Query psy11978
Match_columns 91
No_of_seqs 181 out of 1191
Neff 9.4
Searched_HMMs 29240
Date Fri Aug 16 15:29:45 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11978.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/11978hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fxv_A ELAV-like protein 1; RN 99.9 1.3E-22 4.3E-27 113.5 9.7 66 24-89 16-82 (99)
2 3s8s_A Histone-lysine N-methyl 99.9 4E-22 1.4E-26 113.4 9.7 65 25-89 4-69 (110)
3 2lkz_A RNA-binding protein 5; 99.9 7.5E-22 2.6E-26 109.7 5.7 65 25-89 7-74 (95)
4 2la6_A RNA-binding protein FUS 99.9 1.1E-20 3.7E-25 105.1 10.2 68 22-89 8-84 (99)
5 2dgp_A Bruno-like 4, RNA bindi 99.9 4E-21 1.4E-25 107.9 8.4 69 21-89 7-76 (106)
6 1x4e_A RNA binding motif, sing 99.9 4.4E-21 1.5E-25 103.9 8.0 65 25-89 3-68 (85)
7 2lxi_A RNA-binding protein 10; 99.8 7E-22 2.4E-26 108.9 4.7 62 28-89 2-65 (91)
8 1p27_B RNA-binding protein 8A; 99.8 1.1E-20 3.9E-25 106.0 9.7 68 22-89 18-86 (106)
9 3s7r_A Heterogeneous nuclear r 99.8 1E-20 3.5E-25 102.9 9.2 66 23-88 7-73 (87)
10 3bs9_A Nucleolysin TIA-1 isofo 99.8 1.1E-20 3.6E-25 102.7 9.2 66 24-89 3-69 (87)
11 1x5u_A Splicing factor 3B subu 99.8 1.2E-20 4.2E-25 105.8 9.6 68 22-89 10-78 (105)
12 2div_A TRNA selenocysteine ass 99.8 1.2E-20 4.1E-25 104.8 9.5 66 24-89 6-73 (99)
13 1x4h_A RNA-binding protein 28; 99.8 1.4E-20 4.9E-25 106.3 9.8 67 23-89 11-78 (111)
14 2cq0_A Eukaryotic translation 99.8 1.5E-20 5.2E-25 105.1 9.8 68 22-89 10-78 (103)
15 3p5t_L Cleavage and polyadenyl 99.8 2.9E-21 9.9E-26 105.9 6.5 62 28-89 2-66 (90)
16 2dnh_A Bruno-like 5, RNA bindi 99.8 3E-20 1E-24 104.2 10.8 65 24-89 12-77 (105)
17 2dgo_A Cytotoxic granule-assoc 99.8 2.7E-20 9.1E-25 106.0 10.7 68 22-89 10-78 (115)
18 3ns6_A Eukaryotic translation 99.8 2.2E-21 7.6E-26 108.4 6.1 64 26-89 5-75 (100)
19 2m2b_A RNA-binding protein 10; 99.8 4.1E-21 1.4E-25 111.9 7.2 69 22-90 18-88 (131)
20 2cqc_A Arginine/serine-rich sp 99.8 2.6E-20 8.8E-25 102.6 10.1 67 23-89 11-78 (95)
21 2cpz_A CUG triplet repeat RNA- 99.8 1.8E-20 6.1E-25 106.7 9.7 68 22-89 20-88 (115)
22 2dnz_A Probable RNA-binding pr 99.8 2.1E-20 7.1E-25 103.1 9.5 65 25-89 3-68 (95)
23 2dgs_A DAZ-associated protein 99.8 2.7E-20 9.3E-25 103.4 10.0 66 23-89 6-72 (99)
24 2dnm_A SRP46 splicing factor; 99.8 9E-21 3.1E-25 106.1 8.1 67 23-89 9-76 (103)
25 2cqd_A RNA-binding region cont 99.8 2.7E-20 9.4E-25 106.1 10.1 68 22-89 12-80 (116)
26 3mdf_A Peptidyl-prolyl CIS-tra 99.8 1.4E-20 4.7E-25 101.8 8.4 66 24-89 4-70 (85)
27 1s79_A Lupus LA protein; RRM, 99.8 1.6E-20 5.5E-25 105.6 8.9 64 24-89 8-72 (103)
28 1whw_A Hypothetical protein ri 99.8 2.1E-20 7.3E-25 103.8 9.3 66 24-89 5-71 (99)
29 2e5h_A Zinc finger CCHC-type a 99.8 2.8E-20 9.6E-25 102.4 9.6 67 23-89 12-79 (94)
30 2do4_A Squamous cell carcinoma 99.8 4.6E-20 1.6E-24 102.7 10.6 67 22-89 12-79 (100)
31 3md1_A Nuclear and cytoplasmic 99.8 3.3E-20 1.1E-24 99.9 9.3 62 28-89 2-64 (83)
32 3n9u_C Cleavage and polyadenyl 99.8 1.9E-20 6.5E-25 112.2 9.1 64 26-89 54-120 (156)
33 2rs2_A Musashi-1, RNA-binding 99.8 1.5E-20 5.2E-25 106.5 8.2 67 23-89 21-88 (109)
34 1oo0_B CG8781-PA, drosophila Y 99.8 2.2E-20 7.4E-25 105.6 8.8 69 21-89 20-89 (110)
35 2khc_A Testis-specific RNP-typ 99.8 3E-20 1E-24 106.1 9.5 67 23-89 36-103 (118)
36 2jrs_A RNA-binding protein 39; 99.8 4.6E-20 1.6E-24 104.4 9.8 67 23-89 22-89 (108)
37 2dhg_A TRNA selenocysteine ass 99.8 5.1E-20 1.7E-24 103.1 9.9 65 24-89 6-72 (104)
38 2cph_A RNA binding motif prote 99.8 4E-20 1.4E-24 103.9 9.5 67 22-88 10-78 (107)
39 4f02_A Polyadenylate-binding p 99.8 2.5E-20 8.5E-25 115.9 9.3 67 23-89 11-78 (213)
40 2x1f_A MRNA 3'-END-processing 99.8 3.2E-20 1.1E-24 102.7 8.5 63 27-89 2-65 (96)
41 4f25_A Polyadenylate-binding p 99.8 2.8E-20 9.7E-25 106.2 8.4 61 27-89 5-66 (115)
42 2dng_A Eukaryotic translation 99.8 1.1E-19 3.7E-24 101.7 10.6 66 22-89 10-76 (103)
43 1x5s_A Cold-inducible RNA-bind 99.8 4.2E-20 1.4E-24 103.1 8.9 67 23-89 8-75 (102)
44 1x5t_A Splicing factor 3B subu 99.8 2.6E-20 8.7E-25 102.9 7.4 65 25-89 3-69 (96)
45 2kxn_B Transformer-2 protein h 99.8 5.6E-20 1.9E-24 107.0 9.2 67 23-89 42-109 (129)
46 2cpf_A RNA binding motif prote 99.8 3.9E-20 1.3E-24 102.6 8.2 65 25-89 3-71 (98)
47 2cqb_A Peptidyl-prolyl CIS-tra 99.8 2.8E-20 9.5E-25 103.8 7.6 66 24-89 9-75 (102)
48 1x5o_A RNA binding motif, sing 99.8 1.1E-19 3.9E-24 103.2 10.2 66 23-89 21-87 (114)
49 1u6f_A Tcubp1, RNA-binding pro 99.8 7E-20 2.4E-24 107.2 9.5 67 23-89 38-105 (139)
50 3ex7_B RNA-binding protein 8A; 99.8 5E-20 1.7E-24 106.3 8.8 68 22-89 17-85 (126)
51 1wi8_A EIF-4B, eukaryotic tran 99.8 7.4E-20 2.5E-24 102.5 9.2 66 22-89 10-77 (104)
52 2dh8_A DAZ-associated protein 99.8 5.8E-20 2E-24 103.1 8.8 66 22-87 11-77 (105)
53 2d9p_A Polyadenylate-binding p 99.8 1.2E-19 4.1E-24 101.4 10.0 65 23-89 11-76 (103)
54 3ulh_A THO complex subunit 4; 99.8 1.1E-19 3.8E-24 102.1 9.8 67 22-89 24-91 (107)
55 2cqg_A TDP-43, TAR DNA-binding 99.8 1.6E-19 5.6E-24 100.9 10.4 65 23-87 11-76 (103)
56 2cpe_A RNA-binding protein EWS 99.8 6.4E-20 2.2E-24 104.1 8.8 68 22-89 10-86 (113)
57 2ywk_A Putative RNA-binding pr 99.8 7.2E-20 2.4E-24 100.9 8.5 66 23-89 12-78 (95)
58 2fy1_A RNA-binding motif prote 99.8 7.7E-20 2.6E-24 104.6 8.8 65 24-89 4-69 (116)
59 2do0_A HnRNP M, heterogeneous 99.8 3.1E-19 1.1E-23 101.3 10.7 66 23-89 11-77 (114)
60 2krb_A Eukaryotic translation 99.8 7.3E-20 2.5E-24 98.5 7.6 60 28-89 2-68 (81)
61 1h2v_Z 20 kDa nuclear CAP bind 99.8 2E-19 6.8E-24 107.2 10.2 66 24-89 36-102 (156)
62 1p1t_A Cleavage stimulation fa 99.8 2.9E-20 1E-24 104.0 6.2 64 26-89 7-71 (104)
63 2cq4_A RNA binding motif prote 99.8 3.2E-20 1.1E-24 105.5 6.3 63 26-89 24-87 (114)
64 1uaw_A Mouse-musashi-1; RNP-ty 99.8 2.1E-20 7E-25 99.5 5.0 62 28-89 1-63 (77)
65 1sjq_A Polypyrimidine tract-bi 99.8 9.5E-20 3.2E-24 102.8 7.9 60 24-89 13-73 (105)
66 1rk8_A CG8781-PA, CG8781-PA pr 99.8 2E-19 6.9E-24 108.2 9.9 67 23-89 68-135 (165)
67 2cqp_A RNA-binding protein 12; 99.8 7.7E-20 2.6E-24 101.3 7.5 66 24-89 12-78 (98)
68 1wg5_A Heterogeneous nuclear r 99.8 2E-19 6.8E-24 101.0 9.2 64 23-87 11-76 (104)
69 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.8 2.2E-19 7.4E-24 104.9 9.6 67 23-89 59-126 (140)
70 3ucg_A Polyadenylate-binding p 99.8 1.8E-19 6.1E-24 98.2 8.6 62 27-89 6-68 (89)
71 2dgv_A HnRNP M, heterogeneous 99.8 4.2E-19 1.5E-23 97.3 9.9 65 23-89 4-69 (92)
72 2dis_A Unnamed protein product 99.8 1.4E-19 4.7E-24 102.0 7.9 66 24-89 5-73 (109)
73 4a8x_A RNA-binding protein wit 99.8 1.1E-19 3.7E-24 98.8 7.2 64 26-89 3-68 (88)
74 2mss_A Protein (musashi1); RNA 99.8 7.8E-20 2.7E-24 96.9 6.3 60 29-89 1-61 (75)
75 2ek1_A RNA-binding protein 12; 99.8 6.2E-20 2.1E-24 101.2 6.1 65 25-89 13-78 (95)
76 2cq3_A RNA-binding protein 9; 99.8 7.9E-19 2.7E-23 98.1 10.6 66 22-89 10-76 (103)
77 2j76_E EIF-4B, EIF4B, eukaryot 99.8 6.3E-20 2.2E-24 102.4 6.0 65 23-89 15-81 (100)
78 3q2s_C Cleavage and polyadenyl 99.8 1.2E-19 4.1E-24 114.4 7.9 64 26-89 67-133 (229)
79 2kn4_A Immunoglobulin G-bindin 99.8 2.6E-19 8.8E-24 106.7 8.9 66 24-89 67-133 (158)
80 2cqi_A Nucleolysin TIAR; RNA r 99.8 5.5E-19 1.9E-23 98.7 9.7 65 23-89 11-76 (103)
81 1x4b_A Heterogeneous nuclear r 99.8 9E-20 3.1E-24 104.0 6.4 62 26-87 26-88 (116)
82 2dnl_A Cytoplasmic polyadenyla 99.8 9.7E-20 3.3E-24 103.8 6.5 63 25-88 6-72 (114)
83 2nlw_A Eukaryotic translation 99.8 2E-19 6.7E-24 101.2 7.6 64 24-89 12-82 (105)
84 2hgl_A HNRPF protein, heteroge 99.8 1.9E-19 6.6E-24 105.7 7.8 65 23-89 40-108 (136)
85 2cpy_A RNA-binding protein 12; 99.8 2.5E-19 8.5E-24 102.0 8.0 63 24-87 12-76 (114)
