTG--QSKGKIF 73
++ P+QPD D IKMFVGQ+PR+ E DL ++F +YG VY INVLRD+ QSKG F
Sbjct: 63 TLDHPDQPDLDAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCF 122
Query: 74 EAAFLKIARAAIEPQKA 90
+ + +AA+E Q A
Sbjct: 123 VTFYTR--KAALEAQNA 137
>gi|351708216|gb|EHB11135.1| CUG-BP- and ETR-3-like factor 1 [Heterocephalus glaber]
Length = 513
Score = 74.7 bits (182), Expect = 6e-12, Method: Composition-based stats.
Identities = 38/77 (49%), Positives = 51/77 (66%), Gaps = 4/77 (5%)
Query: 16 SMSLPEQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTG--QSKGKIF 73
++ P+QPD D IKMFVGQ+PR+ E DL ++F +YG VY INVLRD+ QSKG F
Sbjct: 31 TLDHPDQPDLDAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCF 90
Query: 74 EAAFLKIARAAIEPQKA 90
+ + +AA+E Q A
Sbjct: 91 VTFYTR--KAALEAQNA 105
>gi|281340493|gb|EFB16077.1| hypothetical protein PANDA_010600 [Ailuropoda melanoleuca]
Length = 486
Score = 74.7 bits (182), Expect = 6e-12, Method: Composition-based stats.
Identities = 38/77 (49%), Positives = 51/77 (66%), Gaps = 4/77 (5%)
Query: 16 SMSLPEQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTG--QSKGKIF 73
++ P+QPD D IKMFVGQ+PR+ E DL ++F +YG VY INVLRD+ QSKG F
Sbjct: 4 TLDHPDQPDLDAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCF 63
Query: 74 EAAFLKIARAAIEPQKA 90
+ + +AA+E Q A
Sbjct: 64 VTFYTR--KAALEAQNA 78
>gi|149632715|ref|XP_001509363.1| PREDICTED: CUGBP Elav-like family member 1 [Ornithorhynchus
anatinus]
Length = 513
Score = 74.7 bits (182), Expect = 6e-12, Method: Composition-based stats.
Identities = 39/77 (50%), Positives = 51/77 (66%), Gaps = 4/77 (5%)
Query: 16 SMSLPEQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTG--QSKGKIF 73
++ P+QPD D IKMFVGQ+PRS E DL ++F +YG VY INVLRD+ QSKG F
Sbjct: 31 TLDHPDQPDLDAIKMFVGQVPRSWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCF 90
Query: 74 EAAFLKIARAAIEPQKA 90
+ + +AA+E Q A
Sbjct: 91 VTFYTR--KAALEAQNA 105
>gi|73949074|ref|XP_849139.1| PREDICTED: CUGBP, Elav-like family member 2 isoform 2 [Canis
lupus familiaris]
gi|338721615|ref|XP_003364409.1| PREDICTED: CUGBP, Elav-like family member 2 isoform 3 [Equus
caballus]
Length = 484
Score = 74.7 bits (182), Expect = 6e-12, Method: Composition-based stats.
Identities = 39/72 (54%), Positives = 48/72 (66%), Gaps = 4/72 (5%)
Query: 21 EQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTG--QSKGKIFEAAFL 78
+QPDPD IKMFVGQIPRS E +L ++F YG VY INVLRD+ QSKG F +
Sbjct: 9 DQPDPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYT 68
Query: 79 KIARAAIEPQKA 90
+ +AA+E Q A
Sbjct: 69 R--KAALEAQNA 78
>gi|281345849|gb|EFB21433.1| hypothetical protein PANDA_019092 [Ailuropoda melanoleuca]
Length = 512
Score = 74.7 bits (182), Expect = 6e-12, Method: Composition-based stats.
Identities = 39/72 (54%), Positives = 48/72 (66%), Gaps = 4/72 (5%)
Query: 21 EQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTG--QSKGKIFEAAFL 78
+QPDPD IKMFVGQIPRS E +L ++F YG VY INVLRD+ QSKG F +
Sbjct: 15 DQPDPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYT 74
Query: 79 KIARAAIEPQKA 90
+ +AA+E Q A
Sbjct: 75 R--KAALEAQNA 84
>gi|14701786|gb|AAK72224.1| neuroplastoma apoptosis-related RNA-binding protein 2 [Homo
sapiens]
Length = 509
Score = 74.7 bits (182), Expect = 6e-12, Method: Composition-based stats.
Identities = 39/72 (54%), Positives = 48/72 (66%), Gaps = 4/72 (5%)
Query: 21 EQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTG--QSKGKIFEAAFL 78
+QPDPD IKMFVGQIPRS E +L ++F YG VY INVLRD+ QSKG F +
Sbjct: 28 DQPDPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYT 87
Query: 79 KIARAAIEPQKA 90
+ +AA+E Q A
Sbjct: 88 R--KAALEAQNA 97
>gi|410963195|ref|XP_003988151.1| PREDICTED: CUGBP Elav-like family member 2 isoform 3 [Felis
catus]
Length = 484
Score = 74.7 bits (182), Expect = 6e-12, Method: Composition-based stats.
Identities = 39/72 (54%), Positives = 48/72 (66%), Gaps = 4/72 (5%)
Query: 21 EQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTG--QSKGKIFEAAFL 78
+QPDPD IKMFVGQIPRS E +L ++F YG VY INVLRD+ QSKG F +
Sbjct: 9 DQPDPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYT 68
Query: 79 KIARAAIEPQKA 90
+ +AA+E Q A
Sbjct: 69 R--KAALEAQNA 78
>gi|395539013|ref|XP_003771468.1| PREDICTED: CUGBP Elav-like family member 2 isoform 4 [Sarcophilus
harrisii]
Length = 540
Score = 74.7 bits (182), Expect = 6e-12, Method: Composition-based stats.
Identities = 39/72 (54%), Positives = 48/72 (66%), Gaps = 4/72 (5%)
Query: 21 EQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTG--QSKGKIFEAAFL 78
+QPDPD IKMFVGQIPRS E +L ++F YG VY INVLRD+ QSKG F +
Sbjct: 51 DQPDPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYT 110
Query: 79 KIARAAIEPQKA 90
+ +AA+E Q A
Sbjct: 111 R--KAALEAQNA 120
>gi|332833593|ref|XP_003312501.1| PREDICTED: CUGBP, Elav-like family member 2 isoform 1 [Pan
troglodytes]
gi|397515222|ref|XP_003827855.1| PREDICTED: CUGBP Elav-like family member 2 isoform 1 [Pan paniscus]
gi|403278083|ref|XP_003930658.1| PREDICTED: CUGBP Elav-like family member 2 isoform 1 [Saimiri
boliviensis boliviensis]
gi|380808894|gb|AFE76322.1| CUGBP Elav-like family member 2 isoform 3 [Macaca mulatta]
Length = 514
Score = 74.7 bits (182), Expect = 6e-12, Method: Composition-based stats.
Identities = 39/72 (54%), Positives = 48/72 (66%), Gaps = 4/72 (5%)
Query: 21 EQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTG--QSKGKIFEAAFL 78
+QPDPD IKMFVGQIPRS E +L ++F YG VY INVLRD+ QSKG F +
Sbjct: 33 DQPDPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYT 92
Query: 79 KIARAAIEPQKA 90
+ +AA+E Q A
Sbjct: 93 R--KAALEAQNA 102
>gi|189054263|dbj|BAG36783.1| unnamed protein product [Homo sapiens]
Length = 509
Score = 74.7 bits (182), Expect = 6e-12, Method: Composition-based stats.
Identities = 39/72 (54%), Positives = 48/72 (66%), Gaps = 4/72 (5%)
Query: 21 EQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTG--QSKGKIFEAAFL 78
+QPDPD IKMFVGQIPRS E +L ++F YG VY INVLRD+ QSKG F +
Sbjct: 28 DQPDPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYT 87
Query: 79 KIARAAIEPQKA 90
+ +AA+E Q A
Sbjct: 88 R--KAALEAQNA 97
>gi|119606755|gb|EAW86349.1| CUG triplet repeat, RNA binding protein 2, isoform CRA_d [Homo
sapiens]
Length = 509
Score = 74.7 bits (182), Expect = 6e-12, Method: Composition-based stats.
Identities = 39/72 (54%), Positives = 48/72 (66%), Gaps = 4/72 (5%)
Query: 21 EQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTG--QSKGKIFEAAFL 78
+QPDPD IKMFVGQIPRS E +L ++F YG VY INVLRD+ QSKG F +
Sbjct: 28 DQPDPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYT 87
Query: 79 KIARAAIEPQKA 90
+ +AA+E Q A
Sbjct: 88 R--KAALEAQNA 97
>gi|3927998|emb|CAA77110.1| elav-type RNA-binding protein [Mus musculus]
Length = 484
Score = 74.7 bits (182), Expect = 6e-12, Method: Composition-based stats.
Identities = 39/72 (54%), Positives = 48/72 (66%), Gaps = 4/72 (5%)
Query: 21 EQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTG--QSKGKIFEAAFL 78
+QPDPD IKMFVGQIPRS E +L ++F YG VY INVLRD+ QSKG F +
Sbjct: 9 DQPDPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYT 68
Query: 79 KIARAAIEPQKA 90
+ +AA+E Q A
Sbjct: 69 R--KAALEAQNA 78
>gi|426245410|ref|XP_004016504.1| PREDICTED: CUGBP Elav-like family member 1 [Ovis aries]
Length = 486
Score = 74.7 bits (182), Expect = 7e-12, Method: Composition-based stats.
Identities = 38/77 (49%), Positives = 51/77 (66%), Gaps = 4/77 (5%)
Query: 16 SMSLPEQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTG--QSKGKIF 73
++ P+QPD D IKMFVGQ+PR+ E DL ++F +YG VY INVLRD+ QSKG F
Sbjct: 4 TLDHPDQPDLDAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCF 63
Query: 74 EAAFLKIARAAIEPQKA 90
+ + +AA+E Q A
Sbjct: 64 VTFYTR--KAALEAQNA 78
>gi|383415257|gb|AFH30842.1| CUGBP Elav-like family member 1 isoform 4 [Macaca mulatta]
gi|384939406|gb|AFI33308.1| CUGBP Elav-like family member 1 isoform 4 [Macaca mulatta]
gi|384944856|gb|AFI36033.1| CUGBP Elav-like family member 1 isoform 4 [Macaca mulatta]
gi|410222888|gb|JAA08663.1| CUGBP, Elav-like family member 1 [Pan troglodytes]
gi|410259328|gb|JAA17630.1| CUGBP, Elav-like family member 1 [Pan troglodytes]
gi|410259330|gb|JAA17631.1| CUGBP, Elav-like family member 1 [Pan troglodytes]
gi|410298512|gb|JAA27856.1| CUGBP, Elav-like family member 1 [Pan troglodytes]
gi|410298514|gb|JAA27857.1| CUGBP, Elav-like family member 1 [Pan troglodytes]
gi|410357300|gb|JAA44561.1| CUGBP, Elav-like family member 1 [Pan troglodytes]
gi|410357302|gb|JAA44562.1| CUGBP, Elav-like family member 1 [Pan troglodytes]
gi|410357304|gb|JAA44563.1| CUGBP, Elav-like family member 1 [Pan troglodytes]
Length = 513
Score = 74.7 bits (182), Expect = 7e-12, Method: Composition-based stats.
Identities = 38/77 (49%), Positives = 51/77 (66%), Gaps = 4/77 (5%)
Query: 16 SMSLPEQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTG--QSKGKIF 73
++ P+QPD D IKMFVGQ+PR+ E DL ++F +YG VY INVLRD+ QSKG F
Sbjct: 31 TLDHPDQPDLDAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCF 90
Query: 74 EAAFLKIARAAIEPQKA 90
+ + +AA+E Q A
Sbjct: 91 VTFYTR--KAALEAQNA 105
>gi|441646598|ref|XP_004090758.1| PREDICTED: CUGBP Elav-like family member 1 [Nomascus leucogenys]
gi|383415255|gb|AFH30841.1| CUGBP Elav-like family member 1 isoform 4 [Macaca mulatta]
gi|384939404|gb|AFI33307.1| CUGBP Elav-like family member 1 isoform 4 [Macaca mulatta]
gi|387540328|gb|AFJ70791.1| CUGBP Elav-like family member 1 isoform 4 [Macaca mulatta]
gi|410259332|gb|JAA17632.1| CUGBP, Elav-like family member 1 [Pan troglodytes]
gi|410298516|gb|JAA27858.1| CUGBP, Elav-like family member 1 [Pan troglodytes]
gi|410357404|gb|JAA44564.1| CUGBP, Elav-like family member 1 [Pan troglodytes]
Length = 509
Score = 74.7 bits (182), Expect = 7e-12, Method: Composition-based stats.
Identities = 38/77 (49%), Positives = 51/77 (66%), Gaps = 4/77 (5%)
Query: 16 SMSLPEQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTG--QSKGKIF 73
++ P+QPD D IKMFVGQ+PR+ E DL ++F +YG VY INVLRD+ QSKG F
Sbjct: 31 TLDHPDQPDLDAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCF 90
Query: 74 EAAFLKIARAAIEPQKA 90
+ + +AA+E Q A
Sbjct: 91 VTFYTR--KAALEAQNA 105
>gi|289547566|ref|NP_001166110.1| CUGBP Elav-like family member 1 isoform 4 [Homo sapiens]
gi|109106411|ref|XP_001106041.1| PREDICTED: CUGBP, Elav-like family member 1 isoform 4 [Macaca
mulatta]
gi|296218064|ref|XP_002755281.1| PREDICTED: CUGBP Elav-like family member 1 [Callithrix jacchus]
gi|332259914|ref|XP_003279029.1| PREDICTED: CUGBP Elav-like family member 1 [Nomascus leucogenys]
gi|397488336|ref|XP_003815223.1| PREDICTED: CUGBP Elav-like family member 1 [Pan paniscus]
gi|402893566|ref|XP_003909963.1| PREDICTED: CUGBP Elav-like family member 1 isoform 1 [Papio anubis]
gi|168275618|dbj|BAG10529.1| CUG triplet repeat RNA-binding protein 1 [synthetic construct]
Length = 512
Score = 74.7 bits (182), Expect = 7e-12, Method: Composition-based stats.
Identities = 38/77 (49%), Positives = 51/77 (66%), Gaps = 4/77 (5%)
Query: 16 SMSLPEQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTG--QSKGKIF 73
++ P+QPD D IKMFVGQ+PR+ E DL ++F +YG VY INVLRD+ QSKG F
Sbjct: 31 TLDHPDQPDLDAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCF 90
Query: 74 EAAFLKIARAAIEPQKA 90
+ + +AA+E Q A
Sbjct: 91 VTFYTR--KAALEAQNA 105
>gi|119588314|gb|EAW67908.1| CUG triplet repeat, RNA binding protein 1, isoform CRA_c [Homo
sapiens]
gi|355566554|gb|EHH22933.1| hypothetical protein EGK_06290 [Macaca mulatta]
gi|355752163|gb|EHH56283.1| hypothetical protein EGM_05659 [Macaca fascicularis]
Length = 514
Score = 74.7 bits (182), Expect = 7e-12, Method: Composition-based stats.
Identities = 38/77 (49%), Positives = 51/77 (66%), Gaps = 4/77 (5%)
Query: 16 SMSLPEQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTG--QSKGKIF 73
++ P+QPD D IKMFVGQ+PR+ E DL ++F +YG VY INVLRD+ QSKG F
Sbjct: 31 TLDHPDQPDLDAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCF 90
Query: 74 EAAFLKIARAAIEPQKA 90
+ + +AA+E Q A
Sbjct: 91 VTFYTR--KAALEAQNA 105
>gi|68303647|ref|NP_001020248.1| CUGBP Elav-like family member 2 isoform 3 [Homo sapiens]
gi|402879611|ref|XP_003903425.1| PREDICTED: CUGBP Elav-like family member 2 isoform 1 [Papio anubis]
gi|426363975|ref|XP_004049102.1| PREDICTED: CUGBP Elav-like family member 2 isoform 2 [Gorilla
gorilla gorilla]
gi|74754421|sp|O95319.1|CELF2_HUMAN RecName: Full=CUGBP Elav-like family member 2; Short=CELF-2;
AltName: Full=Bruno-like protein 3; AltName: Full=CUG
triplet repeat RNA-binding protein 2; Short=CUG-BP2;
AltName: Full=CUG-BP- and ETR-3-like factor 2; AltName:
Full=ELAV-type RNA-binding protein 3; Short=ETR-3;
AltName: Full=Neuroblastoma apoptosis-related
RNA-binding protein; Short=hNAPOR; AltName:
Full=RNA-binding protein BRUNOL-3
gi|152013391|sp|Q5R8Y8.2|CELF2_PONAB RecName: Full=CUGBP Elav-like family member 2; Short=CELF-2;
AltName: Full=Bruno-like protein 3; AltName: Full=CUG
triplet repeat RNA-binding protein 2; Short=CUG-BP2;
AltName: Full=CUG-BP- and ETR-3-like factor 2; AltName:
Full=RNA-binding protein BRUNOL-3
gi|4249666|gb|AAD13760.1| apoptosis-related RNA binding protein [Homo sapiens]
gi|119606756|gb|EAW86350.1| CUG triplet repeat, RNA binding protein 2, isoform CRA_e [Homo
sapiens]
gi|380808896|gb|AFE76323.1| CUGBP Elav-like family member 2 isoform 3 [Macaca mulatta]
gi|380808898|gb|AFE76324.1| CUGBP Elav-like family member 2 isoform 3 [Macaca mulatta]
gi|410349367|gb|JAA41287.1| CUGBP, Elav-like family member 2 [Pan troglodytes]
Length = 508
Score = 74.7 bits (182), Expect = 7e-12, Method: Composition-based stats.
Identities = 39/72 (54%), Positives = 48/72 (66%), Gaps = 4/72 (5%)
Query: 21 EQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTG--QSKGKIFEAAFL 78
+QPDPD IKMFVGQIPRS E +L ++F YG VY INVLRD+ QSKG F +
Sbjct: 33 DQPDPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYT 92
Query: 79 KIARAAIEPQKA 90
+ +AA+E Q A
Sbjct: 93 R--KAALEAQNA 102
>gi|395827347|ref|XP_003786866.1| PREDICTED: CUGBP Elav-like family member 2 isoform 1 [Otolemur
garnettii]
Length = 521
Score = 74.7 bits (182), Expect = 7e-12, Method: Composition-based stats.
Identities = 39/72 (54%), Positives = 48/72 (66%), Gaps = 4/72 (5%)
Query: 21 EQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTG--QSKGKIFEAAFL 78
+QPDPD IKMFVGQIPRS E +L ++F YG VY INVLRD+ QSKG F +
Sbjct: 40 DQPDPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYT 99
Query: 79 KIARAAIEPQKA 90
+ +AA+E Q A
Sbjct: 100 R--KAALEAQNA 109
>gi|194388952|dbj|BAG61493.1| unnamed protein product [Homo sapiens]
Length = 514
Score = 74.7 bits (182), Expect = 7e-12, Method: Composition-based stats.
Identities = 39/72 (54%), Positives = 48/72 (66%), Gaps = 4/72 (5%)
Query: 21 EQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTG--QSKGKIFEAAFL 78
+QPDPD IKMFVGQIPRS E +L ++F YG VY INVLRD+ QSKG F +
Sbjct: 33 DQPDPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYT 92
Query: 79 KIARAAIEPQKA 90
+ +AA+E Q A
Sbjct: 93 R--KAALEAQNA 102
>gi|395815677|ref|XP_003781351.1| PREDICTED: CUGBP Elav-like family member 1 [Otolemur garnettii]
Length = 510
Score = 74.7 bits (182), Expect = 7e-12, Method: Composition-based stats.
Identities = 38/77 (49%), Positives = 51/77 (66%), Gaps = 4/77 (5%)
Query: 16 SMSLPEQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTG--QSKGKIF 73
++ P+QPD D IKMFVGQ+PR+ E DL ++F +YG VY INVLRD+ QSKG F
Sbjct: 31 TLDHPDQPDLDAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCF 90
Query: 74 EAAFLKIARAAIEPQKA 90
+ + +AA+E Q A
Sbjct: 91 VTFYTR--KAALEAQNA 105
>gi|146386739|pdb|2DHS|A Chain A, Solution Structure Of Nucleic Acid Binding Protein
Cugbp1ab And Its Binding Study With Dna And Rna
Length = 187
Score = 74.7 bits (182), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 38/77 (49%), Positives = 51/77 (66%), Gaps = 4/77 (5%)
Query: 16 SMSLPEQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTG--QSKGKIF 73
++ P+QPD D IKMFVGQ+PR+ E DL ++F +YG VY INVLRD+ QSKG F
Sbjct: 4 TLDHPDQPDLDAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCF 63
Query: 74 EAAFLKIARAAIEPQKA 90
+ + +AA+E Q A
Sbjct: 64 VTFYTR--KAALEAQNA 78
>gi|81911882|sp|Q792H5.1|CELF2_RAT RecName: Full=CUGBP Elav-like family member 2; Short=CELF-2;
AltName: Full=Bruno-like protein 3; AltName: Full=CUG
triplet repeat RNA-binding protein 2; Short=CUG-BP2;
AltName: Full=CUG-BP- and ETR-3-like factor 2; AltName:
Full=ELAV-type RNA-binding protein 3; Short=ETR-3;
Short=Protein ETR-R3; AltName: Full=Neuroblastoma
apoptosis-related RNA-binding protein; Short=rNapor;
AltName: Full=RNA-binding protein BRUNOL-3
gi|81917931|sp|Q9Z0H4.1|CELF2_MOUSE RecName: Full=CUGBP Elav-like family member 2; Short=CELF-2;
AltName: Full=Bruno-like protein 3; AltName: Full=CUG
triplet repeat RNA-binding protein 2; Short=CUG-BP2;
AltName: Full=CUG-BP- and ETR-3-like factor 2; AltName:
Full=ELAV-type RNA-binding protein 3; Short=ETR-3;
Short=mETR-3; AltName: Full=Neuroblastoma
apoptosis-related RNA-binding protein; Short=mNapor;
AltName: Full=RNA-binding protein BRUNOL-3
gi|4249670|gb|AAD13762.1| apoptosis-related RNA binding protein [Rattus norvegicus]
gi|4249674|gb|AAD13764.1| apoptosis-related RNA binding protein [Mus musculus]
gi|20073073|gb|AAH26856.1| Cugbp2 protein [Mus musculus]
Length = 508
Score = 74.7 bits (182), Expect = 7e-12, Method: Composition-based stats.
Identities = 39/72 (54%), Positives = 48/72 (66%), Gaps = 4/72 (5%)
Query: 21 EQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTG--QSKGKIFEAAFL 78
+QPDPD IKMFVGQIPRS E +L ++F YG VY INVLRD+ QSKG F +
Sbjct: 33 DQPDPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYT 92
Query: 79 KIARAAIEPQKA 90
+ +AA+E Q A
Sbjct: 93 R--KAALEAQNA 102
>gi|332833599|ref|XP_507653.3| PREDICTED: CUGBP, Elav-like family member 2 isoform 4 [Pan
troglodytes]
gi|410349369|gb|JAA41288.1| CUGBP, Elav-like family member 2 [Pan troglodytes]
Length = 521
Score = 74.7 bits (182), Expect = 7e-12, Method: Composition-based stats.
Identities = 39/72 (54%), Positives = 48/72 (66%), Gaps = 4/72 (5%)
Query: 21 EQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTG--QSKGKIFEAAFL 78
+QPDPD IKMFVGQIPRS E +L ++F YG VY INVLRD+ QSKG F +
Sbjct: 40 DQPDPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYT 99
Query: 79 KIARAAIEPQKA 90
+ +AA+E Q A
Sbjct: 100 R--KAALEAQNA 109
>gi|431915767|gb|ELK16100.1| CUG-BP- and ETR-3-like factor 1 [Pteropus alecto]
Length = 513
Score = 74.7 bits (182), Expect = 7e-12, Method: Composition-based stats.
Identities = 38/77 (49%), Positives = 51/77 (66%), Gaps = 4/77 (5%)
Query: 16 SMSLPEQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTG--QSKGKIF 73
++ P+QPD D IKMFVGQ+PR+ E DL ++F +YG VY INVLRD+ QSKG F
Sbjct: 31 TLDHPDQPDLDAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCF 90
Query: 74 EAAFLKIARAAIEPQKA 90
+ + +AA+E Q A
Sbjct: 91 VTFYTR--KAALEAQNA 105
>gi|338712047|ref|XP_003362650.1| PREDICTED: CUGBP, Elav-like family member 1 isoform 2 [Equus
caballus]
gi|345783916|ref|XP_003432496.1| PREDICTED: CUGBP, Elav-like family member 1 [Canis lupus
familiaris]
gi|410973717|ref|XP_003993294.1| PREDICTED: CUGBP Elav-like family member 1 isoform 1 [Felis catus]
Length = 512
Score = 74.7 bits (182), Expect = 7e-12, Method: Composition-based stats.
Identities = 38/77 (49%), Positives = 51/77 (66%), Gaps = 4/77 (5%)
Query: 16 SMSLPEQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTG--QSKGKIF 73
++ P+QPD D IKMFVGQ+PR+ E DL ++F +YG VY INVLRD+ QSKG F
Sbjct: 31 TLDHPDQPDLDAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCF 90
Query: 74 EAAFLKIARAAIEPQKA 90
+ + +AA+E Q A
Sbjct: 91 VTFYTR--KAALEAQNA 105
>gi|410225362|gb|JAA09900.1| CUGBP, Elav-like family member 2 [Pan troglodytes]
gi|410263776|gb|JAA19854.1| CUGBP, Elav-like family member 2 [Pan troglodytes]
gi|410305934|gb|JAA31567.1| CUGBP, Elav-like family member 2 [Pan troglodytes]
gi|410305938|gb|JAA31569.1| CUGBP, Elav-like family member 2 [Pan troglodytes]
gi|410349361|gb|JAA41284.1| CUGBP, Elav-like family member 2 [Pan troglodytes]
gi|410349363|gb|JAA41285.1| CUGBP, Elav-like family member 2 [Pan troglodytes]
Length = 515
Score = 74.7 bits (182), Expect = 7e-12, Method: Composition-based stats.
Identities = 39/72 (54%), Positives = 48/72 (66%), Gaps = 4/72 (5%)
Query: 21 EQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTG--QSKGKIFEAAFL 78
+QPDPD IKMFVGQIPRS E +L ++F YG VY INVLRD+ QSKG F +
Sbjct: 40 DQPDPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYT 99
Query: 79 KIARAAIEPQKA 90
+ +AA+E Q A
Sbjct: 100 R--KAALEAQNA 109
>gi|338721613|ref|XP_003364408.1| PREDICTED: CUGBP, Elav-like family member 2 isoform 2 [Equus
caballus]
gi|345793484|ref|XP_857942.2| PREDICTED: CUGBP, Elav-like family member 2 isoform 3 [Canis lupus
familiaris]
Length = 514
Score = 74.7 bits (182), Expect = 7e-12, Method: Composition-based stats.
Identities = 39/72 (54%), Positives = 48/72 (66%), Gaps = 4/72 (5%)
Query: 21 EQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTG--QSKGKIFEAAFL 78
+QPDPD IKMFVGQIPRS E +L ++F YG VY INVLRD+ QSKG F +
Sbjct: 33 DQPDPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYT 92
Query: 79 KIARAAIEPQKA 90
+ +AA+E Q A
Sbjct: 93 R--KAALEAQNA 102
>gi|195388108|ref|XP_002052732.1| GJ17718 [Drosophila virilis]
gi|194149189|gb|EDW64887.1| GJ17718 [Drosophila virilis]
Length = 738
Score = 74.7 bits (182), Expect = 7e-12, Method: Composition-based stats.
Identities = 36/73 (49%), Positives = 50/73 (68%), Gaps = 2/73 (2%)
Query: 18 SLPEQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAAF 77
S +QPD D IKMFVGQIP++ DE L ++F ++GRV+ +NVLRDKVT S+G F +
Sbjct: 267 SAKDQPDADNIKMFVGQIPKTWDELKLRRLFEQFGRVHTLNVLRDKVTSISRGCCFVTYY 326
Query: 78 LKIARAAIEPQKA 90
+ +AA+ Q A
Sbjct: 327 TR--KAALRAQDA 337
Score = 41.2 bits (95), Expect = 0.070, Method: Composition-based stats.
Identities = 20/45 (44%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Query: 29 KMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
K+FVG + + EAD+ ++F+ +G + VLRD+V GQSKG F
Sbjct: 365 KLFVGMLNKKFTEADVRQLFTGHGTIEECTVLRDQV-GQSKGCAF 408
>gi|440903464|gb|ELR54119.1| CUGBP Elav-like family member 1 [Bos grunniens mutus]
Length = 512
Score = 74.7 bits (182), Expect = 7e-12, Method: Composition-based stats.
Identities = 38/77 (49%), Positives = 51/77 (66%), Gaps = 4/77 (5%)
Query: 16 SMSLPEQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTG--QSKGKIF 73
++ P+QPD D IKMFVGQ+PR+ E DL ++F +YG VY INVLRD+ QSKG F
Sbjct: 31 TLDHPDQPDLDAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCF 90
Query: 74 EAAFLKIARAAIEPQKA 90
+ + +AA+E Q A
Sbjct: 91 VTFYTR--KAALEAQNA 105
>gi|432090407|gb|ELK23833.1| CUGBP Elav-like family member 1 [Myotis davidii]
Length = 513
Score = 74.7 bits (182), Expect = 7e-12, Method: Composition-based stats.
Identities = 38/77 (49%), Positives = 51/77 (66%), Gaps = 4/77 (5%)
Query: 16 SMSLPEQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTG--QSKGKIF 73
++ P+QPD D IKMFVGQ+PR+ E DL ++F +YG VY INVLRD+ QSKG F
Sbjct: 31 TLDHPDQPDLDAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCF 90
Query: 74 EAAFLKIARAAIEPQKA 90
+ + +AA+E Q A
Sbjct: 91 VTFYTR--KAALEAQNA 105
>gi|410963191|ref|XP_003988149.1| PREDICTED: CUGBP Elav-like family member 2 isoform 1 [Felis catus]
Length = 514
Score = 74.7 bits (182), Expect = 7e-12, Method: Composition-based stats.
Identities = 39/72 (54%), Positives = 48/72 (66%), Gaps = 4/72 (5%)
Query: 21 EQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTG--QSKGKIFEAAFL 78
+QPDPD IKMFVGQIPRS E +L ++F YG VY INVLRD+ QSKG F +
Sbjct: 33 DQPDPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYT 92
Query: 79 KIARAAIEPQKA 90
+ +AA+E Q A
Sbjct: 93 R--KAALEAQNA 102
>gi|395539011|ref|XP_003771467.1| PREDICTED: CUGBP Elav-like family member 2 isoform 3 [Sarcophilus
harrisii]
Length = 536
Score = 74.7 bits (182), Expect = 7e-12, Method: Composition-based stats.
Identities = 39/72 (54%), Positives = 48/72 (66%), Gaps = 4/72 (5%)
Query: 21 EQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTG--QSKGKIFEAAFL 78
+QPDPD IKMFVGQIPRS E +L ++F YG VY INVLRD+ QSKG F +
Sbjct: 51 DQPDPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYT 110
Query: 79 KIARAAIEPQKA 90
+ +AA+E Q A
Sbjct: 111 R--KAALEAQNA 120
>gi|348558646|ref|XP_003465128.1| PREDICTED: CUGBP Elav-like family member 1-like [Cavia porcellus]
Length = 513
Score = 74.7 bits (182), Expect = 7e-12, Method: Composition-based stats.
Identities = 38/77 (49%), Positives = 51/77 (66%), Gaps = 4/77 (5%)
Query: 16 SMSLPEQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTG--QSKGKIF 73
++ P+QPD D IKMFVGQ+PR+ E DL ++F +YG VY INVLRD+ QSKG F
Sbjct: 31 TLDHPDQPDLDAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCF 90
Query: 74 EAAFLKIARAAIEPQKA 90
+ + +AA+E Q A
Sbjct: 91 VTFYTR--KAALEAQNA 105
>gi|326911121|ref|XP_003201910.1| PREDICTED: CUGBP Elav-like family member 2-like [Meleagris
gallopavo]
Length = 526
Score = 74.7 bits (182), Expect = 7e-12, Method: Composition-based stats.
Identities = 39/72 (54%), Positives = 48/72 (66%), Gaps = 4/72 (5%)
Query: 21 EQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTG--QSKGKIFEAAFL 78
+QPDPD IKMFVGQIPRS E +L ++F YG VY INVLRD+ QSKG F +
Sbjct: 51 DQPDPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYT 110
Query: 79 KIARAAIEPQKA 90
+ +AA+E Q A
Sbjct: 111 R--KAALEAQNA 120
>gi|301772548|ref|XP_002921692.1| PREDICTED: CUGBP Elav-like family member 1-like [Ailuropoda
melanoleuca]
Length = 512
Score = 74.7 bits (182), Expect = 7e-12, Method: Composition-based stats.
Identities = 38/77 (49%), Positives = 51/77 (66%), Gaps = 4/77 (5%)
Query: 16 SMSLPEQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTG--QSKGKIF 73
++ P+QPD D IKMFVGQ+PR+ E DL ++F +YG VY INVLRD+ QSKG F
Sbjct: 31 TLDHPDQPDLDAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCF 90
Query: 74 EAAFLKIARAAIEPQKA 90
+ + +AA+E Q A
Sbjct: 91 VTFYTR--KAALEAQNA 105
>gi|134152680|ref|NP_006552.3| CUGBP Elav-like family member 2 isoform 2 [Homo sapiens]
gi|348575363|ref|XP_003473459.1| PREDICTED: CUGBP Elav-like family member 2-like isoform 2 [Cavia
porcellus]
Length = 521
Score = 74.7 bits (182), Expect = 7e-12, Method: Composition-based stats.
Identities = 39/72 (54%), Positives = 48/72 (66%), Gaps = 4/72 (5%)
Query: 21 EQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTG--QSKGKIFEAAFL 78
+QPDPD IKMFVGQIPRS E +L ++F YG VY INVLRD+ QSKG F +
Sbjct: 40 DQPDPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYT 99
Query: 79 KIARAAIEPQKA 90
+ +AA+E Q A
Sbjct: 100 R--KAALEAQNA 109
>gi|55731735|emb|CAH92572.1| hypothetical protein [Pongo abelii]
Length = 490
Score = 74.7 bits (182), Expect = 7e-12, Method: Composition-based stats.
Identities = 39/72 (54%), Positives = 48/72 (66%), Gaps = 4/72 (5%)
Query: 21 EQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTG--QSKGKIFEAAFL 78
+QPDPD IKMFVGQIPRS E +L ++F YG VY INVLRD+ QSKG F +
Sbjct: 9 DQPDPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYT 68
Query: 79 KIARAAIEPQKA 90
+ +AA+E Q A
Sbjct: 69 R--KAALEAQNA 78
>gi|402879615|ref|XP_003903427.1| PREDICTED: CUGBP Elav-like family member 2 isoform 3 [Papio anubis]
Length = 521
Score = 74.3 bits (181), Expect = 7e-12, Method: Composition-based stats.
Identities = 39/72 (54%), Positives = 48/72 (66%), Gaps = 4/72 (5%)
Query: 21 EQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTG--QSKGKIFEAAFL 78
+QPDPD IKMFVGQIPRS E +L ++F YG VY INVLRD+ QSKG F +
Sbjct: 40 DQPDPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYT 99
Query: 79 KIARAAIEPQKA 90
+ +AA+E Q A
Sbjct: 100 R--KAALEAQNA 109
>gi|22137759|gb|AAH36391.1| CUGBP2 protein [Homo sapiens]
gi|119606753|gb|EAW86347.1| CUG triplet repeat, RNA binding protein 2, isoform CRA_b [Homo
sapiens]
Length = 521
Score = 74.3 bits (181), Expect = 7e-12, Method: Composition-based stats.
Identities = 39/72 (54%), Positives = 48/72 (66%), Gaps = 4/72 (5%)
Query: 21 EQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTG--QSKGKIFEAAFL 78
+QPDPD IKMFVGQIPRS E +L ++F YG VY INVLRD+ QSKG F +
Sbjct: 28 DQPDPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYT 87
Query: 79 KIARAAIEPQKA 90
+ +AA+E Q A
Sbjct: 88 R--KAALEAQNA 97
>gi|380808892|gb|AFE76321.1| CUGBP Elav-like family member 2 isoform 2 [Macaca mulatta]
Length = 515
Score = 74.3 bits (181), Expect = 8e-12, Method: Composition-based stats.
Identities = 39/72 (54%), Positives = 48/72 (66%), Gaps = 4/72 (5%)
Query: 21 EQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTG--QSKGKIFEAAFL 78
+QPDPD IKMFVGQIPRS E +L ++F YG VY INVLRD+ QSKG F +
Sbjct: 40 DQPDPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYT 99
Query: 79 KIARAAIEPQKA 90
+ +AA+E Q A
Sbjct: 100 R--KAALEAQNA 109
>gi|291401988|ref|XP_002717491.1| PREDICTED: CUG triplet repeat, RNA binding protein 2-like
[Oryctolagus cuniculus]
Length = 532
Score = 74.3 bits (181), Expect = 8e-12, Method: Composition-based stats.
Identities = 39/72 (54%), Positives = 48/72 (66%), Gaps = 4/72 (5%)
Query: 21 EQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTG--QSKGKIFEAAFL 78
+QPDPD IKMFVGQIPRS E +L ++F YG VY INVLRD+ QSKG F +
Sbjct: 51 DQPDPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYT 110
Query: 79 KIARAAIEPQKA 90
+ +AA+E Q A
Sbjct: 111 R--KAALEAQNA 120
>gi|426368243|ref|XP_004051120.1| PREDICTED: CUGBP Elav-like family member 1 [Gorilla gorilla
gorilla]
Length = 551
Score = 74.3 bits (181), Expect = 8e-12, Method: Composition-based stats.
Identities = 38/77 (49%), Positives = 51/77 (66%), Gaps = 4/77 (5%)
Query: 16 SMSLPEQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTG--QSKGKIF 73
++ P+QPD D IKMFVGQ+PR+ E DL ++F +YG VY INVLRD+ QSKG F
Sbjct: 114 TLDHPDQPDLDAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCF 173
Query: 74 EAAFLKIARAAIEPQKA 90
+ + +AA+E Q A
Sbjct: 174 VTFYTR--KAALEAQNA 188
>gi|348575367|ref|XP_003473461.1| PREDICTED: CUGBP Elav-like family member 2-like isoform 4 [Cavia
porcellus]
gi|354467974|ref|XP_003496442.1| PREDICTED: CUGBP Elav-like family member 2-like isoform 4
[Cricetulus griseus]
Length = 478
Score = 74.3 bits (181), Expect = 8e-12, Method: Composition-based stats.
Identities = 39/72 (54%), Positives = 48/72 (66%), Gaps = 4/72 (5%)
Query: 21 EQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTG--QSKGKIFEAAFL 78
+QPDPD IKMFVGQIPRS E +L ++F YG VY INVLRD+ QSKG F +
Sbjct: 51 DQPDPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYT 110
Query: 79 KIARAAIEPQKA 90
+ +AA+E Q A
Sbjct: 111 R--KAALEAQNA 120
>gi|348575365|ref|XP_003473460.1| PREDICTED: CUGBP Elav-like family member 2-like isoform 3 [Cavia
porcellus]
Length = 532
Score = 74.3 bits (181), Expect = 8e-12, Method: Composition-based stats.
Identities = 39/72 (54%), Positives = 48/72 (66%), Gaps = 4/72 (5%)
Query: 21 EQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTG--QSKGKIFEAAFL 78
+QPDPD IKMFVGQIPRS E +L ++F YG VY INVLRD+ QSKG F +
Sbjct: 51 DQPDPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYT 110
Query: 79 KIARAAIEPQKA 90
+ +AA+E Q A
Sbjct: 111 R--KAALEAQNA 120
>gi|156717754|ref|NP_001096417.1| CUGBP Elav-like family member 2 [Xenopus (Silurana) tropicalis]
gi|152013392|sp|A4IIM2.1|CELF2_XENTR RecName: Full=CUGBP Elav-like family member 2; Short=CELF-2;
AltName: Full=Bruno-like protein 3; AltName: Full=CUG
triplet repeat RNA-binding protein 2; Short=CUG-BP2;
AltName: Full=CUG-BP- and ETR-3-like factor 2; AltName:
Full=ELAV-type RNA-binding protein 3; Short=ETR-3;
AltName: Full=RNA-binding protein BRUNOL-3
gi|134024252|gb|AAI36077.1| LOC100125022 protein [Xenopus (Silurana) tropicalis]
Length = 513
Score = 74.3 bits (181), Expect = 8e-12, Method: Composition-based stats.
Identities = 39/72 (54%), Positives = 47/72 (65%), Gaps = 4/72 (5%)
Query: 21 EQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTG--QSKGKIFEAAFL 78
+QPDPD IKMFVGQIPRS E +L +F YG VY INVLRD+ QSKG F +
Sbjct: 28 DQPDPDAIKMFVGQIPRSWSEKELKDLFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYT 87
Query: 79 KIARAAIEPQKA 90
+ +AA+E Q A
Sbjct: 88 R--KAALEAQNA 97
>gi|395539009|ref|XP_003771466.1| PREDICTED: CUGBP Elav-like family member 2 isoform 2 [Sarcophilus
harrisii]
Length = 478
Score = 74.3 bits (181), Expect = 8e-12, Method: Composition-based stats.
Identities = 39/72 (54%), Positives = 48/72 (66%), Gaps = 4/72 (5%)
Query: 21 EQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTG--QSKGKIFEAAFL 78
+QPDPD IKMFVGQIPRS E +L ++F YG VY INVLRD+ QSKG F +
Sbjct: 51 DQPDPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYT 110
Query: 79 KIARAAIEPQKA 90
+ +AA+E Q A
Sbjct: 111 R--KAALEAQNA 120
>gi|348575361|ref|XP_003473458.1| PREDICTED: CUGBP Elav-like family member 2-like isoform 1 [Cavia
porcellus]
Length = 526
Score = 74.3 bits (181), Expect = 8e-12, Method: Composition-based stats.
Identities = 39/72 (54%), Positives = 48/72 (66%), Gaps = 4/72 (5%)
Query: 21 EQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTG--QSKGKIFEAAFL 78
+QPDPD IKMFVGQIPRS E +L ++F YG VY INVLRD+ QSKG F +
Sbjct: 51 DQPDPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYT 110
Query: 79 KIARAAIEPQKA 90
+ +AA+E Q A
Sbjct: 111 R--KAALEAQNA 120
>gi|124286791|ref|NP_034290.2| CUGBP Elav-like family member 2 isoform 6 [Mus musculus]
Length = 478
Score = 74.3 bits (181), Expect = 8e-12, Method: Composition-based stats.
Identities = 39/72 (54%), Positives = 48/72 (66%), Gaps = 4/72 (5%)
Query: 21 EQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTG--QSKGKIFEAAFL 78
+QPDPD IKMFVGQIPRS E +L ++F YG VY INVLRD+ QSKG F +
Sbjct: 51 DQPDPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYT 110
Query: 79 KIARAAIEPQKA 90
+ +AA+E Q A
Sbjct: 111 R--KAALEAQNA 120
>gi|134152696|ref|NP_058893.2| CUGBP Elav-like family member 2 isoform 1 [Rattus norvegicus]
gi|3451291|emb|CAA09103.1| ETR-R3b protein [Rattus norvegicus]
Length = 532
Score = 74.3 bits (181), Expect = 8e-12, Method: Composition-based stats.
Identities = 39/72 (54%), Positives = 48/72 (66%), Gaps = 4/72 (5%)
Query: 21 EQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTG--QSKGKIFEAAFL 78
+QPDPD IKMFVGQIPRS E +L ++F YG VY INVLRD+ QSKG F +
Sbjct: 51 DQPDPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYT 110
Query: 79 KIARAAIEPQKA 90
+ +AA+E Q A
Sbjct: 111 R--KAALEAQNA 120
>gi|70794748|ref|NP_001020592.1| CUGBP Elav-like family member 1 [Rattus norvegicus]
gi|81918148|sp|Q4QQT3.1|CELF1_RAT RecName: Full=CUGBP Elav-like family member 1; Short=CELF-1;
AltName: Full=Bruno-like protein 2; AltName: Full=CUG
triplet repeat RNA-binding protein 1; Short=CUG-BP1;
AltName: Full=CUG-BP- and ETR-3-like factor 1; AltName:
Full=RNA-binding protein BRUNOL-2
gi|67678292|gb|AAH98012.1| CUG triplet repeat, RNA binding protein 1 [Rattus norvegicus]
Length = 487
Score = 74.3 bits (181), Expect = 8e-12, Method: Composition-based stats.
Identities = 37/77 (48%), Positives = 51/77 (66%), Gaps = 4/77 (5%)
Query: 16 SMSLPEQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTG--QSKGKIF 73
++ P+QPD D IKMFVGQ+PR+ E DL ++F +YG VY IN+LRD+ QSKG F
Sbjct: 4 TLDHPDQPDLDAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINILRDRSQNPPQSKGCCF 63
Query: 74 EAAFLKIARAAIEPQKA 90
+ + +AA+E Q A
Sbjct: 64 VTFYTR--KAALEAQNA 78
>gi|149022603|gb|EDL79497.1| CUG triplet repeat, RNA binding protein 1, isoform CRA_b [Rattus
norvegicus]
Length = 486
Score = 74.3 bits (181), Expect = 8e-12, Method: Composition-based stats.
Identities = 37/77 (48%), Positives = 51/77 (66%), Gaps = 4/77 (5%)
Query: 16 SMSLPEQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTG--QSKGKIF 73
++ P+QPD D IKMFVGQ+PR+ E DL ++F +YG VY IN+LRD+ QSKG F
Sbjct: 4 TLDHPDQPDLDAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINILRDRSQNPPQSKGCCF 63
Query: 74 EAAFLKIARAAIEPQKA 90
+ + +AA+E Q A
Sbjct: 64 VTFYTR--KAALEAQNA 78
>gi|12852385|dbj|BAB29392.1| unnamed protein product [Mus musculus]
gi|148695566|gb|EDL27513.1| CUG triplet repeat, RNA binding protein 1, isoform CRA_b [Mus
musculus]
Length = 487
Score = 74.3 bits (181), Expect = 8e-12, Method: Composition-based stats.
Identities = 37/77 (48%), Positives = 51/77 (66%), Gaps = 4/77 (5%)
Query: 16 SMSLPEQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTG--QSKGKIF 73
++ P+QPD D IKMFVGQ+PR+ E DL ++F +YG VY IN+LRD+ QSKG F
Sbjct: 4 TLDHPDQPDLDAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINILRDRSQNPPQSKGCCF 63
Query: 74 EAAFLKIARAAIEPQKA 90
+ + +AA+E Q A
Sbjct: 64 VTFYTR--KAALEAQNA 78
>gi|38570084|ref|NP_941955.1| CUGBP Elav-like family member 1 isoform 2 [Mus musculus]
gi|349585220|ref|NP_001231820.1| CUGBP Elav-like family member 1 isoform 2 [Mus musculus]
gi|349732093|ref|NP_001231832.1| CUGBP Elav-like family member 1 isoform 2 [Mus musculus]
gi|19857900|sp|P28659.2|CELF1_MOUSE RecName: Full=CUGBP Elav-like family member 1; Short=CELF-1;
AltName: Full=50 kDa nuclear polyadenylated RNA-binding
protein; AltName: Full=Brain protein F41; AltName:
Full=Bruno-like protein 2; AltName: Full=CUG triplet
repeat RNA-binding protein 1; Short=CUG-BP1; AltName:
Full=CUG-BP- and ETR-3-like factor 1; AltName:
Full=Deadenylation factor CUG-BP; AltName:
Full=Deadenylation factor EDEN-BP; AltName: Full=Embryo
deadenylation element-binding protein homolog;
Short=EDEN-BP homolog; AltName: Full=RNA-binding
protein BRUNOL-2
gi|12054715|emb|CAC20707.1| deadenylation factor EDEN-BP [Mus musculus]
Length = 486
Score = 74.3 bits (181), Expect = 8e-12, Method: Composition-based stats.
Identities = 37/77 (48%), Positives = 51/77 (66%), Gaps = 4/77 (5%)
Query: 16 SMSLPEQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTG--QSKGKIF 73
++ P+QPD D IKMFVGQ+PR+ E DL ++F +YG VY IN+LRD+ QSKG F
Sbjct: 4 TLDHPDQPDLDAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINILRDRSQNPPQSKGCCF 63
Query: 74 EAAFLKIARAAIEPQKA 90
+ + +AA+E Q A
Sbjct: 64 VTFYTR--KAALEAQNA 78
>gi|395539007|ref|XP_003771465.1| PREDICTED: CUGBP Elav-like family member 2 isoform 1 [Sarcophilus
harrisii]
Length = 526
Score = 74.3 bits (181), Expect = 8e-12, Method: Composition-based stats.
Identities = 39/72 (54%), Positives = 48/72 (66%), Gaps = 4/72 (5%)
Query: 21 EQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTG--QSKGKIFEAAFL 78
+QPDPD IKMFVGQIPRS E +L ++F YG VY INVLRD+ QSKG F +
Sbjct: 51 DQPDPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYT 110
Query: 79 KIARAAIEPQKA 90
+ +AA+E Q A
Sbjct: 111 R--KAALEAQNA 120
>gi|159032031|ref|NP_001103698.1| CUGBP Elav-like family member 2 isoform 1 [Mus musculus]
gi|237757271|ref|NP_001153765.1| CUGBP Elav-like family member 2 isoform 1 [Mus musculus]
gi|285026421|ref|NP_001077055.2| CUGBP Elav-like family member 2 isoform 2 [Rattus norvegicus]
gi|148676041|gb|EDL07988.1| CUG triplet repeat, RNA binding protein 2 [Mus musculus]
gi|149021034|gb|EDL78641.1| CUG triplet repeat, RNA binding protein 2, isoform CRA_a [Rattus
norvegicus]
gi|149021035|gb|EDL78642.1| CUG triplet repeat, RNA binding protein 2, isoform CRA_a [Rattus
norvegicus]
Length = 526
Score = 74.3 bits (181), Expect = 8e-12, Method: Composition-based stats.
Identities = 39/72 (54%), Positives = 48/72 (66%), Gaps = 4/72 (5%)
Query: 21 EQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTG--QSKGKIFEAAFL 78
+QPDPD IKMFVGQIPRS E +L ++F YG VY INVLRD+ QSKG F +
Sbjct: 51 DQPDPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYT 110
Query: 79 KIARAAIEPQKA 90
+ +AA+E Q A
Sbjct: 111 R--KAALEAQNA 120
>gi|47224440|emb|CAG08690.1| unnamed protein product [Tetraodon nigroviridis]
Length = 515
Score = 74.3 bits (181), Expect = 8e-12, Method: Composition-based stats.
Identities = 38/77 (49%), Positives = 51/77 (66%), Gaps = 4/77 (5%)
Query: 16 SMSLPEQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTG--QSKGKIF 73
S+ +QPDPD IKMFVGQIPRS E +L ++F +G V+ IN+LRD+ T QSKG F
Sbjct: 6 SLEHLDQPDPDAIKMFVGQIPRSWSETELRELFEPFGAVHQINILRDRTTNPPQSKGCCF 65
Query: 74 EAAFLKIARAAIEPQKA 90
+ + +AA+E Q A
Sbjct: 66 VTFYTR--KAALEAQNA 80
Score = 34.7 bits (78), Expect = 8.3, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 5/57 (8%)
Query: 29 KMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAAFLKIARAAI 85
K+F+G + + E ++ MFS +G++ VLR GQS+G AF+ A A+
Sbjct: 111 KLFIGMVSKKYGENEIRMMFSSFGQIEECRVLRGP-DGQSRG----CAFVTFATRAM 162
>gi|354467972|ref|XP_003496441.1| PREDICTED: CUGBP Elav-like family member 2-like isoform 3
[Cricetulus griseus]
Length = 532
Score = 74.3 bits (181), Expect = 8e-12, Method: Composition-based stats.
Identities = 39/72 (54%), Positives = 48/72 (66%), Gaps = 4/72 (5%)
Query: 21 EQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTG--QSKGKIFEAAFL 78
+QPDPD IKMFVGQIPRS E +L ++F YG VY INVLRD+ QSKG F +
Sbjct: 51 DQPDPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYT 110
Query: 79 KIARAAIEPQKA 90
+ +AA+E Q A
Sbjct: 111 R--KAALEAQNA 120
>gi|327272096|ref|XP_003220822.1| PREDICTED: CUGBP Elav-like family member 2-like isoform 3 [Anolis
carolinensis]
Length = 487
Score = 74.3 bits (181), Expect = 8e-12, Method: Composition-based stats.
Identities = 39/72 (54%), Positives = 48/72 (66%), Gaps = 4/72 (5%)
Query: 21 EQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTG--QSKGKIFEAAFL 78
+QPDPD IKMFVGQIPRS E +L ++F YG VY INVLRD+ QSKG F +
Sbjct: 51 DQPDPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYT 110
Query: 79 KIARAAIEPQKA 90
+ +AA+E Q A
Sbjct: 111 R--KAALEAQNA 120
>gi|354467970|ref|XP_003496440.1| PREDICTED: CUGBP Elav-like family member 2-like isoform 2
[Cricetulus griseus]
Length = 526
Score = 74.3 bits (181), Expect = 8e-12, Method: Composition-based stats.
Identities = 39/72 (54%), Positives = 48/72 (66%), Gaps = 4/72 (5%)
Query: 21 EQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTG--QSKGKIFEAAFL 78
+QPDPD IKMFVGQIPRS E +L ++F YG VY INVLRD+ QSKG F +
Sbjct: 51 DQPDPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYT 110
Query: 79 KIARAAIEPQKA 90
+ +AA+E Q A
Sbjct: 111 R--KAALEAQNA 120
>gi|74150748|dbj|BAE25504.1| unnamed protein product [Mus musculus]
Length = 486
Score = 74.3 bits (181), Expect = 8e-12, Method: Composition-based stats.
Identities = 37/77 (48%), Positives = 51/77 (66%), Gaps = 4/77 (5%)
Query: 16 SMSLPEQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTG--QSKGKIF 73
++ P+QPD D IKMFVGQ+PR+ E DL ++F +YG VY IN+LRD+ QSKG F
Sbjct: 4 TLDHPDQPDLDAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINILRDRSQNPPQSKGCCF 63
Query: 74 EAAFLKIARAAIEPQKA 90
+ + +AA+E Q A
Sbjct: 64 VTFYTR--KAALEAQNA 78
>gi|402879617|ref|XP_003903428.1| PREDICTED: CUGBP Elav-like family member 2 isoform 4 [Papio anubis]
Length = 533
Score = 74.3 bits (181), Expect = 8e-12, Method: Composition-based stats.
Identities = 39/72 (54%), Positives = 48/72 (66%), Gaps = 4/72 (5%)
Query: 21 EQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTG--QSKGKIFEAAFL 78
+QPDPD IKMFVGQIPRS E +L ++F YG VY INVLRD+ QSKG F +
Sbjct: 40 DQPDPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYT 99
Query: 79 KIARAAIEPQKA 90
+ +AA+E Q A
Sbjct: 100 R--KAALEAQNA 109
>gi|116007320|ref|NP_001036356.1| bruno-2, isoform E [Drosophila melanogaster]
gi|442627593|ref|NP_001260411.1| bruno-2, isoform L [Drosophila melanogaster]
gi|113194979|gb|ABI31310.1| bruno-2, isoform E [Drosophila melanogaster]
gi|440213741|gb|AGB92946.1| bruno-2, isoform L [Drosophila melanogaster]
Length = 893
Score = 74.3 bits (181), Expect = 9e-12, Method: Composition-based stats.
Identities = 36/73 (49%), Positives = 50/73 (68%), Gaps = 2/73 (2%)
Query: 18 SLPEQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAAF 77
S+ +QPD D IKMFVGQIP++ DE L +MF ++G V+ +NVLRDKVT S+G F +
Sbjct: 285 SIKDQPDADNIKMFVGQIPKTWDETRLRQMFEQFGPVHTLNVLRDKVTSISRGCCFVTYY 344
Query: 78 LKIARAAIEPQKA 90
+ +AA+ Q A
Sbjct: 345 TR--KAALRAQDA 355
Score = 39.7 bits (91), Expect = 0.25, Method: Composition-based stats.
Identities = 19/45 (42%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 29 KMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
K+FVG + + EAD+ ++F+ +G + VLRD+ GQSKG F
Sbjct: 383 KLFVGMLNKKYTEADVRQLFTGHGTIEECTVLRDQ-AGQSKGCAF 426
>gi|74140245|dbj|BAE33820.1| unnamed protein product [Mus musculus]
Length = 486
Score = 74.3 bits (181), Expect = 9e-12, Method: Composition-based stats.
Identities = 37/77 (48%), Positives = 51/77 (66%), Gaps = 4/77 (5%)
Query: 16 SMSLPEQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTG--QSKGKIF 73
++ P+QPD D IKMFVGQ+PR+ E DL ++F +YG VY IN+LRD+ QSKG F
Sbjct: 4 TLDHPDQPDLDAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINILRDRSQNPPQSKGCCF 63
Query: 74 EAAFLKIARAAIEPQKA 90
+ + +AA+E Q A
Sbjct: 64 VTFYTR--KAALEAQNA 78
>gi|149022602|gb|EDL79496.1| CUG triplet repeat, RNA binding protein 1, isoform CRA_a [Rattus
norvegicus]
Length = 513
Score = 74.3 bits (181), Expect = 9e-12, Method: Composition-based stats.
Identities = 37/77 (48%), Positives = 51/77 (66%), Gaps = 4/77 (5%)
Query: 16 SMSLPEQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTG--QSKGKIF 73
++ P+QPD D IKMFVGQ+PR+ E DL ++F +YG VY IN+LRD+ QSKG F
Sbjct: 31 TLDHPDQPDLDAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINILRDRSQNPPQSKGCCF 90
Query: 74 EAAFLKIARAAIEPQKA 90
+ + +AA+E Q A
Sbjct: 91 VTFYTR--KAALEAQNA 105
>gi|38570086|ref|NP_059064.2| CUGBP Elav-like family member 1 isoform 1 [Mus musculus]
gi|148695567|gb|EDL27514.1| CUG triplet repeat, RNA binding protein 1, isoform CRA_c [Mus
musculus]
Length = 513
Score = 74.3 bits (181), Expect = 9e-12, Method: Composition-based stats.
Identities = 37/77 (48%), Positives = 51/77 (66%), Gaps = 4/77 (5%)
Query: 16 SMSLPEQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTG--QSKGKIF 73
++ P+QPD D IKMFVGQ+PR+ E DL ++F +YG VY IN+LRD+ QSKG F
Sbjct: 31 TLDHPDQPDLDAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINILRDRSQNPPQSKGCCF 90
Query: 74 EAAFLKIARAAIEPQKA 90
+ + +AA+E Q A
Sbjct: 91 VTFYTR--KAALEAQNA 105
>gi|195472353|ref|XP_002088465.1| GE18583 [Drosophila yakuba]
gi|194174566|gb|EDW88177.1| GE18583 [Drosophila yakuba]
Length = 430
Score = 74.3 bits (181), Expect = 9e-12, Method: Composition-based stats.
Identities = 36/73 (49%), Positives = 50/73 (68%), Gaps = 2/73 (2%)
Query: 18 SLPEQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAAF 77
S+ +QPD D IKMFVGQIP++ DE L +MF ++G V+ +NVLRDKVT S+G F +
Sbjct: 301 SIKDQPDADNIKMFVGQIPKTWDETRLRQMFEQFGPVHTLNVLRDKVTSISRGCCFVTYY 360
Query: 78 LKIARAAIEPQKA 90
+ +AA+ Q A
Sbjct: 361 TR--KAALRAQDA 371
>gi|285002208|ref|NP_001165444.1| CUG triplet repeat, RNA binding protein 2-b [Xenopus laevis]
gi|1568645|gb|AAB09041.1| Etr-3 [Xenopus laevis]
Length = 538
Score = 74.3 bits (181), Expect = 9e-12, Method: Composition-based stats.
Identities = 39/72 (54%), Positives = 47/72 (65%), Gaps = 4/72 (5%)
Query: 21 EQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTG--QSKGKIFEAAFL 78
+QPDPD IKMFVGQIPRS E +L +F YG VY INVLRD+ QSKG F +
Sbjct: 51 DQPDPDAIKMFVGQIPRSWSEKELKDLFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYT 110
Query: 79 KIARAAIEPQKA 90
+ +AA+E Q A
Sbjct: 111 R--KAALEAQNA 120
>gi|354469942|ref|XP_003497371.1| PREDICTED: CUGBP Elav-like family member 1-like [Cricetulus
griseus]
Length = 513
Score = 74.3 bits (181), Expect = 9e-12, Method: Composition-based stats.
Identities = 37/77 (48%), Positives = 51/77 (66%), Gaps = 4/77 (5%)
Query: 16 SMSLPEQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTG--QSKGKIF 73
++ P+QPD D IKMFVGQ+PR+ E DL ++F +YG VY IN+LRD+ QSKG F
Sbjct: 31 TLDHPDQPDLDAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINILRDRSQNPPQSKGCCF 90
Query: 74 EAAFLKIARAAIEPQKA 90
+ + +AA+E Q A
Sbjct: 91 VTFYTR--KAALEAQNA 105
>gi|344247846|gb|EGW03950.1| CUG-BP- and ETR-3-like factor 1 [Cricetulus griseus]
Length = 514
Score = 74.3 bits (181), Expect = 9e-12, Method: Composition-based stats.
Identities = 37/77 (48%), Positives = 51/77 (66%), Gaps = 4/77 (5%)
Query: 16 SMSLPEQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTG--QSKGKIF 73
++ P+QPD D IKMFVGQ+PR+ E DL ++F +YG VY IN+LRD+ QSKG F
Sbjct: 31 TLDHPDQPDLDAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINILRDRSQNPPQSKGCCF 90
Query: 74 EAAFLKIARAAIEPQKA 90
+ + +AA+E Q A
Sbjct: 91 VTFYTR--KAALEAQNA 105
>gi|344281041|ref|XP_003412289.1| PREDICTED: CUGBP Elav-like family member 1-like [Loxodonta
africana]
Length = 512
Score = 73.9 bits (180), Expect = 1e-11, Method: Composition-based stats.
Identities = 38/77 (49%), Positives = 51/77 (66%), Gaps = 4/77 (5%)
Query: 16 SMSLPEQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTG--QSKGKIF 73
++ P+QPD D IKMFVGQ+PR+ E DL ++F +YG VY INVLRD+ QSKG F
Sbjct: 31 TLDHPDQPDLDAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCF 90
Query: 74 EAAFLKIARAAIEPQKA 90
+ + +AA+E Q A
Sbjct: 91 VTFYTR--KAALEAQNA 105
>gi|207028384|ref|NP_001128707.1| CUGBP, Elav-like family member 2 [Xenopus laevis]
gi|197359134|gb|ACH69783.1| RNA binding protein Bruno-like 3b [Xenopus laevis]
Length = 493
Score = 73.9 bits (180), Expect = 1e-11, Method: Composition-based stats.
Identities = 39/72 (54%), Positives = 47/72 (65%), Gaps = 4/72 (5%)
Query: 21 EQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTG--QSKGKIFEAAFL 78
+QPDPD IKMFVGQIPRS E +L +F YG VY INVLRD+ QSKG F +
Sbjct: 51 DQPDPDAIKMFVGQIPRSWSEKELKDLFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYT 110
Query: 79 KIARAAIEPQKA 90
+ +AA+E Q A
Sbjct: 111 R--KAALEAQNA 120
>gi|148225362|ref|NP_001079593.1| CUGBP Elav-like family member 2 [Xenopus laevis]
gi|82241541|sp|Q7ZXE2.1|CELF2_XENLA RecName: Full=CUGBP Elav-like family member 2; Short=CELF-2;
AltName: Full=Bruno-like protein 3; AltName: Full=CUG
triplet repeat RNA-binding protein 2; Short=CUG-BP2;
AltName: Full=CUG-BP- and ETR-3-like factor 2; AltName:
Full=ELAV-type RNA-binding protein 3; Short=ETR-3;
AltName: Full=RNA-binding protein BRUNOL-3
gi|27924438|gb|AAH45035.1| Cugbp2-A-prov protein [Xenopus laevis]
Length = 536
Score = 73.9 bits (180), Expect = 1e-11, Method: Composition-based stats.
Identities = 39/72 (54%), Positives = 47/72 (65%), Gaps = 4/72 (5%)
Query: 21 EQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTG--QSKGKIFEAAFL 78
+QPDPD IKMFVGQIPRS E +L +F YG VY INVLRD+ QSKG F +
Sbjct: 51 DQPDPDAIKMFVGQIPRSWSEKELKDLFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYT 110
Query: 79 KIARAAIEPQKA 90
+ +AA+E Q A
Sbjct: 111 R--KAALEAQNA 120
>gi|195578723|ref|XP_002079213.1| GD23831 [Drosophila simulans]
gi|194191222|gb|EDX04798.1| GD23831 [Drosophila simulans]
Length = 166
Score = 73.9 bits (180), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 36/73 (49%), Positives = 50/73 (68%), Gaps = 2/73 (2%)
Query: 18 SLPEQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAAF 77
S+ +QPD D IKMFVGQIP++ DE L +MF ++G V+ +NVLRDKVT S+G F +
Sbjct: 42 SIKDQPDADNIKMFVGQIPKTWDETRLRQMFEQFGPVHTLNVLRDKVTSISRGCCFVTYY 101
Query: 78 LKIARAAIEPQKA 90
+ +AA+ Q A
Sbjct: 102 TR--KAALRAQDA 112
>gi|35903017|ref|NP_919382.1| CUGBP Elav-like family member 2 [Danio rerio]
gi|19909954|dbj|BAB87828.1| elav-type ribonucleoprotein-3 [Danio rerio]
Length = 486
Score = 73.9 bits (180), Expect = 1e-11, Method: Composition-based stats.
Identities = 38/72 (52%), Positives = 48/72 (66%), Gaps = 4/72 (5%)
Query: 21 EQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTG--QSKGKIFEAAFL 78
+QPDPD IKMFVGQIPRS E +L ++F YG VY IN+LRD+ QSKG F +
Sbjct: 9 DQPDPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINILRDRSQNPPQSKGCCFVTFYT 68
Query: 79 KIARAAIEPQKA 90
+ +AA+E Q A
Sbjct: 69 R--KAALEAQNA 78
>gi|403255513|ref|XP_003920470.1| PREDICTED: CUGBP Elav-like family member 1 [Saimiri boliviensis
boliviensis]
Length = 597
Score = 73.9 bits (180), Expect = 1e-11, Method: Composition-based stats.
Identities = 38/77 (49%), Positives = 51/77 (66%), Gaps = 4/77 (5%)
Query: 16 SMSLPEQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTG--QSKGKIF 73
++ P+QPD D IKMFVGQ+PR+ E DL ++F +YG VY INVLRD+ QSKG F
Sbjct: 170 TLDHPDQPDLDAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCF 229
Query: 74 EAAFLKIARAAIEPQKA 90
+ + +AA+E Q A
Sbjct: 230 VTFYTR--KAALEAQNA 244
>gi|195435051|ref|XP_002065515.1| GK15495 [Drosophila willistoni]
gi|194161600|gb|EDW76501.1| GK15495 [Drosophila willistoni]
Length = 758
Score = 73.9 bits (180), Expect = 1e-11, Method: Composition-based stats.
Identities = 35/70 (50%), Positives = 48/70 (68%), Gaps = 2/70 (2%)
Query: 21 EQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAAFLKI 80
+QPD D IKMFVGQIP++ DE L +MF ++G V+ +NVLRDKVT S+G F + +
Sbjct: 277 DQPDADNIKMFVGQIPKTWDETKLRRMFEQFGHVHTLNVLRDKVTSISRGCCFVTYYTR- 335
Query: 81 ARAAIEPQKA 90
+AA+ Q A
Sbjct: 336 -KAALRAQDA 344
Score = 41.2 bits (95), Expect = 0.083, Method: Composition-based stats.
Identities = 20/45 (44%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Query: 29 KMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
K+FVG + + EAD+ ++F+ +G + VLRD+V GQSKG F
Sbjct: 372 KLFVGMLNKKYTEADVRQLFTGHGTIEECTVLRDQV-GQSKGCAF 415
>gi|66269431|gb|AAY43160.1| napor protein long isoform [Danio rerio]
Length = 493
Score = 73.9 bits (180), Expect = 1e-11, Method: Composition-based stats.
Identities = 38/72 (52%), Positives = 48/72 (66%), Gaps = 4/72 (5%)
Query: 21 EQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTG--QSKGKIFEAAFL 78
+QPDPD IKMFVGQIPRS E +L ++F YG VY IN+LRD+ QSKG F +
Sbjct: 41 DQPDPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINILRDRSQNPPQSKGCCFVTFYT 100
Query: 79 KIARAAIEPQKA 90
+ +AA+E Q A
Sbjct: 101 R--KAALEAQNA 110
>gi|82237387|sp|Q6P0B1.1|CELF2_DANRE RecName: Full=CUGBP Elav-like family member 2; Short=CELF-2;
AltName: Full=Bruno-like protein 3; AltName: Full=CUG
triplet repeat RNA-binding protein 2; Short=CUG-BP2;
AltName: Full=CUG-BP- and ETR-3-like factor 2; AltName:
Full=ELAV-type RNA-binding protein 3; Short=ETR-3;
AltName: Full=RNA-binding protein BRUNOL-3
gi|41351000|gb|AAH65686.1| Cugbp2 protein [Danio rerio]
Length = 514
Score = 73.9 bits (180), Expect = 1e-11, Method: Composition-based stats.
Identities = 38/72 (52%), Positives = 48/72 (66%), Gaps = 4/72 (5%)
Query: 21 EQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTG--QSKGKIFEAAFL 78
+QPDPD IKMFVGQIPRS E +L ++F YG VY IN+LRD+ QSKG F +
Sbjct: 37 DQPDPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINILRDRSQNPPQSKGCCFVTFYT 96
Query: 79 KIARAAIEPQKA 90
+ +AA+E Q A
Sbjct: 97 R--KAALEAQNA 106
>gi|432944122|ref|XP_004083333.1| PREDICTED: CUGBP Elav-like family member 2-like [Oryzias latipes]
Length = 578
Score = 73.9 bits (180), Expect = 1e-11, Method: Composition-based stats.
Identities = 38/72 (52%), Positives = 48/72 (66%), Gaps = 4/72 (5%)
Query: 21 EQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTG--QSKGKIFEAAFL 78
+QPDPD IKMFVGQIPRS E +L ++F YG VY IN+LRD+ QSKG F +
Sbjct: 48 DQPDPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINILRDRSQNPPQSKGCCFVTFYT 107
Query: 79 KIARAAIEPQKA 90
+ +AA+E Q A
Sbjct: 108 R--KAALEAQNA 117
Score = 36.2 bits (82), Expect = 2.8, Method: Composition-based stats.
Identities = 19/61 (31%), Positives = 34/61 (55%), Gaps = 3/61 (4%)
Query: 29 KMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEA--AFLKIARAAIE 86
K+F+G + + +E D+ MFS +G++ +LR G S+G++ A F +I A +
Sbjct: 148 KLFIGMVSKKCNENDIRVMFSAFGQIEECRILRGP-DGLSRGRLQAALQVFARIHLAEVR 206
Query: 87 P 87
P
Sbjct: 207 P 207
>gi|60302694|ref|NP_001012539.1| CUGBP Elav-like family member 1 [Gallus gallus]
gi|60098733|emb|CAH65197.1| hypothetical protein RCJMB04_7f23 [Gallus gallus]
Length = 485
Score = 73.9 bits (180), Expect = 1e-11, Method: Composition-based stats.
Identities = 39/77 (50%), Positives = 51/77 (66%), Gaps = 4/77 (5%)
Query: 16 SMSLPEQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTG--QSKGKIF 73
++ P+QPD D IKMFVGQ+PRS E DL ++F +YG VY INVLRD+ QSKG F
Sbjct: 4 TLDHPDQPDLDAIKMFVGQVPRSWCEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCF 63
Query: 74 EAAFLKIARAAIEPQKA 90
+ + +AA+E Q A
Sbjct: 64 VTFYTR--KAALEAQNA 78
>gi|326920382|ref|XP_003206453.1| PREDICTED: CUGBP Elav-like family member 1-like [Meleagris
gallopavo]
Length = 487
Score = 73.9 bits (180), Expect = 1e-11, Method: Composition-based stats.
Identities = 39/77 (50%), Positives = 51/77 (66%), Gaps = 4/77 (5%)
Query: 16 SMSLPEQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTG--QSKGKIF 73
++ P+QPD D IKMFVGQ+PRS E DL ++F +YG VY INVLRD+ QSKG F
Sbjct: 4 TLDHPDQPDLDAIKMFVGQVPRSWCEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCF 63
Query: 74 EAAFLKIARAAIEPQKA 90
+ + +AA+E Q A
Sbjct: 64 VTFYTR--KAALEAQNA 78
>gi|152013389|sp|Q5F3T7.2|CELF1_CHICK RecName: Full=CUGBP Elav-like family member 1; Short=CELF-1;
AltName: Full=Bruno-like protein 2; AltName: Full=CUG
triplet repeat RNA-binding protein 1; Short=CUG-BP1;
AltName: Full=CUG-BP- and ETR-3-like factor 1; AltName:
Full=RNA-binding protein BRUNOL-2
Length = 489
Score = 73.9 bits (180), Expect = 1e-11, Method: Composition-based stats.
Identities = 39/77 (50%), Positives = 51/77 (66%), Gaps = 4/77 (5%)
Query: 16 SMSLPEQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTG--QSKGKIF 73
++ P+QPD D IKMFVGQ+PRS E DL ++F +YG VY INVLRD+ QSKG F
Sbjct: 4 TLDHPDQPDLDAIKMFVGQVPRSWCEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCF 63
Query: 74 EAAFLKIARAAIEPQKA 90
+ + +AA+E Q A
Sbjct: 64 VTFYTR--KAALEAQNA 78
>gi|145306680|gb|ABP57104.1| CUG binding protein 1 [Gallus gallus]
Length = 487
Score = 73.9 bits (180), Expect = 1e-11, Method: Composition-based stats.
Identities = 39/77 (50%), Positives = 51/77 (66%), Gaps = 4/77 (5%)
Query: 16 SMSLPEQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTG--QSKGKIF 73
++ P+QPD D IKMFVGQ+PRS E DL ++F +YG VY INVLRD+ QSKG F
Sbjct: 4 TLDHPDQPDLDAIKMFVGQVPRSWCEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCF 63
Query: 74 EAAFLKIARAAIEPQKA 90
+ + +AA+E Q A
Sbjct: 64 VTFYTR--KAALEAQNA 78
>gi|449502234|ref|XP_002199924.2| PREDICTED: CUGBP Elav-like family member 1 [Taeniopygia guttata]
Length = 485
Score = 73.9 bits (180), Expect = 1e-11, Method: Composition-based stats.
Identities = 39/77 (50%), Positives = 51/77 (66%), Gaps = 4/77 (5%)
Query: 16 SMSLPEQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTG--QSKGKIF 73
++ P+QPD D IKMFVGQ+PRS E DL ++F +YG VY INVLRD+ QSKG F
Sbjct: 4 TLDHPDQPDLDAIKMFVGQVPRSWCEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCF 63
Query: 74 EAAFLKIARAAIEPQKA 90
+ + +AA+E Q A
Sbjct: 64 VTFYTR--KAALEAQNA 78
>gi|449274607|gb|EMC83685.1| CUG-BP- and ETR-3-like factor 1 [Columba livia]
Length = 515
Score = 73.9 bits (180), Expect = 1e-11, Method: Composition-based stats.
Identities = 39/77 (50%), Positives = 51/77 (66%), Gaps = 4/77 (5%)
Query: 16 SMSLPEQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTG--QSKGKIF 73
++ P+QPD D IKMFVGQ+PRS E DL ++F +YG VY INVLRD+ QSKG F
Sbjct: 31 TLDHPDQPDLDAIKMFVGQVPRSWCEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCF 90
Query: 74 EAAFLKIARAAIEPQKA 90
+ + +AA+E Q A
Sbjct: 91 VTFYTR--KAALEAQNA 105
>gi|355677608|gb|AER96038.1| CUG triplet repeat, RNA binding protein 2 [Mustela putorius furo]
Length = 94
Score = 73.9 bits (180), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 39/72 (54%), Positives = 48/72 (66%), Gaps = 4/72 (5%)
Query: 21 EQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTG--QSKGKIFEAAFL 78
+QPDPD IKMFVGQIPRS E +L ++F YG VY INVLRD+ QSKG F +
Sbjct: 16 DQPDPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYT 75
Query: 79 KIARAAIEPQKA 90
+ +AA+E Q A
Sbjct: 76 R--KAALEAQNA 85
>gi|386769531|ref|NP_001246000.1| bruno-2, isoform G [Drosophila melanogaster]
gi|442627595|ref|NP_723742.2| bruno-2, isoform M [Drosophila melanogaster]
gi|383291458|gb|AFH03674.1| bruno-2, isoform G [Drosophila melanogaster]
gi|440213742|gb|AAF53180.4| bruno-2, isoform M [Drosophila melanogaster]
Length = 664
Score = 73.9 bits (180), Expect = 1e-11, Method: Composition-based stats.
Identities = 36/73 (49%), Positives = 50/73 (68%), Gaps = 2/73 (2%)
Query: 18 SLPEQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAAF 77
S+ +QPD D IKMFVGQIP++ DE L +MF ++G V+ +NVLRDKVT S+G F +
Sbjct: 285 SIKDQPDADNIKMFVGQIPKTWDETRLRQMFEQFGPVHTLNVLRDKVTSISRGCCFVTYY 344
Query: 78 LKIARAAIEPQKA 90
+ +AA+ Q A
Sbjct: 345 TR--KAALRAQDA 355
Score = 39.3 bits (90), Expect = 0.30, Method: Composition-based stats.
Identities = 19/45 (42%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 29 KMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
K+FVG + + EAD+ ++F+ +G + VLRD+ GQSKG F
Sbjct: 383 KLFVGMLNKKYTEADVRQLFTGHGTIEECTVLRDQ-AGQSKGCAF 426
>gi|410918516|ref|XP_003972731.1| PREDICTED: CUGBP Elav-like family member 2-like isoform 1 [Takifugu
rubripes]
Length = 521
Score = 73.9 bits (180), Expect = 1e-11, Method: Composition-based stats.
Identities = 38/72 (52%), Positives = 48/72 (66%), Gaps = 4/72 (5%)
Query: 21 EQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTG--QSKGKIFEAAFL 78
+QPDPD IKMFVGQIPRS E +L ++F YG VY IN+LRD+ QSKG F +
Sbjct: 41 DQPDPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINILRDRSQNPPQSKGCCFVTFYT 100
Query: 79 KIARAAIEPQKA 90
+ +AA+E Q A
Sbjct: 101 R--KAALEAQNA 110
>gi|348521218|ref|XP_003448123.1| PREDICTED: CUGBP Elav-like family member 2-like [Oreochromis
niloticus]
Length = 483
Score = 73.9 bits (180), Expect = 1e-11, Method: Composition-based stats.
Identities = 38/72 (52%), Positives = 48/72 (66%), Gaps = 4/72 (5%)
Query: 21 EQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTG--QSKGKIFEAAFL 78
+QPDPD IKMFVGQIPRS E +L ++F YG VY IN+LRD+ QSKG F +
Sbjct: 9 DQPDPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINILRDRSQNPPQSKGCCFVTFYT 68
Query: 79 KIARAAIEPQKA 90
+ +AA+E Q A
Sbjct: 69 R--KAALEAQNA 78
>gi|66269429|gb|AAY43159.1| napor protein short isoform [Danio rerio]
Length = 473
Score = 73.9 bits (180), Expect = 1e-11, Method: Composition-based stats.