86 2kt5_A RNA and export factor-b 99.8 6.6E-19 2.3E-23 101.4 9.7 66 23-89 31-97 (124)
87 2lea_A Serine/arginine-rich sp 99.8 9.2E-20 3.1E-24 106.8 6.1 68 22-89 42-110 (135)
88 1wez_A HnRNP H', FTP-3, hetero 99.8 2.9E-19 9.8E-24 100.2 7.7 61 24-86 12-73 (102)
89 1wel_A RNA-binding protein 12; 99.8 1.3E-19 4.3E-24 104.6 6.4 66 23-89 21-87 (124)
90 2db1_A Heterogeneous nuclear r 99.8 4.4E-19 1.5E-23 101.7 8.3 64 24-89 14-81 (118)
91 1x4a_A Splicing factor, argini 99.8 1.5E-18 5.2E-23 97.9 10.2 65 22-89 17-82 (109)
92 2ki2_A SS-DNA binding protein 99.8 7.2E-20 2.5E-24 100.1 4.6 61 28-89 2-63 (90)
93 2ad9_A Polypyrimidine tract-bi 99.8 4.5E-19 1.5E-23 102.1 8.0 61 23-89 27-88 (119)
94 2dgx_A KIAA0430 protein; RRM d 99.8 5.7E-19 1.9E-23 97.8 8.2 63 24-89 6-73 (96)
95 2jwn_A Embryonic polyadenylate 99.8 5E-19 1.7E-23 101.8 8.2 62 27-89 36-98 (124)
96 1l3k_A Heterogeneous nuclear r 99.8 9.3E-19 3.2E-23 106.6 9.5 66 23-88 9-75 (196)
97 1iqt_A AUF1, heterogeneous nuc 99.8 1.2E-19 4.1E-24 96.1 4.8 60 29-88 1-61 (75)
98 1x4d_A Matrin 3; structural ge 99.8 4.8E-19 1.6E-23 99.5 7.4 60 24-89 12-73 (102)
99 2dnn_A RNA-binding protein 12; 99.8 4.4E-19 1.5E-23 100.7 7.4 63 24-89 13-76 (109)
100 2dgw_A Probable RNA-binding pr 99.8 1.9E-18 6.4E-23 94.6 9.6 63 24-89 7-70 (91)
101 2lmi_A GRSF-1, G-rich sequence 99.8 2.7E-19 9.4E-24 100.9 6.4 65 23-89 7-75 (107)
102 2cpi_A CCR4-NOT transcription 99.8 7.4E-19 2.5E-23 99.7 8.1 66 24-89 12-84 (111)
103 2cq1_A PTB-like protein L; RRM 99.8 1.2E-18 4.1E-23 97.7 8.7 60 24-89 12-72 (101)
104 2xs2_A Deleted in azoospermia- 99.8 2.5E-19 8.5E-24 100.0 5.4 61 25-86 7-68 (102)
105 2wbr_A GW182, gawky, LD47780P; 99.8 7.5E-19 2.6E-23 96.0 7.1 58 27-90 7-65 (89)
106 3nmr_A Cugbp ELAV-like family 99.8 1.5E-18 5.1E-23 103.9 8.9 64 26-89 2-68 (175)
107 2err_A Ataxin-2-binding protei 99.8 8.2E-19 2.8E-23 99.2 7.3 66 22-89 24-90 (109)
108 2dha_A FLJ20171 protein; RRM d 99.8 7.2E-19 2.5E-23 101.7 7.1 62 25-87 21-87 (123)
109 3r27_A HnRNP L, heterogeneous 99.8 1.8E-18 6.3E-23 96.8 8.1 60 24-89 18-78 (100)
110 2hgm_A HNRPF protein, heteroge 99.8 1.2E-18 4E-23 101.2 7.5 64 24-89 39-105 (126)
111 2f3j_A RNA and export factor b 99.8 3.2E-18 1.1E-22 104.3 9.8 64 25-89 86-150 (177)
112 2a3j_A U1 small nuclear ribonu 99.8 2.4E-18 8.2E-23 100.0 8.6 63 24-89 26-93 (127)
113 2j8a_A Histone-lysine N-methyl 99.8 8.8E-19 3E-23 101.7 6.5 59 28-86 3-74 (136)
114 1wex_A Hypothetical protein (r 99.8 5E-18 1.7E-22 95.6 9.2 60 24-89 12-72 (104)
115 1x4c_A Splicing factor, argini 99.8 5.8E-18 2E-22 95.5 9.0 59 24-89 12-71 (108)
116 2hgn_A Heterogeneous nuclear r 99.8 7.8E-19 2.7E-23 103.5 5.5 63 24-89 43-106 (139)
117 1fxl_A Paraneoplastic encephal 99.8 6E-18 2E-22 100.4 9.5 63 27-89 2-65 (167)
118 2cpx_A Hypothetical protein FL 99.8 4.9E-19 1.7E-23 100.6 4.5 67 23-89 21-88 (115)
119 2fc9_A NCL protein; structure 99.8 4.9E-18 1.7E-22 94.5 8.4 63 23-89 11-74 (101)
120 3lqv_A PRE-mRNA branch site pr 99.8 6.4E-18 2.2E-22 96.0 8.8 63 24-89 5-68 (115)
121 2lcw_A RNA-binding protein FUS 99.6 5E-20 1.7E-24 105.1 0.0 66 24-89 4-78 (116)
122 2cjk_A Nuclear polyadenylated 99.8 2.4E-18 8.3E-23 102.5 7.2 62 26-87 2-64 (167)
123 2fc8_A NCL protein; structure 99.8 8.5E-18 2.9E-22 93.6 8.9 65 22-89 10-75 (102)
124 1fj7_A Nucleolin RBD1, protein 99.8 2.5E-19 8.6E-24 99.8 2.4 64 24-89 14-78 (101)
125 1b7f_A Protein (SXL-lethal pro 99.7 5E-18 1.7E-22 101.1 7.9 63 27-89 3-66 (168)
126 3md3_A Nuclear and cytoplasmic 99.7 2.5E-17 8.4E-22 97.7 10.8 68 22-89 82-150 (166)
127 1why_A Hypothetical protein ri 99.7 1.4E-17 4.9E-22 92.1 9.2 61 23-89 13-74 (97)
128 3pgw_S U1-70K; protein-RNA com 99.7 6.6E-18 2.3E-22 114.8 9.2 65 25-89 100-165 (437)
129 1x4f_A Matrin 3; structural ge 99.7 3.6E-18 1.2E-22 97.4 6.7 60 24-89 22-83 (112)
130 2jvr_A Nucleolar protein 3; RN 99.7 3.2E-18 1.1E-22 97.4 6.4 62 24-89 25-88 (111)
131 2dnq_A RNA-binding protein 4B; 99.7 1.6E-17 5.4E-22 90.8 8.8 59 23-89 4-63 (90)
132 2e5j_A Methenyltetrahydrofolat 99.7 1.2E-17 4.1E-22 92.5 8.1 62 23-89 15-77 (97)
133 2ytc_A PRE-mRNA-splicing facto 99.7 2.7E-17 9.2E-22 88.8 9.2 59 24-88 9-68 (85)
134 2cq2_A Hypothetical protein LO 99.7 3.9E-18 1.3E-22 97.4 6.0 59 25-89 23-84 (114)
135 3d2w_A TAR DNA-binding protein 99.7 7.8E-18 2.7E-22 92.2 7.0 57 23-84 7-64 (89)
136 2jvo_A Nucleolar protein 3; nu 99.7 1.2E-17 4.2E-22 94.4 7.9 60 22-89 26-86 (108)
137 2la4_A Nuclear and cytoplasmic 99.7 1.6E-17 5.6E-22 92.4 8.2 59 25-89 25-84 (101)
138 2xnq_A Nuclear polyadenylated 99.7 2E-17 6.9E-22 91.8 8.5 60 22-89 17-78 (97)
139 2cpj_A Non-POU domain-containi 99.7 1.6E-17 5.6E-22 92.2 8.1 62 22-89 10-72 (99)
140 1nu4_A U1A RNA binding domain; 99.7 3.8E-18 1.3E-22 94.2 5.2 63 24-89 5-72 (97)
141 2qfj_A FBP-interacting repress 99.7 1.8E-17 6E-22 102.2 8.5 64 26-89 27-91 (216)
142 2g4b_A Splicing factor U2AF 65 99.7 3.1E-17 1.1E-21 98.0 9.3 66 24-89 91-157 (172)
143 2voo_A Lupus LA protein; RNA-b 99.7 3.2E-17 1.1E-21 101.0 9.2 62 27-89 109-171 (193)
144 3nmr_A Cugbp ELAV-like family 99.7 2.9E-17 1E-21 98.2 8.8 64 25-89 93-157 (175)
145 2i2y_A Fusion protein consists 99.7 2.6E-17 8.8E-22 97.4 8.3 62 23-89 69-131 (150)
146 1l3k_A Heterogeneous nuclear r 99.7 4.5E-17 1.6E-21 99.1 9.5 64 25-88 102-166 (196)
147 3md3_A Nuclear and cytoplasmic 99.7 1.7E-17 5.9E-22 98.4 7.4 61 28-89 1-62 (166)
148 1x4g_A Nucleolysin TIAR; struc 99.7 2.6E-17 8.8E-22 92.8 7.7 60 24-89 22-82 (109)
149 3beg_B Splicing factor, argini 99.7 1.1E-17 3.8E-22 95.4 6.1 58 25-89 14-72 (115)
150 1fjc_A Nucleolin RBD2, protein 99.7 1E-17 3.6E-22 92.4 5.8 62 23-89 12-74 (96)
151 1b7f_A Protein (SXL-lethal pro 99.7 1E-16 3.5E-21 95.4 10.5 66 24-89 86-152 (168)
152 2kvi_A Nuclear polyadenylated 99.7 3.4E-17 1.2E-21 90.5 7.8 59 23-89 6-66 (96)
153 2hvz_A Splicing factor, argini 99.7 1.3E-17 4.4E-22 92.8 6.1 57 28-89 1-58 (101)
154 2qfj_A FBP-interacting repress 99.7 5.9E-17 2E-21 99.9 9.6 65 25-89 123-188 (216)
155 1fxl_A Paraneoplastic encephal 99.7 8.2E-17 2.8E-21 95.5 9.6 65 25-89 86-151 (167)
156 1sjr_A Polypyrimidine tract-bi 99.7 5.7E-17 2E-21 97.6 8.8 62 24-89 43-105 (164)
157 2e5g_A U6 snRNA-specific termi 99.7 1.5E-16 5.1E-21 87.5 9.5 59 25-89 6-65 (94)
158 1wf1_A RNA-binding protein RAL 99.7 5.9E-17 2E-21 91.5 8.0 58 24-89 24-83 (110)
159 3egn_A RNA-binding protein 40; 99.7 3.8E-18 1.3E-22 100.4 2.9 67 23-89 41-113 (143)
160 2yh0_A Splicing factor U2AF 65 99.7 7.9E-17 2.7E-21 98.2 8.8 65 25-89 112-177 (198)
161 2cpd_A Apobec-1 stimulating pr 99.7 2.2E-16 7.6E-21 87.5 9.6 59 23-89 11-72 (99)
162 2dgu_A Heterogeneous nuclear r 99.7 9.4E-17 3.2E-21 89.7 8.1 57 25-89 9-66 (103)
163 2dgt_A RNA-binding protein 30; 99.7 1.5E-16 5E-21 87.2 8.5 59 23-89 6-65 (92)
164 1whx_A Hypothetical protein ri 99.7 6.6E-17 2.2E-21 91.7 7.0 58 26-89 9-67 (111)
165 1wf0_A TDP-43, TAR DNA-binding 99.7 3.4E-17 1.2E-21 89.1 5.3 57 25-86 3-60 (88)
166 2dnp_A RNA-binding protein 14; 99.7 1.5E-16 5.2E-21 86.8 7.8 58 24-89 6-64 (90)
167 3zzy_A Polypyrimidine tract-bi 99.7 2.1E-16 7.3E-21 92.0 8.7 60 25-89 26-87 (130)
168 2cqh_A IGF-II mRNA-binding pro 99.7 4.4E-17 1.5E-21 89.4 5.5 59 24-89 5-65 (93)
169 2cjk_A Nuclear polyadenylated 99.7 7.3E-17 2.5E-21 96.0 6.8 60 27-86 87-147 (167)
170 2e44_A Insulin-like growth fac 99.7 1.4E-16 4.7E-21 87.8 7.3 62 24-89 12-75 (96)
171 3tyt_A Heterogeneous nuclear r 99.7 1.3E-16 4.4E-21 99.0 7.9 59 26-89 3-63 (205)
172 2e5i_A Heterogeneous nuclear r 99.7 4.6E-16 1.6E-20 90.0 9.6 57 27-89 25-83 (124)
173 4f02_A Polyadenylate-binding p 99.7 2.1E-16 7.3E-21 98.1 8.6 61 27-89 103-164 (213)
174 1wg1_A KIAA1579 protein, homol 99.7 1.1E-16 3.7E-21 87.2 6.4 57 26-89 4-61 (88)
175 1x5p_A Negative elongation fac 99.7 6.5E-16 2.2E-20 85.4 9.1 59 23-89 11-70 (97)
176 2hzc_A Splicing factor U2AF 65 99.7 3E-16 1E-20 84.9 7.2 58 25-89 4-73 (87)
177 3pgw_A U1-A; protein-RNA compl 99.7 4.6E-16 1.6E-20 99.6 9.0 63 24-89 6-73 (282)
178 3sde_A Paraspeckle component 1 99.6 7.6E-16 2.6E-20 98.1 8.8 63 26-89 95-158 (261)
179 3tyt_A Heterogeneous nuclear r 99.6 2.8E-16 9.4E-21 97.5 6.6 64 25-90 121-187 (205)
180 3smz_A Protein raver-1, ribonu 99.6 1.3E-15 4.4E-20 97.6 9.8 65 25-89 93-158 (284)
181 2adc_A Polypyrimidine tract-bi 99.6 4.8E-16 1.6E-20 97.4 7.5 66 19-89 26-93 (229)
182 3tht_A Alkylated DNA repair pr 99.6 7.2E-16 2.5E-20 102.1 6.9 60 24-89 15-77 (345)
183 3u1l_A PRE-mRNA-splicing facto 99.6 1.4E-15 4.8E-20 96.5 7.5 60 24-89 131-200 (240)
184 2pe8_A Splicing factor 45; RRM 99.6 6.5E-15 2.2E-19 82.9 8.9 65 25-89 6-77 (105)
185 2bz2_A Negative elongation fac 99.6 2.6E-15 8.7E-20 86.4 7.2 58 24-89 36-94 (121)
186 3smz_A Protein raver-1, ribonu 99.6 5.8E-15 2E-19 94.6 9.1 64 25-89 182-247 (284)
187 2ghp_A U4/U6 snRNA-associated 99.6 2.8E-15 9.4E-20 96.4 7.6 65 24-89 207-274 (292)
188 2diu_A KIAA0430 protein; struc 99.6 5.3E-15 1.8E-19 81.6 7.6 54 26-89 7-67 (96)
189 1fje_B Nucleolin RBD12, protei 99.6 4.7E-15 1.6E-19 88.9 8.0 62 23-89 95-157 (175)
190 2ghp_A U4/U6 snRNA-associated 99.6 6.7E-15 2.3E-19 94.6 8.1 64 23-89 37-101 (292)
191 3sde_A Paraspeckle component 1 99.6 8.2E-15 2.8E-19 93.4 8.4 61 23-89 18-79 (261)
192 1fje_B Nucleolin RBD12, protei 99.6 3.5E-16 1.2E-20 93.9 1.4 65 23-89 9-74 (175)
193 3pgw_A U1-A; protein-RNA compl 99.6 1.7E-14 5.9E-19 92.3 9.0 60 25-89 205-265 (282)
194 1qm9_A Polypyrimidine tract-bi 99.6 3.5E-15 1.2E-19 91.2 5.3 58 27-89 3-62 (198)
195 1qm9_A Polypyrimidine tract-bi 99.5 8.1E-14 2.8E-18 85.1 7.2 60 25-89 118-179 (198)
196 2g4b_A Splicing factor U2AF 65 99.5 9.9E-14 3.4E-18 82.7 7.3 57 26-89 3-71 (172)
197 1jmt_A Splicing factor U2AF 35 99.5 1.4E-14 4.6E-19 81.4 3.1 57 32-89 20-89 (104)
198 2adc_A Polypyrimidine tract-bi 99.5 1.6E-13 5.5E-18 85.9 7.9 60 25-89 149-210 (229)
199 2dit_A HIV TAT specific factor 99.5 7.9E-13 2.7E-17 74.8 9.3 63 23-89 11-85 (112)
200 2yh0_A Splicing factor U2AF 65 99.4 2.4E-13 8.3E-18 82.6 6.7 57 26-89 3-71 (198)
201 3v4m_A Splicing factor U2AF 65 99.4 5.1E-13 1.7E-17 75.1 6.6 64 26-89 4-80 (105)
202 2d9o_A DNAJ (HSP40) homolog, s 99.4 3.6E-12 1.2E-16 71.1 9.8 48 37-89 27-75 (100)
203 3ue2_A Poly(U)-binding-splicin 99.4 1.5E-12 5.1E-17 74.6 7.5 64 26-89 19-92 (118)
204 1owx_A Lupus LA protein, SS-B, 99.3 3.2E-12 1.1E-16 73.4 6.2 61 23-89 14-77 (121)
205 3s6e_A RNA-binding protein 39; 99.1 1.6E-10 5.6E-15 65.7 5.1 60 26-89 6-76 (114)
206 3dxb_A Thioredoxin N-terminall 98.9 7.5E-09 2.6E-13 64.3 7.1 51 39-89 141-196 (222)
207 2dnr_A Synaptojanin-1; RRM dom 98.7 7.5E-08 2.6E-12 52.5 6.3 56 25-89 5-69 (91)
208 1ufw_A Synaptojanin 2; RNP dom 98.5 2.1E-07 7.2E-12 51.1 4.2 56 25-89 13-78 (95)
209 1whv_A Poly(A)-specific ribonu 97.9 0.00014 4.7E-09 40.1 7.3 52 28-88 17-69 (100)
210 2l9w_A U4/U6 snRNA-associated- 97.7 0.00024 8.2E-09 40.0 6.9 58 26-89 20-83 (117)
211 3ctr_A Poly(A)-specific ribonu 97.6 0.00018 6.3E-09 39.6 5.5 51 29-88 8-59 (101)
212 3pq1_A Poly(A) RNA polymerase; 97.3 0.0002 6.7E-09 49.3 3.5 56 27-88 53-109 (464)
213 2dhx_A Poly (ADP-ribose) polym 96.9 0.011 3.6E-07 32.8 7.7 55 25-87 6-66 (104)
214 2kn4_A Immunoglobulin G-bindin 96.9 0.0015 5E-08 38.1 4.1 32 56-89 2-34 (158)
215 1uw4_A UPF3X; nonsense mediate 96.8 0.017 5.7E-07 31.3 7.7 59 28-86 2-63 (91)
216 1wwh_A Nucleoporin 35, nucleop 95.6 0.091 3.1E-06 29.8 6.7 56 25-87 22-78 (119)
217 3d45_A Poly(A)-specific ribonu 95.3 0.11 3.9E-06 36.0 7.8 54 27-89 440-494 (507)
218 4f25_A Polyadenylate-binding p 94.1 0.0096 3.3E-07 32.9 0.2 19 25-43 95-113 (115)
219 2l08_A Regulator of nonsense t 93.0 0.25 8.6E-06 26.9 4.6 57 27-83 9-68 (97)
220 1wey_A Calcipressin 1; structu 89.8 1.1 3.8E-05 24.7 5.1 55 28-88 6-66 (104)
221 3p3d_A Nucleoporin 53; structu 69.6 6.5 0.00022 22.5 3.5 59 28-87 8-81 (132)
222 2g1d_A 30S ribosomal protein S 64.9 5.8 0.0002 21.5 2.5 46 37-83 29-79 (98)
223 3mfb_A Uncharacterized protein 64.3 19 0.00065 21.2 4.9 37 39-75 3-42 (157)
224 3ts2_A Protein LIN-28 homolog 63.0 1.7 6E-05 25.2 0.2 26 43-76 3-28 (148)
225 1xn9_A 30S ribosomal protein S 61.6 17 0.0006 19.7 4.9 43 37-80 28-75 (101)
226 3fut_A Dimethyladenosine trans 60.6 8.6 0.00029 24.4 3.2 34 28-62 111-144 (271)
227 3ulj_A LIN28B, DNA-binding pro 57.2 10 0.00034 20.1 2.6 8 68-75 19-26 (90)
228 3uzu_A Ribosomal RNA small sub 56.2 3.9 0.00013 26.1 1.0 34 29-62 116-149 (279)
229 2k5n_A Putative cold-shock pro 55.1 12 0.00041 19.0 2.6 9 68-76 13-21 (74)
230 2kcm_A Cold shock domain famil 52.3 14 0.00048 18.7 2.6 9 68-76 11-19 (74)
231 1c9o_A CSPB, cold-shock protei 51.7 15 0.00051 18.0 2.6 9 68-76 12-20 (66)
232 3cam_A Cold-shock domain famil 51.6 15 0.00051 18.1 2.6 9 68-76 12-20 (67)
233 3a0j_A Cold shock protein; OB- 50.7 15 0.00053 18.4 2.6 9 68-76 12-20 (73)
234 2i9x_A Putative septation prot 50.4 27 0.00092 18.4 3.8 25 53-77 5-29 (87)
235 1h95_A CSD, Y-box binding prot 49.8 16 0.00054 18.7 2.6 9 68-76 19-27 (79)
236 3tqs_A Ribosomal RNA small sub 48.9 4.2 0.00014 25.5 0.3 33 30-62 99-131 (255)
237 2ia9_A Putative septation prot 47.9 32 0.0011 18.6 3.8 25 53-77 5-29 (100)
238 3h7h_B Transcription elongatio 47.4 29 0.001 18.8 3.6 21 68-88 50-71 (106)
239 1g6p_A Cold shock protein TMCS 47.3 19 0.00065 17.6 2.6 9 68-76 11-19 (66)
240 2i9z_A Putative septation prot 46.9 34 0.0012 18.7 3.8 25 53-77 5-29 (105)
241 1qyr_A KSGA, high level kasuga 45.2 25 0.00085 21.9 3.4 30 29-58 92-121 (252)
242 1ywx_A 30S ribosomal protein S 45.1 37 0.0012 18.5 4.9 44 37-80 28-76 (102)
243 3i2z_B RNA chaperone, negative 44.9 22 0.00074 17.7 2.6 9 68-76 16-24 (71)
244 3ftd_A Dimethyladenosine trans 44.8 20 0.00068 22.2 3.0 30 29-58 97-126 (249)
245 1i4w_A Mitochondrial replicati 43.0 14 0.00049 24.4 2.1 22 29-50 144-165 (353)
246 2v94_A RPS24, 30S ribosomal pr 41.6 43 0.0015 18.3 5.3 45 37-81 37-86 (107)
247 3aqq_A Calcium-regulated heat 41.3 23 0.00078 20.6 2.6 9 68-76 73-81 (147)
248 2yty_A Cold shock domain-conta 36.2 15 0.00051 19.3 1.2 8 69-76 28-35 (88)
249 2ytx_A Cold shock domain-conta 35.6 15 0.00052 19.6 1.2 9 68-76 27-35 (97)
250 1eij_A Hypothetical protein MT 35.4 29 0.00099 18.0 2.2 19 33-51 50-68 (80)
251 1wfq_A UNR protein; beta-barre 34.8 16 0.00055 19.2 1.2 8 69-76 28-35 (89)
252 2ytv_A Cold shock domain-conta 33.6 15 0.00052 18.8 0.9 7 69-75 18-24 (79)
253 4a8j_B Elongator complex prote 33.4 96 0.0033 19.9 5.8 46 29-74 168-221 (270)
254 2lss_A Cold shock-like protein 37.6 10 0.00034 19.0 0.0 8 68-75 15-22 (70)
255 2xzm_P RPS24E; ribosome, trans 29.9 86 0.0029 18.3 4.9 44 37-80 31-79 (149)
256 1x65_A UNR protein; cell-free 29.7 13 0.00045 19.6 0.3 8 69-76 18-25 (89)
257 2jsh_A Appetite-regulating hor 29.7 22 0.00077 14.4 0.9 22 34-55 2-23 (26)
258 2fh0_A Hypothetical 16.0 kDa p 28.9 36 0.0012 17.7 1.9 19 33-51 48-66 (81)
259 2lfv_A Protein DAMX; cell divi 34.1 12 0.00043 20.4 0.0 53 34-88 29-84 (106)
260 1ik9_C DNA ligase IV; DNA END 27.1 47 0.0016 14.4 2.1 16 36-51 19-34 (37)
261 4aj5_1 SKA3, spindle and kinet 25.2 29 0.00099 18.9 1.1 11 42-52 91-101 (101)
262 3u5c_Y RP50, 40S ribosomal pro 24.8 1E+02 0.0036 17.6 6.4 44 37-80 33-81 (135)
263 2exu_A Transcription initiatio 24.7 55 0.0019 20.0 2.4 21 68-88 148-169 (200)