Identities = 38/72 (52%), Positives = 48/72 (66%), Gaps = 4/72 (5%)
Query: 21 EQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTG--QSKGKIFEAAFL 78
+QPDPD IKMFVGQIPRS E +L ++F YG VY IN+LRD+ QSKG F +
Sbjct: 41 DQPDPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINILRDRSQNPPQSKGCCFVTFYT 100
Query: 79 KIARAAIEPQKA 90
+ +AA+E Q A
Sbjct: 101 R--KAALEAQNA 110
>gi|66269433|gb|AAY43161.1| napor protein isoform [Danio rerio]
Length = 483
Score = 73.9 bits (180), Expect = 1e-11, Method: Composition-based stats.
Identities = 38/72 (52%), Positives = 48/72 (66%), Gaps = 4/72 (5%)
Query: 21 EQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTG--QSKGKIFEAAFL 78
+QPDPD IKMFVGQIPRS E +L ++F YG VY IN+LRD+ QSKG F +
Sbjct: 55 DQPDPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINILRDRSQNPPQSKGCCFVTFYT 114
Query: 79 KIARAAIEPQKA 90
+ +AA+E Q A
Sbjct: 115 R--KAALEAQNA 124
>gi|345310083|ref|XP_001515840.2| PREDICTED: CUGBP, Elav-like family member 2 [Ornithorhynchus
anatinus]
Length = 426
Score = 73.9 bits (180), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 39/72 (54%), Positives = 48/72 (66%), Gaps = 4/72 (5%)
Query: 21 EQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTG--QSKGKIFEAAFL 78
+QPDPD IKMFVGQIPRS E +L ++F YG VY INVLRD+ QSKG F +
Sbjct: 51 DQPDPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYT 110
Query: 79 KIARAAIEPQKA 90
+ +AA+E Q A
Sbjct: 111 R--KAALEAQNA 120
Score = 34.7 bits (78), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 25/47 (53%)
Query: 23 PDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSK 69
P P+ +F+ +P+ + D+ +MF +G V + V DK T SK
Sbjct: 336 PGPEGANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSK 382
>gi|60729622|pir||JC7967 Napor protein - zebra fish
gi|14030309|gb|AAK52851.1|AF321194_1 Napor [Danio rerio]
Length = 441
Score = 73.6 bits (179), Expect = 1e-11, Method: Composition-based stats.
Identities = 38/72 (52%), Positives = 48/72 (66%), Gaps = 4/72 (5%)
Query: 21 EQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTG--QSKGKIFEAAFL 78
+QPDPD IKMFVGQIPRS E +L ++F YG VY IN+LRD+ QSKG F +
Sbjct: 9 DQPDPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINILRDRSQNPPQSKGCCFVTFYT 68
Query: 79 KIARAAIEPQKA 90
+ +AA+E Q A
Sbjct: 69 R--KAALEAQNA 78
>gi|8745539|gb|AAF78957.1|AF267535_1 CUG-binding protein LYLQ isoform [Mus musculus]
Length = 486
Score = 73.6 bits (179), Expect = 1e-11, Method: Composition-based stats.
Identities = 37/77 (48%), Positives = 51/77 (66%), Gaps = 4/77 (5%)
Query: 16 SMSLPEQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTG--QSKGKIF 73
++ P+QPD D IKMFVGQ+PR+ E DL ++F +YG VY IN+LRD+ QSKG F
Sbjct: 4 TLDHPDQPDLDAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINILRDRSQNPPQSKGCCF 63
Query: 74 EAAFLKIARAAIEPQKA 90
+ + +AA+E Q A
Sbjct: 64 VTFYTR--KAALEAQNA 78
>gi|119588316|gb|EAW67910.1| CUG triplet repeat, RNA binding protein 1, isoform CRA_e [Homo
sapiens]
Length = 283
Score = 73.6 bits (179), Expect = 1e-11, Method: Composition-based stats.
Identities = 38/77 (49%), Positives = 51/77 (66%), Gaps = 4/77 (5%)
Query: 16 SMSLPEQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTG--QSKGKIF 73
++ P+QPD D IKMFVGQ+PR+ E DL ++F +YG VY INVLRD+ QSKG F
Sbjct: 4 TLDHPDQPDLDAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCF 63
Query: 74 EAAFLKIARAAIEPQKA 90
+ + +AA+E Q A
Sbjct: 64 VTFYTR--KAALEAQNA 78
>gi|410918518|ref|XP_003972732.1| PREDICTED: CUGBP Elav-like family member 2-like isoform 2 [Takifugu
rubripes]
Length = 474
Score = 73.6 bits (179), Expect = 1e-11, Method: Composition-based stats.
Identities = 38/72 (52%), Positives = 48/72 (66%), Gaps = 4/72 (5%)
Query: 21 EQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTG--QSKGKIFEAAFL 78
+QPDPD IKMFVGQIPRS E +L ++F YG VY IN+LRD+ QSKG F +
Sbjct: 41 DQPDPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINILRDRSQNPPQSKGCCFVTFYT 100
Query: 79 KIARAAIEPQKA 90
+ +AA+E Q A
Sbjct: 101 R--KAALEAQNA 110
>gi|148224750|ref|NP_001079970.1| CUGBP Elav-like family member 1-B [Xenopus laevis]
gi|47123025|gb|AAH70706.1| Cugbp1-b protein [Xenopus laevis]
Length = 529
Score = 73.6 bits (179), Expect = 1e-11, Method: Composition-based stats.
Identities = 38/77 (49%), Positives = 50/77 (64%), Gaps = 4/77 (5%)
Query: 16 SMSLPEQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTG--QSKGKIF 73
+M P+ PD D IKMFVGQ+PRS E +L ++F +YG VY INVLRD+ QSKG F
Sbjct: 31 TMDHPDHPDSDSIKMFVGQVPRSWSEKELRELFEQYGAVYEINVLRDRSQNPPQSKGCCF 90
Query: 74 EAAFLKIARAAIEPQKA 90
+ + +AA+E Q A
Sbjct: 91 ITFYTR--KAALEAQNA 105
>gi|350580111|ref|XP_003480751.1| PREDICTED: CUGBP Elav-like family member 1-like [Sus scrofa]
Length = 145
Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/77 (49%), Positives = 51/77 (66%), Gaps = 4/77 (5%)
Query: 16 SMSLPEQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTG--QSKGKIF 73
++ P+QPD D IKMFVGQ+PR+ E DL ++F +YG VY INVLRD+ QSKG F
Sbjct: 4 TLDHPDQPDLDAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCF 63
Query: 74 EAAFLKIARAAIEPQKA 90
+ + +AA+E Q A
Sbjct: 64 VTFYTR--KAALEAQNA 78
>gi|410918520|ref|XP_003972733.1| PREDICTED: CUGBP Elav-like family member 2-like isoform 3 [Takifugu
rubripes]
Length = 501
Score = 73.6 bits (179), Expect = 1e-11, Method: Composition-based stats.
Identities = 38/72 (52%), Positives = 48/72 (66%), Gaps = 4/72 (5%)
Query: 21 EQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTG--QSKGKIFEAAFL 78
+QPDPD IKMFVGQIPRS E +L ++F YG VY IN+LRD+ QSKG F +
Sbjct: 41 DQPDPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINILRDRSQNPPQSKGCCFVTFYT 100
Query: 79 KIARAAIEPQKA 90
+ +AA+E Q A
Sbjct: 101 R--KAALEAQNA 110
>gi|296481531|tpg|DAA23646.1| TPA: CUG-BP- and ETR-3-like factor 2 [Bos taurus]
Length = 104
Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 39/72 (54%), Positives = 48/72 (66%), Gaps = 4/72 (5%)
Query: 21 EQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTG--QSKGKIFEAAFL 78
+QPDPD IKMFVGQIPRS E +L ++F YG VY INVLRD+ QSKG F +
Sbjct: 28 DQPDPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYT 87
Query: 79 KIARAAIEPQKA 90
+ +AA+E Q A
Sbjct: 88 R--KAALEAQNA 97
>gi|19921186|ref|NP_609559.1| bruno-2, isoform A [Drosophila melanogaster]
gi|17862264|gb|AAL39609.1| LD19052p [Drosophila melanogaster]
gi|22946323|gb|AAF53181.2| bruno-2, isoform A [Drosophila melanogaster]
gi|220943144|gb|ACL84115.1| bru-2-PA [synthetic construct]
Length = 632
Score = 73.6 bits (179), Expect = 2e-11, Method: Composition-based stats.
Identities = 36/73 (49%), Positives = 50/73 (68%), Gaps = 2/73 (2%)
Query: 18 SLPEQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAAF 77
S+ +QPD D IKMFVGQIP++ DE L +MF ++G V+ +NVLRDKVT S+G F +
Sbjct: 285 SIKDQPDADNIKMFVGQIPKTWDETRLRQMFEQFGPVHTLNVLRDKVTSISRGCCFVTYY 344
Query: 78 LKIARAAIEPQKA 90
+ +AA+ Q A
Sbjct: 345 TR--KAALRAQDA 355
Score = 39.3 bits (90), Expect = 0.33, Method: Composition-based stats.
Identities = 19/45 (42%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 29 KMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
K+FVG + + EAD+ ++F+ +G + VLRD+ GQSKG F
Sbjct: 383 KLFVGMLNKKYTEADVRQLFTGHGTIEECTVLRDQ-AGQSKGCAF 426
>gi|194861277|ref|XP_001969747.1| GG23780 [Drosophila erecta]
gi|190661614|gb|EDV58806.1| GG23780 [Drosophila erecta]
Length = 646
Score = 73.6 bits (179), Expect = 2e-11, Method: Composition-based stats.
Identities = 36/73 (49%), Positives = 50/73 (68%), Gaps = 2/73 (2%)
Query: 18 SLPEQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAAF 77
S+ +QPD D IKMFVGQIP++ DE L +MF ++G V+ +NVLRDKVT S+G F +
Sbjct: 301 SIKDQPDADNIKMFVGQIPKTWDETRLRQMFEQFGAVHTLNVLRDKVTSISRGCCFVTYY 360
Query: 78 LKIARAAIEPQKA 90
+ +AA+ Q A
Sbjct: 361 TR--KAALRAQDA 371
Score = 38.9 bits (89), Expect = 0.38, Method: Composition-based stats.
Identities = 19/45 (42%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 29 KMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
K+FVG + + EAD+ ++F+ +G + VLRD+ GQSKG F
Sbjct: 399 KLFVGMLNKKYTEADVRQLFTGHGTIEECTVLRDQ-AGQSKGCAF 442
>gi|432862983|ref|XP_004069969.1| PREDICTED: CUGBP Elav-like family member 2-like [Oryzias latipes]
Length = 462
Score = 73.6 bits (179), Expect = 2e-11, Method: Composition-based stats.
Identities = 38/77 (49%), Positives = 50/77 (64%), Gaps = 4/77 (5%)
Query: 16 SMSLPEQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTG--QSKGKIF 73
S+ +QPDPD IKMFVGQIPRS E +L ++F +G VY IN+LRD+ QSKG F
Sbjct: 34 SLEHMDQPDPDAIKMFVGQIPRSWTETELKELFEPFGAVYQINILRDRAQNPPQSKGCCF 93
Query: 74 EAAFLKIARAAIEPQKA 90
+ + +AA+E Q A
Sbjct: 94 VTFYTR--KAALEAQNA 108
Score = 34.7 bits (78), Expect = 8.1, Method: Composition-based stats.
Identities = 16/55 (29%), Positives = 30/55 (54%)
Query: 15 RSMSLPEQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSK 69
+S++ ++ P+ +F+ +P+ + DL +MF +G V + V DK T SK
Sbjct: 364 QSIAGSQKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSK 418
>gi|118151448|ref|NP_001071633.1| CUGBP Elav-like family member 2 [Bos taurus]
gi|86438238|gb|AAI12806.1| CUG triplet repeat, RNA binding protein 2 [Bos taurus]
Length = 142
Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 39/72 (54%), Positives = 48/72 (66%), Gaps = 4/72 (5%)
Query: 21 EQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTG--QSKGKIFEAAFL 78
+QPDPD IKMFVGQIPRS E +L ++F YG VY INVLRD+ QSKG F +
Sbjct: 28 DQPDPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYT 87
Query: 79 KIARAAIEPQKA 90
+ +AA+E Q A
Sbjct: 88 R--KAALEAQNA 97
>gi|28574145|ref|NP_788039.1| bruno-2, isoform D [Drosophila melanogaster]
gi|442627591|ref|NP_001260410.1| bruno-2, isoform K [Drosophila melanogaster]
gi|28380348|gb|AAO41184.1| bruno-2, isoform D [Drosophila melanogaster]
gi|440213740|gb|AGB92945.1| bruno-2, isoform K [Drosophila melanogaster]
Length = 737
Score = 73.6 bits (179), Expect = 2e-11, Method: Composition-based stats.
Identities = 36/73 (49%), Positives = 50/73 (68%), Gaps = 2/73 (2%)
Query: 18 SLPEQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAAF 77
S+ +QPD D IKMFVGQIP++ DE L +MF ++G V+ +NVLRDKVT S+G F +
Sbjct: 285 SIKDQPDADNIKMFVGQIPKTWDETRLRQMFEQFGPVHTLNVLRDKVTSISRGCCFVTYY 344
Query: 78 LKIARAAIEPQKA 90
+ +AA+ Q A
Sbjct: 345 TR--KAALRAQDA 355
Score = 38.9 bits (89), Expect = 0.35, Method: Composition-based stats.
Identities = 19/45 (42%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 29 KMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
K+FVG + + EAD+ ++F+ +G + VLRD+ GQSKG F
Sbjct: 383 KLFVGMLNKKYTEADVRQLFTGHGTIEECTVLRDQ-AGQSKGCAF 426
>gi|341896837|gb|EGT52772.1| CBN-ETR-1 protein [Caenorhabditis brenneri]
Length = 585
Score = 73.6 bits (179), Expect = 2e-11, Method: Composition-based stats.
Identities = 36/71 (50%), Positives = 47/71 (66%), Gaps = 2/71 (2%)
Query: 20 PEQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAAFLK 79
P +PD D IKMFVGQIPR+ +E D ++F +YG V++ N+LRDK T SKG F F +
Sbjct: 40 PSEPDSDTIKMFVGQIPRNWNEVDCRRLFEQYGPVFSCNILRDKSTQASKGCCFVTFFHR 99
Query: 80 IARAAIEPQKA 90
+ AIE Q A
Sbjct: 100 --KDAIEAQGA 108
Score = 42.7 bits (99), Expect = 0.031, Method: Composition-based stats.
Identities = 18/45 (40%), Positives = 34/45 (75%), Gaps = 1/45 (2%)
Query: 29 KMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
K+F+GQ+ + +E +L ++FS+YG++ + +VLRD+ G+S+G F
Sbjct: 136 KLFIGQLSKKHNEENLREIFSKYGQIEDCSVLRDQ-DGKSRGCAF 179
Score = 35.0 bits (79), Expect = 5.0, Method: Composition-based stats.
Identities = 15/45 (33%), Positives = 24/45 (53%)
Query: 25 PDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSK 69
PD +F+ +P+ + DL F+ +G + + V DKVT SK
Sbjct: 497 PDGANLFIYHLPQDFGDTDLINTFAPFGAILSAKVFIDKVTNLSK 541
>gi|82237708|sp|Q6PF35.1|CEL1B_XENLA RecName: Full=CUGBP Elav-like family member 1-B; Short=CELF-1B;
AltName: Full=Bruno-like protein 2-B; AltName: Full=CUG
triplet repeat RNA-binding protein 1-B;
Short=CUG-BP1-B; AltName: Full=CUG-BP- and ETR-3-like
factor 1-B; AltName: Full=Embryo deadenylation
element-binding protein B; Short=EDEN-BP-B; AltName:
Full=RNA-binding protein BRUNOL-2-B; AltName:
Full=p53/p55
gi|34784678|gb|AAH57743.1| Cugbp1-b protein [Xenopus laevis]
Length = 489
Score = 73.6 bits (179), Expect = 2e-11, Method: Composition-based stats.
Identities = 38/77 (49%), Positives = 50/77 (64%), Gaps = 4/77 (5%)
Query: 16 SMSLPEQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTG--QSKGKIF 73
+M P+ PD D IKMFVGQ+PRS E +L ++F +YG VY INVLRD+ QSKG F
Sbjct: 4 TMDHPDHPDSDSIKMFVGQVPRSWSEKELRELFEQYGAVYEINVLRDRSQNPPQSKGCCF 63
Query: 74 EAAFLKIARAAIEPQKA 90
+ + +AA+E Q A
Sbjct: 64 ITFYTR--KAALEAQNA 78
>gi|198474578|ref|XP_002132716.1| GA25729 [Drosophila pseudoobscura pseudoobscura]
gi|198138450|gb|EDY70118.1| GA25729 [Drosophila pseudoobscura pseudoobscura]
Length = 140
Score = 73.2 bits (178), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/72 (50%), Positives = 49/72 (68%), Gaps = 2/72 (2%)
Query: 19 LPEQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAAFL 78
L +QPD D IKMFVGQIP++ DE L +MF ++G V+ +NVLRDKVT S+G F +
Sbjct: 24 LKDQPDADNIKMFVGQIPKTWDETRLRQMFEQFGPVHTLNVLRDKVTSISRGCCFVTYYT 83
Query: 79 KIARAAIEPQKA 90
+ +AA+ Q A
Sbjct: 84 R--KAALRAQDA 93
>gi|194385422|dbj|BAG65088.1| unnamed protein product [Homo sapiens]
gi|194389686|dbj|BAG61804.1| unnamed protein product [Homo sapiens]
Length = 159
Score = 73.2 bits (178), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 39/72 (54%), Positives = 48/72 (66%), Gaps = 4/72 (5%)
Query: 21 EQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTG--QSKGKIFEAAFL 78
+QPDPD IKMFVGQIPRS E +L ++F YG VY INVLRD+ QSKG F +
Sbjct: 9 DQPDPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYT 68
Query: 79 KIARAAIEPQKA 90
+ +AA+E Q A
Sbjct: 69 R--KAALEAQNA 78
>gi|47212398|emb|CAF96700.1| unnamed protein product [Tetraodon nigroviridis]
Length = 105
Score = 73.2 bits (178), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/72 (52%), Positives = 48/72 (66%), Gaps = 4/72 (5%)
Query: 21 EQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTG--QSKGKIFEAAFL 78
+QPDPD IKMFVGQIPRS E +L ++F YG VY IN+LRD+ QSKG F +
Sbjct: 19 DQPDPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINILRDRSQNPPQSKGCCFVTFYT 78
Query: 79 KIARAAIEPQKA 90
+ +AA+E Q A
Sbjct: 79 R--KAALEAQNA 88
>gi|195148186|ref|XP_002015055.1| GL18624 [Drosophila persimilis]
gi|194107008|gb|EDW29051.1| GL18624 [Drosophila persimilis]
Length = 764
Score = 73.2 bits (178), Expect = 2e-11, Method: Composition-based stats.
Identities = 36/72 (50%), Positives = 49/72 (68%), Gaps = 2/72 (2%)
Query: 19 LPEQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAAFL 78
L +QPD D IKMFVGQIP++ DE L +MF ++G V+ +NVLRDKVT S+G F +
Sbjct: 314 LKDQPDADNIKMFVGQIPKTWDETRLRQMFEQFGPVHTLNVLRDKVTSISRGCCFVTYYT 373
Query: 79 KIARAAIEPQKA 90
+ +AA+ Q A
Sbjct: 374 R--KAALRAQDA 383
Score = 39.3 bits (90), Expect = 0.29, Method: Composition-based stats.
Identities = 19/45 (42%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 29 KMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
K+FVG + + EAD+ ++F+ +G + VLRD+ GQSKG F
Sbjct: 411 KLFVGMLNKKYTEADVRQLFTGHGTIEECTVLRDQ-AGQSKGCAF 454
>gi|228480217|ref|NP_001153184.1| CUGBP Elav-like family member 2 isoform 1 [Pongo abelii]
gi|55733625|emb|CAH93489.1| hypothetical protein [Pongo abelii]
Length = 514
Score = 73.2 bits (178), Expect = 2e-11, Method: Composition-based stats.
Identities = 38/72 (52%), Positives = 48/72 (66%), Gaps = 4/72 (5%)
Query: 21 EQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTG--QSKGKIFEAAFL 78
+QPDPD IKMFVGQIPRS E +L ++F YG VY I+VLRD+ QSKG F +
Sbjct: 33 DQPDPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQIDVLRDRSQNPPQSKGCCFVTFYT 92
Query: 79 KIARAAIEPQKA 90
+ +AA+E Q A
Sbjct: 93 R--KAALEAQNA 102
>gi|410908161|ref|XP_003967559.1| PREDICTED: CUGBP Elav-like family member 2-like isoform 6 [Takifugu
rubripes]
Length = 538
Score = 72.8 bits (177), Expect = 2e-11, Method: Composition-based stats.
Identities = 37/77 (48%), Positives = 51/77 (66%), Gaps = 4/77 (5%)
Query: 16 SMSLPEQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTG--QSKGKIF 73
S+ +QPDPD IKMFVGQIPR+ E +L ++F +G V+ IN+LRD+ T QSKG F
Sbjct: 46 SLEHLDQPDPDAIKMFVGQIPRAWSETELRELFEPFGAVHQINILRDRTTNPPQSKGCCF 105
Query: 74 EAAFLKIARAAIEPQKA 90
+ + +AA+E Q A
Sbjct: 106 VTFYTR--KAALEAQNA 120
Score = 34.3 bits (77), Expect = 9.4, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 5/57 (8%)
Query: 29 KMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAAFLKIARAAI 85
K+F+G + + E ++ MFS +G++ VLR GQS+G AF+ A A+
Sbjct: 151 KLFIGMVSKKYGENEIRMMFSSFGQIEECRVLRGP-DGQSRG----CAFVTFATRAM 202
>gi|195351037|ref|XP_002042043.1| GM26785 [Drosophila sechellia]
gi|194123867|gb|EDW45910.1| GM26785 [Drosophila sechellia]
Length = 644
Score = 72.8 bits (177), Expect = 3e-11, Method: Composition-based stats.
Identities = 36/73 (49%), Positives = 50/73 (68%), Gaps = 2/73 (2%)
Query: 18 SLPEQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAAF 77
S+ +QPD D IKMFVGQIP++ DE L +MF ++G V+ +NVLRDKVT S+G F +
Sbjct: 297 SIKDQPDADNIKMFVGQIPKTWDETRLRQMFEQFGPVHTLNVLRDKVTSISRGCCFVTYY 356
Query: 78 LKIARAAIEPQKA 90
+ +AA+ Q A
Sbjct: 357 TR--KAALRAQDA 367
Score = 38.9 bits (89), Expect = 0.44, Method: Composition-based stats.
Identities = 19/45 (42%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 29 KMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
K+FVG + + EAD+ ++F+ +G + VLRD+ GQSKG F
Sbjct: 395 KLFVGMLNKKYTEADVRQLFTGHGTIEECTVLRDQ-AGQSKGCAF 438
>gi|410908151|ref|XP_003967554.1| PREDICTED: CUGBP Elav-like family member 2-like isoform 1 [Takifugu
rubripes]
Length = 530
Score = 72.8 bits (177), Expect = 3e-11, Method: Composition-based stats.
Identities = 37/77 (48%), Positives = 51/77 (66%), Gaps = 4/77 (5%)
Query: 16 SMSLPEQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTG--QSKGKIF 73
S+ +QPDPD IKMFVGQIPR+ E +L ++F +G V+ IN+LRD+ T QSKG F
Sbjct: 46 SLEHLDQPDPDAIKMFVGQIPRAWSETELRELFEPFGAVHQINILRDRTTNPPQSKGCCF 105
Query: 74 EAAFLKIARAAIEPQKA 90
+ + +AA+E Q A
Sbjct: 106 VTFYTR--KAALEAQNA 120
>gi|410908155|ref|XP_003967556.1| PREDICTED: CUGBP Elav-like family member 2-like isoform 3 [Takifugu
rubripes]
Length = 468
Score = 72.8 bits (177), Expect = 3e-11, Method: Composition-based stats.
Identities = 37/77 (48%), Positives = 51/77 (66%), Gaps = 4/77 (5%)
Query: 16 SMSLPEQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTG--QSKGKIF 73
S+ +QPDPD IKMFVGQIPR+ E +L ++F +G V+ IN+LRD+ T QSKG F
Sbjct: 32 SLEHLDQPDPDAIKMFVGQIPRAWSETELRELFEPFGAVHQINILRDRTTNPPQSKGCCF 91
Query: 74 EAAFLKIARAAIEPQKA 90
+ + +AA+E Q A
Sbjct: 92 VTFYTR--KAALEAQNA 106
>gi|45383614|ref|NP_989591.1| CUGBP Elav-like family member 2 [Gallus gallus]
gi|31747199|gb|AAP57761.1| ELAV-type RNA-binding protein 3 variant 4 [Gallus gallus]
Length = 488
Score = 72.4 bits (176), Expect = 3e-11, Method: Composition-based stats.
Identities = 38/72 (52%), Positives = 47/72 (65%), Gaps = 4/72 (5%)
Query: 21 EQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTG--QSKGKIFEAAFL 78
+QPDPD IK FVGQIPRS E +L ++F YG VY INVLRD+ QSKG F +
Sbjct: 9 DQPDPDAIKTFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYT 68
Query: 79 KIARAAIEPQKA 90
+ +AA+E Q A
Sbjct: 69 R--KAALEAQNA 78
>gi|410908153|ref|XP_003967555.1| PREDICTED: CUGBP Elav-like family member 2-like isoform 2 [Takifugu
rubripes]
Length = 510
Score = 72.4 bits (176), Expect = 3e-11, Method: Composition-based stats.
Identities = 37/77 (48%), Positives = 51/77 (66%), Gaps = 4/77 (5%)
Query: 16 SMSLPEQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTG--QSKGKIF 73
S+ +QPDPD IKMFVGQIPR+ E +L ++F +G V+ IN+LRD+ T QSKG F
Sbjct: 28 SLEHLDQPDPDAIKMFVGQIPRAWSETELRELFEPFGAVHQINILRDRTTNPPQSKGCCF 87
Query: 74 EAAFLKIARAAIEPQKA 90
+ + +AA+E Q A
Sbjct: 88 VTFYTR--KAALEAQNA 102
>gi|410908159|ref|XP_003967558.1| PREDICTED: CUGBP Elav-like family member 2-like isoform 5 [Takifugu
rubripes]
Length = 490
Score = 72.4 bits (176), Expect = 3e-11, Method: Composition-based stats.
Identities = 37/77 (48%), Positives = 51/77 (66%), Gaps = 4/77 (5%)
Query: 16 SMSLPEQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTG--QSKGKIF 73
S+ +QPDPD IKMFVGQIPR+ E +L ++F +G V+ IN+LRD+ T QSKG F
Sbjct: 46 SLEHLDQPDPDAIKMFVGQIPRAWSETELRELFEPFGAVHQINILRDRTTNPPQSKGCCF 105
Query: 74 EAAFLKIARAAIEPQKA 90
+ + +AA+E Q A
Sbjct: 106 VTFYTR--KAALEAQNA 120
>gi|152013390|sp|Q7T2T1.2|CELF2_CHICK RecName: Full=CUGBP Elav-like family member 2; Short=CELF-2;
AltName: Full=Bruno-like protein 3; AltName: Full=CUG
triplet repeat RNA-binding protein 2; Short=CUG-BP2;
AltName: Full=CUG-BP- and ETR-3-like factor 2; AltName:
Full=ELAV-type RNA-binding protein 3; Short=ETR-3;
AltName: Full=RNA-binding protein BRUNOL-3
gi|31747201|gb|AAP57762.1| ELAV-type RNA-binding protein 3 variant L [Gallus gallus]
Length = 484
Score = 72.4 bits (176), Expect = 3e-11, Method: Composition-based stats.
Identities = 38/72 (52%), Positives = 47/72 (65%), Gaps = 4/72 (5%)
Query: 21 EQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTG--QSKGKIFEAAFL 78
+QPDPD IK FVGQIPRS E +L ++F YG VY INVLRD+ QSKG F +
Sbjct: 9 DQPDPDAIKTFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYT 68
Query: 79 KIARAAIEPQKA 90
+ +AA+E Q A
Sbjct: 69 R--KAALEAQNA 78
>gi|410908157|ref|XP_003967557.1| PREDICTED: CUGBP Elav-like family member 2-like isoform 4 [Takifugu
rubripes]
Length = 482
Score = 72.4 bits (176), Expect = 4e-11, Method: Composition-based stats.
Identities = 37/77 (48%), Positives = 51/77 (66%), Gaps = 4/77 (5%)
Query: 16 SMSLPEQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTG--QSKGKIF 73
S+ +QPDPD IKMFVGQIPR+ E +L ++F +G V+ IN+LRD+ T QSKG F
Sbjct: 46 SLEHLDQPDPDAIKMFVGQIPRAWSETELRELFEPFGAVHQINILRDRTTNPPQSKGCCF 105
Query: 74 EAAFLKIARAAIEPQKA 90
+ + +AA+E Q A
Sbjct: 106 VTFYTR--KAALEAQNA 120
>gi|151936113|gb|ABS18833.1| ELAV-type RNA binding protein variant B [Caenorhabditis elegans]
Length = 193
Score = 72.0 bits (175), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 35/71 (49%), Positives = 46/71 (64%), Gaps = 2/71 (2%)
Query: 20 PEQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAAFLK 79
P +PD D IKMFVGQIPR +E D ++F +YG V++ N+LRDK T SKG F + +
Sbjct: 47 PSEPDTDAIKMFVGQIPRQWNETDCRRLFEKYGSVFSCNILRDKSTQASKGCCFVTFYHR 106
Query: 80 IARAAIEPQKA 90
+ AIE Q A
Sbjct: 107 --KDAIEAQGA 115
Score = 41.2 bits (95), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 37/52 (71%), Gaps = 2/52 (3%)
Query: 29 KMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAAFLKI 80
K+F+GQ+ + +E +L ++F+++G + + +VLRD+ G+S+G + AA K+
Sbjct: 143 KLFIGQLSKKHNEENLREIFAKFGHIEDCSVLRDQ-DGKSRG-MLSAACCKV 192
>gi|193204854|ref|NP_001122632.1| Protein ETR-1, isoform g [Caenorhabditis elegans]
gi|151936119|gb|ABS18836.1| ELAV-type RNA binding protein variant E [Caenorhabditis elegans]
gi|351063348|emb|CCD71503.1| Protein ETR-1, isoform g [Caenorhabditis elegans]
Length = 513
Score = 72.0 bits (175), Expect = 4e-11, Method: Composition-based stats.
Identities = 35/71 (49%), Positives = 46/71 (64%), Gaps = 2/71 (2%)
Query: 20 PEQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAAFLK 79
P +PD D IKMFVGQIPR +E D ++F +YG V++ N+LRDK T SKG F + +
Sbjct: 47 PSEPDTDAIKMFVGQIPRQWNETDCRRLFEKYGSVFSCNILRDKSTQASKGCCFVTFYHR 106
Query: 80 IARAAIEPQKA 90
+ AIE Q A
Sbjct: 107 --KDAIEAQGA 115
Score = 39.7 bits (91), Expect = 0.25, Method: Composition-based stats.
Identities = 16/45 (35%), Positives = 33/45 (73%), Gaps = 1/45 (2%)
Query: 29 KMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
K+F+GQ+ + +E +L ++F+++G + + +VLRD+ G+S+G F
Sbjct: 143 KLFIGQLSKKHNEENLREIFAKFGHIEDCSVLRDQ-DGKSRGCAF 186
Score = 35.4 bits (80), Expect = 4.2, Method: Composition-based stats.
Identities = 15/45 (33%), Positives = 25/45 (55%)
Query: 25 PDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSK 69
PD +F+ +P+ ++DL F+ +G + + V DKVT SK
Sbjct: 425 PDGANLFIYHLPQDFGDSDLINTFAPFGGILSAKVFIDKVTNLSK 469
>gi|17532857|ref|NP_493673.1| Protein ETR-1, isoform a [Caenorhabditis elegans]
gi|1289522|gb|AAA98566.1| elav-type ribonucleoprotein [Caenorhabditis elegans]
gi|151936111|gb|ABS18832.1| ELAV-type RNA binding protein variant A [Caenorhabditis elegans]
gi|351063336|emb|CCD71491.1| Protein ETR-1, isoform a [Caenorhabditis elegans]
Length = 584
Score = 72.0 bits (175), Expect = 4e-11, Method: Composition-based stats.
Identities = 35/71 (49%), Positives = 46/71 (64%), Gaps = 2/71 (2%)
Query: 20 PEQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAAFLK 79
P +PD D IKMFVGQIPR +E D ++F +YG V++ N+LRDK T SKG F + +
Sbjct: 47 PSEPDTDAIKMFVGQIPRQWNETDCRRLFEKYGSVFSCNILRDKSTQASKGCCFVTFYHR 106
Query: 80 IARAAIEPQKA 90
+ AIE Q A
Sbjct: 107 --KDAIEAQGA 115
Score = 39.7 bits (91), Expect = 0.26, Method: Composition-based stats.
Identities = 16/45 (35%), Positives = 33/45 (73%), Gaps = 1/45 (2%)
Query: 29 KMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
K+F+GQ+ + +E +L ++F+++G + + +VLRD+ G+S+G F
Sbjct: 143 KLFIGQLSKKHNEENLREIFAKFGHIEDCSVLRDQ-DGKSRGCAF 186
Score = 35.4 bits (80), Expect = 4.3, Method: Composition-based stats.
Identities = 15/45 (33%), Positives = 25/45 (55%)
Query: 25 PDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSK 69
PD +F+ +P+ ++DL F+ +G + + V DKVT SK
Sbjct: 496 PDGANLFIYHLPQDFGDSDLINTFAPFGGILSAKVFIDKVTNLSK 540
>gi|387916084|gb|AFK11651.1| CUGBP Elav-like family member 2 isoform 2 [Callorhinchus milii]
Length = 513
Score = 72.0 bits (175), Expect = 4e-11, Method: Composition-based stats.
Identities = 38/72 (52%), Positives = 48/72 (66%), Gaps = 4/72 (5%)
Query: 21 EQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTG--QSKGKIFEAAFL 78
+QPDPD IKMFVGQIPRS E +L ++F YG V+ INVLRD+ QSKG F +
Sbjct: 39 DQPDPDAIKMFVGQIPRSWTEKELKELFEPYGAVHQINVLRDRSQNPPQSKGCCFVTFYT 98
Query: 79 KIARAAIEPQKA 90
+ +AA+E Q A
Sbjct: 99 R--KAALEAQNA 108
>gi|194761398|ref|XP_001962916.1| GF14193 [Drosophila ananassae]
gi|190616613|gb|EDV32137.1| GF14193 [Drosophila ananassae]
Length = 519
Score = 72.0 bits (175), Expect = 4e-11, Method: Composition-based stats.
Identities = 36/73 (49%), Positives = 49/73 (67%), Gaps = 2/73 (2%)
Query: 18 SLPEQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAAF 77
S+ +QPD D IKMFVGQIP++ DE L MF ++G V+ +NVLRDKVT S+G F +
Sbjct: 410 SIKDQPDADNIKMFVGQIPKTWDETRLRHMFEQFGPVHTLNVLRDKVTSISRGCCFVTYY 469
Query: 78 LKIARAAIEPQKA 90
+ +AA+ Q A
Sbjct: 470 TR--KAALRAQDA 480
>gi|195035649|ref|XP_001989288.1| GH11645 [Drosophila grimshawi]
gi|193905288|gb|EDW04155.1| GH11645 [Drosophila grimshawi]
Length = 791
Score = 72.0 bits (175), Expect = 5e-11, Method: Composition-based stats.
Identities = 35/70 (50%), Positives = 48/70 (68%), Gaps = 2/70 (2%)
Query: 21 EQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAAFLKI 80
+QPD D IKMFVGQIP++ DE L +F ++GRV+ +NVLRDKVT S+G F + +
Sbjct: 306 DQPDADNIKMFVGQIPKTWDEIKLRCLFEQFGRVHTLNVLRDKVTSISRGCCFVTYYTR- 364
Query: 81 ARAAIEPQKA 90
+AA+ Q A
Sbjct: 365 -KAALRAQDA 373
Score = 40.8 bits (94), Expect = 0.10, Method: Composition-based stats.
Identities = 20/45 (44%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Query: 29 KMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
K+FVG + + EAD+ ++F+ +G + VLRD+V GQSKG F
Sbjct: 401 KLFVGMLNKKYTEADVRQLFAGHGTIEECTVLRDQV-GQSKGCAF 444
>gi|193204848|ref|NP_001122629.1| Protein ETR-1, isoform d [Caenorhabditis elegans]
gi|351063344|emb|CCD71499.1| Protein ETR-1, isoform d [Caenorhabditis elegans]
Length = 535
Score = 72.0 bits (175), Expect = 5e-11, Method: Composition-based stats.
Identities = 35/71 (49%), Positives = 46/71 (64%), Gaps = 2/71 (2%)
Query: 20 PEQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAAFLK 79
P +PD D IKMFVGQIPR +E D ++F +YG V++ N+LRDK T SKG F + +
Sbjct: 47 PSEPDTDAIKMFVGQIPRQWNETDCRRLFEKYGSVFSCNILRDKSTQASKGCCFVTFYHR 106
Query: 80 IARAAIEPQKA 90
+ AIE Q A
Sbjct: 107 --KDAIEAQGA 115
Score = 39.3 bits (90), Expect = 0.28, Method: Composition-based stats.
Identities = 16/45 (35%), Positives = 33/45 (73%), Gaps = 1/45 (2%)
Query: 29 KMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
K+F+GQ+ + +E +L ++F+++G + + +VLRD+ G+S+G F
Sbjct: 143 KLFIGQLSKKHNEENLREIFAKFGHIEDCSVLRDQ-DGKSRGCAF 186
Score = 35.4 bits (80), Expect = 4.6, Method: Composition-based stats.
Identities = 15/45 (33%), Positives = 25/45 (55%)
Query: 25 PDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSK 69
PD +F+ +P+ ++DL F+ +G + + V DKVT SK
Sbjct: 447 PDGANLFIYHLPQDFGDSDLINTFAPFGGILSAKVFIDKVTNLSK 491
>gi|193204850|ref|NP_001122630.1| Protein ETR-1, isoform e [Caenorhabditis elegans]
gi|351063346|emb|CCD71501.1| Protein ETR-1, isoform e [Caenorhabditis elegans]
Length = 586
Score = 71.6 bits (174), Expect = 5e-11, Method: Composition-based stats.
Identities = 35/71 (49%), Positives = 46/71 (64%), Gaps = 2/71 (2%)
Query: 20 PEQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAAFLK 79
P +PD D IKMFVGQIPR +E D ++F +YG V++ N+LRDK T SKG F + +
Sbjct: 47 PSEPDTDAIKMFVGQIPRQWNETDCRRLFEKYGSVFSCNILRDKSTQASKGCCFVTFYHR 106
Query: 80 IARAAIEPQKA 90
+ AIE Q A
Sbjct: 107 --KDAIEAQGA 115
Score = 39.3 bits (90), Expect = 0.29, Method: Composition-based stats.
Identities = 16/45 (35%), Positives = 33/45 (73%), Gaps = 1/45 (2%)
Query: 29 KMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
K+F+GQ+ + +E +L ++F+++G + + +VLRD+ G+S+G F
Sbjct: 143 KLFIGQLSKKHNEENLREIFAKFGHIEDCSVLRDQ-DGKSRGCAF 186
Score = 35.4 bits (80), Expect = 4.8, Method: Composition-based stats.
Identities = 15/45 (33%), Positives = 25/45 (55%)
Query: 25 PDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSK 69
PD +F+ +P+ ++DL F+ +G + + V DKVT SK
Sbjct: 498 PDGANLFIYHLPQDFGDSDLINTFAPFGGILSAKVFIDKVTNLSK 542
>gi|348513017|ref|XP_003444039.1| PREDICTED: CUGBP Elav-like family member 2-like [Oreochromis
niloticus]
Length = 531
Score = 71.6 bits (174), Expect = 5e-11, Method: Composition-based stats.
Identities = 37/77 (48%), Positives = 50/77 (64%), Gaps = 4/77 (5%)
Query: 16 SMSLPEQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTG--QSKGKIF 73
S+ +QPDPD IKMFVGQIPRS E +L ++F +G V+ IN+LRD+ QSKG F
Sbjct: 48 SLEHLDQPDPDSIKMFVGQIPRSWSETELKELFEPFGAVHQINILRDRTQNPPQSKGCCF 107
Query: 74 EAAFLKIARAAIEPQKA 90
+ + +AA+E Q A
Sbjct: 108 VTFYTR--KAALEAQNA 122
>gi|351699026|gb|EHB01945.1| CUG-BP- and ETR-3-like factor 1 [Heterocephalus glaber]
Length = 483
Score = 71.6 bits (174), Expect = 5e-11, Method: Composition-based stats.
Identities = 34/75 (45%), Positives = 47/75 (62%)
Query: 16 SMSLPEQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEA 75
++ P+QPD D IKMFVGQ+PR+ E DL ++F +YG VY INVLRD+ + K +
Sbjct: 4 TLDHPDQPDLDAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCS 63
Query: 76 AFLKIARAAIEPQKA 90
+AA+E Q A
Sbjct: 64 VTFYTRKAALEAQNA 78
>gi|193204852|ref|NP_001122631.1| Protein ETR-1, isoform f [Caenorhabditis elegans]
gi|351063347|emb|CCD71502.1| Protein ETR-1, isoform f [Caenorhabditis elegans]
Length = 588
Score = 71.6 bits (174), Expect = 5e-11, Method: Composition-based stats.
Identities = 35/71 (49%), Positives = 46/71 (64%), Gaps = 2/71 (2%)
Query: 20 PEQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAAFLK 79
P +PD D IKMFVGQIPR +E D ++F +YG V++ N+LRDK T SKG F + +
Sbjct: 47 PSEPDTDAIKMFVGQIPRQWNETDCRRLFEKYGSVFSCNILRDKSTQASKGCCFVTFYHR 106
Query: 80 IARAAIEPQKA 90
+ AIE Q A
Sbjct: 107 --KDAIEAQGA 115
Score = 39.3 bits (90), Expect = 0.29, Method: Composition-based stats.
Identities = 16/45 (35%), Positives = 33/45 (73%), Gaps = 1/45 (2%)
Query: 29 KMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
K+F+GQ+ + +E +L ++F+++G + + +VLRD+ G+S+G F
Sbjct: 143 KLFIGQLSKKHNEENLREIFAKFGHIEDCSVLRDQ-DGKSRGCAF 186
Score = 35.4 bits (80), Expect = 4.8, Method: Composition-based stats.
Identities = 15/45 (33%), Positives = 25/45 (55%)
Query: 25 PDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSK 69
PD +F+ +P+ ++DL F+ +G + + V DKVT SK
Sbjct: 500 PDGANLFIYHLPQDFGDSDLINTFAPFGGILSAKVFIDKVTNLSK 544
>gi|151936117|gb|ABS18835.1| ELAV-type RNA binding protein variant D [Caenorhabditis elegans]
Length = 327
Score = 71.2 bits (173), Expect = 7e-11, Method: Composition-based stats.
Identities = 35/71 (49%), Positives = 46/71 (64%), Gaps = 2/71 (2%)
Query: 20 PEQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAAFLK 79
P +PD D IKMFVGQIPR +E D ++F +YG V++ N+LRDK T SKG F + +
Sbjct: 47 PSEPDTDAIKMFVGQIPRQWNETDCRRLFEKYGSVFSCNILRDKSTQASKGCCFVTFYHR 106
Query: 80 IARAAIEPQKA 90
+ AIE Q A
Sbjct: 107 --KDAIEAQGA 115
Score = 39.3 bits (90), Expect = 0.34, Method: Composition-based stats.
Identities = 16/45 (35%), Positives = 33/45 (73%), Gaps = 1/45 (2%)
Query: 29 KMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
K+F+GQ+ + +E +L ++F+++G + + +VLRD+ G+S+G F
Sbjct: 143 KLFIGQLSKKHNEENLREIFAKFGHIEDCSVLRDQ-DGKSRGCAF 186
>gi|151936115|gb|ABS18834.1| ELAV-type RNA binding protein variant C [Caenorhabditis elegans]
Length = 378
Score = 71.2 bits (173), Expect = 7e-11, Method: Composition-based stats.
Identities = 35/71 (49%), Positives = 46/71 (64%), Gaps = 2/71 (2%)
Query: 20 PEQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAAFLK 79
P +PD D IKMFVGQIPR +E D ++F +YG V++ N+LRDK T SKG F + +
Sbjct: 47 PSEPDTDAIKMFVGQIPRQWNETDCRRLFEKYGSVFSCNILRDKSTQASKGCCFVTFYHR 106
Query: 80 IARAAIEPQKA 90
+ AIE Q A
Sbjct: 107 --KDAIEAQGA 115
Score = 39.3 bits (90), Expect = 0.34, Method: Composition-based stats.
Identities = 16/45 (35%), Positives = 33/45 (73%), Gaps = 1/45 (2%)
Query: 29 KMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
K+F+GQ+ + +E +L ++F+++G + + +VLRD+ G+S+G F
Sbjct: 143 KLFIGQLSKKHNEENLREIFAKFGHIEDCSVLRDQ-DGKSRGCAF 186
>gi|410930632|ref|XP_003978702.1| PREDICTED: CUGBP Elav-like family member 1-like [Takifugu
rubripes]
Length = 376
Score = 71.2 bits (173), Expect = 7e-11, Method: Composition-based stats.
Identities = 39/77 (50%), Positives = 49/77 (63%), Gaps = 4/77 (5%)
Query: 16 SMSLPEQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTG--QSKGKIF 73
S+ P+QPD D IKMFVGQIPRS E L ++F YG VY INVLRD+ QSKG F
Sbjct: 4 SLDHPDQPDVDAIKMFVGQIPRSWSEEQLRELFEPYGVVYEINVLRDRSQNPPQSKGCCF 63
Query: 74 EAAFLKIARAAIEPQKA 90
+ + ++A+E Q A
Sbjct: 64 VTYYTR--KSALEAQNA 78
>gi|348545316|ref|XP_003460126.1| PREDICTED: CUGBP Elav-like family member 1-like isoform 2
[Oreochromis niloticus]
Length = 485
Score = 71.2 bits (173), Expect = 8e-11, Method: Composition-based stats.
Identities = 39/77 (50%), Positives = 49/77 (63%), Gaps = 4/77 (5%)
Query: 16 SMSLPEQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTG--QSKGKIF 73
S+ P+QPD D IKMFVGQIPRS E L ++F YG VY INVLRD+ QSKG F
Sbjct: 4 SLDHPDQPDIDAIKMFVGQIPRSWSEEQLRELFEPYGAVYEINVLRDRSQNPPQSKGCCF 63
Query: 74 EAAFLKIARAAIEPQKA 90
+ + ++A+E Q A
Sbjct: 64 VTYYSR--KSALEAQNA 78
>gi|410931355|ref|XP_003979061.1| PREDICTED: CUGBP Elav-like family member 1-like [Takifugu rubripes]
Length = 378
Score = 71.2 bits (173), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 49/77 (63%), Gaps = 4/77 (5%)
Query: 16 SMSLPEQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTG--QSKGKIF 73
S+ P+QPD D IKMFVGQIPRS E L ++F YG VY INVLRD+ QSKG F
Sbjct: 31 SLDHPDQPDVDAIKMFVGQIPRSWSEEQLRELFEPYGVVYEINVLRDRSQNPPQSKGCCF 90
Query: 74 EAAFLKIARAAIEPQKA 90
+ + ++A+E Q A
Sbjct: 91 VTYYTR--KSALEAQNA 105
Score = 34.3 bits (77), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 29 KMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
K+F+G I + +E D+ MFS YG++ +LR G S+G F
Sbjct: 135 KLFIGMISKKCNENDIRLMFSPYGQIEECRILRGP-DGLSRGCAF 178
>gi|348545314|ref|XP_003460125.1| PREDICTED: CUGBP Elav-like family member 1-like isoform 1
[Oreochromis niloticus]
Length = 509
Score = 70.9 bits (172), Expect = 1e-10, Method: Composition-based stats.
Identities = 39/77 (50%), Positives = 49/77 (63%), Gaps = 4/77 (5%)
Query: 16 SMSLPEQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTG--QSKGKIF 73
S+ P+QPD D IKMFVGQIPRS E L ++F YG VY INVLRD+ QSKG F
Sbjct: 31 SLDHPDQPDIDAIKMFVGQIPRSWSEEQLRELFEPYGAVYEINVLRDRSQNPPQSKGCCF 90
Query: 74 EAAFLKIARAAIEPQKA 90
+ + ++A+E Q A
Sbjct: 91 VTYYSR--KSALEAQNA 105
>gi|18858491|ref|NP_571688.1| CUGBP Elav-like family member 1 [Danio rerio]
gi|82247731|sp|Q9IBD0.1|CELF1_DANRE RecName: Full=CUGBP Elav-like family member 1; Short=CELF-1;
AltName: Full=Bruno-like protein 2; AltName: Full=CUG
triplet repeat RNA-binding protein 1; Short=CUG-BP1;
AltName: Full=CUG-BP- and ETR-3-like factor 1; AltName:
Full=EDEN-BP/Bruno-like protein; AltName:
Full=RNA-binding protein BRUNOL-2
gi|7670538|dbj|BAA95119.1| brul [Danio rerio]
Length = 501
Score = 69.7 bits (169), Expect = 2e-10, Method: Composition-based stats.
Identities = 38/77 (49%), Positives = 49/77 (63%), Gaps = 4/77 (5%)
Query: 16 SMSLPEQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTG--QSKGKIF 73
S+ P+QPD D IKMFVGQIPR+ E L ++F YG VY INVLRD+ QSKG F
Sbjct: 4 SLDHPDQPDIDSIKMFVGQIPRTWSEDQLRELFEPYGAVYEINVLRDRSQNPPQSKGCCF 63
Query: 74 EAAFLKIARAAIEPQKA 90
+ + ++A+E Q A
Sbjct: 64 VTYYTR--KSALEAQNA 78
>gi|29436780|gb|AAH49453.1| Cugbp1 protein [Danio rerio]
Length = 534
Score = 69.7 bits (169), Expect = 2e-10, Method: Composition-based stats.
Identities = 38/77 (49%), Positives = 49/77 (63%), Gaps = 4/77 (5%)
Query: 16 SMSLPEQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTG--QSKGKIF 73
S+ P+QPD D IKMFVGQIPR+ E L ++F YG VY INVLRD+ QSKG F
Sbjct: 42 SLDHPDQPDIDSIKMFVGQIPRTWSEDQLRELFEPYGAVYEINVLRDRSQNPPQSKGCCF 101
Query: 74 EAAFLKIARAAIEPQKA 90
+ + ++A+E Q A
Sbjct: 102 VTYYTR--KSALEAQNA 116
>gi|324507732|gb|ADY43273.1| CUGBP Elav family member 1-A [Ascaris suum]
gi|324510717|gb|ADY44479.1| CUGBP Elav family member 1-A, partial [Ascaris suum]
Length = 594
Score = 69.3 bits (168), Expect = 2e-10, Method: Composition-based stats.
Identities = 31/56 (55%), Positives = 39/56 (69%)
Query: 18 SLPEQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
S +PDPD IKMFVGQIPRS E + ++F ++G VY +NVLRDK T S+G F
Sbjct: 27 STAREPDPDTIKMFVGQIPRSWGEQECRELFEQFGSVYQLNVLRDKTTQASRGCCF 82
Score = 36.2 bits (82), Expect = 2.7, Method: Composition-based stats.
Identities = 16/45 (35%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Query: 29 KMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
K+FVG + + + E D+ MF+ +G + + VL+D G+S+G F
Sbjct: 125 KLFVGMLNKRLTEEDVKAMFAHFGHIEDCTVLKDS-DGKSRGCAF 168
Score = 34.3 bits (77), Expect = 8.9, Method: Composition-based stats.
Identities = 15/45 (33%), Positives = 24/45 (53%)
Query: 25 PDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSK 69
PD +F+ +P+ ++DL FS +G + + V DK T SK
Sbjct: 490 PDGCNLFIYHLPQDFADSDLVTTFSPFGNILSAKVFIDKQTNLSK 534
>gi|324508266|gb|ADY43493.1| CUGBP Elav family member 1-A [Ascaris suum]
Length = 539
Score = 69.3 bits (168), Expect = 2e-10, Method: Composition-based stats.
Identities = 31/56 (55%), Positives = 39/56 (69%)
Query: 18 SLPEQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
S +PDPD IKMFVGQIPRS E + ++F ++G VY +NVLRDK T S+G F
Sbjct: 27 STAREPDPDTIKMFVGQIPRSWGEQECRELFEQFGSVYQLNVLRDKTTQASRGCCF 82
Score = 36.2 bits (82), Expect = 2.7, Method: Composition-based stats.
Identities = 16/45 (35%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Query: 29 KMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
K+FVG + + + E D+ MF+ +G + + VL+D G+S+G F
Sbjct: 125 KLFVGMLNKRLTEEDVKAMFAHFGHIEDCTVLKDS-DGKSRGCAF 168
Score = 34.3 bits (77), Expect = 8.9, Method: Composition-based stats.
Identities = 15/45 (33%), Positives = 24/45 (53%)
Query: 25 PDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSK 69
PD +F+ +P+ ++DL FS +G + + V DK T SK
Sbjct: 435 PDGCNLFIYHLPQDFADSDLVTTFSPFGNILSAKVFIDKQTNLSK 479
>gi|444724379|gb|ELW64984.1| CUGBP Elav-like family member 2 [Tupaia chinensis]
Length = 585
Score = 69.3 bits (168), Expect = 3e-10, Method: Composition-based stats.
Identities = 33/52 (63%), Positives = 38/52 (73%), Gaps = 2/52 (3%)
Query: 21 EQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTG--QSKG 70
+QPDPD IKMFVGQIPRS E +L ++F YG VY INVLRD+ QSKG
Sbjct: 93 DQPDPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKG 144
>gi|312068271|ref|XP_003137136.1| hypothetical protein LOAG_01549 [Loa loa]
gi|307767708|gb|EFO26942.1| hypothetical protein LOAG_01549 [Loa loa]
Length = 528
Score = 68.9 bits (167), Expect = 3e-10, Method: Composition-based stats.
Identities = 32/57 (56%), Positives = 41/57 (71%)
Query: 17 MSLPEQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
+S +PDPD IKMFVGQIPRS EA+ ++F ++G V +NVLRDKVT S+G F
Sbjct: 11 VSSAREPDPDAIKMFVGQIPRSWGEAECRELFEQFGSVCQLNVLRDKVTQASRGCCF 67
Score = 34.7 bits (78), Expect = 6.6, Method: Composition-based stats.
Identities = 15/45 (33%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 29 KMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
K+FVG + + + E + +MF+++G + + VL+D G+S+G F
Sbjct: 110 KLFVGMLNKKLTEDSVREMFAQFGHIEDCTVLKDS-EGKSRGCAF 153
>gi|432089210|gb|ELK23233.1| CUGBP Elav-like family member 2 [Myotis davidii]
Length = 136
Score = 68.9 bits (167), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/54 (61%), Positives = 39/54 (72%), Gaps = 2/54 (3%)
Query: 21 EQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTG--QSKGKI 72
+QPDPD IKMFVGQIPRS E +L ++F YG VY INVLRD+ QSKG +
Sbjct: 9 DQPDPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGTV 62
>gi|149022604|gb|EDL79498.1| CUG triplet repeat, RNA binding protein 1, isoform CRA_c [Rattus
norvegicus]
Length = 478
Score = 68.9 bits (167), Expect = 4e-10, Method: Composition-based stats.
Identities = 29/59 (49%), Positives = 40/59 (67%)
Query: 16 SMSLPEQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFE 74
++ P+QPD D IKMFVGQ+PR+ E DL ++F +YG VY IN+LRD+ + K E
Sbjct: 4 TLDHPDQPDLDAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINILRDRSQNPPQSKAVE 62
>gi|148695565|gb|EDL27512.1| CUG triplet repeat, RNA binding protein 1, isoform CRA_a [Mus
musculus]
Length = 478
Score = 68.9 bits (167), Expect = 4e-10, Method: Composition-based stats.
Identities = 29/59 (49%), Positives = 40/59 (67%)
Query: 16 SMSLPEQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFE 74
++ P+QPD D IKMFVGQ+PR+ E DL ++F +YG VY IN+LRD+ + K E
Sbjct: 4 TLDHPDQPDLDAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINILRDRSQNPPQSKAVE 62
>gi|393911007|gb|EJD76121.1| hypothetical protein, variant [Loa loa]
Length = 480
Score = 68.9 bits (167), Expect = 4e-10, Method: Composition-based stats.
Identities = 32/57 (56%), Positives = 41/57 (71%)
Query: 17 MSLPEQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
+S +PDPD IKMFVGQIPRS EA+ ++F ++G V +NVLRDKVT S+G F
Sbjct: 11 VSSAREPDPDAIKMFVGQIPRSWGEAECRELFEQFGSVCQLNVLRDKVTQASRGCCF 67
Score = 34.7 bits (78), Expect = 7.0, Method: Composition-based stats.
Identities = 15/45 (33%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 29 KMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
K+FVG + + + E + +MF+++G + + VL+D G+S+G F
Sbjct: 110 KLFVGMLNKKLTEDSVREMFAQFGHIEDCTVLKDS-EGKSRGCAF 153
>gi|351714404|gb|EHB17323.1| CUG-BP- and ETR-3-like factor 1 [Heterocephalus glaber]
Length = 195
Score = 68.6 bits (166), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 36/77 (46%), Positives = 49/77 (63%), Gaps = 4/77 (5%)
Query: 16 SMSLPEQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTG--QSKGKIF 73
++ +QPD D IKMFVGQ+PR+ E DL ++F +YG VY INVLRD+ QSKG
Sbjct: 4 TLDHSDQPDLDAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCS 63
Query: 74 EAAFLKIARAAIEPQKA 90
+ + +AA+E Q A
Sbjct: 64 VTFYTR--KAALEAQNA 78
>gi|402592937|gb|EJW86864.1| ELAV-type RNA binding protein variant B [Wuchereria bancrofti]
Length = 509
Score = 68.6 bits (166), Expect = 5e-10, Method: Composition-based stats.
Identities = 31/52 (59%), Positives = 39/52 (75%)
Query: 22 QPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
+PDPD IKMFVGQIPRS EA+ ++F ++G V +NVLRDKVT S+G F
Sbjct: 16 EPDPDAIKMFVGQIPRSWGEAECRELFEQFGSVCQLNVLRDKVTQTSRGCCF 67
Score = 37.4 bits (85), Expect = 1.2, Method: Composition-based stats.
Identities = 16/45 (35%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Query: 29 KMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
K+FVG + + + E D+ +MF+++G + + VL+D G+S+G F
Sbjct: 110 KLFVGMLNKKLTEDDVREMFAQFGHIEDCTVLKDS-EGKSRGCAF 153
>gi|380807355|gb|AFE75553.1| CUGBP Elav-like family member 6 isoform 1, partial [Macaca
mulatta]
Length = 226
Score = 67.4 bits (163), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 28/50 (56%), Positives = 37/50 (74%)
Query: 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
D D IK+FVGQIPR +DE DL +F E+GR+Y + VL+D++TG KG F
Sbjct: 41 DHDAIKLFVGQIPRGLDEQDLKPLFEEFGRIYELTVLKDRLTGLHKGCAF 90
>gi|391337388|ref|XP_003743051.1| PREDICTED: CUGBP Elav-like family member 2-like [Metaseiulus
occidentalis]
Length = 512
Score = 67.4 bits (163), Expect = 1e-09, Method: Composition-based stats.
Identities = 31/61 (50%), Positives = 45/61 (73%), Gaps = 2/61 (3%)
Query: 28 IKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAAFLKIARAAIEP 87
IKMFVGQIPR+ DE +L +F E+G+V++INVLRDK TG S+G F + + ++A++
Sbjct: 58 IKMFVGQIPRNWDENELRNLFEEFGKVHSINVLRDKATGNSRGCCFVTFYTR--KSALDA 115
Query: 88 Q 88
Q
Sbjct: 116 Q 116
Score = 42.0 bits (97), Expect = 0.051, Method: Composition-based stats.
Identities = 20/45 (44%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Query: 29 KMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
K+F+G + + DE+D+ MFS +G + VLRD GQSKG F
Sbjct: 146 KLFIGMLSKECDESDVRLMFSSFGTIEECTVLRDG-QGQSKGCAF 189
>gi|386769527|ref|NP_001245998.1| bruno-2, isoform F [Drosophila melanogaster]
gi|383291456|gb|AFH03672.1| bruno-2, isoform F [Drosophila melanogaster]
Length = 347
Score = 67.0 bits (162), Expect = 1e-09, Method: Composition-based stats.
Identities = 30/52 (57%), Positives = 40/52 (76%)
Query: 18 SLPEQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSK 69
S+ +QPD D IKMFVGQIP++ DE L +MF ++G V+ +NVLRDKVT S+
Sbjct: 285 SIKDQPDADNIKMFVGQIPKTWDETRLRQMFEQFGPVHTLNVLRDKVTSISR 336
>gi|159164090|pdb|2DGQ|A Chain A, Solution Structure Of The N-Terminal Rna Binding Domain
In Bruno-Like 6 Rna-Binding Protein
Length = 108
Score = 67.0 bits (162), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 28/50 (56%), Positives = 37/50 (74%)
Query: 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
D D IK+FVGQIPR +DE DL +F E+GR+Y + VL+D++TG KG F
Sbjct: 12 DHDAIKLFVGQIPRGLDEQDLKPLFEEFGRIYELTVLKDRLTGLHKGCAF 61
>gi|170592252|ref|XP_001900883.1| RNA recognition motif. [Brugia malayi]
gi|158591750|gb|EDP30354.1| RNA recognition motif [Brugia malayi]
Length = 487
Score = 67.0 bits (162), Expect = 1e-09, Method: Composition-based stats.
Identities = 30/52 (57%), Positives = 38/52 (73%)
Query: 22 QPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
+PDPD IKMFVGQIPRS E + ++F ++G V +NVLRDKVT S+G F
Sbjct: 16 EPDPDAIKMFVGQIPRSWGETECRELFEQFGSVCQLNVLRDKVTQTSRGCCF 67
Score = 35.4 bits (80), Expect = 4.4, Method: Composition-based stats.
Identities = 13/43 (30%), Positives = 27/43 (62%)
Query: 29 KMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGK 71
K+F+G + + + E D+ +MF+++G + + VL+D +GK
Sbjct: 110 KLFIGMLNKKLTEDDVREMFAQFGHIEDCTVLKDSEGKSREGK 152
>gi|359323408|ref|XP_854054.3| PREDICTED: CUGBP, Elav-like family member 6 [Canis lupus
familiaris]
Length = 413
Score = 67.0 bits (162), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 28/50 (56%), Positives = 37/50 (74%)
Query: 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
D D IK+FVGQIPR +DE DL +F E+GR+Y + VL+D++TG KG F
Sbjct: 42 DHDAIKLFVGQIPRGLDEQDLKPLFEEFGRIYELTVLKDRLTGLHKGCAF 91
Score = 37.0 bits (84), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Query: 15 RSMSLPEQP--DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSK 69
+S +LP+Q P+ +F+ +P+ +A+L + F +G V + V D+ T QSK
Sbjct: 313 QSSALPQQQREGPEGCNLFIYHLPQEFGDAELIQTFLPFGAVVSAKVFVDRATNQSK 369
>gi|344248419|gb|EGW04523.1| CUG-BP- and ETR-3-like factor 6 [Cricetulus griseus]
Length = 121
Score = 67.0 bits (162), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 28/50 (56%), Positives = 37/50 (74%)
Query: 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
D D IK+FVGQIPR +DE DL +F E+GR+Y + VL+D++TG KG F
Sbjct: 14 DHDAIKLFVGQIPRGLDEQDLKPLFEEFGRIYELTVLKDRLTGLHKGCAF 63
>gi|444516747|gb|ELV11280.1| Poly [ADP-ribose] polymerase 6 [Tupaia chinensis]
Length = 972
Score = 67.0 bits (162), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 28/50 (56%), Positives = 37/50 (74%)
Query: 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
D D IK+FVGQIPR +DE DL +F E+GR+Y + VL+D++TG KG F
Sbjct: 3 DHDAIKLFVGQIPRGLDEQDLKPLFEEFGRIYELTVLKDRLTGLHKGCAF 52
Score = 38.1 bits (87), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 9/63 (14%)
Query: 16 SMSLPEQPD---------PDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTG 66
S + P+QP P+ +F+ +P+ +A+LT+ F +G V + V D+ T
Sbjct: 237 STACPQQPSALPQQQREGPEGCNLFIYHLPQEFGDAELTQTFLPFGAVVSAKVFVDRATN 296
Query: 67 QSK 69
QSK
Sbjct: 297 QSK 299
>gi|195117928|ref|XP_002003497.1| GI17946 [Drosophila mojavensis]
gi|193914072|gb|EDW12939.1| GI17946 [Drosophila mojavensis]
Length = 580
Score = 67.0 bits (162), Expect = 1e-09, Method: Composition-based stats.