264 3pc6_A DNA repair protein XRCC 24.2 92 0.0031 16.7 3.6 28 27-54 10-37 (104)
265 2cru_A Programmed cell death p 20.9 59 0.002 18.1 1.9 20 33-52 80-99 (118)
No 1
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.89 E-value=1.3e-22 Score=113.48 Aligned_cols=66 Identities=30% Similarity=0.390 Sum_probs=61.0
Q ss_pred CCCCceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCcceEEEEEe-CHHHHHHHHhhcC
Q psy11978 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAA-FLKIARAAIEPQK 89 (91)
Q Consensus 24 ~~~~~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~afv~~-~~~~a~~Ai~~~n 89 (91)
..++++|||+|||+++|+++|+++|++||.|.++.+++++.+|+++|||||+| +.++|++||+.+|
T Consensus 16 ~~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~ln 82 (99)
T 4fxv_A 16 YFQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLN 82 (99)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHT
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhC
Confidence 34467899999999999999999999999999999999999999999999998 5699999999876
No 2
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.88 E-value=4e-22 Score=113.38 Aligned_cols=65 Identities=15% Similarity=0.171 Sum_probs=60.7
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCcceEEEEEe-CHHHHHHHHhhcC
Q psy11978 25 PDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAA-FLKIARAAIEPQK 89 (91)
Q Consensus 25 ~~~~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~afv~~-~~~~a~~Ai~~~n 89 (91)
++.++|||+|||+.+++++|+++|++||.|.++.|++++.||+++|||||+| +.++|++||+.+|
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~ln 69 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLH 69 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHT
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhC
Confidence 4457999999999999999999999999999999999999999999999998 5599999999887
No 3
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.85 E-value=7.5e-22 Score=109.73 Aligned_cols=65 Identities=20% Similarity=0.227 Sum_probs=58.7
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHhhcCCC--eeEEEEeecCCCCCcceEEEEEeCH-HHHHHHHhhcC
Q psy11978 25 PDFIKMFVGQIPRSMDEADLTKMFSEYGR--VYNINVLRDKVTGQSKGKIFEAAFL-KIARAAIEPQK 89 (91)
Q Consensus 25 ~~~~~l~V~~L~~~~t~~~l~~~f~~~G~--i~~~~~~~~~~tg~~~g~afv~~~~-~~a~~Ai~~~n 89 (91)
..-.+|||+|||+++|+++|+++|++||. +.+|++++|+.||+++|||||+|.. ++|++||+.+|
T Consensus 7 ~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~ln 74 (95)
T 2lkz_A 7 HHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQ 74 (95)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHH
T ss_pred CccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhc
Confidence 34458999999999999999999999995 6789999999999999999999854 99999999876
No 4
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.85 E-value=1.1e-20 Score=105.11 Aligned_cols=68 Identities=24% Similarity=0.292 Sum_probs=62.0
Q ss_pred CCCCCCceEEEcCCCCCCcHHHHHHHhhcCCCeeE--------EEEeecCCCCCcceEEEEEe-CHHHHHHHHhhcC
Q psy11978 22 QPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYN--------INVLRDKVTGQSKGKIFEAA-FLKIARAAIEPQK 89 (91)
Q Consensus 22 ~~~~~~~~l~V~~L~~~~t~~~l~~~f~~~G~i~~--------~~~~~~~~tg~~~g~afv~~-~~~~a~~Ai~~~n 89 (91)
.+....++|||+|||+++++++|+++|++||.|.. +.++.++.+|+++|||||+| +.++|++||+.+|
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~ 84 (99)
T 2la6_A 8 HSHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFD 84 (99)
T ss_dssp CSCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHT
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhC
Confidence 44566789999999999999999999999999999 99999998999999999998 5589999999876
No 5
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.85 E-value=4e-21 Score=107.91 Aligned_cols=69 Identities=41% Similarity=0.675 Sum_probs=62.7
Q ss_pred CCCCCCCceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCcceEEEEEe-CHHHHHHHHhhcC
Q psy11978 21 EQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAA-FLKIARAAIEPQK 89 (91)
Q Consensus 21 ~~~~~~~~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~afv~~-~~~~a~~Ai~~~n 89 (91)
.....+.++|||+|||+.+++++|+++|++||.|..|.++.++.+|+++|||||+| +.++|++||+++|
T Consensus 7 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~ 76 (106)
T 2dgp_A 7 GMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALH 76 (106)
T ss_dssp SCCCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHT
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhc
Confidence 34456678999999999999999999999999999999999998999999999998 5599999999876
No 6
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=4.4e-21 Score=103.94 Aligned_cols=65 Identities=22% Similarity=0.337 Sum_probs=60.2
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCcceEEEEEe-CHHHHHHHHhhcC
Q psy11978 25 PDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAA-FLKIARAAIEPQK 89 (91)
Q Consensus 25 ~~~~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~afv~~-~~~~a~~Ai~~~n 89 (91)
.+.++|||+|||+++++++|+++|++||.|..+.++.++.+|.++|||||+| +.++|++|++.+|
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~ 68 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALK 68 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHH
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhc
Confidence 4567999999999999999999999999999999999998999999999998 5589999998765
No 7
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.85 E-value=7e-22 Score=108.87 Aligned_cols=62 Identities=23% Similarity=0.392 Sum_probs=57.7
Q ss_pred ceEEEcCCCCCCcHHHHHHHhhcCC-CeeEEEEeecCCCCCcceEEEEEe-CHHHHHHHHhhcC
Q psy11978 28 IKMFVGQIPRSMDEADLTKMFSEYG-RVYNINVLRDKVTGQSKGKIFEAA-FLKIARAAIEPQK 89 (91)
Q Consensus 28 ~~l~V~~L~~~~t~~~l~~~f~~~G-~i~~~~~~~~~~tg~~~g~afv~~-~~~~a~~Ai~~~n 89 (91)
.+|||+|||+++|+++|+++|++|| .|.+|++++++.+|.++|||||+| +.++|++||++++
T Consensus 2 ~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~ 65 (91)
T 2lxi_A 2 NIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQ 65 (91)
T ss_dssp CEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTT
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcC
Confidence 5899999999999999999999999 899999999999999999999998 5599999998753
No 8
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=1.1e-20 Score=106.04 Aligned_cols=68 Identities=31% Similarity=0.376 Sum_probs=62.0
Q ss_pred CCCCCCceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCcceEEEEEe-CHHHHHHHHhhcC
Q psy11978 22 QPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAA-FLKIARAAIEPQK 89 (91)
Q Consensus 22 ~~~~~~~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~afv~~-~~~~a~~Ai~~~n 89 (91)
....+.++|||+|||+++++++|+++|+.||.|..|.++.++.+|.++|||||+| +.++|++|++.+|
T Consensus 18 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~ 86 (106)
T 1p27_B 18 QRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLN 86 (106)
T ss_dssp CCBTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHT
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhc
Confidence 3445668999999999999999999999999999999999998999999999998 5589999999876
No 9
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.85 E-value=1e-20 Score=102.87 Aligned_cols=66 Identities=26% Similarity=0.390 Sum_probs=59.9
Q ss_pred CCCCCceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCcceEEEEEeC-HHHHHHHHhhc
Q psy11978 23 PDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAAF-LKIARAAIEPQ 88 (91)
Q Consensus 23 ~~~~~~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~afv~~~-~~~a~~Ai~~~ 88 (91)
...+.++|||+|||+++++++|+++|++||.|..+.++.++.+|+++|||||+|. .++|++|++..
T Consensus 7 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~ 73 (87)
T 3s7r_A 7 NEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQK 73 (87)
T ss_dssp CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHSS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHhC
Confidence 3455679999999999999999999999999999999999989999999999984 58999999763
No 10
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.85 E-value=1.1e-20 Score=102.69 Aligned_cols=66 Identities=27% Similarity=0.401 Sum_probs=59.5
Q ss_pred CCCCceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCcceEEEEEe-CHHHHHHHHhhcC
Q psy11978 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAA-FLKIARAAIEPQK 89 (91)
Q Consensus 24 ~~~~~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~afv~~-~~~~a~~Ai~~~n 89 (91)
..+.++|||+|||+++++++|+++|++||.|.++.++.++.+|.++|||||+| +.++|++|++.+|
T Consensus 3 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~ 69 (87)
T 3bs9_A 3 LGSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMG 69 (87)
T ss_dssp ---CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHT
T ss_pred CCCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcC
Confidence 34567999999999999999999999999999999999988999999999998 5599999999876
No 11
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=1.2e-20 Score=105.78 Aligned_cols=68 Identities=26% Similarity=0.299 Sum_probs=62.1
Q ss_pred CCCCCCceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCcceEEEEEe-CHHHHHHHHhhcC
Q psy11978 22 QPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAA-FLKIARAAIEPQK 89 (91)
Q Consensus 22 ~~~~~~~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~afv~~-~~~~a~~Ai~~~n 89 (91)
......++|||+|||+++++++|+++|++||.|..|.++.++.++.++|||||+| +.++|++||+.+|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~ 78 (105)
T 1x5u_A 10 SERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMD 78 (105)
T ss_dssp CCCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSS
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhC
Confidence 3445567999999999999999999999999999999999998999999999998 5599999999876
No 12
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.85 E-value=1.2e-20 Score=104.81 Aligned_cols=66 Identities=20% Similarity=0.375 Sum_probs=61.0
Q ss_pred CCCCceEEEcCCCCCCcHHHHHHHhhcCCCee-EEEEeecCCCCCcceEEEEEe-CHHHHHHHHhhcC
Q psy11978 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVY-NINVLRDKVTGQSKGKIFEAA-FLKIARAAIEPQK 89 (91)
Q Consensus 24 ~~~~~~l~V~~L~~~~t~~~l~~~f~~~G~i~-~~~~~~~~~tg~~~g~afv~~-~~~~a~~Ai~~~n 89 (91)
....++|||+|||+++++++|+++|++||.|. .+.++.++.++.++|||||+| +.++|++|++.+|
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~ 73 (99)
T 2div_A 6 SGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKIN 73 (99)
T ss_dssp CSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTT
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHc
Confidence 44567999999999999999999999999999 999999999999999999998 5589999999876
No 13
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.85 E-value=1.4e-20 Score=106.33 Aligned_cols=67 Identities=16% Similarity=0.253 Sum_probs=61.7
Q ss_pred CCCCCceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCcceEEEEEe-CHHHHHHHHhhcC
Q psy11978 23 PDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAA-FLKIARAAIEPQK 89 (91)
Q Consensus 23 ~~~~~~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~afv~~-~~~~a~~Ai~~~n 89 (91)
...+.++|||+|||+++++++|+++|++||.|..|.++.++.++.++|||||+| +.++|++||+.+|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~ 78 (111)
T 1x4h_A 11 DVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAAS 78 (111)
T ss_dssp CCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHC
T ss_pred cCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhc
Confidence 445567999999999999999999999999999999999998999999999998 5599999999886
No 14
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=1.5e-20 Score=105.12 Aligned_cols=68 Identities=29% Similarity=0.371 Sum_probs=62.2
Q ss_pred CCCCCCceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCcceEEEEEe-CHHHHHHHHhhcC
Q psy11978 22 QPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAA-FLKIARAAIEPQK 89 (91)
Q Consensus 22 ~~~~~~~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~afv~~-~~~~a~~Ai~~~n 89 (91)
....+.++|||+|||+++++++|+++|++||.|..|.++.++.++.++|||||+| +.++|++||+.+|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~ 78 (103)
T 2cq0_A 10 RRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVS 78 (103)
T ss_dssp CCCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTT
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcC
Confidence 3455678999999999999999999999999999999999988999999999998 5599999999876
No 15
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.85 E-value=2.9e-21 Score=105.94 Aligned_cols=62 Identities=19% Similarity=0.377 Sum_probs=57.2
Q ss_pred ceEEEcCCCCCCcHHHHHHHhhcCC--CeeEEEEeecCCCCCcceEEEEEe-CHHHHHHHHhhcC
Q psy11978 28 IKMFVGQIPRSMDEADLTKMFSEYG--RVYNINVLRDKVTGQSKGKIFEAA-FLKIARAAIEPQK 89 (91)
Q Consensus 28 ~~l~V~~L~~~~t~~~l~~~f~~~G--~i~~~~~~~~~~tg~~~g~afv~~-~~~~a~~Ai~~~n 89 (91)
.+|||+|||+++++++|+++|++|| .|.++.++.++.+|+++|||||+| +.++|++||+.+|
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~ 66 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLP 66 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGG
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcC
Confidence 4799999999999999999999999 999999999999999999999998 5699999998876
No 16
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.85 E-value=3e-20 Score=104.19 Aligned_cols=65 Identities=31% Similarity=0.428 Sum_probs=60.0
Q ss_pred CCCCceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCcceEEEEEe-CHHHHHHHHhhcC
Q psy11978 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAA-FLKIARAAIEPQK 89 (91)
Q Consensus 24 ~~~~~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~afv~~-~~~~a~~Ai~~~n 89 (91)
....++|||+|||+.+++++|+++|++||.|..|.++.++ +|.++|||||+| +.++|++||+.+|
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~ 77 (105)
T 2dnh_A 12 GGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALH 77 (105)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHc
Confidence 4456899999999999999999999999999999999998 899999999998 5599999999876
No 17
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.85 E-value=2.7e-20 Score=105.95 Aligned_cols=68 Identities=26% Similarity=0.441 Sum_probs=62.2
Q ss_pred CCCCCCceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCcceEEEEEe-CHHHHHHHHhhcC
Q psy11978 22 QPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAA-FLKIARAAIEPQK 89 (91)
Q Consensus 22 ~~~~~~~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~afv~~-~~~~a~~Ai~~~n 89 (91)
.+..+.++|||+|||+.+++++|+++|+.||.|..|.++.++.++.++|||||+| +.++|++||+.+|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~ 78 (115)
T 2dgo_A 10 KDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMG 78 (115)
T ss_dssp CCSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTT
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhC
Confidence 3455678999999999999999999999999999999999988999999999998 5599999999876
No 18
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.85 E-value=2.2e-21 Score=108.39 Aligned_cols=64 Identities=27% Similarity=0.366 Sum_probs=59.9
Q ss_pred CCceEEEcCCCC------CCcHHHHHHHhhcCCCeeEEEEeecCCCCCcceEEEEEe-CHHHHHHHHhhcC
Q psy11978 26 DFIKMFVGQIPR------SMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAA-FLKIARAAIEPQK 89 (91)
Q Consensus 26 ~~~~l~V~~L~~------~~t~~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~afv~~-~~~~a~~Ai~~~n 89 (91)
..++|||+|||+ .+++++|+++|++||.|.++.+++++.||+++|||||+| +.++|++||+.+|
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~ln 75 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFH 75 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHT
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhC
Confidence 357899999999 999999999999999999999999999999999999998 5599999999887
No 19
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.84 E-value=4.1e-21 Score=111.85 Aligned_cols=69 Identities=13% Similarity=0.150 Sum_probs=61.6
Q ss_pred CCCCCCceEEEcCCCCCCcHHHHHHHhhcCCCeeE--EEEeecCCCCCcceEEEEEeCHHHHHHHHhhcCC
Q psy11978 22 QPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYN--INVLRDKVTGQSKGKIFEAAFLKIARAAIEPQKA 90 (91)
Q Consensus 22 ~~~~~~~~l~V~~L~~~~t~~~l~~~f~~~G~i~~--~~~~~~~~tg~~~g~afv~~~~~~a~~Ai~~~n~ 90 (91)
......++|||+|||+++++++|+++|++||.|.. |+|++++.+|+++|||||+|...+|++||..+|-
T Consensus 18 ~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~~a~~Ai~~l~g 88 (131)
T 2m2b_A 18 SSENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTIEAAQLLQILQA 88 (131)
T ss_dssp CCSCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHHHHHHHHHHHTT
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCHHHHHHHHHhcC
Confidence 34455679999999999999999999999999966 9999999999999999999965599999998873
No 20
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=2.6e-20 Score=102.63 Aligned_cols=67 Identities=22% Similarity=0.253 Sum_probs=61.6
Q ss_pred CCCCCceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCcceEEEEEe-CHHHHHHHHhhcC
Q psy11978 23 PDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAA-FLKIARAAIEPQK 89 (91)
Q Consensus 23 ~~~~~~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~afv~~-~~~~a~~Ai~~~n 89 (91)
..++.++|||+|||+.+++++|+++|++||.|..+.++.++.++.++|||||+| +.++|++|++.+|
T Consensus 11 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~ 78 (95)
T 2cqc_A 11 NPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERAN 78 (95)
T ss_dssp SCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHT
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhC
Confidence 345567999999999999999999999999999999999998999999999998 5599999999876
No 21
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.84 E-value=1.8e-20 Score=106.74 Aligned_cols=68 Identities=29% Similarity=0.404 Sum_probs=61.9
Q ss_pred CCCCCCceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCcceEEEEEe-CHHHHHHHHhhcC
Q psy11978 22 QPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAA-FLKIARAAIEPQK 89 (91)
Q Consensus 22 ~~~~~~~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~afv~~-~~~~a~~Ai~~~n 89 (91)
...++.++|||+|||+++++++|+++|+.||.|..|.++.++.+++++|||||+| +.++|++||+.+|
T Consensus 20 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~ 88 (115)
T 2cpz_A 20 KEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMN 88 (115)
T ss_dssp CCCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHT
T ss_pred cCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcC
Confidence 3445567999999999999999999999999999999999998999999999998 5589999998876
No 22
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.84 E-value=2.1e-20 Score=103.08 Aligned_cols=65 Identities=29% Similarity=0.426 Sum_probs=60.4
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCcceEEEEEe-CHHHHHHHHhhcC
Q psy11978 25 PDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAA-FLKIARAAIEPQK 89 (91)
Q Consensus 25 ~~~~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~afv~~-~~~~a~~Ai~~~n 89 (91)
++.++|||+|||+++++++|+++|++||.|..+.++.++.+++++|||||+| +.++|++||+.+|
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~ 68 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLN 68 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHT
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhC
Confidence 4567999999999999999999999999999999999998999999999998 5699999999776
No 23
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.84 E-value=2.7e-20 Score=103.43 Aligned_cols=66 Identities=23% Similarity=0.359 Sum_probs=60.1
Q ss_pred CCCCCceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCcceEEEEEe-CHHHHHHHHhhcC
Q psy11978 23 PDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAA-FLKIARAAIEPQK 89 (91)
Q Consensus 23 ~~~~~~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~afv~~-~~~~a~~Ai~~~n 89 (91)
...+.++|||+|||+++++++|+++|++||.|..|.++.++.+++++|||||+| +.++|++||+ +|
T Consensus 6 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~ 72 (99)
T 2dgs_A 6 SGSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MH 72 (99)
T ss_dssp CCSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hC