Identities = 29/49 (59%), Positives = 39/49 (79%)
Query: 21 EQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSK 69
+QPD D IKMFVGQIP++ DE L ++F ++GRV+ +NVLRDKVT S+
Sbjct: 293 DQPDADNIKMFVGQIPKTWDELKLRRLFEQFGRVHTLNVLRDKVTSISR 341
>gi|355692855|gb|EHH27458.1| CUGBP Elav-like family member 6, partial [Macaca mulatta]
Length = 389
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 28/50 (56%), Positives = 37/50 (74%)
Query: 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
D D IK+FVGQIPR +DE DL +F E+GR+Y + VL+D++TG KG F
Sbjct: 31 DHDAIKLFVGQIPRGLDEQDLKPLFEEFGRIYELTVLKDRLTGLHKGCAF 80
Score = 36.2 bits (82), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 9/63 (14%)
Query: 16 SMSLPEQPD---------PDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTG 66
S + P+QP P+ +F+ +P+ +A+L + F +G V + V D+ T
Sbjct: 283 STAFPQQPSALPQQQREGPEGCNLFIYHLPQEFGDAELIQTFLPFGAVVSAKVFVDRATN 342
Query: 67 QSK 69
QSK
Sbjct: 343 QSK 345
>gi|321461546|gb|EFX72577.1| hypothetical protein DAPPUDRAFT_326142 [Daphnia pulex]
Length = 229
Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/69 (47%), Positives = 46/69 (66%), Gaps = 6/69 (8%)
Query: 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAAFLKIA-- 81
+ + IK+FVGQIPR+++EADL MF E+G++Y + VL+DK+TG KG AFL
Sbjct: 32 NAEAIKLFVGQIPRNLEEADLRPMFEEFGKIYELTVLKDKLTGMHKG----CAFLTYCTR 87
Query: 82 RAAIEPQKA 90
+AI Q A
Sbjct: 88 ESAINAQNA 96
>gi|26336154|dbj|BAC31762.1| unnamed protein product [Mus musculus]
Length = 252
Score = 65.9 bits (159), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 37/50 (74%)
Query: 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
D D IK+F+GQIPR++DE DL +F E+G++Y + VL+D+ TG KG F
Sbjct: 50 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAF 99
>gi|363737471|ref|XP_425051.3| PREDICTED: CUGBP Elav-like family member 3 [Gallus gallus]
Length = 445
Score = 65.9 bits (159), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 27/50 (54%), Positives = 38/50 (76%)
Query: 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
D D IK+FVGQIPR+++E+DL +F E+GR+Y + VL+D+ TG KG F
Sbjct: 3 DHDAIKLFVGQIPRNLEESDLKPLFEEFGRIYELTVLKDRFTGMHKGCAF 52
Score = 39.3 bits (90), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 27/45 (60%)
Query: 25 PDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSK 69
P+ +F+ +P+ +A+LT+MF +G V + V D+ T QSK
Sbjct: 357 PEGCNLFIYHLPQEFGDAELTQMFLPFGNVISAKVFVDRATNQSK 401
>gi|269785109|ref|NP_001161510.1| bruno-like protein [Saccoglossus kowalevskii]
gi|268053989|gb|ACY92481.1| bruno-like protein [Saccoglossus kowalevskii]
Length = 485
Score = 65.9 bits (159), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 28/50 (56%), Positives = 37/50 (74%)
Query: 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
D D IK+FVGQIPR+++E DL +F EYGR+Y + VL+D+ TG KG F
Sbjct: 32 DHDAIKLFVGQIPRNLEEKDLRPLFEEYGRIYELTVLKDRFTGMHKGCAF 81
Score = 36.6 bits (83), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 30/54 (55%)
Query: 16 SMSLPEQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSK 69
+M ++ P+ +F+ +P+ +A+L +MF +G V + V D+ T QSK
Sbjct: 388 TMPTQQREGPEGCNLFIYHLPQEFGDAELMQMFMPFGNVISSKVFVDRATNQSK 441
>gi|308465068|ref|XP_003094796.1| CRE-UNC-75 protein [Caenorhabditis remanei]
gi|308246879|gb|EFO90831.1| CRE-UNC-75 protein [Caenorhabditis remanei]
Length = 491
Score = 65.9 bits (159), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 37/50 (74%)
Query: 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
DPD IK+FVGQIPR+++E DL +F ++G++Y +L+DK TG KG F
Sbjct: 25 DPDAIKLFVGQIPRNLEEKDLRHLFEQFGKIYEFTILKDKYTGMHKGCAF 74
Score = 40.0 bits (92), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 27/45 (60%)
Query: 25 PDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSK 69
PD +F+ +P+ +A+L +MF+ +G V + V D+ T QSK
Sbjct: 403 PDGCNLFIYHLPQEFGDAELIQMFAPFGHVVSAKVFVDRATNQSK 447
>gi|449269404|gb|EMC80177.1| CUG-BP- and ETR-3-like factor 3, partial [Columba livia]
Length = 449
Score = 65.5 bits (158), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 27/50 (54%), Positives = 38/50 (76%)
Query: 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
D D IK+FVGQIPR+++E+DL +F E+GR+Y + VL+D+ TG KG F
Sbjct: 9 DHDAIKLFVGQIPRNLEESDLKPLFEEFGRIYELTVLKDRFTGMHKGCAF 58
Score = 39.3 bits (90), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 27/45 (60%)
Query: 25 PDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSK 69
P+ +F+ +P+ +A+LT+MF +G V + V D+ T QSK
Sbjct: 361 PEGCNLFIYHLPQEFGDAELTQMFLPFGNVISAKVFVDRATNQSK 405
>gi|62858167|ref|NP_001016491.1| CUG-BP- and ETR-3-like factor 3 [Xenopus (Silurana) tropicalis]
gi|89272955|emb|CAJ83148.1| trinucleotide repeat containing 4 [Xenopus (Silurana) tropicalis]
Length = 313
Score = 65.5 bits (158), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 38/50 (76%)
Query: 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
+PD IK+F+GQIPR++DE DL +F ++G++Y + V++DK TG KG F
Sbjct: 3 EPDAIKLFIGQIPRNLDEKDLKPIFEQFGKIYELTVIKDKFTGMHKGCAF 52
>gi|158253638|gb|AAI54064.1| tnrc4 protein [Xenopus (Silurana) tropicalis]
Length = 462
Score = 65.5 bits (158), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 38/50 (76%)
Query: 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
+PD IK+F+GQIPR++DE DL +F ++G++Y + V++DK TG KG F
Sbjct: 3 EPDAIKLFIGQIPRNLDEKDLKPIFEQFGKIYELTVIKDKFTGMHKGCAF 52
Score = 34.3 bits (77), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 26/45 (57%)
Query: 25 PDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSK 69
P+ +F+ +P+ ++++ +MF +G V + V D+ T QSK
Sbjct: 374 PEGCNIFIYHLPQEFTDSEILQMFLPFGNVISAKVFVDRATNQSK 418
>gi|167521936|ref|XP_001745306.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163776264|gb|EDQ89884.1| predicted protein [Monosiga brevicollis MX1]
Length = 389
Score = 65.5 bits (158), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 27/50 (54%), Positives = 37/50 (74%)
Query: 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
DPD +K+F+GQIPR+ E DLT +FSE+G +Y + +LRD+ T SKG F
Sbjct: 13 DPDAMKLFIGQIPRNYSEEDLTHIFSEFGHIYEVMILRDRQTHNSKGCAF 62
Score = 41.2 bits (95), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 32/55 (58%), Gaps = 5/55 (9%)
Query: 29 KMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAAFLKIARA 83
K+FVG + R+M+E DL F +G V ++ +LR G SKG AF+K + A
Sbjct: 106 KLFVGMLARTMNEDDLRAKFGAFGHVEDLTILR-HADGSSKG----CAFVKFSNA 155
Score = 37.7 bits (86), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 21 EQPD-PDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSK 69
+QP+ PD +F+ +P+ ++ L F +G V + V DK+TGQSK
Sbjct: 288 QQPEGPDGSNLFIYHLPQEFNDQALAATFLPFGNVISAKVFVDKMTGQSK 337
>gi|606976|gb|AAA81375.1| ribonucleoprotein [Xenopus laevis]
Length = 462
Score = 65.1 bits (157), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 38/50 (76%)
Query: 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
+PD IK+F+GQIPR++DE DL +F ++G++Y + V++DK TG KG F
Sbjct: 3 EPDAIKLFIGQIPRNLDEKDLKPIFEQFGKIYELTVIKDKFTGMHKGCAF 52
>gi|147907254|ref|NP_001079936.1| CUGBP Elav-like family member 3-A [Xenopus laevis]
gi|152013388|sp|Q91579.2|CEL3A_XENLA RecName: Full=CUGBP Elav-like family member 3-A; Short=CELF-3A;
AltName: Full=Bruno-like protein 1-A; AltName:
Full=CUG-BP- and ETR-3-like factor 3-A; AltName:
Full=ELAV-type RNA-binding protein 1-A; Short=ETR-1-A;
AltName: Full=RNA-binding protein BRUNOL-1-A; AltName:
Full=Trinucleotide repeat-containing gene 4 protein A
gi|34785486|gb|AAH57704.1| Etr-1 protein [Xenopus laevis]
gi|47937574|gb|AAH72134.1| Etr-1 protein [Xenopus laevis]
Length = 462
Score = 65.1 bits (157), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 38/50 (76%)
Query: 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
+PD IK+F+GQIPR++DE DL +F ++G++Y + V++DK TG KG F
Sbjct: 3 EPDAIKLFIGQIPRNLDEKDLKPIFEQFGKIYELTVIKDKFTGMHKGCAF 52
>gi|297275217|ref|XP_001082711.2| PREDICTED: CUGBP Elav-like family member 4-like [Macaca mulatta]
Length = 173
Score = 65.1 bits (157), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 37/50 (74%)
Query: 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
D D IK+F+GQIPR++DE DL +F E+G++Y + VL+D+ TG KG F
Sbjct: 50 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAF 99
>gi|296222553|ref|XP_002757248.1| PREDICTED: CUGBP Elav-like family member 4-like [Callithrix
jacchus]
Length = 151
Score = 65.1 bits (157), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 37/50 (74%)
Query: 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
D D IK+F+GQIPR++DE DL +F E+G++Y + VL+D+ TG KG F
Sbjct: 50 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAF 99
>gi|426253953|ref|XP_004020653.1| PREDICTED: CUGBP Elav-like family member 4 [Ovis aries]
Length = 513
Score = 65.1 bits (157), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 31/66 (46%), Positives = 45/66 (68%), Gaps = 7/66 (10%)
Query: 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF------EAAF 77
D D IK+F+GQIPR++DE DL +F E+G++Y + VL+D+ TG KG F ++AF
Sbjct: 46 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGFAFKTNCSTDSAF 105
Query: 78 LKIARA 83
K+ RA
Sbjct: 106 -KVGRA 110
Score = 35.0 bits (79), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 25/41 (60%)
Query: 29 KMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSK 69
+F+ +P+ + +A+L +MF +G V + V D+ T QSK
Sbjct: 429 NLFIYHLPQELGDAELMQMFLPFGNVISSKVFVDRATNQSK 469
>gi|310689911|pdb|3NNH|A Chain A, Crystal Structure Of The Cugbp1 Rrm1 With Guuguuuuguuu
Rna
gi|310689912|pdb|3NNH|C Chain C, Crystal Structure Of The Cugbp1 Rrm1 With Guuguuuuguuu
Rna
gi|310689914|pdb|3NNH|B Chain B, Crystal Structure Of The Cugbp1 Rrm1 With Guuguuuuguuu
Rna
gi|310689915|pdb|3NNH|D Chain D, Crystal Structure Of The Cugbp1 Rrm1 With Guuguuuuguuu
Rna
Length = 88
Score = 65.1 bits (157), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 34/67 (50%), Positives = 44/67 (65%), Gaps = 4/67 (5%)
Query: 26 DFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTG--QSKGKIFEAAFLKIARA 83
D IKMFVGQ+PR+ E DL ++F +YG VY INVLRD+ QSKG F + + +A
Sbjct: 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTR--KA 59
Query: 84 AIEPQKA 90
A+E Q A
Sbjct: 60 ALEAQNA 66
>gi|147905119|ref|NP_001080695.1| CUGBP Elav-like family member 3-B [Xenopus laevis]
gi|82241483|sp|Q7ZWM3.1|CEL3B_XENLA RecName: Full=CUGBP Elav-like family member 3-B; Short=CELF3-B;
AltName: Full=Bruno-like protein 1-B; AltName:
Full=CUG-BP- and ETR-3-like factor 3-B; AltName:
Full=ELAV-type RNA-binding protein 1-B; Short=ETR-1-B;
AltName: Full=RNA-binding protein BRUNOL-1-B; AltName:
Full=Trinucleotide repeat-containing gene 4 protein B
gi|28422663|gb|AAH46942.1| Tnrc4-prov protein [Xenopus laevis]
Length = 462
Score = 65.1 bits (157), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 38/50 (76%)
Query: 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
+PD IK+F+GQIPR++DE DL +F ++G++Y + V++DK TG KG F
Sbjct: 3 EPDAIKLFIGQIPRNLDEKDLKPIFEQFGKIYELTVIKDKFTGMHKGCAF 52
>gi|351711625|gb|EHB14544.1| CUG-BP- and ETR-3-like factor 4 [Heterocephalus glaber]
Length = 702
Score = 65.1 bits (157), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 37/50 (74%)
Query: 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
D D IK+F+GQIPR++DE DL +F E+G++Y + VL+D+ TG KG F
Sbjct: 215 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAF 264
Score = 36.2 bits (82), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 26/45 (57%)
Query: 25 PDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSK 69
P+ +F+ +P+ +A+L +MF +G V + V D+ T QSK
Sbjct: 583 PEGCNLFIYHLPQEFGDAELMQMFLPFGNVISSKVFVDRATSQSK 627
>gi|310689909|pdb|3NNC|A Chain A, Crystal Structure Of Cugbp1 Rrm12-Rna Complex
Length = 175
Score = 65.1 bits (157), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 34/67 (50%), Positives = 44/67 (65%), Gaps = 4/67 (5%)
Query: 26 DFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTG--QSKGKIFEAAFLKIARA 83
D IKMFVGQ+PR+ E DL ++F +YG VY INVLRD+ QSKG F + + +A
Sbjct: 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTR--KA 59
Query: 84 AIEPQKA 90
A+E Q A
Sbjct: 60 ALEAQNA 66
>gi|197359140|gb|ACH69786.1| RNA binding protein Bruno-like 5a [Xenopus laevis]
Length = 132
Score = 65.1 bits (157), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 38/84 (45%), Positives = 52/84 (61%), Gaps = 14/84 (16%)
Query: 17 MSLPEQP--------DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQS 68
MS PE P D D IK+FVGQIPR+++E DL +F ++G++Y + VL+D+ TG
Sbjct: 26 MSGPESPAQQSDSMKDLDAIKLFVGQIPRNLEEKDLKPLFEQFGKIYELTVLKDRYTGMH 85
Query: 69 KGKIFEAAFLK-IAR-AAIEPQKA 90
KG AFL AR +AI+ Q A
Sbjct: 86 KG----CAFLTYCARDSAIKAQTA 105
>gi|148664594|gb|EDK97010.1| bruno-like 4, RNA binding protein (Drosophila), isoform CRA_a
[Mus musculus]
Length = 485
Score = 65.1 bits (157), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 37/50 (74%)
Query: 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
D D IK+F+GQIPR++DE DL +F E+G++Y + VL+D+ TG KG F
Sbjct: 50 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAF 99
>gi|159164089|pdb|2DGP|A Chain A, Solution Structure Of The N-Terminal Rna Binding Domain
In Bruno-Like 4 Rna-Binding Protein
Length = 106
Score = 65.1 bits (157), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 37/50 (74%)
Query: 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
D D IK+F+GQIPR++DE DL +F E+G++Y + VL+D+ TG KG F
Sbjct: 10 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAF 59
>gi|62089134|dbj|BAD93011.1| bruno-like 4, RNA binding protein variant [Homo sapiens]
Length = 510
Score = 65.1 bits (157), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 37/50 (74%)
Query: 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
D D IK+F+GQIPR++DE DL +F E+G++Y + VL+D+ TG KG F
Sbjct: 75 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAF 124
>gi|207080190|ref|NP_001128833.1| CUGBP Elav-like family member 4 isoform 2 [Pongo abelii]
gi|55730138|emb|CAH91793.1| hypothetical protein [Pongo abelii]
Length = 456
Score = 65.1 bits (157), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 37/50 (74%)
Query: 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
D D IK+F+GQIPR++DE DL +F E+G++Y + VL+D+ TG KG F
Sbjct: 50 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAF 99
>gi|118404110|ref|NP_001072378.1| CUGBP Elav-like family member 4 [Xenopus (Silurana) tropicalis]
gi|123914769|sp|Q0V9L3.1|CELF4_XENTR RecName: Full=CUGBP Elav-like family member 4; Short=CELF-4;
AltName: Full=Bruno-like protein 4; AltName:
Full=CUG-BP- and ETR-3-like factor 4; AltName:
Full=RNA-binding protein BRUNOL-4
gi|111305714|gb|AAI21491.1| bruno-like 4, RNA binding protein [Xenopus (Silurana) tropicalis]
Length = 424
Score = 65.1 bits (157), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 37/50 (74%)
Query: 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
D D IK+F+GQIPR++DE DL +F E+G++Y + VL+D+ TG KG F
Sbjct: 43 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAF 92
>gi|33872777|gb|AAH04167.2| Bruno-like 4, RNA binding protein (Drosophila) [Homo sapiens]
gi|37515278|gb|AAH01946.2| Bruno-like 4, RNA binding protein (Drosophila) [Homo sapiens]
Length = 484
Score = 65.1 bits (157), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 37/50 (74%)
Query: 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
D D IK+F+GQIPR++DE DL +F E+G++Y + VL+D+ TG KG F
Sbjct: 50 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAF 99
>gi|301769063|ref|XP_002919950.1| PREDICTED: CUGBP Elav-like family member 4-like [Ailuropoda
melanoleuca]
Length = 463
Score = 64.7 bits (156), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 37/50 (74%)
Query: 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
D D IK+F+GQIPR++DE DL +F E+G++Y + VL+D+ TG KG F
Sbjct: 50 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAF 99
>gi|417400799|gb|JAA47323.1| Putative rna-binding protein cugbp1/bruno rrm superfamily
[Desmodus rotundus]
Length = 429
Score = 64.7 bits (156), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 37/50 (74%)
Query: 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
D D IK+F+GQIPR++DE DL +F E+G++Y + VL+D+ TG KG F
Sbjct: 50 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAF 99
>gi|291394300|ref|XP_002713553.1| PREDICTED: bruno-like 4, RNA binding protein-like [Oryctolagus
cuniculus]
Length = 485
Score = 64.7 bits (156), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 37/50 (74%)
Query: 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
D D IK+F+GQIPR++DE DL +F E+G++Y + VL+D+ TG KG F
Sbjct: 50 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAF 99
Score = 35.8 bits (81), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 18 SLPEQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
S P QP K+FVG + + E D+ ++F +G + +LR G SKG F
Sbjct: 142 SCPRQPPSQDRKLFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGP-DGNSKGCAF 196
>gi|152013394|sp|Q7TSY6.2|CELF4_MOUSE RecName: Full=CUGBP Elav-like family member 4; Short=CELF-4;
AltName: Full=Bruno-like protein 4; AltName:
Full=CUG-BP- and ETR-3-like factor 4; AltName:
Full=RNA-binding protein BRUNOL-4
Length = 486
Score = 64.7 bits (156), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 37/50 (74%)
Query: 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
D D IK+F+GQIPR++DE DL +F E+G++Y + VL+D+ TG KG F
Sbjct: 50 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAF 99
>gi|26339326|dbj|BAC33334.1| unnamed protein product [Mus musculus]
Length = 484
Score = 64.7 bits (156), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 37/50 (74%)
Query: 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
D D IK+F+GQIPR++DE DL +F E+G++Y + VL+D+ TG KG F
Sbjct: 50 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAF 99
>gi|13123778|ref|NP_064565.1| CUGBP Elav-like family member 4 isoform 1 [Homo sapiens]
gi|397520308|ref|XP_003830262.1| PREDICTED: CUGBP Elav-like family member 4 isoform 1 [Pan
paniscus]
gi|403265036|ref|XP_003924762.1| PREDICTED: CUGBP Elav-like family member 4 [Saimiri boliviensis
boliviensis]
gi|426385818|ref|XP_004059398.1| PREDICTED: CUGBP Elav-like family member 4 isoform 2 [Gorilla
gorilla gorilla]
gi|74761348|sp|Q9BZC1.1|CELF4_HUMAN RecName: Full=CUGBP Elav-like family member 4; Short=CELF-4;
AltName: Full=Bruno-like protein 4; AltName:
Full=CUG-BP- and ETR-3-like factor 4; AltName:
Full=RNA-binding protein BRUNOL-4
gi|152013395|sp|Q5NVC8.2|CELF4_PONAB RecName: Full=CUGBP Elav-like family member 4; Short=CELF-4;
AltName: Full=Bruno-like protein 4; AltName:
Full=CUG-BP- and ETR-3-like factor 4; AltName:
Full=RNA-binding protein BRUNOL-4
gi|12746394|gb|AAK07475.1|AF329265_1 CUG-BP and ETR-3 like factor 4 [Homo sapiens]
gi|119621802|gb|EAX01397.1| bruno-like 4, RNA binding protein (Drosophila), isoform CRA_d
[Homo sapiens]
Length = 486
Score = 64.7 bits (156), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 37/50 (74%)
Query: 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
D D IK+F+GQIPR++DE DL +F E+G++Y + VL+D+ TG KG F
Sbjct: 50 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAF 99
>gi|344269050|ref|XP_003406368.1| PREDICTED: CUGBP Elav-like family member 4-like isoform 2
[Loxodonta africana]
Length = 486
Score = 64.7 bits (156), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 37/50 (74%)
Query: 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
D D IK+F+GQIPR++DE DL +F E+G++Y + VL+D+ TG KG F
Sbjct: 50 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAF 99
>gi|148664595|gb|EDK97011.1| bruno-like 4, RNA binding protein (Drosophila), isoform CRA_b [Mus
musculus]
Length = 463
Score = 64.7 bits (156), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 37/50 (74%)
Query: 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
D D IK+F+GQIPR++DE DL +F E+G++Y + VL+D+ TG KG F
Sbjct: 56 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAF 105
>gi|56403901|emb|CAI29735.1| hypothetical protein [Pongo abelii]
Length = 486
Score = 64.7 bits (156), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 37/50 (74%)
Query: 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
D D IK+F+GQIPR++DE DL +F E+G++Y + VL+D+ TG KG F
Sbjct: 50 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAF 99
>gi|395822986|ref|XP_003784782.1| PREDICTED: CUGBP Elav-like family member 4 isoform 1 [Otolemur
garnettii]
Length = 486
Score = 64.7 bits (156), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 37/50 (74%)
Query: 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
D D IK+F+GQIPR++DE DL +F E+G++Y + VL+D+ TG KG F
Sbjct: 50 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAF 99
>gi|226371657|ref|NP_573458.2| CUGBP Elav-like family member 4 isoform D [Mus musculus]
Length = 484
Score = 64.7 bits (156), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 37/50 (74%)
Query: 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
D D IK+F+GQIPR++DE DL +F E+G++Y + VL+D+ TG KG F
Sbjct: 50 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAF 99
>gi|226371659|ref|NP_001139764.1| CUGBP Elav-like family member 4 isoform A [Mus musculus]
gi|29387384|gb|AAH48405.1| Brunol4 protein [Mus musculus]
Length = 504
Score = 64.7 bits (156), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 37/50 (74%)
Query: 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
D D IK+F+GQIPR++DE DL +F E+G++Y + VL+D+ TG KG F
Sbjct: 50 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAF 99
>gi|148664596|gb|EDK97012.1| bruno-like 4, RNA binding protein (Drosophila), isoform CRA_c [Mus
musculus]
Length = 510
Score = 64.7 bits (156), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 37/50 (74%)
Query: 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
D D IK+F+GQIPR++DE DL +F E+G++Y + VL+D+ TG KG F
Sbjct: 56 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAF 105
>gi|226371661|ref|NP_001139765.1| CUGBP Elav-like family member 4 isoform B [Mus musculus]
gi|30931371|gb|AAH52744.1| Bruno-like 4, RNA binding protein (Drosophila) [Mus musculus]
Length = 485
Score = 64.7 bits (156), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 37/50 (74%)
Query: 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
D D IK+F+GQIPR++DE DL +F E+G++Y + VL+D+ TG KG F
Sbjct: 50 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAF 99
>gi|291327533|ref|NP_001167545.1| CUGBP Elav-like family member 4 isoform F [Mus musculus]
gi|26341974|dbj|BAC34649.1| unnamed protein product [Mus musculus]
Length = 456
Score = 64.7 bits (156), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 37/50 (74%)
Query: 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
D D IK+F+GQIPR++DE DL +F E+G++Y + VL+D+ TG KG F
Sbjct: 50 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAF 99
>gi|390338613|ref|XP_003724811.1| PREDICTED: CUGBP Elav-like family member 3-A-like isoform 1
[Strongylocentrotus purpuratus]
Length = 469
Score = 64.7 bits (156), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 34/69 (49%), Positives = 45/69 (65%), Gaps = 6/69 (8%)
Query: 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAAFLKIA-- 81
D D IK+FVGQIPR+++E DL +F ++GR+Y + VLRD+ TG KG AFL
Sbjct: 44 DHDAIKLFVGQIPRNLEEKDLRPIFEDFGRIYELTVLRDRFTGVHKG----CAFLTYCDR 99
Query: 82 RAAIEPQKA 90
+AI QKA
Sbjct: 100 ESAIRAQKA 108
Score = 43.1 bits (100), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 32/50 (64%)
Query: 20 PEQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSK 69
P++ P+ +F+ +P+ +A+LT+MF +G+V + V D+VT QSK
Sbjct: 376 PQREGPEGCNLFIYHLPQEFGDAELTQMFVPFGQVISSKVFVDRVTNQSK 425
>gi|118103587|ref|XP_001231325.1| PREDICTED: CUGBP, Elav-like family member 4 isoform 2 [Gallus
gallus]
Length = 483
Score = 64.7 bits (156), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 37/50 (74%)
Query: 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
D D IK+F+GQIPR++DE DL +F E+G++Y + VL+D+ TG KG F
Sbjct: 48 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAF 97
>gi|197097518|ref|NP_001127577.1| CUGBP Elav-like family member 4 isoform 1 [Pongo abelii]
gi|55732010|emb|CAH92712.1| hypothetical protein [Pongo abelii]
Length = 457
Score = 64.7 bits (156), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 37/50 (74%)
Query: 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
D D IK+F+GQIPR++DE DL +F E+G++Y + VL+D+ TG KG F
Sbjct: 50 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAF 99
>gi|9246977|gb|AAF86232.1|AF248650_1 RNA-binding protein BRUNOL4 [Homo sapiens]
Length = 294
Score = 64.7 bits (156), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 37/50 (74%)
Query: 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
D D IK+F+GQIPR++DE DL +F E+G++Y + VL+D+ TG KG F
Sbjct: 50 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAF 99
>gi|390338611|ref|XP_781047.3| PREDICTED: CUGBP Elav-like family member 3-A-like isoform 2
[Strongylocentrotus purpuratus]
Length = 520
Score = 64.7 bits (156), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 34/69 (49%), Positives = 45/69 (65%), Gaps = 6/69 (8%)
Query: 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAAFLKIA-- 81
D D IK+FVGQIPR+++E DL +F ++GR+Y + VLRD+ TG KG AFL
Sbjct: 44 DHDAIKLFVGQIPRNLEEKDLRPIFEDFGRIYELTVLRDRFTGVHKG----CAFLTYCDR 99
Query: 82 RAAIEPQKA 90
+AI QKA
Sbjct: 100 ESAIRAQKA 108
Score = 40.8 bits (94), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 29/45 (64%)
Query: 25 PDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSK 69
P+ +F+ +P+ +A+LT+MF +G+V + V D+VT QSK
Sbjct: 432 PEGCNLFIYHLPQEFGDAELTQMFVPFGQVISSKVFVDRVTNQSK 476
>gi|363744106|ref|XP_003642975.1| PREDICTED: CUGBP, Elav-like family member 4 [Gallus gallus]
Length = 445
Score = 64.7 bits (156), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 37/50 (74%)
Query: 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
D D IK+F+GQIPR++DE DL +F E+G++Y + VL+D+ TG KG F
Sbjct: 48 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAF 97
>gi|187761301|ref|NP_001020259.1| CUGBP Elav-like family member 4 isoform 3 [Homo sapiens]
Length = 484
Score = 64.7 bits (156), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 37/50 (74%)
Query: 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
D D IK+F+GQIPR++DE DL +F E+G++Y + VL+D+ TG KG F
Sbjct: 50 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAF 99
>gi|387542962|gb|AFJ72108.1| CUGBP Elav-like family member 4 isoform 1 [Macaca mulatta]
Length = 486
Score = 64.7 bits (156), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 37/50 (74%)
Query: 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
D D IK+F+GQIPR++DE DL +F E+G++Y + VL+D+ TG KG F
Sbjct: 50 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAF 99
>gi|363744101|ref|XP_003642973.1| PREDICTED: CUGBP, Elav-like family member 4 [Gallus gallus]
Length = 472
Score = 64.7 bits (156), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 37/50 (74%)
Query: 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
D D IK+F+GQIPR++DE DL +F E+G++Y + VL+D+ TG KG F
Sbjct: 48 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAF 97
>gi|332849799|ref|XP_512100.3| PREDICTED: CUGBP, Elav-like family member 4 [Pan troglodytes]
gi|194379036|dbj|BAG58069.1| unnamed protein product [Homo sapiens]
Length = 454
Score = 64.7 bits (156), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 37/50 (74%)
Query: 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
D D IK+F+GQIPR++DE DL +F E+G++Y + VL+D+ TG KG F
Sbjct: 50 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAF 99
Score = 36.2 bits (82), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 26/45 (57%)
Query: 25 PDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSK 69
P+ +F+ +P+ +A+L +MF +G V + V D+ T QSK
Sbjct: 406 PEGCNLFIYHLPQEFGDAELMQMFLPFGNVISSKVFVDRATNQSK 450
>gi|148664597|gb|EDK97013.1| bruno-like 4, RNA binding protein (Drosophila), isoform CRA_d [Mus
musculus]
Length = 491
Score = 64.7 bits (156), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 37/50 (74%)
Query: 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
D D IK+F+GQIPR++DE DL +F E+G++Y + VL+D+ TG KG F
Sbjct: 56 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAF 105
>gi|440911412|gb|ELR61086.1| CUGBP Elav-like family member 4 [Bos grunniens mutus]
Length = 487
Score = 64.7 bits (156), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 37/50 (74%)
Query: 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
D D IK+F+GQIPR++DE DL +F E+G++Y + VL+D+ TG KG F
Sbjct: 50 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAF 99
>gi|207028397|ref|NP_001128708.1| CUGBP, Elav-like family member 4 [Xenopus laevis]
gi|197359136|gb|ACH69784.1| RNA binding protein Bruno-like 4 [Xenopus laevis]
Length = 471
Score = 64.7 bits (156), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 37/50 (74%)
Query: 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
D D IK+F+GQIPR++DE DL +F E+G++Y + VL+D+ TG KG F
Sbjct: 48 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAF 97
>gi|187761299|ref|NP_001020258.1| CUGBP Elav-like family member 4 isoform 2 [Homo sapiens]
Length = 485
Score = 64.7 bits (156), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 37/50 (74%)
Query: 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
D D IK+F+GQIPR++DE DL +F E+G++Y + VL+D+ TG KG F
Sbjct: 50 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAF 99
>gi|387542960|gb|AFJ72107.1| CUGBP Elav-like family member 4 isoform 4 [Macaca mulatta]
Length = 447
Score = 64.7 bits (156), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 37/50 (74%)
Query: 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
D D IK+F+GQIPR++DE DL +F E+G++Y + VL+D+ TG KG F
Sbjct: 50 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAF 99
>gi|326674562|ref|XP_002664812.2| PREDICTED: CUGBP Elav-like family member 3-like [Danio rerio]
Length = 442
Score = 64.7 bits (156), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 38/50 (76%)
Query: 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
+PD IK+F+GQIPR+++E DL +F +YG++Y + V++DK TG KG F
Sbjct: 3 EPDAIKLFIGQIPRNLEEKDLKPIFEQYGKIYELTVIKDKYTGMHKGCAF 52
>gi|75075903|sp|Q4R535.1|CELF4_MACFA RecName: Full=CUGBP Elav-like family member 4; Short=CELF-4;
AltName: Full=Bruno-like protein 4; AltName:
Full=CUG-BP- and ETR-3-like factor 4; AltName:
Full=RNA-binding protein BRUNOL-4
gi|67970896|dbj|BAE01790.1| unnamed protein product [Macaca fascicularis]
Length = 474
Score = 64.7 bits (156), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 37/50 (74%)
Query: 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
D D IK+F+GQIPR++DE DL +F E+G++Y + VL+D+ TG KG F
Sbjct: 50 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAF 99
>gi|187761303|ref|NP_001020260.1| CUGBP Elav-like family member 4 isoform 4 [Homo sapiens]
gi|397520310|ref|XP_003830263.1| PREDICTED: CUGBP Elav-like family member 4 isoform 2 [Pan
paniscus]
gi|426385816|ref|XP_004059397.1| PREDICTED: CUGBP Elav-like family member 4 isoform 1 [Gorilla
gorilla gorilla]
gi|28279033|gb|AAH45711.1| BRUNOL4 protein [Homo sapiens]
Length = 448
Score = 64.7 bits (156), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 37/50 (74%)
Query: 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
D D IK+F+GQIPR++DE DL +F E+G++Y + VL+D+ TG KG F
Sbjct: 50 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAF 99
>gi|395822988|ref|XP_003784783.1| PREDICTED: CUGBP Elav-like family member 4 isoform 2 [Otolemur
garnettii]
Length = 448
Score = 64.7 bits (156), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 37/50 (74%)
Query: 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
D D IK+F+GQIPR++DE DL +F E+G++Y + VL+D+ TG KG F
Sbjct: 50 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAF 99
>gi|363744108|ref|XP_003642976.1| PREDICTED: CUGBP, Elav-like family member 4 [Gallus gallus]
Length = 454
Score = 64.7 bits (156), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 37/50 (74%)
Query: 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
D D IK+F+GQIPR++DE DL +F E+G++Y + VL+D+ TG KG F
Sbjct: 48 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAF 97
Score = 35.8 bits (81), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 26/45 (57%)
Query: 25 PDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSK 69
P+ +F+ +P+ +A+L +MF +G V + V D+ T QSK
Sbjct: 366 PEGCNLFIYHLPQEFGDAELMQMFLPFGNVISSKVFVDRATNQSK 410
>gi|350586085|ref|XP_003127952.3| PREDICTED: CUGBP, Elav-like family member 4 [Sus scrofa]
Length = 448
Score = 64.7 bits (156), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 37/50 (74%)
Query: 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
D D IK+F+GQIPR++DE DL +F E+G++Y + VL+D+ TG KG F
Sbjct: 50 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAF 99
>gi|344269052|ref|XP_003406369.1| PREDICTED: CUGBP Elav-like family member 4-like isoform 3
[Loxodonta africana]
Length = 448
Score = 64.7 bits (156), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 37/50 (74%)
Query: 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
D D IK+F+GQIPR++DE DL +F E+G++Y + VL+D+ TG KG F
Sbjct: 50 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAF 99
>gi|449514107|ref|XP_002187309.2| PREDICTED: CUGBP, Elav-like family member 4 isoform 1
[Taeniopygia guttata]
Length = 492
Score = 64.7 bits (156), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 37/50 (74%)
Query: 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
D D IK+F+GQIPR++DE DL +F E+G++Y + VL+D+ TG KG F
Sbjct: 48 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAF 97
Score = 36.2 bits (82), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 26/45 (57%)
Query: 25 PDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSK 69
P+ +F+ +P+ +A+L +MF +G V + V D+ T QSK
Sbjct: 404 PEGCNLFIYHLPQEFGDAELMQMFLPFGNVISSKVFVDRATNQSK 448
>gi|363744104|ref|XP_003642974.1| PREDICTED: CUGBP, Elav-like family member 4 [Gallus gallus]
Length = 491
Score = 64.7 bits (156), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 37/50 (74%)
Query: 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
D D IK+F+GQIPR++DE DL +F E+G++Y + VL+D+ TG KG F
Sbjct: 48 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAF 97
Score = 36.2 bits (82), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 26/45 (57%)
Query: 25 PDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSK 69
P+ +F+ +P+ +A+L +MF +G V + V D+ T QSK
Sbjct: 403 PEGCNLFIYHLPQEFGDAELMQMFLPFGNVISSKVFVDRATNQSK 447
>gi|148664598|gb|EDK97014.1| bruno-like 4, RNA binding protein (Drosophila), isoform CRA_e [Mus
musculus]
Length = 501
Score = 64.7 bits (156), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 37/50 (74%)
Query: 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
D D IK+F+GQIPR++DE DL +F E+G++Y + VL+D+ TG KG F
Sbjct: 56 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAF 105
>gi|226371663|ref|NP_001139766.1| CUGBP Elav-like family member 4 isoform C [Mus musculus]
gi|27753638|gb|AAO22167.1| bruno-like 4 protein [Mus musculus]
Length = 495
Score = 64.7 bits (156), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 37/50 (74%)
Query: 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
D D IK+F+GQIPR++DE DL +F E+G++Y + VL+D+ TG KG F
Sbjct: 50 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAF 99
>gi|395510718|ref|XP_003759619.1| PREDICTED: CUGBP Elav-like family member 4-like [Sarcophilus
harrisii]
Length = 453
Score = 64.7 bits (156), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 37/50 (74%)
Query: 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
D D IK+F+GQIPR++DE DL +F E+G++Y + VL+D+ TG KG F
Sbjct: 49 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAF 98
Score = 36.2 bits (82), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 26/45 (57%)
Query: 25 PDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSK 69
P+ +F+ +P+ +A+L +MF +G V + V D+ T QSK
Sbjct: 405 PEGCNLFIYHLPQEFGDAELMQMFLPFGNVISSKVFVDRATNQSK 449
>gi|363744110|ref|XP_003642977.1| PREDICTED: CUGBP, Elav-like family member 4 [Gallus gallus]
Length = 465
Score = 64.7 bits (156), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 37/50 (74%)
Query: 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
D D IK+F+GQIPR++DE DL +F E+G++Y + VL+D+ TG KG F
Sbjct: 48 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAF 97
Score = 36.2 bits (82), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 26/45 (57%)
Query: 25 PDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSK 69
P+ +F+ +P+ +A+L +MF +G V + V D+ T QSK
Sbjct: 377 PEGCNLFIYHLPQEFGDAELMQMFLPFGNVISSKVFVDRATNQSK 421
>gi|149944693|ref|NP_001092538.1| CUGBP Elav-like family member 4 [Bos taurus]
gi|148878073|gb|AAI46143.1| BRUNOL4 protein [Bos taurus]
gi|296473867|tpg|DAA15982.1| TPA: CUG-BP- and ETR-3-like factor 4 [Bos taurus]
Length = 475
Score = 64.7 bits (156), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 37/50 (74%)
Query: 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
D D IK+F+GQIPR++DE DL +F E+G++Y + VL+D+ TG KG F
Sbjct: 50 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAF 99
>gi|118103583|ref|XP_424495.2| PREDICTED: CUGBP, Elav-like family member 4 isoform 3 [Gallus
gallus]
Length = 492
Score = 64.7 bits (156), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 37/50 (74%)
Query: 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
D D IK+F+GQIPR++DE DL +F E+G++Y + VL+D+ TG KG F
Sbjct: 48 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAF 97
Score = 36.2 bits (82), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 26/45 (57%)
Query: 25 PDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSK 69
P+ +F+ +P+ +A+L +MF +G V + V D+ T QSK
Sbjct: 404 PEGCNLFIYHLPQEFGDAELMQMFLPFGNVISSKVFVDRATNQSK 448
>gi|50540190|ref|NP_001002562.1| CUGBP Elav-like family member 4 [Danio rerio]
gi|82235921|sp|Q6DGV1.1|CELF4_DANRE RecName: Full=CUGBP Elav-like family member 4; Short=CELF-4;
AltName: Full=Bruno-like protein 4; AltName:
Full=CUG-BP- and ETR-3-like factor 4; AltName:
Full=RNA-binding protein BRUNOL-4
gi|49904554|gb|AAH76238.1| Zgc:92761 [Danio rerio]
Length = 520
Score = 64.7 bits (156), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 43/64 (67%), Gaps = 1/64 (1%)
Query: 10 TYEYVRSMSLPEQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSK 69
T+ ++P + D D IK+F+GQIPR++DE DL +F E+G++Y + VL+D+ TG K
Sbjct: 30 THSPASCATIPMK-DHDAIKLFIGQIPRNLDEKDLRPLFEEFGKIYELTVLKDRFTGMHK 88
Query: 70 GKIF 73
G F
Sbjct: 89 GCAF 92
Score = 35.0 bits (79), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 25/45 (55%)
Query: 25 PDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSK 69
P+ +F+ +P+ + +L +MF +G V + V D+ T QSK
Sbjct: 432 PEGCNLFIYHLPQEFGDGELMQMFLPFGNVISSKVFVDRATNQSK 476
>gi|395501660|ref|XP_003755209.1| PREDICTED: CUGBP Elav-like family member 4-like [Sarcophilus
harrisii]
Length = 399
Score = 64.7 bits (156), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 27/50 (54%), Positives = 37/50 (74%)
Query: 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
D D IK+FVGQIPR++DE DL +F E+G++Y + VL+D+ TG KG F
Sbjct: 18 DHDAIKLFVGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGVHKGCAF 67
Score = 36.2 bits (82), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 26/45 (57%)
Query: 25 PDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSK 69
P+ +F+ +P+ +A+L +MF +G V + V D+ T QSK
Sbjct: 311 PEGCNLFIYHLPQEFGDAELMQMFLPFGTVISAKVFVDRATNQSK 355
>gi|344269048|ref|XP_003406367.1| PREDICTED: CUGBP Elav-like family member 4-like isoform 1
[Loxodonta africana]
Length = 447
Score = 64.7 bits (156), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 37/50 (74%)
Query: 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
D D IK+F+GQIPR++DE DL +F E+G++Y + VL+D+ TG KG F
Sbjct: 3 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAF 52
Score = 36.2 bits (82), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 26/45 (57%)
Query: 25 PDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSK 69
P+ +F+ +P+ +A+L +MF +G V + V D+ T QSK
Sbjct: 359 PEGCNLFIYHLPQEFGDAELMQMFLPFGNVISSKVFVDRATNQSK 403
>gi|118103585|ref|XP_001231286.1| PREDICTED: CUGBP, Elav-like family member 4 isoform 1 [Gallus
gallus]
Length = 504
Score = 64.7 bits (156), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 37/50 (74%)
Query: 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
D D IK+F+GQIPR++DE DL +F E+G++Y + VL+D+ TG KG F
Sbjct: 48 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAF 97
Score = 36.2 bits (82), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 26/45 (57%)
Query: 25 PDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSK 69
P+ +F+ +P+ +A+L +MF +G V + V D+ T QSK
Sbjct: 416 PEGCNLFIYHLPQEFGDAELMQMFLPFGNVISSKVFVDRATNQSK 460
>gi|226371665|ref|NP_001139767.1| CUGBP Elav-like family member 4 isoform E [Mus musculus]
Length = 163
Score = 64.7 bits (156), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 37/50 (74%)
Query: 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
D D IK+F+GQIPR++DE DL +F E+G++Y + VL+D+ TG KG F
Sbjct: 50 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAF 99
>gi|348576693|ref|XP_003474121.1| PREDICTED: CUGBP Elav-like family member 4-like [Cavia porcellus]
Length = 477
Score = 64.7 bits (156), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 37/50 (74%)
Query: 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
D D IK+F+GQIPR++DE DL +F E+G++Y + VL+D+ TG KG F
Sbjct: 50 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAF 99
>gi|441603563|ref|XP_003262134.2| PREDICTED: LOW QUALITY PROTEIN: CUGBP Elav-like family member 4
[Nomascus leucogenys]
Length = 458
Score = 64.3 bits (155), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 37/50 (74%)
Query: 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
D D IK+F+GQIPR++DE DL +F E+G++Y + VL+D+ TG KG F
Sbjct: 50 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCSF 99
Score = 36.2 bits (82), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 26/45 (57%)
Query: 25 PDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSK 69
P+ +F+ +P+ +A+L +MF +G V + V D+ T QSK
Sbjct: 410 PEGCNLFIYHLPQEFGDAELMQMFLPFGNVISSKVFVDRATNQSK 454
>gi|432858764|ref|XP_004068927.1| PREDICTED: CUGBP Elav-like family member 4-like [Oryzias latipes]
Length = 505
Score = 64.3 bits (155), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 37/50 (74%)
Query: 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
D D IK+F+GQIPR++DE DL +F E+G++Y + VL+D+ TG KG F
Sbjct: 47 DHDAIKLFIGQIPRNLDEKDLRPLFEEFGKIYELTVLKDRFTGMHKGCAF 96
>gi|410920283|ref|XP_003973613.1| PREDICTED: CUGBP Elav-like family member 4-like [Takifugu
rubripes]
Length = 530
Score = 64.3 bits (155), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 37/50 (74%)
Query: 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
D D IK+F+GQIPR++DE DL +F E+G++Y + VL+D+ TG KG F
Sbjct: 47 DHDAIKLFIGQIPRNLDEKDLRPLFEEFGKIYELTVLKDRFTGMHKGCAF 96
Score = 35.0 bits (79), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 25/45 (55%)
Query: 25 PDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSK 69
P+ +F+ +P+ + +L +MF +G V + V D+ T QSK
Sbjct: 442 PEGCNLFIYHLPQEFGDGELMQMFLPFGNVISSKVFVDRATNQSK 486
>gi|145306688|gb|ABP57108.1| CUG-BP and ETR-3-like factor 6 [Gallus gallus]
Length = 445
Score = 64.3 bits (155), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 26/48 (54%), Positives = 37/48 (77%)
Query: 26 DFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
D IK+FVGQIPR+++E+DL +F E+GR+Y + VL+D+ TG KG F
Sbjct: 5 DAIKLFVGQIPRNLEESDLKPLFEEFGRIYELTVLKDRFTGMHKGCAF 52
Score = 39.3 bits (90), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 27/45 (60%)
Query: 25 PDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSK 69
P+ +F+ +P+ +A+LT+MF +G V + V D+ T QSK
Sbjct: 357 PEGCNLFIYHLPQEFGDAELTQMFLPFGNVISAKVFVDRATNQSK 401
>gi|334314036|ref|XP_003339980.1| PREDICTED: CUGBP Elav-like family member 6 isoform 2 [Monodelphis
domestica]
Length = 464
Score = 64.3 bits (155), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 27/50 (54%), Positives = 37/50 (74%)
Query: 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
D D IK+FVGQIPR++DE DL +F E+G++Y + VL+D+ TG KG F
Sbjct: 49 DHDAIKLFVGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGVHKGCAF 98
Score = 36.2 bits (82), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 26/45 (57%)
Query: 25 PDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSK 69
P+ +F+ +P+ +A+L +MF +G V + V D+ T QSK
Sbjct: 376 PEGCNLFIYHLPQEFGDAELMQMFLPFGTVISAKVFVDRATNQSK 420
>gi|126272943|ref|XP_001371226.1| PREDICTED: CUGBP Elav-like family member 6 isoform 1 [Monodelphis
domestica]
Length = 491
Score = 64.3 bits (155), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 27/50 (54%), Positives = 37/50 (74%)
Query: 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
D D IK+FVGQIPR++DE DL +F E+G++Y + VL+D+ TG KG F
Sbjct: 49 DHDAIKLFVGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGVHKGCAF 98
Score = 36.2 bits (82), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 26/45 (57%)
Query: 25 PDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSK 69
P+ +F+ +P+ +A+L +MF +G V + V D+ T QSK
Sbjct: 403 PEGCNLFIYHLPQEFGDAELMQMFLPFGTVISAKVFVDRATNQSK 447
>gi|348508140|ref|XP_003441613.1| PREDICTED: CUGBP Elav-like family member 4-like [Oreochromis
niloticus]
Length = 524
Score = 64.3 bits (155), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 37/50 (74%)
Query: 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
D D IK+F+GQIPR++DE DL +F E+G++Y + VL+D+ TG KG F
Sbjct: 47 DHDAIKLFIGQIPRNLDEKDLRPLFEEFGKIYELTVLKDRFTGMHKGCAF 96
Score = 35.0 bits (79), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 25/45 (55%)
Query: 25 PDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSK 69
P+ +F+ +P+ + +L +MF +G V + V D+ T QSK
Sbjct: 436 PEGCNLFIYHLPQEFGDGELMQMFLPFGNVISSKVFVDRATNQSK 480
>gi|426379619|ref|XP_004056489.1| PREDICTED: CUGBP Elav-like family member 6 isoform 2 [Gorilla
gorilla gorilla]
Length = 454
Score = 64.3 bits (155), Expect = 9e-09, Method: Composition-based stats.
Identities = 28/50 (56%), Positives = 37/50 (74%)
Query: 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
D D IK+FVGQIPR +DE DL +F E+GR+Y + VL+D++TG KG F
Sbjct: 42 DHDAIKLFVGQIPRGLDEQDLKPLFEEFGRIYELTVLKDRLTGLHKGCAF 91
>gi|397495532|ref|XP_003818606.1| PREDICTED: CUGBP Elav-like family member 6 isoform 2 [Pan
paniscus]
Length = 454
Score = 64.3 bits (155), Expect = 9e-09, Method: Composition-based stats.
Identities = 28/50 (56%), Positives = 37/50 (74%)
Query: 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
D D IK+FVGQIPR +DE DL +F E+GR+Y + VL+D++TG KG F
Sbjct: 42 DHDAIKLFVGQIPRGLDEQDLKPLFEEFGRIYELTVLKDRLTGLHKGCAF 91
>gi|395822451|ref|XP_003784531.1| PREDICTED: CUGBP Elav-like family member 6 isoform 2 [Otolemur
garnettii]
Length = 454
Score = 64.3 bits (155), Expect = 9e-09, Method: Composition-based stats.
Identities = 28/50 (56%), Positives = 37/50 (74%)
Query: 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
D D IK+FVGQIPR +DE DL +F E+GR+Y + VL+D++TG KG F
Sbjct: 42 DHDAIKLFVGQIPRGLDEQDLKPLFEEFGRIYELTVLKDRLTGLHKGCAF 91
>gi|332236064|ref|XP_003267225.1| PREDICTED: CUGBP Elav-like family member 6 isoform 2 [Nomascus
leucogenys]
Length = 454
Score = 64.3 bits (155), Expect = 9e-09, Method: Composition-based stats.
Identities = 28/50 (56%), Positives = 37/50 (74%)
Query: 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
D D IK+FVGQIPR +DE DL +F E+GR+Y + VL+D++TG KG F
Sbjct: 42 DHDAIKLFVGQIPRGLDEQDLKPLFEEFGRIYELTVLKDRLTGLHKGCAF 91
>gi|289547741|ref|NP_001166155.1| CUGBP Elav-like family member 6 isoform 2 [Homo sapiens]
gi|194381648|dbj|BAG58778.1| unnamed protein product [Homo sapiens]
Length = 454
Score = 64.3 bits (155), Expect = 9e-09, Method: Composition-based stats.
Identities = 28/50 (56%), Positives = 37/50 (74%)
Query: 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
D D IK+FVGQIPR +DE DL +F E+GR+Y + VL+D++TG KG F
Sbjct: 42 DHDAIKLFVGQIPRGLDEQDLKPLFEEFGRIYELTVLKDRLTGLHKGCAF 91
>gi|402874765|ref|XP_003901198.1| PREDICTED: CUGBP Elav-like family member 6 isoform 2 [Papio
anubis]
Length = 454
Score = 64.3 bits (155), Expect = 1e-08, Method: Composition-based stats.
Identities = 28/50 (56%), Positives = 37/50 (74%)
Query: 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
D D IK+FVGQIPR +DE DL +F E+GR+Y + VL+D++TG KG F
Sbjct: 42 DHDAIKLFVGQIPRGLDEQDLKPLFEEFGRIYELTVLKDRLTGLHKGCAF 91
>gi|47212895|emb|CAF96453.1| unnamed protein product [Tetraodon nigroviridis]
Length = 89
Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 38/50 (76%)
Query: 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
D D IK+F+GQIPR+++E DL +F E+G++Y + VL+D+ TG KG +F
Sbjct: 39 DHDAIKLFIGQIPRNLEEKDLKPLFEEFGKIYELTVLKDRFTGMHKGWLF 88
>gi|335292432|ref|XP_003356730.1| PREDICTED: CUGBP, Elav-like family member 6 isoform 3 [Sus
scrofa]
Length = 453
Score = 63.9 bits (154), Expect = 1e-08, Method: Composition-based stats.
Identities = 28/50 (56%), Positives = 37/50 (74%)
Query: 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
D D IK+FVGQIPR +DE DL +F E+GR+Y + VL+D++TG KG F
Sbjct: 42 DHDAIKLFVGQIPRGLDEQDLKPLFEEFGRIYELTVLKDRLTGLHKGCAF 91
>gi|212286102|ref|NP_001131056.1| CUGBP, Elav-like family member 5 [Xenopus laevis]
gi|197359138|gb|ACH69785.1| RNA binding protein Bruno-like 5 [Xenopus laevis]
Length = 484
Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/65 (46%), Positives = 42/65 (64%), Gaps = 8/65 (12%)
Query: 17 MSLPEQP--------DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQS 68
MS PE P D D IK+FVGQIPR+++E DL +F ++G++Y + VL+D+ TG
Sbjct: 27 MSGPESPAQQSDSMKDLDAIKLFVGQIPRNLEEKDLKPLFEQFGKIYELTVLKDRYTGMH 86
Query: 69 KGKIF 73
KG F
Sbjct: 87 KGCAF 91
Score = 36.6 bits (83), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 26/45 (57%)
Query: 25 PDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSK 69
P+ +F+ +P+ + +LT+MF +G + + V D+ T QSK
Sbjct: 396 PEGCNLFIYHLPQEFGDNELTQMFLPFGNIISSKVFMDRATNQSK 440
Score = 35.8 bits (81), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 34/63 (53%), Gaps = 10/63 (15%)
Query: 29 KMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAAFLKI-----ARA 83
K+FVG + + E ++T MF +G + +VLR G SKG AF+K A+A
Sbjct: 135 KLFVGMLSKQQSEEEVTSMFQAFGSIEECSVLRGP-DGSSKG----CAFVKFSSHAEAQA 189
Query: 84 AIE 86
AI+
Sbjct: 190 AIQ 192
>gi|34328409|ref|NP_780444.2| CUGBP Elav-like family member 6 [Mus musculus]
gi|81912009|sp|Q7TN33.1|CELF6_MOUSE RecName: Full=CUGBP Elav-like family member 6; Short=CELF-6;
AltName: Full=Bruno-like protein 6; AltName:
Full=CUG-BP- and ETR-3-like factor 6; AltName:
Full=RNA-binding protein BRUNOL-6
gi|30851561|gb|AAH52406.1| Bruno-like 6, RNA binding protein (Drosophila) [Mus musculus]
Length = 460
Score = 63.9 bits (154), Expect = 1e-08, Method: Composition-based stats.
Identities = 28/50 (56%), Positives = 37/50 (74%)
Query: 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
D D IK+FVGQIPR +DE DL +F E+GR+Y + VL+D++TG KG F
Sbjct: 42 DHDAIKLFVGQIPRGLDEQDLKPLFEEFGRIYELTVLKDRLTGLHKGCAF 91
>gi|47219454|emb|CAG10818.1| unnamed protein product [Tetraodon nigroviridis]
Length = 413
Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 38/50 (76%)
Query: 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
+PD IK+F+GQIPR+++E DL +F ++G++Y + V++DK TG KG F
Sbjct: 6 EPDAIKLFIGQIPRNLEEKDLKPIFEQFGKIYELTVIKDKYTGMHKGCAF 55
Score = 34.7 bits (78), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 26/45 (57%)
Query: 25 PDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSK 69
P+ +F+ +P+ ++++ +MF +G V + V D+ T QSK
Sbjct: 325 PEGCNIFIYHLPQEFTDSEILQMFLPFGNVISAKVFVDRATNQSK 369
>gi|410960910|ref|XP_003987030.1| PREDICTED: CUGBP Elav-like family member 6 isoform 2 [Felis
catus]
Length = 443
Score = 63.9 bits (154), Expect = 1e-08, Method: Composition-based stats.
Identities = 28/50 (56%), Positives = 37/50 (74%)
Query: 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
D D IK+FVGQIPR +DE DL +F E+GR+Y + VL+D++TG KG F
Sbjct: 3 DHDAIKLFVGQIPRGLDEQDLKPLFEEFGRIYELTVLKDRLTGLHKGCAF 52
Score = 35.4 bits (80), Expect = 4.2, Method: Composition-based stats.
Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Query: 15 RSMSLPEQ--PDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSK 69
+S +LP+Q P+ +F+ +P+ +A+L + F +G V + V D+ T QSK
Sbjct: 343 QSSALPQQQREGPEGCNLFIYHLPQEFGDAELIQTFLPFGAVVSAKVFVDRATNQSK 399
>gi|354473520|ref|XP_003498983.1| PREDICTED: CUGBP Elav-like family member 6-like [Cricetulus
griseus]
Length = 551
Score = 63.9 bits (154), Expect = 1e-08, Method: Composition-based stats.
Identities = 28/50 (56%), Positives = 37/50 (74%)
Query: 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
D D IK+FVGQIPR +DE DL +F E+GR+Y + VL+D++TG KG F
Sbjct: 112 DHDAIKLFVGQIPRGLDEQDLKPLFEEFGRIYELTVLKDRLTGLHKGCAF 161
>gi|301768673|ref|XP_002919757.1| PREDICTED: CUGBP Elav-like family member 6-like, partial
[Ailuropoda melanoleuca]
Length = 473
Score = 63.9 bits (154), Expect = 1e-08, Method: Composition-based stats.
Identities = 28/50 (56%), Positives = 37/50 (74%)
Query: 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
D D IK+FVGQIPR +DE DL +F E+GR+Y + VL+D++TG KG F
Sbjct: 34 DHDAIKLFVGQIPRGLDEQDLKPLFEEFGRIYELTVLKDRLTGLHKGCAF 83
Score = 35.4 bits (80), Expect = 4.2, Method: Composition-based stats.
Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Query: 15 RSMSLPEQ--PDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSK 69
+S +LP+Q P+ +F+ +P+ +A+L + F +G V + V D+ T QSK
Sbjct: 373 QSSALPQQQREGPEGCNLFIYHLPQEFGDAELIQTFLPFGAVVSAKVFVDRATNQSK 429
>gi|281340436|gb|EFB16020.1| hypothetical protein PANDA_008409 [Ailuropoda melanoleuca]
Length = 470
Score = 63.9 bits (154), Expect = 1e-08, Method: Composition-based stats.
Identities = 28/50 (56%), Positives = 37/50 (74%)
Query: 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
D D IK+FVGQIPR +DE DL +F E+GR+Y + VL+D++TG KG F
Sbjct: 31 DHDAIKLFVGQIPRGLDEQDLKPLFEEFGRIYELTVLKDRLTGLHKGCAF 80
Score = 35.4 bits (80), Expect = 4.2, Method: Composition-based stats.
Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Query: 15 RSMSLPEQ--PDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSK 69
+S +LP+Q P+ +F+ +P+ +A+L + F +G V + V D+ T QSK
Sbjct: 370 QSSALPQQQREGPEGCNLFIYHLPQEFGDAELIQTFLPFGAVVSAKVFVDRATNQSK 426
>gi|148694025|gb|EDL25972.1| bruno-like 6, RNA binding protein (Drosophila), isoform CRA_a
[Mus musculus]
Length = 465
Score = 63.9 bits (154), Expect = 1e-08, Method: Composition-based stats.
Identities = 28/50 (56%), Positives = 37/50 (74%)
Query: 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
D D IK+FVGQIPR +DE DL +F E+GR+Y + VL+D++TG KG F
Sbjct: 47 DHDAIKLFVGQIPRGLDEQDLKPLFEEFGRIYELTVLKDRLTGLHKGCAF 96
>gi|395822449|ref|XP_003784530.1| PREDICTED: CUGBP Elav-like family member 6 isoform 1 [Otolemur
garnettii]
Length = 481
Score = 63.9 bits (154), Expect = 1e-08, Method: Composition-based stats.
Identities = 28/50 (56%), Positives = 37/50 (74%)
Query: 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
D D IK+FVGQIPR +DE DL +F E+GR+Y + VL+D++TG KG F
Sbjct: 42 DHDAIKLFVGQIPRGLDEQDLKPLFEEFGRIYELTVLKDRLTGLHKGCAF 91
Score = 35.0 bits (79), Expect = 5.5, Method: Composition-based stats.
Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 9/63 (14%)
Query: 16 SMSLPEQPD---------PDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTG 66
S + P+QP P+ +F+ +P+ +A+L + F +G V + V D+ T
Sbjct: 375 STAFPQQPSALPQQQREGPEGCNLFIYHLPQEFGDAELIQTFLPFGAVVSAKVFVDRATN 434
Query: 67 QSK 69
QSK
Sbjct: 435 QSK 437
>gi|397495530|ref|XP_003818605.1| PREDICTED: CUGBP Elav-like family member 6 isoform 1 [Pan
paniscus]
Length = 481
Score = 63.9 bits (154), Expect = 1e-08, Method: Composition-based stats.
Identities = 28/50 (56%), Positives = 37/50 (74%)
Query: 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
D D IK+FVGQIPR +DE DL +F E+GR+Y + VL+D++TG KG F
Sbjct: 42 DHDAIKLFVGQIPRGLDEQDLKPLFEEFGRIYELTVLKDRLTGLHKGCAF 91
Score = 35.0 bits (79), Expect = 5.5, Method: Composition-based stats.
Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 9/63 (14%)
Query: 16 SMSLPEQPD---------PDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTG 66
S + P+QP P+ +F+ +P+ +A+L + F +G V + V D+ T
Sbjct: 375 STAFPQQPSALPQQQREGPEGCNLFIYHLPQEFGDAELIQTFLPFGAVVSAKVFVDRATN 434
Query: 67 QSK 69
QSK
Sbjct: 435 QSK 437
>gi|302565316|ref|NP_001180884.1| CUGBP Elav-like family member 6 [Macaca mulatta]
Length = 481
Score = 63.9 bits (154), Expect = 1e-08, Method: Composition-based stats.
Identities = 28/50 (56%), Positives = 37/50 (74%)
Query: 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
D D IK+FVGQIPR +DE DL +F E+GR+Y + VL+D++TG KG F
Sbjct: 42 DHDAIKLFVGQIPRGLDEQDLKPLFEEFGRIYELTVLKDRLTGLHKGCAF 91
Score = 35.0 bits (79), Expect = 5.5, Method: Composition-based stats.
Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 9/63 (14%)
Query: 16 SMSLPEQPD---------PDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTG 66
S + P+QP P+ +F+ +P+ +A+L + F +G V + V D+ T
Sbjct: 375 STAFPQQPSALPQQQREGPEGCNLFIYHLPQEFGDAELIQTFLPFGAVVSAKVFVDRATN 434
Query: 67 QSK 69
QSK
Sbjct: 435 QSK 437
>gi|426379617|ref|XP_004056488.1| PREDICTED: CUGBP Elav-like family member 6 isoform 1 [Gorilla
gorilla gorilla]
Length = 481
Score = 63.5 bits (153), Expect = 1e-08, Method: Composition-based stats.
Identities = 28/50 (56%), Positives = 37/50 (74%)
Query: 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
D D IK+FVGQIPR +DE DL +F E+GR+Y + VL+D++TG KG F
Sbjct: 42 DHDAIKLFVGQIPRGLDEQDLKPLFEEFGRIYELTVLKDRLTGLHKGCAF 91
Score = 35.0 bits (79), Expect = 5.5, Method: Composition-based stats.
Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 9/63 (14%)
Query: 16 SMSLPEQPD---------PDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTG 66
S + P+QP P+ +F+ +P+ +A+L + F +G V + V D+ T
Sbjct: 375 STAFPQQPSALPQQQREGPEGCNLFIYHLPQEFGDAELIQTFLPFGAVVSAKVFVDRATN 434
Query: 67 QSK 69
QSK
Sbjct: 435 QSK 437
>gi|426233875|ref|XP_004010933.1| PREDICTED: LOW QUALITY PROTEIN: CUGBP Elav-like family member 6
[Ovis aries]
Length = 451
Score = 63.5 bits (153), Expect = 1e-08, Method: Composition-based stats.
Identities = 28/50 (56%), Positives = 37/50 (74%)
Query: 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
D D IK+FVGQIPR +DE DL +F E+GR+Y + VL+D++TG KG F
Sbjct: 14 DHDAIKLFVGQIPRGLDEQDLKPLFEEFGRIYELTVLKDRLTGLHKGCAF 63
Score = 35.0 bits (79), Expect = 5.1, Method: Composition-based stats.
Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 9/63 (14%)
Query: 16 SMSLPEQPD---------PDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTG 66
S + P+QP P+ +F+ +P+ +A+L + F +G V + V D+ T
Sbjct: 345 STTFPQQPSALPQQQREGPEGCNLFIYHLPQEFGDAELIQTFLPFGAVVSAKVFVDRATN 404
Query: 67 QSK 69
QSK
Sbjct: 405 QSK 407
>gi|70780381|ref|NP_443072.3| CUGBP Elav-like family member 6 isoform 1 [Homo sapiens]
gi|74760888|sp|Q96J87.1|CELF6_HUMAN RecName: Full=CUGBP Elav-like family member 6; Short=CELF-6;
AltName: Full=Bruno-like protein 6; AltName:
Full=CUG-BP- and ETR-3-like factor 6; AltName:
Full=RNA-binding protein BRUNOL-6
gi|15341327|gb|AAK95615.1|AF401233_1 BRUNO-like 6 RNA-binding protein [Homo sapiens]
gi|17046404|gb|AAL34513.1|AF425606_1 RNA-binding protein CELF6 [Homo sapiens]
gi|119598307|gb|EAW77901.1| bruno-like 6, RNA binding protein (Drosophila), isoform CRA_b
[Homo sapiens]
Length = 481
Score = 63.5 bits (153), Expect = 1e-08, Method: Composition-based stats.
Identities = 28/50 (56%), Positives = 37/50 (74%)
Query: 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
D D IK+FVGQIPR +DE DL +F E+GR+Y + VL+D++TG KG F
Sbjct: 42 DHDAIKLFVGQIPRGLDEQDLKPLFEEFGRIYELTVLKDRLTGLHKGCAF 91
Score = 35.0 bits (79), Expect = 5.5, Method: Composition-based stats.
Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 9/63 (14%)
Query: 16 SMSLPEQPD---------PDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTG 66
S + P+QP P+ +F+ +P+ +A+L + F +G V + V D+ T
Sbjct: 375 STAFPQQPSALPQQQREGPEGCNLFIYHLPQEFGDAELIQTFLPFGAVVSAKVFVDRATN 434
Query: 67 QSK 69
QSK
Sbjct: 435 QSK 437
>gi|332236062|ref|XP_003267224.1| PREDICTED: CUGBP Elav-like family member 6 isoform 1 [Nomascus
leucogenys]
Length = 481
Score = 63.5 bits (153), Expect = 1e-08, Method: Composition-based stats.
Identities = 28/50 (56%), Positives = 37/50 (74%)
Query: 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
D D IK+FVGQIPR +DE DL +F E+GR+Y + VL+D++TG KG F
Sbjct: 42 DHDAIKLFVGQIPRGLDEQDLKPLFEEFGRIYELTVLKDRLTGLHKGCAF 91
Score = 35.0 bits (79), Expect = 5.5, Method: Composition-based stats.
Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 9/63 (14%)
Query: 16 SMSLPEQPD---------PDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTG 66
S + P+QP P+ +F+ +P+ +A+L + F +G V + V D+ T
Sbjct: 375 STAFPQQPSALPQQQREGPEGCNLFIYHLPQEFGDAELIQTFLPFGAVVSAKVFVDRATN 434
Query: 67 QSK 69
QSK
Sbjct: 435 QSK 437
>gi|311260847|ref|XP_003128555.1| PREDICTED: CUGBP, Elav-like family member 6 isoform 1 [Sus
scrofa]
Length = 480
Score = 63.5 bits (153), Expect = 1e-08, Method: Composition-based stats.
Identities = 28/50 (56%), Positives = 37/50 (74%)
Query: 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
D D IK+FVGQIPR +DE DL +F E+GR+Y + VL+D++TG KG F
Sbjct: 42 DHDAIKLFVGQIPRGLDEQDLKPLFEEFGRIYELTVLKDRLTGLHKGCAF 91
>gi|21410087|gb|AAH30835.1| Bruno-like 6, RNA binding protein (Drosophila) [Homo sapiens]
Length = 481
Score = 63.5 bits (153), Expect = 1e-08, Method: Composition-based stats.
Identities = 28/50 (56%), Positives = 37/50 (74%)
Query: 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
D D IK+FVGQIPR +DE DL +F E+GR+Y + VL+D++TG KG F
Sbjct: 42 DHDAIKLFVGQIPRGLDEQDLKPLFEEFGRIYELTVLKDRLTGLHKGCAF 91
Score = 35.0 bits (79), Expect = 5.5, Method: Composition-based stats.
Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 9/63 (14%)
Query: 16 SMSLPEQPD---------PDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTG 66
S + P+QP P+ +F+ +P+ +A+L + F +G V + V D+ T
Sbjct: 375 STAFPQQPSALPQQQREGPEGCNLFIYHLPQEFGDAELIQTFLPFGAVVSAKVFVDRATN 434
Query: 67 QSK 69
QSK
Sbjct: 435 QSK 437
>gi|357629319|gb|EHJ78164.1| hypothetical protein KGM_01674 [Danaus plexippus]
Length = 126
Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 40/55 (72%), Gaps = 1/55 (1%)
Query: 26 DFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAAFLKI 80
D +K+F+GQIPR ++E DL MF E+G++Y + VL+DK TG KGK F +L++
Sbjct: 63 DAVKLFIGQIPRHLEEKDLRPMFEEFGKIYELTVLKDKHTGMHKGK-FPEQYLRV 116
>gi|402874763|ref|XP_003901197.1| PREDICTED: CUGBP Elav-like family member 6 isoform 1 [Papio
anubis]
gi|387542958|gb|AFJ72106.1| CUGBP Elav-like family member 6 isoform 1 [Macaca mulatta]
Length = 481
Score = 63.5 bits (153), Expect = 1e-08, Method: Composition-based stats.
Identities = 28/50 (56%), Positives = 37/50 (74%)
Query: 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
D D IK+FVGQIPR +DE DL +F E+GR+Y + VL+D++TG KG F
Sbjct: 42 DHDAIKLFVGQIPRGLDEQDLKPLFEEFGRIYELTVLKDRLTGLHKGCAF 91
Score = 35.0 bits (79), Expect = 5.5, Method: Composition-based stats.
Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 9/63 (14%)
Query: 16 SMSLPEQPD---------PDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTG 66
S + P+QP P+ +F+ +P+ +A+L + F +G V + V D+ T
Sbjct: 375 STAFPQQPSALPQQQREGPEGCNLFIYHLPQEFGDAELIQTFLPFGAVVSAKVFVDRATN 434
Query: 67 QSK 69
QSK
Sbjct: 435 QSK 437
>gi|329663834|ref|NP_001192573.1| CUGBP Elav-like family member 6 [Bos taurus]
gi|296483717|tpg|DAA25832.1| TPA: trinucleotide repeat containing 4 (predicted)-like [Bos
taurus]
Length = 480
Score = 63.5 bits (153), Expect = 1e-08, Method: Composition-based stats.
Identities = 28/50 (56%), Positives = 37/50 (74%)
Query: 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
D D IK+FVGQIPR +DE DL +F E+GR+Y + VL+D++TG KG F
Sbjct: 42 DHDAIKLFVGQIPRGLDEQDLKPLFEEFGRIYELTVLKDRLTGLHKGCAF 91
Score = 35.0 bits (79), Expect = 5.3, Method: Composition-based stats.
Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 9/63 (14%)
Query: 16 SMSLPEQPD---------PDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTG 66
S + P+QP P+ +F+ +P+ +A+L + F +G V + V D+ T
Sbjct: 374 STTFPQQPSALPQQQREGPEGCNLFIYHLPQEFGDAELIQTFLPFGAVVSAKVFVDRATN 433
Query: 67 QSK 69
QSK
Sbjct: 434 QSK 436
>gi|344284431|ref|XP_003413971.1| PREDICTED: LOW QUALITY PROTEIN: CUGBP Elav-like family member
6-like [Loxodonta africana]
Length = 499
Score = 63.5 bits (153), Expect = 1e-08, Method: Composition-based stats.
Identities = 28/50 (56%), Positives = 37/50 (74%)
Query: 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
D D IK+FVGQIPR +DE DL +F E+GR+Y + VL+D++TG KG F
Sbjct: 42 DHDAIKLFVGQIPRGLDEQDLKPLFEEFGRIYELTVLKDRLTGLHKGCAF 91
Score = 35.0 bits (79), Expect = 5.7, Method: Composition-based stats.
Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 9/63 (14%)
Query: 16 SMSLPEQPD---------PDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTG 66
S + P+QP P+ +F+ +P+ +A+L + F +G V + V D+ T
Sbjct: 393 STAFPQQPSALPQQQREGPEGCNLFIYHLPQEFGDAELIQTFLPFGAVVSAKVFVDRATN 452
Query: 67 QSK 69
QSK
Sbjct: 453 QSK 455
>gi|338727851|ref|XP_001916440.2| PREDICTED: CUGBP Elav-like family member 4-like [Equus caballus]
Length = 412
Score = 63.5 bits (153), Expect = 1e-08, Method: Composition-based stats.
Identities = 26/50 (52%), Positives = 38/50 (76%)
Query: 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
D D IK+F+GQIPR++DE DL +F E+G++Y + VL+D+ TG KG +F
Sbjct: 50 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCLF 99
Score = 34.7 bits (78), Expect = 6.7, Method: Composition-based stats.
Identities = 15/45 (33%), Positives = 26/45 (57%)
Query: 25 PDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSK 69
P+ +F+ +P+ +A+L +MF +G V + V D+ T QSK
Sbjct: 364 PEGCNLFIYHLPQEFGDAELMQMFLPFGNVISSKVFVDRATNQSK 408
>gi|148694026|gb|EDL25973.1| bruno-like 6, RNA binding protein (Drosophila), isoform CRA_b
[Mus musculus]
Length = 459
Score = 63.5 bits (153), Expect = 1e-08, Method: Composition-based stats.
Identities = 28/50 (56%), Positives = 37/50 (74%)
Query: 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
D D IK+FVGQIPR +DE DL +F E+GR+Y + VL+D++TG KG F
Sbjct: 42 DHDAIKLFVGQIPRGLDEQDLKPLFEEFGRIYELTVLKDRLTGLHKGCAF 91
>gi|73961237|ref|XP_852916.1| PREDICTED: CUGBP, Elav-like family member 4 isoform 1 [Canis lupus
familiaris]
Length = 488
Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 26/51 (50%), Positives = 37/51 (72%)
Query: 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFE 74
D D IK+F+GQIPR++DE DL +F E+G++Y + VL+D+ TG KG F
Sbjct: 50 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCRFS 100
>gi|297697028|ref|XP_002825676.1| PREDICTED: LOW QUALITY PROTEIN: CUGBP Elav-like family member 6
[Pongo abelii]
Length = 466
Score = 63.5 bits (153), Expect = 1e-08, Method: Composition-based stats.
Identities = 28/50 (56%), Positives = 37/50 (74%)
Query: 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
D D IK+FVGQIPR +DE DL +F E+GR+Y + VL+D++TG KG F
Sbjct: 42 DHDAIKLFVGQIPRGLDEQDLKPLFEEFGRIYELTVLKDRLTGLHKGCAF 91
Score = 35.0 bits (79), Expect = 5.7, Method: Composition-based stats.
Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 9/63 (14%)
Query: 16 SMSLPEQPD---------PDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTG 66
S + P+QP P+ +F+ +P+ +A+L + F +G V + V D+ T
Sbjct: 360 STAFPQQPSALPQQQREGPEGCNLFIYHLPQEFGDAELIQTFLPFGAVVSAKVFVDRATN 419
Query: 67 QSK 69
QSK
Sbjct: 420 QSK 422
>gi|157818811|ref|NP_001100297.1| CUGBP Elav-like family member 6 [Rattus norvegicus]
gi|149041860|gb|EDL95701.1| bruno-like 6, RNA binding protein (Drosophila) (predicted)
[Rattus norvegicus]
Length = 459
Score = 63.5 bits (153), Expect = 1e-08, Method: Composition-based stats.
Identities = 28/50 (56%), Positives = 37/50 (74%)
Query: 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
D D IK+FVGQIPR +DE DL +F E+GR+Y + VL+D++TG KG F
Sbjct: 42 DHDAIKLFVGQIPRGLDEQDLKPLFEEFGRIYELTVLKDRLTGLHKGCAF 91
Score = 35.0 bits (79), Expect = 5.7, Method: Composition-based stats.
Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 9/63 (14%)
Query: 16 SMSLPEQPD---------PDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTG 66
S + P+QP P+ +F+ +P+ +A+L + F +G V + V D+ T
Sbjct: 353 STAFPQQPSALPQQQREGPEGCNLFIYHLPQEFGDAELIQTFLPFGAVVSAKVFVDRATN 412
Query: 67 QSK 69
QSK
Sbjct: 413 QSK 415
>gi|380792869|gb|AFE68310.1| CUGBP Elav-like family member 3 isoform 1, partial [Macaca
mulatta]
Length = 368
Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 37/50 (74%)
Query: 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
+PD IK+FVGQIPR ++E DL +F ++GR++ + V++DK TG KG F
Sbjct: 3 EPDAIKLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAF 52
>gi|345802740|ref|XP_003434959.1| PREDICTED: CUGBP, Elav-like family member 4 [Canis lupus
familiaris]
Length = 448
Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 26/51 (50%), Positives = 37/51 (72%)
Query: 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFE 74
D D IK+F+GQIPR++DE DL +F E+G++Y + VL+D+ TG KG F
Sbjct: 50 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCRFS 100
>gi|363742939|ref|XP_003642747.1| PREDICTED: CUGBP Elav-like family member 3 isoform 1 [Gallus
gallus]
Length = 451
Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 37/50 (74%)
Query: 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
+PD IK+FVGQIPR ++E DL +F ++G++Y + V++DK TG KG F
Sbjct: 3 EPDAIKLFVGQIPRHLEEKDLKPIFEQFGKIYELTVIKDKYTGMHKGCAF 52
>gi|363742943|ref|XP_003642748.1| PREDICTED: CUGBP Elav-like family member 3 isoform 2 [Gallus
gallus]
Length = 464
Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 37/50 (74%)
Query: 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
+PD IK+FVGQIPR ++E DL +F ++G++Y + V++DK TG KG F
Sbjct: 3 EPDAIKLFVGQIPRHLEEKDLKPIFEQFGKIYELTVIKDKYTGMHKGCAF 52
>gi|363742941|ref|XP_428898.3| PREDICTED: CUGBP Elav-like family member 3 isoform 3 [Gallus
gallus]
Length = 401
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 37/50 (74%)
Query: 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
+PD IK+FVGQIPR ++E DL +F ++G++Y + V++DK TG KG F
Sbjct: 3 EPDAIKLFVGQIPRHLEEKDLKPIFEQFGKIYELTVIKDKYTGMHKGCAF 52
>gi|348529973|ref|XP_003452486.1| PREDICTED: CUGBP Elav-like family member 3-like [Oreochromis
niloticus]
Length = 453
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 38/50 (76%)
Query: 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
+PD IK+F+GQIPR+++E DL +F ++G++Y + V++DK TG KG F
Sbjct: 3 EPDAIKLFIGQIPRNLEEKDLKPIFEQFGKIYELTVIKDKYTGMHKGCAF 52
Score = 35.4 bits (80), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 29 KMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
K+FVG + + +AD+ KMF +G + VLR G SKG F
Sbjct: 96 KLFVGMLGKQQTDADVRKMFEPFGSIEECTVLRGP-DGTSKGCAF 139
Score = 34.3 bits (77), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 26/45 (57%)
Query: 25 PDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSK 69
P+ +F+ +P+ ++++ +MF +G V + V D+ T QSK
Sbjct: 365 PEGCNIFIYHLPQEFTDSEILQMFLPFGNVISAKVFVDRATNQSK 409
>gi|71980775|ref|NP_492958.3| Protein UNC-75 [Caenorhabditis elegans]
gi|33469616|gb|AAQ19851.1| putative RNA-binding protein [Caenorhabditis elegans]
gi|38422759|emb|CAB03896.4| Protein UNC-75 [Caenorhabditis elegans]
Length = 514
Score = 63.5 bits (153), Expect = 2e-08, Method: Composition-based stats.
Identities = 26/50 (52%), Positives = 37/50 (74%)
Query: 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
DPD IK+FVGQIPR+++E DL +F ++G++Y +L+DK TG KG F
Sbjct: 25 DPDAIKLFVGQIPRNLEEKDLRHLFEQFGKIYEFTILKDKYTGMHKGCAF 74
Score = 38.1 bits (87), Expect = 0.75, Method: Composition-based stats.
Identities = 15/45 (33%), Positives = 27/45 (60%)
Query: 25 PDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSK 69
PD +F+ +P+ +A+L +MF+ +G + + V D+ T QSK
Sbjct: 426 PDGCNLFIYHLPQEFGDAELIQMFAPFGHIVSAKVFVDRATNQSK 470
>gi|147902406|ref|NP_001090639.1| CUGBP Elav-like family member 5 [Xenopus (Silurana) tropicalis]
gi|152013396|sp|A0JM51.1|CELF5_XENTR RecName: Full=CUGBP Elav-like family member 5; Short=CELF-5;
AltName: Full=Bruno-like protein 5; AltName:
Full=CUG-BP- and ETR-3-like factor 5; AltName:
Full=RNA-binding protein BRUNOL-5
gi|117558445|gb|AAI25740.1| brunol5 protein [Xenopus (Silurana) tropicalis]
Length = 486
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/65 (46%), Positives = 42/65 (64%), Gaps = 8/65 (12%)
Query: 17 MSLPEQP--------DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQS 68
MS PE P D D IK+FVGQIPR+++E DL +F ++G++Y + VL+D+ TG
Sbjct: 28 MSGPEPPAQQSDSMKDLDAIKLFVGQIPRNLEEKDLKPLFEQFGKIYELTVLKDRYTGMH 87
Query: 69 KGKIF 73
KG F
Sbjct: 88 KGCAF 92
Score = 36.6 bits (83), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 26/45 (57%)
Query: 25 PDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSK 69
P+ +F+ +P+ + +LT+MF +G + + V D+ T QSK
Sbjct: 398 PEGCNLFIYHLPQEFGDNELTQMFLPFGNIISSKVFMDRATNQSK 442
Score = 35.8 bits (81), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 34/63 (53%), Gaps = 10/63 (15%)
Query: 29 KMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAAFLKI-----ARA 83
K+FVG + + E ++T MF +G + +VLR G SKG AF+K A+A
Sbjct: 136 KLFVGMLSKQQSEEEVTSMFQAFGSIEECSVLRGP-DGSSKG----CAFVKFSSHAEAQA 190
Query: 84 AIE 86
AI+
Sbjct: 191 AIQ 193
>gi|432098973|gb|ELK28459.1| CUGBP Elav-like family member 4 [Myotis davidii]
Length = 98
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/48 (52%), Positives = 37/48 (77%)
Query: 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGK 71
D D IK+F+GQIPR++DE DL +F E+G++Y + VL+D+ TG KG+
Sbjct: 46 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGE 93
>gi|426379623|ref|XP_004056491.1| PREDICTED: CUGBP Elav-like family member 6 isoform 4 [Gorilla
gorilla gorilla]
Length = 463
Score = 63.5 bits (153), Expect = 2e-08, Method: Composition-based stats.
Identities = 28/50 (56%), Positives = 37/50 (74%)
Query: 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
D D IK+FVGQIPR +DE DL +F E+GR+Y + VL+D++TG KG F
Sbjct: 42 DHDAIKLFVGQIPRGLDEQDLKPLFEEFGRIYELTVLKDRLTGLHKGCAF 91
>gi|345326922|ref|XP_003431097.1| PREDICTED: CUGBP Elav-like family member 3 isoform 2
[Ornithorhynchus anatinus]
Length = 448
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 37/50 (74%)
Query: 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
D D IK+FVGQIPR+++E DL +F E+G++Y + VL+D+ TG KG F
Sbjct: 3 DHDAIKLFVGQIPRNLEEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAF 52
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 26/45 (57%)
Query: 25 PDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSK 69
P+ +F+ +P+ +A+L +MF +G V + V D+ T QSK
Sbjct: 360 PEGCNLFIYHLPQEFGDAELMQMFLPFGNVISAKVFVDRATNQSK 404
>gi|410977611|ref|XP_003995197.1| PREDICTED: LOW QUALITY PROTEIN: CUGBP Elav-like family member 4
[Felis catus]
Length = 482
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/47 (53%), Positives = 36/47 (76%)
Query: 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKG 70
D D IK+F+GQIPR++DE DL +F E+G++Y + VL+D+ TG KG
Sbjct: 50 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKG 96
Score = 36.2 bits (82), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 26/45 (57%)
Query: 25 PDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSK 69
P+ +F+ +P+ +A+L +MF +G V + V D+ T QSK
Sbjct: 407 PEGCNLFIYHLPQEFGDAELMQMFLPFGNVISSKVFVDRATNQSK 451
>gi|345326924|ref|XP_003431098.1| PREDICTED: CUGBP Elav-like family member 3 isoform 3
[Ornithorhynchus anatinus]
Length = 447
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 37/50 (74%)
Query: 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
D D IK+FVGQIPR+++E DL +F E+G++Y + VL+D+ TG KG F
Sbjct: 3 DHDAIKLFVGQIPRNLEEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAF 52
Score = 37.0 bits (84), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 26/45 (57%)
Query: 25 PDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSK 69
P+ +F+ +P+ +A+L +MF +G V + V D+ T QSK
Sbjct: 359 PEGCNLFIYHLPQEFGDAELMQMFLPFGNVISAKVFVDRATNQSK 403
>gi|431893701|gb|ELK03522.1| CUG-BP- and ETR-3-like factor 6 [Pteropus alecto]
Length = 505
Score = 63.5 bits (153), Expect = 2e-08, Method: Composition-based stats.
Identities = 28/50 (56%), Positives = 37/50 (74%)
Query: 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
D D IK+FVGQIPR +DE DL +F E+GR+Y + VL+D++TG KG F
Sbjct: 14 DHDAIKLFVGQIPRGLDEQDLKPLFEEFGRIYELTVLKDRLTGLHKGCAF 63
>gi|149638168|ref|XP_001508614.1| PREDICTED: CUGBP Elav-like family member 3 isoform 1
[Ornithorhynchus anatinus]
Length = 446
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 37/50 (74%)
Query: 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
D D IK+FVGQIPR+++E DL +F E+G++Y + VL+D+ TG KG F
Sbjct: 3 DHDAIKLFVGQIPRNLEEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAF 52
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 26/45 (57%)
Query: 25 PDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSK 69
P+ +F+ +P+ +A+L +MF +G V + V D+ T QSK
Sbjct: 358 PEGCNLFIYHLPQEFGDAELMQMFLPFGNVISAKVFVDRATNQSK 402
>gi|281350687|gb|EFB26271.1| hypothetical protein PANDA_008622 [Ailuropoda melanoleuca]
Length = 140
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/48 (52%), Positives = 37/48 (77%)
Query: 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGK 71
D D IK+F+GQIPR++DE DL +F E+G++Y + VL+D+ TG KG+
Sbjct: 75 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGE 122
>gi|443691317|gb|ELT93212.1| hypothetical protein CAPTEDRAFT_183838 [Capitella teleta]
Length = 462
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 37/50 (74%)
Query: 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
D D IK+FVGQIPR+++E DL +F E+G++Y + VL+D+ TG KG F
Sbjct: 13 DADAIKLFVGQIPRNLEEKDLRPIFEEFGQIYELTVLKDRFTGMHKGCAF 62
Score = 38.9 bits (89), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Query: 29 KMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
K+FVG + + E ++ +MFS YG + +LRD+ G SKG F
Sbjct: 106 KLFVGMLNKQQSEEEVRQMFSPYGSIEECTILRDQ-NGNSKGCAF 149
Score = 36.6 bits (83), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 26/45 (57%)
Query: 25 PDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSK 69
P+ +F+ +P+ +A+L +MF +G V + V D+ T QSK
Sbjct: 374 PEGCNLFIYHLPQEFGDAELAQMFMPFGNVISAKVYIDRATNQSK 418
>gi|431896231|gb|ELK05647.1| CUG-BP- and ETR-3-like factor 4 [Pteropus alecto]
Length = 88
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 37/49 (75%)
Query: 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKI 72
D D IK+F+GQIPR++DE DL +F E+G++Y + VL+D+ TG KG+
Sbjct: 18 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGEC 66
>gi|35505365|gb|AAH57553.1| Tnrc4 protein [Mus musculus]
Length = 494
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 37/50 (74%)
Query: 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
+PD IK+FVGQIPR ++E DL +F ++GR++ + V++DK TG KG F
Sbjct: 3 EPDAIKLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAF 52
Score = 37.0 bits (84), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 26/45 (57%)
Query: 25 PDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSK 69
PD +F+ +P+ ++++ +MF +G V + V D+ T QSK
Sbjct: 406 PDGCNIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSK 450
>gi|354503685|ref|XP_003513911.1| PREDICTED: CUGBP Elav-like family member 3 isoform 1 [Cricetulus
griseus]
Length = 491
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 37/50 (74%)
Query: 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
+PD IK+FVGQIPR ++E DL +F ++GR++ + V++DK TG KG F
Sbjct: 3 EPDAIKLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAF 52
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 26/45 (57%)
Query: 25 PDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSK 69
PD +F+ +P+ ++++ +MF +G V + V D+ T QSK
Sbjct: 403 PDGCNIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSK 447
>gi|332220299|ref|XP_003259294.1| PREDICTED: CUGBP Elav-like family member 3 [Nomascus leucogenys]
Length = 467
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 37/50 (74%)
Query: 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
+PD IK+FVGQIPR ++E DL +F ++GR++ + V++DK TG KG F
Sbjct: 3 EPDAIKLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAF 52
Score = 37.0 bits (84), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 26/45 (57%)
Query: 25 PDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSK 69
PD +F+ +P+ ++++ +MF +G V + V D+ T QSK
Sbjct: 379 PDGCNIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSK 423
>gi|351702706|gb|EHB05625.1| CUG-BP- and ETR-3-like factor 3 [Heterocephalus glaber]
Length = 381
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 37/50 (74%)
Query: 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
+PD IK+FVGQIPR ++E DL +F ++GR++ + V++DK TG KG F
Sbjct: 3 EPDAIKLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAF 52
>gi|345305735|ref|XP_003428371.1| PREDICTED: hypothetical protein LOC100681719 [Ornithorhynchus
anatinus]
Length = 344
Score = 63.2 bits (152), Expect = 2e-08, Method: Composition-based stats.