Confidence 345567999999999999999999999999999999999998999999999998 5589999998 55
No 24
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.84 E-value=9e-21 Score=106.06 Aligned_cols=67 Identities=21% Similarity=0.286 Sum_probs=61.4
Q ss_pred CCCCCceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCcceEEEEEeCH-HHHHHHHhhcC
Q psy11978 23 PDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAAFL-KIARAAIEPQK 89 (91)
Q Consensus 23 ~~~~~~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~afv~~~~-~~a~~Ai~~~n 89 (91)
...+.++|||+|||+++++++|+++|++||.|..+.++.++.++.++|||||+|.. ++|++||+.+|
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~ 76 (103)
T 2dnm_A 9 DVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMD 76 (103)
T ss_dssp CCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHS
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcC
Confidence 44556799999999999999999999999999999999999899999999999854 89999999876
No 25
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=2.7e-20 Score=106.11 Aligned_cols=68 Identities=32% Similarity=0.493 Sum_probs=62.3
Q ss_pred CCCCCCceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCcceEEEEEe-CHHHHHHHHhhcC
Q psy11978 22 QPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAA-FLKIARAAIEPQK 89 (91)
Q Consensus 22 ~~~~~~~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~afv~~-~~~~a~~Ai~~~n 89 (91)
......++|||+|||+++++++|+++|++||.|..|.++.++.+++++|||||+| +.++|++||+.+|
T Consensus 12 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~ 80 (116)
T 2cqd_A 12 QKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPN 80 (116)
T ss_dssp CCSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSS
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCC
Confidence 3455678999999999999999999999999999999999998999999999998 5599999999876
No 26
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.84 E-value=1.4e-20 Score=101.84 Aligned_cols=66 Identities=23% Similarity=0.336 Sum_probs=60.8
Q ss_pred CCCCceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCcceEEEEEe-CHHHHHHHHhhcC
Q psy11978 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAA-FLKIARAAIEPQK 89 (91)
Q Consensus 24 ~~~~~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~afv~~-~~~~a~~Ai~~~n 89 (91)
..+.++|||+|||+++++++|+++|++||.|..+.++.++.++.++|||||+| +.++|++|++.+|
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~ 70 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMN 70 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHT
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhC
Confidence 44567999999999999999999999999999999999988999999999998 5599999998876
No 27
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=1.6e-20 Score=105.63 Aligned_cols=64 Identities=22% Similarity=0.324 Sum_probs=57.9
Q ss_pred CCCCceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCcceEEEEEe-CHHHHHHHHhhcC
Q psy11978 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAA-FLKIARAAIEPQK 89 (91)
Q Consensus 24 ~~~~~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~afv~~-~~~~a~~Ai~~~n 89 (91)
....++|||+|||+++|+++|+++|++||.|.+|.+++++. |.++|||||+| +.++|++||. +|
T Consensus 8 ~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~ 72 (103)
T 1s79_A 8 DVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TP 72 (103)
T ss_dssp CSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SS
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cC
Confidence 34457999999999999999999999999999999999986 99999999998 5589999998 44
No 28
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.84 E-value=2.1e-20 Score=103.79 Aligned_cols=66 Identities=27% Similarity=0.375 Sum_probs=61.0
Q ss_pred CCCCceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCcceEEEEEe-CHHHHHHHHhhcC
Q psy11978 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAA-FLKIARAAIEPQK 89 (91)
Q Consensus 24 ~~~~~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~afv~~-~~~~a~~Ai~~~n 89 (91)
..+.++|||+|||+++++++|+++|++||.|..+.++.++.++.++|||||+| +.++|++||+.+|
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~ 71 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVD 71 (99)
T ss_dssp CCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhC
Confidence 45567999999999999999999999999999999999998999999999998 5589999998876
No 29
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.84 E-value=2.8e-20 Score=102.37 Aligned_cols=67 Identities=28% Similarity=0.463 Sum_probs=61.5
Q ss_pred CCCCCceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCcceEEEEEe-CHHHHHHHHhhcC
Q psy11978 23 PDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAA-FLKIARAAIEPQK 89 (91)
Q Consensus 23 ~~~~~~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~afv~~-~~~~a~~Ai~~~n 89 (91)
..++.++|||+|||+++++++|+++|++||.|..+.++.++.++.++|||||+| +.++|++|++.+|
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~ 79 (94)
T 2e5h_A 12 LAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAIN 79 (94)
T ss_dssp CCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTT
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcC
Confidence 445567999999999999999999999999999999999998999999999998 5589999998876
No 30
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.84 E-value=4.6e-20 Score=102.66 Aligned_cols=67 Identities=18% Similarity=0.316 Sum_probs=61.0
Q ss_pred CCCCCCceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCcceEEEEEe-CHHHHHHHHhhcC
Q psy11978 22 QPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAA-FLKIARAAIEPQK 89 (91)
Q Consensus 22 ~~~~~~~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~afv~~-~~~~a~~Ai~~~n 89 (91)
....+.++|||+|||+.+++++|+++|++||.|..+.++.++ +|+++|||||+| +.++|++|++.+|
T Consensus 12 ~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~ 79 (100)
T 2do4_A 12 STSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMD 79 (100)
T ss_dssp SSCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHT
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhC
Confidence 345556799999999999999999999999999999999998 999999999998 5599999998876
No 31
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.84 E-value=3.3e-20 Score=99.93 Aligned_cols=62 Identities=24% Similarity=0.403 Sum_probs=58.5
Q ss_pred ceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCcceEEEEEe-CHHHHHHHHhhcC
Q psy11978 28 IKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAA-FLKIARAAIEPQK 89 (91)
Q Consensus 28 ~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~afv~~-~~~~a~~Ai~~~n 89 (91)
.+|||+|||+++++++|+++|++||.|.++.++.++.+|.++|||||+| +.++|++|++.+|
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~ 64 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQ 64 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHT
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhc
Confidence 5899999999999999999999999999999999988999999999998 5599999999876
No 32
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.84 E-value=1.9e-20 Score=112.17 Aligned_cols=64 Identities=17% Similarity=0.228 Sum_probs=59.1
Q ss_pred CCceEEEcCCCCCCcHHHHHHHhhcCC--CeeEEEEeecCCCCCcceEEEEEe-CHHHHHHHHhhcC
Q psy11978 26 DFIKMFVGQIPRSMDEADLTKMFSEYG--RVYNINVLRDKVTGQSKGKIFEAA-FLKIARAAIEPQK 89 (91)
Q Consensus 26 ~~~~l~V~~L~~~~t~~~l~~~f~~~G--~i~~~~~~~~~~tg~~~g~afv~~-~~~~a~~Ai~~~n 89 (91)
..++|||+|||+++++++|+++|+.|| .|..|.++.++.+|+++|||||+| +.++|++||+.+|
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~ln 120 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLP 120 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHST
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcC
Confidence 357999999999999999999999999 999999999999999999999998 5599999999876
No 33
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.84 E-value=1.5e-20 Score=106.49 Aligned_cols=67 Identities=22% Similarity=0.317 Sum_probs=58.3
Q ss_pred CCCCCceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCcceEEEEEe-CHHHHHHHHhhcC
Q psy11978 23 PDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAA-FLKIARAAIEPQK 89 (91)
Q Consensus 23 ~~~~~~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~afv~~-~~~~a~~Ai~~~n 89 (91)
...+.++|||+|||+++++++|+++|+.||.|..|.++.++.+|.++|||||+| +.++|++||+.+|
T Consensus 21 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~ 88 (109)
T 2rs2_A 21 MGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR 88 (109)
T ss_dssp -----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSSC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHCC
Confidence 445567999999999999999999999999999999999998999999999998 5589999998754
No 34
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.84 E-value=2.2e-20 Score=105.58 Aligned_cols=69 Identities=30% Similarity=0.347 Sum_probs=62.5
Q ss_pred CCCCCCCceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCcceEEEEEe-CHHHHHHHHhhcC
Q psy11978 21 EQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAA-FLKIARAAIEPQK 89 (91)
Q Consensus 21 ~~~~~~~~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~afv~~-~~~~a~~Ai~~~n 89 (91)
.....+.++|||+|||+.+++++|+++|++||.|..+.++.++.+|.++|||||+| +.++|++||..+|
T Consensus 20 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~ 89 (110)
T 1oo0_B 20 PQRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALN 89 (110)
T ss_dssp BCCBTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHT
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcC
Confidence 33456678999999999999999999999999999999999998999999999998 5589999999876
No 35
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.84 E-value=3e-20 Score=106.13 Aligned_cols=67 Identities=27% Similarity=0.377 Sum_probs=61.6
Q ss_pred CCCCCceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCcceEEEEEe-CHHHHHHHHhhcC
Q psy11978 23 PDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAA-FLKIARAAIEPQK 89 (91)
Q Consensus 23 ~~~~~~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~afv~~-~~~~a~~Ai~~~n 89 (91)
..++.++|||+|||+++++++|+++|++||.|..+.++.++.+|+++|||||+| +.++|++||+.+|
T Consensus 36 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~ 103 (118)
T 2khc_A 36 EGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMN 103 (118)
T ss_dssp CCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcC
Confidence 455668999999999999999999999999999999999988999999999998 5599999999876
No 36
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.83 E-value=4.6e-20 Score=104.37 Aligned_cols=67 Identities=27% Similarity=0.427 Sum_probs=61.5
Q ss_pred CCCCCceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCcceEEEEEe-CHHHHHHHHhhcC
Q psy11978 23 PDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAA-FLKIARAAIEPQK 89 (91)
Q Consensus 23 ~~~~~~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~afv~~-~~~~a~~Ai~~~n 89 (91)
..++.++|||+|||+.+++++|+++|++||.|..+.++.++.+|.++|||||+| +.++|++|++.+|
T Consensus 22 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~ 89 (108)
T 2jrs_A 22 GSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLN 89 (108)
T ss_dssp SCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHT
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcC
Confidence 455568999999999999999999999999999999999998999999999998 5699999998776
No 37
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=5.1e-20 Score=103.06 Aligned_cols=65 Identities=25% Similarity=0.281 Sum_probs=59.9
Q ss_pred CCCCceEEEcCCCCCCcHHHHHHHhhc-CCCeeEEEEeecCCCCCcceEEEEEe-CHHHHHHHHhhcC
Q psy11978 24 DPDFIKMFVGQIPRSMDEADLTKMFSE-YGRVYNINVLRDKVTGQSKGKIFEAA-FLKIARAAIEPQK 89 (91)
Q Consensus 24 ~~~~~~l~V~~L~~~~t~~~l~~~f~~-~G~i~~~~~~~~~~tg~~~g~afv~~-~~~~a~~Ai~~~n 89 (91)
....++|||+|||+++++++|+++|++ ||.|..+.++.++ +|.++|||||+| +.++|++||+.+|
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~ 72 (104)
T 2dhg_A 6 SGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQ 72 (104)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTT
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHcc
Confidence 445679999999999999999999999 9999999999999 999999999998 5589999999876
No 38
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=4e-20 Score=103.91 Aligned_cols=67 Identities=19% Similarity=0.324 Sum_probs=61.1
Q ss_pred CCCCCCceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeec-CCCCCcceEEEEEe-CHHHHHHHHhhc