Identities = 27/55 (49%), Positives = 38/55 (69%)
Query: 16 SMSLPEQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKG 70
S S D D IK+F+GQIPR++DE DL +F E+G++Y + VL+D+ TG KG
Sbjct: 40 SQSTIPMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKG 94
>gi|183637597|gb|ACC64599.1| trinucleotide repeat containing 4 (predicted) [Rhinolophus
ferrumequinum]
Length = 459
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 37/50 (74%)
Query: 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
+PD IK+FVGQIPR ++E DL +F ++GR++ + V++DK TG KG F
Sbjct: 3 EPDAIKLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAF 52
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 26/45 (57%)
Query: 25 PDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSK 69
PD +F+ +P+ ++++ +MF +G V + V D+ T QSK
Sbjct: 371 PDGCNIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSK 415
>gi|27369577|ref|NP_766022.1| CUGBP Elav-like family member 3 [Mus musculus]
gi|81914478|sp|Q8CIN6.1|CELF3_MOUSE RecName: Full=CUGBP Elav-like family member 3; Short=CELF-3;
AltName: Full=Bruno-like protein 1; AltName:
Full=CUG-BP- and ETR-3-like factor 3; AltName:
Full=ELAV-type RNA-binding protein 1; Short=ETR-1;
AltName: Full=RNA-binding protein BRUNOL-1; AltName:
Full=Trinucleotide repeat-containing gene 4 protein
gi|25807803|gb|AAN73885.1| CUG-BP and ETR-3 like factor 3 [Mus musculus]
Length = 465
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 37/50 (74%)
Query: 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
+PD IK+FVGQIPR ++E DL +F ++GR++ + V++DK TG KG F
Sbjct: 3 EPDAIKLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAF 52
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 26/45 (57%)
Query: 25 PDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSK 69
PD +F+ +P+ ++++ +MF +G V + V D+ T QSK
Sbjct: 377 PDGCNIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSK 421
>gi|410968366|ref|XP_003990678.1| PREDICTED: CUGBP Elav-like family member 3 isoform 1 [Felis
catus]
Length = 463
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 37/50 (74%)
Query: 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
+PD IK+FVGQIPR ++E DL +F ++GR++ + V++DK TG KG F
Sbjct: 3 EPDAIKLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAF 52
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 26/45 (57%)
Query: 25 PDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSK 69
PD +F+ +P+ ++++ +MF +G V + V D+ T QSK
Sbjct: 375 PDGCNIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSK 419
>gi|395855962|ref|XP_003800412.1| PREDICTED: CUGBP Elav-like family member 3 [Otolemur garnettii]
Length = 475
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 37/50 (74%)
Query: 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
+PD IK+FVGQIPR ++E DL +F ++GR++ + V++DK TG KG F
Sbjct: 3 EPDAIKLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAF 52
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 26/45 (57%)
Query: 25 PDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSK 69
PD +F+ +P+ ++++ +MF +G V + V D+ T QSK
Sbjct: 387 PDGCNIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSK 431
>gi|148706793|gb|EDL38740.1| trinucleotide repeat containing 4, isoform CRA_f [Mus musculus]
Length = 466
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 37/50 (74%)
Query: 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
+PD IK+FVGQIPR ++E DL +F ++GR++ + V++DK TG KG F
Sbjct: 3 EPDAIKLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAF 52
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 26/45 (57%)
Query: 25 PDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSK 69
PD +F+ +P+ ++++ +MF +G V + V D+ T QSK
Sbjct: 378 PDGCNIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSK 422
>gi|359321739|ref|XP_003639689.1| PREDICTED: CUGBP Elav-like family member 3-like isoform 1 [Canis
lupus familiaris]
Length = 462
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 37/50 (74%)
Query: 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
+PD IK+FVGQIPR ++E DL +F ++GR++ + V++DK TG KG F
Sbjct: 3 EPDAIKLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAF 52
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 26/45 (57%)
Query: 25 PDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSK 69
PD +F+ +P+ ++++ +MF +G V + V D+ T QSK
Sbjct: 374 PDGCNIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSK 418
>gi|71164894|ref|NP_009116.3| CUGBP Elav-like family member 3 isoform 1 [Homo sapiens]
gi|149751259|ref|XP_001492746.1| PREDICTED: CUGBP, Elav-like family member 3 isoform 1 [Equus
caballus]
gi|74756184|sp|Q5SZQ8.1|CELF3_HUMAN RecName: Full=CUGBP Elav-like family member 3; Short=CELF-3;
AltName: Full=Bruno-like protein 1; AltName: Full=CAG
repeat protein 4; AltName: Full=CUG-BP- and ETR-3-like
factor 3; AltName: Full=ELAV-type RNA-binding protein
1; Short=ETR-1; AltName: Full=Expanded repeat domain
protein CAG/CTG 4; AltName: Full=RNA-binding protein
BRUNOL-1; AltName: Full=Trinucleotide repeat-containing
gene 4 protein
gi|85397642|gb|AAI04759.1| Trinucleotide repeat containing 4 [Homo sapiens]
gi|119573806|gb|EAW53421.1| trinucleotide repeat containing 4, isoform CRA_c [Homo sapiens]
gi|168278104|dbj|BAG11030.1| trinucleotide repeat-containing 4 protein [synthetic construct]
Length = 465
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 37/50 (74%)
Query: 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
+PD IK+FVGQIPR ++E DL +F ++GR++ + V++DK TG KG F
Sbjct: 3 EPDAIKLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAF 52
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 26/45 (57%)
Query: 25 PDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSK 69
PD +F+ +P+ ++++ +MF +G V + V D+ T QSK
Sbjct: 377 PDGCNIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSK 421
>gi|355558428|gb|EHH15208.1| hypothetical protein EGK_01267 [Macaca mulatta]
Length = 469
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 37/50 (74%)
Query: 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
+PD IK+FVGQIPR ++E DL +F ++GR++ + V++DK TG KG F
Sbjct: 3 EPDAIKLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAF 52
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 26/45 (57%)
Query: 25 PDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSK 69
PD +F+ +P+ ++++ +MF +G V + V D+ T QSK
Sbjct: 381 PDGCNIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSK 425
>gi|348586638|ref|XP_003479075.1| PREDICTED: CUGBP Elav-like family member 3-like isoform 1 [Cavia
porcellus]
Length = 463
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 37/50 (74%)
Query: 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
+PD IK+FVGQIPR ++E DL +F ++GR++ + V++DK TG KG F
Sbjct: 3 EPDAIKLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAF 52
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 26/45 (57%)
Query: 25 PDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSK 69
PD +F+ +P+ ++++ +MF +G V + V D+ T QSK
Sbjct: 375 PDGCNIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSK 419
>gi|350583381|ref|XP_003481499.1| PREDICTED: CUGBP, Elav-like family member 3 isoform 1 [Sus
scrofa]
gi|397492758|ref|XP_003817287.1| PREDICTED: CUGBP Elav-like family member 3 isoform 1 [Pan
paniscus]
gi|426331463|ref|XP_004026700.1| PREDICTED: CUGBP Elav-like family member 3 isoform 1 [Gorilla
gorilla gorilla]
Length = 464
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 37/50 (74%)
Query: 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
+PD IK+FVGQIPR ++E DL +F ++GR++ + V++DK TG KG F
Sbjct: 3 EPDAIKLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAF 52
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 26/45 (57%)
Query: 25 PDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSK 69
PD +F+ +P+ ++++ +MF +G V + V D+ T QSK
Sbjct: 376 PDGCNIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSK 420
>gi|284005526|ref|NP_001164779.1| CUGBP Elav-like family member 3 [Oryctolagus cuniculus]
gi|217030863|gb|ACJ74025.1| trinucleotide repeat containing 4 (predicted) [Oryctolagus
cuniculus]
Length = 466
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 37/50 (74%)
Query: 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
+PD IK+FVGQIPR ++E DL +F ++GR++ + V++DK TG KG F
Sbjct: 3 EPDAIKLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAF 52
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 26/45 (57%)
Query: 25 PDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSK 69
PD +F+ +P+ ++++ +MF +G V + V D+ T QSK
Sbjct: 378 PDGCNIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSK 422
>gi|281182934|ref|NP_001162429.1| CUGBP Elav-like family member 3 [Papio anubis]
gi|163781027|gb|ABY40803.1| trinucleotide repeat containing 4 (predicted) [Papio anubis]
Length = 471
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 37/50 (74%)
Query: 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
+PD IK+FVGQIPR ++E DL +F ++GR++ + V++DK TG KG F
Sbjct: 3 EPDAIKLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAF 52
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 26/45 (57%)
Query: 25 PDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSK 69
PD +F+ +P+ ++++ +MF +G V + V D+ T QSK
Sbjct: 383 PDGCNIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSK 427
>gi|157821951|ref|NP_001102660.1| CUG-BP- and ETR-3-like factor 3 [Rattus norvegicus]
gi|149030747|gb|EDL85784.1| similar to trinucleotide repeat containing 4 (predicted), isoform
CRA_c [Rattus norvegicus]
Length = 473
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 37/50 (74%)
Query: 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
+PD IK+FVGQIPR ++E DL +F ++GR++ + V++DK TG KG F
Sbjct: 3 EPDAIKLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAF 52
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 26/45 (57%)
Query: 25 PDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSK 69
PD +F+ +P+ ++++ +MF +G V + V D+ T QSK
Sbjct: 385 PDGCNIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSK 429
>gi|25807801|gb|AAN73884.1| CUG-BP and ETR-3 like factor 3 [Homo sapiens]
Length = 465
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 37/50 (74%)
Query: 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
+PD IK+FVGQIPR ++E DL +F ++GR++ + V++DK TG KG F
Sbjct: 3 EPDAIKLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAF 52
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 26/45 (57%)
Query: 25 PDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSK 69
PD +F+ +P+ ++++ +MF +G V + V D+ T QSK
Sbjct: 377 PDGCNIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSK 421
>gi|12746392|gb|AAK07474.1|AF329264_1 CUG-BP and ETR-3 like factor 3 [Homo sapiens]
Length = 462
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 37/50 (74%)
Query: 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
+PD IK+FVGQIPR ++E DL +F ++GR++ + V++DK TG KG F
Sbjct: 3 EPDAIKLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAF 52
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 26/45 (57%)
Query: 25 PDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSK 69
PD +F+ +P+ ++++ +MF +G V + V D+ T QSK
Sbjct: 374 PDGCNIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSK 418
>gi|116003913|ref|NP_001070313.1| CUGBP Elav-like family member 3 [Bos taurus]
gi|122132428|sp|Q08E07.1|CELF3_BOVIN RecName: Full=CUGBP Elav-like family member 3; Short=CELF-3;
AltName: Full=Bruno-like protein 1; AltName:
Full=CUG-BP- and ETR-3-like factor 3; AltName:
Full=ELAV-type RNA-binding protein 1; Short=ETR-1;
AltName: Full=RNA-binding protein BRUNOL-1; AltName:
Full=Trinucleotide repeat-containing gene 4 protein
gi|115305254|gb|AAI23481.1| Trinucleotide repeat containing 4 [Bos taurus]
gi|296489556|tpg|DAA31669.1| TPA: CUG-BP- and ETR-3-like factor 3 [Bos taurus]
Length = 461
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 37/50 (74%)
Query: 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
+PD IK+FVGQIPR ++E DL +F ++GR++ + V++DK TG KG F
Sbjct: 3 EPDAIKLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAF 52
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 26/45 (57%)
Query: 25 PDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSK 69
PD +F+ +P+ ++++ +MF +G V + V D+ T QSK
Sbjct: 373 PDGCNIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSK 417
>gi|440906742|gb|ELR56971.1| CUGBP Elav-like family member 3, partial [Bos grunniens mutus]
Length = 476
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 37/50 (74%)
Query: 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
+PD IK+FVGQIPR ++E DL +F ++GR++ + V++DK TG KG F
Sbjct: 4 EPDAIKLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAF 53
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 26/45 (57%)
Query: 25 PDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSK 69
PD +F+ +P+ ++++ +MF +G V + V D+ T QSK
Sbjct: 388 PDGCNIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSK 432
>gi|359321741|ref|XP_003639690.1| PREDICTED: CUGBP Elav-like family member 3-like isoform 2 [Canis
lupus familiaris]
Length = 412
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 37/50 (74%)
Query: 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
+PD IK+FVGQIPR ++E DL +F ++GR++ + V++DK TG KG F
Sbjct: 3 EPDAIKLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAF 52
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 26/45 (57%)
Query: 25 PDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSK 69
PD +F+ +P+ ++++ +MF +G V + V D+ T QSK
Sbjct: 324 PDGCNIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSK 368
>gi|350583383|ref|XP_003481500.1| PREDICTED: CUGBP, Elav-like family member 3 isoform 2 [Sus
scrofa]
gi|397492760|ref|XP_003817288.1| PREDICTED: CUGBP Elav-like family member 3 isoform 2 [Pan
paniscus]
gi|426331465|ref|XP_004026701.1| PREDICTED: CUGBP Elav-like family member 3 isoform 2 [Gorilla
gorilla gorilla]
Length = 414
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 37/50 (74%)
Query: 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
+PD IK+FVGQIPR ++E DL +F ++GR++ + V++DK TG KG F
Sbjct: 3 EPDAIKLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAF 52
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 26/45 (57%)
Query: 25 PDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSK 69
PD +F+ +P+ ++++ +MF +G V + V D+ T QSK
Sbjct: 326 PDGCNIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSK 370
>gi|348586640|ref|XP_003479076.1| PREDICTED: CUGBP Elav-like family member 3-like isoform 2 [Cavia
porcellus]
gi|410968368|ref|XP_003990679.1| PREDICTED: CUGBP Elav-like family member 3 isoform 2 [Felis
catus]
Length = 413
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 37/50 (74%)
Query: 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
+PD IK+FVGQIPR ++E DL +F ++GR++ + V++DK TG KG F
Sbjct: 3 EPDAIKLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAF 52
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 26/45 (57%)
Query: 25 PDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSK 69
PD +F+ +P+ ++++ +MF +G V + V D+ T QSK
Sbjct: 325 PDGCNIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSK 369
>gi|289547605|ref|NP_001166120.1| CUGBP Elav-like family member 3 isoform 3 [Homo sapiens]
gi|338725073|ref|XP_003365077.1| PREDICTED: CUGBP, Elav-like family member 3 isoform 2 [Equus
caballus]
gi|119573807|gb|EAW53422.1| trinucleotide repeat containing 4, isoform CRA_d [Homo sapiens]
Length = 415
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 37/50 (74%)
Query: 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
+PD IK+FVGQIPR ++E DL +F ++GR++ + V++DK TG KG F
Sbjct: 3 EPDAIKLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAF 52
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 26/45 (57%)
Query: 25 PDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSK 69
PD +F+ +P+ ++++ +MF +G V + V D+ T QSK
Sbjct: 327 PDGCNIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSK 371
>gi|354503687|ref|XP_003513912.1| PREDICTED: CUGBP Elav-like family member 3 isoform 2 [Cricetulus
griseus]
Length = 462
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 37/50 (74%)
Query: 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
+PD IK+FVGQIPR ++E DL +F ++GR++ + V++DK TG KG F
Sbjct: 3 EPDAIKLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAF 52
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 26/45 (57%)
Query: 25 PDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSK 69
PD +F+ +P+ ++++ +MF +G V + V D+ T QSK
Sbjct: 374 PDGCNIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSK 418
>gi|219520290|gb|AAI43227.1| TNRC4 protein [Homo sapiens]
Length = 464
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 37/50 (74%)
Query: 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
+PD IK+FVGQIPR ++E DL +F ++GR++ + V++DK TG KG F
Sbjct: 3 EPDAIKLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAF 52
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 26/45 (57%)
Query: 25 PDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSK 69
PD +F+ +P+ ++++ +MF +G V + V D+ T QSK
Sbjct: 376 PDGCNIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSK 420
>gi|71297206|gb|AAH52491.1| Trinucleotide repeat containing 4 [Homo sapiens]
Length = 464
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 37/50 (74%)
Query: 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
+PD IK+FVGQIPR ++E DL +F ++GR++ + V++DK TG KG F
Sbjct: 3 EPDAIKLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAF 52
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 26/45 (57%)
Query: 25 PDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSK 69
PD +F+ +P+ ++++ +MF +G V + V D+ T QSK
Sbjct: 376 PDGCNIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSK 420
>gi|410033642|ref|XP_524868.3| PREDICTED: CUGBP, Elav-like family member 3 isoform 3 [Pan
troglodytes]
Length = 414
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 37/50 (74%)
Query: 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
+PD IK+FVGQIPR ++E DL +F ++GR++ + V++DK TG KG F
Sbjct: 3 EPDAIKLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAF 52
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 26/45 (57%)
Query: 25 PDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSK 69
PD +F+ +P+ ++++ +MF +G V + V D+ T QSK
Sbjct: 326 PDGCNIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSK 370
>gi|403302658|ref|XP_003941971.1| PREDICTED: CUGBP Elav-like family member 3 isoform 1 [Saimiri
boliviensis boliviensis]
gi|403302660|ref|XP_003941972.1| PREDICTED: CUGBP Elav-like family member 3 isoform 2 [Saimiri
boliviensis boliviensis]
Length = 464
Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 37/50 (74%)
Query: 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
+PD IK+FVGQIPR ++E DL +F ++GR++ + V++DK TG KG F
Sbjct: 3 EPDAIKLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAF 52
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 26/45 (57%)
Query: 25 PDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSK 69
PD +F+ +P+ ++++ +MF +G V + V D+ T QSK
Sbjct: 376 PDGCNIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSK 420
>gi|301767880|ref|XP_002919375.1| PREDICTED: CUGBP Elav-like family member 3-like [Ailuropoda
melanoleuca]
Length = 461
Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 37/50 (74%)
Query: 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
+PD IK+FVGQIPR ++E DL +F ++GR++ + V++DK TG KG F
Sbjct: 3 EPDAIKLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAF 52
Score = 39.7 bits (91), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 27/48 (56%)
Query: 22 QPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSK 69
P PD +F+ +P+ ++++ +MF +G V + V D+ T QSK
Sbjct: 370 HPGPDGCNIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSK 417
>gi|126313728|ref|XP_001366642.1| PREDICTED: CUGBP, Elav-like family member 3 isoform 1
[Monodelphis domestica]
Length = 458
Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 37/50 (74%)
Query: 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
+PD IK+FVGQIPR ++E DL +F ++GR++ + V++DK TG KG F
Sbjct: 3 EPDAIKLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAF 52
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 26/45 (57%)
Query: 25 PDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSK 69
PD +F+ +P+ ++++ +MF +G V + V D+ T QSK
Sbjct: 370 PDGCNIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSK 414
>gi|432852728|ref|XP_004067355.1| PREDICTED: CUGBP Elav-like family member 3-A-like isoform 5
[Oryzias latipes]
Length = 443
Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 37/50 (74%)
Query: 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
D D IK+F+GQIPR+++E DL +F E+G++Y + VL+D+ TG KG F
Sbjct: 38 DHDAIKLFIGQIPRNLEEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAF 87
Score = 37.0 bits (84), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 28/50 (56%)
Query: 20 PEQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSK 69
P+ P+ +F+ +P+ +A+L +MF +G V + V D+ T QSK
Sbjct: 350 PKIKGPEGCNLFIYHLPQEFGDAELMQMFLPFGNVISAKVFVDRATNQSK 399
>gi|296228815|ref|XP_002759970.1| PREDICTED: CUGBP Elav-like family member 3 isoform 1 [Callithrix
jacchus]
Length = 465
Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 37/50 (74%)
Query: 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
+PD IK+FVGQIPR ++E DL +F ++GR++ + V++DK TG KG F
Sbjct: 3 EPDAIKLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAF 52
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 26/45 (57%)
Query: 25 PDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSK 69
PD +F+ +P+ ++++ +MF +G V + V D+ T QSK
Sbjct: 377 PDGCNIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSK 421
>gi|47215211|emb|CAG01418.1| unnamed protein product [Tetraodon nigroviridis]
Length = 107
Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/47 (53%), Positives = 36/47 (76%)
Query: 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKG 70
D D IK+F+GQIPR++DE DL +F E+G++Y + VL+D+ TG KG
Sbjct: 60 DHDAIKLFIGQIPRNLDEKDLRPLFEEFGKIYELTVLKDRFTGMHKG 106
>gi|344275414|ref|XP_003409507.1| PREDICTED: CUGBP Elav-like family member 3 [Loxodonta africana]
Length = 420
Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 37/50 (74%)
Query: 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
+PD IK+FVGQIPR ++E DL +F ++GR++ + V++DK TG KG F
Sbjct: 3 EPDAIKLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAF 52
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 26/45 (57%)
Query: 25 PDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSK 69
PD +F+ +P+ ++++ +MF +G V + V D+ T QSK
Sbjct: 332 PDGCNIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSK 376
>gi|334324674|ref|XP_003340553.1| PREDICTED: CUGBP, Elav-like family member 3 [Monodelphis
domestica]
Length = 408
Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 37/50 (74%)
Query: 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
+PD IK+FVGQIPR ++E DL +F ++GR++ + V++DK TG KG F
Sbjct: 3 EPDAIKLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAF 52
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 26/45 (57%)
Query: 25 PDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSK 69
PD +F+ +P+ ++++ +MF +G V + V D+ T QSK
Sbjct: 320 PDGCNIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSK 364
>gi|444515071|gb|ELV10733.1| CUGBP Elav-like family member 3 [Tupaia chinensis]
Length = 431
Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 37/50 (74%)
Query: 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
+PD IK+FVGQIPR ++E DL +F ++GR++ + V++DK TG KG F
Sbjct: 3 EPDAIKLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAF 52
Score = 40.8 bits (94), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 30/55 (54%)
Query: 15 RSMSLPEQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSK 69
R + L P PD +F+ +P+ ++++ +MF +G V + V D+ T QSK
Sbjct: 333 RFLCLCFHPGPDGCNIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSK 387
>gi|432852720|ref|XP_004067351.1| PREDICTED: CUGBP Elav-like family member 3-A-like isoform 1
[Oryzias latipes]
Length = 481
Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 37/50 (74%)
Query: 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
D D IK+F+GQIPR+++E DL +F E+G++Y + VL+D+ TG KG F
Sbjct: 38 DHDAIKLFIGQIPRNLEEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAF 87
Score = 36.6 bits (83), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 26/45 (57%)
Query: 25 PDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSK 69
P+ +F+ +P+ +A+L +MF +G V + V D+ T QSK
Sbjct: 393 PEGCNLFIYHLPQEFGDAELMQMFLPFGNVISAKVFVDRATNQSK 437
>gi|395535953|ref|XP_003769985.1| PREDICTED: CUGBP Elav-like family member 3 isoform 2 [Sarcophilus
harrisii]
Length = 408
Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 37/50 (74%)
Query: 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
+PD IK+FVGQIPR ++E DL +F ++GR++ + V++DK TG KG F
Sbjct: 3 EPDAIKLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAF 52
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 26/45 (57%)
Query: 25 PDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSK 69
PD +F+ +P+ ++++ +MF +G V + V D+ T QSK
Sbjct: 320 PDGCNIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSK 364
>gi|432852722|ref|XP_004067352.1| PREDICTED: CUGBP Elav-like family member 3-A-like isoform 2
[Oryzias latipes]
Length = 493
Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 37/50 (74%)
Query: 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
D D IK+F+GQIPR+++E DL +F E+G++Y + VL+D+ TG KG F
Sbjct: 38 DHDAIKLFIGQIPRNLEEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAF 87
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 28/50 (56%)
Query: 20 PEQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSK 69
P+ P+ +F+ +P+ +A+L +MF +G V + V D+ T QSK
Sbjct: 400 PKIKGPEGCNLFIYHLPQEFGDAELMQMFLPFGNVISAKVFVDRATNQSK 449
>gi|431896648|gb|ELK06060.1| CUG-BP- and ETR-3-like factor 3 [Pteropus alecto]
Length = 419
Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 37/50 (74%)
Query: 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
+PD IK+FVGQIPR ++E DL +F ++GR++ + V++DK TG KG F
Sbjct: 3 EPDAIKLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAF 52
Score = 36.6 bits (83), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 26/45 (57%)
Query: 25 PDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSK 69
PD +F+ +P+ ++++ +MF +G V + V D+ T QSK
Sbjct: 331 PDGCNIFIYHLPQEFTDSEVLQMFVPFGHVISAKVFVDRATNQSK 375
>gi|348500286|ref|XP_003437704.1| PREDICTED: CUGBP Elav-like family member 3-A-like [Oreochromis
niloticus]
Length = 481
Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 37/50 (74%)
Query: 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
D D IK+F+GQIPR+++E DL +F E+G++Y + VL+D+ TG KG F
Sbjct: 38 DHDAIKLFIGQIPRNLEEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAF 87
Score = 36.6 bits (83), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 26/45 (57%)
Query: 25 PDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSK 69
P+ +F+ +P+ +A+L +MF +G V + V D+ T QSK
Sbjct: 393 PEGCNLFIYHLPQEFGDAELMQMFLPFGNVISAKVFVDRATNQSK 437
>gi|432852726|ref|XP_004067354.1| PREDICTED: CUGBP Elav-like family member 3-A-like isoform 4
[Oryzias latipes]
Length = 494
Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 37/50 (74%)
Query: 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
D D IK+F+GQIPR+++E DL +F E+G++Y + VL+D+ TG KG F
Sbjct: 38 DHDAIKLFIGQIPRNLEEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAF 87
Score = 36.6 bits (83), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 26/45 (57%)
Query: 25 PDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSK 69
P+ +F+ +P+ +A+L +MF +G V + V D+ T QSK
Sbjct: 406 PEGCNLFIYHLPQEFGDAELMQMFLPFGNVISAKVFVDRATNQSK 450
>gi|432852724|ref|XP_004067353.1| PREDICTED: CUGBP Elav-like family member 3-A-like isoform 3
[Oryzias latipes]
Length = 454
Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 37/50 (74%)
Query: 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
D D IK+F+GQIPR+++E DL +F E+G++Y + VL+D+ TG KG F
Sbjct: 38 DHDAIKLFIGQIPRNLEEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAF 87
Score = 36.6 bits (83), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 26/45 (57%)
Query: 25 PDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSK 69
P+ +F+ +P+ +A+L +MF +G V + V D+ T QSK
Sbjct: 366 PEGCNLFIYHLPQEFGDAELMQMFLPFGNVISAKVFVDRATNQSK 410
>gi|410912254|ref|XP_003969605.1| PREDICTED: CUGBP Elav-like family member 3-A-like [Takifugu
rubripes]
Length = 481
Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 37/50 (74%)
Query: 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
D D IK+F+GQIPR+++E DL +F E+G++Y + VL+D+ TG KG F
Sbjct: 38 DHDAIKLFIGQIPRNLEEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAF 87
Score = 36.6 bits (83), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 26/45 (57%)
Query: 25 PDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSK 69
P+ +F+ +P+ +A+L +MF +G V + V D+ T QSK
Sbjct: 393 PEGCNLFIYHLPQEFGDAELMQMFLPFGNVISAKVFVDRATNQSK 437
>gi|395535951|ref|XP_003769984.1| PREDICTED: CUGBP Elav-like family member 3 isoform 1 [Sarcophilus
harrisii]
Length = 458
Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 37/50 (74%)
Query: 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
+PD IK+FVGQIPR ++E DL +F ++GR++ + V++DK TG KG F
Sbjct: 3 EPDAIKLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAF 52
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 26/45 (57%)
Query: 25 PDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSK 69
PD +F+ +P+ ++++ +MF +G V + V D+ T QSK
Sbjct: 370 PDGCNIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSK 414
>gi|344246977|gb|EGW03081.1| CUG-BP- and ETR-3-like factor 3 [Cricetulus griseus]
Length = 447
Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 37/50 (74%)
Query: 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
+PD IK+FVGQIPR ++E DL +F ++GR++ + V++DK TG KG F
Sbjct: 3 EPDAIKLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAF 52
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 26/45 (57%)
Query: 25 PDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSK 69
PD +F+ +P+ ++++ +MF +G V + V D+ T QSK
Sbjct: 359 PDGCNIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSK 403
>gi|22760138|dbj|BAC11082.1| unnamed protein product [Homo sapiens]
Length = 484
Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 37/50 (74%)
Query: 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
D D IK+F+G+IPR++DE DL +F E+G++Y + VL+D+ TG KG F
Sbjct: 50 DHDAIKLFIGRIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAF 99
>gi|338725075|ref|XP_003365078.1| PREDICTED: CUGBP, Elav-like family member 3 isoform 3 [Equus
caballus]
gi|426331469|ref|XP_004026703.1| PREDICTED: CUGBP Elav-like family member 3 isoform 4 [Gorilla
gorilla gorilla]
gi|355758212|gb|EHH61449.1| hypothetical protein EGM_19912 [Macaca fascicularis]
Length = 419
Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 37/50 (74%)
Query: 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
+PD IK+FVGQIPR ++E DL +F ++GR++ + V++DK TG KG F
Sbjct: 3 EPDAIKLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAF 52
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 26/45 (57%)
Query: 25 PDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSK 69
PD +F+ +P+ ++++ +MF +G V + V D+ T QSK
Sbjct: 331 PDGCNIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSK 375
>gi|426218925|ref|XP_004003685.1| PREDICTED: CUGBP Elav-like family member 3 [Ovis aries]
Length = 449
Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 37/50 (74%)
Query: 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
+PD IK+FVGQIPR ++E DL +F ++GR++ + V++DK TG KG F
Sbjct: 3 EPDAIKLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAF 52
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 26/45 (57%)
Query: 25 PDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSK 69
PD +F+ +P+ ++++ +MF +G V + V D+ T QSK
Sbjct: 361 PDGCNIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSK 405
>gi|334314038|ref|XP_003339981.1| PREDICTED: CUGBP Elav-like family member 6 isoform 3 [Monodelphis
domestica]
Length = 470
Score = 62.8 bits (151), Expect = 3e-08, Method: Composition-based stats.
Identities = 27/50 (54%), Positives = 37/50 (74%)
Query: 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
D D IK+FVGQIPR++DE DL +F E+G++Y + VL+D+ TG KG F
Sbjct: 49 DHDAIKLFVGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGVHKGCAF 98
Score = 35.0 bits (79), Expect = 5.3, Method: Composition-based stats.
Identities = 15/45 (33%), Positives = 26/45 (57%)
Query: 25 PDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSK 69
P+ +F+ +P+ +A+L +MF +G V + V D+ T QSK
Sbjct: 382 PEGCNLFIYHLPQEFGDAELMQMFLPFGTVISAKVFVDRATNQSK 426
>gi|310689905|pdb|3NMR|A Chain A, Crystal Structure Of Cugbp1 Rrm12-Rna Complex
gi|310689907|pdb|3NNA|A Chain A, Crystal Structure Of Cugbp1 Rrm12-Rna Complex
Length = 175
Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/67 (49%), Positives = 43/67 (64%), Gaps = 4/67 (5%)
Query: 26 DFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTG--QSKGKIFEAAFLKIARA 83
D IK FVGQ+PR+ E DL ++F +YG VY INVLRD+ QSKG F + + +A
Sbjct: 2 DAIKXFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTR--KA 59
Query: 84 AIEPQKA 90
A+E Q A
Sbjct: 60 ALEAQNA 66
>gi|432114336|gb|ELK36264.1| CUGBP Elav-like family member 3 [Myotis davidii]
Length = 435
Score = 62.4 bits (150), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 37/50 (74%)
Query: 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
+PD IK+FVGQIPR ++E DL +F ++GR++ + V++DK TG KG F
Sbjct: 3 EPDAIKLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAF 52
Score = 38.9 bits (89), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 27/47 (57%)
Query: 23 PDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSK 69
P PD +F+ +P+ ++++ +MF +G V + V D+ T QSK
Sbjct: 345 PGPDGCNIFIYHLPQEFTDSEILQMFIPFGHVISAKVFVDRATNQSK 391
>gi|338717391|ref|XP_003363632.1| PREDICTED: LOW QUALITY PROTEIN: CUGBP Elav-like family member
6-like [Equus caballus]
Length = 540
Score = 62.4 bits (150), Expect = 3e-08, Method: Composition-based stats.
Identities = 28/50 (56%), Positives = 37/50 (74%)
Query: 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
D D IK+FVGQIPR +DE DL +F E+GR+Y + VL+D++TG KG F
Sbjct: 146 DHDAIKLFVGQIPRGLDEQDLKPLFEEFGRIYELTVLKDRLTGLHKGCAF 195
Score = 34.3 bits (77), Expect = 9.6, Method: Composition-based stats.
Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 9/63 (14%)
Query: 16 SMSLPEQPD---------PDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTG 66
S + P+QP P+ +F+ +P+ +A+L + F +G V + V D+ T
Sbjct: 434 STAFPQQPSALPQQQREGPEGCNLFIYHLPQEFGDAELIQTFLPFGAVVSAKVFVDRATN 493
Query: 67 QSK 69
QSK
Sbjct: 494 QSK 496
>gi|395831373|ref|XP_003788777.1| PREDICTED: CUGBP Elav-like family member 5 [Otolemur garnettii]
Length = 485
Score = 62.4 bits (150), Expect = 3e-08, Method: Composition-based stats.
Identities = 31/64 (48%), Positives = 40/64 (62%), Gaps = 8/64 (12%)
Query: 18 SLPEQP--------DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSK 69
S PE P D D IK+FVGQIPR++DE DL +F ++GR+Y + VL+D TG K
Sbjct: 27 SAPEPPSGQPDGMKDLDAIKLFVGQIPRNLDEKDLKPLFEQFGRIYELTVLKDPYTGMHK 86
Query: 70 GKIF 73
G F
Sbjct: 87 GCAF 90
Score = 35.0 bits (79), Expect = 5.1, Method: Composition-based stats.
Identities = 14/45 (31%), Positives = 26/45 (57%)
Query: 25 PDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSK 69
P+ +F+ +P+ + +LT+MF +G + + V D+ T QSK
Sbjct: 397 PEGCNLFIYHLPQEFGDTELTQMFLPFGNIISSKVFMDRATNQSK 441
>gi|339252338|ref|XP_003371392.1| putative RNA recognition [Trichinella spiralis]
gi|316968371|gb|EFV52652.1| putative RNA recognition [Trichinella spiralis]
Length = 126
Score = 62.4 bits (150), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 36/50 (72%)
Query: 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
D D IK+FVGQIPR+++E DL +F ++G++Y +L+DK TG KG F
Sbjct: 49 DADAIKLFVGQIPRNLEEKDLRTLFEQFGKIYEFTILKDKFTGMHKGCAF 98
>gi|426230734|ref|XP_004009417.1| PREDICTED: CUGBP Elav-like family member 5 [Ovis aries]
Length = 579
Score = 62.0 bits (149), Expect = 5e-08, Method: Composition-based stats.
Identities = 31/64 (48%), Positives = 40/64 (62%), Gaps = 8/64 (12%)
Query: 18 SLPEQP--------DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSK 69
S PE P D D IK+FVGQIPR++DE DL +F ++GR+Y + VL+D TG K
Sbjct: 52 SGPEPPGGQPDGTKDLDAIKLFVGQIPRNLDEKDLKPLFEQFGRIYELTVLKDPYTGMHK 111
Query: 70 GKIF 73
G F
Sbjct: 112 GCAF 115
Score = 35.4 bits (80), Expect = 4.4, Method: Composition-based stats.
Identities = 14/45 (31%), Positives = 26/45 (57%)
Query: 25 PDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSK 69
P+ +F+ +P+ + +LT+MF +G + + V D+ T QSK
Sbjct: 427 PEGCNLFIYHLPQEFGDTELTQMFLPFGNIISSKVFMDRATNQSK 471
>gi|301776386|ref|XP_002923617.1| PREDICTED: CUGBP Elav-like family member 5-like [Ailuropoda
melanoleuca]
Length = 418
Score = 62.0 bits (149), Expect = 5e-08, Method: Composition-based stats.
Identities = 27/50 (54%), Positives = 36/50 (72%)
Query: 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
D D IK+FVGQIPR++DE DL +F ++GR+Y + VL+D TG KG F
Sbjct: 3 DLDAIKLFVGQIPRNLDEKDLKPLFEQFGRIYELTVLKDPYTGMHKGCAF 52
Score = 35.4 bits (80), Expect = 4.1, Method: Composition-based stats.
Identities = 14/45 (31%), Positives = 26/45 (57%)
Query: 25 PDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSK 69
P+ +F+ +P+ + +LT+MF +G + + V D+ T QSK
Sbjct: 330 PEGCNLFIYHLPQEFGDTELTQMFLPFGNIISSKVFMDRATNQSK 374
>gi|194389144|dbj|BAG61589.1| unnamed protein product [Homo sapiens]
Length = 145
Score = 62.0 bits (149), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 37/50 (74%)
Query: 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
+PD IK+FVGQIPR ++E DL +F ++GR++ + V++DK TG KG F
Sbjct: 3 EPDAIKLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAF 52
>gi|120419456|gb|ABM21547.1| trinucleotide repeat containing 4 [Bos taurus]
Length = 139
Score = 62.0 bits (149), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 37/50 (74%)
Query: 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
+PD IK+FVGQIPR ++E DL +F ++GR++ + V++DK TG KG F
Sbjct: 3 EPDAIKLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAF 52
>gi|358413030|ref|XP_610805.5| PREDICTED: CUGBP, Elav-like family member 5 [Bos taurus]
Length = 562
Score = 61.6 bits (148), Expect = 6e-08, Method: Composition-based stats.
Identities = 31/64 (48%), Positives = 40/64 (62%), Gaps = 8/64 (12%)
Query: 18 SLPEQP--------DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSK 69
S PE P D D IK+FVGQIPR++DE DL +F ++GR+Y + VL+D TG K
Sbjct: 104 SGPEPPGGQPDGTKDLDAIKLFVGQIPRNLDEKDLKPLFEQFGRIYELTVLKDPYTGMHK 163
Query: 70 GKIF 73
G F
Sbjct: 164 GCAF 167
Score = 35.4 bits (80), Expect = 4.8, Method: Composition-based stats.
Identities = 14/45 (31%), Positives = 26/45 (57%)
Query: 25 PDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSK 69
P+ +F+ +P+ + +LT+MF +G + + V D+ T QSK
Sbjct: 474 PEGCNLFIYHLPQEFGDTELTQMFLPFGNIISSKVFMDRATNQSK 518
>gi|359322160|ref|XP_854891.3| PREDICTED: CUGBP, Elav-like family member 5 [Canis lupus
familiaris]
Length = 485
Score = 61.6 bits (148), Expect = 6e-08, Method: Composition-based stats.
Identities = 31/64 (48%), Positives = 40/64 (62%), Gaps = 8/64 (12%)
Query: 18 SLPEQP--------DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSK 69
S PE P D D IK+FVGQIPR++DE DL +F ++GR+Y + VL+D TG K
Sbjct: 27 SGPEPPGGQPDGMKDLDAIKLFVGQIPRNLDEKDLKPLFEQFGRIYELTVLKDPYTGMHK 86
Query: 70 GKIF 73
G F
Sbjct: 87 GCAF 90
Score = 35.0 bits (79), Expect = 5.0, Method: Composition-based stats.
Identities = 14/45 (31%), Positives = 26/45 (57%)
Query: 25 PDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSK 69
P+ +F+ +P+ + +LT+MF +G + + V D+ T QSK
Sbjct: 397 PEGCNLFIYHLPQEFGDTELTQMFLPFGNIISSKVFMDRATNQSK 441
>gi|326675888|ref|XP_003200459.1| PREDICTED: CUGBP Elav-like family member 3-A-like [Danio rerio]
Length = 516
Score = 61.6 bits (148), Expect = 6e-08, Method: Composition-based stats.
Identities = 25/50 (50%), Positives = 37/50 (74%)
Query: 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
D D IK+F+GQIPR+++E DL +F E+G++Y + VL+D+ TG KG F
Sbjct: 30 DHDAIKLFIGQIPRNLEEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAF 79
Score = 35.8 bits (81), Expect = 3.8, Method: Composition-based stats.
Identities = 15/45 (33%), Positives = 26/45 (57%)
Query: 25 PDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSK 69
P+ +F+ +P+ +A+L +MF +G V + V D+ T QSK
Sbjct: 381 PEGCNLFIYHLPQEFGDAELMQMFLPFGNVISAKVFVDRATNQSK 425
>gi|312094646|ref|XP_003148093.1| hypothetical protein LOAG_12531 [Loa loa]
Length = 113
Score = 61.6 bits (148), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 42/69 (60%), Gaps = 6/69 (8%)
Query: 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAAFLKIAR- 82
D D IK+FVGQIPR+++E DL +F +G++Y +L+DK TG KG AFL
Sbjct: 40 DADTIKLFVGQIPRNLEEKDLRHLFETFGKIYEFTILKDKYTGLHKG----CAFLTYCHR 95
Query: 83 -AAIEPQKA 90
+A+ Q A
Sbjct: 96 DSAVRCQAA 104
>gi|170584368|ref|XP_001896973.1| RNA binding protein [Brugia malayi]
gi|158595662|gb|EDP34201.1| RNA binding protein, putative [Brugia malayi]
Length = 489
Score = 61.6 bits (148), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 35/50 (70%)
Query: 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
D D IK+FVGQIPR+++E DL +F +G++Y +L+DK TG KG F
Sbjct: 22 DADTIKLFVGQIPRNLEEKDLRHLFETFGKIYEFTILKDKYTGLHKGCAF 71
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 26/45 (57%)
Query: 25 PDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSK 69
P+ +F+ +P+ +A+L +MF +G V + V D+ T QSK
Sbjct: 403 PEGCNLFIYHLPQEFGDAELMQMFMPFGHVISAKVFIDRATNQSK 447
Score = 34.3 bits (77), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 36/65 (55%), Gaps = 6/65 (9%)
Query: 18 SLPEQP-DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAA 76
S PE P + + K+FVG + + +E D+ +F+ +G + + VLR G SKG A
Sbjct: 109 SRPESPKNAEERKLFVGMLSKQHNEDDVRSLFAPFGVIDEVTVLRG-ADGLSKG----CA 163
Query: 77 FLKIA 81
F+K A
Sbjct: 164 FVKFA 168
>gi|189241911|ref|XP_971057.2| PREDICTED: similar to bruno-3 CG12478-PA [Tribolium castaneum]
Length = 569
Score = 61.2 bits (147), Expect = 7e-08, Method: Composition-based stats.
Identities = 28/52 (53%), Positives = 35/52 (67%)
Query: 26 DFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAAF 77
D IK+FVGQIPR ++E DL MF E+G++Y VL+DK TG KG F F
Sbjct: 122 DVIKLFVGQIPRHLEEDDLRPMFEEFGKIYEFTVLKDKYTGMHKGCAFLTYF 173
Score = 34.7 bits (78), Expect = 7.5, Method: Composition-based stats.
Identities = 15/45 (33%), Positives = 26/45 (57%)
Query: 25 PDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSK 69
P+ +F+ +P+ +A+L +MF +G V + V D+ T QSK
Sbjct: 481 PEGCNLFIYHLPQEFGDAELMQMFLPFGNVISSKVFIDRATNQSK 525
>gi|198431689|ref|XP_002121627.1| PREDICTED: similar to CUG triplet repeat, RNA binding protein 2
[Ciona intestinalis]
Length = 498
Score = 61.2 bits (147), Expect = 7e-08, Method: Composition-based stats.
Identities = 28/68 (41%), Positives = 45/68 (66%), Gaps = 2/68 (2%)
Query: 21 EQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAAFLKI 80
+QPDPD IKMF+GQIP++ E+++ + YG +Y +N+LR+K + SKG F + +
Sbjct: 13 DQPDPDAIKMFIGQIPKTWVESEVREFLEGYGPIYQLNILREKGSVMSKGCCFVTFYTR- 71
Query: 81 ARAAIEPQ 88
+AA+ Q
Sbjct: 72 -KAALAAQ 78
>gi|355754997|gb|EHH58864.1| CUGBP Elav-like family member 4, partial [Macaca fascicularis]
Length = 373
Score = 61.2 bits (147), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 24/46 (52%), Positives = 35/46 (76%)
Query: 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSK 69
D D IK+F+GQIPR++DE DL +F E+G++Y + VL+D+ TG K
Sbjct: 50 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHK 95
>gi|281337967|gb|EFB13551.1| hypothetical protein PANDA_012783 [Ailuropoda melanoleuca]
Length = 462
Score = 61.2 bits (147), Expect = 8e-08, Method: Composition-based stats.
Identities = 31/64 (48%), Positives = 40/64 (62%), Gaps = 8/64 (12%)
Query: 18 SLPEQP--------DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSK 69
S PE P D D IK+FVGQIPR++DE DL +F ++GR+Y + VL+D TG K
Sbjct: 7 SGPEPPGGQPDGMKDLDAIKLFVGQIPRNLDEKDLKPLFEQFGRIYELTVLKDPYTGMHK 66
Query: 70 GKIF 73
G F
Sbjct: 67 GCAF 70
Score = 37.4 bits (85), Expect = 1.1, Method: Composition-based stats.
Identities = 15/47 (31%), Positives = 27/47 (57%)
Query: 23 PDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSK 69
P P+ +F+ +P+ + +LT+MF +G + + V D+ T QSK
Sbjct: 372 PRPEGCNLFIYHLPQEFGDTELTQMFLPFGNIISSKVFMDRATNQSK 418
>gi|355701918|gb|EHH29271.1| CUGBP Elav-like family member 4, partial [Macaca mulatta]
Length = 409
Score = 61.2 bits (147), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 24/46 (52%), Positives = 35/46 (76%)
Query: 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSK 69
D D IK+F+GQIPR++DE DL +F E+G++Y + VL+D+ TG K
Sbjct: 50 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHK 95
>gi|94734148|emb|CAK04299.1| novel protein similar to vertebrate trinucleotide repeat containing
4 (TNRC4) [Danio rerio]
Length = 141
Score = 60.8 bits (146), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 37/50 (74%)
Query: 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
D D IK+F+GQIPR+++E DL +F ++G+++ + VL+D+ TG KG F
Sbjct: 62 DQDAIKLFIGQIPRNLEEKDLKPLFEQFGKIHELTVLKDRYTGMHKGCAF 111
>gi|307191999|gb|EFN75389.1| CUG-BP- and ETR-3-like factor 5 [Harpegnathos saltator]
Length = 98
Score = 60.8 bits (146), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 29/57 (50%), Positives = 36/57 (63%)
Query: 16 SMSLPEQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKI 72
S S P IK+FVGQIPR ++E L MF E+G++Y VL+DK TG KGKI
Sbjct: 6 STSPPSSNGDGAIKLFVGQIPRHLEEDALRPMFEEFGKIYEFTVLKDKYTGMHKGKI 62
>gi|24762232|ref|NP_068757.2| CUGBP Elav-like family member 5 isoform 1 [Homo sapiens]
gi|402903694|ref|XP_003914695.1| PREDICTED: CUGBP Elav-like family member 5 [Papio anubis]
gi|74762534|sp|Q8N6W0.1|CELF5_HUMAN RecName: Full=CUGBP Elav-like family member 5; Short=CELF-5;
AltName: Full=Bruno-like protein 5; AltName:
Full=CUG-BP- and ETR-3-like factor 5; AltName:
Full=RNA-binding protein BRUNOL-5
gi|20380221|gb|AAH28101.1| Bruno-like 5, RNA binding protein (Drosophila) [Homo sapiens]
gi|119589733|gb|EAW69327.1| bruno-like 5, RNA binding protein (Drosophila), isoform CRA_a
[Homo sapiens]
gi|119589734|gb|EAW69328.1| bruno-like 5, RNA binding protein (Drosophila), isoform CRA_a
[Homo sapiens]
gi|123981490|gb|ABM82574.1| bruno-like 5, RNA binding protein (Drosophila) [synthetic
construct]
gi|123996323|gb|ABM85763.1| bruno-like 5, RNA binding protein (Drosophila) [synthetic
construct]
Length = 485
Score = 60.8 bits (146), Expect = 9e-08, Method: Composition-based stats.
Identities = 31/64 (48%), Positives = 39/64 (60%), Gaps = 8/64 (12%)
Query: 18 SLPEQP--------DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSK 69
S PE P D D IK+FVGQIPR +DE DL +F ++GR+Y + VL+D TG K
Sbjct: 27 SGPEPPGGQPDGMKDLDAIKLFVGQIPRHLDEKDLKPLFEQFGRIYELTVLKDPYTGMHK 86
Query: 70 GKIF 73
G F
Sbjct: 87 GCAF 90
Score = 35.0 bits (79), Expect = 5.0, Method: Composition-based stats.
Identities = 14/45 (31%), Positives = 26/45 (57%)
Query: 25 PDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSK 69
P+ +F+ +P+ + +LT+MF +G + + V D+ T QSK
Sbjct: 397 PEGCNLFIYHLPQEFGDTELTQMFLPFGNIISSKVFMDRATNQSK 441
>gi|12746396|gb|AAK07476.1|AF329266_1 CUG-BP and ETR-3 like factor 5 [Homo sapiens]
Length = 481
Score = 60.8 bits (146), Expect = 9e-08, Method: Composition-based stats.
Identities = 31/64 (48%), Positives = 39/64 (60%), Gaps = 8/64 (12%)
Query: 18 SLPEQP--------DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSK 69
S PE P D D IK+FVGQIPR +DE DL +F ++GR+Y + VL+D TG K
Sbjct: 27 SGPEPPGGQPDGMKDLDAIKLFVGQIPRHLDEKDLKPLFEQFGRIYELTVLKDPYTGMHK 86
Query: 70 GKIF 73
G F
Sbjct: 87 GCAF 90
Score = 35.0 bits (79), Expect = 5.1, Method: Composition-based stats.
Identities = 14/45 (31%), Positives = 26/45 (57%)
Query: 25 PDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSK 69
P+ +F+ +P+ + +LT+MF +G + + V D+ T QSK
Sbjct: 397 PEGCNLFIYHLPQEFGDTELTQMFLPFGNIISSKVFMDRATNQSK 441
>gi|47221605|emb|CAF97870.1| unnamed protein product [Tetraodon nigroviridis]
Length = 400
Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 36/48 (75%)
Query: 26 DFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
D IK+FVGQIPR+++E DL +F ++G++Y + V++DK TG KG F
Sbjct: 8 DAIKLFVGQIPRNLEEKDLKPIFEQFGKIYELTVIKDKYTGMHKGCAF 55
Score = 35.8 bits (81), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 26/45 (57%)
Query: 25 PDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSK 69
P+ +F+ +P+ +++L +MF +G V + V D+ T QSK
Sbjct: 312 PEGCNIFIYHLPQEFSDSELLQMFLPFGNVISAKVFVDRATNQSK 356
>gi|432116895|gb|ELK37482.1| CUGBP Elav-like family member 5 [Myotis davidii]
Length = 426
Score = 60.8 bits (146), Expect = 1e-07, Method: Composition-based stats.
Identities = 26/47 (55%), Positives = 35/47 (74%)
Query: 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKG 70
D D IK+FVGQIPR++DE DL +F ++GR+Y + VL+D TG KG
Sbjct: 3 DLDAIKLFVGQIPRNLDEKDLKPLFEQFGRIYELTVLKDPYTGMHKG 49
Score = 35.0 bits (79), Expect = 5.0, Method: Composition-based stats.
Identities = 14/45 (31%), Positives = 26/45 (57%)
Query: 25 PDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSK 69
P+ +F+ +P+ + +LT+MF +G + + V D+ T QSK
Sbjct: 338 PEGCNLFIYHLPQEFGDTELTQMFLPFGNIISSKVFMDRATNQSK 382
>gi|410928558|ref|XP_003977667.1| PREDICTED: CUGBP Elav-like family member 3-like [Takifugu
rubripes]
Length = 435
Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 37/50 (74%)
Query: 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
+ D IK+FVGQIPR+++E DL +F ++G++Y + V++DK TG KG F
Sbjct: 3 EADAIKLFVGQIPRNLEEKDLKPIFEQFGKIYELTVIKDKYTGMHKGCAF 52
Score = 35.8 bits (81), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 26/45 (57%)
Query: 25 PDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSK 69
P+ +F+ +P+ +++L +MF +G V + V D+ T QSK
Sbjct: 347 PEGCNIFIYHLPQEFSDSELLQMFLPFGNVISAKVFVDRATNQSK 391
>gi|402593619|gb|EJW87546.1| hypothetical protein WUBG_01540 [Wuchereria bancrofti]
Length = 149
Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 42/69 (60%), Gaps = 6/69 (8%)
Query: 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAAFLKIAR- 82
D D IK+FVGQIPR+++E DL +F +G++Y +L+DK TG KG AFL
Sbjct: 22 DADTIKLFVGQIPRNLEEKDLRHLFETFGKIYEFTILKDKYTGLHKG----CAFLTYCHR 77
Query: 83 -AAIEPQKA 90
+AI Q A
Sbjct: 78 DSAIRCQAA 86
>gi|289547698|ref|NP_001166144.1| CUGBP Elav-like family member 5 isoform 2 [Homo sapiens]
Length = 409
Score = 60.8 bits (146), Expect = 1e-07, Method: Composition-based stats.
Identities = 31/64 (48%), Positives = 39/64 (60%), Gaps = 8/64 (12%)
Query: 18 SLPEQP--------DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSK 69
S PE P D D IK+FVGQIPR +DE DL +F ++GR+Y + VL+D TG K
Sbjct: 27 SGPEPPGGQPDGMKDLDAIKLFVGQIPRHLDEKDLKPLFEQFGRIYELTVLKDPYTGMHK 86
Query: 70 GKIF 73
G F
Sbjct: 87 GCAF 90
>gi|390468527|ref|XP_003733960.1| PREDICTED: CUGBP Elav-like family member 6 isoform 2 [Callithrix
jacchus]
Length = 454
Score = 60.8 bits (146), Expect = 1e-07, Method: Composition-based stats.
Identities = 27/50 (54%), Positives = 36/50 (72%)
Query: 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
D D IK+FVGQIPR +DE DL +F E+G +Y + VL+D++TG KG F
Sbjct: 42 DHDAIKLFVGQIPRGLDEQDLKPLFEEFGCIYELTVLKDRLTGLHKGCAF 91
Score = 34.7 bits (78), Expect = 6.8, Method: Composition-based stats.
Identities = 23/63 (36%), Positives = 34/63 (53%), Gaps = 10/63 (15%)
Query: 29 KMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAAFLKI-----ARA 83
K+FVG + + DE D+ ++F +G + VLR G SKG AF+K A+A
Sbjct: 135 KLFVGMLGKQQDEEDVRRLFQPFGHIEECTVLRSP-DGTSKG----CAFVKFGSQGEAQA 189
Query: 84 AIE 86
AI+
Sbjct: 190 AIQ 192
>gi|317419091|emb|CBN81129.1| CUG-BP-and ETR-3-like factor 4 [Dicentrarchus labrax]
Length = 527
Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 24/46 (52%), Positives = 35/46 (76%)
Query: 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSK 69
D D IK+F+GQIPR++DE DL +F E+G++Y + VL+D+ TG K
Sbjct: 47 DHDAIKLFIGQIPRNLDEKDLRPLFEEFGKIYELTVLKDRFTGMHK 92
Score = 34.7 bits (78), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 25/45 (55%)
Query: 25 PDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSK 69
P+ +F+ +P+ + +L +MF +G V + V D+ T QSK
Sbjct: 439 PEGCNLFIYHLPQEFGDGELMQMFLPFGNVISSKVFVDRATNQSK 483
>gi|348526886|ref|XP_003450950.1| PREDICTED: CUGBP Elav-like family member 3-like isoform 1
[Oreochromis niloticus]
Length = 458
Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 36/48 (75%)
Query: 26 DFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
D IK+FVGQIPR+++E DL +F ++G++Y + V++DK TG KG F
Sbjct: 5 DAIKLFVGQIPRNLEEKDLKPIFEQFGKIYELTVIKDKYTGMHKGCAF 52
Score = 34.7 bits (78), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 26/45 (57%)
Query: 25 PDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSK 69
P+ +F+ +P+ ++++ +MF +G V + V D+ T QSK
Sbjct: 370 PEGCNIFIYHLPQEFSDSEMLQMFLPFGNVISAKVFVDRATNQSK 414
>gi|62087714|dbj|BAD92304.1| bruno-like 5, RNA binding protein variant [Homo sapiens]
Length = 421
Score = 60.8 bits (146), Expect = 1e-07, Method: Composition-based stats.
Identities = 31/64 (48%), Positives = 39/64 (60%), Gaps = 8/64 (12%)
Query: 18 SLPEQP--------DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSK 69
S PE P D D IK+FVGQIPR +DE DL +F ++GR+Y + VL+D TG K
Sbjct: 39 SGPEPPGGQPDGMKDLDAIKLFVGQIPRHLDEKDLKPLFEQFGRIYELTVLKDPYTGMHK 98
Query: 70 GKIF 73
G F
Sbjct: 99 GCAF 102
>gi|432908655|ref|XP_004077968.1| PREDICTED: CUGBP Elav-like family member 3-like [Oryzias latipes]
Length = 457
Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 36/48 (75%)
Query: 26 DFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
D IK+FVGQIPR+++E DL +F ++G++Y + V++DK TG KG F
Sbjct: 5 DAIKLFVGQIPRNLEEKDLKPIFEQFGKIYELTVIKDKYTGMHKGCAF 52
Score = 34.7 bits (78), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 26/45 (57%)
Query: 25 PDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSK 69
P+ +F+ +P+ ++++ +MF +G V + V D+ T QSK
Sbjct: 369 PEGCNIFIYHLPQEFSDSEMLQMFLPFGNVISAKVFVDRATNQSK 413
>gi|148922839|ref|NP_001092221.1| uncharacterized protein LOC571425 [Danio rerio]
gi|148745179|gb|AAI42895.1| Zgc:165603 protein [Danio rerio]
Length = 155
Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 37/50 (74%)
Query: 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
D D IK+F+GQIPR+++E DL +F ++G+++ + VL+D+ TG KG F
Sbjct: 78 DQDAIKLFIGQIPRNLEEKDLKPLFEQFGKIHELTVLKDRYTGMHKGCAF 127
>gi|348526888|ref|XP_003450951.1| PREDICTED: CUGBP Elav-like family member 3-like isoform 2
[Oreochromis niloticus]
Length = 405
Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 37/50 (74%)
Query: 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
+ D IK+FVGQIPR+++E DL +F ++G++Y + V++DK TG KG F
Sbjct: 3 EADAIKLFVGQIPRNLEEKDLKPIFEQFGKIYELTVIKDKYTGMHKGCAF 52
Score = 34.7 bits (78), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 26/45 (57%)
Query: 25 PDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSK 69
P+ +F+ +P+ ++++ +MF +G V + V D+ T QSK
Sbjct: 317 PEGCNIFIYHLPQEFSDSEMLQMFLPFGNVISAKVFVDRATNQSK 361
>gi|268561214|ref|XP_002646391.1| C. briggsae CBR-UNC-75 protein [Caenorhabditis briggsae]
Length = 550
Score = 60.5 bits (145), Expect = 1e-07, Method: Composition-based stats.
Identities = 25/50 (50%), Positives = 36/50 (72%)
Query: 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
D D IK+FVGQIPR+++E DL +F ++G++Y +L+DK TG KG F
Sbjct: 25 DADAIKLFVGQIPRNLEEKDLRHLFEQFGKIYEFTILKDKYTGMHKGCAF 74
Score = 38.5 bits (88), Expect = 0.47, Method: Composition-based stats.
Identities = 16/45 (35%), Positives = 27/45 (60%)
Query: 25 PDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSK 69
PD +F+ +P+ +A+L +MF+ +G V + V D+ T QSK
Sbjct: 462 PDGCNLFIYHLPQEFGDAELIQMFAPFGHVVSAKVFVDRATNQSK 506
>gi|432882385|ref|XP_004074004.1| PREDICTED: uncharacterized protein LOC101172176 [Oryzias latipes]
Length = 1197
Score = 60.5 bits (145), Expect = 1e-07, Method: Composition-based stats.
Identities = 23/52 (44%), Positives = 40/52 (76%)
Query: 21 EQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKI 72
+ +PD IK+F+GQIPR+++E DL +F ++G++Y + V++DK TG KG++
Sbjct: 1055 QMKEPDAIKLFIGQIPRNLEEKDLKPIFEQFGKIYELTVIKDKYTGMHKGEV 1106
>gi|410921168|ref|XP_003974055.1| PREDICTED: CUGBP Elav-like family member 5-like isoform 4 [Takifugu
rubripes]
Length = 471
Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 37/50 (74%)
Query: 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
D D IK+F+GQIPR+++E DL +F ++G+++ + VL+D+ TG KG F
Sbjct: 74 DQDAIKLFIGQIPRNLEEKDLKPLFEQFGKIHELTVLKDRYTGMHKGCAF 123
>gi|42476252|ref|NP_571569.2| CUGBP Elav-like family member 3 [Danio rerio]
gi|152013393|sp|Q9IBD1.2|CELF3_DANRE RecName: Full=CUGBP Elav-like family member 3; Short=CELF-3;
AltName: Full=Bruno-like protein 1; AltName:
Full=CUG-BP- and ETR-3-like factor 3; AltName:
Full=ELAV-type RNA-binding protein 1; Short=ETR-1;
AltName: Full=RNA-binding protein BRUNOL-1; AltName:
Full=Trinucleotide repeat-containing gene 4 protein
gi|38173873|gb|AAH60923.1| Trinucleotide repeat containing 4 [Danio rerio]
Length = 452
Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 36/48 (75%)
Query: 26 DFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
D IK+F+GQIPR+++E DL +F ++G++Y + V++DK TG KG F
Sbjct: 5 DAIKLFIGQIPRNLEEKDLKPIFEQFGKIYELTVIKDKYTGMHKGCAF 52
Score = 36.6 bits (83), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 29 KMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
K+FVG + + + +AD+ KMF +G + VLR G SKG F
Sbjct: 95 KLFVGMLGKQLSDADVRKMFEPFGSIEECTVLRGP-DGASKGCAF 138
Score = 34.7 bits (78), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 26/45 (57%)
Query: 25 PDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSK 69
P+ +F+ +P+ ++++ +MF +G V + V D+ T QSK
Sbjct: 364 PEGCNIFIYHLPQEFTDSEMLQMFLPFGNVISAKVFVDRATNQSK 408
>gi|7670536|dbj|BAA95118.1| Etr-1 [Danio rerio]
Length = 452
Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 36/48 (75%)
Query: 26 DFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
D IK+F+GQIPR+++E DL +F ++G++Y + V++DK TG KG F
Sbjct: 5 DAIKLFIGQIPRNLEEKDLKPIFEQFGKIYELTVIKDKYTGMHKGCAF 52
Score = 36.6 bits (83), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 29 KMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
K+FVG + + + +AD+ KMF +G + VLR G SKG F
Sbjct: 95 KLFVGMLGKQLSDADVRKMFEPFGSIEECTVLRGP-DGASKGCAF 138
Score = 34.7 bits (78), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 26/45 (57%)
Query: 25 PDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSK 69
P+ +F+ +P+ ++++ +MF +G V + V D+ T QSK
Sbjct: 364 PEGCNIFIYHLPQEFTDSEMLQMFLPFGNVISAKVFVDRATNQSK 408
>gi|432853507|ref|XP_004067741.1| PREDICTED: CUGBP Elav-like family member 5-like isoform 1 [Oryzias
latipes]
Length = 529
Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 37/50 (74%)
Query: 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
D D IK+F+GQIPR+++E DL +F ++G+++ + VL+D+ TG KG F
Sbjct: 73 DQDAIKLFIGQIPRNLEEKDLKPLFEQFGKIHELTVLKDRYTGMHKGCAF 122
Score = 34.3 bits (77), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 25/45 (55%)
Query: 25 PDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSK 69
P+ +F+ +P+ + +L +MF +G V + V D+ T QSK
Sbjct: 441 PEGCNLFIYHLPQEFGDNELMQMFLPFGTVISSKVFMDRATNQSK 485
>gi|149030745|gb|EDL85782.1| similar to trinucleotide repeat containing 4 (predicted), isoform
CRA_b [Rattus norvegicus]
Length = 284
Score = 60.5 bits (145), Expect = 1e-07, Method: Composition-based stats.
Identities = 25/50 (50%), Positives = 37/50 (74%)
Query: 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
+PD IK+FVGQIPR ++E DL +F ++GR++ + V++DK TG KG F
Sbjct: 3 EPDAIKLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAF 52
>gi|195546832|ref|NP_001124260.1| CUGBP Elav-like family member 5 [Danio rerio]
gi|190339155|gb|AAI63416.1| Brunol5 protein [Danio rerio]
Length = 528
Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 37/50 (74%)
Query: 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
D D IK+F+GQIPR+++E DL +F ++G+++ + VL+D+ TG KG F
Sbjct: 74 DQDAIKLFIGQIPRNLEEKDLKPLFEQFGKIHELTVLKDRYTGMHKGCAF 123
Score = 34.3 bits (77), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 25/45 (55%)
Query: 25 PDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSK 69
P+ +F+ +P+ + +L +MF +G V + V D+ T QSK
Sbjct: 440 PEGCNLFIYHLPQEFGDNELMQMFLPFGTVISSKVFMDRATNQSK 484
>gi|410921164|ref|XP_003974053.1| PREDICTED: CUGBP Elav-like family member 5-like isoform 2 [Takifugu
rubripes]
Length = 500
Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 37/50 (74%)
Query: 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
D D IK+F+GQIPR+++E DL +F ++G+++ + VL+D+ TG KG F
Sbjct: 74 DQDAIKLFIGQIPRNLEEKDLKPLFEQFGKIHELTVLKDRYTGMHKGCAF 123
>gi|410921166|ref|XP_003974054.1| PREDICTED: CUGBP Elav-like family member 5-like isoform 3 [Takifugu
rubripes]
Length = 491
Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 37/50 (74%)
Query: 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
D D IK+F+GQIPR+++E DL +F ++G+++ + VL+D+ TG KG F
Sbjct: 74 DQDAIKLFIGQIPRNLEEKDLKPLFEQFGKIHELTVLKDRYTGMHKGCAF 123
>gi|242013079|ref|XP_002427243.1| conserved hypothetical protein [Pediculus humanus corporis]
gi|212511570|gb|EEB14505.1| conserved hypothetical protein [Pediculus humanus corporis]
Length = 129
Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 34/49 (69%)
Query: 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKI 72
DP IK+FVGQIPR ++E DL +F ++G +Y +VLRDK TG K +
Sbjct: 69 DPGIIKLFVGQIPRHLEEDDLRPLFQQFGHIYEFSVLRDKTTGMHKASL 117
>gi|432853509|ref|XP_004067742.1| PREDICTED: CUGBP Elav-like family member 5-like isoform 2 [Oryzias
latipes]
Length = 489
Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 37/50 (74%)
Query: 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
D D IK+F+GQIPR+++E DL +F ++G+++ + VL+D+ TG KG F
Sbjct: 73 DQDAIKLFIGQIPRNLEEKDLKPLFEQFGKIHELTVLKDRYTGMHKGCAF 122
>gi|296213628|ref|XP_002753353.1| PREDICTED: CUGBP Elav-like family member 6 isoform 1 [Callithrix
jacchus]
Length = 481
Score = 60.1 bits (144), Expect = 2e-07, Method: Composition-based stats.
Identities = 27/50 (54%), Positives = 36/50 (72%)
Query: 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
D D IK+FVGQIPR +DE DL +F E+G +Y + VL+D++TG KG F
Sbjct: 42 DHDAIKLFVGQIPRGLDEQDLKPLFEEFGCIYELTVLKDRLTGLHKGCAF 91
Score = 35.0 bits (79), Expect = 5.5, Method: Composition-based stats.
Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 9/63 (14%)
Query: 16 SMSLPEQPD---------PDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTG 66
S + P+QP P+ +F+ +P+ +A+L + F +G V + V D+ T
Sbjct: 375 STAFPQQPSALPQQQREGPEGCNLFIYHLPQEFGDAELIQTFLPFGAVVSAKVFVDRATN 434
Query: 67 QSK 69
QSK
Sbjct: 435 QSK 437
Score = 34.3 bits (77), Expect = 9.5, Method: Composition-based stats.
Identities = 23/63 (36%), Positives = 34/63 (53%), Gaps = 10/63 (15%)
Query: 29 KMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAAFLKI-----ARA 83
K+FVG + + DE D+ ++F +G + VLR G SKG AF+K A+A
Sbjct: 135 KLFVGMLGKQQDEEDVRRLFQPFGHIEECTVLRSP-DGTSKG----CAFVKFGSQGEAQA 189
Query: 84 AIE 86
AI+
Sbjct: 190 AIQ 192
>gi|395729854|ref|XP_002810281.2| PREDICTED: LOW QUALITY PROTEIN: CUGBP Elav-like family member 3
[Pongo abelii]
Length = 478
Score = 60.1 bits (144), Expect = 2e-07, Method: Composition-based stats.
Identities = 25/50 (50%), Positives = 37/50 (74%)
Query: 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
+PD IK+FVGQIPR ++E DL +F ++GR++ + V++DK TG KG F
Sbjct: 3 EPDAIKLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAF 52
>gi|256078409|ref|XP_002575488.1| bruno-like rna binding protein [Schistosoma mansoni]
gi|350645922|emb|CCD59387.1| bruno-like rna binding protein [Schistosoma mansoni]
Length = 230
Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/44 (56%), Positives = 35/44 (79%)
Query: 29 KMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKI 72
K+FVGQIPRSM E DL +F E+G +Y++ +LRDK+TG KG++
Sbjct: 187 KLFVGQIPRSMQENDLRVIFEEFGPIYDLLILRDKITGMHKGEL 230
>gi|298710156|emb|CBJ31866.1| trinucleotide repeat containing 4, isoform CRA_d [Ectocarpus
siliculosus]
Length = 494
Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 37/50 (74%)
Query: 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
D D IK+FVGQIP+ M+E DL +F E+G ++++ V+RDK++G +G F
Sbjct: 40 DSDAIKLFVGQIPKHMEEEDLRPVFEEFGEIFDLAVIRDKISGLHRGCAF 89
Score = 39.3 bits (90), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 28/49 (57%)
Query: 25 PDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
P +F+ +P+ + +ADL F+ +G V + V D+ +G+SKG F
Sbjct: 367 PPGANLFIYHLPQDLSDADLATAFAPFGHVLSAKVYIDRASGESKGFGF 415
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Query: 29 KMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
K+FVG P+S +E ++ +F+ YG + I+V+R++ G +KG F
Sbjct: 132 KLFVGMAPKSANEDEIRAVFAPYGTLREIHVIRNQ-DGTNKGCAF 175
>gi|196475703|gb|ACG76412.1| trinucleotide repeat containing 4 (predicted) [Otolemur
garnettii]
Length = 564
Score = 59.7 bits (143), Expect = 2e-07, Method: Composition-based stats.
Identities = 25/50 (50%), Positives = 37/50 (74%)
Query: 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
+PD IK+FVGQIPR ++E DL +F ++GR++ + V++DK TG KG F
Sbjct: 3 EPDAIKLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAF 52
>gi|194385764|dbj|BAG65257.1| unnamed protein product [Homo sapiens]
Length = 468
Score = 59.7 bits (143), Expect = 2e-07, Method: Composition-based stats.
Identities = 31/63 (49%), Positives = 41/63 (65%), Gaps = 4/63 (6%)
Query: 30 MFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTG--QSKGKIFEAAFLKIARAAIEP 87
MFVGQ+PR+ E DL ++F +YG VY INVLRD+ QSKG F + + +AA+E
Sbjct: 1 MFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTR--KAALEA 58
Query: 88 QKA 90
Q A
Sbjct: 59 QNA 61
>gi|148706790|gb|EDL38737.1| trinucleotide repeat containing 4, isoform CRA_c [Mus musculus]
Length = 567
Score = 59.7 bits (143), Expect = 2e-07, Method: Composition-based stats.
Identities = 25/50 (50%), Positives = 37/50 (74%)
Query: 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
+PD IK+FVGQIPR ++E DL +F ++GR++ + V++DK TG KG F
Sbjct: 76 EPDAIKLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAF 125
Score = 34.3 bits (77), Expect = 9.0, Method: Composition-based stats.
Identities = 14/45 (31%), Positives = 26/45 (57%)
Query: 25 PDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSK 69
PD +F+ +P+ ++++ +MF +G V + V D+ T QSK
Sbjct: 479 PDGCNIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSK 523
>gi|148706791|gb|EDL38738.1| trinucleotide repeat containing 4, isoform CRA_d [Mus musculus]
Length = 538
Score = 59.3 bits (142), Expect = 3e-07, Method: Composition-based stats.
Identities = 25/50 (50%), Positives = 37/50 (74%)
Query: 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
+PD IK+FVGQIPR ++E DL +F ++GR++ + V++DK TG KG F
Sbjct: 76 EPDAIKLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAF 125
Score = 34.3 bits (77), Expect = 9.5, Method: Composition-based stats.
Identities = 14/45 (31%), Positives = 26/45 (57%)
Query: 25 PDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSK 69
PD +F+ +P+ ++++ +MF +G V + V D+ T QSK
Sbjct: 450 PDGCNIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSK 494
>gi|156352255|ref|XP_001622676.1| predicted protein [Nematostella vectensis]
gi|156209270|gb|EDO30576.1| predicted protein [Nematostella vectensis]
Length = 455
Score = 59.3 bits (142), Expect = 3e-07, Method: Composition-based stats.
Identities = 24/50 (48%), Positives = 36/50 (72%)
Query: 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
D + +K+FVGQ+PR+ +E DL +F YG++Y + +L+DK TGQ KG F
Sbjct: 16 DSNSVKLFVGQVPRTWEEKDLRPIFEPYGQIYELTILKDKYTGQHKGCAF 65
Score = 37.4 bits (85), Expect = 1.3, Method: Composition-based stats.
Identities = 17/47 (36%), Positives = 25/47 (53%)
Query: 23 PDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSK 69
P PD +F+ +P+ +ADL + F +G V + V DK T SK
Sbjct: 365 PGPDGSNLFIYHLPQEFTDADLMQTFQPFGTVISAKVFIDKQTNMSK 411
Score = 36.2 bits (82), Expect = 2.8, Method: Composition-based stats.
Identities = 22/53 (41%), Positives = 29/53 (54%), Gaps = 5/53 (9%)
Query: 29 KMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAAFLKIA 81
K+FVG I + E DL MFS +G + + VLR+ SKG AF+K A
Sbjct: 109 KLFVGMISKHAKEEDLRVMFSPFGTIEELTVLRN-ADSTSKG----CAFIKFA 156
>gi|359067200|ref|XP_003586320.1| PREDICTED: CUGBP, Elav-like family member 5 [Bos taurus]
Length = 685
Score = 59.3 bits (142), Expect = 3e-07, Method: Composition-based stats.
Identities = 29/60 (48%), Positives = 38/60 (63%), Gaps = 8/60 (13%)
Query: 18 SLPEQP--------DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSK 69
S PE P D D IK+FVGQIPR++DE DL +F ++GR+Y + VL+D TG K
Sbjct: 153 SGPEPPGGQPDGTKDLDAIKLFVGQIPRNLDEKDLKPLFEQFGRIYELTVLKDPYTGMHK 212
Score = 35.4 bits (80), Expect = 3.9, Method: Composition-based stats.
Identities = 14/45 (31%), Positives = 26/45 (57%)
Query: 25 PDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSK 69
P+ +F+ +P+ + +LT+MF +G + + V D+ T QSK
Sbjct: 597 PEGCNLFIYHLPQEFGDTELTQMFLPFGNIISSKVFMDRATNQSK 641
>gi|326935987|ref|XP_003214043.1| PREDICTED: CUGBP Elav-like family member 3-like, partial
[Meleagris gallopavo]
Length = 48
Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 35/46 (76%)
Query: 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSK 69
+PD IK+FVGQIPR ++E DL +F ++G++Y + V++DK TG K
Sbjct: 3 EPDAIKLFVGQIPRHLEEKDLKPIFEQFGKIYELTVIKDKYTGMHK 48
>gi|3342729|gb|AAC27666.1| R31341_2 [Homo sapiens]
Length = 48
Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/46 (54%), Positives = 33/46 (71%)
Query: 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSK 69
D D IK+FVGQIPR +DE DL +F ++GR+Y + VL+D TG K
Sbjct: 3 DLDAIKLFVGQIPRHLDEKDLKPLFEQFGRIYELTVLKDPYTGMHK 48
>gi|168002776|ref|XP_001754089.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162694643|gb|EDQ80990.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 429
Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 36/48 (75%)
Query: 26 DFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
D +K+FVGQ+P+ M E L ++FSE G V+ IN+++DK+T QS+G F
Sbjct: 14 DSVKLFVGQLPKQMSEQQLVEVFSEAGTVHEINIIKDKLTKQSRGCCF 61
Score = 36.2 bits (82), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 35/63 (55%), Gaps = 10/63 (15%)
Query: 29 KMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAAFLKI-----ARA 83
K+F+G +P+ +AD+ +FS YG + ++V++ SKG AFLK A A
Sbjct: 105 KLFIGMLPKGASKADVMAVFSPYGSIKELSVIKGS-QPTSKG----CAFLKYETKEQAIA 159
Query: 84 AIE 86
AIE
Sbjct: 160 AIE 162
>gi|270016797|gb|EFA13243.1| hypothetical protein TcasGA2_TC001513 [Tribolium castaneum]
Length = 355
Score = 58.9 bits (141), Expect = 3e-07, Method: Composition-based stats.
Identities = 25/44 (56%), Positives = 32/44 (72%)
Query: 26 DFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSK 69
D IK+FVGQIPR ++E DL MF E+G++Y VL+DK TG K
Sbjct: 156 DVIKLFVGQIPRHLEEDDLRPMFEEFGKIYEFTVLKDKYTGMHK 199
>gi|332017365|gb|EGI58107.1| CUG-BP- and ETR-3-like factor 5 [Acromyrmex echinatior]
Length = 103
Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 25/45 (55%), Positives = 33/45 (73%)
Query: 28 IKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKI 72
IK+FVGQIPR ++E L MF E+G++Y VL+DK TG KGK+
Sbjct: 18 IKLFVGQIPRHLEEDALRPMFEEFGKIYEFTVLKDKYTGIHKGKV 62
>gi|156368353|ref|XP_001627659.1| predicted protein [Nematostella vectensis]
gi|156214575|gb|EDO35559.1| predicted protein [Nematostella vectensis]
Length = 383
Score = 58.9 bits (141), Expect = 4e-07, Method: Composition-based stats.
Identities = 23/47 (48%), Positives = 35/47 (74%)
Query: 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKG 70
D + +K+FVGQ+PR+ +E DL +F YG++Y + +L+DK TGQ KG
Sbjct: 16 DSNSVKLFVGQVPRTWEEKDLRPIFEPYGQIYELTILKDKYTGQHKG 62
Score = 39.3 bits (90), Expect = 0.30, Method: Composition-based stats.
Identities = 18/57 (31%), Positives = 30/57 (52%)
Query: 13 YVRSMSLPEQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSK 69
Y ++ P++ PD +F+ +P+ +ADL + F +G V + V DK T SK
Sbjct: 283 YQQTARQPQKEGPDGSNLFIYHLPQEFTDADLMQTFQPFGTVISAKVFIDKQTNMSK 339
Score = 37.4 bits (85), Expect = 1.1, Method: Composition-based stats.
Identities = 24/59 (40%), Positives = 31/59 (52%), Gaps = 5/59 (8%)
Query: 23 PDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAAFLKIA 81
P D K+FVG I + E DL MFS +G + + VLR+ SKG AF+K A
Sbjct: 80 PGMDDRKLFVGMISKHAKEEDLRVMFSPFGTIEELTVLRN-ADSTSKG----CAFIKFA 133
>gi|393906351|gb|EJD74254.1| HrETR-1 protein [Loa loa]
Length = 507
Score = 58.9 bits (141), Expect = 4e-07, Method: Composition-based stats.
Identities = 25/50 (50%), Positives = 35/50 (70%)
Query: 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
D D IK+FVGQIPR+++E DL +F +G++Y +L+DK TG KG F
Sbjct: 40 DADTIKLFVGQIPRNLEEKDLRHLFETFGKIYEFTILKDKYTGLHKGCAF 89
>gi|324505949|gb|ADY42547.1| CUGBP Elav family member 4 [Ascaris suum]
Length = 476
Score = 58.9 bits (141), Expect = 4e-07, Method: Composition-based stats.
Identities = 25/50 (50%), Positives = 35/50 (70%)
Query: 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
D D IK+FVGQIPR+++E DL +F +G++Y +L+DK TG KG F
Sbjct: 29 DSDAIKLFVGQIPRNLEEKDLRHLFESFGKIYEFTILKDKYTGLHKGCAF 78
Score = 35.4 bits (80), Expect = 4.1, Method: Composition-based stats.
Identities = 15/45 (33%), Positives = 26/45 (57%)
Query: 25 PDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSK 69
P+ +F+ +P+ +A+L +MF +G V + V D+ T QSK
Sbjct: 390 PEGCNLFIYHLPQEFGDAELMQMFMPFGHVISAKVFIDRATNQSK 434
>gi|324501916|gb|ADY40847.1| CUGBP Elav family member 4 [Ascaris suum]
Length = 501
Score = 58.9 bits (141), Expect = 4e-07, Method: Composition-based stats.
Identities = 25/50 (50%), Positives = 35/50 (70%)
Query: 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
D D IK+FVGQIPR+++E DL +F +G++Y +L+DK TG KG F
Sbjct: 29 DSDAIKLFVGQIPRNLEEKDLRHLFESFGKIYEFTILKDKYTGLHKGCAF 78
Score = 35.4 bits (80), Expect = 4.3, Method: Composition-based stats.
Identities = 15/45 (33%), Positives = 26/45 (57%)
Query: 25 PDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSK 69
P+ +F+ +P+ +A+L +MF +G V + V D+ T QSK
Sbjct: 415 PEGCNLFIYHLPQEFGDAELMQMFMPFGHVISAKVFIDRATNQSK 459
>gi|302786984|ref|XP_002975262.1| hypothetical protein SELMODRAFT_442777 [Selaginella
moellendorffii]
gi|300156836|gb|EFJ23463.1| hypothetical protein SELMODRAFT_442777 [Selaginella
moellendorffii]
Length = 427
Score = 57.4 bits (137), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 36/49 (73%)
Query: 25 PDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
PD +K+FVGQIP+ + + +L +F E G V++IN+++DK T QS+G F
Sbjct: 8 PDAVKLFVGQIPKHLTQEELLPIFEEAGAVFDINIIKDKSTKQSRGCCF 56
Score = 38.1 bits (87), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 25/33 (75%)
Query: 29 KMFVGQIPRSMDEADLTKMFSEYGRVYNINVLR 61
K+F+G +P+S+ EA++ +FSEYG + + V++
Sbjct: 100 KLFIGMLPKSVTEAEVRDVFSEYGNIKELQVIK 132
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 26/50 (52%)
Query: 20 PEQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSK 69
P+ P +F+ IP +++L+ F+ +G V + V DK TG SK
Sbjct: 334 PQAEGPPGANLFIYHIPAEFGDSELSTAFASFGNVISAKVFVDKTTGISK 383
>gi|302811484|ref|XP_002987431.1| hypothetical protein SELMODRAFT_269263 [Selaginella
moellendorffii]
gi|300144837|gb|EFJ11518.1| hypothetical protein SELMODRAFT_269263 [Selaginella
moellendorffii]
Length = 428
Score = 57.4 bits (137), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 36/49 (73%)
Query: 25 PDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
PD +K+FVGQIP+ + + +L +F E G V++IN+++DK T QS+G F
Sbjct: 8 PDAVKLFVGQIPKHLTQEELLPIFEEAGAVFDINIIKDKSTKQSRGCCF 56
Score = 38.1 bits (87), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 25/33 (75%)
Query: 29 KMFVGQIPRSMDEADLTKMFSEYGRVYNINVLR 61
K+F+G +P+S+ EA++ +FSEYG + + V++
Sbjct: 100 KLFIGMLPKSVTEAEVRDVFSEYGNIKELQVIK 132
Score = 37.0 bits (84), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 26/50 (52%)
Query: 20 PEQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSK 69
P+ P +F+ IP +++L+ F+ +G V + V DK TG SK
Sbjct: 335 PQAEGPPGANLFIYHIPAEFGDSELSTAFASFGNVISAKVFVDKTTGISK 384
>gi|410921162|ref|XP_003974052.1| PREDICTED: CUGBP Elav-like family member 5-like isoform 1 [Takifugu
rubripes]
Length = 528
Score = 57.4 bits (137), Expect = 1e-06, Method: Composition-based stats.
Identities = 23/50 (46%), Positives = 37/50 (74%)
Query: 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
D D IK+F+GQIPR+++E DL +F ++G+++ + VL+D+ TG KG F
Sbjct: 74 DQDAIKLFIGQIPRNLEEKDLKPLFEQFGKIHELTVLKDRYTGMHKGCAF 123
>gi|348527714|ref|XP_003451364.1| PREDICTED: CUGBP Elav-like family member 5-like [Oreochromis
niloticus]
Length = 529
Score = 57.4 bits (137), Expect = 1e-06, Method: Composition-based stats.
Identities = 23/50 (46%), Positives = 37/50 (74%)
Query: 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
D D IK+F+GQIPR+++E DL +F ++G+++ + VL+D+ TG KG F
Sbjct: 74 DQDAIKLFIGQIPRNLEEKDLKPLFEQFGKIHELTVLKDRYTGMHKGCAF 123
>gi|47215641|emb|CAG01358.1| unnamed protein product [Tetraodon nigroviridis]
Length = 204
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 35/46 (76%)
Query: 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSK 69
D D IK+F+GQIPR+++E DL +F ++G+++ + VL+D+ TG K
Sbjct: 74 DQDAIKLFIGQIPRNLEEKDLKPLFEQFGKIHELTVLKDRYTGMHK 119
>gi|208022666|ref|NP_001129075.1| CUG-BP- and ETR-3-like factor 5 [Rattus norvegicus]
Length = 395
Score = 56.6 bits (135), Expect = 2e-06, Method: Composition-based stats.
Identities = 26/50 (52%), Positives = 34/50 (68%)
Query: 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
D D IK+FVGQIPR + E DL +F ++GR+Y + VL+D TG KG F
Sbjct: 3 DLDAIKLFVGQIPRHLHEQDLKPLFEQFGRIYELTVLKDPHTGVHKGCAF 52
>gi|189339278|ref|NP_795928.2| CUG-BP- and ETR-3-like factor 5 [Mus musculus]
Length = 395
Score = 56.6 bits (135), Expect = 2e-06, Method: Composition-based stats.
Identities = 26/50 (52%), Positives = 34/50 (68%)
Query: 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
D D IK+FVGQIPR + E DL +F ++GR+Y + VL+D TG KG F
Sbjct: 3 DLDAIKLFVGQIPRHLHEQDLKPLFEQFGRIYELTVLKDPHTGVHKGCAF 52
>gi|326426729|gb|EGD72299.1| napor protein short isoform [Salpingoeca sp. ATCC 50818]
Length = 353
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 39/56 (69%)
Query: 18 SLPEQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
++P D D IK+FVGQ+P+S E LT + YG ++++ +L++K+TG+S+G F
Sbjct: 13 TMPPPKDEDAIKLFVGQLPKSYGEEQLTALLQPYGAIHDMMILKNKMTGESRGCAF 68
Score = 41.2 bits (95), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 32/56 (57%), Gaps = 5/56 (8%)
Query: 29 KMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAAFLKIARAA 84
K+FVG I ++ EADL MF +G + ++NVL GQSKG AF+K A
Sbjct: 112 KLFVGMISKTCTEADLEAMFRPFGEIESVNVLIGP-EGQSKG----CAFVKYTNAG 162
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 29/57 (50%)
Query: 13 YVRSMSLPEQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSK 69
Y + P++ P +F+ +P+ +++ L F +G V + V DK TGQSK
Sbjct: 255 YGGAARAPQKEGPPNSNLFIYHLPQELNDHSLAATFMSFGNVISSKVFVDKYTGQSK 311
>gi|363744097|ref|XP_003642972.1| PREDICTED: CUGBP, Elav-like family member 4 [Gallus gallus]
Length = 495
Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 32/41 (78%)
Query: 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKV 64
D D IK+F+GQIPR++DE DL +F E+G++Y + VL+D+
Sbjct: 48 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRA 88
Score = 36.2 bits (82), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 26/45 (57%)
Query: 25 PDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSK 69
P+ +F+ +P+ +A+L +MF +G V + V D+ T QSK
Sbjct: 407 PEGCNLFIYHLPQEFGDAELMQMFLPFGNVISSKVFVDRATNQSK 451
>gi|363744095|ref|XP_003642971.1| PREDICTED: CUGBP, Elav-like family member 4 [Gallus gallus]
Length = 496
Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 32/41 (78%)
Query: 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKV 64
D D IK+F+GQIPR++DE DL +F E+G++Y + VL+D+
Sbjct: 48 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRA 88
Score = 36.2 bits (82), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 26/45 (57%)
Query: 25 PDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSK 69
P+ +F+ +P+ +A+L +MF +G V + V D+ T QSK
Sbjct: 408 PEGCNLFIYHLPQEFGDAELMQMFLPFGNVISSKVFVDRATNQSK 452
>gi|410052930|ref|XP_003953367.1| PREDICTED: LOW QUALITY PROTEIN: CUGBP Elav-like family member 5
[Pan troglodytes]
Length = 484
Score = 56.2 bits (134), Expect = 2e-06, Method: Composition-based stats.
Identities = 29/61 (47%), Positives = 37/61 (60%), Gaps = 8/61 (13%)
Query: 18 SLPEQP--------DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSK 69
S PE P D D IK+FVGQIPR +DE DL +F ++GR++ VL+D TG K
Sbjct: 27 SGPEPPGGQPDGMKDLDAIKLFVGQIPRHLDEKDLKPLFEQFGRIHENAVLKDPYTGMHK 86
Query: 70 G 70
G
Sbjct: 87 G 87
Score = 35.4 bits (80), Expect = 4.4, Method: Composition-based stats.
Identities = 14/45 (31%), Positives = 26/45 (57%)
Query: 25 PDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSK 69
P+ +F+ +P+ + +LT+MF +G + + V D+ T QSK
Sbjct: 396 PEGCNLFIYHLPQEFGDTELTQMFLPFGNIISSKVFMDRATNQSK 440
>gi|196018164|ref|XP_002118752.1| hypothetical protein TRIADDRAFT_9318 [Trichoplax adhaerens]
gi|190578300|gb|EDV18762.1| hypothetical protein TRIADDRAFT_9318 [Trichoplax adhaerens]
Length = 89
Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 33/50 (66%)
Query: 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
D D IK+FVGQ+PR E DL +F ++G +Y + V++D+ T Q KG F
Sbjct: 14 DKDAIKLFVGQLPRDCTEEDLHSLFDQFGPIYELAVIKDRTTKQHKGCAF 63
>gi|321474055|gb|EFX85021.1| hypothetical protein DAPPUDRAFT_194198 [Daphnia pulex]
Length = 247
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 34/48 (70%)
Query: 26 DFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
D +F+G +P + E D+ +FS+YG V NIN++RDKVTG+SKG F
Sbjct: 34 DSAWIFIGGLPYELSEGDIICIFSQYGEVANINLVRDKVTGKSKGFCF 81
>gi|383862523|ref|XP_003706733.1| PREDICTED: 30S ribosomal protein 2, chloroplastic-like [Megachile
rotundata]
Length = 117
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/44 (54%), Positives = 32/44 (72%)
Query: 28 IKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGK 71
IK+FVGQIPR ++E L MF E+G++Y VL+DK TG KG+
Sbjct: 18 IKLFVGQIPRHLEEDALRPMFEEFGKIYEFTVLKDKYTGMHKGE 61
>gi|147772817|emb|CAN71673.1| hypothetical protein VITISV_044358 [Vitis vinifera]
Length = 450
Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 35/54 (64%)
Query: 20 PEQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
P + D +K+FVGQ+P++M EA L MF E+ V +N+++DK T S+G F
Sbjct: 7 PRKASEDSVKLFVGQVPKNMTEAQLLAMFKEFALVDEVNIIKDKATRASRGCCF 60
Score = 41.6 bits (96), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 49/93 (52%), Gaps = 21/93 (22%)
Query: 3 REKRRECTYEYVR---------SMSLPEQ---PDPDF----IKMFVGQIPRSMDEADLTK 46
++R++CT E+ S S P Q D + K+FVG +P+++ EA+++
Sbjct: 116 NQQRKKCTREHTNFGLRLAFQVSASSPLQVKYADGELERLEHKLFVGMLPKNVSEAEVSS 175
Query: 47 MFSEYGRVYNINVLRDKVTGQSKGKIFEAAFLK 79
+FS+YG + ++ +LR SKG AFLK
Sbjct: 176 LFSKYGTIKDLQILRGSQQ-TSKG----CAFLK 203
Score = 37.7 bits (86), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 24/45 (53%)
Query: 25 PDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSK 69
P +F+ IP+ + +L F ++GRV + V DK TG SK
Sbjct: 402 PPGANLFIYHIPQEFGDHELAHAFQQFGRVLSAKVFVDKATGASK 446
>gi|67611128|ref|XP_667137.1| RNA binding protein [Cryptosporidium hominis TU502]
gi|54658240|gb|EAL36907.1| RNA binding protein [Cryptosporidium hominis]
Length = 903
Score = 55.1 bits (131), Expect = 5e-06, Method: Composition-based stats.
Identities = 24/49 (48%), Positives = 37/49 (75%), Gaps = 1/49 (2%)
Query: 23 PDPDF-IKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKG 70
P P+ IK+FVG++PR+++E DL +F YGRV N++V+R+K TG +G
Sbjct: 299 PAPNVEIKLFVGRVPRNIEEDDLRDLFKLYGRVVNVSVIREKSTGIHRG 347
Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 22/59 (37%), Positives = 38/59 (64%), Gaps = 4/59 (6%)
Query: 23 PDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAAFLKIA 81
P D +K+FVG +PR++ E ++ ++FS YG++ I ++R+ +G KG AF+K A
Sbjct: 400 PGVDQVKLFVGALPRNITEDEIRELFSPYGQINEIFIMREPHSGVGKG----CAFVKYA 454
>gi|225436819|ref|XP_002270390.1| PREDICTED: CUGBP Elav-like family member 5 isoform 1 [Vitis
vinifera]
gi|296086641|emb|CBI32276.3| unnamed protein product [Vitis vinifera]
Length = 437
Score = 54.7 bits (130), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 35/54 (64%)
Query: 20 PEQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
P + D +K+FVGQ+P++M EA L MF E+ V +N+++DK T S+G F
Sbjct: 7 PRKASEDSVKLFVGQVPKNMTEAQLLAMFKEFALVDEVNIIKDKATRASRGCCF 60
Score = 41.2 bits (95), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 39/63 (61%), Gaps = 10/63 (15%)
Query: 29 KMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAAFLKI-----ARA 83
K+FVG +P+++ EA+++ +FS+YG + ++ +LR SKG AFLK A A
Sbjct: 104 KLFVGMLPKNVSEAEVSSLFSKYGTIKDLQILRGSQQ-TSKG----CAFLKYETKEQALA 158
Query: 84 AIE 86
A+E
Sbjct: 159 ALE 161
Score = 37.7 bits (86), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 24/45 (53%)
Query: 25 PDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSK 69
P +F+ IP+ + +L F ++GRV + V DK TG SK
Sbjct: 348 PPGANLFIYHIPQEFGDHELAHAFQQFGRVLSAKVFVDKATGASK 392
>gi|359479768|ref|XP_003632354.1| PREDICTED: CUGBP Elav-like family member 5 isoform 2 [Vitis
vinifera]
Length = 447
Score = 54.7 bits (130), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 35/54 (64%)
Query: 20 PEQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
P + D +K+FVGQ+P++M EA L MF E+ V +N+++DK T S+G F
Sbjct: 7 PRKASEDSVKLFVGQVPKNMTEAQLLAMFKEFALVDEVNIIKDKATRASRGCCF 60
Score = 41.2 bits (95), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 39/63 (61%), Gaps = 10/63 (15%)
Query: 29 KMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAAFLKI-----ARA 83
K+FVG +P+++ EA+++ +FS+YG + ++ +LR SKG AFLK A A
Sbjct: 114 KLFVGMLPKNVSEAEVSSLFSKYGTIKDLQILRGSQQ-TSKG----CAFLKYETKEQALA 168
Query: 84 AIE 86
A+E
Sbjct: 169 ALE 171
Score = 37.7 bits (86), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 24/45 (53%)
Query: 25 PDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSK 69
P +F+ IP+ + +L F ++GRV + V DK TG SK
Sbjct: 358 PPGANLFIYHIPQEFGDHELAHAFQQFGRVLSAKVFVDKATGASK 402
>gi|198431449|ref|XP_002130974.1| PREDICTED: similar to HrETR-1 [Ciona intestinalis]
Length = 538
Score = 54.7 bits (130), Expect = 6e-06, Method: Composition-based stats.
Identities = 25/60 (41%), Positives = 41/60 (68%), Gaps = 2/60 (3%)
Query: 16 SMSLPEQP--DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
S L E P D D +K+F+GQ+P++ +E +L ++F+ +G ++ ++VLRDK TG KG F
Sbjct: 61 SHPLKETPEKDDDAVKLFIGQVPKNWEEKELRQVFAPFGEIFELSVLRDKYTGMHKGCAF 120
Score = 41.2 bits (95), Expect = 0.069, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 30/54 (55%)
Query: 16 SMSLPEQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSK 69
S + P++ PD +F+ +P+ +ADL +F +G V + V D+ T QSK
Sbjct: 441 STNAPQKEGPDGCNLFIYHLPQEFSDADLANVFQPFGNVISAKVFIDRATNQSK 494
>gi|126649123|ref|XP_001388078.1| RNA binding protein [Cryptosporidium parvum Iowa II]
gi|126117166|gb|EAZ51266.1| RNA binding protein, putative [Cryptosporidium parvum Iowa II]
Length = 906
Score = 54.7 bits (130), Expect = 7e-06, Method: Composition-based stats.
Identities = 24/49 (48%), Positives = 37/49 (75%), Gaps = 1/49 (2%)
Query: 23 PDPDF-IKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKG 70
P P+ IK+FVG++PR+++E DL +F YGRV N++V+R+K TG +G
Sbjct: 300 PAPNVEIKLFVGRVPRNIEEDDLRDLFKLYGRVVNVSVIREKSTGIHRG 348
Score = 45.4 bits (106), Expect = 0.004, Method: Composition-based stats.
Identities = 22/59 (37%), Positives = 38/59 (64%), Gaps = 4/59 (6%)
Query: 23 PDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAAFLKIA 81
P D +K+FVG +PR++ E ++ ++FS YG++ I ++R+ +G KG AF+K A
Sbjct: 401 PGVDQVKLFVGALPRNIIEDEIRELFSPYGQINEIFIMREPHSGVGKG----CAFVKYA 455
>gi|196012894|ref|XP_002116309.1| hypothetical protein TRIADDRAFT_60275 [Trichoplax adhaerens]
gi|190581264|gb|EDV21342.1| hypothetical protein TRIADDRAFT_60275 [Trichoplax adhaerens]
Length = 456
Score = 54.7 bits (130), Expect = 7e-06, Method: Composition-based stats.
Identities = 23/50 (46%), Positives = 33/50 (66%)
Query: 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
D D IK+FVGQ+PR E DL +F ++G +Y + V++D+ T Q KG F
Sbjct: 31 DKDAIKLFVGQLPRDCTEEDLHSLFDQFGPIYELAVIKDRTTKQHKGCAF 80
Score = 37.4 bits (85), Expect = 1.1, Method: Composition-based stats.
Identities = 18/42 (42%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Query: 29 KMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKG 70
K+FVG + + DE +L MFS YG + + +LR + G SKG
Sbjct: 123 KLFVGMLGKLDDENELKSMFSPYGSIEEVTILR-AIDGSSKG 163
>gi|307175864|gb|EFN65679.1| CUG-BP- and ETR-3-like factor 5 [Camponotus floridanus]
Length = 132
Score = 54.3 bits (129), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 23/42 (54%), Positives = 30/42 (71%)
Query: 28 IKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSK 69
IK+FVGQIPR ++E L MF E+G++Y VL+DK TG K
Sbjct: 18 IKLFVGQIPRHLEEDALRPMFEEFGKIYEFTVLKDKYTGLHK 59
>gi|168043683|ref|XP_001774313.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162674305|gb|EDQ60815.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 414
Score = 54.3 bits (129), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 34/48 (70%)
Query: 26 DFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
D +K+FVGQ+P+ M E L ++FSE G V IN+++DK+T S+G F
Sbjct: 14 DSVKLFVGQLPKQMSEQQLVEIFSEAGTVNEINIIKDKLTKLSRGCCF 61
Score = 39.7 bits (91), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 38/63 (60%), Gaps = 10/63 (15%)
Query: 29 KMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAAFLKI-----ARA 83
K+F+G +P++ +AD+T +FS+YG + ++V++ SKG AFLK A A
Sbjct: 105 KLFIGMLPKAASKADVTAVFSQYGTIKELSVIKGSQP-TSKG----CAFLKYETKEQAVA 159
Query: 84 AIE 86
AIE
Sbjct: 160 AIE 162
Score = 38.5 bits (88), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 28/56 (50%)
Query: 14 VRSMSLPEQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSK 69
VR+ P+ P +F+ IP + +L+ FS +G V + V DK TG SK
Sbjct: 315 VRTSVGPQTEGPAGANLFIYHIPPEFGDDELSTAFSSFGNVISAKVFVDKTTGASK 370
>gi|209878013|ref|XP_002140448.1| RNA recognition motif. family protein [Cryptosporidium muris RN66]
gi|209556054|gb|EEA06099.1| RNA recognition motif. family protein [Cryptosporidium muris RN66]
Length = 546
Score = 53.9 bits (128), Expect = 1e-05, Method: Composition-based stats.
Identities = 24/50 (48%), Positives = 37/50 (74%), Gaps = 1/50 (2%)
Query: 22 QPDPDF-IKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKG 70
P P+ IK+FVG+IPR+++E +L K+F YG V NI+++R+K TG +G
Sbjct: 103 HPAPNMEIKLFVGRIPRNIEEDELKKLFELYGNVVNISIVREKNTGIHRG 152
Score = 44.7 bits (104), Expect = 0.007, Method: Composition-based stats.
Identities = 21/59 (35%), Positives = 38/59 (64%), Gaps = 4/59 (6%)
Query: 23 PDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAAFLKIA 81
P D +K+FVG +P+++ E +++ +FS YG++ I ++R+ TG +G AF+K A
Sbjct: 205 PGVDQVKLFVGALPKNITEEEISDVFSPYGQINEIFIMREIHTGFCRG----CAFVKYA 259
>gi|358340717|dbj|GAA48556.1| CUG-BP- and ETR3-like factor [Clonorchis sinensis]
Length = 223
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 41/71 (57%), Gaps = 7/71 (9%)
Query: 10 TYEYVRSMSLPEQPDPDFI-------KMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRD 62
T +Y S L +Q + + K+F+GQIPRSM E D+ + +G +Y++ +LRD
Sbjct: 87 TNDYATSEELDQQSPTNILRWNYRHTKLFIGQIPRSMQEDDVRLVLEPFGPIYDLLILRD 146
Query: 63 KVTGQSKGKIF 73
K+TG KG F
Sbjct: 147 KLTGMHKGCAF 157
>gi|157129340|ref|XP_001655377.1| RNA-binding protein, putative [Aedes aegypti]
gi|108882112|gb|EAT46337.1| AAEL002461-PA [Aedes aegypti]
Length = 138
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 33/48 (68%)
Query: 26 DFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
D +FVG +P + E DL +FS+YG + NIN++RDK TG+SKG F
Sbjct: 32 DSAWIFVGGLPSELTEGDLLAVFSQYGEIVNINLVRDKKTGKSKGFSF 79
>gi|340727255|ref|XP_003401963.1| PREDICTED: RNA-binding motif protein, X-linked 2-like [Bombus
terrestris]
Length = 139
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 38/59 (64%), Gaps = 1/59 (1%)
Query: 15 RSMSLPEQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
RS+S +Q D +F+G +P + E D+ +FS+YG V NIN++RDK TG+ KG F
Sbjct: 22 RSISWHDQY-GDSAWIFIGGLPYDLTEGDVITVFSQYGEVVNINLIRDKNTGKQKGYGF 79
>gi|148907319|gb|ABR16796.1| unknown [Picea sitchensis]
Length = 387
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 45/67 (67%), Gaps = 1/67 (1%)
Query: 21 EQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF-EAAFLK 79
E+ P K++VG +PRS D A LT++F E+G V ++ V+R++ TG S+G F + +K
Sbjct: 87 EELPPRRTKLYVGNLPRSCDIAQLTQLFQEFGTVESVEVVRNEETGISRGFAFVTMSTVK 146
Query: 80 IARAAIE 86
A++AIE
Sbjct: 147 EAKSAIE 153
>gi|13537210|dbj|BAB40781.1| HrETR-1 [Halocynthia roretzi]
Length = 594
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 25/65 (38%), Positives = 38/65 (58%)
Query: 9 CTYEYVRSMSLPEQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQS 68
C+ SM + D D +K+F+GQ+P++ E +L +F YG +Y ++VL DK TG
Sbjct: 84 CSTPSNVSMKEFQDKDDDAVKLFIGQVPKNWTEHELRPIFEPYGEIYELSVLHDKYTGMH 143
Query: 69 KGKIF 73
KG F
Sbjct: 144 KGCAF 148
Score = 40.4 bits (93), Expect = 0.12, Method: Composition-based stats.
Identities = 18/56 (32%), Positives = 31/56 (55%)
Query: 14 VRSMSLPEQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSK 69
V S + P++ P+ +F+ +P+ +ADL +F +G V + V D+ T QSK
Sbjct: 495 VNSPTAPQKEGPEGCNLFIYHLPQEFTDADLANVFQPFGNVISAKVFIDRATNQSK 550
Score = 35.0 bits (79), Expect = 5.8, Method: Composition-based stats.
Identities = 22/63 (34%), Positives = 36/63 (57%), Gaps = 10/63 (15%)
Query: 29 KMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAAFLKI-----ARA 83
K+FVG + + E D+ ++F ++G + +LR GQSKG +F+K+ ARA
Sbjct: 192 KLFVGMLGKRQTEEDIRQLFEKFGHIEECTILRTP-DGQSKG----CSFVKLSTSTGARA 246
Query: 84 AIE 86
AI+
Sbjct: 247 AID 249
>gi|168041276|ref|XP_001773118.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162675665|gb|EDQ62158.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 203
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 36/55 (65%)
Query: 19 LPEQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
+ + D F+K+FVG +PR++ E ++ MF+E+G V + +++DK TG +G F
Sbjct: 7 IADTTDGSFVKLFVGSVPRTITEDEVRPMFAEHGNVLEVAIIKDKRTGNQQGCCF 61
Score = 34.7 bits (78), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 29 KMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
K+FVG + + E ++ ++F YGRV ++ ++RD+ QS+G F
Sbjct: 108 KLFVGSLNKQASEKEIEELFIPYGRVDDVYIMRDE-QKQSRGCAF 151
>gi|74227727|dbj|BAE35704.1| unnamed protein product [Mus musculus]
Length = 165
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 32/44 (72%)
Query: 30 MFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
+FVG +P + E D+ +FS+YG + NIN++RDK TG+SKG F
Sbjct: 38 IFVGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCF 81
>gi|126324405|ref|XP_001377748.1| PREDICTED: RNA-binding motif protein, X-linked 2-like
[Monodelphis domestica]
Length = 171
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 33/48 (68%)
Query: 26 DFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
D +FVG +P + E D+ +FS+YG + NIN++RDK TG+SKG F
Sbjct: 34 DSAWVFVGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCF 81
>gi|156550434|ref|XP_001600557.1| PREDICTED: glucose dehydrogenase [acceptor]-like [Nasonia
vitripennis]
Length = 673
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 21/43 (48%), Positives = 31/43 (72%)
Query: 28 IKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKG 70
+K+FVGQIPR+++E L +F E+G++Y VL+DK TG K
Sbjct: 27 VKLFVGQIPRNLEENALRPIFEEFGKIYEFTVLKDKYTGMHKA 69
>gi|195433960|ref|XP_002064974.1| GK14925 [Drosophila willistoni]
gi|194161059|gb|EDW75960.1| GK14925 [Drosophila willistoni]
Length = 158
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 32/48 (66%)
Query: 26 DFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
D +FVG P ++ E DL +FS+YG V NIN++RD TG+SKG F
Sbjct: 33 DSAWIFVGGFPYTLTEGDLVCVFSQYGEVVNINLVRDSKTGKSKGFCF 80
>gi|350423156|ref|XP_003493401.1| PREDICTED: RNA-binding motif protein, X-linked 2-like [Bombus
impatiens]
Length = 139
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 37/59 (62%), Gaps = 1/59 (1%)
Query: 15 RSMSLPEQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
RS S +Q D +F+G +P + E D+ +FS+YG V NIN++RDK TG+ KG F
Sbjct: 22 RSTSWHDQY-GDSAWIFIGGLPYDLTEGDVITVFSQYGEVVNINLIRDKNTGKQKGYGF 79
>gi|390352150|ref|XP_791635.3| PREDICTED: RNA-binding motif protein, X-linked 2-like
[Strongylocentrotus purpuratus]
Length = 232
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 38/62 (61%)
Query: 14 VRSMSLPEQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
V S + Q D +F+G +P + E D+ +FS+YG + NIN++RDK TG+SKG F
Sbjct: 48 VSSTASWHQQYKDSAYIFIGGMPFELTEGDVLCVFSQYGEIVNINLVRDKKTGKSKGYCF 107
Query: 74 EA 75
A
Sbjct: 108 IA 109
>gi|410989439|ref|XP_004000969.1| PREDICTED: RNA-binding motif protein, X-linked 2 [Felis catus]
Length = 507
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 33/48 (68%)
Query: 26 DFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
D +F+G +P + E D+ +FS+YG + NIN++RDK TG+SKG F
Sbjct: 215 DSAWIFLGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCF 262
>gi|320167253|gb|EFW44152.1| RNA binding protein [Capsaspora owczarzaki ATCC 30864]
Length = 461
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 33/48 (68%)
Query: 26 DFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
+ +K+FVGQ+PR+M+E DL +F E+G V + +L+D+ G KG F
Sbjct: 47 EHVKLFVGQVPRTMEEKDLRPVFEEFGPVVELTILKDRFNGLHKGCAF 94
Score = 36.6 bits (83), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Query: 29 KMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
K+F+G I R+ E +L K+F YG + +I VLR + G SKG F
Sbjct: 138 KLFLGMISRTASEDELRKVFEMYGDIEDIAVLR-QPDGTSKGCAF 181
>gi|449462310|ref|XP_004148884.1| PREDICTED: CUGBP Elav-like family member 2-like [Cucumis sativus]
gi|449491521|ref|XP_004158924.1| PREDICTED: CUGBP Elav-like family member 2-like [Cucumis sativus]
Length = 438
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 33/53 (62%)
Query: 21 EQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
Q + D +K+FVGQ+P+ M E L MF E+ V +N++RDK T S+G F
Sbjct: 15 NQEEEDSVKLFVGQVPKHMTEPQLLTMFQEFALVDEVNIIRDKTTRASRGCCF 67
Score = 38.1 bits (87), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 38/63 (60%), Gaps = 10/63 (15%)
Query: 29 KMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAAFLKI-----ARA 83
K+F+G +P+++ E +++ +FS+YG + ++ +LR SKG AFLK A A
Sbjct: 111 KLFIGMLPKNVSEDEVSGLFSQYGTIKDLQILRGSQQ-TSKG----CAFLKYETKDQAVA 165
Query: 84 AIE 86
A+E
Sbjct: 166 ALE 168
>gi|357611289|gb|EHJ67406.1| RNA binding motif protein X-linked 2 [Danaus plexippus]
Length = 185
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 33/48 (68%)
Query: 26 DFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
D +FVG +P + E D+ +FS+YG + NIN++RDK TG+SKG F
Sbjct: 32 DSAWIFVGGLPYDLTEGDVICVFSQYGEIVNINLVRDKDTGRSKGFAF 79
>gi|223996717|ref|XP_002288032.1| ribonuceoprotein [Thalassiosira pseudonana CCMP1335]
gi|220977148|gb|EED95475.1| ribonuceoprotein [Thalassiosira pseudonana CCMP1335]
Length = 356
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 33/46 (71%)
Query: 28 IKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
+K+FVGQ+P+++ E DL +F YGR+ ++ V+RD+ TG +G F
Sbjct: 2 LKLFVGQVPKTLAEEDLALLFEPYGRILDMTVIRDRRTGTHRGCAF 47
Score = 38.1 bits (87), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Query: 17 MSLPEQP--DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
+ +P +P P +F+ +P + +ADL F+ +G V + V D+ TG+SKG F
Sbjct: 266 LMVPARPREGPAGANLFIYHLPIDLTDADLATAFNPFGHVISAKVYVDRYTGESKGFGF 324
Score = 37.4 bits (85), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 36/63 (57%), Gaps = 9/63 (14%)
Query: 29 KMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAAFLK-----IARA 83
K+FVGQ+PR DE + ++F+ YG + I +++ + G AF+K +A+A
Sbjct: 100 KLFVGQLPREADEDFVRELFTSYGDITGIYIIKKRNNEAKNG----CAFVKFRERDMAQA 155
Query: 84 AIE 86
AI+
Sbjct: 156 AID 158
>gi|347964873|ref|XP_309173.5| AGAP000977-PA [Anopheles gambiae str. PEST]
gi|333466517|gb|EAA04971.6| AGAP000977-PA [Anopheles gambiae str. PEST]
Length = 163
Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 32/44 (72%)
Query: 30 MFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
+FVG +P + E D+ +FS+YG + N+N++RDK TG+SKG F
Sbjct: 36 IFVGGLPYDLTEGDVLCVFSQYGEIVNVNLVRDKATGKSKGFAF 79
>gi|432900542|ref|XP_004076708.1| PREDICTED: RNA-binding motif protein, X-linked 2-like [Oryzias
latipes]
Length = 255
Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 32/48 (66%)
Query: 26 DFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
D +FVG P + E DL +FS+YG + N+N++RDK TG+SKG F
Sbjct: 34 DSAWIFVGGFPYELTEGDLLCVFSQYGEIVNVNLVRDKKTGKSKGFCF 81
>gi|312379149|gb|EFR25518.1| hypothetical protein AND_09071 [Anopheles darlingi]
Length = 232
Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 33/48 (68%)
Query: 26 DFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
D +FVG +P + E D+ +FS+YG + NIN++RDK +G+SKG F
Sbjct: 92 DSAWIFVGGLPYDLTEGDVICVFSQYGEIVNINLVRDKTSGKSKGFCF 139
>gi|170060753|ref|XP_001865940.1| RNA-binding motif protein [Culex quinquefasciatus]
gi|167879121|gb|EDS42504.1| RNA-binding motif protein [Culex quinquefasciatus]
Length = 137
Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 32/45 (71%)
Query: 26 DFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKG 70
D +FVG +P + E DL +FS+YG + NIN++RD+ TG+SKG
Sbjct: 32 DSAWIFVGGLPSELTEGDLLAVFSQYGEIVNINLVRDRKTGKSKG 76
>gi|403279255|ref|XP_003931175.1| PREDICTED: RNA-binding motif protein, X-linked 2 [Saimiri
boliviensis boliviensis]
Length = 342
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 33/48 (68%)
Query: 26 DFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
D +F+G +P + E D+ +FS+YG + NIN++RDK TG+SKG F
Sbjct: 54 DSAWIFLGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCF 101
>gi|25807805|gb|AAN73886.1| CUG-BP and ETR-3 like factor 3 [Homo sapiens]
Length = 41
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 31/39 (79%)
Query: 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRD 62
+PD IK+FVGQIPR ++E DL +F ++GR++ + V++D
Sbjct: 3 EPDAIKLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKD 41
>gi|397496325|ref|XP_003846130.1| PREDICTED: LOW QUALITY PROTEIN: RNA-binding motif protein,
X-linked 2 [Pan paniscus]
Length = 350
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 33/48 (68%)
Query: 26 DFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
D +F+G +P + E D+ +FS+YG + NIN++RDK TG+SKG F
Sbjct: 34 DSAWIFLGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCF 81
>gi|296236404|ref|XP_002763305.1| PREDICTED: RNA-binding motif protein, X-linked 2-like [Callithrix
jacchus]
Length = 342
Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 33/48 (68%)
Query: 26 DFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
D +F+G +P + E D+ +FS+YG + NIN++RDK TG+SKG F
Sbjct: 54 DSAWIFLGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCF 101
>gi|355715858|gb|AES05425.1| RNA binding motif protein, X-linked 2 [Mustela putorius furo]
Length = 182
Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 33/48 (68%)
Query: 26 DFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
D +F+G +P + E D+ +FS+YG + NIN++RDK TG+SKG F
Sbjct: 41 DSAWIFLGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCF 88
>gi|402911397|ref|XP_003919621.1| PREDICTED: LOW QUALITY PROTEIN: RNA-binding motif protein,
X-linked 2 [Papio anubis]
Length = 322
Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 33/48 (68%)
Query: 26 DFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
D +F+G +P + E D+ +FS+YG + NIN++RDK TG+SKG F
Sbjct: 34 DSAWIFLGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCF 81
>gi|4929627|gb|AAD34074.1|AF151837_1 CGI-79 protein [Homo sapiens]
Length = 351
Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 33/48 (68%)
Query: 26 DFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
D +F+G +P + E D+ +FS+YG + NIN++RDK TG+SKG F
Sbjct: 34 DSAWIFLGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCF 81
>gi|308456493|ref|XP_003090683.1| CRE-ETR-1 protein [Caenorhabditis remanei]
gi|308261154|gb|EFP05107.1| CRE-ETR-1 protein [Caenorhabditis remanei]
Length = 612
Score = 52.0 bits (123), Expect = 5e-05, Method: Composition-based stats.
Identities = 27/57 (47%), Positives = 34/57 (59%), Gaps = 2/57 (3%)
Query: 34 QIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAAFLKIARAAIEPQKA 90
QIPR +E D ++F YG VY+ N+LRDK T SKG F F + + AIE Q A
Sbjct: 24 QIPRQWNEVDCRRLFEAYGSVYSCNILRDKSTQTSKGCCFVTFFHR--KDAIEAQGA 78
Score = 40.0 bits (92), Expect = 0.18, Method: Composition-based stats.
Identities = 17/45 (37%), Positives = 32/45 (71%), Gaps = 1/45 (2%)
Query: 29 KMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
K+F+GQ+ + E +L ++FS++G++ + +VLRD G+S+G F
Sbjct: 106 KLFIGQLSKKHSEENLREIFSKFGQIEDCSVLRDN-DGKSRGCAF 149
Score = 35.0 bits (79), Expect = 5.8, Method: Composition-based stats.
Identities = 15/45 (33%), Positives = 24/45 (53%)
Query: 25 PDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSK 69
PD +F+ +P+ + DL F+ +G + + V DKVT SK
Sbjct: 524 PDGANLFIYHLPQDFGDTDLINTFAPFGVILSAKVFIDKVTNLSK 568
>gi|340369729|ref|XP_003383400.1| PREDICTED: CUGBP Elav-like family member 3-A-like [Amphimedon
queenslandica]
Length = 447
Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 36/56 (64%), Gaps = 1/56 (1%)
Query: 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAAFLK 79
DPD IK+FVGQIP+ DE + + E+G ++ IN+++DK +SKG F LK
Sbjct: 13 DPDKIKLFVGQIPKEYDEEQIKALLEEFGPIHEINIIKDK-EKRSKGCAFVTYCLK 67
Score = 39.3 bits (90), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 32/58 (55%)
Query: 12 EYVRSMSLPEQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSK 69
Y R + ++ P+ +F+ +P + ++DL MFS++G+V + V DK T SK
Sbjct: 345 HYGRYIHQKQREGPEGGNLFIYHLPNDIKDSDLANMFSQFGKVISAKVFLDKHTNLSK 402
Score = 36.6 bits (83), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 34/53 (64%), Gaps = 5/53 (9%)
Query: 29 KMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAAFLKIA 81
++FVGQ+ M + + +FS +G V ++++LRDK G SK +AAF+++
Sbjct: 107 RLFVGQLSPEMSDEQVANLFSPFGLVEDVSILRDK-DGVSK----KAAFVRMG 154
>gi|388453455|ref|NP_001253777.1| RNA-binding motif protein, X-linked 2 [Macaca mulatta]
gi|380813648|gb|AFE78698.1| RNA-binding motif protein, X-linked 2 [Macaca mulatta]
gi|383419077|gb|AFH32752.1| RNA-binding motif protein, X-linked 2 [Macaca mulatta]
gi|384947606|gb|AFI37408.1| RNA-binding motif protein, X-linked 2 [Macaca mulatta]
Length = 322
Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 33/48 (68%)
Query: 26 DFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
D +F+G +P + E D+ +FS+YG + NIN++RDK TG+SKG F
Sbjct: 34 DSAWIFLGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCF 81
>gi|332026997|gb|EGI67093.1| RNA-binding motif protein, X-linked 2 [Acromyrmex echinatior]
Length = 172
Score = 51.6 bits (122), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 32/44 (72%)
Query: 30 MFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
+FVG +P ++ E D+ +FS+YG V NIN++RDK TG+ KG F
Sbjct: 69 IFVGGLPYNLTEGDVIAIFSQYGEVVNINLIRDKDTGKQKGYGF 112
>gi|348552954|ref|XP_003462292.1| PREDICTED: RNA-binding motif protein, X-linked 2-like [Cavia
porcellus]
Length = 388
Score = 51.6 bits (122), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 33/48 (68%)
Query: 26 DFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
D +F+G +P + E D+ +FS+YG + NIN++RDK TG+SKG F
Sbjct: 86 DSAWIFLGGLPYELTEGDVICVFSQYGEIVNINLVRDKKTGKSKGFCF 133
>gi|5531845|gb|AAD44497.1| RNA-binding protein [Homo sapiens]
Length = 276
Score = 51.6 bits (122), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 33/48 (68%)
Query: 26 DFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
D +F+G +P + E D+ +FS+YG + NIN++RDK TG+SKG F
Sbjct: 34 DSAWIFLGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCF 81
>gi|116283305|gb|AAH03676.1| RBMX2 protein [Homo sapiens]
Length = 163
Score = 51.6 bits (122), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 33/48 (68%)
Query: 26 DFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
D +F+G +P + E D+ +FS+YG + NIN++RDK TG+SKG F
Sbjct: 34 DSAWIFLGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCF 81
>gi|111494063|gb|AAI05583.1| RBMX2 protein [Homo sapiens]
Length = 173
Score = 51.6 bits (122), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 33/48 (68%)
Query: 26 DFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
D +F+G +P + E D+ +FS+YG + NIN++RDK TG+SKG F
Sbjct: 34 DSAWIFLGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCF 81
>gi|332226384|ref|XP_003262369.1| PREDICTED: RNA-binding motif protein, X-linked 2 [Nomascus
leucogenys]
Length = 322
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 33/48 (68%)
Query: 26 DFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
D +F+G +P + E D+ +FS+YG + NIN++RDK TG+SKG F
Sbjct: 34 DSAWIFLGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCF 81
>gi|383847795|ref|XP_003699538.1| PREDICTED: RNA-binding motif protein, X-linked 2-like [Megachile
rotundata]
Length = 139
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 1/59 (1%)
Query: 15 RSMSLPEQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
R +S +Q D +F+G +P + E D+ +FS+YG V NIN++RDK TG+ KG F
Sbjct: 22 RKVSWHDQY-KDSAWIFIGGLPYDLTEGDVVTIFSQYGEVVNINLIRDKDTGKQKGYGF 79
>gi|342184770|emb|CCC94252.1| putative RNA-binding protein [Trypanosoma congolense IL3000]
gi|342184771|emb|CCC94253.1| unnamed protein product [Trypanosoma congolense IL3000]
Length = 116
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 32/45 (71%)
Query: 29 KMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
++FVGQ+ +E D++ +F+ YG ++N+LRDKVT +SKG F
Sbjct: 6 RLFVGQVNFDANEEDVSALFNFYGNALHVNILRDKVTNKSKGSAF 50
>gi|47221432|emb|CAF97350.1| unnamed protein product [Tetraodon nigroviridis]
Length = 180
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 32/48 (66%)
Query: 26 DFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
D +F+G P + E D+ +FS+YG + NIN++RDK TG+SKG F
Sbjct: 33 DSAWVFIGGFPYELSEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCF 80
>gi|71032751|ref|XP_766017.1| hypothetical protein [Theileria parva strain Muguga]
gi|68352974|gb|EAN33734.1| RNA-binding protein, putative [Theileria parva]
Length = 539
Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 42/64 (65%), Gaps = 5/64 (7%)
Query: 19 LPEQPDPDF-IKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAAF 77
LP P P IK+FV +IP++ +E+DL ++F E+G V ++ V+RDKVT K AF
Sbjct: 127 LPCAPAPAVDIKLFVARIPKTYEESDLRRLFQEFGPVKDVIVIRDKVTNSHKN----CAF 182
Query: 78 LKIA 81
+K+A
Sbjct: 183 VKMA 186
Score = 43.9 bits (102), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 31/52 (59%)
Query: 22 QPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
+P D K+FVG +P+S+ E DL +F ++G + VL+D G +KG F
Sbjct: 231 EPGMDEAKLFVGSLPKSLTEDDLASLFKDFGEPLEVFVLKDLTCGGNKGCGF 282
Score = 34.3 bits (77), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 24/44 (54%)
Query: 30 MFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
+F+ IP + DL + FS +GRV + D+ T +SKG F
Sbjct: 456 LFIFHIPPQWNNNDLFRTFSPFGRVVQARIAIDRSTNRSKGYAF 499
>gi|166796147|gb|AAI59019.1| RNA binding motif protein, X-linked 2 [Xenopus (Silurana)
tropicalis]
gi|166796532|gb|AAI59007.1| RNA binding motif protein, X-linked 2 [Xenopus (Silurana)
tropicalis]
Length = 269
Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 33/48 (68%)
Query: 26 DFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
D +F+G +P + E D+ +FS+YG V NIN++RDK +G+S+G F
Sbjct: 34 DSAWLFIGGLPYELSEGDIICVFSQYGEVVNINLVRDKSSGRSRGFCF 81
>gi|62858501|ref|NP_001016941.1| RNA binding motif protein, X-linked 2 [Xenopus (Silurana)
tropicalis]
gi|89268233|emb|CAJ83312.1| RNA binding motif protein, X-linked 2 [Xenopus (Silurana)
tropicalis]
Length = 269
Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 33/48 (68%)
Query: 26 DFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
D +F+G +P + E D+ +FS+YG V NIN++RDK +G+S+G F
Sbjct: 34 DSAWLFIGGLPYELSEGDIICVFSQYGEVVNINLVRDKSSGRSRGFCF 81
>gi|224128620|ref|XP_002320377.1| predicted protein [Populus trichocarpa]
gi|222861150|gb|EEE98692.1| predicted protein [Populus trichocarpa]
Length = 432
Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 33/46 (71%)
Query: 28 IKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
+K+FVGQ+P++M EA+L MF ++ V +N+++DK T S+G F
Sbjct: 16 VKLFVGQVPKNMTEAELLAMFKDFALVDEVNIIKDKTTRASRGCCF 61
Score = 39.7 bits (91), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 38/63 (60%), Gaps = 10/63 (15%)
Query: 29 KMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAAFLKI-----ARA 83
K+FVG +P+++ EA+++ +FS+YG + ++ +LR S+ AFLK A A
Sbjct: 105 KLFVGMLPKNVSEAEVSDLFSKYGTIKDLQILRG-----SQQTSKSCAFLKYETKEQALA 159
Query: 84 AIE 86
A+E
Sbjct: 160 ALE 162
Score = 35.8 bits (81), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 24/45 (53%)
Query: 25 PDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSK 69
P +F+ IP+ + +L F +G+V + V DKVTG SK
Sbjct: 345 PPGANLFIYHIPQEFGDQELANAFEAFGKVLSAKVFVDKVTGVSK 389
>gi|301619753|ref|XP_002939264.1| PREDICTED: hypothetical protein LOC100497806 [Xenopus (Silurana)
tropicalis]
Length = 280
Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 33/48 (68%)
Query: 26 DFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
D +F+G +P + E D+ +FS+YG V NIN++RDK +G+S+G F
Sbjct: 45 DSAWLFIGGLPYELSEGDIICVFSQYGEVVNINLVRDKSSGRSRGFCF 92
>gi|356498939|ref|XP_003518303.1| PREDICTED: zinc finger CCCH domain-containing protein 42-like
[Glycine max]
Length = 235
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 34/50 (68%)
Query: 26 DFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEA 75
D +FVG IP + E DL +F++YG V ++N++RDK TG+SKG F A
Sbjct: 34 DSAYVFVGGIPFDLTEGDLLAVFAQYGEVVDVNLVRDKGTGKSKGFAFLA 83
>gi|91085985|ref|XP_972080.1| PREDICTED: similar to CG10466 CG10466-PA [Tribolium castaneum]
gi|270010180|gb|EFA06628.1| hypothetical protein TcasGA2_TC009547 [Tribolium castaneum]
Length = 266
Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 33/48 (68%)
Query: 26 DFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
D +F+G +P + E D+ +FS+YG V NIN++RDK +G+SKG F
Sbjct: 32 DSAWVFIGGLPFDLTEGDIICIFSQYGEVVNINLIRDKDSGKSKGFCF 79
>gi|195345201|ref|XP_002039161.1| GM17378 [Drosophila sechellia]
gi|194134291|gb|EDW55807.1| GM17378 [Drosophila sechellia]
Length = 154
Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 31/48 (64%)
Query: 26 DFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
D +FV P ++ E DL +FS+YG V NIN++RD TG+SKG F
Sbjct: 32 DSAWIFVAGFPYTLTEGDLVCVFSQYGEVVNINLIRDSKTGKSKGFCF 79
>gi|195484576|ref|XP_002090750.1| GE13281 [Drosophila yakuba]
gi|194176851|gb|EDW90462.1| GE13281 [Drosophila yakuba]
Length = 154
Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 31/48 (64%)
Query: 26 DFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
D +FV P ++ E DL +FS+YG V NIN++RD TG+SKG F
Sbjct: 32 DSAWIFVAGFPYTLTEGDLVCVFSQYGEVVNINLIRDSKTGKSKGFCF 79
>gi|195580271|ref|XP_002079976.1| GD24233 [Drosophila simulans]
gi|194191985|gb|EDX05561.1| GD24233 [Drosophila simulans]
Length = 155
Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 31/48 (64%)
Query: 26 DFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
D +FV P ++ E DL +FS+YG V NIN++RD TG+SKG F
Sbjct: 32 DSAWIFVAGFPYTLTEGDLVCVFSQYGEVVNINLIRDSKTGKSKGFCF 79
>gi|20129641|ref|NP_610003.1| CG10466, isoform A [Drosophila melanogaster]
gi|442628478|ref|NP_001260601.1| CG10466, isoform B [Drosophila melanogaster]
gi|7298629|gb|AAF53845.1| CG10466, isoform A [Drosophila melanogaster]
gi|440213961|gb|AGB93136.1| CG10466, isoform B [Drosophila melanogaster]
Length = 154
Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 31/48 (64%)
Query: 26 DFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
D +FV P ++ E DL +FS+YG V NIN++RD TG+SKG F
Sbjct: 32 DSAWIFVAGFPYTLTEGDLVCVFSQYGEVVNINLIRDSKTGKSKGFCF 79
>gi|297809825|ref|XP_002872796.1| hypothetical protein ARALYDRAFT_490251 [Arabidopsis lyrata subsp.
lyrata]
gi|297318633|gb|EFH49055.1| hypothetical protein ARALYDRAFT_490251 [Arabidopsis lyrata subsp.
lyrata]
Length = 444
Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 32/46 (69%)
Query: 28 IKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
+K+FVGQIP+ M E+ L +F E+ V +N+++DK+T S+G F
Sbjct: 18 VKLFVGQIPKHMSESQLLTLFQEFAVVDEVNIIKDKITRASRGCCF 63
Score = 39.7 bits (91), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 33/51 (64%), Gaps = 5/51 (9%)
Query: 29 KMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAAFLK 79
K+FVG +P+++ EA++ +FS+YG + ++ +LR SKG AFLK
Sbjct: 107 KLFVGMLPKNVSEAEVQSLFSKYGTIKDLQILRG-AQQTSKG----CAFLK 152
Score = 34.7 bits (78), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 23/45 (51%)
Query: 25 PDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSK 69
P+ +F+ IPR + +L F +G V + V DK TG SK
Sbjct: 352 PEGANLFIYNIPREFGDQELAAAFQSFGIVLSAKVFVDKATGVSK 396
>gi|348667006|gb|EGZ06832.1| hypothetical protein PHYSODRAFT_353005 [Phytophthora sojae]
Length = 507
Score = 50.8 bits (120), Expect = 1e-04, Method: Composition-based stats.
Identities = 21/54 (38%), Positives = 37/54 (68%)
Query: 28 IKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAAFLKIA 81
+K+FVGQ+PR+M+E DL + +G + ++ ++RDK+TG +G F + F + A
Sbjct: 36 VKLFVGQVPRTMEEDDLRPVLEVFGPLEDLVIIRDKITGAHRGCAFASYFTRDA 89
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 27/63 (42%), Positives = 38/63 (60%), Gaps = 9/63 (14%)
Query: 29 KMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAAFLKI-----ARA 83
K+F+G IP++ DEA + ++F +G + + +LR TGQSKG AFLK A A
Sbjct: 126 KLFIGMIPKTADEAAIREVFELFGTIEEVYILRHPATGQSKG----CAFLKFKERSSALA 181
Query: 84 AIE 86
AIE
Sbjct: 182 AIE 184
Score = 40.0 bits (92), Expect = 0.17, Method: Composition-based stats.
Identities = 17/46 (36%), Positives = 27/46 (58%)
Query: 25 PDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKG 70
P +F+ +P + +ADL F+ +G V + V DK+TG+SKG
Sbjct: 348 PTGANLFIYHLPHDLTDADLATAFAPFGTVISAKVYMDKITGESKG 393
>gi|3924594|gb|AAC79095.1| putative ribonucleoprotein [Arabidopsis thaliana]
gi|4262139|gb|AAD14439.1| putative ribonucleoprotein [Arabidopsis thaliana]
gi|7270181|emb|CAB77796.1| putative ribonucleoprotein [Arabidopsis thaliana]
Length = 492
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 32/46 (69%)
Query: 28 IKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
+K+FVGQIP+ M E+ L +F E+ V +N+++DK+T S+G F
Sbjct: 18 VKLFVGQIPKHMSESQLLTLFQEFAVVDEVNIIKDKITRASRGCCF 63
Score = 39.7 bits (91), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 33/51 (64%), Gaps = 5/51 (9%)
Query: 29 KMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAAFLK 79
K+FVG +P+++ EA++ +FS+YG + ++ +LR SKG AFLK
Sbjct: 107 KLFVGMLPKNVSEAEVQSLFSKYGTIKDLQILRG-AQQTSKG----CAFLK 152
Score = 34.7 bits (78), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 26/52 (50%)
Query: 18 SLPEQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSK 69
S+ + P+ +F+ IPR + +L F +G V + V DK TG SK
Sbjct: 339 SVVQTEGPEGANLFIYNIPREFGDQELAAAFQSFGIVLSAKVFVDKATGVSK 390
>gi|18412143|ref|NP_567249.1| RNA-binding protein-defense related 1 [Arabidopsis thaliana]
gi|21536899|gb|AAM61231.1| putative ribonucleoprotein [Arabidopsis thaliana]
gi|222423375|dbj|BAH19660.1| AT4G03110 [Arabidopsis thaliana]
gi|332656872|gb|AEE82272.1| RNA-binding protein-defense related 1 [Arabidopsis thaliana]
Length = 441
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 32/46 (69%)
Query: 28 IKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
+K+FVGQIP+ M E+ L +F E+ V +N+++DK+T S+G F
Sbjct: 18 VKLFVGQIPKHMSESQLLTLFQEFAVVDEVNIIKDKITRASRGCCF 63
Score = 39.7 bits (91), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 33/51 (64%), Gaps = 5/51 (9%)
Query: 29 KMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAAFLK 79
K+FVG +P+++ EA++ +FS+YG + ++ +LR SKG AFLK
Sbjct: 107 KLFVGMLPKNVSEAEVQSLFSKYGTIKDLQILRG-AQQTSKG----CAFLK 152
Score = 34.7 bits (78), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 23/45 (51%)
Query: 25 PDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSK 69
P+ +F+ IPR + +L F +G V + V DK TG SK
Sbjct: 346 PEGANLFIYNIPREFGDQELAAAFQSFGIVLSAKVFVDKATGVSK 390
>gi|402582034|gb|EJW75980.1| Rbmx2 protein, partial [Wuchereria bancrofti]
Length = 147
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 35/53 (66%)
Query: 21 EQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
Q D +++G +P ++E D+ +FS+YG + NIN++RD+ TG+S+G F
Sbjct: 31 HQKYSDSAWIYIGGLPYDLNEGDVIAVFSQYGEIVNINLIRDRKTGKSRGFAF 83
>gi|410929842|ref|XP_003978308.1| PREDICTED: RNA-binding motif protein, X-linked 2-like [Takifugu
rubripes]
Length = 341
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 32/48 (66%)
Query: 26 DFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
D +F+G P + E D+ +FS+YG + NIN++RDK TG+SKG F
Sbjct: 34 DSAWVFIGGFPYELSEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCF 81
>gi|237832459|ref|XP_002365527.1| RNA recognition motif domain-containing protein [Toxoplasma gondii
ME49]
gi|211963191|gb|EEA98386.1| RNA recognition motif domain-containing protein [Toxoplasma gondii
ME49]
gi|221487976|gb|EEE26190.1| RNA recognition motif domain-containing protein, putative
[Toxoplasma gondii GT1]
gi|221508501|gb|EEE34070.1| RNA recognition motif domain-containing protein, putative
[Toxoplasma gondii VEG]
Length = 648
Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 26/69 (37%), Positives = 40/69 (57%), Gaps = 4/69 (5%)
Query: 16 SMSLPEQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEA 75
S LP P IK+FVG++P ++DE L +F +G V + V+RDK T + + +
Sbjct: 90 SQPLPHNAPPVEIKLFVGRVPHTVDEEALRPIFESFGEVREVFVIRDKSTLKHR----NS 145
Query: 76 AFLKIARAA 84
AF+K+A A
Sbjct: 146 AFVKMASLA 154
Score = 47.8 bits (112), Expect = 8e-04, Method: Composition-based stats.
Identities = 22/48 (45%), Positives = 28/48 (58%)
Query: 26 DFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
D K+FVG IPR+M E +L F YG V + V++D TG KG F
Sbjct: 203 DQAKLFVGSIPRTMSEDELRLFFQTYGTVEEVFVMKDSATGTGKGCAF 250
Score = 34.3 bits (77), Expect = 9.9, Method: Composition-based stats.
Identities = 16/53 (30%), Positives = 28/53 (52%)
Query: 21 EQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
E P +FV IP +ADL + FS +G + + ++ DK + +++G F
Sbjct: 401 ETAGPPGANVFVFHIPNEWTKADLVQTFSGFGNIVSCHIAVDKASHRNRGFAF 453
>gi|195053126|ref|XP_001993480.1| GH13830 [Drosophila grimshawi]
gi|193900539|gb|EDV99405.1| GH13830 [Drosophila grimshawi]
Length = 180
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 31/48 (64%)
Query: 26 DFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
D +FV P ++ E DL +FS+YG V NIN++RD TG+SKG F
Sbjct: 32 DSAWIFVAGFPYTLSEGDLVCVFSQYGEVVNINLVRDGKTGKSKGFCF 79
>gi|168017537|ref|XP_001761304.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162687644|gb|EDQ74026.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 160
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 33/47 (70%)
Query: 27 FIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
F+K+FVG +PR++ E ++ MF+E+G V + +++DK TG +G F
Sbjct: 1 FVKLFVGSVPRTITEDEVRPMFAEHGNVIEVAIIKDKRTGNQQGCCF 47
Score = 34.7 bits (78), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 29 KMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
K+FVG + + E ++ ++F YGRV ++ ++RD+ QS+G F
Sbjct: 94 KLFVGSLNKQASEKEIEELFLPYGRVDDVYIMRDE-QKQSRGCAF 137
>gi|301100224|ref|XP_002899202.1| CUG-BP- and ETR-3-like factor, putative [Phytophthora infestans
T30-4]
gi|262104119|gb|EEY62171.1| CUG-BP- and ETR-3-like factor, putative [Phytophthora infestans
T30-4]
Length = 496
Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 21/54 (38%), Positives = 37/54 (68%)
Query: 28 IKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAAFLKIA 81
+K+FVGQ+PR+M+E DL + +G + ++ ++RDK+TG +G F + F + A
Sbjct: 32 VKLFVGQVPRTMEEDDLRPVLEVFGPLEDLVIIRDKITGAHRGCAFASYFTRDA 85
Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 27/63 (42%), Positives = 37/63 (58%), Gaps = 9/63 (14%)
Query: 29 KMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAAFLKI-----ARA 83
K+F+G IP++ DEA + +F +G + + +LR TGQSKG AFLK A A
Sbjct: 122 KLFIGMIPKTADEAAIRDVFELFGSIEEVYILRHPATGQSKG----CAFLKFKERSSALA 177
Query: 84 AIE 86
AIE
Sbjct: 178 AIE 180
Score = 39.7 bits (91), Expect = 0.20, Method: Composition-based stats.
Identities = 17/46 (36%), Positives = 27/46 (58%)
Query: 25 PDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKG 70
P +F+ +P + +ADL F+ +G V + V DK+TG+SKG
Sbjct: 342 PTGANLFIYHLPHDLTDADLATAFAPFGTVISAKVYMDKITGESKG 387
>gi|126663185|ref|ZP_01734183.1| RNA binding protein [Flavobacteria bacterium BAL38]
gi|126624843|gb|EAZ95533.1| RNA binding protein [Flavobacteria bacterium BAL38]
Length = 111
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 41/63 (65%), Gaps = 5/63 (7%)
Query: 28 IKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAAFLKIARAAIEP 87
+ +FVG +P S++EADL F EYG V ++ ++ DK TG+SKG F+++A A E
Sbjct: 1 MNIFVGSLPFSVEEADLRGYFEEYGAVESVKIISDKFTGRSKG----FGFVEMANDA-EA 55
Query: 88 QKA 90
QKA
Sbjct: 56 QKA 58
>gi|194760456|ref|XP_001962456.1| GF14433 [Drosophila ananassae]
gi|190616153|gb|EDV31677.1| GF14433 [Drosophila ananassae]
Length = 155
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 31/48 (64%)
Query: 26 DFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
D +FV P ++ E DL +FS+YG V NIN++RD TG+SKG F
Sbjct: 32 DSAWIFVAGFPYTLTEGDLICVFSQYGEVVNINLVRDSKTGKSKGFCF 79
>gi|112983436|ref|NP_001037638.1| RNA binding motif protein X-linked 2 [Bombyx mori]
gi|109706821|gb|ABG42997.1| RNA binding motif protein X-linked 2 [Bombyx mori]
Length = 181
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 31/48 (64%)
Query: 26 DFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
D +FVG +P E D+ +FS+YG + NIN++RDK TG+ KG F
Sbjct: 32 DSAWIFVGGLPYDWTEGDVICVFSQYGEIVNINMVRDKTTGKPKGFAF 79
>gi|440800622|gb|ELR21658.1| RNA recognition motif domain containing protein [Acanthamoeba
castellanii str. Neff]
Length = 229
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 32/45 (71%)
Query: 29 KMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
K+FVGQ+P+++ EA + FS YG + ++N+LRD+ T SKG F
Sbjct: 13 KLFVGQVPKNVQEATIRSFFSPYGEIVHMNILRDRFTQISKGCGF 57
>gi|325189112|emb|CCA23638.1| CUGBP and ETR3like factor putative [Albugo laibachii Nc14]
Length = 550
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 33/48 (68%)
Query: 28 IKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEA 75
+K+F+GQ+PR+M E +L + +G V ++ ++RDK+TG +G F +
Sbjct: 76 MKLFIGQVPRTMTETELLPILEAFGEVVDLTIIRDKLTGSHRGCAFAS 123
Score = 43.5 bits (101), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 37/63 (58%), Gaps = 9/63 (14%)
Query: 29 KMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAAFLKI-----ARA 83
K+F+G IP++ E + +F E+G + + +LR + TGQSKG AFLK A A
Sbjct: 166 KLFIGMIPKTATEQAIYDIFGEFGPIDEVFILRHQPTGQSKG----CAFLKFKERESAVA 221
Query: 84 AIE 86
+IE
Sbjct: 222 SIE 224
Score = 41.2 bits (95), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 28/49 (57%)
Query: 25 PDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
P +F+ +P + +ADL F+ +G V + V DK+TG+SKG F
Sbjct: 401 PPGANLFIYHLPHDLTDADLATAFAPFGTVISAKVYMDKLTGESKGFGF 449
>gi|427781965|gb|JAA56434.1| Hypothetical protein [Rhipicephalus pulchellus]
Length = 109
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 31/44 (70%)
Query: 30 MFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
+F+G + + E D+ +FS+YG V NIN++RDK TG+SKG F
Sbjct: 38 IFIGGLDYQLTEGDVICVFSQYGEVVNINLIRDKKTGKSKGYCF 81
>gi|283838931|gb|ADB44797.1| FCA [Vitis vinifera]
Length = 281
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 31/47 (65%)
Query: 27 FIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
F K+FVG +PR+ E D+ +F E+G V + +++DK TGQ +G F
Sbjct: 101 FAKLFVGSVPRTATEEDIRPLFEEHGNVLEVALIKDKRTGQQQGCCF 147
Score = 34.7 bits (78), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 31/45 (68%), Gaps = 1/45 (2%)
Query: 29 KMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
K+FVG + + E ++ ++FS YG+V ++ ++RD++ QS+G F
Sbjct: 194 KLFVGSLNKQATEKEVKEIFSPYGQVEDVYLMRDELK-QSRGCGF 237
>gi|356572661|ref|XP_003554485.1| PREDICTED: CUGBP Elav-like family member 2-like [Glycine max]
Length = 429
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 31/46 (67%)
Query: 28 IKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
+K+FVGQ+P+ M E +L MF E+ V +N+++DK T S+G F
Sbjct: 13 VKLFVGQVPKHMTEPELLAMFKEFALVDEVNIIKDKATRASRGCCF 58
Score = 39.3 bits (90), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 38/63 (60%), Gaps = 10/63 (15%)
Query: 29 KMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAAFLKI-----ARA 83
K+F+G +P+++ E +++ +FS+YG + ++ +LR SKG AFLK A A
Sbjct: 102 KLFIGMLPKNVSEVEISALFSKYGTIKDLQILRGSQQ-TSKG----CAFLKYETKEQALA 156
Query: 84 AIE 86
A+E
Sbjct: 157 ALE 159
Score = 35.4 bits (80), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 23/45 (51%)
Query: 25 PDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSK 69
P +F+ IP+ + +L F +GRV + V DK TG SK
Sbjct: 341 PPGANLFIYHIPQEFGDQELATAFQPFGRVLSAKVFVDKATGVSK 385
>gi|449668124|ref|XP_002167931.2| PREDICTED: CUGBP Elav-like family member 2-like [Hydra
magnipapillata]
Length = 511
Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 22/58 (37%), Positives = 36/58 (62%)
Query: 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAAFLKIA 81
+P+ K+F+GQ+PR+ E +L + YG ++ +++L DK TGQ KG F + K A
Sbjct: 17 EPEACKLFIGQVPRNWTEKELRPILEPYGEIHELSILYDKYTGQHKGCAFLVFYEKEA 74
Score = 37.7 bits (86), Expect = 0.96, Method: Composition-based stats.
Identities = 18/45 (40%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Query: 29 KMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
K+F+G + + ++E DL MFS YG + + +LR+ G SKG F
Sbjct: 110 KLFIGMLSKKLNEDDLRIMFSPYGTIEELTILRNP-DGGSKGCAF 153
Score = 36.2 bits (82), Expect = 2.6, Method: Composition-based stats.
Identities = 17/50 (34%), Positives = 27/50 (54%)
Query: 20 PEQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSK 69
P++ PD +F+ +P+ +ADL + F +G V + V DK T SK
Sbjct: 417 PQKEGPDGANLFIYHLPQEFTDADLMQTFMPFGNVVSAKVFIDKPTLLSK 466
>gi|399217298|emb|CCF73985.1| unnamed protein product [Babesia microti strain RI]
Length = 432
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 40/61 (65%), Gaps = 4/61 (6%)
Query: 21 EQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAAFLKI 80
+P D +K+F+G +P+++ E + K+F EYG+V + +++D TG SKG AF+K+
Sbjct: 122 SEPGVDQVKLFIGSVPKTITEEQIKKVFGEYGQVEEVFIMKDLSTGLSKG----CAFVKM 177
Query: 81 A 81
+
Sbjct: 178 S 178
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 42/85 (49%), Gaps = 5/85 (5%)
Query: 1 MGREKRRECTYEYVRSMSLPEQPDPDF-IKMFVGQIPRSMDEADLTKMFSEYGRVYNINV 59
MG E E E + + + P P IK+FV ++P+S + DL F +G+V + +
Sbjct: 1 MGEESSSEVDNESLATSTPACTPAPPLSIKLFVSRVPKSYTDTDLIPHFVPFGKVEEVTI 60
Query: 60 LRDKVTGQSKGKIFEAAFLKIARAA 84
++DK T K AF+K+ A
Sbjct: 61 IKDKTTNAHK----LCAFVKMGSIA 81
Score = 37.0 bits (84), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 27/49 (55%)
Query: 25 PDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
P +F+ IP ADL K FS++G + + + DK TG+++G F
Sbjct: 329 PPGANLFIFHIPYDWYYADLVKTFSQFGTIVSARIATDKGTGRNRGFAF 377
>gi|356551855|ref|XP_003544288.1| PREDICTED: zinc finger CCCH domain-containing protein 42-like
[Glycine max]
Length = 354
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 33/48 (68%)
Query: 26 DFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
D +FVG IP + E DL +F++YG V ++N++RDK TG+SKG F
Sbjct: 34 DSAYVFVGGIPFDLTEGDLLAVFAQYGEVVDVNLVRDKGTGKSKGFAF 81
>gi|340057784|emb|CCC52133.1| putative RNA-binding protein [Trypanosoma vivax Y486]
Length = 118
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 31/45 (68%)
Query: 29 KMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
++FVGQ+ DE+D+ +F+ YG ++N+LRD+ T +SKG F
Sbjct: 9 RLFVGQLNFHADESDVIALFNFYGTTLHVNILRDRATNKSKGSAF 53
>gi|170572253|ref|XP_001892040.1| RNA binding motif protein [Brugia malayi]
gi|158603075|gb|EDP39148.1| RNA binding motif protein, putative [Brugia malayi]
Length = 168
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 35/53 (66%)
Query: 21 EQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
Q D +++G +P ++E D+ +FS+YG + NIN++RD+ TG+S+G F
Sbjct: 31 HQKYSDSAWIYIGGLPYDLNEGDVIAVFSQYGEIVNINLIRDRKTGKSRGFAF 83
>gi|443697654|gb|ELT98021.1| hypothetical protein CAPTEDRAFT_86725, partial [Capitella teleta]
Length = 156
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 31/44 (70%)
Query: 30 MFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
++ G +P + E D+ +FS+YG + N+N++RDK TG+SKG F
Sbjct: 33 VYCGGLPYDLTEGDVVCVFSQYGEIVNVNLIRDKGTGKSKGFCF 76
>gi|356505495|ref|XP_003521526.1| PREDICTED: CUGBP Elav-like family member 1-like [Glycine max]
Length = 431
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 31/46 (67%)
Query: 28 IKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
+K+FVGQ+P+ M E +L MF E+ V +N+++DK T S+G F
Sbjct: 15 VKLFVGQVPKHMTEPELLAMFKEFALVDEVNIIKDKATRASRGCCF 60
Score = 38.9 bits (89), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 33/51 (64%), Gaps = 5/51 (9%)
Query: 29 KMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAAFLK 79
K+F+G +P+++ E +++ +FS+YG + ++ +LR SKG AFLK
Sbjct: 104 KLFIGMLPKNVSEVEISALFSKYGTIKDLQILRGSQQ-TSKG----CAFLK 149
Score = 35.4 bits (80), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 23/45 (51%)
Query: 25 PDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSK 69
P +F+ IP+ + +L F +GRV + V DK TG SK
Sbjct: 343 PPGANLFIYHIPQEFGDQELATAFQPFGRVLSAKVFVDKATGVSK 387
>gi|348544233|ref|XP_003459586.1| PREDICTED: hypothetical protein LOC100697480 [Oreochromis
niloticus]
Length = 304
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 23/44 (52%), Positives = 31/44 (70%)
Query: 30 MFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
+FVG P + E DL +FS+YG + NIN++RDK TG+SKG F
Sbjct: 38 IFVGGFPYELTEGDLICVFSQYGEIVNINLVRDKKTGKSKGFCF 81
>gi|340057786|emb|CCC52135.1| putative RNA-binding protein [Trypanosoma vivax Y486]
Length = 256
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Query: 29 KMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF-EAAFLKIARAAI 85
++FVGQ+ DE+D+ +F+ YG ++N+LRD+ T +SKG F E A + A AI
Sbjct: 147 RLFVGQLNFDADESDVIALFNFYGTTLHVNILRDRATNKSKGSAFVEYATTEEADCAI 204
>gi|324512768|gb|ADY45275.1| RNA-binding motif protein, X-linked 2 [Ascaris suum]
Length = 318
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 32/44 (72%)
Query: 30 MFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
+++G +P ++E D+ +FS+YG + NIN++RD TG+S+G F
Sbjct: 40 IYIGGLPYDLNEGDIITVFSQYGEIVNINLIRDHKTGKSRGFAF 83
>gi|255559360|ref|XP_002520700.1| RNA binding protein, putative [Ricinus communis]
gi|223540085|gb|EEF41662.1| RNA binding protein, putative [Ricinus communis]
Length = 436
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 30/46 (65%)
Query: 28 IKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
+K+FVGQ+P+ M E L MF E+ V +N+++DK T S+G F
Sbjct: 15 VKLFVGQVPKHMTEVQLLAMFKEFALVDEVNIIKDKTTRASRGCCF 60
Score = 40.8 bits (94), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 39/63 (61%), Gaps = 10/63 (15%)
Query: 29 KMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAAFLKI-----ARA 83
K+FVG +P+++ EA+++++FS YG + ++ +LR SKG AFLK A A
Sbjct: 104 KLFVGMLPKNVSEAEVSELFSTYGTIKDLQILRGSQQ-TSKG----CAFLKYETKEQALA 158
Query: 84 AIE 86
A+E
Sbjct: 159 ALE 161
Score = 35.4 bits (80), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 23/45 (51%)
Query: 25 PDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSK 69
P +F+ IP+ + +L F YG+V + V DK TG SK
Sbjct: 348 PPGSNLFIYHIPQEFGDQELASAFQPYGKVLSAKVFVDKATGVSK 392
>gi|291408201|ref|XP_002720429.1| PREDICTED: CG10466-like [Oryctolagus cuniculus]
Length = 431
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 22/44 (50%), Positives = 32/44 (72%)
Query: 30 MFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
+F+G +P + E D+ +FS+YG V NIN++RDK TG+SKG F
Sbjct: 140 IFLGGLPYELTEGDVICVFSQYGEVVNINLVRDKKTGKSKGFCF 183
>gi|194879282|ref|XP_001974209.1| GG21207 [Drosophila erecta]
gi|190657396|gb|EDV54609.1| GG21207 [Drosophila erecta]
Length = 154
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 31/48 (64%)
Query: 26 DFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
D +FV P ++ E D+ +FS+YG V NIN++RD TG+SKG F
Sbjct: 32 DSAWIFVAGFPYTLTEGDIVCVFSQYGEVVNINLIRDSKTGKSKGFCF 79
>gi|156543304|ref|XP_001603981.1| PREDICTED: RNA-binding motif protein, X-linked 2-like [Nasonia
vitripennis]
Length = 139
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 32/48 (66%)
Query: 26 DFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
D +F+G +P + E D+ +FS+YG + NIN++RDK TG+ KG F
Sbjct: 32 DSAWIFIGGLPYDLTEGDVIAVFSQYGEIVNINLVRDKDTGKQKGYGF 79
>gi|224104290|ref|XP_002313385.1| predicted protein [Populus trichocarpa]
gi|222849793|gb|EEE87340.1| predicted protein [Populus trichocarpa]
Length = 243
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 32/48 (66%)
Query: 26 DFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
D +FVG IP + E DL +F++YG V + N++RDK TG+SKG F
Sbjct: 34 DSAYVFVGGIPFDLTEGDLLAVFAQYGEVVDANLVRDKGTGKSKGFAF 81
>gi|195111486|ref|XP_002000309.1| GI10157 [Drosophila mojavensis]
gi|193916903|gb|EDW15770.1| GI10157 [Drosophila mojavensis]
Length = 356
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 36/58 (62%)
Query: 16 SMSLPEQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
SM+ P D ++VG +P S D A + ++F +G++ ++N+L+D+ T QS+G F
Sbjct: 105 SMARPSSDDTKKTNIYVGNLPLSYDAAQVREIFERFGKIVDLNLLKDRYTNQSRGTAF 162
>gi|401397143|ref|XP_003879991.1| hypothetical protein NCLIV_004400 [Neospora caninum Liverpool]
gi|325114399|emb|CBZ49956.1| hypothetical protein NCLIV_004400 [Neospora caninum Liverpool]
Length = 475
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 38/57 (66%), Gaps = 4/57 (7%)
Query: 28 IKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAAFLKIARAA 84
IK+FVG++P+SM++A L +F E+G V ++RDK TG+ K +AF+K+ A
Sbjct: 37 IKLFVGRVPQSMEDAALRPIFEEFGEVKEAVIIRDKATGKHK----NSAFVKMGSIA 89
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 30/52 (57%)
Query: 22 QPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
+P D K+F+G IPR M E ++ + FS YG V + V++D V KG F
Sbjct: 131 EPGQDQAKLFIGSIPRMMTEDEVRQFFSTYGTVEEVFVMKDNVQNTGKGCCF 182
>gi|17532167|ref|NP_495237.1| Protein C30B5.4 [Caenorhabditis elegans]
gi|351058643|emb|CCD66136.1| Protein C30B5.4 [Caenorhabditis elegans]
Length = 302
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
Query: 2 GREKRRECTYEYVRSMSLP-EQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVL 60
R RE + Y + Q D +++G + ++ E D+ +FS+YG V NIN++
Sbjct: 11 NRMNERELSLGYAGDLKKSWHQTYKDSAWIYIGGLSYALSEGDVIAVFSQYGEVMNINLI 70
Query: 61 RDKVTGQSKGKIF 73
RDK TG+SKG F
Sbjct: 71 RDKDTGKSKGFAF 83
>gi|147840589|emb|CAN72715.1| hypothetical protein VITISV_032469 [Vitis vinifera]
Length = 737
Score = 49.7 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 23/46 (50%), Positives = 33/46 (71%)
Query: 30 MFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEA 75
+FVG IP + E DL +FS+YG + ++N++RDK TG+SKG F A
Sbjct: 38 VFVGGIPFDLTEGDLLAVFSQYGEIVDVNLVRDKGTGKSKGFAFVA 83
>gi|126324409|ref|XP_001377779.1| PREDICTED: RNA-binding motif protein, X-linked 2-like
[Monodelphis domestica]
Length = 198
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 32/48 (66%)
Query: 26 DFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
D +FVG +P + E D+ +FS+YG + NIN++RDK T +SKG F
Sbjct: 34 DSAWVFVGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTRKSKGFCF 81
>gi|224112006|ref|XP_002316051.1| predicted protein [Populus trichocarpa]
gi|222865091|gb|EEF02222.1| predicted protein [Populus trichocarpa]
Length = 343
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 31/47 (65%)
Query: 27 FIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
F K+FVG +PR+ E D+ +F E+G V + +++DK TGQ +G F
Sbjct: 87 FAKLFVGSVPRTATEMDIRPLFEEHGNVIEVALIKDKRTGQQQGCCF 133
Score = 35.0 bits (79), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 38/59 (64%), Gaps = 2/59 (3%)
Query: 29 KMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF-EAAFLKIARAAIE 86
K+FVG + + E ++ ++F+ YGRV ++ ++RD++ QS+G F + + +A AAI
Sbjct: 180 KLFVGSLNKQATEKEVEEIFTPYGRVEDVYLMRDEMK-QSRGCGFVKYSHRDMALAAIN 237
>gi|340387228|ref|XP_003392109.1| PREDICTED: RNA-binding motif protein, X-linked 2-like, partial
[Amphimedon queenslandica]
Length = 123
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 31/44 (70%)
Query: 30 MFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
+F+G + + E D+ +FS+YG + NIN++RDK TG+SKG F
Sbjct: 32 IFIGGLDYDLTEGDVLSVFSQYGEIVNINLVRDKKTGKSKGFCF 75
>gi|297745915|emb|CBI15971.3| unnamed protein product [Vitis vinifera]
Length = 375
Score = 49.3 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 23/46 (50%), Positives = 33/46 (71%)
Query: 30 MFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEA 75
+FVG IP + E DL +FS+YG + ++N++RDK TG+SKG F A
Sbjct: 38 VFVGGIPFDLTEGDLLAVFSQYGEIVDVNLVRDKGTGKSKGFAFVA 83
>gi|327284806|ref|XP_003227126.1| PREDICTED: RNA-binding motif protein, X-linked 2-like [Anolis
carolinensis]
Length = 287
Score = 49.3 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 22/44 (50%), Positives = 32/44 (72%)
Query: 30 MFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
+FVG +P + E D+ +FS+YG + NIN++RDK TG+SKG F
Sbjct: 38 VFVGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCF 81
>gi|308503018|ref|XP_003113693.1| hypothetical protein CRE_26315 [Caenorhabditis remanei]
gi|308263652|gb|EFP07605.1| hypothetical protein CRE_26315 [Caenorhabditis remanei]
Length = 302
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 33/48 (68%)
Query: 26 DFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
D +++G + ++ E D+ +FS+YG V NIN++RDK TG+SKG F
Sbjct: 36 DSAWIYIGGLSYALTEGDVIAVFSQYGEVMNINLIRDKETGKSKGFAF 83
>gi|268531492|ref|XP_002630872.1| Hypothetical protein CBG02589 [Caenorhabditis briggsae]
Length = 302
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 33/48 (68%)
Query: 26 DFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
D +++G + ++ E D+ +FS+YG V NIN++RDK TG+SKG F
Sbjct: 36 DSAWIYIGGLSYALSEGDVIAVFSQYGEVMNINLIRDKDTGKSKGFAF 83
>gi|84999108|ref|XP_954275.1| ribonucleoprotein [Theileria annulata]
gi|65305273|emb|CAI73598.1| ribonucleoprotein, putative [Theileria annulata]
Length = 515
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 41/64 (64%), Gaps = 5/64 (7%)
Query: 19 LPEQPDPDF-IKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAAF 77
LP P P IK+FV +IP++ +E+DL ++F E+G V ++ V+RDK + K AF
Sbjct: 107 LPCSPAPPVEIKLFVARIPKTHEESDLRRLFEEFGVVKDVIVIRDKTSNAHKN----CAF 162
Query: 78 LKIA 81
+K+A
Sbjct: 163 VKMA 166
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 32/52 (61%)
Query: 22 QPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
+P D K+FVG +P+S+ E DL+ +F E+G + VL+D G +KG F
Sbjct: 211 EPGVDEAKLFVGSLPKSLTEEDLSSLFKEFGEAMEVFVLKDLACGGNKGCGF 262
Score = 35.0 bits (79), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 24/44 (54%)
Query: 30 MFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
+F+ IP + DL + FS +GRV + D+ T +SKG F
Sbjct: 432 LFIFHIPPQWNNNDLFRTFSPFGRVVQARIAVDRSTNRSKGYAF 475
>gi|195137574|ref|XP_002012575.1| GI11260 [Drosophila mojavensis]
gi|193906409|gb|EDW05276.1| GI11260 [Drosophila mojavensis]
Length = 177
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 31/48 (64%)
Query: 26 DFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
D +F+ P ++ E D+ +FS+YG V NIN++RD TG+SKG F
Sbjct: 26 DSAWIFIAGFPYTLSEGDIICVFSQYGEVVNINLVRDSKTGKSKGFCF 73
>gi|95007487|emb|CAJ20709.1| RNA binding protein, putative [Toxoplasma gondii RH]
gi|221480877|gb|EEE19298.1| conserved hypothetical protein [Toxoplasma gondii GT1]
gi|221501598|gb|EEE27368.1| RNA recognition motif domain-containing protein, putative
[Toxoplasma gondii VEG]
Length = 475
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 37/53 (69%), Gaps = 4/53 (7%)
Query: 28 IKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAAFLKI 80
IK+FVG++P+SM++A L +F E+G V ++RDK TG+ K +AF+K+
Sbjct: 37 IKLFVGRVPQSMEDAALRPIFEEFGEVKEAVIIRDKATGKHK----NSAFIKM 85
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 31/52 (59%)
Query: 22 QPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
+P D K+F+G IPR+M E ++ + FS YG V + V++D V KG F
Sbjct: 131 EPGQDQAKLFIGSIPRTMTEEEVRQFFSTYGTVEEVFVMKDNVQNTGKGCCF 182
>gi|237844787|ref|XP_002371691.1| CELF family protein, putative [Toxoplasma gondii ME49]
gi|211969355|gb|EEB04551.1| CELF family protein, putative [Toxoplasma gondii ME49]
Length = 475
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 37/53 (69%), Gaps = 4/53 (7%)
Query: 28 IKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAAFLKI 80
IK+FVG++P+SM++A L +F E+G V ++RDK TG+ K +AF+K+
Sbjct: 37 IKLFVGRVPQSMEDAALRPIFEEFGEVKEAVIIRDKATGKHK----NSAFIKM 85
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 31/52 (59%)
Query: 22 QPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
+P D K+F+G IPR+M E ++ + FS YG V + V++D V KG F
Sbjct: 131 EPGQDQAKLFIGSIPRTMTEDEVRQFFSTYGTVEEVFVMKDNVQNTGKGCCF 182
>gi|195118872|ref|XP_002003957.1| GI20215 [Drosophila mojavensis]
gi|195137572|ref|XP_002012574.1| GI11259 [Drosophila mojavensis]
gi|193906408|gb|EDW05275.1| GI11259 [Drosophila mojavensis]
gi|193914532|gb|EDW13399.1| GI20215 [Drosophila mojavensis]
Length = 183
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 31/48 (64%)
Query: 26 DFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
D +F+ P ++ E D+ +FS+YG V NIN++RD TG+SKG F
Sbjct: 32 DSAWIFIAGFPYTLSEGDIICVFSQYGEVVNINLVRDSKTGKSKGFCF 79
>gi|147906061|ref|NP_001079913.1| RNA binding motif protein, X-linked 2 [Xenopus laevis]
gi|34783857|gb|AAH56844.1| MGC64376 protein [Xenopus laevis]
Length = 272
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 32/48 (66%)
Query: 26 DFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
D +F+G +P + E D+ +FS+YG V NIN+ RDK +G+S+G F
Sbjct: 34 DSAWIFIGGLPFELTEGDVICVFSQYGEVVNINLARDKSSGRSRGFCF 81
>gi|50417226|gb|AAH78245.1| Rbmx2 protein [Danio rerio]
Length = 358
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 31/44 (70%)
Query: 30 MFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
+F+G P + E D+ +FS+YG + NIN++RDK TG+SKG F
Sbjct: 38 VFIGGFPYELTEGDIICVFSQYGEIANINLVRDKKTGKSKGFCF 81
>gi|395509895|ref|XP_003759222.1| PREDICTED: RNA-binding motif protein, X-linked 2-like
[Sarcophilus harrisii]
Length = 274
Score = 49.3 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 21/44 (47%), Positives = 32/44 (72%)
Query: 30 MFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
+F+G +P + E D+ +FS+YG + NIN++RDK TG+SKG F
Sbjct: 38 IFIGGLPYELTEGDVICVFSQYGEIVNINLVRDKKTGKSKGFCF 81
>gi|395754448|ref|XP_003780626.1| PREDICTED: LOW QUALITY PROTEIN: RNA-binding motif protein,
X-linked 2 [Pongo abelii]
Length = 317
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 30/43 (69%)
Query: 31 FVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
+G +P + E D+ +FS+YG + NIN++RDK TG+SKG F
Sbjct: 5 LLGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCF 47
>gi|384916047|ref|ZP_10016247.1| RNA-binding protein (RRM domain) (fragment) [Methylacidiphilum
fumariolicum SolV]
gi|384526575|emb|CCG92118.1| RNA-binding protein (RRM domain) (fragment) [Methylacidiphilum
fumariolicum SolV]
Length = 99
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 33/45 (73%)
Query: 29 KMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
+++VG +P + E DL ++F +YG+V IN++ DK+TGQS+G F
Sbjct: 5 RLYVGNLPFRISENDLRELFEQYGQVNEINLIVDKMTGQSRGFAF 49
>gi|148697138|gb|EDL29085.1| RNA binding motif protein, X-linked 2, isoform CRA_a [Mus
musculus]
Length = 296
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 30/43 (69%)
Query: 31 FVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
+G +P + E D+ +FS+YG + NIN++RDK TG+SKG F
Sbjct: 9 LIGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCF 51
>gi|71405729|ref|XP_805460.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
gi|70868876|gb|EAN83609.1| hypothetical protein, conserved [Trypanosoma cruzi]
Length = 171
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 33/52 (63%), Gaps = 1/52 (1%)
Query: 22 QPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
Q P K+FVGQ+P DE L K+FS YG V +I++LRD + +SKG F
Sbjct: 47 QLSPTAAKLFVGQLPFETDELRLYKLFSAYGNVEHIHILRD-LKNRSKGAAF 97
>gi|30679366|ref|NP_849294.1| RNA-binding protein-defense related 1 [Arabidopsis thaliana]
gi|17529054|gb|AAL38737.1| putative ribonucleoprotein [Arabidopsis thaliana]
gi|332656873|gb|AEE82273.1| RNA-binding protein-defense related 1 [Arabidopsis thaliana]
Length = 439
Score = 49.3 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 20/46 (43%), Positives = 32/46 (69%)
Query: 28 IKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
+K+FVGQIP+ M E+ L +F E+ V +N+++DK+T S+G F
Sbjct: 18 VKLFVGQIPKHMSESQLLTLFQEFAVVDEVNIIKDKITRASRGCCF 63
Score = 38.1 bits (87), Expect = 0.59, Method: Composition-based stats.