Q psy11978 22 QPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRD-KVTGQSKGKIFEAA-FLKIARAAIEPQ 88 (91)
Q Consensus 22 ~~~~~~~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~~~~~-~~tg~~~g~afv~~-~~~~a~~Ai~~~ 88 (91)
......++|||+|||+.+++++|+++|++||.|..|.++.+ +.++.++|||||+| +.++|++||+.+
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l 78 (107)
T 2cph_A 10 PKKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNAL 78 (107)
T ss_dssp CCSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHH
T ss_pred ccCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHh
Confidence 34556679999999999999999999999999999999999 78999999999998 559999999987
No 39
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.83 E-value=2.5e-20 Score=115.86 Aligned_cols=67 Identities=27% Similarity=0.367 Sum_probs=59.7
Q ss_pred CCCCCceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCcceEEEEEe-CHHHHHHHHhhcC
Q psy11978 23 PDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAA-FLKIARAAIEPQK 89 (91)
Q Consensus 23 ~~~~~~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~afv~~-~~~~a~~Ai~~~n 89 (91)
+..+.++|||+|||+++++++|+++|++||.|.+|+|++++.+|+++|||||+| +.++|++||+.+|
T Consensus 11 p~~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~ 78 (213)
T 4f02_A 11 PSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMN 78 (213)
T ss_dssp ----CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHT
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhh
Confidence 445567999999999999999999999999999999999999999999999998 5599999999876
No 40
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.83 E-value=3.2e-20 Score=102.71 Aligned_cols=63 Identities=27% Similarity=0.394 Sum_probs=59.1
Q ss_pred CceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCcceEEEEEe-CHHHHHHHHhhcC
Q psy11978 27 FIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAA-FLKIARAAIEPQK 89 (91)
Q Consensus 27 ~~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~afv~~-~~~~a~~Ai~~~n 89 (91)
.++|||+|||+++++++|+++|++||.|.++.++.++.+|.++|||||+| +.++|++|++.+|
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~ 65 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLN 65 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHT
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhC
Confidence 46899999999999999999999999999999999998999999999998 5599999998876
No 41
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.83 E-value=2.8e-20 Score=106.19 Aligned_cols=61 Identities=28% Similarity=0.388 Sum_probs=55.6
Q ss_pred CceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCcceEEEEEe-CHHHHHHHHhhcC
Q psy11978 27 FIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAA-FLKIARAAIEPQK 89 (91)
Q Consensus 27 ~~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~afv~~-~~~~a~~Ai~~~n 89 (91)
..+|||+|||+++++++|+++|++||.|.+|+|++++ +.++|||||+| +.++|++||+++|
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~ 66 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMN 66 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHT
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcC
Confidence 4589999999999999999999999999999999986 45899999998 5599999999876
No 42
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.83 E-value=1.1e-19 Score=101.68 Aligned_cols=66 Identities=20% Similarity=0.359 Sum_probs=59.6
Q ss_pred CCCCCCceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCcceEEEEEe-CHHHHHHHHhhcC
Q psy11978 22 QPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAA-FLKIARAAIEPQK 89 (91)
Q Consensus 22 ~~~~~~~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~afv~~-~~~~a~~Ai~~~n 89 (91)
.+..+.++|||+|||+++++++|+++|++|| |..|.++.++.+++++|||||+| +.++|++|| .+|
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~ 76 (103)
T 2dng_A 10 LPTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYD 76 (103)
T ss_dssp CCSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGT
T ss_pred CCCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhC
Confidence 3455668999999999999999999999997 99999999999999999999998 558999999 666
No 43
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=4.2e-20 Score=103.09 Aligned_cols=67 Identities=28% Similarity=0.429 Sum_probs=61.3
Q ss_pred CCCCCceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCcceEEEEEe-CHHHHHHHHhhcC
Q psy11978 23 PDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAA-FLKIARAAIEPQK 89 (91)
Q Consensus 23 ~~~~~~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~afv~~-~~~~a~~Ai~~~n 89 (91)
...+.++|||+|||+++++++|+++|++||.|..+.++.++.++.++|||||+| +.++|++||+.+|
T Consensus 8 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~ 75 (102)
T 1x5s_A 8 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMN 75 (102)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHT
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhC
Confidence 345567999999999999999999999999999999999998999999999998 5599999998876
No 44
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=2.6e-20 Score=102.89 Aligned_cols=65 Identities=31% Similarity=0.473 Sum_probs=60.1
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHhhcCCCeeEE-EEeecCCCCCcceEEEEEe-CHHHHHHHHhhcC
Q psy11978 25 PDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNI-NVLRDKVTGQSKGKIFEAA-FLKIARAAIEPQK 89 (91)
Q Consensus 25 ~~~~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~-~~~~~~~tg~~~g~afv~~-~~~~a~~Ai~~~n 89 (91)
.+.++|||+|||+++++++|+++|++||.|..+ .++.++.++.++|||||+| +.++|++||+.+|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~ 69 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMN 69 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcC
Confidence 346799999999999999999999999999999 9999988999999999998 5599999999876
No 45
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.83 E-value=5.6e-20 Score=107.00 Aligned_cols=67 Identities=22% Similarity=0.253 Sum_probs=61.6
Q ss_pred CCCCCceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCcceEEEEEe-CHHHHHHHHhhcC
Q psy11978 23 PDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAA-FLKIARAAIEPQK 89 (91)
Q Consensus 23 ~~~~~~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~afv~~-~~~~a~~Ai~~~n 89 (91)
..++.++|||+|||+++++++|+++|++||.|..|.++.++.+|+++|||||+| +.++|++||+.+|
T Consensus 42 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~ln 109 (129)
T 2kxn_B 42 NPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERAN 109 (129)
T ss_dssp CCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHT
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhC
Confidence 445567999999999999999999999999999999999998999999999998 5599999999876
No 46
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=3.9e-20 Score=102.57 Aligned_cols=65 Identities=20% Similarity=0.194 Sum_probs=59.1
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCC---CCCcceEEEEEe-CHHHHHHHHhhcC
Q psy11978 25 PDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKV---TGQSKGKIFEAA-FLKIARAAIEPQK 89 (91)
Q Consensus 25 ~~~~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~~~~~~~---tg~~~g~afv~~-~~~~a~~Ai~~~n 89 (91)
.+.++|||+|||+++++++|+++|++||.|..+.++.++. ++.++|||||+| +.++|++||+.+|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~ 71 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQ 71 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHST
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhC
Confidence 4567999999999999999999999999999999999876 669999999998 5599999999876
No 47
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=2.8e-20 Score=103.82 Aligned_cols=66 Identities=23% Similarity=0.336 Sum_probs=60.8
Q ss_pred CCCCceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCcceEEEEEe-CHHHHHHHHhhcC
Q psy11978 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAA-FLKIARAAIEPQK 89 (91)
Q Consensus 24 ~~~~~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~afv~~-~~~~a~~Ai~~~n 89 (91)
..+.++|||+|||+.+++++|+++|++||.|..+.++.++.+++++|||||+| +.++|++||+.+|
T Consensus 9 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~ 75 (102)
T 2cqb_A 9 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMN 75 (102)
T ss_dssp CCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhC
Confidence 44567999999999999999999999999999999999988999999999998 5599999998876
No 48
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=1.1e-19 Score=103.19 Aligned_cols=66 Identities=29% Similarity=0.518 Sum_probs=60.7
Q ss_pred CCCCCceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCcceEEEEEe-CHHHHHHHHhhcC
Q psy11978 23 PDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAA-FLKIARAAIEPQK 89 (91)
Q Consensus 23 ~~~~~~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~afv~~-~~~~a~~Ai~~~n 89 (91)
...+.++|||+|||+.+++++|+++|+.||.|..+.++.++ +|.++|||||+| +.++|++||+.+|
T Consensus 21 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~ 87 (114)
T 1x5o_A 21 QEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFN 87 (114)
T ss_dssp CCCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHB
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhC
Confidence 44566899999999999999999999999999999999999 999999999998 5589999999876
No 49
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.83 E-value=7e-20 Score=107.23 Aligned_cols=67 Identities=27% Similarity=0.393 Sum_probs=61.5
Q ss_pred CCCCCceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCcceEEEEEe-CHHHHHHHHhhcC
Q psy11978 23 PDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAA-FLKIARAAIEPQK 89 (91)
Q Consensus 23 ~~~~~~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~afv~~-~~~~a~~Ai~~~n 89 (91)
.....++|||+|||+++++++|+++|+.||.|.+|.++.++.+|+++|||||+| +.++|++||+++|
T Consensus 38 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~ 105 (139)
T 1u6f_A 38 EPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLN 105 (139)
T ss_dssp CTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTT
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhC
Confidence 345567999999999999999999999999999999999998999999999998 5599999999876
No 50
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.83 E-value=5e-20 Score=106.29 Aligned_cols=68 Identities=31% Similarity=0.376 Sum_probs=62.1
Q ss_pred CCCCCCceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCcceEEEEEe-CHHHHHHHHhhcC
Q psy11978 22 QPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAA-FLKIARAAIEPQK 89 (91)
Q Consensus 22 ~~~~~~~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~afv~~-~~~~a~~Ai~~~n 89 (91)
....+.++|||+|||+.+++++|+++|++||.|..|.++.++.++.++|||||+| +.++|++||+.+|
T Consensus 17 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~ 85 (126)
T 3ex7_B 17 QRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLN 85 (126)
T ss_dssp CCCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHT
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhC
Confidence 3455678999999999999999999999999999999999998999999999998 5599999999876
No 51
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=7.4e-20 Score=102.54 Aligned_cols=66 Identities=17% Similarity=0.296 Sum_probs=59.4
Q ss_pred CCCCCCceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCC-CCcceEEEEEe-CHHHHHHHHhhcC
Q psy11978 22 QPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVT-GQSKGKIFEAA-FLKIARAAIEPQK 89 (91)
Q Consensus 22 ~~~~~~~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~~~~~~~t-g~~~g~afv~~-~~~~a~~Ai~~~n 89 (91)
.+....++|||+|||+.+++++|+++|+.|| |..|.++.++.+ |+++|||||+| +.++|++|| .+|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~ 77 (104)
T 1wi8_A 10 LPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLN 77 (104)
T ss_dssp CCSSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGG
T ss_pred CCCCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcC
Confidence 3445568999999999999999999999999 999999999987 99999999998 558999999 765
No 52
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=5.8e-20 Score=103.07 Aligned_cols=66 Identities=27% Similarity=0.398 Sum_probs=60.3
Q ss_pred CCCCCCceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCcceEEEEEeC-HHHHHHHHhh
Q psy11978 22 QPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAAF-LKIARAAIEP 87 (91)
Q Consensus 22 ~~~~~~~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~afv~~~-~~~a~~Ai~~ 87 (91)
....+.++|||+|||+++++++|+++|++||.|..|.++.++.++.++|||||+|. .++|++||+.