Identities = 20/51 (39%), Positives = 33/51 (64%), Gaps = 5/51 (9%)
Query: 29 KMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAAFLK 79
K+FVG +P+++ EA++ +FS+YG + ++ +LR SKG AFLK
Sbjct: 107 KLFVGMLPKNVSEAEVQSLFSKYGTIKDLQILRG-AQQTSKG----CAFLK 152
>gi|380025295|ref|XP_003696412.1| PREDICTED: RNA-binding motif protein, X-linked 2-like, partial
[Apis florea]
Length = 135
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 31/44 (70%)
Query: 30 MFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
+F+G +P + E D+ +FS++G V NIN++RDK TG+ KG F
Sbjct: 33 IFIGGLPYDLTEGDVITVFSQFGEVVNINLIRDKDTGKQKGYGF 76
>gi|340369320|ref|XP_003383196.1| PREDICTED: hypothetical protein LOC100639137 [Amphimedon
queenslandica]
Length = 295
Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 31/44 (70%)
Query: 30 MFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
+F+G + + E D+ +FS+YG + NIN++RDK TG+SKG F
Sbjct: 32 IFIGGLDYDLTEGDVLSVFSQYGEIVNINLVRDKKTGKSKGFCF 75
>gi|302845148|ref|XP_002954113.1| hypothetical protein VOLCADRAFT_118581 [Volvox carteri f.
nagariensis]
gi|300260612|gb|EFJ44830.1| hypothetical protein VOLCADRAFT_118581 [Volvox carteri f.
nagariensis]
Length = 538
Score = 48.9 bits (115), Expect = 3e-04, Method: Composition-based stats.
Identities = 22/54 (40%), Positives = 31/54 (57%)
Query: 20 PEQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
P PD IK+FVG +P+ E L +F G+V + ++ DKVT +SKG F
Sbjct: 188 PPGCSPDAIKLFVGNVPKCCTEEQLLPLFQSIGKVVELVIVHDKVTRESKGSAF 241
>gi|341892274|gb|EGT48209.1| hypothetical protein CAEBREN_24057 [Caenorhabditis brenneri]
Length = 302
Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
Query: 2 GREKRRECTYEYVRSMSLP-EQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVL 60
R RE + Y + Q D +++G + ++ E D+ +FS+YG V N+N++
Sbjct: 11 NRMNERELSLGYAGDLKKSWHQTYKDSAWIYIGGLSYALSEGDVIAVFSQYGEVMNVNLI 70
Query: 61 RDKVTGQSKGKIF 73
RDK TG+SKG F
Sbjct: 71 RDKDTGKSKGFAF 83
>gi|340054373|emb|CCC48668.1| conserved hypothetical protein [Trypanosoma vivax Y486]
Length = 177
Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Query: 18 SLPEQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
S+P Q P K+FVGQ+P DE L +FS YG V +I++LRD +SKG F
Sbjct: 51 SVPPQLSPTAAKLFVGQLPFESDEKRLYDLFSAYGTVEHIHILRDG-QNRSKGAAF 105
>gi|153874940|ref|ZP_02002958.1| RNA-binding protein [Beggiatoa sp. PS]
gi|152068596|gb|EDN67042.1| RNA-binding protein [Beggiatoa sp. PS]
Length = 89
Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 38/57 (66%), Gaps = 4/57 (7%)
Query: 28 IKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAAFLKIARAA 84
+ ++VG + SM E +L ++F+EYG + +N++ DK TGQSKG AF+++ + A
Sbjct: 1 MNIYVGNLSYSMTEEELKEIFTEYGEISTVNLITDKYTGQSKG----FAFVEMVKQA 53
>gi|344276873|ref|XP_003410230.1| PREDICTED: RNA-binding motif protein, X-linked 2-like [Loxodonta
africana]
Length = 303
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 33/48 (68%)
Query: 26 DFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
D +F+G +P + E D+ +FS+YG + NIN++R++ TG+SKG F
Sbjct: 34 DSSWIFLGGLPYELTEGDILCVFSQYGEIVNINLVRNRKTGKSKGFCF 81
>gi|156348347|ref|XP_001621815.1| hypothetical protein NEMVEDRAFT_v1g47988 [Nematostella vectensis]
gi|156208091|gb|EDO29715.1| predicted protein [Nematostella vectensis]
Length = 78
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/43 (48%), Positives = 31/43 (72%)
Query: 28 IKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKG 70
+ +FVG +P S++EADL F EYG V ++ ++ DK TG+SKG
Sbjct: 1 MNIFVGSLPFSIEEADLRGFFEEYGAVDSVKIISDKFTGRSKG 43
>gi|71411631|ref|XP_808057.1| RNA-binding protein [Trypanosoma cruzi strain CL Brener]
gi|71422043|ref|XP_812005.1| RNA-binding protein [Trypanosoma cruzi strain CL Brener]
gi|70872181|gb|EAN86206.1| RNA-binding protein, putative [Trypanosoma cruzi]
gi|70876733|gb|EAN90154.1| RNA-binding protein, putative [Trypanosoma cruzi]
Length = 118
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 30/45 (66%)
Query: 29 KMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
++FVGQ+ E D+ +F YG+V ++NVLRD+ T +SKG F
Sbjct: 7 RLFVGQLNFDATEEDVCALFDFYGKVLHVNVLRDRTTNRSKGSAF 51
>gi|294942558|ref|XP_002783584.1| RNA-binding motif protein, X-linked, putative [Perkinsus marinus
ATCC 50983]
gi|239896081|gb|EER15380.1| RNA-binding motif protein, X-linked, putative [Perkinsus marinus
ATCC 50983]
Length = 191
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 34/50 (68%)
Query: 26 DFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEA 75
D +++G + R + E DL +FS++G + ++N++RDK TG+SKG F A
Sbjct: 37 DSAYLYIGNLDRGLTEGDLITVFSQFGEILDVNLVRDKETGKSKGFGFLA 86
>gi|148908208|gb|ABR17219.1| unknown [Picea sitchensis]
Length = 296
Score = 48.9 bits (115), Expect = 4e-04, Method: Composition-based stats.
Identities = 28/67 (41%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 21 EQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAAFLKI 80
E+ + K++VG +PRS D A LT +F E+G V + V+R++ TG S+G F I
Sbjct: 95 EKSPSNRTKLYVGNLPRSCDSAQLTHLFQEFGTVESAEVVRNEETGLSRGFAFVTMSTVI 154
Query: 81 -ARAAIE 86
A+AAIE
Sbjct: 155 EAKAAIE 161
>gi|426258338|ref|XP_004022771.1| PREDICTED: RNA-binding motif protein, X-linked 2-like [Ovis aries]
Length = 461
Score = 48.9 bits (115), Expect = 4e-04, Method: Composition-based stats.
Identities = 21/44 (47%), Positives = 32/44 (72%)
Query: 30 MFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
+F+G +P + E D+ +FS+YG + NIN++RDK TG+SKG F
Sbjct: 136 IFLGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCF 179
>gi|414587608|tpg|DAA38179.1| TPA: hypothetical protein ZEAMMB73_126317 [Zea mays]
Length = 750
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 33/50 (66%)
Query: 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
D D +++G +P +MD+A L +FS++G + V++D+ TGQSKG F
Sbjct: 423 DYDETNLYIGYLPPTMDDAGLVSLFSQFGEIVMAKVIKDRNTGQSKGYGF 472
>gi|410056965|ref|XP_003954131.1| PREDICTED: LOW QUALITY PROTEIN: RNA-binding motif protein,
X-linked 2, partial [Pan troglodytes]
Length = 323
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 30/43 (69%)
Query: 31 FVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
+G +P + E D+ +FS+YG + NIN++RDK TG+SKG F
Sbjct: 11 LLGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCF 53
>gi|125590156|gb|EAZ30506.1| hypothetical protein OsJ_14553 [Oryza sativa Japonica Group]
Length = 684
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 33/48 (68%)
Query: 26 DFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
D +++G +P ++D++ L +FS++G + V+RD++TGQSKG F
Sbjct: 337 DETNLYIGYLPPTLDDSGLIGLFSQFGEIVMAKVIRDRITGQSKGYGF 384
>gi|221129809|ref|XP_002164481.1| PREDICTED: RNA-binding motif protein, X-linked 2-like [Hydra
magnipapillata]
Length = 255
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 31/44 (70%)
Query: 30 MFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
+F+G +P + E D+ +FS+YG + NIN++RDK TG+ KG F
Sbjct: 39 IFIGGLPYDLTEGDVLAVFSQYGEIVNINLVRDKKTGKFKGYGF 82
>gi|241605858|ref|XP_002406132.1| RNA recognition motif-containing protein [Ixodes scapularis]
gi|215502625|gb|EEC12119.1| RNA recognition motif-containing protein [Ixodes scapularis]
Length = 114
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 32/48 (66%)
Query: 26 DFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
D +FVG + + E D+ +FS++G + NIN++RDK TG+SKG F
Sbjct: 34 DSAWIFVGGLDYELTEGDIICVFSQFGEIVNINLIRDKKTGKSKGYCF 81
>gi|156083038|ref|XP_001609003.1| RNA recognition motif. (a.k.a. RRM, RBD, or RNP) domain
containing protein [Babesia bovis T2Bo]
gi|154796253|gb|EDO05435.1| RNA recognition motif. (a.k.a. RRM, RBD, or RNP) domain
containing protein [Babesia bovis]
Length = 420
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 39/63 (61%), Gaps = 1/63 (1%)
Query: 12 EYVRSMSLPEQPDPDF-IKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKG 70
++ ++ P P P IK+FV +IP++ +EA++ KMF E+G V ++ ++RDK T K
Sbjct: 7 DHTTEVTYPCAPAPPVEIKLFVARIPKTYEEAEIRKMFEEFGDVKDVVIIRDKATNAHKC 66
Query: 71 KIF 73
F
Sbjct: 67 CAF 69
Score = 38.9 bits (89), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 39/64 (60%), Gaps = 5/64 (7%)
Query: 18 SLPEQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAAF 77
SL +P + K+FVG IP++ +E + ++F YG + +I +++D+ G KG AF
Sbjct: 114 SLVGEPGVNDAKLFVGSIPKNAEEDLIREIFGPYGTLEDIFIMKDQ-NGAGKG----CAF 168
Query: 78 LKIA 81
+K+A
Sbjct: 169 VKMA 172
Score = 38.5 bits (88), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 25/49 (51%)
Query: 25 PDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
P +F+ IP DL FS++G++ + + D+ TG+ KG F
Sbjct: 284 PPGANLFIFHIPNEWTHHDLVHTFSQFGKILSSRIASDRSTGRHKGYAF 332
>gi|32489985|emb|CAE05015.1| OSJNBa0044M19.2 [Oryza sativa Japonica Group]
Length = 650
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 33/48 (68%)
Query: 26 DFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
D +++G +P ++D++ L +FS++G + V+RD++TGQSKG F
Sbjct: 305 DETNLYIGYLPPTLDDSGLIGLFSQFGEIVMAKVIRDRITGQSKGYGF 352
>gi|195156397|ref|XP_002019086.1| GL26176 [Drosophila persimilis]
gi|194115239|gb|EDW37282.1| GL26176 [Drosophila persimilis]
Length = 158
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 31/48 (64%)
Query: 26 DFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
D +FV P ++ E D+ +FS+YG V NIN++RD TG+SKG F
Sbjct: 33 DSAWIFVAGFPYNLSEGDIICVFSQYGEVVNINLVRDSKTGKSKGFCF 80
>gi|125548044|gb|EAY93866.1| hypothetical protein OsI_15642 [Oryza sativa Indica Group]
Length = 684
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 33/48 (68%)
Query: 26 DFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
D +++G +P ++D++ L +FS++G + V+RD++TGQSKG F
Sbjct: 337 DETNLYIGYLPPTLDDSGLIGLFSQFGEIVMAKVIRDRITGQSKGYGF 384
>gi|125983973|ref|XP_001355751.1| GA10331 [Drosophila pseudoobscura pseudoobscura]
gi|54644068|gb|EAL32810.1| GA10331 [Drosophila pseudoobscura pseudoobscura]
Length = 157
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 31/48 (64%)
Query: 26 DFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
D +FV P ++ E D+ +FS+YG V NIN++RD TG+SKG F
Sbjct: 33 DSAWIFVAGFPYNLSEGDIICVFSQYGEVVNINLVRDSKTGKSKGFCF 80
>gi|401409201|ref|XP_003884049.1| CUG-BP-and ETR-3-like factor 3, related [Neospora caninum
Liverpool]
gi|325118466|emb|CBZ54017.1| CUG-BP-and ETR-3-like factor 3, related [Neospora caninum
Liverpool]
Length = 678
Score = 48.9 bits (115), Expect = 4e-04, Method: Composition-based stats.
Identities = 26/69 (37%), Positives = 41/69 (59%), Gaps = 4/69 (5%)
Query: 16 SMSLPEQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEA 75
+ LP P IK+FVG++P+++DE L +F +G V + V+RDK T + K +
Sbjct: 118 TQPLPHNAPPVEIKLFVGRVPQTVDEDALRPIFEGFGDVREVFVIRDKNTLKHK----NS 173
Query: 76 AFLKIARAA 84
AF+K+A A
Sbjct: 174 AFVKMASLA 182
Score = 47.8 bits (112), Expect = 8e-04, Method: Composition-based stats.
Identities = 22/48 (45%), Positives = 28/48 (58%)
Query: 26 DFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
D K+FVG IPR+M E +L F YG V + V++D TG KG F
Sbjct: 231 DQAKLFVGSIPRTMSEDELRVFFQTYGTVEEVFVMKDSATGTGKGCAF 278
Score = 35.8 bits (81), Expect = 3.8, Method: Composition-based stats.
Identities = 17/53 (32%), Positives = 29/53 (54%)
Query: 21 EQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
E P +FV IP +ADL + FS +G + + ++ DKV+ +++G F
Sbjct: 433 ETAGPPGANVFVFHIPNEWTKADLIQTFSGFGNIVSCHIAVDKVSHRNRGFAF 485
>gi|405960385|gb|EKC26312.1| RNA-binding motif protein, X-linked 2 [Crassostrea gigas]
Length = 233
Score = 48.5 bits (114), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 32/48 (66%)
Query: 26 DFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
D +F+G +P + E D+ +FS+YG + NIN++RD TG+S+G F
Sbjct: 22 DSAWVFIGGLPYDLTEGDVIAVFSQYGELVNINLVRDGKTGKSRGFCF 69
>gi|291400895|ref|XP_002716702.1| PREDICTED: RNA binding motif protein, X-linked 2 [Oryctolagus
cuniculus]
Length = 198
Score = 48.5 bits (114), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 33/48 (68%)
Query: 26 DFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
D +FVG +P + E D+ +FS+YG + NI+++RDK TG+S+G F
Sbjct: 33 DSAWVFVGGLPYELTEGDILCVFSQYGEIVNIHLVRDKKTGKSRGFGF 80
>gi|224068763|ref|XP_002302819.1| predicted protein [Populus trichocarpa]
gi|222844545|gb|EEE82092.1| predicted protein [Populus trichocarpa]
Length = 396
Score = 48.5 bits (114), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 31/46 (67%)
Query: 28 IKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
+K+FVGQ+P+ M E ++ MF E+ V +N+++DK T S+G F
Sbjct: 19 VKLFVGQVPKHMTEDEVLAMFKEFALVDEVNIIKDKTTRASRGCCF 64
Score = 42.4 bits (98), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 39/63 (61%), Gaps = 10/63 (15%)
Query: 29 KMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAAFLKI-----ARA 83
K+FVG +P+++ EA+L+ +FS+YG + ++ +LR SKG AFLK A A
Sbjct: 108 KLFVGMLPKNVSEAELSDLFSKYGIIKDLQILRGSQQ-TSKG----CAFLKYETKEQAHA 162
Query: 84 AIE 86
A+E
Sbjct: 163 ALE 165
>gi|189218303|ref|YP_001938945.1| RNA-binding protein (RRM domain) [Methylacidiphilum infernorum
V4]
gi|189185161|gb|ACD82346.1| RNA-binding protein (RRM domain) [Methylacidiphilum infernorum
V4]
Length = 143
Score = 48.5 bits (114), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 33/45 (73%)
Query: 29 KMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
+++VG +P + E DL ++F +YG+V IN++ DK+TGQS+G F
Sbjct: 48 RLYVGNLPFRISENDLREIFEQYGQVNEINLIVDKMTGQSRGFAF 92
>gi|297744002|emb|CBI36972.3| unnamed protein product [Vitis vinifera]
Length = 672
Score = 48.5 bits (114), Expect = 4e-04, Method: Composition-based stats.
Identities = 21/55 (38%), Positives = 37/55 (67%), Gaps = 4/55 (7%)
Query: 27 FIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAAFLKIA 81
F+K++VG +PR++ E D+ +F E+G++ + +L+DK TGQ + E F+K A
Sbjct: 90 FVKLYVGCVPRTVTEEDIRSLFEEHGKIVEVVLLKDKRTGQQQ----ECCFVKYA 140
>gi|432093575|gb|ELK25559.1| RNA-binding motif protein, X-linked 2 [Myotis davidii]
Length = 337
Score = 48.5 bits (114), Expect = 5e-04, Method: Composition-based stats.
Identities = 21/44 (47%), Positives = 32/44 (72%)
Query: 30 MFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
+F+G +P + E D+ +FS+YG + NIN++RDK TG+SKG F
Sbjct: 38 IFLGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCF 81
>gi|312375028|gb|EFR22477.1| hypothetical protein AND_15210 [Anopheles darlingi]
Length = 295
Score = 48.5 bits (114), Expect = 5e-04, Method: Composition-based stats.
Identities = 24/74 (32%), Positives = 42/74 (56%), Gaps = 6/74 (8%)
Query: 3 REKRRECTYEYVRSMSLPEQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRD 62
R KR + +Y + P+ D +++ +PR+++E L +F +YG + N+LRD
Sbjct: 168 RNKRLKVSY------ARPQSDDIKETNLYITNLPRTINEDQLDIIFGKYGTIVQKNILRD 221
Query: 63 KVTGQSKGKIFEAA 76
K+TGQ +G F +A
Sbjct: 222 KLTGQPRGVAFVSA 235
>gi|195384987|ref|XP_002051191.1| GJ13600 [Drosophila virilis]
gi|194147648|gb|EDW63346.1| GJ13600 [Drosophila virilis]
Length = 181
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 31/48 (64%)
Query: 26 DFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
D +F+ P ++ E D+ +FS+YG + NIN++RD TG+SKG F
Sbjct: 32 DSAWIFIAGFPYTLSEGDIICVFSQYGEIVNINLVRDSKTGKSKGFCF 79
>gi|149745621|ref|XP_001500162.1| PREDICTED: RNA-binding motif protein, X-linked 2-like [Equus
caballus]
Length = 327
Score = 48.5 bits (114), Expect = 5e-04, Method: Composition-based stats.
Identities = 21/44 (47%), Positives = 32/44 (72%)
Query: 30 MFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
+F+G +P + E D+ +FS+YG + NIN++RDK TG+SKG F
Sbjct: 38 IFLGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCF 81
>gi|32482057|gb|AAP84375.1| mutant FCA-D1 [Triticum aestivum]
Length = 284
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 33/47 (70%)
Query: 27 FIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
++K+FVG +PR+ +E D+ +F ++G V + ++RD+ TG+ +G F
Sbjct: 124 YVKLFVGSVPRTANEDDVRPLFEDHGDVLEVALIRDRKTGEQQGCCF 170
>gi|68448493|ref|NP_001020337.1| RNA-binding motif protein, X-linked 2 [Danio rerio]
gi|67678309|gb|AAH96985.1| RNA binding motif protein, X-linked 2 [Danio rerio]
Length = 434
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 31/44 (70%)
Query: 30 MFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
+F+G P + E D+ +FS+YG + NIN++RDK TG+SKG F
Sbjct: 38 VFIGGFPYELTEGDIICVFSQYGEIANINLVRDKKTGKSKGFCF 81
>gi|403220835|dbj|BAM38968.1| ribonucleoprotein [Theileria orientalis strain Shintoku]
Length = 604
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 43/79 (54%), Gaps = 5/79 (6%)
Query: 4 EKRRECTYEYVRSMSLPEQPDPDF-IKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRD 62
E+R E E LP P P IK+F+ +IPR E D+ K+F E+G V ++ +++D
Sbjct: 62 EERAEAQPEIKPLEGLPCSPAPPASIKLFIARIPRDHKEEDIRKLFEEFGTVEDVTIIKD 121
Query: 63 KVTGQSKGKIFEAAFLKIA 81
K T K AF+K+A
Sbjct: 122 KATNVPK----NCAFVKMA 136
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 30/52 (57%)
Query: 22 QPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
+P D K+FVG +PRS E DL +F +YG +++D +G +KG F
Sbjct: 181 EPGVDTAKLFVGSLPRSFSEQDLQDLFKDYGDAVETFLMKDMNSGGNKGCGF 232
Score = 39.3 bits (90), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 26/44 (59%)
Query: 30 MFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
+FV IP + +DL + FS +GRV ++ D+ T +SKG F
Sbjct: 402 LFVFHIPSQWNNSDLFRTFSPFGRVVKAKIVFDRATNRSKGYAF 445
>gi|260814928|ref|XP_002602165.1| hypothetical protein BRAFLDRAFT_268357 [Branchiostoma floridae]
gi|229287472|gb|EEN58177.1| hypothetical protein BRAFLDRAFT_268357 [Branchiostoma floridae]
Length = 224
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Query: 25 PDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAAFLK 79
P ++V +P ++ DL K+F +YG+V + V+RDK+T QSKG F FLK
Sbjct: 7 PSKTTVYVSNLPFALTNNDLHKIFEKYGKVVKVTVMRDKITRQSKGVAF-VLFLK 60
>gi|159474566|ref|XP_001695396.1| RNA-binding protein [Chlamydomonas reinhardtii]
gi|158275879|gb|EDP01654.1| RNA-binding protein [Chlamydomonas reinhardtii]
Length = 704
Score = 48.5 bits (114), Expect = 5e-04, Method: Composition-based stats.
Identities = 22/49 (44%), Positives = 31/49 (63%)
Query: 25 PDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
PD +K+FVG IP+S E L +F G+V + ++ DKVT +SKG F
Sbjct: 317 PDAMKLFVGNIPKSCTEDQLLPLFQSIGKVVELVIVYDKVTHESKGSAF 365
>gi|154285756|ref|XP_001543673.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
gi|150407314|gb|EDN02855.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
Length = 232
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 35/54 (64%), Gaps = 4/54 (7%)
Query: 26 DFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAAFLK 79
D +++G +P + E D+ +FS+YG ++N++RDK TG+SKG AFLK
Sbjct: 34 DTAYIYIGSLPSDLSEGDILTIFSQYGEPVHLNLVRDKETGKSKG----FAFLK 83
>gi|242036065|ref|XP_002465427.1| hypothetical protein SORBIDRAFT_01g038690 [Sorghum bicolor]
gi|241919281|gb|EER92425.1| hypothetical protein SORBIDRAFT_01g038690 [Sorghum bicolor]
Length = 727
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 33/50 (66%)
Query: 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
D D +++G +P +MD+A L +FS++G + V++D+ TGQSKG F
Sbjct: 424 DYDETNLYIGYLPPTMDDAGLVSLFSQFGDIVMAKVIKDRNTGQSKGYGF 473
>gi|71403847|ref|XP_804682.1| RNA-binding protein [Trypanosoma cruzi strain CL Brener]
gi|71403853|ref|XP_804685.1| RNA-binding protein [Trypanosoma cruzi strain CL Brener]
gi|71408091|ref|XP_806469.1| RNA-binding protein [Trypanosoma cruzi strain CL Brener]
gi|71408093|ref|XP_806470.1| RNA-binding protein [Trypanosoma cruzi strain CL Brener]
gi|71408095|ref|XP_806471.1| RNA-binding protein [Trypanosoma cruzi strain CL Brener]
gi|70867781|gb|EAN82831.1| RNA-binding protein, putative [Trypanosoma cruzi]
gi|70867784|gb|EAN82834.1| RNA-binding protein, putative [Trypanosoma cruzi]
gi|70870229|gb|EAN84618.1| RNA-binding protein, putative [Trypanosoma cruzi]
gi|70870230|gb|EAN84619.1| RNA-binding protein, putative [Trypanosoma cruzi]
gi|70870231|gb|EAN84620.1| RNA-binding protein, putative [Trypanosoma cruzi]
Length = 118
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 30/45 (66%)
Query: 29 KMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
++FVGQ+ E D+ +F YG+V ++N+LRD+ T +SKG F
Sbjct: 7 RLFVGQLNFDATEEDVCALFDFYGKVLHVNILRDRTTNRSKGSAF 51
>gi|354473614|ref|XP_003499029.1| PREDICTED: RNA-binding motif protein, X-linked 2-like [Cricetulus
griseus]
Length = 356
Score = 48.5 bits (114), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 29/42 (69%)
Query: 32 VGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
G +P + E D+ +FS+YG + NIN++RDK TG+SKG F
Sbjct: 51 TGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCF 92
>gi|357123042|ref|XP_003563222.1| PREDICTED: zinc finger CCCH domain-containing protein 25-like
[Brachypodium distachyon]
Length = 385
Score = 48.1 bits (113), Expect = 6e-04, Method: Composition-based stats.
Identities = 23/50 (46%), Positives = 34/50 (68%)
Query: 26 DFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEA 75
D +FVG +P + E DL +F++YG V ++N++RDK TG+SKG F A
Sbjct: 34 DSAYVFVGGVPYDLTEGDLLAVFAQYGEVVDVNLVRDKATGKSKGFAFVA 83
>gi|225554554|gb|EEH02851.1| RNA binding domain-containing protein [Ajellomyces capsulatus
G186AR]
Length = 276
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 35/54 (64%), Gaps = 4/54 (7%)
Query: 26 DFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAAFLK 79
D +++G +P + E D+ +FS+YG ++N++RDK TG+SKG AFLK
Sbjct: 31 DTAYIYIGSLPSDLSEGDILTIFSQYGEPVHLNLVRDKETGKSKG----FAFLK 80
>gi|115442121|ref|NP_001045340.1| Os01g0938200 [Oryza sativa Japonica Group]
gi|20160777|dbj|BAB89718.1| putative ribonucleoprotein [Oryza sativa Japonica Group]
gi|20161317|dbj|BAB90241.1| putative ribonucleoprotein [Oryza sativa Japonica Group]
gi|113534871|dbj|BAF07254.1| Os01g0938200 [Oryza sativa Japonica Group]
gi|215704529|dbj|BAG94162.1| unnamed protein product [Oryza sativa Japonica Group]
gi|218189701|gb|EEC72128.1| hypothetical protein OsI_05123 [Oryza sativa Indica Group]
gi|222619840|gb|EEE55972.1| hypothetical protein OsJ_04706 [Oryza sativa Japonica Group]
Length = 460
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 30/46 (65%)
Query: 28 IKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
+K+FVGQ+P+ M EA+L MF E V + V++DK T S+G F
Sbjct: 40 VKLFVGQVPKHMTEAELLAMFQEVAIVDEVTVIKDKATKASRGCCF 85
Score = 40.8 bits (94), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 36/63 (57%), Gaps = 9/63 (14%)
Query: 29 KMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAAFLKI-----ARA 83
K+F+G +P+++ + +LT +FS+YG + ++ +LR G AFLK A A
Sbjct: 129 KLFIGMLPKNVTDTELTDLFSKYGNIKDLQILRGSQQTSKAG----CAFLKYETKEQAVA 184
Query: 84 AIE 86
AIE
Sbjct: 185 AIE 187
Score = 38.5 bits (88), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 24/45 (53%)
Query: 25 PDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSK 69
P +F+ IP+ + DL+ F +GRV + V DK TG SK
Sbjct: 371 PPGANLFIYHIPQDYGDQDLSNAFQRFGRVLSAKVFVDKATGSSK 415
>gi|444517993|gb|ELV11894.1| RNA-binding motif protein, X-linked 2, partial [Tupaia chinensis]
Length = 323
Score = 48.1 bits (113), Expect = 6e-04, Method: Composition-based stats.
Identities = 22/44 (50%), Positives = 32/44 (72%)
Query: 30 MFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
+F+G +P + E D+ +FS+YG V NIN++RDK TG+SKG F
Sbjct: 35 IFLGGLPYELTEGDIICVFSQYGEVVNINLVRDKKTGKSKGFCF 78
>gi|45382283|ref|NP_990164.1| ELAV-like protein 1 [Gallus gallus]
gi|5738249|gb|AAD50313.1|AF176673_1 RNA-binding protein HuA [Gallus gallus]
Length = 326
Score = 48.1 bits (113), Expect = 6e-04, Method: Composition-based stats.
Identities = 22/55 (40%), Positives = 34/55 (61%), Gaps = 3/55 (5%)
Query: 22 QPDPDFIK---MFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
+P + IK +++ +PRSM + D+ MFS +GR+ N VL D+ TG S+G F
Sbjct: 97 RPSSEVIKDANLYISGLPRSMTQKDVVDMFSRFGRIINSRVLVDQTTGLSRGVAF 151
Score = 35.4 bits (80), Expect = 4.2, Method: Composition-based stats.
Identities = 16/44 (36%), Positives = 26/44 (59%)
Query: 30 MFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
+ V +P++M + +L +FS G V + ++RDKV G S G F
Sbjct: 22 LIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGF 65
>gi|240277136|gb|EER40645.1| RNA binding domain-containing protein [Ajellomyces capsulatus
H143]
gi|325093957|gb|EGC47267.1| RNA binding domain-containing protein [Ajellomyces capsulatus
H88]
Length = 276
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 35/54 (64%), Gaps = 4/54 (7%)
Query: 26 DFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAAFLK 79
D +++G +P + E D+ +FS+YG ++N++RDK TG+SKG AFLK
Sbjct: 31 DTAYIYIGSLPSDLSEGDILTIFSQYGEPVHLNLVRDKETGKSKG----FAFLK 80
>gi|410927510|ref|XP_003977185.1| PREDICTED: ELAV-like protein 1-like [Takifugu rubripes]
Length = 341
Score = 48.1 bits (113), Expect = 6e-04, Method: Composition-based stats.
Identities = 22/55 (40%), Positives = 34/55 (61%), Gaps = 3/55 (5%)
Query: 22 QPDPDFIK---MFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
+P D IK +++ +P+SM + D+ MFS +GR+ N VL D+ TG S+G F
Sbjct: 112 RPSSDTIKDANLYISGLPKSMTQKDVEDMFSRFGRIINSRVLVDQATGASRGVAF 166
Score = 35.8 bits (81), Expect = 3.7, Method: Composition-based stats.
Identities = 15/44 (34%), Positives = 26/44 (59%)
Query: 30 MFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
+ V +P++M + +L +FS G V + ++RDK+ G S G F
Sbjct: 37 LIVNYLPQNMSQEELRSLFSSIGEVESAKLIRDKIAGHSLGYGF 80
>gi|49658982|emb|CAE01482.1| HUR [Tetraodon nigroviridis]
Length = 325
Score = 48.1 bits (113), Expect = 6e-04, Method: Composition-based stats.
Identities = 22/55 (40%), Positives = 35/55 (63%), Gaps = 3/55 (5%)
Query: 22 QPDPDFIK---MFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
+P D IK +++ +P+SM + D+ MFS++GR+ N VL D+ TG S+G F
Sbjct: 96 RPSSDTIKDANLYISGLPKSMTQKDVEDMFSQFGRIINSRVLVDQATGVSRGVAF 150
Score = 36.2 bits (82), Expect = 2.8, Method: Composition-based stats.
Identities = 16/44 (36%), Positives = 26/44 (59%)
Query: 30 MFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
+ V +P++M + +L +FS G V + ++RDKV G S G F
Sbjct: 21 LIVNYLPQNMSQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGF 64
>gi|27734072|ref|NP_775552.1| RNA-binding motif protein, X-linked 2 [Mus musculus]
gi|61230302|sp|Q8R0F5.1|RBMX2_MOUSE RecName: Full=RNA-binding motif protein, X-linked 2
gi|20071694|gb|AAH26976.1| RNA binding motif protein, X-linked 2 [Mus musculus]
gi|26345092|dbj|BAC36195.1| unnamed protein product [Mus musculus]
gi|74207503|dbj|BAE40004.1| unnamed protein product [Mus musculus]
Length = 326
Score = 48.1 bits (113), Expect = 6e-04, Method: Composition-based stats.
Identities = 22/44 (50%), Positives = 32/44 (72%)
Query: 30 MFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
+FVG +P + E D+ +FS+YG + NIN++RDK TG+SKG F
Sbjct: 38 IFVGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCF 81
>gi|326520181|dbj|BAK04015.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 404
Score = 48.1 bits (113), Expect = 6e-04, Method: Composition-based stats.
Identities = 22/46 (47%), Positives = 33/46 (71%)
Query: 30 MFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEA 75
+FVG +P + E DL +F++YG V ++N++RDK TG+SKG F A
Sbjct: 38 VFVGGVPFDLTEGDLLAVFAQYGEVVDVNLVRDKATGKSKGFAFVA 83
>gi|195997877|ref|XP_002108807.1| hypothetical protein TRIADDRAFT_17435 [Trichoplax adhaerens]
gi|190589583|gb|EDV29605.1| hypothetical protein TRIADDRAFT_17435, partial [Trichoplax
adhaerens]
Length = 119
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 31/46 (67%)
Query: 30 MFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEA 75
+F+G + + E D+ +FS+YG V +IN +RDK TG++KG F A
Sbjct: 35 VFIGGLAYGLTEGDIITVFSQYGEVVDINYIRDKKTGKTKGYCFLA 80
>gi|302832507|ref|XP_002947818.1| hypothetical protein VOLCADRAFT_88093 [Volvox carteri f.
nagariensis]
gi|300267166|gb|EFJ51351.1| hypothetical protein VOLCADRAFT_88093 [Volvox carteri f.
nagariensis]
Length = 1966
Score = 48.1 bits (113), Expect = 7e-04, Method: Composition-based stats.
Identities = 20/50 (40%), Positives = 30/50 (60%)
Query: 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
+PD +K+F+G IPR E L +F G+V + ++ DKVT + KG F
Sbjct: 517 NPDVVKLFIGNIPRGCTEKHLLALFQSIGKVVELVIMYDKVTREPKGSAF 566
Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats.
Identities = 25/63 (39%), Positives = 40/63 (63%), Gaps = 1/63 (1%)
Query: 25 PDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAAF-LKIARA 83
P ++FVG +PR+ EA L + F + G V ++ VLRD+ +G+S+G F + L+ A A
Sbjct: 27 PPLHRLFVGSVPRTAVEATLREYFEQCGVVRDLAVLRDRTSGKSRGCAFVSYLTLEEAEA 86
Query: 84 AIE 86
AI+
Sbjct: 87 AIQ 89
Score = 36.2 bits (82), Expect = 2.4, Method: Composition-based stats.
Identities = 13/32 (40%), Positives = 23/32 (71%)
Query: 30 MFVGQIPRSMDEADLTKMFSEYGRVYNINVLR 61
+F ++ RS E D+ ++FS +G+VY+IN+ R
Sbjct: 234 LFFAKVLRSTTEDDVRRLFSRFGKVYDINLFR 265
>gi|345807592|ref|XP_549256.3| PREDICTED: RNA-binding motif protein, X-linked 2 [Canis lupus
familiaris]
Length = 336
Score = 48.1 bits (113), Expect = 7e-04, Method: Composition-based stats.
Identities = 21/44 (47%), Positives = 32/44 (72%)
Query: 30 MFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
+F+G +P + E D+ +FS+YG + NIN++RDK TG+SKG F
Sbjct: 38 IFLGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCF 81
>gi|302819965|ref|XP_002991651.1| hypothetical protein SELMODRAFT_451447 [Selaginella
moellendorffii]
gi|300140500|gb|EFJ07222.1| hypothetical protein SELMODRAFT_451447 [Selaginella
moellendorffii]
Length = 480
Score = 48.1 bits (113), Expect = 7e-04, Method: Composition-based stats.
Identities = 20/53 (37%), Positives = 35/53 (66%), Gaps = 1/53 (1%)
Query: 27 FIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAAFLK 79
++K+FVG +PR++ E + MF EYG V + +++D+ TG +G +F F+K
Sbjct: 41 YVKLFVGSVPRTITEQQVRSMFEEYGEVLEVAIIKDRRTGHQQG-MFCCCFVK 92
Score = 35.8 bits (81), Expect = 3.7, Method: Composition-based stats.
Identities = 25/62 (40%), Positives = 39/62 (62%), Gaps = 10/62 (16%)
Query: 29 KMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAAFLK-----IARA 83
K+FVG + + E ++ ++FS YGRV +I V+RD+ QS+G AF+K +A+A
Sbjct: 138 KLFVGCLNKHASEREIEEVFSPYGRVDDIYVMRDE-HKQSRG----CAFIKYPSRDMAQA 192
Query: 84 AI 85
AI
Sbjct: 193 AI 194
>gi|294875642|ref|XP_002767415.1| RNA-binding protein, putative [Perkinsus marinus ATCC 50983]
gi|239868982|gb|EER00133.1| RNA-binding protein, putative [Perkinsus marinus ATCC 50983]
Length = 716
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 42/70 (60%), Gaps = 1/70 (1%)
Query: 14 VRSMSLPEQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
+ S SLP + D K+F+G +P S D+ LT M ++YG + + NV+ D+ TG+++G +
Sbjct: 171 LSSSSLPYRVPDDPCKVFIGGLPPSADDDSLTDMLAQYGTLVDCNVMIDRGTGRNRGFAY 230
Query: 74 EAAFLKIARA 83
A F A A
Sbjct: 231 -ATFSTPAGA 239
Score = 41.6 bits (96), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 31/45 (68%)
Query: 26 DFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKG 70
D K+F+G +P+S D+ +T+ S+YG V ++ V+ D+ TG+ +G
Sbjct: 317 DPCKVFLGGLPQSADQNRVTEYLSQYGDVQDVTVMYDRNTGRHRG 361
Score = 36.2 bits (82), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 30/45 (66%)
Query: 29 KMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
K+F+G +P + + +L + FS++G + + V+ D +TG+S+G F
Sbjct: 29 KLFLGGLPYNCGQRELKEYFSQFGDIDDATVMIDHLTGRSRGFGF 73
>gi|145552619|ref|XP_001461985.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124429822|emb|CAK94612.1| unnamed protein product [Paramecium tetraurelia]
Length = 304
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 34/46 (73%)
Query: 30 MFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEA 75
+F+ + +M+E D+ +FS+YG + +++++RDK+TG+SKG F A
Sbjct: 31 IFIANLNYAMNEGDIAIVFSQYGEIVDVHLVRDKITGKSKGFCFLA 76
>gi|395545903|ref|XP_003775408.1| PREDICTED: LOW QUALITY PROTEIN: RNA-binding motif protein,
X-linked 2 [Sarcophilus harrisii]
Length = 310
Score = 47.8 bits (112), Expect = 7e-04, Method: Composition-based stats.
Identities = 21/44 (47%), Positives = 32/44 (72%)
Query: 30 MFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
+F+G +P + E D+ +FS+YG + NIN++RDK TG+SKG F
Sbjct: 19 VFLGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCF 62
>gi|326528321|dbj|BAJ93342.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 467
Score = 47.8 bits (112), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 31/50 (62%)
Query: 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
D +K+FVGQ+P+ M EA+L MF + V + V+RDK T S+G F
Sbjct: 43 DESSVKLFVGQVPKLMTEAELAAMFRDVAIVDEVTVIRDKATKASRGCCF 92
Score = 42.0 bits (97), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 47/101 (46%), Gaps = 21/101 (20%)
Query: 3 REKRRECTYEYVRSMSLPEQPDPDFIK------------MFVGQIPRSMDEADLTKMFSE 50
RE+ + Y +LP P P +K +F+G +P+++ + ++T +FS+
Sbjct: 98 REEADKAVNAYHNKRTLPGAPSPLQVKYADGELERLEHKLFIGMLPKNVTDVEMTDLFSQ 157
Query: 51 YGRVYNINVLRDKVTGQSKGKIFEAAFLKI-----ARAAIE 86
YG + ++ +LR G AFLK A AAIE
Sbjct: 158 YGNIKDLQILRGSQQTSKAG----CAFLKYETKEQAVAAIE 194
Score = 39.3 bits (90), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 25/50 (50%)
Query: 20 PEQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSK 69
P+ P +F+ IP+ + DL F +GRV + V DK TG SK
Sbjct: 373 PQLEGPPGANLFIYHIPQEFGDQDLAHAFQSFGRVLSAKVFVDKATGASK 422
>gi|413944942|gb|AFW77591.1| hypothetical protein ZEAMMB73_325553 [Zea mays]
Length = 456
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 30/46 (65%)
Query: 28 IKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
+K+FVGQ+P+ M EA+L MF V + V+RD+VT S+G F
Sbjct: 36 VKLFVGQVPKQMSEAELAAMFRSVALVDEVTVIRDRVTRVSRGCCF 81
Score = 41.6 bits (96), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 36/63 (57%), Gaps = 9/63 (14%)
Query: 29 KMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAAFLKI-----ARA 83
K+FVG +P+++ A++T +FS+YG + ++ +LR G AFLK A A
Sbjct: 125 KLFVGMLPKNVTHAEMTDLFSKYGNIKDLQILRGSQQTSKAG----CAFLKYETKEQAVA 180
Query: 84 AIE 86
AIE
Sbjct: 181 AIE 183
Score = 38.9 bits (89), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 25/50 (50%)
Query: 20 PEQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSK 69
P+ P +F+ IP+ + DL F +GRV + V DK TG SK
Sbjct: 362 PQIEGPPGANLFIYHIPQEFGDHDLASAFHSFGRVLSAKVFVDKATGVSK 411
>gi|356500250|ref|XP_003518946.1| PREDICTED: CUGBP Elav-like family member 1-like [Glycine max]
Length = 426
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 30/46 (65%)
Query: 28 IKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
+K+FVGQ+P+ M E ++ MF E V +N++RDK T S+G F
Sbjct: 15 VKLFVGQVPKRMSEDEVLAMFKELALVDEVNIIRDKATRASRGCCF 60
Score = 38.5 bits (88), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 33/51 (64%), Gaps = 5/51 (9%)
Query: 29 KMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAAFLK 79
K+F+G +P+++ E +++ +FS+YG + ++ +LR SKG AFLK
Sbjct: 104 KLFIGMLPKNISEDEVSNLFSKYGTIKDLQILRGS-QHTSKG----CAFLK 149
Score = 38.1 bits (87), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 25/45 (55%)
Query: 25 PDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSK 69
P +F+ IP+ + +LT F +GRV + + DKVTG SK
Sbjct: 338 PPGANLFIYHIPQEYGDQELTTAFQPFGRVLSAKIFVDKVTGVSK 382
>gi|72390724|ref|XP_845656.1| hypothetical protein [Trypanosoma brucei brucei strain 927/4
GUTat10.1]
gi|62176798|gb|AAX70896.1| hypothetical protein, conserved [Trypanosoma brucei]
gi|70802192|gb|AAZ12097.1| hypothetical protein, conserved [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
Length = 180
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Query: 21 EQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
Q P K+FVGQ+P DE L +FS YG V +I++LRD +SKG F
Sbjct: 57 HQASPTAAKLFVGQLPFETDEKRLYDLFSAYGTVEHIHILRDS-QNRSKGAAF 108
>gi|440792905|gb|ELR14112.1| RNA recognition motif domain containing protein [Acanthamoeba
castellanii str. Neff]
Length = 458
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 33/46 (71%)
Query: 28 IKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
+K+F+GQ+P+SM E + +F+ +G + + ++R++ TG+S+G F
Sbjct: 104 VKLFIGQLPKSMTEPYIGPLFAPFGNLVEVAIIRNRATGESRGCAF 149
Score = 39.3 bits (90), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Query: 25 PDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEA-AFLKIARA 83
P +F+ +P + DL +FS +G++ ++ V DK+T SKG F + A AR
Sbjct: 372 PPGANLFIYHLPTHYGDGDLLTLFSPFGQILSVKVFLDKMTMVSKGFGFVSYASADSARL 431
Query: 84 AIE 86
AIE
Sbjct: 432 AIE 434
Score = 37.4 bits (85), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 5/55 (9%)
Query: 28 IKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAAFLKIAR 82
K+F+G +PR++ E L +F YG + + VLR+ G S+G AF+K R
Sbjct: 212 FKLFIGMLPRTVGEDGLRAIFQPYGSIIEVVVLREP-DGSSRG----CAFVKYHR 261
>gi|261329063|emb|CBH12042.1| hypothetical protein, conserved [Trypanosoma brucei gambiense
DAL972]
Length = 180
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Query: 21 EQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
Q P K+FVGQ+P DE L +FS YG V +I++LRD +SKG F
Sbjct: 57 HQASPTAAKLFVGQLPFETDEKRLYDLFSAYGTVEHIHILRDS-QNRSKGAAF 108
>gi|302818861|ref|XP_002991103.1| hypothetical protein SELMODRAFT_450105 [Selaginella
moellendorffii]
gi|300141197|gb|EFJ07911.1| hypothetical protein SELMODRAFT_450105 [Selaginella
moellendorffii]
Length = 509
Score = 47.8 bits (112), Expect = 8e-04, Method: Composition-based stats.
Identities = 20/53 (37%), Positives = 35/53 (66%), Gaps = 1/53 (1%)
Query: 27 FIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAAFLK 79
++K+FVG +PR++ E + MF EYG V + +++D+ TG +G +F F+K
Sbjct: 41 YVKLFVGSVPRTITEQQVRSMFEEYGEVLEVAIIKDRRTGHQQG-MFCCCFVK 92
Score = 35.4 bits (80), Expect = 4.2, Method: Composition-based stats.
Identities = 25/62 (40%), Positives = 39/62 (62%), Gaps = 10/62 (16%)
Query: 29 KMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAAFLK-----IARA 83
K+FVG + + E ++ ++FS YGRV +I V+RD+ QS+G AF+K +A+A
Sbjct: 137 KLFVGCLNKHASEREIEEVFSPYGRVDDIYVMRDE-HKQSRG----CAFIKYPSRDMAQA 191
Query: 84 AI 85
AI
Sbjct: 192 AI 193
>gi|449460375|ref|XP_004147921.1| PREDICTED: zinc finger CCCH domain-containing protein 25-like
[Cucumis sativus]
Length = 395
Score = 47.8 bits (112), Expect = 8e-04, Method: Composition-based stats.
Identities = 23/50 (46%), Positives = 34/50 (68%)
Query: 26 DFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEA 75
D +FVG IP + E DL +F++YG + ++N++RDK TG+SKG F A
Sbjct: 34 DSAYVFVGGIPYDLTEGDLLAVFAQYGEIVDVNLIRDKGTGKSKGYAFVA 83
>gi|224087249|ref|XP_002190976.1| PREDICTED: ELAV-like protein 1-like [Taeniopygia guttata]
gi|449266784|gb|EMC77794.1| ELAV-like protein 1 [Columba livia]
Length = 326
Score = 47.8 bits (112), Expect = 8e-04, Method: Composition-based stats.
Identities = 22/55 (40%), Positives = 34/55 (61%), Gaps = 3/55 (5%)
Query: 22 QPDPDFIK---MFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
+P + IK +++ +PRSM + D+ MFS +GR+ N VL D+ TG S+G F
Sbjct: 97 RPSSEVIKDANLYISGLPRSMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAF 151
Score = 35.4 bits (80), Expect = 4.4, Method: Composition-based stats.
Identities = 16/44 (36%), Positives = 26/44 (59%)
Query: 30 MFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
+ V +P++M + +L +FS G V + ++RDKV G S G F
Sbjct: 22 LIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGF 65
>gi|115456325|ref|NP_001051763.1| Os03g0826400 [Oryza sativa Japonica Group]
gi|122246709|sp|Q10B98.1|C3H25_ORYSJ RecName: Full=Zinc finger CCCH domain-containing protein 25;
Short=OsC3H25
gi|15042832|gb|AAK82455.1|AC091247_22 putative RNA binding protein [Oryza sativa Japonica Group]
gi|18855068|gb|AAL79760.1|AC096687_24 putative small nuclear ribonucleoprotein [Oryza sativa Japonica
Group]
gi|108711850|gb|ABF99645.1| RNA recognition motif family protein, expressed [Oryza sativa
Japonica Group]
gi|113550234|dbj|BAF13677.1| Os03g0826400 [Oryza sativa Japonica Group]
gi|125588469|gb|EAZ29133.1| hypothetical protein OsJ_13196 [Oryza sativa Japonica Group]
Length = 312
Score = 47.8 bits (112), Expect = 8e-04, Method: Composition-based stats.
Identities = 24/50 (48%), Positives = 34/50 (68%)
Query: 26 DFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEA 75
D +FVG IP + E DL +F++YG V ++N++RDK TG+SKG F A
Sbjct: 34 DSAYVFVGGIPYDLTEGDLLAVFAQYGEVVDVNLVRDKGTGKSKGFAFLA 83
>gi|356521753|ref|XP_003529516.1| PREDICTED: flowering time control protein FCA-like [Glycine max]
Length = 737
Score = 47.8 bits (112), Expect = 8e-04, Method: Composition-based stats.
Identities = 20/48 (41%), Positives = 32/48 (66%)
Query: 26 DFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
+F K+FVG +PR+ E D+ +F E+G V + +++DK TGQ +G F
Sbjct: 84 NFAKLFVGSVPRTATEEDIRPLFEEHGNVIEVALIKDKKTGQHQGCCF 131
>gi|326510015|dbj|BAJ87224.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 203
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 33/45 (73%)
Query: 27 FIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGK 71
++K+FVG +PR+ +E D+ +F ++G V + ++RD+ TG+ +G+
Sbjct: 158 YVKLFVGSVPRTANEDDVRPLFEDHGDVLEVALIRDRKTGEQQGE 202
>gi|356526389|ref|XP_003531800.1| PREDICTED: LOW QUALITY PROTEIN: DEAD-box ATP-dependent RNA
helicase 1-like [Glycine max]
Length = 617
Score = 47.8 bits (112), Expect = 8e-04, Method: Composition-based stats.
Identities = 23/50 (46%), Positives = 33/50 (66%)
Query: 26 DFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEA 75
D +FVG IP + E DL +F++YG V ++N++RDK TG+SK F A
Sbjct: 34 DSAYIFVGGIPFDLTEGDLLPVFAQYGEVVDVNLVRDKGTGKSKDFAFLA 83
>gi|312072049|ref|XP_003138888.1| hypothetical protein LOAG_03303 [Loa loa]
gi|307765946|gb|EFO25180.1| hypothetical protein LOAG_03303 [Loa loa]
Length = 312
Score = 47.8 bits (112), Expect = 8e-04, Method: Composition-based stats.
Identities = 19/44 (43%), Positives = 33/44 (75%)
Query: 30 MFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
++VG +P ++E D+ +FS+YG + NIN++RD+ TG+S+G F
Sbjct: 40 IYVGGLPFDLNEGDVIAVFSQYGEIVNINLIRDRKTGKSRGFAF 83
>gi|109077776|ref|XP_001110036.1| PREDICTED: RNA-binding motif protein, X-linked 2 [Macaca mulatta]
Length = 322
Score = 47.8 bits (112), Expect = 8e-04, Method: Composition-based stats.
Identities = 21/44 (47%), Positives = 32/44 (72%)
Query: 30 MFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
+F+G +P + E D+ +FS+YG + NIN++RDK TG+SKG F
Sbjct: 38 IFLGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCF 81
>gi|242048440|ref|XP_002461966.1| hypothetical protein SORBIDRAFT_02g011330 [Sorghum bicolor]
gi|241925343|gb|EER98487.1| hypothetical protein SORBIDRAFT_02g011330 [Sorghum bicolor]
Length = 294
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 37/54 (68%), Gaps = 1/54 (1%)
Query: 20 PEQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
P Q P ++++VG +P +D++ L +MFSE+G+V + V+ D+ TG+S+G F
Sbjct: 203 PRQSGPS-LRIYVGNLPWQVDDSKLVQMFSEHGKVVDARVVYDRETGRSRGFGF 255
>gi|134076074|emb|CAK39433.1| unnamed protein product [Aspergillus niger]
Length = 289
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 35/54 (64%), Gaps = 4/54 (7%)
Query: 26 DFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAAFLK 79
D +++G +P + E D+ +FS+YG +IN++RDK TG+S+G AFLK
Sbjct: 31 DTAYIYIGGLPYDLSEGDIVTIFSQYGEPVHINLVRDKETGKSRG----FAFLK 80
>gi|71407975|ref|XP_806419.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
gi|70870163|gb|EAN84568.1| hypothetical protein, conserved [Trypanosoma cruzi]
Length = 171
Score = 47.8 bits (112), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Query: 22 QPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
Q P K+FVGQ+P DE L +FS YG V +I++LRD + +SKG F
Sbjct: 47 QLSPTAAKLFVGQLPFETDELRLYNLFSAYGNVEHIHILRD-LKNRSKGAAF 97
>gi|406886422|gb|EKD33455.1| hypothetical protein ACD_76C00026G0004 [uncultured bacterium]
Length = 83
Score = 47.8 bits (112), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 40/60 (66%), Gaps = 1/60 (1%)
Query: 29 KMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF-EAAFLKIARAAIEP 87
K+FVG I ++DL+K+F+E G V + ++ DK+TG+S+G F E A ++A AAI+
Sbjct: 4 KLFVGNISWDATDSDLSKLFAEVGEVVSAQIVMDKLTGRSRGFGFVEMATDELAEAAIKA 63
>gi|294929983|ref|XP_002779452.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
gi|239888560|gb|EER11247.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
Length = 414
Score = 47.8 bits (112), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 36/55 (65%)
Query: 16 SMSLPEQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKG 70
S SLP + D K+F+G +P S D+ LT M ++YG + + NV+ D+ TG+++G
Sbjct: 177 SSSLPYRVPDDPCKVFIGGLPPSADDDSLTDMLAQYGTLVDCNVMIDRGTGRNRG 231
Score = 41.2 bits (95), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 31/45 (68%)
Query: 26 DFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKG 70
D K+F+G +P+S D+ +T+ S+YG V ++ V+ D+ TG+ +G
Sbjct: 321 DPCKVFLGGLPQSADQNRVTEYLSQYGDVQDVTVMYDRNTGRHRG 365
Score = 36.2 bits (82), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 30/45 (66%)
Query: 29 KMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
K+F+G +P + + +L + FS++G + + V+ D +TG+S+G F
Sbjct: 29 KLFLGGLPYNCGQRELREYFSQFGDIDDATVMIDHLTGRSRGFGF 73
>gi|357490653|ref|XP_003615614.1| RNA binding domain protein [Medicago truncatula]
gi|355516949|gb|AES98572.1| RNA binding domain protein [Medicago truncatula]
Length = 393
Score = 47.8 bits (112), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 31/44 (70%)
Query: 30 MFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
+FVG IP E D+ +F++YG V +IN++RDK TG+SKG F
Sbjct: 38 VFVGGIPFDFTEGDVIAVFAQYGEVVDINLVRDKGTGKSKGFAF 81
>gi|296083224|emb|CBI22860.3| unnamed protein product [Vitis vinifera]
Length = 708
Score = 47.8 bits (112), Expect = 9e-04, Method: Composition-based stats.
Identities = 20/47 (42%), Positives = 31/47 (65%)
Query: 27 FIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
F K+FVG +PR+ E D+ +F E+G V + +++DK TGQ +G F
Sbjct: 40 FAKLFVGSVPRTATEEDIRPLFEEHGNVLEVALIKDKRTGQQQGCCF 86
>gi|355757697|gb|EHH61222.1| RNA-binding motif protein, X-linked 2 [Macaca fascicularis]
Length = 334
Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats.
Identities = 21/44 (47%), Positives = 32/44 (72%)
Query: 30 MFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
+F+G +P + E D+ +FS+YG + NIN++RDK TG+SKG F
Sbjct: 50 IFLGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCF 93
>gi|355750033|gb|EHH54371.1| hypothetical protein EGM_15194 [Macaca fascicularis]
Length = 310
Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats.
Identities = 21/44 (47%), Positives = 32/44 (72%)
Query: 30 MFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
+F+G +P + E D+ +FS+YG + NIN++RDK TG+SKG F
Sbjct: 38 IFLGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCF 81
>gi|355705153|gb|EHH31078.1| RNA-binding motif protein, X-linked 2, partial [Macaca mulatta]
Length = 321
Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats.
Identities = 21/44 (47%), Positives = 32/44 (72%)
Query: 30 MFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
+F+G +P + E D+ +FS+YG + NIN++RDK TG+SKG F
Sbjct: 37 IFLGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCF 80
>gi|326934269|ref|XP_003213214.1| PREDICTED: ELAV-like protein 1-like [Meleagris gallopavo]
Length = 298
Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats.
Identities = 22/55 (40%), Positives = 34/55 (61%), Gaps = 3/55 (5%)
Query: 22 QPDPDFIK---MFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
+P + IK +++ +PRSM + D+ MFS +GR+ N VL D+ TG S+G F
Sbjct: 69 RPSSEVIKDANLYISGLPRSMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAF 123
>gi|342181735|emb|CCC91214.1| conserved hypothetical protein [Trypanosoma congolense IL3000]
Length = 177
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 34/56 (60%), Gaps = 2/56 (3%)
Query: 18 SLPEQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
S+P Q P K+FVGQ+P DE L +FS YG V +I++LRD +SKG F
Sbjct: 52 SIP-QASPTAAKLFVGQLPFETDEKRLYDLFSAYGTVEHIHILRDS-QNRSKGAAF 105
>gi|225683370|gb|EEH21654.1| U2 snRNP component IST3 [Paracoccidioides brasiliensis Pb03]
Length = 280
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 35/54 (64%), Gaps = 4/54 (7%)
Query: 26 DFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAAFLK 79
D +++G +P + E D+ +FS+YG ++N++RDK TG+SKG AFLK
Sbjct: 31 DTAYIYIGSLPYDLSEGDILTIFSQYGEPVHLNLVRDKETGKSKG----FAFLK 80
>gi|344286268|ref|XP_003414881.1| PREDICTED: RNA-binding motif protein, X-linked 2-like [Loxodonta
africana]
Length = 401
Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats.
Identities = 22/44 (50%), Positives = 32/44 (72%)
Query: 30 MFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
+F+G +P + E D+ +FS+YG V NIN++RDK TG+SKG F
Sbjct: 112 VFLGGLPYELTEGDIICVFSQYGEVVNINLVRDKKTGKSKGFCF 155
>gi|431908562|gb|ELK12156.1| RNA-binding motif protein, X-linked 2 [Pteropus alecto]
Length = 346
Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats.
Identities = 21/44 (47%), Positives = 32/44 (72%)
Query: 30 MFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
+F+G +P + E D+ +FS+YG + NIN++RDK TG+SKG F
Sbjct: 58 IFLGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCF 101
>gi|219109993|ref|XP_002176749.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217411284|gb|EEC51212.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 499
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 32/48 (66%)
Query: 26 DFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
D +K+FVGQ+P++M E D+ F +G + ++ ++RDK TG +G F
Sbjct: 121 DPMKLFVGQVPKAMSEEDVFPTFDSFGPLKDVAIIRDKHTGLHRGCAF 168
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Query: 25 PDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAAFLKI-ARA 83
P +FV +P + +ADL F+ +G V + V DK +G+SKG F + I A A
Sbjct: 397 PAGANLFVYHLPHDLTDADLATAFNPFGNVISAKVYVDKYSGESKGFGFVSYDSVIAAEA 456
Query: 84 AIE 86
AIE
Sbjct: 457 AIE 459
>gi|426402318|ref|YP_007021289.1| RNA-binding protein [Bdellovibrio bacteriovorus str. Tiberius]
gi|425858986|gb|AFY00022.1| RNA-binding protein [Bdellovibrio bacteriovorus str. Tiberius]
Length = 104
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 40/59 (67%), Gaps = 1/59 (1%)
Query: 29 KMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF-EAAFLKIARAAIE 86
K++VG + ++D+ L ++F+E+G V +NV+ D+ TG+SKG F E + ARAAIE
Sbjct: 4 KIYVGNLSFNVDQDQLNQVFAEFGTVDTVNVITDRETGRSKGFAFVEMSTETEARAAIE 62
>gi|295666436|ref|XP_002793768.1| RNA binding domain-containing protein [Paracoccidioides sp.
'lutzii' Pb01]
gi|226277421|gb|EEH32987.1| RNA binding domain-containing protein [Paracoccidioides sp.
'lutzii' Pb01]
Length = 280
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 35/54 (64%), Gaps = 4/54 (7%)
Query: 26 DFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAAFLK 79
D +++G +P + E D+ +FS+YG ++N++RDK TG+SKG AFLK
Sbjct: 31 DTAYIYIGSLPYDLSEGDILTIFSQYGEPVHLNLVRDKETGKSKG----FAFLK 80
>gi|317029441|ref|XP_001391597.2| U2 snRNP component ist3 [Aspergillus niger CBS 513.88]
Length = 280
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 35/54 (64%), Gaps = 4/54 (7%)
Query: 26 DFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAAFLK 79
D +++G +P + E D+ +FS+YG +IN++RDK TG+S+G AFLK
Sbjct: 31 DTAYIYIGGLPYDLSEGDIVTIFSQYGEPVHINLVRDKETGKSRG----FAFLK 80
>gi|260834392|ref|XP_002612195.1| hypothetical protein BRAFLDRAFT_125379 [Branchiostoma floridae]
gi|229297569|gb|EEN68204.1| hypothetical protein BRAFLDRAFT_125379 [Branchiostoma floridae]
Length = 418
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 32/48 (66%)
Query: 26 DFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
D +FVG +P + E D+ +FS+YG + NIN++RDK TG+ KG F
Sbjct: 33 DSAWVFVGGLPYELTEGDVLCVFSQYGEIVNINMVRDKKTGKPKGFAF 80
>gi|159490854|ref|XP_001703388.1| predicted protein [Chlamydomonas reinhardtii]
gi|158280312|gb|EDP06070.1| predicted protein [Chlamydomonas reinhardtii]
Length = 451
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 20/49 (40%), Positives = 30/49 (61%)
Query: 25 PDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
PD IK+FVG +P+S + L +F G+V + ++ DK T +SKG F
Sbjct: 193 PDAIKLFVGNVPKSCTDEQLLPLFQSIGKVVELVIVHDKATHESKGSAF 241
>gi|182888560|ref|NP_001107258.2| RNA-binding motif protein, X-linked 2 [Rattus norvegicus]
gi|374253659|sp|B0BN49.1|RBMX2_RAT RecName: Full=RNA-binding motif protein, X-linked 2
gi|165970686|gb|AAI58685.1| Rbmx2 protein [Rattus norvegicus]
Length = 328
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 21/44 (47%), Positives = 32/44 (72%)
Query: 30 MFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
+F+G +P + E D+ +FS+YG + NIN++RDK TG+SKG F
Sbjct: 38 IFLGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCF 81
>gi|359477208|ref|XP_002279515.2| PREDICTED: flowering time control protein FCA [Vitis vinifera]
Length = 785
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 20/47 (42%), Positives = 31/47 (65%)
Query: 27 FIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
F K+FVG +PR+ E D+ +F E+G V + +++DK TGQ +G F
Sbjct: 117 FAKLFVGSVPRTATEEDIRPLFEEHGNVLEVALIKDKRTGQQQGCCF 163
>gi|356535559|ref|XP_003536312.1| PREDICTED: CUGBP Elav-like family member 1-B-like [Glycine max]
Length = 429
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 31/46 (67%)
Query: 28 IKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
+K+FVGQ+P+ M E ++ MF E+ V +N++RDK + S+G F
Sbjct: 16 VKLFVGQVPKRMAEDEVLAMFKEFALVDEVNIIRDKASRASRGCCF 61
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 37/63 (58%), Gaps = 10/63 (15%)
Query: 29 KMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAAFLKI-----ARA 83
K+F+G +P+++ E +++ +FS YG + ++ +LR SKG AFLK A A
Sbjct: 105 KLFIGMLPKNISEDEVSDLFSMYGTIKDLQILRGSQQ-TSKG----CAFLKYETKEQALA 159
Query: 84 AIE 86
A+E
Sbjct: 160 ALE 162
Score = 36.2 bits (82), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 24/45 (53%)
Query: 25 PDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSK 69
P +F+ IP+ + +L F +GRV + + DKVTG SK
Sbjct: 341 PPGANLFIYHIPQEYGDEELATTFQPFGRVLSAKIFVDKVTGVSK 385
>gi|410212532|gb|JAA03485.1| RNA binding motif protein, X-linked 2 [Pan troglodytes]
gi|410251714|gb|JAA13824.1| RNA binding motif protein, X-linked 2 [Pan troglodytes]
gi|410308778|gb|JAA32989.1| RNA binding motif protein, X-linked 2 [Pan troglodytes]
gi|410333627|gb|JAA35760.1| RNA binding motif protein, X-linked 2 [Pan troglodytes]
Length = 322
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 21/44 (47%), Positives = 32/44 (72%)
Query: 30 MFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
+F+G +P + E D+ +FS+YG + NIN++RDK TG+SKG F
Sbjct: 38 IFLGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCF 81
>gi|226286984|gb|EEH42497.1| RNA binding domain-containing protein [Paracoccidioides
brasiliensis Pb18]
Length = 280
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 35/54 (64%), Gaps = 4/54 (7%)
Query: 26 DFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAAFLK 79
D +++G +P + E D+ +FS+YG ++N++RDK TG+SKG AFLK
Sbjct: 31 DTAYIYIGSLPYDLSEGDILTIFSQYGEPVHLNLVRDKETGKSKG----FAFLK 80
>gi|357129324|ref|XP_003566314.1| PREDICTED: CUGBP Elav-like family member 2-like [Brachypodium
distachyon]
Length = 459
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 30/46 (65%)
Query: 28 IKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
+K+FVGQ+P+ M EA+L MF + V + V+RDK T S+G F
Sbjct: 39 VKLFVGQVPKQMTEAELAAMFRDVAIVDEVTVIRDKATKVSRGCCF 84
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 48/101 (47%), Gaps = 21/101 (20%)
Query: 3 REKRRECTYEYVRSMSLPEQPDPDFIK------------MFVGQIPRSMDEADLTKMFSE 50
RE+ + Y +LP P P +K +F+G +P+++ +A++T +FS+
Sbjct: 90 REEADKAVNAYHNKRTLPGAPSPLQVKYADGELERLEHKLFIGMLPKNVTDAEMTDLFSQ 149
Query: 51 YGRVYNINVLRDKVTGQSKGKIFEAAFLKI-----ARAAIE 86
YG + ++ +LR G AFLK A AAIE
Sbjct: 150 YGNIKDLQILRGSQQTSKAG----CAFLKYETKEQAMAAIE 186
Score = 38.9 bits (89), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 25/50 (50%)
Query: 20 PEQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSK 69
P+ P +F+ IP+ + DL F +GRV + V DK TG SK
Sbjct: 365 PQIEGPPGANLFIYHIPQEFGDQDLANAFQNFGRVLSAKVFVDKATGASK 414
>gi|124513886|ref|XP_001350299.1| RNA binding protein, putative [Plasmodium falciparum 3D7]
gi|23615716|emb|CAD52708.1| RNA binding protein, putative [Plasmodium falciparum 3D7]
Length = 509
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 46/77 (59%), Gaps = 6/77 (7%)
Query: 6 RRECTYEYVRSMSLPEQPDPDF-IKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKV 64
+ E T +Y + P P P IK+F+G++P++++E L +F EYG V + ++RDK+
Sbjct: 63 KDENTIDY-GNHDFPCNPAPPVPIKLFIGRVPKNIEEDQLRPIFEEYGIVNEVVIIRDKI 121
Query: 65 TGQSKGKIFEAAFLKIA 81
T K +AF+K+A
Sbjct: 122 TNVHKS----SAFVKMA 134
Score = 43.9 bits (102), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 31/48 (64%)
Query: 26 DFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
D K+F+G +P+++ E ++ +MFS YG V + +++D TG KG F
Sbjct: 182 DQAKLFIGSLPKNITEDNIKEMFSPYGTVEEVFIMKDNSTGLGKGCSF 229
Score = 35.8 bits (81), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 18 SLPEQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEA-A 76
+L E P +F+ +P + DL + FS +G + + + +K TG+++G F +
Sbjct: 359 NLSESSGPPGANLFIFHVPNEWQQTDLIQAFSPFGELLSARIATEKNTGRNRGFAFVSYD 418
Query: 77 FLKIARAAI 85
L+ A AAI
Sbjct: 419 SLESAAAAI 427
>gi|430812740|emb|CCJ29861.1| unnamed protein product, partial [Pneumocystis jirovecii]
Length = 185
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 32/48 (66%)
Query: 26 DFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
D +++G +P + E D+ +FS+YG +IN++RDK TG+SKG F
Sbjct: 27 DSAYIYIGGLPYDLTEGDIICIFSQYGEPLDINLIRDKKTGKSKGFCF 74
>gi|15232729|ref|NP_190296.1| RNA-binding motif protein, X-linked 2 [Arabidopsis thaliana]
gi|75337070|sp|Q9SD61.1|C3H42_ARATH RecName: Full=Zinc finger CCCH domain-containing protein 42;
Short=AtC3H42
gi|6522593|emb|CAB61958.1| putative RNA binding protein [Arabidopsis thaliana]
gi|27311733|gb|AAO00832.1| putative RNA-binding protein [Arabidopsis thaliana]
gi|34098859|gb|AAQ56812.1| At3g47120 [Arabidopsis thaliana]
gi|332644724|gb|AEE78245.1| RNA-binding motif protein, X-linked 2 [Arabidopsis thaliana]
Length = 352
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 22/46 (47%), Positives = 33/46 (71%)
Query: 30 MFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEA 75
++VG IP + E DL +FS+YG + ++N++RDK TG+SKG F A
Sbjct: 38 VYVGGIPFDLTEGDLLAVFSQYGEIVDVNLIRDKGTGKSKGFAFLA 83
>gi|341865543|tpg|DAA34911.1| TPA_exp: RRM domain-containing RNA-binding protein Bruno
[Pleurobrachia pileus]
Length = 384
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 20/46 (43%), Positives = 31/46 (67%)
Query: 28 IKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
+K+FVGQ+P++ +E+DL F +YG + NI V RD+ + KG F
Sbjct: 18 LKLFVGQVPKNFEESDLKPYFEKYGPLVNIKVCRDRDSKAHKGCAF 63
Score = 38.5 bits (88), Expect = 0.45, Method: Composition-based stats.
Identities = 17/56 (30%), Positives = 33/56 (58%), Gaps = 2/56 (3%)
Query: 29 KMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAAFLKIARAA 84
++FVG I +S++ +L MF ++G V + N+L + G+ + F+K A+A+
Sbjct: 108 RLFVGMISKSLNGDELKAMFEQFGEVVDCNILTSMINGEKMSR--GCGFVKFAKAS 161
>gi|440684571|ref|YP_007159366.1| putative transcriptional regulator [Anabaena cylindrica PCC 7122]
gi|428681690|gb|AFZ60456.1| putative transcriptional regulator [Anabaena cylindrica PCC 7122]
Length = 604
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 42/62 (67%), Gaps = 1/62 (1%)
Query: 26 DFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKG-KIFEAAFLKIARAA 84
D+ K+F+G + + DE DL +FS++G + ++ + +D++TG+S+G I E L+ A+ A
Sbjct: 523 DYAKIFIGNVDFNADEQDLETLFSQFGEISDVYLPKDRMTGKSRGFAIVEFEQLESAKKA 582
Query: 85 IE 86
+E
Sbjct: 583 LE 584
>gi|118600973|ref|NP_057108.2| RNA-binding motif protein, X-linked 2 [Homo sapiens]
gi|62512110|sp|Q9Y388.2|RBMX2_HUMAN RecName: Full=RNA-binding motif protein, X-linked 2
gi|4938275|emb|CAB43745.1| hypothetical protein [Homo sapiens]
gi|62020769|gb|AAH33750.1| RNA binding motif protein, X-linked 2 [Homo sapiens]
gi|119632205|gb|EAX11800.1| RNA binding motif protein, X-linked 2, isoform CRA_b [Homo
sapiens]
gi|158259171|dbj|BAF85544.1| unnamed protein product [Homo sapiens]
Length = 322
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 21/44 (47%), Positives = 32/44 (72%)
Query: 30 MFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
+F+G +P + E D+ +FS+YG + NIN++RDK TG+SKG F
Sbjct: 38 IFLGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCF 81
>gi|255577755|ref|XP_002529752.1| U1 small nuclear ribonucleoprotein 70 kD, putative [Ricinus
communis]
gi|223530750|gb|EEF32618.1| U1 small nuclear ribonucleoprotein 70 kD, putative [Ricinus
communis]
Length = 389
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 32/50 (64%), Gaps = 1/50 (2%)
Query: 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
DP F +FVG++ S E L K S+YG+V N+ ++RD VTG S+G F
Sbjct: 58 DP-FCTLFVGRLSHSTTENTLLKAMSKYGKVRNLRLVRDIVTGASRGYAF 106
>gi|297819328|ref|XP_002877547.1| hypothetical protein ARALYDRAFT_905943 [Arabidopsis lyrata subsp.
lyrata]
gi|297323385|gb|EFH53806.1| hypothetical protein ARALYDRAFT_905943 [Arabidopsis lyrata subsp.
lyrata]
Length = 316
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 22/46 (47%), Positives = 33/46 (71%)
Query: 30 MFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEA 75
++VG IP + E DL +FS+YG + ++N++RDK TG+SKG F A
Sbjct: 38 VYVGCIPFDLTEGDLLAVFSQYGEIVDVNLIRDKGTGKSKGFAFLA 83
>gi|223946841|gb|ACN27504.1| unknown [Zea mays]
gi|407232618|gb|AFT82651.1| C3H30 C3H type transcription factor, partial [Zea mays subsp.
mays]
gi|414873727|tpg|DAA52284.1| TPA: RNA-binding motif protein, X-linked 2 [Zea mays]
Length = 298
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 22/50 (44%), Positives = 34/50 (68%)
Query: 26 DFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEA 75
D ++VG +P + E DL +F++YG V ++N++RDK TG+SKG F A
Sbjct: 34 DSAYVYVGGVPFDLTEGDLLAIFAQYGEVVDVNLVRDKGTGKSKGFAFLA 83
>gi|261202032|ref|XP_002628230.1| RNA binding domain-containing protein [Ajellomyces dermatitidis
SLH14081]
gi|239590327|gb|EEQ72908.1| RNA binding domain-containing protein [Ajellomyces dermatitidis
SLH14081]
Length = 258
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 35/54 (64%), Gaps = 4/54 (7%)
Query: 26 DFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAAFLK 79
D +++G +P + E D+ +FS+YG ++N++RDK TG+SKG AFLK
Sbjct: 31 DTAYIYIGSLPYDLSEGDILTIFSQYGEPVHLNLVRDKETGKSKG----FAFLK 80
>gi|119632204|gb|EAX11799.1| RNA binding motif protein, X-linked 2, isoform CRA_a [Homo
sapiens]
Length = 321
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 21/44 (47%), Positives = 32/44 (72%)
Query: 30 MFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
+F+G +P + E D+ +FS+YG + NIN++RDK TG+SKG F
Sbjct: 37 IFLGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCF 80
>gi|226496357|ref|NP_001149007.1| RNA-binding motif protein, X-linked 2 [Zea mays]
gi|195623912|gb|ACG33786.1| RNA-binding motif protein, X-linked 2 [Zea mays]
Length = 298
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 22/50 (44%), Positives = 34/50 (68%)
Query: 26 DFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEA 75
D ++VG +P + E DL +F++YG V ++N++RDK TG+SKG F A
Sbjct: 34 DSAYVYVGGVPFDLTEGDLLAIFAQYGEVVDVNLVRDKGTGKSKGFAFLA 83
>gi|356567272|ref|XP_003551845.1| PREDICTED: uncharacterized protein LOC100814109 [Glycine max]
Length = 347
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 33/50 (66%), Gaps = 1/50 (2%)
Query: 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
DP + +FV ++ R E DL K+ S+YGRV N+ ++RD VTG S+G F
Sbjct: 60 DP-YCTLFVARLSRLTTEDDLRKVMSKYGRVKNLRLVRDIVTGASRGYAF 108
>gi|302806382|ref|XP_002984941.1| hypothetical protein SELMODRAFT_7006 [Selaginella moellendorffii]
gi|300147527|gb|EFJ14191.1| hypothetical protein SELMODRAFT_7006 [Selaginella moellendorffii]
Length = 130
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 35/56 (62%), Gaps = 2/56 (3%)
Query: 20 PEQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEA 75
E D +I F G + ++E D+ +F++YG V ++N++RDK TG+SKG F A
Sbjct: 30 AEYKDSAYI--FFGGLAYELNEGDILAVFAQYGEVVDVNLIRDKGTGKSKGYGFLA 83
>gi|302794524|ref|XP_002979026.1| hypothetical protein SELMODRAFT_6997 [Selaginella moellendorffii]
gi|300153344|gb|EFJ19983.1| hypothetical protein SELMODRAFT_6997 [Selaginella moellendorffii]
Length = 130
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 35/56 (62%), Gaps = 2/56 (3%)
Query: 20 PEQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEA 75
E D +I F G + ++E D+ +F++YG V ++N++RDK TG+SKG F A
Sbjct: 30 AEYKDSAYI--FFGGLAYELNEGDILAVFAQYGEVVDVNLIRDKGTGKSKGYGFLA 83
>gi|193211762|ref|YP_001997715.1| RNP-1 like RNA-binding protein [Chlorobaculum parvum NCIB 8327]
gi|193085239|gb|ACF10515.1| RNP-1 like RNA-binding protein [Chlorobaculum parvum NCIB 8327]
Length = 90
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 32/43 (74%)
Query: 28 IKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKG 70
+ +++G +P S+ E DL FSE+G+V++ N++ DK +G+SKG
Sbjct: 1 MNIYIGNLPYSVSEDDLRDAFSEFGQVHSANIITDKFSGRSKG 43
>gi|426397384|ref|XP_004064898.1| PREDICTED: RNA-binding motif protein, X-linked 2 [Gorilla gorilla
gorilla]
Length = 322
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 21/44 (47%), Positives = 32/44 (72%)
Query: 30 MFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
+F+G +P + E D+ +FS+YG + NIN++RDK TG+SKG F
Sbjct: 38 IFLGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCF 81
>gi|358368597|dbj|GAA85213.1| RNA binding domain protein [Aspergillus kawachii IFO 4308]
Length = 289
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 32/48 (66%)
Query: 26 DFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
D +++G +P + E D+ +FS+YG +IN++RDK TG+S+G F
Sbjct: 31 DTAYIYIGGLPYDLSEGDIITIFSQYGEPVHINLVRDKETGKSRGFCF 78
>gi|297814257|ref|XP_002875012.1| RNA recognition motif-containing protein [Arabidopsis lyrata subsp.
lyrata]
gi|297320849|gb|EFH51271.1| RNA recognition motif-containing protein [Arabidopsis lyrata subsp.
lyrata]
Length = 494
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 48/84 (57%), Gaps = 8/84 (9%)
Query: 4 EKRRECTYEYVRSMSLPEQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDK 63
E+ RE +Y +SLP P ++F+G +PR + E DL + E G ++ + +++D+
Sbjct: 98 EEERE---KYSHLLSLP----PHGSEVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDR 150
Query: 64 VTGQSKGKIFEAAFLK-IARAAIE 86
+G SKG F A K +A+ AIE
Sbjct: 151 DSGDSKGYAFVAFKTKDVAQKAIE 174
>gi|239612039|gb|EEQ89026.1| U2 snRNP component IST3 [Ajellomyces dermatitidis ER-3]
Length = 258
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 35/54 (64%), Gaps = 4/54 (7%)
Query: 26 DFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAAFLK 79
D +++G +P + E D+ +FS+YG ++N++RDK TG+SKG AFLK
Sbjct: 11 DTAYIYIGSLPYDLSEGDILTIFSQYGEPVHLNLVRDKETGKSKG----FAFLK 60
>gi|150024447|ref|YP_001295273.1| RNA-binding protein RbpA [Flavobacterium psychrophilum JIP02/86]
gi|149770988|emb|CAL42455.1| Putative RNA-binding protein RbpA [Flavobacterium psychrophilum
JIP02/86]
Length = 133
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 31/43 (72%)
Query: 28 IKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKG 70
+ +FVG +P S++EADL + F YG V ++ ++ DK TG+SKG
Sbjct: 1 MNIFVGSLPWSIEEADLRESFEAYGAVESVKIITDKFTGRSKG 43
>gi|395329951|gb|EJF62336.1| hypothetical protein DICSQDRAFT_104771 [Dichomitus squalens
LYAD-421 SS1]
Length = 311
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 31/48 (64%)
Query: 26 DFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
D +FVG + R + E D+ +FS+YG + +IN+ RDK TG+ KG F
Sbjct: 29 DSAYIFVGGLHRDLTEGDVITIFSQYGEIMDINLPRDKETGKQKGFAF 76
>gi|334186262|ref|NP_001190647.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|332656542|gb|AEE81942.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 467
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 43/75 (57%), Gaps = 5/75 (6%)
Query: 13 YVRSMSLPEQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKI 72
Y +SLP P ++F+G +PR + E DL + E G ++ + +++D+ +G SKG
Sbjct: 85 YSHLLSLP----PHGSEVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYA 140
Query: 73 FEAAFLK-IARAAIE 86
F A K +A+ AIE
Sbjct: 141 FVAFKTKDVAQKAIE 155
>gi|334186264|ref|NP_001190648.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|332656543|gb|AEE81943.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 495
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 43/75 (57%), Gaps = 5/75 (6%)
Query: 13 YVRSMSLPEQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKI 72
Y +SLP P ++F+G +PR + E DL + E G ++ + +++D+ +G SKG
Sbjct: 105 YSHLLSLP----PHGSEVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYA 160
Query: 73 FEAAFLK-IARAAIE 86
F A K +A+ AIE
Sbjct: 161 FVAFKTKDVAQKAIE 175
>gi|156376506|ref|XP_001630401.1| predicted protein [Nematostella vectensis]
gi|156217421|gb|EDO38338.1| predicted protein [Nematostella vectensis]
Length = 215
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 31/49 (63%)
Query: 25 PDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
P ++VG +P S+ +DL K+F YG+V + +LRDK T +S+G F
Sbjct: 7 PSKSTVYVGNLPYSLTNSDLHKVFERYGKVVKVTILRDKETRESRGVAF 55
>gi|343887401|ref|NP_001230600.1| RNA binding motif protein, X-linked 2 [Sus scrofa]
Length = 329
Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 21/44 (47%), Positives = 32/44 (72%)
Query: 30 MFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
+F+G +P + E D+ +FS+YG + NIN++RDK TG+SKG F
Sbjct: 38 IFLGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCF 81
>gi|148706789|gb|EDL38736.1| trinucleotide repeat containing 4, isoform CRA_b [Mus musculus]
Length = 467
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 28/40 (70%)
Query: 34 QIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
QIPR ++E DL +F ++GR++ + V++DK TG KG F
Sbjct: 15 QIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAF 54
Score = 37.0 bits (84), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 26/45 (57%)
Query: 25 PDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSK 69
PD +F+ +P+ ++++ +MF +G V + V D+ T QSK
Sbjct: 379 PDGCNIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSK 423
>gi|388621|gb|AAA33039.1| RNA-binding protein [Mesembryanthemum crystallinum]
Length = 289
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 38/54 (70%), Gaps = 1/54 (1%)
Query: 20 PEQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
P + +P F +++VG +P +D+A L ++FSE+G+V + V+ D+ TG+S+G F
Sbjct: 198 PREYEPSF-RVYVGNLPWDVDDARLEQVFSEHGKVLSARVVSDRETGRSRGFAF 250
>gi|402226055|gb|EJU06115.1| RNA-binding domain-containing protein [Dacryopinax sp. DJM-731
SS1]
Length = 292
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 31/48 (64%)
Query: 26 DFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
D +F+G +P + E D+ +FS+YG N+N+ RDKVTG+ KG F
Sbjct: 29 DSAYIFIGGLPYELTEGDVISIFSQYGEPVNVNMPRDKVTGKPKGFAF 76
>gi|124808251|ref|XP_001348269.1| RNA binding protein, putative [Plasmodium falciparum 3D7]
gi|23497160|gb|AAN36708.1| RNA binding protein, putative [Plasmodium falciparum 3D7]
Length = 514
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 39/67 (58%), Gaps = 5/67 (7%)
Query: 8 ECTYEYVRSMSLPEQPDPDF-IKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTG 66
+C+Y+ M+ P P P IK+FV IP+++ E D+ +F EYG + ++ ++DK
Sbjct: 37 QCSYQ----MNSPYNPAPSIPIKLFVSSIPKNLTEEDIKSIFQEYGNIQDVVFIKDKKPN 92
Query: 67 QSKGKIF 73
++ +F
Sbjct: 93 VNRSNVF 99
Score = 34.7 bits (78), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 16/70 (22%), Positives = 36/70 (51%)
Query: 4 EKRRECTYEYVRSMSLPEQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDK 63
+K R+ ++ +++ E P +F+ IP + DL FS +G + + ++ ++
Sbjct: 381 QKPRKIEQSFINPINMNEITGPVGANIFIFHIPNEWIQTDLLSAFSPFGNIISAHIATER 440
Query: 64 VTGQSKGKIF 73
TG+++G F
Sbjct: 441 DTGRNRGFAF 450
>gi|365088445|ref|ZP_09327889.1| RNP-1 like RNA-binding protein [Acidovorax sp. NO-1]
gi|363417101|gb|EHL24188.1| RNP-1 like RNA-binding protein [Acidovorax sp. NO-1]
Length = 111
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 39/59 (66%), Gaps = 1/59 (1%)
Query: 29 KMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF-EAAFLKIARAAIE 86
K++VG +P S+ +A L FSE+G V + V+ D+ TG+SKG F E A ++A+AAI
Sbjct: 4 KIYVGNLPYSVTDASLQSNFSEFGGVSSAKVMMDRETGRSKGFGFVEMANAEVAQAAIS 62
>gi|145219698|ref|YP_001130407.1| RNP-1 like RNA-binding protein [Chlorobium phaeovibrioides DSM
265]
gi|145205862|gb|ABP36905.1| RNP-1 like RNA-binding protein [Chlorobium phaeovibrioides DSM
265]
Length = 90
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 39/60 (65%), Gaps = 1/60 (1%)
Query: 28 IKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF-EAAFLKIARAAIE 86
+ ++VG +P ++ E DL FSE+G+V + N++ DK +G+SKG F E + AR AIE
Sbjct: 1 MNIYVGNLPYTVSEDDLRDAFSEFGQVESANIIMDKFSGRSKGFGFVEMSDDDAAREAIE 60
>gi|18411454|ref|NP_567192.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|79324963|ref|NP_001031566.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|13605916|gb|AAK32943.1|AF367357_1 AT4g00830/A_TM018A10_14 [Arabidopsis thaliana]
gi|21360555|gb|AAM47474.1| AT4g00830/A_TM018A10_14 [Arabidopsis thaliana]
gi|110743368|dbj|BAE99571.1| hypothetical protein [Arabidopsis thaliana]
gi|332656540|gb|AEE81940.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|332656541|gb|AEE81941.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 495
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 43/75 (57%), Gaps = 5/75 (6%)
Query: 13 YVRSMSLPEQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKI 72
Y +SLP P ++F+G +PR + E DL + E G ++ + +++D+ +G SKG
Sbjct: 105 YSHLLSLP----PHGSEVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYA 160
Query: 73 FEAAFLK-IARAAIE 86
F A K +A+ AIE
Sbjct: 161 FVAFKTKDVAQKAIE 175
>gi|413944941|gb|AFW77590.1| hypothetical protein ZEAMMB73_325553 [Zea mays]
Length = 435
Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 21/46 (45%), Positives = 30/46 (65%)
Query: 28 IKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
+K+FVGQ+P+ M EA+L MF V + V+RD+VT S+G F
Sbjct: 36 VKLFVGQVPKQMSEAELAAMFRSVALVDEVTVIRDRVTRVSRGCCF 81
Score = 39.3 bits (90), Expect = 0.26, Method: Composition-based stats.
Identities = 23/63 (36%), Positives = 36/63 (57%), Gaps = 9/63 (14%)
Query: 29 KMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAAFLKI-----ARA 83
K+FVG +P+++ A++T +FS+YG + ++ +LR G AFLK A A
Sbjct: 125 KLFVGMLPKNVTHAEMTDLFSKYGNIKDLQILRGSQQTSKAG----CAFLKYETKEQAVA 180
Query: 84 AIE 86
AIE
Sbjct: 181 AIE 183
Score = 37.4 bits (85), Expect = 1.3, Method: Composition-based stats.
Identities = 18/50 (36%), Positives = 25/50 (50%)
Query: 20 PEQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSK 69
P+ P +F+ IP+ + DL F +GRV + V DK TG SK
Sbjct: 362 PQIEGPPGANLFIYHIPQEFGDHDLASAFHSFGRVLSAKVFVDKATGVSK 411
>gi|281211191|gb|EFA85357.1| RNA-binding region RNP-1 domain-containing protein
[Polysphondylium pallidum PN500]
Length = 515
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 34/47 (72%), Gaps = 1/47 (2%)
Query: 28 IKMFVGQIPRSMDEADLTKMFSEY-GRVYNINVLRDKVTGQSKGKIF 73
IK+FVGQIP+S +E +L MF++Y G + I+V+R+K T + +G F
Sbjct: 3 IKLFVGQIPKSFNEDNLKSMFADYEGSIQEISVIRNKQTNEPQGCAF 49
Score = 40.8 bits (94), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 28/50 (56%)
Query: 21 EQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKG 70
+Q P +FV IP +++D+ +FS YG V + V DK TG SKG
Sbjct: 368 QQSGPAGSNLFVYNIPNYYNDSDMFNLFSPYGHVVSSKVYTDKSTGLSKG 417
Score = 39.3 bits (90), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 29 KMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
K+FVG +PR+ E D+ +F++YG V +I +LR +SKG F
Sbjct: 93 KLFVGMLPRTYQEDDIKTLFADYGEVEDICLLRGN-NNESKGCGF 136
>gi|147838354|emb|CAN61133.1| hypothetical protein VITISV_039575 [Vitis vinifera]
Length = 1122
Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 24/57 (42%), Positives = 38/57 (66%), Gaps = 5/57 (8%)
Query: 18 SLPEQP----DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKG 70
S PE+P +P F +M+VG +P +D A L ++FSE+G+V V+ D+ TG+S+G
Sbjct: 1024 SQPERPPRVFEPAF-RMYVGNLPWDVDSARLEQVFSEHGKVVEARVVFDRETGRSRG 1079
>gi|212534622|ref|XP_002147467.1| conserved hypothetical protein [Talaromyces marneffei ATCC 18224]
gi|210069866|gb|EEA23956.1| conserved hypothetical protein [Talaromyces marneffei ATCC 18224]
Length = 267
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 35/54 (64%), Gaps = 4/54 (7%)
Query: 26 DFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAAFLK 79
D +++G +P + E D+ +FS+YG ++N++RDK TG+SKG AFLK
Sbjct: 31 DTAYIYIGGLPFDLSEGDIVTIFSQYGEPVHVNLIRDKDTGKSKG----FAFLK 80
>gi|356565014|ref|XP_003550740.1| PREDICTED: flowering time control protein FCA-like [Glycine max]
Length = 733
Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 20/47 (42%), Positives = 31/47 (65%)
Query: 27 FIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
F K+FVG +PR+ E D+ +F E+G V + +++DK TGQ +G F
Sbjct: 85 FAKLFVGSVPRTASEEDIRPLFEEHGNVIEVALIKDKKTGQHQGCCF 131
>gi|325562875|gb|ADZ31336.1| cell size RNA recognition motif 1 [synthetic construct]
Length = 79
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 33/48 (68%)
Query: 26 DFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
+++K+F+G +PR+ E D+ +F E+G V + +++D+ TG+ +G F
Sbjct: 12 NYVKLFIGSVPRTATEDDVRPLFEEHGDVVEVALIKDRKTGEQQGCCF 59
>gi|297275993|ref|XP_001092907.2| PREDICTED: ELAV-like protein 1 isoform 4 [Macaca mulatta]
Length = 387
Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 21/55 (38%), Positives = 34/55 (61%), Gaps = 3/55 (5%)
Query: 22 QPDPDFIK---MFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
+P + IK +++ +PR+M + D+ MFS +GR+ N VL D+ TG S+G F
Sbjct: 97 RPSSEVIKDANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAF 151
Score = 35.4 bits (80), Expect = 3.9, Method: Composition-based stats.
Identities = 16/44 (36%), Positives = 26/44 (59%)
Query: 30 MFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
+ V +P++M + +L +FS G V + ++RDKV G S G F
Sbjct: 22 LIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGF 65
>gi|32482369|gb|AAP84377.1| FCA protein [Triticum aestivum]
Length = 727
Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 17/47 (36%), Positives = 34/47 (72%)
Query: 27 FIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
++K+FVG +PR+ +E D+ +F ++G V + ++RD+ TG+ +G+ F
Sbjct: 113 YVKLFVGSVPRTANEDDVRPLFEDHGDVLEVALIRDRKTGEQQGRCF 159
>gi|425774283|gb|EKV12592.1| hypothetical protein PDIP_51790 [Penicillium digitatum Pd1]
gi|425776284|gb|EKV14506.1| hypothetical protein PDIG_32200 [Penicillium digitatum PHI26]
Length = 281
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 35/54 (64%), Gaps = 4/54 (7%)
Query: 26 DFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAAFLK 79
D +++G +P + E D+ +FS+YG ++N++RDK TG+SKG AFLK
Sbjct: 31 DTAYIYIGGLPFDLSEGDVIAIFSQYGEPVHVNLVRDKETGKSKG----FAFLK 80
>gi|348504906|ref|XP_003440002.1| PREDICTED: ELAV-like protein 1-like isoform 1 [Oreochromis
niloticus]
Length = 335
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 34/55 (61%), Gaps = 3/55 (5%)
Query: 22 QPDPDFIK---MFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
+P D IK +++ +PR++ + D+ MFS YGR+ N VL D+ +G S+G F
Sbjct: 108 RPSSDAIKDANLYISGLPRTLSQQDVEDMFSHYGRIINSRVLVDQASGLSRGVAF 162
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 26/45 (57%)
Query: 29 KMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
+ V +P+SM + +L +FS G V + ++RDKV G S G F
Sbjct: 32 NLIVNYLPQSMSQDELRSLFSSVGEVESAKLIRDKVAGHSLGYGF 76
Score = 35.0 bits (79), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 25/41 (60%)
Query: 30 MFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKG 70
+F+ + + DEA L +MF +G V N+ V+RD T + KG
Sbjct: 255 IFIYNLGQEADEAMLWQMFGPFGAVLNVKVIRDFNTNKCKG 295
>gi|93115150|gb|ABE98247.1| ELAV-like [Oreochromis mossambicus]
Length = 283
Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 21/55 (38%), Positives = 34/55 (61%), Gaps = 3/55 (5%)
Query: 22 QPDPDFIK---MFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
+P D IK +++ +PR++ + D+ MFS YGR+ N VL D+ +G S+G F
Sbjct: 56 RPSSDAIKDANLYISGLPRTLSQQDVEDMFSHYGRIINSRVLVDQASGLSRGVAF 110
>gi|301766430|ref|XP_002918652.1| PREDICTED: RNA-binding motif protein, X-linked 2-like [Ailuropoda
melanoleuca]
Length = 325
Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 21/44 (47%), Positives = 32/44 (72%)
Query: 30 MFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
+F+G +P + E D+ +FS+YG + NIN++RDK TG+SKG F
Sbjct: 38 IFLGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCF 81
>gi|255949586|ref|XP_002565560.1| Pc22g16450 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211592577|emb|CAP98933.1| Pc22g16450 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 279
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 35/54 (64%), Gaps = 4/54 (7%)
Query: 26 DFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAAFLK 79
D +++G +P + E D+ +FS+YG ++N++RDK TG+SKG AFLK
Sbjct: 31 DTAYIYIGGLPFDLSEGDIITIFSQYGEPVHVNLVRDKETGKSKG----FAFLK 80
>gi|381152898|ref|ZP_09864767.1| RRM domain-containing RNA-binding protein [Methylomicrobium album
BG8]
gi|380884870|gb|EIC30747.1| RRM domain-containing RNA-binding protein [Methylomicrobium album
BG8]
Length = 87
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 36/57 (63%)
Query: 29 KMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAAFLKIARAAI 85
++FVG +P EA ++ +FSE+GRV++I ++ D +G+ KG + ARAAI
Sbjct: 3 RLFVGNLPSDATEASVSALFSEFGRVHSIEIVTDLFSGKCKGFGYIGMEGHEARAAI 59
>gi|389584459|dbj|GAB67191.1| RNA-binding protein [Plasmodium cynomolgi strain B]
Length = 567
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 40/64 (62%), Gaps = 5/64 (7%)
Query: 19 LPEQPDPDF-IKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAAF 77
P P P IK+F+G++P+SM+E + +F E+G V + ++RDK+T K +AF
Sbjct: 78 FPCHPAPPVSIKLFIGRVPKSMEEEQVRPIFEEFGIVKEVVIIRDKITNIHK----SSAF 133
Query: 78 LKIA 81
+K+A
Sbjct: 134 VKMA 137
Score = 45.4 bits (106), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 34/56 (60%), Gaps = 4/56 (7%)
Query: 26 DFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAAFLKIA 81
D K+F+G +P+S+ E + +MFS YG V + +++D TG KG +F+K A
Sbjct: 185 DQAKLFIGSLPKSITEESVKEMFSPYGSVEEVFIMKDNSTGLGKG----CSFVKFA 236
>gi|347965530|ref|XP_003435781.1| AGAP013048-PA [Anopheles gambiae str. PEST]
gi|333470469|gb|EGK97632.1| AGAP013048-PA [Anopheles gambiae str. PEST]
Length = 93
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 30/45 (66%)
Query: 29 KMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
K+FVG +P ++ +L FS+YG V++ NV+ DK TG S+G F
Sbjct: 17 KLFVGNLPWTVSTKELKTYFSKYGHVHSTNVIYDKSTGISRGYGF 61
>gi|395835423|ref|XP_003790679.1| PREDICTED: RNA-binding motif protein, X-linked 2-like [Otolemur
garnettii]
Length = 331
Score = 47.0 bits (110), Expect = 0.002, Method: Composition-based stats.
Identities = 21/44 (47%), Positives = 32/44 (72%)
Query: 30 MFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
+F+G +P + E D+ +FS+YG + NIN++RDK TG+SKG F
Sbjct: 38 IFLGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCF 81
>gi|375268714|ref|NP_001243518.1| RNA binding motif protein, X-linked 2 [Bos taurus]
gi|296471256|tpg|DAA13371.1| TPA: RNA binding motif protein, X-linked 2-like protein [Bos
taurus]
Length = 358
Score = 47.0 bits (110), Expect = 0.002, Method: Composition-based stats.
Identities = 21/44 (47%), Positives = 32/44 (72%)
Query: 30 MFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
+F+G +P + E D+ +FS+YG + NIN++RDK TG+SKG F
Sbjct: 58 IFLGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCF 101
>gi|148706792|gb|EDL38739.1| trinucleotide repeat containing 4, isoform CRA_e [Mus musculus]
Length = 447
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 28/40 (70%)
Query: 34 QIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
QIPR ++E DL +F ++GR++ + V++DK TG KG F
Sbjct: 14 QIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAF 53
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 26/45 (57%)
Query: 25 PDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSK 69
PD +F+ +P+ ++++ +MF +G V + V D+ T QSK
Sbjct: 359 PDGCNIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSK 403
>gi|452848098|gb|EME50030.1| hypothetical protein DOTSEDRAFT_122130, partial [Dothistroma
septosporum NZE10]
Length = 114
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 32/48 (66%)
Query: 26 DFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
D +++G +P + E D+ +FS+YG +IN++RDK TG+SKG F
Sbjct: 31 DTAYVYIGGLPFELSEGDILTIFSQYGNPVHINLVRDKETGKSKGFCF 78
>gi|347535511|ref|YP_004842936.1| putative RNA-binding protein RbpA [Flavobacterium branchiophilum
FL-15]
gi|345528669|emb|CCB68699.1| Putative RNA-binding protein RbpA [Flavobacterium branchiophilum
FL-15]
Length = 117
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 31/43 (72%)
Query: 28 IKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKG 70
+ +FVG +P S++EADL + F YG V ++ ++ DK TG+SKG
Sbjct: 1 MNIFVGSLPFSIEEADLKESFEAYGAVDSVKIITDKFTGRSKG 43
>gi|332852452|ref|XP_001156587.2| PREDICTED: ELAV-like protein 1 isoform 1 [Pan troglodytes]
gi|397477357|ref|XP_003810039.1| PREDICTED: ELAV-like protein 1 [Pan paniscus]
gi|426386983|ref|XP_004059958.1| PREDICTED: ELAV-like protein 1 isoform 2 [Gorilla gorilla gorilla]
gi|194375035|dbj|BAG62630.1| unnamed protein product [Homo sapiens]
Length = 353
Score = 47.0 bits (110), Expect = 0.002, Method: Composition-based stats.
Identities = 21/55 (38%), Positives = 34/55 (61%), Gaps = 3/55 (5%)
Query: 22 QPDPDFIK---MFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
+P + IK +++ +PR+M + D+ MFS +GR+ N VL D+ TG S+G F
Sbjct: 124 RPSSEVIKDANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAF 178
Score = 35.4 bits (80), Expect = 4.2, Method: Composition-based stats.
Identities = 16/44 (36%), Positives = 26/44 (59%)
Query: 30 MFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
+ V +P++M + +L +FS G V + ++RDKV G S G F
Sbjct: 49 LIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGF 92
>gi|225434618|ref|XP_002279321.1| PREDICTED: uncharacterized protein LOC100246760 [Vitis vinifera]
Length = 429
Score = 47.0 bits (110), Expect = 0.002, Method: Composition-based stats.
Identities = 23/46 (50%), Positives = 33/46 (71%)
Query: 30 MFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEA 75
+FVG IP + E DL +FS+YG + ++N++RDK TG+SKG F A
Sbjct: 38 VFVGGIPFDLTEGDLLAVFSQYGEIVDVNLVRDKGTGKSKGFAFVA 83
>gi|340057783|emb|CCC52132.1| putative RNA-binding protein [Trypanosoma vivax Y486]
Length = 120
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 29/45 (64%)
Query: 29 KMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
++FVGQ+ E D+ +F+ YG V +N+LRD+ T +SKG F
Sbjct: 9 RLFVGQLNFQATENDVRNIFAFYGHVLQVNLLRDRATNKSKGSAF 53
>gi|347970878|ref|XP_003436655.1| AGAP003899-PB [Anopheles gambiae str. PEST]
gi|333466414|gb|EGK96234.1| AGAP003899-PB [Anopheles gambiae str. PEST]
Length = 280
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 39/71 (54%), Gaps = 6/71 (8%)
Query: 3 REKRRECTYEYVRSMSLPEQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRD 62
R KR + +Y + P+ D +++ +PR++ E L +F +YG + N+LRD
Sbjct: 150 RNKRLKVSY------ARPQSDDIKETNLYITNLPRTITEEQLDIIFGKYGTIVQKNILRD 203
Query: 63 KVTGQSKGKIF 73
K+TGQ +G F
Sbjct: 204 KLTGQPRGVAF 214
>gi|357479035|ref|XP_003609803.1| FCA [Medicago truncatula]
gi|355510858|gb|AES92000.1| FCA [Medicago truncatula]
Length = 862
Score = 47.0 bits (110), Expect = 0.002, Method: Composition-based stats.
Identities = 21/55 (38%), Positives = 35/55 (63%), Gaps = 1/55 (1%)
Query: 20 PEQPDP-DFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
P+ D +F K+FVG +PR+ E D+ +F E+G V + +++D+ TGQ +G F
Sbjct: 148 PDHSDGGNFAKLFVGSVPRTATEEDIRPLFEEHGNVVEVALIKDRKTGQHQGCCF 202
>gi|359479959|ref|XP_002271329.2| PREDICTED: flowering time control protein FCA-like [Vitis
vinifera]
Length = 402
Score = 47.0 bits (110), Expect = 0.002, Method: Composition-based stats.
Identities = 21/55 (38%), Positives = 37/55 (67%), Gaps = 4/55 (7%)
Query: 27 FIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAAFLKIA 81
F+K++VG +PR++ E D+ +F E+G++ + +L+DK TGQ + E F+K A
Sbjct: 12 FVKLYVGCVPRTVTEEDIRSLFEEHGKIVEVVLLKDKRTGQQQ----ECCFVKYA 62
>gi|242790685|ref|XP_002481602.1| conserved hypothetical protein [Talaromyces stipitatus ATCC
10500]
gi|218718190|gb|EED17610.1| conserved hypothetical protein [Talaromyces stipitatus ATCC
10500]
Length = 285
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 35/54 (64%), Gaps = 4/54 (7%)
Query: 26 DFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAAFLK 79
D +++G +P + E D+ +FS+YG ++N++RDK TG+SKG AFLK
Sbjct: 31 DTAYIYIGGLPFDLSEGDIVTIFSQYGEPVHVNLVRDKDTGKSKG----FAFLK 80
>gi|110638796|ref|YP_679005.1| RNA binding protein [Cytophaga hutchinsonii ATCC 33406]
gi|110281477|gb|ABG59663.1| RNA binding protein [Cytophaga hutchinsonii ATCC 33406]
Length = 143
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 31/43 (72%)
Query: 28 IKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKG 70
+ +FVG +P S++E +L + F EYG V ++ ++ DK TG+SKG
Sbjct: 1 MNIFVGSLPFSLEENELREFFEEYGEVSSVKIISDKFTGRSKG 43
>gi|344247291|gb|EGW03395.1| ELAV-like protein 1 [Cricetulus griseus]
Length = 335
Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 21/55 (38%), Positives = 34/55 (61%), Gaps = 3/55 (5%)
Query: 22 QPDPDFIK---MFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
+P + IK +++ +PR+M + D+ MFS +GR+ N VL D+ TG S+G F
Sbjct: 89 RPSSEVIKDANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAF 143
Score = 35.8 bits (81), Expect = 3.4, Method: Composition-based stats.
Identities = 16/44 (36%), Positives = 26/44 (59%)
Query: 30 MFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
+ V +P++M + +L +FS G V + ++RDKV G S G F
Sbjct: 14 LIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGF 57
>gi|321262344|ref|XP_003195891.1| hypothetical protein CGB_H5040W [Cryptococcus gattii WM276]
gi|317462365|gb|ADV24104.1| Conserved hypothetical protein [Cryptococcus gattii WM276]
Length = 401
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 32/45 (71%)
Query: 26 DFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKG 70
D ++VG +P + E DL +FS++G + ++N++RDK TG+S+G
Sbjct: 29 DSAYIYVGGLPFELTEGDLITIFSQWGEIMDVNLVRDKETGKSRG 73
>gi|133248|sp|P19683.1|ROC4_NICSY RecName: Full=31 kDa ribonucleoprotein, chloroplastic; Flags:
Precursor
gi|19741|emb|CAA40364.1| 31kD chloroplast ribonucleoprotein [Nicotiana sylvestris]
gi|19756|emb|CAA37885.1| unnamed protein product [Nicotiana sylvestris]
Length = 315
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 37/54 (68%), Gaps = 3/54 (5%)
Query: 20 PEQPDPDF---IKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKG 70
PE+P F +++VG IP +D+A L ++FSE+G+V + V+ D+ TG+S+G
Sbjct: 219 PERPPRTFEQSYRIYVGNIPWGIDDARLEQLFSEHGKVVSARVVYDRETGRSRG 272
>gi|449304345|gb|EMD00352.1| hypothetical protein BAUCODRAFT_28706 [Baudoinia compniacensis
UAMH 10762]
Length = 304
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 35/54 (64%), Gaps = 4/54 (7%)
Query: 26 DFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAAFLK 79
D +++G +P + E D+ +FS+YG +IN++RDK TG+SKG AFLK
Sbjct: 31 DTAYIYIGGLPFELSEGDVLTIFSQYGNPVHINLVRDKETGKSKG----FAFLK 80
>gi|332264173|ref|XP_003281121.1| PREDICTED: ELAV-like protein 1 [Nomascus leucogenys]
Length = 326
Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 21/55 (38%), Positives = 34/55 (61%), Gaps = 3/55 (5%)
Query: 22 QPDPDFIK---MFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
+P + IK +++ +PR+M + D+ MFS +GR+ N VL D+ TG S+G F
Sbjct: 97 RPSSEVIKDANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAF 151
Score = 35.4 bits (80), Expect = 4.4, Method: Composition-based stats.
Identities = 16/44 (36%), Positives = 26/44 (59%)
Query: 30 MFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
+ V +P++M + +L +FS G V + ++RDKV G S G F
Sbjct: 22 LIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGF 65
>gi|301773130|ref|XP_002921959.1| PREDICTED: ELAV-like protein 1-like isoform 3 [Ailuropoda
melanoleuca]
Length = 339
Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 21/55 (38%), Positives = 34/55 (61%), Gaps = 3/55 (5%)
Query: 22 QPDPDFIK---MFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
+P + IK +++ +PR+M + D+ MFS +GR+ N VL D+ TG S+G F
Sbjct: 97 RPSSEVIKDANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAF 151
Score = 35.4 bits (80), Expect = 4.5, Method: Composition-based stats.
Identities = 16/44 (36%), Positives = 26/44 (59%)
Query: 30 MFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
+ V +P++M + +L +FS G V + ++RDKV G S G F
Sbjct: 22 LIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGF 65
>gi|281351269|gb|EFB26853.1| hypothetical protein PANDA_007127 [Ailuropoda melanoleuca]
Length = 334
Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 21/44 (47%), Positives = 32/44 (72%)
Query: 30 MFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
+F+G +P + E D+ +FS+YG + NIN++RDK TG+SKG F
Sbjct: 47 IFLGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCF 90
>gi|168054274|ref|XP_001779557.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162669038|gb|EDQ55633.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 213
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 33/52 (63%)
Query: 22 QPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
+P D K+FVG IP DEA +T +FS YG V + ++ D+ +G+S+G F
Sbjct: 121 RPRDDPNKLFVGNIPWGCDEAAMTSLFSPYGSVVDAKIVYDRDSGRSRGFGF 172
Score = 40.8 bits (94), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 31/45 (68%)
Query: 29 KMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
K++VG +P + D A L ++ S++G V + V+ DK++G+S+G F
Sbjct: 24 KVYVGNLPWTCDSAQLAEICSQHGTVDVVEVIYDKLSGRSRGFAF 68
>gi|1022961|gb|AAB41913.1| HuR RNA binding protein [Homo sapiens]
Length = 326
Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 21/55 (38%), Positives = 34/55 (61%), Gaps = 3/55 (5%)
Query: 22 QPDPDFIK---MFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
+P + IK +++ +PR+M + D+ MFS +GR+ N VL D+ TG S+G F
Sbjct: 97 RPSSEVIKDANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAF 151
Score = 35.4 bits (80), Expect = 4.4, Method: Composition-based stats.
Identities = 16/44 (36%), Positives = 26/44 (59%)
Query: 30 MFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
+ V +P++M + +L +FS G V + ++RDKV G S G F
Sbjct: 22 LIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGF 65
>gi|158285093|ref|XP_560351.3| AGAP003899-PA [Anopheles gambiae str. PEST]
gi|98986313|tpe|CAJ55784.1| TPA: sex-lethal [Anopheles gambiae]
gi|157020733|gb|EAL41988.3| AGAP003899-PA [Anopheles gambiae str. PEST]
Length = 302
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 39/71 (54%), Gaps = 6/71 (8%)
Query: 3 REKRRECTYEYVRSMSLPEQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRD 62
R KR + +Y + P+ D +++ +PR++ E L +F +YG + N+LRD
Sbjct: 172 RNKRLKVSY------ARPQSDDIKETNLYITNLPRTITEEQLDIIFGKYGTIVQKNILRD 225
Query: 63 KVTGQSKGKIF 73
K+TGQ +G F
Sbjct: 226 KLTGQPRGVAF 236
>gi|38201714|ref|NP_001410.2| ELAV-like protein 1 [Homo sapiens]
gi|114675067|ref|XP_001156643.1| PREDICTED: ELAV-like protein 1 isoform 2 [Pan troglodytes]
gi|395750352|ref|XP_002828622.2| PREDICTED: ELAV-like protein 1 [Pongo abelii]
gi|395841768|ref|XP_003793705.1| PREDICTED: ELAV-like protein 1 [Otolemur garnettii]
gi|402914021|ref|XP_003919435.1| PREDICTED: ELAV-like protein 1 [Papio anubis]
gi|403296075|ref|XP_003938946.1| PREDICTED: ELAV-like protein 1 [Saimiri boliviensis boliviensis]
gi|426386981|ref|XP_004059957.1| PREDICTED: ELAV-like protein 1 isoform 1 [Gorilla gorilla gorilla]
gi|20981691|sp|Q15717.2|ELAV1_HUMAN RecName: Full=ELAV-like protein 1; AltName: Full=Hu-antigen R;
Short=HuR
gi|13097228|gb|AAH03376.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 1 (Hu
antigen R) [Homo sapiens]
gi|32879929|gb|AAP88795.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 1 (Hu
antigen R) [Homo sapiens]
gi|60654991|gb|AAX32059.1| ELAV-like 1 [synthetic construct]
gi|60654993|gb|AAX32060.1| ELAV-like 1 [synthetic construct]
gi|60654995|gb|AAX32061.1| ELAV-like 1 [synthetic construct]
gi|60654997|gb|AAX32062.1| ELAV-like 1 [synthetic construct]
gi|119589355|gb|EAW68949.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 1 (Hu
antigen R), isoform CRA_a [Homo sapiens]
gi|157928080|gb|ABW03336.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 1 (Hu
antigen R) [synthetic construct]
gi|157928791|gb|ABW03681.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 1 (Hu
antigen R) [synthetic construct]
gi|208966198|dbj|BAG73113.1| ELAV-like 1protein [synthetic construct]
gi|355703066|gb|EHH29557.1| hypothetical protein EGK_10021 [Macaca mulatta]
gi|355755385|gb|EHH59132.1| hypothetical protein EGM_09177 [Macaca fascicularis]
gi|380784245|gb|AFE63998.1| ELAV-like protein 1 [Macaca mulatta]
gi|383416395|gb|AFH31411.1| ELAV-like protein 1 [Macaca mulatta]
gi|384945706|gb|AFI36458.1| ELAV-like protein 1 [Macaca mulatta]
gi|410212674|gb|JAA03556.1| ELAV (embryonic lethal, abnormal vision)-like 1 (Hu antigen R) [Pan
troglodytes]
gi|410265350|gb|JAA20641.1| ELAV (embryonic lethal, abnormal vision)-like 1 (Hu antigen R) [Pan
troglodytes]
gi|410305890|gb|JAA31545.1| ELAV (embryonic lethal, abnormal vision)-like 1 (Hu antigen R) [Pan
troglodytes]
gi|410342973|gb|JAA40433.1| ELAV (embryonic lethal, abnormal vision)-like 1 (Hu antigen R) [Pan
troglodytes]
Length = 326
Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 21/55 (38%), Positives = 34/55 (61%), Gaps = 3/55 (5%)
Query: 22 QPDPDFIK---MFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
+P + IK +++ +PR+M + D+ MFS +GR+ N VL D+ TG S+G F
Sbjct: 97 RPSSEVIKDANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAF 151
Score = 35.4 bits (80), Expect = 4.4, Method: Composition-based stats.
Identities = 16/44 (36%), Positives = 26/44 (59%)
Query: 30 MFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
+ V +P++M + +L +FS G V + ++RDKV G S G F
Sbjct: 22 LIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGF 65
>gi|297632376|ref|NP_001172077.1| ELAV-like protein 1 [Oryctolagus cuniculus]
gi|296399062|gb|ADH10369.1| embryonic lethal abnormal vision-like 1 protein [Oryctolagus
cuniculus]
Length = 326
Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 21/55 (38%), Positives = 34/55 (61%), Gaps = 3/55 (5%)
Query: 22 QPDPDFIK---MFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
+P + IK +++ +PR+M + D+ MFS +GR+ N VL D+ TG S+G F
Sbjct: 97 RPSSEVIKDANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAF 151
Score = 35.8 bits (81), Expect = 3.4, Method: Composition-based stats.
Identities = 16/44 (36%), Positives = 26/44 (59%)
Query: 30 MFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
+ V +P++M + +L +FS G V + ++RDKV G S G F
Sbjct: 22 LIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGF 65
>gi|343959022|dbj|BAK63366.1| ELAV-like protein 1 [Pan troglodytes]
Length = 305
Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 21/55 (38%), Positives = 34/55 (61%), Gaps = 3/55 (5%)
Query: 22 QPDPDFIK---MFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
+P + IK +++ +PR+M + D+ MFS +GR+ N VL D+ TG S+G F
Sbjct: 97 RPSSEVIKDANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAF 151
Score = 35.4 bits (80), Expect = 4.4, Method: Composition-based stats.
Identities = 16/44 (36%), Positives = 26/44 (59%)
Query: 30 MFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
+ V +P++M + +L +FS G V + ++RDKV G S G F
Sbjct: 22 LIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGF 65
>gi|242037549|ref|XP_002466169.1| hypothetical protein SORBIDRAFT_01g002770 [Sorghum bicolor]
gi|241920023|gb|EER93167.1| hypothetical protein SORBIDRAFT_01g002770 [Sorghum bicolor]
Length = 298
Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 22/50 (44%), Positives = 34/50 (68%)
Query: 26 DFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEA 75
D ++VG +P + E DL +F++YG V ++N++RDK TG+SKG F A
Sbjct: 34 DSAYVYVGGVPFDLTEGDLLAIFAQYGEVVDVNLVRDKGTGKSKGFAFLA 83
>gi|126323791|ref|XP_001366151.1| PREDICTED: ELAV-like protein 1 [Monodelphis domestica]
Length = 326
Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 21/55 (38%), Positives = 34/55 (61%), Gaps = 3/55 (5%)
Query: 22 QPDPDFIK---MFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
+P + IK +++ +PR+M + D+ MFS +GR+ N VL D+ TG S+G F
Sbjct: 97 RPSSEVIKDANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAF 151
Score = 35.4 bits (80), Expect = 4.5, Method: Composition-based stats.
Identities = 16/44 (36%), Positives = 26/44 (59%)
Query: 30 MFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
+ V +P++M + +L +FS G V + ++RDKV G S G F
Sbjct: 22 LIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGF 65
>gi|67536990|ref|XP_662269.1| hypothetical protein AN4665.2 [Aspergillus nidulans FGSC A4]
gi|40741517|gb|EAA60707.1| hypothetical protein AN4665.2 [Aspergillus nidulans FGSC A4]
gi|259482500|tpe|CBF77042.1| TPA: hypothetical protein ANIA_04665 [Aspergillus nidulans FGSC
A4]
Length = 279
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 35/54 (64%), Gaps = 4/54 (7%)
Query: 26 DFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAAFLK 79
D +++G +P + E D+ +FS+YG +IN++RDK TG+S+G AFLK
Sbjct: 31 DTAYIYIGGLPFDLSEGDIVTIFSQYGEPVHINLVRDKETGKSRG----FAFLK 80
>gi|226492020|ref|NP_001152526.1| LOC100286166 [Zea mays]
gi|195657131|gb|ACG48033.1| RNA binding protein [Zea mays]
Length = 463
Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 21/46 (45%), Positives = 30/46 (65%)
Query: 28 IKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
+K+FVGQ+P+ M EADL +F E V + V++DK T S+G F
Sbjct: 30 VKLFVGQVPKHMAEADLLALFREVAAVDEVTVIKDKATKVSRGCCF 75
Score = 38.5 bits (88), Expect = 0.51, Method: Composition-based stats.
Identities = 22/63 (34%), Positives = 36/63 (57%), Gaps = 9/63 (14%)
Query: 29 KMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAAFLKI-----ARA 83
K+F+G +P+++ + +LT +FS+YG V ++ +LR G AF+K A A
Sbjct: 129 KLFIGMLPKNVTDTELTDLFSKYGNVTDLQILRGSQQTNKAG----CAFIKYQTKDQALA 184
Query: 84 AIE 86
AIE
Sbjct: 185 AIE 187
Score = 34.7 bits (78), Expect = 7.9, Method: Composition-based stats.
Identities = 16/45 (35%), Positives = 24/45 (53%)
Query: 25 PDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSK 69
P +F+ IP+ + +L+ F +GRV + V DK TG SK
Sbjct: 372 PPGANLFIYHIPQEYGDQELSSAFQSFGRVVSAKVFVDKATGVSK 416
>gi|73986922|ref|XP_854218.1| PREDICTED: ELAV-like protein 1 isoform 1 [Canis lupus familiaris]
gi|301773126|ref|XP_002921957.1| PREDICTED: ELAV-like protein 1-like isoform 1 [Ailuropoda
melanoleuca]
gi|344299314|ref|XP_003421331.1| PREDICTED: ELAV-like protein 1 [Loxodonta africana]
gi|281349989|gb|EFB25573.1| hypothetical protein PANDA_010904 [Ailuropoda melanoleuca]
Length = 326
Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 21/55 (38%), Positives = 34/55 (61%), Gaps = 3/55 (5%)
Query: 22 QPDPDFIK---MFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
+P + IK +++ +PR+M + D+ MFS +GR+ N VL D+ TG S+G F
Sbjct: 97 RPSSEVIKDANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAF 151
Score = 35.4 bits (80), Expect = 4.5, Method: Composition-based stats.
Identities = 16/44 (36%), Positives = 26/44 (59%)
Query: 30 MFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
+ V +P++M + +L +FS G V + ++RDKV G S G F
Sbjct: 22 LIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGF 65
>gi|410950299|ref|XP_003981845.1| PREDICTED: ELAV-like protein 1 [Felis catus]
Length = 336
Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 21/55 (38%), Positives = 34/55 (61%), Gaps = 3/55 (5%)
Query: 22 QPDPDFIK---MFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
+P + IK +++ +PR+M + D+ MFS +GR+ N VL D+ TG S+G F
Sbjct: 107 RPSSEVIKDANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAF 161
Score = 35.4 bits (80), Expect = 4.5, Method: Composition-based stats.
Identities = 16/44 (36%), Positives = 26/44 (59%)
Query: 30 MFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
+ V +P++M + +L +FS G V + ++RDKV G S G F
Sbjct: 32 LIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGF 75
>gi|351701320|gb|EHB04239.1| ELAV-like protein 1, partial [Heterocephalus glaber]
Length = 329
Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 21/55 (38%), Positives = 34/55 (61%), Gaps = 3/55 (5%)
Query: 22 QPDPDFIK---MFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
+P + IK +++ +PR+M + D+ MFS +GR+ N VL D+ TG S+G F
Sbjct: 100 RPSSEVIKDANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAF 154
Score = 35.4 bits (80), Expect = 4.5, Method: Composition-based stats.
Identities = 16/44 (36%), Positives = 26/44 (59%)
Query: 30 MFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
+ V +P++M + +L +FS G V + ++RDKV G S G F
Sbjct: 25 LIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGF 68
>gi|149716413|ref|XP_001497933.1| PREDICTED: ELAV-like protein 1 [Equus caballus]
Length = 326
Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 21/55 (38%), Positives = 34/55 (61%), Gaps = 3/55 (5%)
Query: 22 QPDPDFIK---MFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
+P + IK +++ +PR+M + D+ MFS +GR+ N VL D+ TG S+G F
Sbjct: 97 RPSSEVIKDANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAF 151
Score = 35.4 bits (80), Expect = 4.5, Method: Composition-based stats.
Identities = 16/44 (36%), Positives = 26/44 (59%)
Query: 30 MFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
+ V +P++M + +L +FS G V + ++RDKV G S G F
Sbjct: 22 LIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGF 65
>gi|67968717|dbj|BAE00717.1| unnamed protein product [Macaca fascicularis]
Length = 326
Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 21/55 (38%), Positives = 34/55 (61%), Gaps = 3/55 (5%)
Query: 22 QPDPDFIK---MFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
+P + IK +++ +PR+M + D+ MFS +GR+ N VL D+ TG S+G F
Sbjct: 97 RPSSEVIKDANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAF 151
Score = 35.4 bits (80), Expect = 4.5, Method: Composition-based stats.
Identities = 16/44 (36%), Positives = 26/44 (59%)
Query: 30 MFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
+ V +P++M + +L +FS G V + ++RDKV G S G F
Sbjct: 22 LIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGF 65
>gi|28899709|ref|NP_799314.1| RNA-binding protein [Vibrio parahaemolyticus RIMD 2210633]
gi|260361661|ref|ZP_05774688.1| RNA-binding protein [Vibrio parahaemolyticus K5030]
gi|260897205|ref|ZP_05905701.1| RNA-binding protein [Vibrio parahaemolyticus Peru-466]
gi|260901358|ref|ZP_05909753.1| RNA-binding protein [Vibrio parahaemolyticus AQ4037]
gi|417320748|ref|ZP_12107290.1| RNA-binding protein [Vibrio parahaemolyticus 10329]
gi|28807961|dbj|BAC61198.1| RNA-binding protein [Vibrio parahaemolyticus RIMD 2210633]
gi|308089332|gb|EFO39027.1| RNA-binding protein [Vibrio parahaemolyticus Peru-466]
gi|308108439|gb|EFO45979.1| RNA-binding protein [Vibrio parahaemolyticus AQ4037]
gi|308111298|gb|EFO48838.1| RNA-binding protein [Vibrio parahaemolyticus K5030]
gi|328472463|gb|EGF43329.1| RNA-binding protein [Vibrio parahaemolyticus 10329]
Length = 151
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 34/51 (66%)
Query: 20 PEQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKG 70
P + DP ++VG +P +E+ + +F+EYG+V+ + +++DK TG+ +G
Sbjct: 54 PTESDPSTKTLYVGNLPYKANESHVRDLFAEYGQVFAVRLMKDKRTGKRRG 104
>gi|405122146|gb|AFR96913.1| RNA-binding protein [Cryptococcus neoformans var. grubii H99]
Length = 508
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 31/41 (75%)
Query: 30 MFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKG 70
++VG +P + E DL +FS++G + ++N++RDK TG+S+G
Sbjct: 162 IYVGGLPFELTEGDLITIFSQWGEIMDVNLVRDKETGKSRG 202
>gi|399031232|ref|ZP_10731328.1| RRM domain-containing RNA-binding protein [Flavobacterium sp.
CF136]
gi|398070499|gb|EJL61796.1| RRM domain-containing RNA-binding protein [Flavobacterium sp.
CF136]
Length = 119
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 31/43 (72%)
Query: 28 IKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKG 70
+ +FVG +P S++EADL + F YG V ++ ++ DK TG+SKG
Sbjct: 1 MNIFVGSLPFSIEEADLRESFEAYGAVDSVKIITDKFTGRSKG 43
>gi|381186866|ref|ZP_09894434.1| RNA-binding region RNP-1 [Flavobacterium frigoris PS1]
gi|379651172|gb|EIA09739.1| RNA-binding region RNP-1 [Flavobacterium frigoris PS1]
Length = 120
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 31/43 (72%)
Query: 28 IKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKG 70
+ +FVG +P S++EADL + F YG V ++ ++ DK TG+SKG
Sbjct: 1 MNIFVGSLPFSIEEADLRESFEAYGAVDSVKIITDKFTGRSKG 43
>gi|432119731|gb|ELK38615.1| ELAV-like protein 1 [Myotis davidii]
Length = 296
Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 21/55 (38%), Positives = 34/55 (61%), Gaps = 3/55 (5%)
Query: 22 QPDPDFIK---MFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
+P + IK +++ +PR+M + D+ MFS +GR+ N VL D+ TG S+G F
Sbjct: 67 RPSSEVIKDANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAF 121
>gi|348510833|ref|XP_003442949.1| PREDICTED: ELAV-like protein 1-like [Oreochromis niloticus]
Length = 341
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 34/55 (61%), Gaps = 3/55 (5%)
Query: 22 QPDPDFIK---MFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
+P D IK +++ +P++M + D+ MFS YGR+ N VL D+ TG S+G F
Sbjct: 112 RPSSDTIKDANLYISGLPKNMTQKDVEDMFSRYGRIINSRVLVDQGTGSSRGVAF 166
Score = 35.0 bits (79), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 26/45 (57%)
Query: 29 KMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
+ V +P++M + +L +FS G V + ++RDKV G S G F
Sbjct: 36 NLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGF 80
>gi|297793411|ref|XP_002864590.1| hypothetical protein ARALYDRAFT_358097 [Arabidopsis lyrata subsp.
lyrata]
gi|297310425|gb|EFH40849.1| hypothetical protein ARALYDRAFT_358097 [Arabidopsis lyrata subsp.
lyrata]
Length = 173
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 33/51 (64%)
Query: 25 PDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEA 75
D ++VG++ + E DL +F++YG V ++N+ RDK TG+SKG F A
Sbjct: 33 KDSAYVYVGELLYDLTEGDLLAVFAQYGEVVDVNLARDKGTGKSKGFAFVA 83
>gi|345310228|ref|XP_001519520.2| PREDICTED: MKI67 FHA domain-interacting nucleolar
phosphoprotein-like, partial [Ornithorhynchus anatinus]
Length = 222
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 29/44 (65%)
Query: 30 MFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
+++G IPR + E+ L K F+++G V N+ + R K TG SKG F
Sbjct: 6 IYLGHIPRELSESQLRKYFTQFGTVTNLKLSRSKKTGNSKGYAF 49
>gi|398412159|ref|XP_003857408.1| hypothetical protein MYCGRDRAFT_107156 [Zymoseptoria tritici
IPO323]
gi|339477293|gb|EGP92384.1| hypothetical protein MYCGRDRAFT_107156 [Zymoseptoria tritici
IPO323]
Length = 329
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 32/48 (66%)
Query: 26 DFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
D +++G +P + E D+ +FS+YG +IN++RDK TG+S+G F
Sbjct: 31 DTAYLYIGGLPFELSEGDILTIFSQYGNPVHINLVRDKETGKSRGFCF 78
>gi|308094750|ref|ZP_05891733.2| RNA-binding protein [Vibrio parahaemolyticus AN-5034]
gi|433659020|ref|YP_007276399.1| RNA-binding protein [Vibrio parahaemolyticus BB22OP]
gi|308092824|gb|EFO42519.1| RNA-binding protein [Vibrio parahaemolyticus AN-5034]
gi|432509708|gb|AGB11225.1| RNA-binding protein [Vibrio parahaemolyticus BB22OP]
Length = 133
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 34/51 (66%)
Query: 20 PEQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKG 70
P + DP ++VG +P +E+ + +F+EYG+V+ + +++DK TG+ +G
Sbjct: 36 PTESDPSTKTLYVGNLPYKANESHVRDLFAEYGQVFAVRLMKDKRTGKRRG 86
>gi|429328279|gb|AFZ80039.1| RNA recognition motif domain containing protein [Babesia equi]
Length = 525
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 32/46 (69%)
Query: 28 IKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
IK+F+ +IP+S +E+++ KMF E+G+V + V+RDK T K F
Sbjct: 70 IKLFLARIPKSYEESEIKKMFEEFGKVKEVAVIRDKNTNAHKCCAF 115
Score = 43.1 bits (100), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 37/53 (69%), Gaps = 5/53 (9%)
Query: 29 KMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAAFLKIA 81
K+FVG +P+++DEA + ++F +YG + ++ +++D+ G KG AF+K+A
Sbjct: 171 KLFVGSLPKTVDEAAIRELFKDYGTLDDVYIMKDQA-GNGKG----CAFVKMA 218
Score = 39.7 bits (91), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 26/49 (53%)
Query: 25 PDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
P +F+ IP DL + FS++GRV + + DK TG+ KG F
Sbjct: 423 PPGSNLFIFHIPNEWTYNDLVRSFSQFGRVISARIATDKSTGRHKGYAF 471
>gi|388604324|pdb|4EGL|A Chain A, Crystal Structure Of Two Tandem Rna Recognition Motifs Of
Human Antigen R
Length = 177
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 34/55 (61%), Gaps = 3/55 (5%)
Query: 22 QPDPDFIK---MFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
+P + IK +++ +PR+M + D+ MFS +GR+ N VL D+ TG S+G F
Sbjct: 80 RPSSEVIKDANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAF 134
Score = 35.8 bits (81), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 26/45 (57%)
Query: 29 KMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
+ V +P++M + +L +FS G V + ++RDKV G S G F
Sbjct: 4 NLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGF 48
>gi|223940412|ref|ZP_03632265.1| RNP-1 like RNA-binding protein [bacterium Ellin514]
gi|223890907|gb|EEF57415.1| RNP-1 like RNA-binding protein [bacterium Ellin514]
Length = 118
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 29/45 (64%)
Query: 29 KMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
K+FVG +P S E DL FS G V +N+++D+ TG+S+G F
Sbjct: 4 KLFVGNLPFSTTENDLQDHFSGAGTVIAVNIMQDRATGRSRGFAF 48
>gi|156101369|ref|XP_001616378.1| RNA-binding protein [Plasmodium vivax Sal-1]
gi|148805252|gb|EDL46651.1| RNA-binding protein, putative [Plasmodium vivax]
Length = 513
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 38/57 (66%), Gaps = 4/57 (7%)
Query: 25 PDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAAFLKIA 81
P IK+F+G++P++M+E L +F E+G V + ++RDK+T K +AF+K+A
Sbjct: 85 PVSIKLFIGRVPKTMEEEQLRPIFEEFGIVKEVVIIRDKITNIHK----SSAFVKMA 137
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 34/56 (60%), Gaps = 4/56 (7%)
Query: 26 DFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAAFLKIA 81
D K+F+G +P+S+ E + +MFS YG V + +++D TG KG +F+K A
Sbjct: 185 DQAKLFIGSLPKSITEESVKEMFSPYGSVEEVFIMKDNSTGLGKG----CSFVKFA 236
Score = 34.7 bits (78), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Query: 18 SLPEQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAAF 77
+L + P +F+ +P + DL + FS +G + + + +K TG+++G F ++
Sbjct: 362 NLSDSSGPPGANLFIFHVPNEWHQTDLIQAFSPFGELLSARIATEKSTGRNRGFAF-VSY 420
Query: 78 LKIARAA 84
I AA
Sbjct: 421 ESIESAA 427
>gi|395007942|ref|ZP_10391636.1| RRM domain-containing RNA-binding protein [Acidovorax sp. CF316]
gi|394314048|gb|EJE51000.1| RRM domain-containing RNA-binding protein [Acidovorax sp. CF316]
Length = 117
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 39/58 (67%), Gaps = 1/58 (1%)
Query: 29 KMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF-EAAFLKIARAAI 85
K++VG +P S+ ++ L FSE+G V + V+ D+ TG+SKG F E A ++A+AAI
Sbjct: 4 KIYVGNLPYSVTDSTLESNFSEFGNVTSAKVMMDRETGRSKGFGFVEMASAEVAQAAI 61
>gi|168039508|ref|XP_001772239.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162676409|gb|EDQ62892.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 507
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 42/74 (56%), Gaps = 4/74 (5%)
Query: 15 RSMSLPEQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFE 74
+S L ++P P ++FVG I R E DL + S G VY + +L+DK TGQ+KG F
Sbjct: 113 KSGDLLKRP-PHGSEIFVGGITRDTTEEDLRTLCSSCGDVYEVRLLKDKDTGQNKGYAF- 170
Query: 75 AAFL--KIARAAIE 86
FL + A AIE
Sbjct: 171 VTFLNEECAEKAIE 184
>gi|334349632|ref|XP_001381460.2| PREDICTED: RNA-binding motif protein, X-linked 2-like, partial
[Monodelphis domestica]
Length = 332
Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 20/42 (47%), Positives = 30/42 (71%)
Query: 32 VGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
+G +P + E D+ +FS+YG + NIN++RDK TG+SKG F
Sbjct: 1 LGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCF 42
>gi|26354232|dbj|BAC40744.1| unnamed protein product [Mus musculus]
Length = 305
Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 21/55 (38%), Positives = 34/55 (61%), Gaps = 3/55 (5%)
Query: 22 QPDPDFIK---MFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
+P + IK +++ +PR+M + D+ MFS +GR+ N VL D+ TG S+G F
Sbjct: 76 RPSSEVIKDANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAF 130
Score = 35.4 bits (80), Expect = 4.0, Method: Composition-based stats.
Identities = 16/44 (36%), Positives = 26/44 (59%)
Query: 30 MFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
+ V +P++M + +L +FS G V + ++RDKV G S G F
Sbjct: 1 LIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGF 44
>gi|74179923|dbj|BAE36520.1| unnamed protein product [Mus musculus]
Length = 308
Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 21/55 (38%), Positives = 34/55 (61%), Gaps = 3/55 (5%)
Query: 22 QPDPDFIK---MFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
+P + IK +++ +PR+M + D+ MFS +GR+ N VL D+ TG S+G F
Sbjct: 79 RPSSEVIKDANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAF 133
>gi|74138233|dbj|BAE28602.1| unnamed protein product [Mus musculus]
Length = 326
Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 21/55 (38%), Positives = 33/55 (60%), Gaps = 3/55 (5%)
Query: 22 QPDPDFIK---MFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
P + IK +++ +PR+M + D+ MFS +GR+ N VL D+ TG S+G F
Sbjct: 97 HPSSEVIKDANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAF 151
Score = 35.8 bits (81), Expect = 3.5, Method: Composition-based stats.
Identities = 16/44 (36%), Positives = 26/44 (59%)
Query: 30 MFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
+ V +P++M + +L +FS G V + ++RDKV G S G F
Sbjct: 22 LIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGF 65
>gi|453088501|gb|EMF16541.1| RRM_1-domain-containing protein, partial [Mycosphaerella
populorum SO2202]
Length = 114
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 32/48 (66%)
Query: 26 DFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
D +++G +P + E D+ +FS+YG +IN++RDK TG+S+G F
Sbjct: 31 DTAYLYIGGLPFELSEGDILTIFSQYGNPVHINLVRDKDTGKSRGFCF 78
>gi|388326834|pdb|4ED5|A Chain A, Crystal Structure Of The Two N-Terminal Rrm Domains Of Hur
Complexed With Rna
gi|388326835|pdb|4ED5|B Chain B, Crystal Structure Of The Two N-Terminal Rrm Domains Of Hur
Complexed With Rna
Length = 177
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 34/55 (61%), Gaps = 3/55 (5%)
Query: 22 QPDPDFIK---MFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
+P + IK +++ +PR+M + D+ MFS +GR+ N VL D+ TG S+G F
Sbjct: 80 RPSSEVIKDANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAF 134
Score = 35.4 bits (80), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 26/45 (57%)
Query: 29 KMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
+ V +P++M + +L +FS G V + ++RDKV G S G F
Sbjct: 4 NLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGF 48
>gi|26347149|dbj|BAC37223.1| unnamed protein product [Mus musculus]
Length = 326
Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 21/55 (38%), Positives = 34/55 (61%), Gaps = 3/55 (5%)
Query: 22 QPDPDFIK---MFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
+P + IK +++ +PR+M + D+ MFS +GR+ N VL D+ TG S+G F
Sbjct: 97 RPSSEVIKDANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAF 151
>gi|150865863|ref|XP_001385249.2| hypothetical protein PICST_32340 [Scheffersomyces stipitis CBS
6054]
gi|149387119|gb|ABN67220.2| predicted protein [Scheffersomyces stipitis CBS 6054]
Length = 314
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 49/83 (59%), Gaps = 11/83 (13%)
Query: 2 GREK---RRECTYEYVRSMSLPE---QPDPDFIK-----MFVGQIPRSMDEADLTKMFSE 50
REK +RE +R + PE Q + +F+K +FV ++ S+ E D++K FS+
Sbjct: 79 AREKQLLKRESFKRQLREWNDPEILHQNEKEFMKDPYRTIFVSRLDFSLTELDISKHFSK 138
Query: 51 YGRVYNINVLRDKVTGQSKGKIF 73
YG + ++ ++RD VTG+S+G F
Sbjct: 139 YGVIESVRIIRDSVTGKSRGYGF 161
>gi|417409800|gb|JAA51391.1| Putative rna-binding protein elav/hu rrm superfamily, partial
[Desmodus rotundus]
Length = 336
Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 21/55 (38%), Positives = 34/55 (61%), Gaps = 3/55 (5%)
Query: 22 QPDPDFIK---MFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
+P + IK +++ +PR+M + D+ MFS +GR+ N VL D+ TG S+G F
Sbjct: 107 RPSSEVIKDANLYISGLPRNMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAF 161
Score = 35.4 bits (80), Expect = 4.4, Method: Composition-based stats.
Identities = 16/44 (36%), Positives = 26/44 (59%)
Query: 30 MFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
+ V +P++M + +L +FS G V + ++RDKV G S G F
Sbjct: 32 LIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGF 75
>gi|60459259|gb|AAX20016.1| FCA gamma [Pisum sativum]
Length = 743
Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 19/48 (39%), Positives = 32/48 (66%)
Query: 26 DFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
+F K+FVG +PR+ E D+ +F E+G V + +++D+ TGQ +G F
Sbjct: 89 NFAKLFVGSVPRTATEEDIRPLFEEHGNVIEVALIKDRKTGQHQGCCF 136
>gi|348504908|ref|XP_003440003.1| PREDICTED: ELAV-like protein 1-like isoform 2 [Oreochromis
niloticus]
Length = 361
Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 21/55 (38%), Positives = 34/55 (61%), Gaps = 3/55 (5%)
Query: 22 QPDPDFIK---MFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
+P D IK +++ +PR++ + D+ MFS YGR+ N VL D+ +G S+G F
Sbjct: 134 RPSSDAIKDANLYISGLPRTLSQQDVEDMFSHYGRIINSRVLVDQASGLSRGVAF 188
Score = 36.6 bits (83), Expect = 1.8, Method: Composition-based stats.
Identities = 17/44 (38%), Positives = 26/44 (59%)
Query: 30 MFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
+ V +P+SM + +L +FS G V + ++RDKV G S G F
Sbjct: 59 LIVNYLPQSMSQDELRSLFSSVGEVESAKLIRDKVAGHSLGYGF 102
Score = 34.3 bits (77), Expect = 9.2, Method: Composition-based stats.
Identities = 16/41 (39%), Positives = 25/41 (60%)
Query: 30 MFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKG 70
+F+ + + DEA L +MF +G V N+ V+RD T + KG
Sbjct: 281 IFIYNLGQEADEAMLWQMFGPFGAVLNVKVIRDFNTNKCKG 321
>gi|212274649|ref|NP_001130287.1| uncharacterized protein LOC100191381 [Zea mays]
gi|194688754|gb|ACF78461.1| unknown [Zea mays]
gi|414870130|tpg|DAA48687.1| TPA: ribonucleoprotein [Zea mays]
Length = 289
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
Query: 20 PEQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
P Q P F + +VG +P D++ L ++FSEYG V N V+ D+ TG+S+G F
Sbjct: 198 PRQFAPAF-RAYVGNLPWQADDSRLVQLFSEYGEVVNAAVVYDRETGRSRGFGF 250
Score = 36.2 bits (82), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 29/49 (59%)
Query: 25 PDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
P+ K++VG +P ++ L ++F + G V V+ +K TGQS+G F
Sbjct: 108 PEEAKVYVGNLPYDIESEGLAQLFDQAGVVEVAEVIYNKETGQSRGFGF 156
>gi|115497832|ref|NP_001069922.1| ELAV-like protein 1 [Bos taurus]
gi|261244966|ref|NP_001159666.1| ELAV-like protein 1 [Ovis aries]
gi|73587279|gb|AAI02496.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 1 (Hu
antigen R) [Bos taurus]
gi|256665397|gb|ACV04844.1| ELAV-like protein 1 [Ovis aries]
gi|296485836|tpg|DAA27951.1| TPA: ELAV-like 1 (Hu antigen R) [Bos taurus]
Length = 326
Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 21/55 (38%), Positives = 34/55 (61%), Gaps = 3/55 (5%)
Query: 22 QPDPDFIK---MFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
+P + IK +++ +PR+M + D+ MFS +GR+ N VL D+ TG S+G F
Sbjct: 97 RPSSEVIKDANLYISGLPRNMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAF 151
Score = 35.4 bits (80), Expect = 4.5, Method: Composition-based stats.
Identities = 16/44 (36%), Positives = 26/44 (59%)
Query: 30 MFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
+ V +P++M + +L +FS G V + ++RDKV G S G F
Sbjct: 22 LIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGF 65
>gi|297733663|emb|CBI14910.3| unnamed protein product [Vitis vinifera]
Length = 306
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 38/57 (66%), Gaps = 5/57 (8%)
Query: 18 SLPEQP----DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKG 70
S PE+P +P F +M+VG +P +D A L ++FSE+G+V V+ D+ TG+S+G
Sbjct: 208 SQPERPPRVFEPAF-RMYVGNLPWDVDSARLEQVFSEHGKVVEARVVFDRETGRSRG 263
>gi|225456840|ref|XP_002278832.1| PREDICTED: 31 kDa ribonucleoprotein, chloroplastic [Vitis vinifera]
Length = 327
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 38/57 (66%), Gaps = 5/57 (8%)
Query: 18 SLPEQP----DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKG 70
S PE+P +P F +M+VG +P +D A L ++FSE+G+V V+ D+ TG+S+G
Sbjct: 229 SQPERPPRVFEPAF-RMYVGNLPWDVDSARLEQVFSEHGKVVEARVVFDRETGRSRG 284
>gi|395802857|ref|ZP_10482109.1| RNP-1 like RNA-binding protein [Flavobacterium sp. F52]
gi|395435298|gb|EJG01240.1| RNP-1 like RNA-binding protein [Flavobacterium sp. F52]
Length = 114
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 31/43 (72%)
Query: 28 IKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKG 70
+ +FVG +P S++EADL + F YG V ++ ++ DK TG+SKG
Sbjct: 1 MNIFVGSLPFSIEEADLRESFEAYGTVDSVKIITDKFTGRSKG 43
>gi|195624584|gb|ACG34122.1| ribonucleoprotein [Zea mays]
Length = 289
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
Query: 20 PEQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
P Q P F + +VG +P D++ L ++FSEYG V N V+ D+ TG+S+G F
Sbjct: 198 PRQFAPAF-RAYVGNLPWQADDSRLVQLFSEYGEVVNAAVVYDRETGRSRGFGF 250
Score = 36.2 bits (82), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 29/49 (59%)
Query: 25 PDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
P+ K++VG +P ++ L ++F + G V V+ +K TGQS+G F
Sbjct: 108 PEEAKVYVGNLPYDIESEGLAQLFDQAGVVEVAEVIYNKETGQSRGFGF 156
>gi|146299063|ref|YP_001193654.1| RNP-1 like RNA-binding protein [Flavobacterium johnsoniae UW101]
gi|146153481|gb|ABQ04335.1| RNP-1 like RNA-binding protein [Flavobacterium johnsoniae UW101]
Length = 114
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 31/43 (72%)
Query: 28 IKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKG 70
+ +FVG +P S++EADL + F YG V ++ ++ DK TG+SKG
Sbjct: 1 MNIFVGSLPFSIEEADLRESFEAYGTVDSVKIITDKFTGRSKG 43
>gi|413951358|gb|AFW84007.1| hypothetical protein ZEAMMB73_397161 [Zea mays]
Length = 455
Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 21/46 (45%), Positives = 30/46 (65%)
Query: 28 IKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
+K+FVGQ+P+ M EADL +F E V + V++DK T S+G F
Sbjct: 32 VKLFVGQVPKHMAEADLLALFREVAAVDEVTVIKDKATKVSRGCCF 77
Score = 38.1 bits (87), Expect = 0.68, Method: Composition-based stats.
Identities = 22/63 (34%), Positives = 36/63 (57%), Gaps = 9/63 (14%)
Query: 29 KMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAAFLKI-----ARA 83
K+F+G +P+++ + +LT +FS+YG V ++ +LR G AF+K A A
Sbjct: 121 KLFIGMLPKNVTDTELTDLFSKYGNVTDLQILRGSQQTNKAG----CAFIKYQTKDQALA 176
Query: 84 AIE 86
AIE
Sbjct: 177 AIE 179
Score = 34.3 bits (77), Expect = 9.5, Method: Composition-based stats.
Identities = 16/45 (35%), Positives = 24/45 (53%)
Query: 25 PDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSK 69
P +F+ IP+ + +L+ F +GRV + V DK TG SK
Sbjct: 364 PPGANLFIYHIPQEYGDQELSSAFQSFGRVVSAKVFVDKATGVSK 408
>gi|348504910|ref|XP_003440004.1| PREDICTED: ELAV-like protein 1-like isoform 3 [Oreochromis
niloticus]
Length = 369
Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 21/55 (38%), Positives = 34/55 (61%), Gaps = 3/55 (5%)
Query: 22 QPDPDFIK---MFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
+P D IK +++ +PR++ + D+ MFS YGR+ N VL D+ +G S+G F
Sbjct: 142 RPSSDAIKDANLYISGLPRTLSQQDVEDMFSHYGRIINSRVLVDQASGLSRGVAF 196
Score = 34.7 bits (78), Expect = 6.8, Method: Composition-based stats.
Identities = 15/42 (35%), Positives = 25/42 (59%)
Query: 30 MFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGK 71
+ V +P+SM + +L +FS G V + ++RDKV G + K
Sbjct: 59 LIVNYLPQSMSQDELRSLFSSVGEVESAKLIRDKVAGNDETK 100
Score = 34.3 bits (77), Expect = 9.5, Method: Composition-based stats.
Identities = 16/41 (39%), Positives = 25/41 (60%)
Query: 30 MFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKG 70
+F+ + + DEA L +MF +G V N+ V+RD T + KG
Sbjct: 289 IFIYNLGQEADEAMLWQMFGPFGAVLNVKVIRDFNTNKCKG 329
>gi|367017532|ref|XP_003683264.1| hypothetical protein TDEL_0H01940 [Torulaspora delbrueckii]
gi|359750928|emb|CCE94053.1| hypothetical protein TDEL_0H01940 [Torulaspora delbrueckii]
Length = 318
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 33/50 (66%), Gaps = 1/50 (2%)
Query: 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
DP + +FVG++P + E +L + F+E+G + + V+RDK+ QSKG F
Sbjct: 104 DP-YRTIFVGRLPYDISEVELQRKFNEFGEIEKVRVVRDKINNQSKGYAF 152
>gi|115480705|ref|NP_001063946.1| Os09g0565200 [Oryza sativa Japonica Group]
gi|52076131|dbj|BAD46644.1| putative nucleic acid-binding protein [Oryza sativa Japonica Group]
gi|52076138|dbj|BAD46651.1| putative nucleic acid-binding protein [Oryza sativa Japonica Group]
gi|113632179|dbj|BAF25860.1| Os09g0565200 [Oryza sativa Japonica Group]
gi|215697272|dbj|BAG91266.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737486|dbj|BAG96616.1| unnamed protein product [Oryza sativa Japonica Group]
gi|218202645|gb|EEC85072.1| hypothetical protein OsI_32419 [Oryza sativa Indica Group]
gi|222642113|gb|EEE70245.1| hypothetical protein OsJ_30367 [Oryza sativa Japonica Group]
Length = 322
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 36/51 (70%), Gaps = 1/51 (1%)
Query: 20 PEQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKG 70
P Q P F +++VG +P +D++ L ++FSE+G+V + V+ D+ TG+S+G
Sbjct: 230 PRQFGPSF-RIYVGNLPWQVDDSRLVQLFSEHGKVVDARVVYDRETGRSRG 279
>gi|78186885|ref|YP_374928.1| RNA recognition motif-containing protein [Chlorobium luteolum DSM
273]
gi|78166787|gb|ABB23885.1| RNA-binding region RNP-1 (RNA recognition motif) [Chlorobium
luteolum DSM 273]
Length = 90
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
Query: 28 IKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF-EAAFLKIARAAIE 86
+ ++VG +P ++ E DL FSE+G V + N++ DK +G+SKG F E AR AIE
Sbjct: 1 MNIYVGNLPYTISEDDLRDAFSEFGEVASANIITDKFSGRSKGFGFVEMPDDDAAREAIE 60
>gi|149391365|gb|ABR25700.1| chloroplast 28 kDa ribonucleoprotein [Oryza sativa Indica Group]
Length = 186
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 37/54 (68%), Gaps = 1/54 (1%)
Query: 20 PEQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
P Q P F +++VG +P +D++ L ++FSE+G+V + V+ D+ TG+S+G F
Sbjct: 94 PRQFGPSF-RIYVGNLPWQVDDSRLVQLFSEHGKVVDARVVYDRETGRSRGFGF 146
>gi|406896127|gb|EKD40506.1| RNP-1 like protein RNA-binding protein, partial [uncultured
bacterium]
Length = 92
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 32/43 (74%)
Query: 28 IKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKG 70
+K++VG + + E+DL +MF E+G+V + +++ DK +GQSKG
Sbjct: 1 MKLYVGNLSYEISESDLKQMFEEFGKVGSASIIMDKYSGQSKG 43
>gi|360044342|emb|CCD81889.1| putative rna recognition motif containing protein [Schistosoma
mansoni]
Length = 258
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 31/48 (64%)
Query: 26 DFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
D ++VG + + E D+ +FS+YG + NIN++RDK TG SKG F
Sbjct: 35 DSAWIYVGGLHYDLTEGDVICVFSQYGEIVNINLVRDKKTGVSKGFAF 82
>gi|305855162|ref|NP_001182263.1| ELAV-like protein 1 [Sus scrofa]
gi|285818484|gb|ADC38915.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 1 [Sus
scrofa]
gi|456753432|gb|JAA74168.1| ELAV-like 1 (Hu antigen R) [Sus scrofa]
Length = 326
Score = 46.2 bits (108), Expect = 0.003, Method: Composition-based stats.
Identities = 21/55 (38%), Positives = 34/55 (61%), Gaps = 3/55 (5%)
Query: 22 QPDPDFIK---MFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
+P + IK +++ +PR+M + D+ MFS +GR+ N VL D+ TG S+G F
Sbjct: 97 RPSSEVIKDANLYISGLPRTMTQKDVEDMFSPFGRIINSRVLVDQTTGLSRGVAF 151
Score = 35.0 bits (79), Expect = 5.2, Method: Composition-based stats.
Identities = 15/44 (34%), Positives = 26/44 (59%)
Query: 30 MFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
+ V +P++M + +L +FS G + + ++RDKV G S G F
Sbjct: 22 LIVNYLPQNMTQEELRSLFSSIGEIESAKLIRDKVAGHSLGYGF 65
>gi|213401655|ref|XP_002171600.1| RNA-binding domain-containing protein [Schizosaccharomyces
japonicus yFS275]
gi|211999647|gb|EEB05307.1| RNA-binding domain-containing protein [Schizosaccharomyces
japonicus yFS275]
Length = 234
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 47/80 (58%), Gaps = 5/80 (6%)
Query: 3 REKRRECTYEYVRSMSLPEQPD-PDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLR 61
RE R E +S+S D D +++G + +S++E D+ ++FSE+G +I+++R
Sbjct: 5 REIERLNEKELGKSLSASWHQDYKDSAYIYIGNLDKSLNEHDVVRIFSEFGTPVDIHLVR 64
Query: 62 DKVTGQSKGKIFEAAFLKIA 81
DK T +S+G AFLK A
Sbjct: 65 DKETKESRG----FAFLKYA 80
>gi|119589356|gb|EAW68950.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 1 (Hu
antigen R), isoform CRA_b [Homo sapiens]
Length = 445
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 34/55 (61%), Gaps = 3/55 (5%)
Query: 22 QPDPDFIK---MFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
+P + IK +++ +PR+M + D+ MFS +GR+ N VL D+ TG S+G F
Sbjct: 216 RPSSEVIKDANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAF 270
Score = 35.8 bits (81), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 26/45 (57%)
Query: 29 KMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
+ V +P++M + +L +FS G V + ++RDKV G S G F
Sbjct: 140 NLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGF 184
>gi|255636493|gb|ACU18585.1| unknown [Glycine max]
Length = 161
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 30/46 (65%)
Query: 28 IKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
+K+FVGQ+P+ M E ++ MF E+ V +N++RDK + +G F
Sbjct: 16 VKLFVGQVPKRMAEDEVLAMFKEFALVDEVNIIRDKASRAPRGCCF 61
Score = 37.4 bits (85), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 32/51 (62%), Gaps = 5/51 (9%)
Query: 29 KMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAAFLK 79
K+F+G +P+++ E +++ +FS YG + ++ +LR SKG AFLK
Sbjct: 105 KLFIGMLPKNISEDEVSDLFSMYGTIKDLQILRGS-QQTSKG----CAFLK 150
>gi|256087425|ref|XP_002579870.1| rna recognition motif containing protein [Schistosoma mansoni]
Length = 279
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 31/48 (64%)
Query: 26 DFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
D ++VG + + E D+ +FS+YG + NIN++RDK TG SKG F
Sbjct: 56 DSAWIYVGGLHYDLTEGDVICVFSQYGEIVNINLVRDKKTGVSKGFAF 103
>gi|440910206|gb|ELR60031.1| ELAV-like protein 1, partial [Bos grunniens mutus]
Length = 330
Score = 46.2 bits (108), Expect = 0.003, Method: Composition-based stats.
Identities = 21/55 (38%), Positives = 34/55 (61%), Gaps = 3/55 (5%)
Query: 22 QPDPDFIK---MFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
+P + IK +++ +PR+M + D+ MFS +GR+ N VL D+ TG S+G F
Sbjct: 82 RPSSEVIKDANLYISGLPRNMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAF 136
Score = 35.0 bits (79), Expect = 5.2, Method: Composition-based stats.
Identities = 16/44 (36%), Positives = 26/44 (59%)
Query: 30 MFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
+ V +P++M + +L +FS G V + ++RDKV G S G F
Sbjct: 7 LIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGF 50
>gi|397478945|ref|XP_003810794.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 3 [Pan
paniscus]
Length = 578
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 35/51 (68%)
Query: 23 PDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
PD IK+FVG+IPR + E +L +F + G ++++ ++ D ++GQ++G F
Sbjct: 105 PDEAKIKVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAF 155
>gi|309792103|ref|ZP_07686576.1| RNP-1 like RNA-binding protein [Oscillochloris trichoides DG-6]
gi|308225847|gb|EFO79602.1| RNP-1 like RNA-binding protein [Oscillochloris trichoides DG6]
Length = 114
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 32/44 (72%)
Query: 27 FIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKG 70
+K+FVG +P S+ +ADL ++F+ +G V + V+ D+ TG+S+G
Sbjct: 5 LVKLFVGNLPWSVGDADLERIFASHGDVQSARVINDRDTGRSRG 48
>gi|115398724|ref|XP_001214951.1| U2 snRNP component IST3 [Aspergillus terreus NIH2624]
gi|114191834|gb|EAU33534.1| U2 snRNP component IST3 [Aspergillus terreus NIH2624]
Length = 292
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 35/54 (64%), Gaps = 4/54 (7%)
Query: 26 DFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAAFLK 79
D +++G +P + E D+ +FS+YG ++N++RDK TG+S+G AFLK
Sbjct: 31 DTAYIYIGGLPYDLSEGDVVTIFSQYGEPVHVNLVRDKETGKSRG----FAFLK 80
>gi|238499545|ref|XP_002381007.1| RNA recognition motif containing protein, putative [Aspergillus
flavus NRRL3357]
gi|83772685|dbj|BAE62813.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|220692760|gb|EED49106.1| RNA recognition motif containing protein, putative [Aspergillus
flavus NRRL3357]
gi|391869311|gb|EIT78510.1| putative RNA-binding protein [Aspergillus oryzae 3.042]
Length = 291
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 35/54 (64%), Gaps = 4/54 (7%)
Query: 26 DFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAAFLK 79
D +++G +P + E D+ +FS+YG ++N++RDK TG+S+G AFLK
Sbjct: 31 DTAYIYIGGLPFDLSEGDIVTIFSQYGEPVHVNLVRDKETGKSRG----FAFLK 80
>gi|91087869|ref|XP_969491.1| PREDICTED: similar to Zinc finger CCHC-type and RNA-binding
motif-containing protein 1 (U11/U12 small nuclear
ribonucleoprotein 31 kDa protein) (U11/U12 snRNP 31 kDa
protein) [Tribolium castaneum]
gi|270012010|gb|EFA08458.1| hypothetical protein TcasGA2_TC006105 [Tribolium castaneum]
Length = 222
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 25 PDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAAFLKIARA 83
P ++V IP + DL K+F +YG++ + VL+DK T +SKG F FLKI A
Sbjct: 7 PSKSTVYVSNIPYELKNNDLHKLFEKYGKIVKVTVLKDKNTRKSKGVAF-ILFLKIEDA 64
>gi|83643344|ref|YP_431779.1| RNA-binding protein [Hahella chejuensis KCTC 2396]
gi|83631387|gb|ABC27354.1| RNA-binding protein (RRM domain) [Hahella chejuensis KCTC 2396]
Length = 92
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 30/43 (69%)
Query: 28 IKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKG 70
+ ++VG + + E DL + F+ YG + N+N++RD+ TGQSKG
Sbjct: 1 MNIYVGNLSYQVTEDDLREAFAAYGDISNVNIIRDRDTGQSKG 43
>gi|389585865|dbj|GAB68595.1| RNA binding protein, partial [Plasmodium cynomolgi strain B]
Length = 508
Score = 46.2 bits (108), Expect = 0.003, Method: Composition-based stats.
Identities = 22/66 (33%), Positives = 37/66 (56%), Gaps = 5/66 (7%)
Query: 9 CTYEYVRSMSLPEQPDPDF-IKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQ 67
C Y+ M+ P P P IK+FV IP+S+ E D+ +F EYG + ++ ++DK
Sbjct: 69 CNYQ----MNNPYNPAPSIPIKLFVSSIPKSLTENDIKTIFEEYGSIKDVVFIKDKKPNV 124
Query: 68 SKGKIF 73
++ +F
Sbjct: 125 NRANVF 130
Score = 35.0 bits (79), Expect = 5.1, Method: Composition-based stats.
Identities = 17/69 (24%), Positives = 36/69 (52%)
Query: 5 KRRECTYEYVRSMSLPEQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKV 64
K R+ +++ +++ E P +F+ IP + DL FS +G + + ++ +K
Sbjct: 376 KPRKLEQDFINPLNMNEVSGPVGANIFIFHIPNEWIQNDLLAAFSPFGNIISAHIATEKD 435
Query: 65 TGQSKGKIF 73
TG+++G F
Sbjct: 436 TGRNRGFAF 444
>gi|414887732|tpg|DAA63746.1| TPA: hypothetical protein ZEAMMB73_977373 [Zea mays]
Length = 267
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 36/56 (64%), Gaps = 3/56 (5%)
Query: 21 EQPDPDF---IKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
EQ D +F +K+FVG +P S+D A L +F + G V + V+ D++TG+S+G F
Sbjct: 67 EQQDGEFSEDLKLFVGNLPFSVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGF 122
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 29/45 (64%)
Query: 29 KMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
K++VG + +D + L +FSE G+V + V+ D+ +G+S+G F
Sbjct: 184 KVYVGNLAWGVDNSTLENLFSEQGQVLDAKVIYDRDSGRSRGFGF 228
>gi|78185978|ref|YP_374021.1| RNA recognition motif-containing protein [Chlorobium luteolum DSM
273]
gi|78165880|gb|ABB22978.1| RNA-binding region RNP-1 (RNA recognition motif) [Chlorobium
luteolum DSM 273]
Length = 99
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 40/61 (65%), Gaps = 1/61 (1%)
Query: 28 IKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF-EAAFLKIARAAIE 86
+ +++G +P S+ E DL FS++G+V + N++ DK +G+SKG F + + + RAAIE
Sbjct: 10 MNIYIGNLPYSVSEDDLRDAFSQFGQVDSANIIMDKFSGRSKGFGFVDMSSDEAGRAAIE 69
Query: 87 P 87
Sbjct: 70 A 70
>gi|359690077|ref|ZP_09260078.1| glycine rich RNA-binding protein [Leptospira licerasiae serovar
Varillal str. MMD0835]
gi|418749035|ref|ZP_13305327.1| hypothetical protein LEP1GSC178_2892 [Leptospira licerasiae str.
MMD4847]
gi|418758876|ref|ZP_13315057.1| hypothetical protein LEP1GSC185_3275 [Leptospira licerasiae
serovar Varillal str. VAR 010]
gi|384114093|gb|EIE00357.1| hypothetical protein LEP1GSC185_3275 [Leptospira licerasiae
serovar Varillal str. VAR 010]
gi|404276104|gb|EJZ43418.1| hypothetical protein LEP1GSC178_2892 [Leptospira licerasiae str.
MMD4847]
Length = 119
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 32/43 (74%)
Query: 28 IKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKG 70
+K+ VG +P+ E DL K+FS+YG+ +I++ +DK+TG+S G
Sbjct: 1 MKISVGNLPQEWKEEDLEKLFSKYGKAEHISIKKDKLTGRSLG 43
>gi|317150318|ref|XP_001823946.2| U2 snRNP component ist3 [Aspergillus oryzae RIB40]
Length = 221
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 35/54 (64%), Gaps = 4/54 (7%)
Query: 26 DFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAAFLK 79
D +++G +P + E D+ +FS+YG ++N++RDK TG+S+G AFLK
Sbjct: 31 DTAYIYIGGLPFDLSEGDIVTIFSQYGEPVHVNLVRDKETGKSRG----FAFLK 80
>gi|357155243|ref|XP_003577055.1| PREDICTED: flowering time control protein FCA-like [Brachypodium
distachyon]
Length = 749
Score = 45.8 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 17/47 (36%), Positives = 34/47 (72%)
Query: 27 FIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
++K+FVG +PR+ +E D+ +F+++G V + ++RD+ TG+ +G F
Sbjct: 126 YVKLFVGSVPRTANEDDVRPLFADHGDVLEVALIRDRKTGEQQGCCF 172
>gi|121713176|ref|XP_001274199.1| RNA binding domain protein [Aspergillus clavatus NRRL 1]
gi|119402352|gb|EAW12773.1| RNA binding domain protein [Aspergillus clavatus NRRL 1]
Length = 284
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 35/54 (64%), Gaps = 4/54 (7%)
Query: 26 DFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAAFLK 79
D +++G +P + E D+ +FS+YG ++N++RDK TG+S+G AFLK
Sbjct: 31 DTAYIYIGGLPFDISEGDIVTIFSQYGEPVHVNLIRDKETGKSRG----FAFLK 80
>gi|194386914|dbj|BAG59823.1| unnamed protein product [Homo sapiens]
Length = 595
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 35/51 (68%)
Query: 23 PDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
PD IK+FVG+IPR + E +L +F + G ++++ ++ D ++GQ++G F
Sbjct: 122 PDEAKIKVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAF 172
>gi|426221980|ref|XP_004005183.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 2
[Ovis aries]
Length = 595
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 35/51 (68%)
Query: 23 PDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
PD IK+FVG+IPR + E +L +F + G ++++ ++ D ++GQ++G F
Sbjct: 122 PDEAKIKVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAF 172
>gi|326489549|dbj|BAK01755.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 453
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 30/46 (65%)
Query: 28 IKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
+K+FVGQ+P+ M EA+L MF + V + +++DK T S+G F
Sbjct: 31 VKLFVGQVPKHMTEAELAAMFKDVAVVDEVTLIKDKATKASRGCCF 76
Score = 39.3 bits (90), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 36/63 (57%), Gaps = 9/63 (14%)
Query: 29 KMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAAFLKI-----ARA 83
K+F+G +P+++ + +LT +FS+YG + ++ +LR G AF+K A A
Sbjct: 120 KLFIGMLPKNVADTELTDLFSKYGNIKDLQILRGSQQTSKAG----CAFIKYEMKEQAVA 175
Query: 84 AIE 86
AIE
Sbjct: 176 AIE 178
Score = 36.2 bits (82), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 24/45 (53%)
Query: 25 PDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSK 69
P +F+ IP+ + +L+ F +GRV + V DK TG SK
Sbjct: 363 PPGANLFIYHIPQEFGDQELSDAFQRFGRVISAKVFVDKATGSSK 407
>gi|242016767|ref|XP_002428900.1| U1 small nuclear ribonucleoprotein 70 kD, putative [Pediculus
humanus corporis]
gi|212513682|gb|EEB16162.1| U1 small nuclear ribonucleoprotein 70 kD, putative [Pediculus
humanus corporis]
Length = 177
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 36/67 (53%), Gaps = 3/67 (4%)
Query: 7 RECTYEYVRSMSLPEQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTG 66
R EY SL +P+ +FVG++ + E DL +F EYGR+ NV++D VTG
Sbjct: 32 RAINSEYYSDTSLSSKPE---CTVFVGRLHPKVTEDDLKIVFKEYGRIKKCNVIKDIVTG 88
Query: 67 QSKGKIF 73
SK F
Sbjct: 89 GSKQYAF 95
>gi|73950236|ref|XP_866562.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 7
[Canis lupus familiaris]
gi|403287394|ref|XP_003934933.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 2
[Saimiri boliviensis boliviensis]
gi|410966348|ref|XP_003989695.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R [Felis catus]
gi|85681819|gb|ABC73063.1| heterogeneous nuclear ribonucleoprotein-R2 [Homo sapiens]
Length = 595
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 35/51 (68%)
Query: 23 PDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
PD IK+FVG+IPR + E +L +F + G ++++ ++ D ++GQ++G F
Sbjct: 122 PDEAKIKVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAF 172
>gi|395821031|ref|XP_003783853.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 3
[Otolemur garnettii]
Length = 595
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 35/51 (68%)
Query: 23 PDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
PD IK+FVG+IPR + E +L +F + G ++++ ++ D ++GQ++G F
Sbjct: 122 PDEAKIKVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAF 172
>gi|338722115|ref|XP_003364486.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 2
[Equus caballus]
Length = 595
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 35/51 (68%)
Query: 23 PDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
PD IK+FVG+IPR + E +L +F + G ++++ ++ D ++GQ++G F
Sbjct: 122 PDEAKIKVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAF 172
>gi|452822647|gb|EME29664.1| RNA-binding protein [Galdieria sulphuraria]
Length = 187
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 31/44 (70%)
Query: 30 MFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
+FVG +P + E DL +F +YG + +++++RD+ TG+SKG F
Sbjct: 37 IFVGNLPFELTEGDLLVVFEQYGHIADVHLVRDQDTGKSKGFAF 80
>gi|449462184|ref|XP_004148821.1| PREDICTED: flowering time control protein FCA-like [Cucumis
sativus]
gi|449511891|ref|XP_004164081.1| PREDICTED: flowering time control protein FCA-like [Cucumis
sativus]
Length = 675
Score = 45.8 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 23/64 (35%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Query: 11 YEYVRSMSLPEQPD-PDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSK 69
Y + S P+ D +F K+FVG +PR+ E + +F E+G V + +++DK TGQ +
Sbjct: 34 YPFAGRGSSPDHSDGSNFAKLFVGSVPRTATEEIIRPLFEEHGNVIEVALIKDKRTGQQQ 93
Query: 70 GKIF 73
G F
Sbjct: 94 GCCF 97
>gi|168006572|ref|XP_001755983.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162692913|gb|EDQ79268.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 234
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 33/50 (66%)
Query: 26 DFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEA 75
D ++VG + + E D+ +F++YG V ++N++RDK TG+SKG F A
Sbjct: 34 DSAYIYVGGLSFGLTEGDVLAVFAQYGEVVDVNLVRDKATGKSKGFAFLA 83
>gi|221132895|ref|XP_002159009.1| PREDICTED: zinc finger CCHC-type and RNA-binding motif-containing
protein 1-like [Hydra magnipapillata]
Length = 244
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 37/59 (62%), Gaps = 1/59 (1%)
Query: 25 PDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAAFLKIARA 83
P ++VG +P S+ D+ K+F ++GR+ + VLRD+V+ +SKG F F++ A A
Sbjct: 7 PSKSTVYVGNLPFSLTNNDIHKVFEKFGRIAKVTVLRDRVSRESKGVAF-VQFIERASA 64
>gi|83315537|ref|XP_730836.1| ribonucleoprotein [Plasmodium yoelii yoelii 17XNL]
gi|23490683|gb|EAA22401.1| ribonucleoprotein homolog F21B7.26 - Arabidopsis thaliana,
putative [Plasmodium yoelii yoelii]
Length = 440
Score = 45.8 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 11/74 (14%)
Query: 9 CTYEYVRSMSLPEQPDPDF-IKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQ 67
CTY + P P P IK+F+G++P++ +E L +F E+G V + ++RDK+T
Sbjct: 1 CTYFF------PCHPAPPVSIKLFIGRVPKNYEEEQLRPIFEEFGIVNEVVIIRDKITNI 54
Query: 68 SKGKIFEAAFLKIA 81
K +AF+K+A
Sbjct: 55 HK----SSAFVKMA 64
Score = 41.6 bits (96), Expect = 0.062, Method: Composition-based stats.
Identities = 20/56 (35%), Positives = 33/56 (58%), Gaps = 4/56 (7%)
Query: 26 DFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAAFLKIA 81
D K+F+G +P+++ E + MFS YG V + +++D TG KG +F+K A
Sbjct: 112 DQAKLFIGSLPKNITEESIKDMFSVYGSVEEVFIMKDNSTGLGKG----CSFVKFA 163
>gi|77359964|ref|YP_339539.1| hypothetical protein PSHAa1018 [Pseudoalteromonas haloplanktis
TAC125]
gi|76874875|emb|CAI86096.1| conserved protein of unknown function [Pseudoalteromonas
haloplanktis TAC125]
Length = 79
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 30/46 (65%)
Query: 28 IKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
+K+ V + R+ E DL +F+E+G+V N++ DK TGQSKG F
Sbjct: 1 MKLLVRNLSRATSEHDLRTLFAEHGKVTTCNLVLDKETGQSKGFAF 46
>gi|73950238|ref|XP_866575.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 8
[Canis lupus familiaris]
gi|296207006|ref|XP_002750460.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 4
[Callithrix jacchus]
gi|297282471|ref|XP_002802271.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R-like isoform
3 [Macaca mulatta]
gi|332244974|ref|XP_003271638.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 3
[Nomascus leucogenys]
gi|332807933|ref|XP_003307912.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 2
[Pan troglodytes]
gi|402853338|ref|XP_003891353.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 3
[Papio anubis]
gi|426328277|ref|XP_004024926.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 3
[Gorilla gorilla gorilla]
gi|119615446|gb|EAW95040.1| heterogeneous nuclear ribonucleoprotein R, isoform CRA_a [Homo
sapiens]
gi|194390156|dbj|BAG61840.1| unnamed protein product [Homo sapiens]
Length = 494
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 35/51 (68%)
Query: 23 PDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
PD IK+FVG+IPR + E +L +F + G ++++ ++ D ++GQ++G F
Sbjct: 21 PDEAKIKVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAF 71
>gi|242076850|ref|XP_002448361.1| hypothetical protein SORBIDRAFT_06g025810 [Sorghum bicolor]
gi|241939544|gb|EES12689.1| hypothetical protein SORBIDRAFT_06g025810 [Sorghum bicolor]
Length = 727
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 32/50 (64%)
Query: 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
D D +++G +P +MD+ L +FS++G + V++D+ TGQSKG F
Sbjct: 425 DYDETNLYIGYLPPTMDDPGLISLFSQFGDIVMAKVIKDRNTGQSKGYGF 474
>gi|255556436|ref|XP_002519252.1| Flowering time control protein FCA, putative [Ricinus communis]
gi|223541567|gb|EEF43116.1| Flowering time control protein FCA, putative [Ricinus communis]
Length = 811
Score = 45.8 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 19/47 (40%), Positives = 31/47 (65%)
Query: 27 FIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
F K+FVG +PR+ E D+ +F ++G V + +++DK TGQ +G F
Sbjct: 160 FAKLFVGSVPRTASEEDIRPLFEQHGNVIEVALIKDKRTGQQQGCCF 206
>gi|395513446|ref|XP_003760935.1| PREDICTED: ELAV-like protein 1 [Sarcophilus harrisii]
Length = 374
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 34/55 (61%), Gaps = 3/55 (5%)
Query: 22 QPDPDFIK---MFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
+P + IK +++ +PR+M + D+ MFS +GR+ N VL D+ TG S+G F
Sbjct: 145 RPSSEVIKDANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAF 199
Score = 35.4 bits (80), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 26/45 (57%)
Query: 29 KMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
+ V +P++M + +L +FS G V + ++RDKV G S G F
Sbjct: 69 NLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGF 113
>gi|242025632|ref|XP_002433228.1| U2 snRNP component IST3, putative [Pediculus humanus corporis]
gi|212518769|gb|EEB20490.1| U2 snRNP component IST3, putative [Pediculus humanus corporis]
Length = 121
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 32/48 (66%)
Query: 26 DFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
D +FVG +P + E D+ +FS++G NIN++RDK +G+S+G F
Sbjct: 32 DSAWVFVGGLPYDLTEGDIICVFSQFGEPVNINLVRDKDSGKSRGFCF 79
>gi|410928273|ref|XP_003977525.1| PREDICTED: ELAV-like protein 1-like isoform 3 [Takifugu rubripes]
Length = 368
Score = 45.8 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 21/55 (38%), Positives = 33/55 (60%), Gaps = 3/55 (5%)
Query: 22 QPDPDFIK---MFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
+P + IK +++ +PR+ + DL MFS YGR+ N VL D+ +G S+G F
Sbjct: 142 RPSSEMIKDANLYISGLPRTASQQDLEDMFSHYGRIINSRVLVDQASGVSRGVAF 196
Score = 34.7 bits (78), Expect = 8.3, Method: Composition-based stats.
Identities = 14/40 (35%), Positives = 25/40 (62%)
Query: 30 MFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSK 69
+ V +P+SM + +L +FS G V + ++RDKV G ++
Sbjct: 57 LIVNYLPQSMSQEELRSLFSSVGDVESAKLIRDKVAGNTQ 96
>gi|321464387|gb|EFX75395.1| sex-lethal protein variant 2 [Daphnia pulex]
Length = 297
Score = 45.8 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 20/58 (34%), Positives = 34/58 (58%)
Query: 16 SMSLPEQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
S + P D ++V +PR + E +LT +FS +G + +N+L+DK+TG +G F
Sbjct: 101 SYARPPGEDRKETNLYVTNLPRDVTEDELTNIFSAHGNIVQMNLLKDKITGMPRGVAF 158
Score = 34.7 bits (78), Expect = 7.7, Method: Composition-based stats.
Identities = 16/47 (34%), Positives = 26/47 (55%)
Query: 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKG 70
D + + +P+++ E++L KMF G V N ++RD TG S G
Sbjct: 23 DSSRTNLIINYLPQNLTESELFKMFVTIGTVTNCKIMRDFRTGYSYG 69
>gi|237838769|ref|XP_002368682.1| RNA binding motif-containing protein [Toxoplasma gondii ME49]
gi|211966346|gb|EEB01542.1| RNA binding motif-containing protein [Toxoplasma gondii ME49]
gi|221481488|gb|EEE19874.1| RNA binding motif-containing protein, putative [Toxoplasma gondii
GT1]
gi|221505448|gb|EEE31093.1| hypothetical protein TGVEG_080800 [Toxoplasma gondii VEG]
Length = 492
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 32/45 (71%)
Query: 29 KMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
K+FVG + S+ E+D+ K FS++G V ++++RD TG+S+G F
Sbjct: 194 KIFVGGVNPSLSESDVEKCFSKFGTVDKVSIIRDAATGKSRGFGF 238
Score = 36.2 bits (82), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 38/82 (46%), Gaps = 1/82 (1%)
Query: 4 EKRRECTYEYVRSMSLPEQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDK 63
E+ E + PE PD +K FVG I E + F +G+V + + DK
Sbjct: 86 EENEETKEDGTNGAGKPEDPDA-ALKFFVGGIIPQATELQIRSYFERFGKVKAVELKMDK 144
Query: 64 VTGQSKGKIFEAAFLKIARAAI 85
+TG+++G F + A+ AI
Sbjct: 145 MTGRNRGFCFVTMGSEEAKEAI 166
>gi|225470686|ref|XP_002263312.1| PREDICTED: uncharacterized protein LOC100261746 [Vitis vinifera]
Length = 751
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 36/56 (64%), Gaps = 1/56 (1%)
Query: 30 MFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAAFLKIARAAI 85
++VG +P++MDE L ++F+ +G++ V++D+ TG SKG F F A AA+
Sbjct: 515 LYVGYLPQTMDENCLAELFAPFGKIAKTKVIKDRATGISKGYGF-VKFENPAHAAL 569
>gi|1655901|gb|AAB17967.1| elav G homolog [Mus musculus]
Length = 326
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 34/55 (61%), Gaps = 3/55 (5%)
Query: 22 QPDPDFIK---MFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
+P + IK +++ +PR+M + D+ MFS +GR+ N VL D+ TG S+G F
Sbjct: 97 RPSSEVIKDANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAF 151
Score = 35.8 bits (81), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 26/45 (57%)
Query: 29 KMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
+ V +P++M + +L +FS G V + ++RDKV G S G F
Sbjct: 21 NLIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGF 65
>gi|343960931|dbj|BAK62055.1| heterogeneous nuclear ribonucleoprotein R [Pan troglodytes]
Length = 497
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 35/51 (68%)
Query: 23 PDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
PD IK+FVG+IPR + E +L +F + G ++++ ++ D ++GQ++G F
Sbjct: 21 PDEAKIKVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAF 71
>gi|384247531|gb|EIE21017.1| RNA-binding domain-containing protein, partial [Coccomyxa
subellipsoidea C-169]
Length = 344
Score = 45.8 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 27/66 (40%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
Query: 20 PEQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAAFLK 79
P +P K+FVGQ+PR + E L +F YG + +IN+LR GQS G F F K
Sbjct: 103 PAEPGIAPRKLFVGQVPRDVTEDTLRPLFEPYGDIEHINILRTH-RGQSAGCAF-VQFQK 160
Query: 80 IARAAI 85
A+A +
Sbjct: 161 WAQAEV 166
Score = 36.2 bits (82), Expect = 2.9, Method: Composition-based stats.
Identities = 16/45 (35%), Positives = 28/45 (62%), Gaps = 3/45 (6%)
Query: 17 MSLPEQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLR 61
M P +P ++FVGQ+P + E DL +F+ +G V N+++L+
Sbjct: 5 MGEPVASEP---RLFVGQVPSDVREEDLWPLFTPFGTVRNLHMLK 46
>gi|294878540|ref|XP_002768400.1| Ser/Arg-rich splicing factor, putative [Perkinsus marinus ATCC
50983]
gi|239870803|gb|EER01118.1| Ser/Arg-rich splicing factor, putative [Perkinsus marinus ATCC
50983]
Length = 414
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 38/67 (56%), Gaps = 2/67 (2%)
Query: 18 SLPEQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAAF 77
+LP + D K+F+G +P D LT+M S+YG V + NV+ D+ TG+++G F A
Sbjct: 180 TLPYRVPDDPKKVFIGGLPPCADNNSLTRMLSQYGSVVSCNVMFDRGTGRNRG--FGYAT 237
Query: 78 LKIARAA 84
R A
Sbjct: 238 FSTPREA 244
Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 39/69 (56%), Gaps = 4/69 (5%)
Query: 2 GREKRRECTYEYVRSMSLPEQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLR 61
G R E + + LP+ P K+F+G +P+S D++ +T+ S+YG V + V+
Sbjct: 300 GEGYRAEQQWRQKEKLLLPDDP----CKVFLGGLPQSADQSRVTEHLSQYGHVQEVTVMY 355
Query: 62 DKVTGQSKG 70
D+ TG+ +G
Sbjct: 356 DRETGRHRG 364
Score = 40.4 bits (93), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 31/45 (68%)
Query: 29 KMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
K+F+G +P + D+ +L FS++G + + V+ D+VTG+S+G F
Sbjct: 44 KLFLGGLPSNCDKQELKDYFSQFGEIEDSIVMMDRVTGRSRGFGF 88
>gi|26344670|dbj|BAC35984.1| unnamed protein product [Mus musculus]
Length = 326
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 34/55 (61%), Gaps = 3/55 (5%)
Query: 22 QPDPDFIK---MFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
+P + IK +++ +PR+M + D+ MFS +GR+ N VL D+ TG S+G F
Sbjct: 97 RPSSEVIKDANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAF 151
Score = 35.8 bits (81), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 26/45 (57%)
Query: 29 KMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
+ V +P++M + +L +FS G V + ++RDKV G S G F
Sbjct: 21 NLIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGF 65
>gi|26330019|dbj|BAC28748.1| unnamed protein product [Mus musculus]
Length = 326
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 34/55 (61%), Gaps = 3/55 (5%)
Query: 22 QPDPDFIK---MFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
+P + IK +++ +PR+M + D+ MFS +GR+ N VL D+ TG S+G F
Sbjct: 97 RPSSEVIKDANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAF 151
Score = 35.8 bits (81), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 26/45 (57%)
Query: 29 KMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
+ V +P++M + +L +FS G V + ++RDKV G S G F
Sbjct: 21 NLIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGF 65
>gi|355685803|gb|AER97853.1| ELAV-like protein 1 [Mustela putorius furo]
Length = 343
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 34/55 (61%), Gaps = 3/55 (5%)
Query: 22 QPDPDFIK---MFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
+P + IK +++ +PR+M + D+ MFS +GR+ N VL D+ TG S+G F
Sbjct: 115 RPSSEVIKDANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAF 169
Score = 35.4 bits (80), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 26/45 (57%)
Query: 29 KMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
+ V +P++M + +L +FS G V + ++RDKV G S G F
Sbjct: 39 NLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGF 83
>gi|302340505|ref|YP_003805711.1| RNP-1 like RNA-binding protein [Spirochaeta smaragdinae DSM
11293]
gi|301637690|gb|ADK83117.1| RNP-1 like RNA-binding protein [Spirochaeta smaragdinae DSM
11293]
Length = 88
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 29 KMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF-EAAFLKIARAAI 85
K++VG + S E L +F +YG+V ++N++ D+ TGQSKG F E + A AAI
Sbjct: 4 KIYVGNLNYSTREESLQDLFGQYGQVNSVNIITDRYTGQSKGFGFVEMEEMDAAEAAI 61
>gi|31542602|ref|NP_034615.2| ELAV-like protein 1 [Mus musculus]
gi|157818153|ref|NP_001102318.1| ELAV-like protein 1 [Rattus norvegicus]
gi|354488231|ref|XP_003506274.1| PREDICTED: ELAV-like protein 1 [Cricetulus griseus]
gi|341940489|sp|P70372.2|ELAV1_MOUSE RecName: Full=ELAV-like protein 1; AltName: Full=Elav-like generic
protein; AltName: Full=Hu-antigen R; Short=HuR; AltName:
Full=MelG
gi|26348505|dbj|BAC37892.1| unnamed protein product [Mus musculus]
gi|83308037|emb|CAI77902.1| HuR RNA binding protein [Spalax judaei]
gi|148690049|gb|EDL21996.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 1 (Hu
antigen R), isoform CRA_a [Mus musculus]
gi|148690050|gb|EDL21997.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 1 (Hu
antigen R), isoform CRA_a [Mus musculus]
gi|149015619|gb|EDL75000.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 1 (Hu
antigen R) (predicted), isoform CRA_a [Rattus
norvegicus]
gi|149015620|gb|EDL75001.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 1 (Hu
antigen R) (predicted), isoform CRA_a [Rattus
norvegicus]
gi|197245826|gb|AAI68972.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 1 (Hu
antigen R) [Rattus norvegicus]
gi|208609536|dbj|BAG72208.1| HuR [Rattus norvegicus]
Length = 326
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 34/55 (61%), Gaps = 3/55 (5%)
Query: 22 QPDPDFIK---MFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
+P + IK +++ +PR+M + D+ MFS +GR+ N VL D+ TG S+G F
Sbjct: 97 RPSSEVIKDANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAF 151
Score = 35.4 bits (80), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 26/45 (57%)
Query: 29 KMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
+ V +P++M + +L +FS G V + ++RDKV G S G F
Sbjct: 21 NLIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGF 65
>gi|363751975|ref|XP_003646204.1| hypothetical protein Ecym_4324 [Eremothecium cymbalariae
DBVPG#7215]
gi|356889839|gb|AET39387.1| hypothetical protein Ecym_4324 [Eremothecium cymbalariae
DBVPG#7215]
Length = 331
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 47/92 (51%), Gaps = 21/92 (22%)
Query: 2 GREKRRECTYEYVRSMS--------------LPEQ------PDPDFIKMFVGQIPRSMDE 41
G E R YE VRS++ +PE+ DP F +FVG++P +DE
Sbjct: 62 GSENRHLDKYEEVRSLTARNERLLEAEQAKWVPEEDSNINDTDP-FRTIFVGRLPYEVDE 120
Query: 42 ADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
+L K F ++G + + ++RDK+T + KG F
Sbjct: 121 LELQKQFIKFGDIERVRIVRDKLTNEPKGYAF 152
>gi|356524599|ref|XP_003530916.1| PREDICTED: uncharacterized protein LOC100807978 [Glycine max]
Length = 358
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 33/50 (66%), Gaps = 1/50 (2%)
Query: 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
DP + +FV ++ R +E +L K+ S+YGRV N ++RD VTG S+G F
Sbjct: 60 DP-YCTLFVARLSRLTNEDNLRKVMSKYGRVKNFRLVRDIVTGASRGYAF 108
>gi|254580049|ref|XP_002496010.1| ZYRO0C08382p [Zygosaccharomyces rouxii]
gi|238938901|emb|CAR27077.1| ZYRO0C08382p [Zygosaccharomyces rouxii]
Length = 304
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 33/50 (66%), Gaps = 1/50 (2%)
Query: 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
DP F +FVG++P E +L + FS++G + I V+RDKVT +SKG F
Sbjct: 104 DP-FKTIFVGRLPYDTTEMELQREFSKFGDIERIRVVRDKVTNKSKGYAF 152
>gi|428174818|gb|EKX43711.1| hypothetical protein GUITHDRAFT_163728 [Guillardia theta CCMP2712]
Length = 501
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 43/79 (54%), Gaps = 10/79 (12%)
Query: 2 GREKRRECTYEYVRSM--SLPEQP--------DPDFIKMFVGQIPRSMDEADLTKMFSEY 51
G ++R + TY Y + + LP + D D +FV Q+ R DE DL + FSE
Sbjct: 118 GEKRRYDETYRYEKEIPDRLPAEQIAKDDEGFDRDMRTIFVAQVARKADERDLFQFFSEA 177
Query: 52 GRVYNINVLRDKVTGQSKG 70
G+V ++ +++D T +SKG
Sbjct: 178 GKVVDVRIIKDTQTRRSKG 196
>gi|432936678|ref|XP_004082225.1| PREDICTED: ELAV-like protein 1-like [Oryzias latipes]
Length = 342
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 34/55 (61%), Gaps = 3/55 (5%)
Query: 22 QPDPDFIK---MFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
+P D IK +++ +P++M + D+ MFS YGR+ N VL D+ TG S+G F
Sbjct: 113 RPSSDTIKDANLYISGLPKNMTQKDVEDMFSCYGRIINSRVLVDQSTGMSRGVAF 167
Score = 38.5 bits (88), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 33/66 (50%)
Query: 8 ECTYEYVRSMSLPEQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQ 67
E + Y M ++P + V +P+SM + +L +FS G V + ++RDKV G
Sbjct: 16 EMSNGYEDHMVGGDEPKDAKTNLIVNYLPQSMSQDELRSLFSSIGEVESAKLIRDKVAGH 75
Query: 68 SKGKIF 73
S G F
Sbjct: 76 SLGYGF 81
>gi|156972604|ref|YP_001443511.1| RNA binding protein [Vibrio harveyi ATCC BAA-1116]
gi|156524198|gb|ABU69284.1| hypothetical protein VIBHAR_00255 [Vibrio harveyi ATCC BAA-1116]
Length = 226
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 32/47 (68%)
Query: 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKG 70
DP ++VG +P +E+ + +F+EYG+VY + +++DK TG+ +G
Sbjct: 133 DPSTKTLYVGNLPYKANESHVRDLFAEYGQVYAVRLMKDKRTGKRRG 179
>gi|13357170|gb|AAK20026.1|AF234184_1 sex-lethal protein SXL2 [Lucilia cuprina]
Length = 325
Score = 45.8 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 24/74 (32%), Positives = 42/74 (56%), Gaps = 12/74 (16%)
Query: 3 REKRRECTYEYVRSMSLPEQPDPDFIK---MFVGQIPRSMDEADLTKMFSEYGRVYNINV 59
R KR + +Y +P + IK ++V +PR++ + +L K+F +YG + N+
Sbjct: 169 RNKRLKVSYA---------RPGGESIKDTNLYVTNLPRTITDDELEKIFGKYGNIVQKNI 219
Query: 60 LRDKVTGQSKGKIF 73
LRDK+TG+ +G F
Sbjct: 220 LRDKLTGKPRGVAF 233
>gi|293332827|ref|NP_001169335.1| uncharacterized protein LOC100383202 [Zea mays]
gi|224028769|gb|ACN33460.1| unknown [Zea mays]
gi|413918115|gb|AFW58047.1| hypothetical protein ZEAMMB73_457780 [Zea mays]
Length = 714
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 32/50 (64%)
Query: 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
D D +++G +P +MD+ L +FS++G + V++D+ TGQSKG F
Sbjct: 416 DYDETNLYIGYLPPTMDDDGLVSLFSQFGDIVMAKVIKDRNTGQSKGYGF 465
>gi|413948822|gb|AFW81471.1| hypothetical protein ZEAMMB73_420516 [Zea mays]
Length = 486
Score = 45.8 bits (107), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 29/46 (63%)
Query: 28 IKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
+K+FVGQ+P+ M EA+L MF V + V+RD+ T S+G F
Sbjct: 34 VKLFVGQVPKQMSEAELVAMFRGVALVDEVTVIRDRATRVSRGCCF 79
Score = 39.7 bits (91), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 36/63 (57%), Gaps = 9/63 (14%)
Query: 29 KMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAAFLKI-----ARA 83
K+FVG +P+++ +A++ +FS+YG + ++ +LR G AFLK A A
Sbjct: 123 KLFVGMLPKNVTDAEMIDLFSKYGNIKDLQILRGSQQTSKAG----CAFLKYETKEQAVA 178
Query: 84 AIE 86
AIE
Sbjct: 179 AIE 181
Score = 37.7 bits (86), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 23/45 (51%)
Query: 25 PDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSK 69
P +F+ IP+ + DL F +GRV + V DK TG SK
Sbjct: 397 PPGANLFIYHIPQEFGDHDLANAFHSFGRVLSAKVFVDKATGVSK 441
>gi|297827229|ref|XP_002881497.1| hypothetical protein ARALYDRAFT_482714 [Arabidopsis lyrata subsp.
lyrata]
gi|297327336|gb|EFH57756.1| hypothetical protein ARALYDRAFT_482714 [Arabidopsis lyrata subsp.
lyrata]
Length = 289
Score = 45.8 bits (107), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 31/46 (67%)
Query: 28 IKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
+K+FVG +P ++D A L ++F G V + V+ DKVTG+S+G F
Sbjct: 91 LKLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGF 136
Score = 34.3 bits (77), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 28/45 (62%)
Query: 29 KMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
+++VG + +D+ L +F+E G+V V+ D+ +G+SKG F
Sbjct: 205 RVYVGNLSWGVDDMALESLFAEQGKVVEARVIYDRDSGRSKGFGF 249
>gi|383142223|gb|AFG52471.1| Pinus taeda anonymous locus CL931Contig1_02 genomic sequence
Length = 85
Score = 45.8 bits (107), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 34/51 (66%), Gaps = 1/51 (1%)
Query: 23 PDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
P D IK+FVG +P S+D A+L ++F + G V + V+ D+ TG+S+G F
Sbjct: 13 PSAD-IKVFVGNLPWSVDSAELAELFKDAGDVTMVEVIYDRQTGRSRGFAF 62
>gi|289742401|gb|ADD19948.1| RNA-binding protein musashi [Glossina morsitans morsitans]
Length = 469
Score = 45.8 bits (107), Expect = 0.004, Method: Composition-based stats.
Identities = 26/69 (37%), Positives = 41/69 (59%), Gaps = 5/69 (7%)
Query: 10 TYEYVRSMSLPEQPDPD-----FIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKV 64
T E R++ PE+ + K+FVG + + DE+ LT+ FSE+G+V +I +L DK
Sbjct: 106 TVEAKRALPRPEREASENKNFSVKKLFVGGLKDNHDESCLTEYFSEFGKVVSIKILTDKT 165
Query: 65 TGQSKGKIF 73
TG+ +G F
Sbjct: 166 TGKRRGFAF 174
>gi|21672973|ref|NP_661038.1| RNA-binding protein [Chlorobium tepidum TLS]
gi|21646033|gb|AAM71380.1| RNA-binding protein [Chlorobium tepidum TLS]
Length = 90
Score = 45.8 bits (107), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 32/43 (74%)
Query: 28 IKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKG 70
+ +++G +P S+ + DL FSE+G+V++ N++ DK +G+SKG
Sbjct: 1 MNIYIGNLPYSVTDEDLRDKFSEFGQVHSANIITDKFSGRSKG 43
>gi|307180443|gb|EFN68469.1| Zinc finger CCHC-type and RNA-binding motif-containing protein 1
[Camponotus floridanus]
Length = 232
Score = 45.8 bits (107), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Query: 25 PDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAAFLKIARAA 84
P ++V +P S+ D+ ++ S YG++ + +L+DKVT +S+G F FLK+ A
Sbjct: 7 PSKSTVYVSNLPFSLTNNDVHQLLSNYGKIVKVTILKDKVTRRSRGVAF-VLFLKVEDAV 65
Query: 85 I 85
+
Sbjct: 66 V 66
>gi|58271546|ref|XP_572929.1| hypothetical protein [Cryptococcus neoformans var. neoformans
JEC21]
gi|134115110|ref|XP_773853.1| hypothetical protein CNBH3050 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50256481|gb|EAL19206.1| hypothetical protein CNBH3050 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57229188|gb|AAW45622.1| conserved hypothetical protein [Cryptococcus neoformans var.
neoformans JEC21]
Length = 373
Score = 45.8 bits (107), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 32/45 (71%)
Query: 26 DFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKG 70
D ++VG +P + E DL +FS++G + ++N++RDK TG+S+G
Sbjct: 29 DSAYIYVGGLPFELTEGDLITIFSQWGEIMDVNLVRDKETGKSRG 73
>gi|357160118|ref|XP_003578663.1| PREDICTED: 31 kDa ribonucleoprotein, chloroplastic-like
[Brachypodium distachyon]
Length = 296
Score = 45.8 bits (107), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 37/54 (68%), Gaps = 4/54 (7%)
Query: 21 EQPDPDF----IKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKG 70
E+P DF +++VG +P +D++ L ++FSE+G+V + V+ D+ TG+S+G
Sbjct: 201 ERPARDFGGSSFRIYVGNLPWQVDDSRLVQLFSEHGKVVDARVVYDRETGRSRG 254
>gi|70939105|ref|XP_740139.1| RNA binding protein [Plasmodium chabaudi chabaudi]
gi|56517645|emb|CAH76403.1| RNA binding protein, putative [Plasmodium chabaudi chabaudi]
Length = 248
Score = 45.8 bits (107), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 46/81 (56%), Gaps = 6/81 (7%)
Query: 2 GREKRRECTYEYVRSMSLPEQPDPDF-IKMFVGQIPRSMDEADLTKMFSEYGRVYNINVL 60
G+ + + +Y + P P P IK+F+G++P++ +E L +F E+G V + ++
Sbjct: 59 GKSDKDDINMDY-SDHTFPCHPAPPVSIKLFIGRVPKNYEEEQLRPIFEEFGIVNEVVII 117
Query: 61 RDKVTGQSKGKIFEAAFLKIA 81
RDK+T K +AF+K+A
Sbjct: 118 RDKITNIHK----SSAFVKMA 134
Score = 42.7 bits (99), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 33/56 (58%), Gaps = 4/56 (7%)
Query: 26 DFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAAFLKIA 81
D K+F+G +P+++ E + MFS YG V + +++D TG KG +F+K A
Sbjct: 182 DQAKLFIGSLPKNITEESIKDMFSVYGSVEEVFIMKDNSTGLGKG----CSFVKFA 233
>gi|398347575|ref|ZP_10532278.1| RNA binding protein [Leptospira broomii str. 5399]
Length = 120
Score = 45.8 bits (107), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 31/43 (72%)
Query: 28 IKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKG 70
+K+ VG +P+ E DL K+FS+YG V ++ + +DK+TG+S G
Sbjct: 1 MKISVGNLPQEWSEEDLKKLFSQYGEVQHVLIKKDKLTGRSLG 43
>gi|410928269|ref|XP_003977523.1| PREDICTED: ELAV-like protein 1-like isoform 1 [Takifugu rubripes]
Length = 334
Score = 45.4 bits (106), Expect = 0.004, Method: Composition-based stats.
Identities = 21/55 (38%), Positives = 33/55 (60%), Gaps = 3/55 (5%)
Query: 22 QPDPDFIK---MFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
+P + IK +++ +PR+ + DL MFS YGR+ N VL D+ +G S+G F
Sbjct: 108 RPSSEMIKDANLYISGLPRTASQQDLEDMFSHYGRIINSRVLVDQASGVSRGVAF 162
Score = 36.6 bits (83), Expect = 2.0, Method: Composition-based stats.
Identities = 17/44 (38%), Positives = 26/44 (59%)
Query: 30 MFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
+ V +P+SM + +L +FS G V + ++RDKV G S G F
Sbjct: 33 LIVNYLPQSMSQEELRSLFSSVGDVESAKLIRDKVAGHSLGYGF 76
>gi|410928271|ref|XP_003977524.1| PREDICTED: ELAV-like protein 1-like isoform 2 [Takifugu rubripes]
Length = 358
Score = 45.4 bits (106), Expect = 0.004, Method: Composition-based stats.
Identities = 21/55 (38%), Positives = 33/55 (60%), Gaps = 3/55 (5%)
Query: 22 QPDPDFIK---MFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
+P + IK +++ +PR+ + DL MFS YGR+ N VL D+ +G S+G F
Sbjct: 132 RPSSEMIKDANLYISGLPRTASQQDLEDMFSHYGRIINSRVLVDQASGVSRGVAF 186
Score = 36.6 bits (83), Expect = 2.1, Method: Composition-based stats.
Identities = 17/44 (38%), Positives = 26/44 (59%)
Query: 30 MFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
+ V +P+SM + +L +FS G V + ++RDKV G S G F
Sbjct: 57 LIVNYLPQSMSQEELRSLFSSVGDVESAKLIRDKVAGHSLGYGF 100
>gi|323498758|ref|ZP_08103745.1| RNA-binding protein [Vibrio sinaloensis DSM 21326]
gi|323316186|gb|EGA69210.1| RNA-binding protein [Vibrio sinaloensis DSM 21326]
Length = 149
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 40/65 (61%), Gaps = 3/65 (4%)
Query: 9 CTYEYVRSMSLP---EQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVT 65
C + + S + P Q DP ++VG +P +E+++ ++FS++G V+ + +++DK T
Sbjct: 39 CAFVFKFSNTTPIDAPQNDPSTNTLYVGNLPYKANESNVKELFSKHGEVFAVRLMKDKRT 98
Query: 66 GQSKG 70
G+ +G
Sbjct: 99 GKRRG 103
>gi|256828609|ref|YP_003157337.1| RNP-1 like RNA-binding protein [Desulfomicrobium baculatum DSM
4028]
gi|256577785|gb|ACU88921.1| RNP-1 like RNA-binding protein [Desulfomicrobium baculatum DSM
4028]
Length = 85
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 37/59 (62%)
Query: 28 IKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAAFLKIARAAIE 86
+ ++VG + S +ADL +FS+YG V + +V+ D+ TG+S+G F + AR AI+
Sbjct: 1 MNIYVGNLSWSTTDADLKSLFSQYGEVTSAHVIEDRATGRSRGFGFVEMDDEGARKAIQ 59
>gi|398342031|ref|ZP_10526734.1| RNA binding protein [Leptospira inadai serovar Lyme str. 10]
Length = 120
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 31/43 (72%)
Query: 28 IKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKG 70
+K+ VG +P+ E DL K+FS+YG V ++ + +DK+TG+S G
Sbjct: 1 MKISVGNLPQEWSEEDLKKLFSQYGEVQHVLIKKDKLTGRSLG 43
>gi|99029149|gb|ABF60862.1| GRSF [Lilium longiflorum]
Length = 207
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 40/56 (71%), Gaps = 4/56 (7%)
Query: 18 SLPEQP---DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKG 70
S PE+P DP ++++VG +P +D++ L ++FSE+G+V + V+ D+ +G+S+G
Sbjct: 110 SRPERPRESDPS-LRVYVGNLPWQVDDSRLEQLFSEHGKVIDARVVYDRQSGRSRG 164
>gi|47210814|emb|CAF92867.1| unnamed protein product [Tetraodon nigroviridis]
Length = 447
Score = 45.4 bits (106), Expect = 0.004, Method: Composition-based stats.
Identities = 21/55 (38%), Positives = 33/55 (60%), Gaps = 3/55 (5%)
Query: 22 QPDPDFIK---MFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
+P + IK +++ +PR+ + DL MFS YGR+ N VL D+ +G S+G F
Sbjct: 215 RPSSEMIKDANLYISGLPRTASQQDLEDMFSHYGRIINSRVLVDQASGVSRGVAF 269
Score = 34.3 bits (77), Expect = 9.6, Method: Composition-based stats.
Identities = 14/40 (35%), Positives = 25/40 (62%)
Query: 30 MFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSK 69
+ V +P+SM + +L +FS G V + ++RDKV G ++
Sbjct: 57 LIVNYLPQSMSQEELRSLFSSVGDVESAKLIRDKVAGNTQ 96
>gi|261333366|emb|CBH16361.1| RBP7 [Trypanosoma brucei gambiense DAL972]
Length = 116
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 30/45 (66%)
Query: 29 KMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
++FVGQ+ + E D+ +F YG V ++N+LRDK T +SKG F
Sbjct: 6 RLFVGQLNFNATEDDIYALFDFYGDVLHVNILRDKETQKSKGSAF 50
>gi|412993650|emb|CCO14161.1| predicted protein [Bathycoccus prasinos]
Length = 499
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 30/49 (61%)
Query: 25 PDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
P ++V IPR M+E L +F E G V ++N++RDK++ SKG F
Sbjct: 283 PTHSNLYVWNIPRDMEEGSLKHLFEECGEVESVNIMRDKMSQVSKGYGF 331
Score = 43.5 bits (101), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 29/49 (59%)
Query: 25 PDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
P ++V IPR MDE L+ +F ++G V + ++RD T QSKG F
Sbjct: 93 PKHSNLYVWSIPRDMDERQLSTLFQKFGTVESCTIMRDVQTKQSKGYGF 141
>gi|351730017|ref|ZP_08947708.1| RNP-1 like RNA-binding protein [Acidovorax radicis N35]
Length = 115
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 39/60 (65%), Gaps = 1/60 (1%)
Query: 29 KMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF-EAAFLKIARAAIEP 87
K++VG +P S+ ++ L FSE+G V + V+ D+ TG+SKG F E A ++A+AAI
Sbjct: 4 KIYVGNLPYSVTDSVLESNFSEFGNVTSAKVMMDRETGRSKGFGFVEMASAEVAQAAISA 63
>gi|307108981|gb|EFN57220.1| hypothetical protein CHLNCDRAFT_14185, partial [Chlorella
variabilis]
Length = 116
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 32/46 (69%)
Query: 30 MFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEA 75
+F G +P + E DL +F++YG V +++++RDK TG+S+G F A
Sbjct: 38 VFSGGLPFELTEGDLLAVFAQYGEVVDVHLVRDKKTGKSRGFAFLA 83
>gi|301773128|ref|XP_002921958.1| PREDICTED: ELAV-like protein 1-like isoform 2 [Ailuropoda
melanoleuca]
Length = 325
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 34/55 (61%), Gaps = 3/55 (5%)
Query: 22 QPDPDFIK---MFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
+P + IK +++ +PR+M + D+ MFS +GR+ N VL D+ TG S+G F
Sbjct: 97 RPSSEVIKDANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAF 151
Score = 35.4 bits (80), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 26/45 (57%)
Query: 29 KMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
+ V +P++M + +L +FS G V + ++RDKV G S G F
Sbjct: 21 NLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGF 65
>gi|300175605|emb|CBK20916.2| unnamed protein product [Blastocystis hominis]
Length = 247
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 29/45 (64%)
Query: 29 KMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
K+F+GQIP+S E D+ +F + V+ +++RDK T + KG F
Sbjct: 28 KLFIGQIPKSFTEQDVIHIFEDTCPVFQAHIIRDKQTNEHKGCAF 72
>gi|221057576|ref|XP_002261296.1| RNA binding protein [Plasmodium knowlesi strain H]
gi|194247301|emb|CAQ40701.1| RNA binding protein, putative [Plasmodium knowlesi strain H]
Length = 512
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 40/64 (62%), Gaps = 5/64 (7%)
Query: 19 LPEQPDPDF-IKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAAF 77
P P P IK+F+G++P++M+E + +F E+G V + ++RDK+T K +AF
Sbjct: 77 FPCHPAPPVSIKLFIGRVPKNMEEEQVRPIFEEFGIVKEVVIIRDKITNIHKS----SAF 132
Query: 78 LKIA 81
+K+A
Sbjct: 133 VKMA 136
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 34/56 (60%), Gaps = 4/56 (7%)
Query: 26 DFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAAFLKIA 81
D K+F+G +P+S+ E + +MFS YG V + +++D TG KG +F+K A
Sbjct: 184 DQAKLFIGSLPKSISEESVKEMFSPYGSVEEVFIMKDNSTGLGKG----CSFVKFA 235
Score = 35.0 bits (79), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Query: 18 SLPEQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAAF 77
+L + P +F+ +P + DL + FS +G + + + +K TG+++G F ++
Sbjct: 361 NLSDSSGPPGANLFIFHVPNEWHQTDLIQAFSPFGELLSARIATEKSTGRNRGFAF-VSY 419
Query: 78 LKIARAA 84
I AA
Sbjct: 420 ENIESAA 426
>gi|82541152|ref|XP_724838.1| hypothetical protein [Plasmodium yoelii yoelii 17XNL]
gi|23479626|gb|EAA16403.1| FCA gamma-related [Plasmodium yoelii yoelii]
Length = 387
Score = 45.4 bits (106), Expect = 0.004, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 40/65 (61%), Gaps = 5/65 (7%)
Query: 18 SLPEQPDPDF-IKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAA 76
+ P P P IK+F+G++P++ +E L +F E+G V + ++RDK+T K +A
Sbjct: 75 TFPCHPAPPVSIKLFIGRVPKNYEEEQLRPIFEEFGIVNEVVIIRDKITNIHK----SSA 130
Query: 77 FLKIA 81
F+K+A
Sbjct: 131 FVKMA 135
Score = 41.6 bits (96), Expect = 0.059, Method: Composition-based stats.
Identities = 20/56 (35%), Positives = 33/56 (58%), Gaps = 4/56 (7%)
Query: 26 DFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAAFLKIA 81
D K+F+G +P+++ E + MFS YG V + +++D TG KG +F+K A
Sbjct: 183 DQAKLFIGSLPKNITEESIKDMFSVYGSVEEVFIMKDNSTGLGKG----CSFVKFA 234
>gi|429329849|gb|AFZ81608.1| hypothetical protein BEWA_010220 [Babesia equi]
Length = 404
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 40/69 (57%), Gaps = 3/69 (4%)
Query: 18 SLPEQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAAF 77
+ P PD +K FVG + + DEA+L+ FS+YG++ V+RD +TG+ +G F
Sbjct: 98 ATPNAPDST-LKFFVGGLHPNCDEAELSNYFSKYGQIVTSQVMRDFMTGRHRG--FGFVT 154
Query: 78 LKIARAAIE 86
LKI ++
Sbjct: 155 LKIQSNTMD 163
>gi|261488362|emb|CBH19556.1| RNA recognition motif containing protein [Oryza sativa Indica
Group]
Length = 156
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 27/42 (64%)
Query: 29 KMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKG 70
K+FVG +PR EAD K F +YG + + ++RDK T Q +G
Sbjct: 24 KIFVGGLPRDTTEADFVKHFGQYGEIVDSVIMRDKHTSQPRG 65
>gi|84998348|ref|XP_953895.1| RNA-binding (SR) protein [Theileria annulata]
gi|65304893|emb|CAI73218.1| RNA-binding (SR) protein, putative [Theileria annulata]
Length = 303
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 33/52 (63%)
Query: 19 LPEQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKG 70
L + D + +K+F G + RS DL + FS+YG V + ++RDK TG+S+G
Sbjct: 19 LLTESDYESLKIFAGGLTRSTTPEDLKEYFSKYGEVTHTEIVRDKNTGRSRG 70
>gi|294937440|ref|XP_002782069.1| Ser/Arg-rich splicing factor, putative [Perkinsus marinus ATCC
50983]
gi|239893400|gb|EER13864.1| Ser/Arg-rich splicing factor, putative [Perkinsus marinus ATCC
50983]
Length = 408
Score = 45.4 bits (106), Expect = 0.004, Method: Composition-based stats.
Identities = 21/53 (39%), Positives = 33/53 (62%)
Query: 18 SLPEQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKG 70
+LP + D K+F+G +P D L +M S+YG V N NV+ D+ TG+++G
Sbjct: 192 TLPYRVPDDPKKVFIGGLPPCADNNSLARMLSQYGSVVNCNVMFDRGTGRNRG 244
Score = 45.1 bits (105), Expect = 0.006, Method: Composition-based stats.
Identities = 22/69 (31%), Positives = 39/69 (56%), Gaps = 4/69 (5%)
Query: 2 GREKRRECTYEYVRSMSLPEQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLR 61
G R E + + LP+ P K+F+G +P+S D++ +T+ S+YG V + V+
Sbjct: 312 GEGYRAEQQWRQKEKLFLPDDP----CKVFLGGLPQSADQSRVTEHLSQYGHVQEVTVMY 367
Query: 62 DKVTGQSKG 70
D+ TG+ +G
Sbjct: 368 DRETGRHRG 376
Score = 40.4 bits (93), Expect = 0.13, Method: Composition-based stats.
Identities = 16/42 (38%), Positives = 30/42 (71%)
Query: 29 KMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKG 70
K+F+G +P + D+ +L FS++G + + V+ D+VTG+S+G
Sbjct: 54 KLFLGGLPSNCDKQELKDYFSQFGEIEDSIVMMDRVTGRSRG 95
>gi|162463757|ref|NP_001105347.1| nucleic acid binding protein1 [Zea mays]
gi|168526|gb|AAA33486.1| nucleic acid-binding protein [Zea mays]
gi|195637380|gb|ACG38158.1| ribonucleoprotein [Zea mays]
gi|219884029|gb|ACL52389.1| unknown [Zea mays]
gi|414884557|tpg|DAA60571.1| TPA: nucleic acid binding protein1 [Zea mays]
Length = 303
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 37/54 (68%), Gaps = 1/54 (1%)
Query: 20 PEQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
P Q P ++++VG +P +D++ L ++FSE+G+V + V+ D+ TG+S+G F
Sbjct: 212 PRQSGPS-LRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRETGRSRGFGF 264
>gi|414588980|tpg|DAA39551.1| TPA: hypothetical protein ZEAMMB73_959869 [Zea mays]
Length = 188
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 33/47 (70%)
Query: 26 DFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKI 72
+++K+FVG +PR+ E D+ +F E+G V + +++D+ TG+ +G +
Sbjct: 120 NYVKLFVGSVPRTATEEDVRPLFEEHGDVLEVALIKDRKTGEQQGML 166
>gi|388602821|ref|ZP_10161217.1| RNA binding protein [Vibrio campbellii DS40M4]
Length = 151
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 32/47 (68%)
Query: 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKG 70
DP ++VG +P +E+ + +F+EYG+VY + +++DK TG+ +G
Sbjct: 58 DPSTKTLYVGNLPYKANESHVRDLFAEYGQVYAVRLMKDKRTGKRRG 104
>gi|328698189|ref|XP_001949636.2| PREDICTED: hypothetical protein LOC100169481 [Acyrthosiphon
pisum]
Length = 297
Score = 45.4 bits (106), Expect = 0.004, Method: Composition-based stats.
Identities = 20/44 (45%), Positives = 31/44 (70%)
Query: 30 MFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
+FVG +P + E D+ +FS+YG + N+N++RDK TG+ KG F
Sbjct: 36 IFVGGLPYDLSEGDIMSIFSQYGEITNLNLVRDKDTGKQKGFCF 79
>gi|226443342|ref|NP_001139887.1| zinc finger CCHC-type and RNA-binding motif-containing protein 1
[Salmo salar]
gi|221219686|gb|ACM08504.1| Zinc finger CCHC-type and RNA-binding motif-containing protein 1
[Salmo salar]
Length = 221
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 32/49 (65%)
Query: 25 PDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
P ++V +P S+ +DL K+FS+YG+V + +++DK T +SKG F
Sbjct: 7 PSRSTVYVSNLPFSLTNSDLHKLFSKYGKVVKVTIVKDKETRKSKGVAF 55
>gi|195134917|ref|XP_002011883.1| GI14443 [Drosophila mojavensis]
gi|193909137|gb|EDW08004.1| GI14443 [Drosophila mojavensis]
Length = 88
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 29/45 (64%)
Query: 29 KMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
++FVG +P ++ +L F E+GRV N NV+ DK TG SKG F
Sbjct: 14 RIFVGNLPWTVGHQELRGYFKEFGRVLNANVIFDKKTGCSKGYGF 58
>gi|302036839|ref|YP_003797161.1| RNA-binding protein [Candidatus Nitrospira defluvii]
gi|190343253|gb|ACE75641.1| RNA-binding protein [Candidatus Nitrospira defluvii]
gi|300604903|emb|CBK41236.1| RNA-binding protein [Candidatus Nitrospira defluvii]
Length = 107
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 38/58 (65%), Gaps = 1/58 (1%)
Query: 29 KMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF-EAAFLKIARAAI 85
K++VG +P + E+ L+ +FS +G V + V+ DK TGQS+G F E + + A+AAI
Sbjct: 4 KLYVGGLPYAATESQLSNLFSAHGTVESARVITDKFTGQSRGFGFVEMSTAEEAKAAI 61
>gi|160899081|ref|YP_001564663.1| RNP-1 like RNA-binding protein [Delftia acidovorans SPH-1]
gi|333914782|ref|YP_004488514.1| RNP-1 like RNA-binding protein [Delftia sp. Cs1-4]
gi|160364665|gb|ABX36278.1| RNP-1 like RNA-binding protein [Delftia acidovorans SPH-1]
gi|333744982|gb|AEF90159.1| RNP-1 like RNA-binding protein [Delftia sp. Cs1-4]
Length = 115
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 39/58 (67%), Gaps = 1/58 (1%)
Query: 29 KMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF-EAAFLKIARAAI 85
K++VG +P S+ ++ L F+E+G V + V+ D+ TG+SKG F E A ++A+AAI
Sbjct: 4 KIYVGNLPYSVTDSSLESNFAEFGNVASAKVMMDRETGRSKGFGFVEMASAEVAQAAI 61
>gi|32482130|gb|AAP84415.1| FCA protein, partial [Triticum aestivum]
Length = 743
Score = 45.4 bits (106), Expect = 0.004, Method: Composition-based stats.
Identities = 17/47 (36%), Positives = 33/47 (70%)
Query: 27 FIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
++K+FVG +PR+ +E D+ +F ++G V + ++RD+ TG+ +G F
Sbjct: 125 YVKLFVGSVPRTANEDDVRPLFEDHGDVLEVALIRDRKTGEQQGCCF 171
>gi|195393638|ref|XP_002055460.1| GJ18781 [Drosophila virilis]
gi|194149970|gb|EDW65661.1| GJ18781 [Drosophila virilis]
Length = 88
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 29/45 (64%)
Query: 29 KMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
++FVG +P ++ +L F E+GRV N NV+ DK TG SKG F
Sbjct: 14 RIFVGNLPWTVGHQELRGYFKEFGRVVNANVIFDKKTGCSKGYGF 58
>gi|168274276|dbj|BAG09558.1| chloroplast RNA binding protein [Mesembryanthemum crystallinum]
Length = 306
Score = 45.4 bits (106), Expect = 0.004, Method: Composition-based stats.
Identities = 22/56 (39%), Positives = 38/56 (67%), Gaps = 3/56 (5%)
Query: 18 SLPEQPDPDF---IKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKG 70
S PE+P +F +++VG +P +D A L ++FSE+G+V + V+ D+ TG+S+G
Sbjct: 209 SRPERPPREFEPSCRVYVGNLPWDVDNARLEQVFSEHGKVLSARVVSDRETGRSRG 264
>gi|13357168|gb|AAK20025.1|AF234183_1 sex-lethal protein SXL1 [Lucilia cuprina]
Length = 324
Score = 45.4 bits (106), Expect = 0.004, Method: Composition-based stats.
Identities = 24/74 (32%), Positives = 42/74 (56%), Gaps = 12/74 (16%)
Query: 3 REKRRECTYEYVRSMSLPEQPDPDFIK---MFVGQIPRSMDEADLTKMFSEYGRVYNINV 59
R KR + +Y +P + IK ++V +PR++ + +L K+F +YG + N+
Sbjct: 169 RNKRLKVSYA---------RPGGESIKDTNLYVTNLPRTITDDELEKIFGKYGNIVQKNI 219
Query: 60 LRDKVTGQSKGKIF 73
LRDK+TG+ +G F
Sbjct: 220 LRDKLTGKPRGVAF 233
>gi|397632370|gb|EJK70525.1| hypothetical protein THAOC_08111, partial [Thalassiosira
oceanica]
Length = 548
Score = 45.4 bits (106), Expect = 0.004, Method: Composition-based stats.
Identities = 18/46 (39%), Positives = 32/46 (69%)
Query: 28 IKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
+K+FVGQ+P+++ E DL +F YG + ++ V+RD+ +G +G F
Sbjct: 23 LKLFVGQVPKTLIEEDLAYVFEPYGPIVDLTVIRDRRSGNHRGCAF 68
Score = 35.0 bits (79), Expect = 5.7, Method: Composition-based stats.
Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Query: 20 PEQP--DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKG 70
P +P P +F+ +P + +ADL F+ +G V + V D+ TG+SKG
Sbjct: 361 PPRPREGPAGANLFIYHLPIDLTDADLATAFNPFGNVISAKVYVDRYTGESKG 413
Score = 34.3 bits (77), Expect = 8.7, Method: Composition-based stats.
Identities = 12/35 (34%), Positives = 25/35 (71%)
Query: 29 KMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDK 63
K+FVGQ+PR +E + +F+ YG + +++++R +
Sbjct: 122 KLFVGQLPRDAEEDFVRDLFAPYGSIVSVHIIRKR 156
>gi|90407376|ref|ZP_01215561.1| hypothetical RNA-binding protein [Psychromonas sp. CNPT3]
gi|90311527|gb|EAS39627.1| hypothetical RNA-binding protein [Psychromonas sp. CNPT3]
Length = 152
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 40/70 (57%), Gaps = 7/70 (10%)
Query: 1 MGREKRRECTYEYVRSMSLPEQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVL 60
MG K ++ +E + D D I ++VG +P +E + +FSE+G+V ++ ++
Sbjct: 48 MGSTKTKDTEHE-------DAEVDFDTITLYVGNLPYRANEIAIRTLFSEHGKVLSVRLM 100
Query: 61 RDKVTGQSKG 70
+DK TG+ +G
Sbjct: 101 KDKHTGKRRG 110
>gi|146422609|ref|XP_001487240.1| hypothetical protein PGUG_00617 [Meyerozyma guilliermondii ATCC
6260]
gi|146388361|gb|EDK36519.1| hypothetical protein PGUG_00617 [Meyerozyma guilliermondii ATCC
6260]
Length = 214
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 31/41 (75%)
Query: 30 MFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKG 70
++VG +P ++E D+ +FS+YG +IN++RD+ TG+S+G
Sbjct: 35 IYVGYLPLELEEKDIVAIFSQYGNPTHINLVRDRETGKSRG 75
>gi|6226775|sp|O97018.2|SXL_CHRRU RecName: Full=Sex-lethal homolog
gi|25291016|gb|AAN74807.1| sex-lethal [Chrysomya rufifacies]
Length = 307
Score = 45.4 bits (106), Expect = 0.004, Method: Composition-based stats.
Identities = 24/74 (32%), Positives = 42/74 (56%), Gaps = 12/74 (16%)
Query: 3 REKRRECTYEYVRSMSLPEQPDPDFIK---MFVGQIPRSMDEADLTKMFSEYGRVYNINV 59
R KR + +Y +P + IK ++V +PR++ + +L K+F +YG + N+
Sbjct: 152 RNKRLKVSYA---------RPGGESIKDTNLYVTNLPRTITDDELEKIFGKYGNIVQKNI 202
Query: 60 LRDKVTGQSKGKIF 73
LRDK+TG+ +G F
Sbjct: 203 LRDKLTGKPRGVAF 216
>gi|37588904|gb|AAH04145.2| TNRC4 protein, partial [Homo sapiens]
Length = 291
Score = 45.4 bits (106), Expect = 0.004, Method: Composition-based stats.
Identities = 18/40 (45%), Positives = 28/40 (70%)
Query: 34 QIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
QIPR ++E DL +F ++GR++ + V++DK TG KG F
Sbjct: 5 QIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAF 44
>gi|224091455|ref|XP_002309257.1| predicted protein [Populus trichocarpa]
gi|222855233|gb|EEE92780.1| predicted protein [Populus trichocarpa]
Length = 321
Score = 45.4 bits (106), Expect = 0.004, Method: Composition-based stats.
Identities = 19/42 (45%), Positives = 32/42 (76%)
Query: 29 KMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKG 70
K++VG +P SM ++LT++F E GRV++ V+ D+VT +S+G
Sbjct: 114 KLYVGNLPYSMTSSELTEVFEEAGRVFSAEVIYDRVTDRSRG 155
>gi|2204096|emb|CAB05392.1| FCA delta [Arabidopsis thaliana]
gi|5302786|emb|CAB46035.1| FCA delta protein [Arabidopsis thaliana]
gi|7268378|emb|CAB78671.1| FCA delta protein [Arabidopsis thaliana]
Length = 533
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 30/46 (65%)
Query: 28 IKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
+K+FVG +PR+ E ++ F ++G V + +++DK TGQ +G F
Sbjct: 120 VKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCF 165
>gi|32482116|gb|AAP84410.1| FCA protein [Triticum aestivum]
Length = 707
Score = 45.4 bits (106), Expect = 0.005, Method: Composition-based stats.
Identities = 17/47 (36%), Positives = 33/47 (70%)
Query: 27 FIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
++K+FVG +PR+ +E D+ +F ++G V + ++RD+ TG+ +G F
Sbjct: 101 YVKLFVGSVPRTANEDDVRPLFEDHGDVLEVALIRDRKTGEQQGCCF 147
>gi|186511881|ref|NP_193363.4| RNA binding / abscisic acid binding protein [Arabidopsis thaliana]
gi|332658326|gb|AEE83726.1| RNA binding / abscisic acid binding protein [Arabidopsis thaliana]
Length = 533
Score = 45.4 bits (106), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 30/46 (65%)
Query: 28 IKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
+K+FVG +PR+ E ++ F ++G V + +++DK TGQ +G F
Sbjct: 120 VKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCF 165
>gi|154303176|ref|XP_001551996.1| hypothetical protein BC1G_09608 [Botryotinia fuckeliana B05.10]
Length = 195
Score = 45.4 bits (106), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 34/54 (62%), Gaps = 4/54 (7%)
Query: 26 DFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAAFLK 79
D +++G +P + E D+ +FS+YG IN++RDK TG+SKG AFLK
Sbjct: 31 DTAYIYIGGLPFELSEGDILTIFSQYGEPTYINLIRDKETGKSKG----FAFLK 80
>gi|146088561|ref|XP_001466084.1| putative RNA-binding protein [Leishmania infantum JPCM5]
gi|134070186|emb|CAM68521.1| putative RNA-binding protein [Leishmania infantum JPCM5]
Length = 240
Score = 45.4 bits (106), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 36/51 (70%), Gaps = 1/51 (1%)
Query: 24 DPDFIK-MFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
DPD ++ + V +P M+EA + ++F ++GR+ ++ ++ DK+TG+S+G F
Sbjct: 39 DPDALRNLIVNYLPPLMNEAQVYELFGQFGRIESVKIIYDKITGESRGYGF 89
>gi|387219259|gb|AFJ69338.1| hypothetical protein NGATSA_3013400, partial [Nannochloropsis
gaditana CCMP526]
Length = 290
Score = 45.4 bits (106), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 33/43 (76%), Gaps = 1/43 (2%)
Query: 28 IKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKG 70
I +FVG +P SM EAD+ +MFSE+G V ++ +++D++ +SKG
Sbjct: 187 ISVFVGNLPFSMAEADVQEMFSEHGGVVSVTIVKDQLN-RSKG 228
>gi|398016390|ref|XP_003861383.1| RNA-binding protein, putative [Leishmania donovani]
gi|322499609|emb|CBZ34683.1| RNA-binding protein, putative [Leishmania donovani]
Length = 240
Score = 45.4 bits (106), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 36/51 (70%), Gaps = 1/51 (1%)
Query: 24 DPDFIK-MFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
DPD ++ + V +P M+EA + ++F ++GR+ ++ ++ DK+TG+S+G F
Sbjct: 39 DPDALRNLIVNYLPPLMNEAQVYELFGQFGRIESVKIIYDKITGESRGYGF 89
>gi|313221560|emb|CBY36055.1| unnamed protein product [Oikopleura dioica]
gi|313239684|emb|CBY14576.1| unnamed protein product [Oikopleura dioica]
Length = 236
Score = 45.4 bits (106), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 38/70 (54%), Gaps = 4/70 (5%)
Query: 8 ECTYEYVRSMSLPEQPDP----DFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDK 63
E Y+ +R + PE D ++ G + + E D+ +FS++G + N+N++RD+
Sbjct: 12 ELNYKELRHGTNPENSWHMQYKDSAWIYAGNLSYKLTEGDILAVFSQFGEISNVNLVRDR 71
Query: 64 VTGQSKGKIF 73
TG SKG F
Sbjct: 72 ETGTSKGFCF 81
>gi|119183786|ref|XP_001242884.1| hypothetical protein CIMG_06780 [Coccidioides immitis RS]
gi|392865790|gb|EAS31617.2| U2 snRNP component IST3 [Coccidioides immitis RS]
Length = 269
Score = 45.4 bits (106), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 35/54 (64%), Gaps = 4/54 (7%)
Query: 26 DFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAAFLK 79
D +++G +P + E D+ +FS++G ++N++RDK TG+SKG AFLK
Sbjct: 31 DTAYIYIGGLPYDLSEGDILTIFSQFGEPVHLNLVRDKDTGKSKG----FAFLK 80
>gi|32482092|gb|AAP84399.1| FCA protein [Triticum aestivum]
Length = 740
Score = 45.4 bits (106), Expect = 0.005, Method: Composition-based stats.
Identities = 17/47 (36%), Positives = 33/47 (70%)
Query: 27 FIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
++K+FVG +PR+ +E D+ +F ++G V + ++RD+ TG+ +G F
Sbjct: 123 YVKLFVGSVPRTANEDDVRPLFEDHGDVLEVALIRDRKTGEQQGCCF 169
>gi|71748718|ref|XP_823414.1| hypothetical protein [Trypanosoma brucei brucei strain 927/4
GUTat10.1]
gi|70833082|gb|EAN78586.1| RNA-binding protein, putative [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
gi|261333365|emb|CBH16360.1| RBP7 [Trypanosoma brucei gambiense DAL972]
Length = 116
Score = 45.4 bits (106), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 30/49 (61%)
Query: 25 PDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
P ++FVGQ+ E D+ +F YG+ ++N+LRDK T +SKG F
Sbjct: 2 PPRARLFVGQLNFDATEDDIYALFDFYGKALHVNILRDKETQKSKGSAF 50
>gi|258570729|ref|XP_002544168.1| U2 snRNP component IST3 [Uncinocarpus reesii 1704]
gi|237904438|gb|EEP78839.1| U2 snRNP component IST3 [Uncinocarpus reesii 1704]
Length = 263
Score = 45.4 bits (106), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 35/54 (64%), Gaps = 4/54 (7%)
Query: 26 DFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAAFLK 79
D +++G +P + E D+ +FS++G ++N++RDK TG+SKG AFLK
Sbjct: 31 DTAYIYIGGLPYDLSEGDILTIFSQFGEPVHLNLVRDKETGKSKG----FAFLK 80
>gi|118402071|ref|XP_001033355.1| hypothetical protein TTHERM_00421000 [Tetrahymena thermophila]
gi|89287703|gb|EAR85692.1| hypothetical protein TTHERM_00421000 [Tetrahymena thermophila
SB210]
Length = 307
Score = 45.4 bits (106), Expect = 0.005, Method: Composition-based stats.
Identities = 24/63 (38%), Positives = 40/63 (63%), Gaps = 2/63 (3%)
Query: 28 IKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF-EAAFLKIARAAIE 86
+K+FVGQ+P++ ++ + FS++GR+Y + ++RD GQ KG F + A + A AIE
Sbjct: 54 LKLFVGQLPKTWEKEQVKDFFSKFGRIYEVQIIRDN-KGQHKGCAFVKFASMTDAEKAIE 112
Query: 87 PQK 89
K
Sbjct: 113 AVK 115
>gi|297303177|ref|XP_002806144.1| PREDICTED: uncharacterized RNA-binding protein C660.15-like,
partial [Macaca mulatta]
Length = 265
Score = 45.4 bits (106), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 12/82 (14%)
Query: 1 MGREKRRECTYEYVRSMSLPEQPDPDFI------------KMFVGQIPRSMDEADLTKMF 48
MG+ K + YE S P D I K+F+G IP +D+ L + F
Sbjct: 156 MGKGKGGDYMYEGGYSSKYSAPPVGDGISFASPSDGYNPCKLFIGGIPSDLDQGRLDQFF 215
Query: 49 SEYGRVYNINVLRDKVTGQSKG 70
S+YG + + V++D++TG+ +G
Sbjct: 216 SQYGNIVDSVVMKDRITGKPRG 237
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.320 0.136 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,331,672,820
Number of Sequences: 23463169
Number of extensions: 44099951
Number of successful extensions: 132142
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 8406
Number of HSP's successfully gapped in prelim test: 1133
Number of HSP's that attempted gapping in prelim test: 118815
Number of HSP's gapped (non-prelim): 14468
length of query: 91
length of database: 8,064,228,071
effective HSP length: 61
effective length of query: 30
effective length of database: 6,632,974,762
effective search space: 198989242860
effective search space used: 198989242860
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 69 (31.2 bits)