T Consensus 11 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~ 77 (105)
T 2dh8_A 11 SGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 77 (105)
T ss_dssp CCSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh
Confidence 34556689999999999999999999999999999999999989999999999985 4899999986
No 53
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=1.2e-19 Score=101.43 Aligned_cols=65 Identities=23% Similarity=0.383 Sum_probs=59.2
Q ss_pred CCCCCceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCcceEEEEEe-CHHHHHHHHhhcC
Q psy11978 23 PDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAA-FLKIARAAIEPQK 89 (91)
Q Consensus 23 ~~~~~~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~afv~~-~~~~a~~Ai~~~n 89 (91)
...+.++|||+|||+.+++++|+++|++||.|..|.++.+ ++.++|||||+| +.++|++||+.+|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~ 76 (103)
T 2d9p_A 11 TRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMN 76 (103)
T ss_dssp CCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHT
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhC
Confidence 4456679999999999999999999999999999999998 899999999998 5599999999876
No 54
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.82 E-value=1.1e-19 Score=102.14 Aligned_cols=67 Identities=21% Similarity=0.234 Sum_probs=61.3
Q ss_pred CCCCCCceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCcceEEEEEe-CHHHHHHHHhhcC
Q psy11978 22 QPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAA-FLKIARAAIEPQK 89 (91)
Q Consensus 22 ~~~~~~~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~afv~~-~~~~a~~Ai~~~n 89 (91)
......++|||+|||+.+++++|+++|++||.|..+.++.++ +|+++|||||+| +.++|++||+.+|
T Consensus 24 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~ 91 (107)
T 3ulh_A 24 AGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYN 91 (107)
T ss_dssp CCCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHT
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhC
Confidence 345567899999999999999999999999999999999999 999999999998 5599999999876
No 55
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=1.6e-19 Score=100.89 Aligned_cols=65 Identities=26% Similarity=0.319 Sum_probs=59.4
Q ss_pred CCCCCceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCcceEEEEEe-CHHHHHHHHhh
Q psy11978 23 PDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAA-FLKIARAAIEP 87 (91)
Q Consensus 23 ~~~~~~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~afv~~-~~~~a~~Ai~~ 87 (91)
...+.++|||+|||+++++++|+++|++||.|..|.++.++.+|+++|||||+| +.++|++||+.
T Consensus 11 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~ 76 (103)
T 2cqg_A 11 AVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQ 76 (103)
T ss_dssp CCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHS
T ss_pred ccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHHc
Confidence 345567899999999999999999999999999999999998999999999998 55899999984
No 56
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=6.4e-20 Score=104.07 Aligned_cols=68 Identities=29% Similarity=0.337 Sum_probs=61.5
Q ss_pred CCCCCCceEEEcCCCCCCcHHHHHHHhhcCCCee--------EEEEeecCCCCCcceEEEEEe-CHHHHHHHHhhcC
Q psy11978 22 QPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVY--------NINVLRDKVTGQSKGKIFEAA-FLKIARAAIEPQK 89 (91)
Q Consensus 22 ~~~~~~~~l~V~~L~~~~t~~~l~~~f~~~G~i~--------~~~~~~~~~tg~~~g~afv~~-~~~~a~~Ai~~~n 89 (91)
....+.++|||+|||+++++++|+++|++||.|. .|.++.++.+|+++|||||+| +.++|++||+.+|
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~ 86 (113)
T 2cpe_A 10 DEDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFD 86 (113)
T ss_dssp CCCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHT
T ss_pred ccCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcC
Confidence 3455678999999999999999999999999998 699999988999999999998 5599999999876
No 57
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.82 E-value=7.2e-20 Score=100.90 Aligned_cols=66 Identities=20% Similarity=0.261 Sum_probs=59.9
Q ss_pred CCCCCceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCcceEEEEEeC-HHHHHHHHhhcC
Q psy11978 23 PDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAAF-LKIARAAIEPQK 89 (91)
Q Consensus 23 ~~~~~~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~afv~~~-~~~a~~Ai~~~n 89 (91)
.....++|||+|||+.+++++|+++|++||.|..+.++.++ +|+++|||||+|. .++|++|++.+|
T Consensus 12 ~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~ 78 (95)
T 2ywk_A 12 QEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDR-EGKPKSFGFVCFKHPESVSYAIALLN 78 (95)
T ss_dssp CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSTHHHHHHHHHHT
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCCceEEEEEECCHHHHHHHHHHhC
Confidence 34556799999999999999999999999999999999998 4999999999984 599999999876
No 58
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.82 E-value=7.7e-20 Score=104.61 Aligned_cols=65 Identities=23% Similarity=0.346 Sum_probs=59.8
Q ss_pred CCCCceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCcceEEEEEe-CHHHHHHHHhhcC
Q psy11978 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAA-FLKIARAAIEPQK 89 (91)
Q Consensus 24 ~~~~~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~afv~~-~~~~a~~Ai~~~n 89 (91)
..+.++|||+|||+++++++|+++|++||.|..|.++.++ +|+++|||||+| +.++|++||+.+|
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~ 69 (116)
T 2fy1_A 4 ADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMN 69 (116)
T ss_dssp TCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhC
Confidence 3445799999999999999999999999999999999998 999999999998 5599999999876
No 59
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=3.1e-19 Score=101.27 Aligned_cols=66 Identities=24% Similarity=0.183 Sum_probs=60.1
Q ss_pred CCCCCceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCcceEEEEEe-CHHHHHHHHhhcC
Q psy11978 23 PDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAA-FLKIARAAIEPQK 89 (91)
Q Consensus 23 ~~~~~~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~afv~~-~~~~a~~Ai~~~n 89 (91)
.....++|||+|||+++++++|+++|++||.|..|.++.++ +++++|||||+| +.++|++||+.+|
T Consensus 11 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~ 77 (114)
T 2do0_A 11 AGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFN 77 (114)
T ss_dssp CCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHT
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhC
Confidence 44556799999999999999999999999999999999998 799999999998 5589999999876
No 60
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.82 E-value=7.3e-20 Score=98.48 Aligned_cols=60 Identities=23% Similarity=0.300 Sum_probs=54.6
Q ss_pred ceEEEcCCCCCC------cHHHHHHHhhcCCCeeEEEEeecCCCCCcceEEEEEe-CHHHHHHHHhhcC
Q psy11978 28 IKMFVGQIPRSM------DEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAA-FLKIARAAIEPQK 89 (91)
Q Consensus 28 ~~l~V~~L~~~~------t~~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~afv~~-~~~~a~~Ai~~~n 89 (91)
++|||+|||+.+ ++++|+++|++||.|..+.++ +.+|+++|||||+| +.++|++||+++|
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~ln 68 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNAD 68 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSS
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhc
Confidence 589999999999 789999999999999999987 45899999999998 5589999999877
No 61
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.82 E-value=2e-19 Score=107.19 Aligned_cols=66 Identities=20% Similarity=0.187 Sum_probs=61.2
Q ss_pred CCCCceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCcceEEEEEe-CHHHHHHHHhhcC
Q psy11978 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAA-FLKIARAAIEPQK 89 (91)
Q Consensus 24 ~~~~~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~afv~~-~~~~a~~Ai~~~n 89 (91)
..+.++|||+|||+++++++|+++|++||.|..|.|+.++.++.++|||||+| +.++|++||+.+|
T Consensus 36 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~ 102 (156)
T 1h2v_Z 36 LKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYIN 102 (156)
T ss_dssp TTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhC
Confidence 34568999999999999999999999999999999999999999999999998 5599999999876
No 62
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=2.9e-20 Score=103.98 Aligned_cols=64 Identities=31% Similarity=0.444 Sum_probs=59.7
Q ss_pred CCceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCcceEEEEEe-CHHHHHHHHhhcC
Q psy11978 26 DFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAA-FLKIARAAIEPQK 89 (91)
Q Consensus 26 ~~~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~afv~~-~~~~a~~Ai~~~n 89 (91)
..++|||+|||+.+++++|+++|+.||.|..+.++.++.+|.++|||||+| +.++|++|++.+|
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~ 71 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLN 71 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSS
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhC
Confidence 457899999999999999999999999999999999998999999999998 5699999998876
No 63
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=3.2e-20 Score=105.54 Aligned_cols=63 Identities=24% Similarity=0.385 Sum_probs=58.3
Q ss_pred CCceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCcceEEEEEeC-HHHHHHHHhhcC
Q psy11978 26 DFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAAF-LKIARAAIEPQK 89 (91)
Q Consensus 26 ~~~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~afv~~~-~~~a~~Ai~~~n 89 (91)
..++|||+|||+++++++|+++|+.||.|..|.++.++.+|.++|||||+|. .++|++|| .+|
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~ 87 (114)
T 2cq4_A 24 DARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLT 87 (114)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcC
Confidence 3578999999999999999999999999999999999989999999999984 58999999 765
No 64
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=2.1e-20 Score=99.47 Aligned_cols=62 Identities=24% Similarity=0.378 Sum_probs=57.9
Q ss_pred ceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCcceEEEEEe-CHHHHHHHHhhcC
Q psy11978 28 IKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAA-FLKIARAAIEPQK 89 (91)
Q Consensus 28 ~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~afv~~-~~~~a~~Ai~~~n 89 (91)
++|||+|||+++++++|+++|++||.|..+.++.++.+|+++|||||+| +.++|++|++.+|
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~ 63 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR 63 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC
Confidence 4799999999999999999999999999999999998999999999998 4589999999776
No 65
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=9.5e-20 Score=102.81 Aligned_cols=60 Identities=15% Similarity=0.241 Sum_probs=53.5
Q ss_pred CCCCceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCcceEEEEEe-CHHHHHHHHhhcC
Q psy11978 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAA-FLKIARAAIEPQK 89 (91)
Q Consensus 24 ~~~~~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~afv~~-~~~~a~~Ai~~~n 89 (91)
+.+.++|||+|||+.+++++|+++|++||.|.+|.++++ +|||||+| +.++|++||+.+|
T Consensus 13 ~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~ 73 (105)
T 1sjq_A 13 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYT 73 (105)
T ss_dssp CCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhc
Confidence 345679999999999999999999999999999999875 69999999 5589999999764
No 66
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.81 E-value=2e-19 Score=108.20 Aligned_cols=67 Identities=30% Similarity=0.346 Sum_probs=61.0
Q ss_pred CCCCCceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCcceEEEEEe-CHHHHHHHHhhcC
Q psy11978 23 PDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAA-FLKIARAAIEPQK 89 (91)
Q Consensus 23 ~~~~~~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~afv~~-~~~~a~~Ai~~~n 89 (91)
...+.++|||+|||+.+++++|+++|++||.|..|.|+.++.+|.++|||||+| +.++|++||+++|
T Consensus 68 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~ 135 (165)
T 1rk8_A 68 RSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALN 135 (165)
T ss_dssp CCC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHT
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhC
Confidence 345567899999999999999999999999999999999998999999999998 5589999999876
No 67
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=7.7e-20 Score=101.35 Aligned_cols=66 Identities=18% Similarity=0.193 Sum_probs=60.1
Q ss_pred CCCCceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCcceEEEEEe-CHHHHHHHHhhcC
Q psy11978 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAA-FLKIARAAIEPQK 89 (91)
Q Consensus 24 ~~~~~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~afv~~-~~~~a~~Ai~~~n 89 (91)
.+..++|||+|||+++++++|+++|++||.|..+.++.++.+|+++|||||+| +.++|++||+.+|
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~ 78 (98)
T 2cqp_A 12 KPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLN 78 (98)
T ss_dssp CCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhC
Confidence 44557899999999999999999999999999888888888999999999998 5599999999876
No 68
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=2e-19 Score=100.98 Aligned_cols=64 Identities=20% Similarity=0.253 Sum_probs=57.4
Q ss_pred CCCCCceEEEcCCCCCCcHHHHHHHhhcCCCeeE-EEEeecCCCCCcceEEEEEe-CHHHHHHHHhh
Q psy11978 23 PDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYN-INVLRDKVTGQSKGKIFEAA-FLKIARAAIEP 87 (91)
Q Consensus 23 ~~~~~~~l~V~~L~~~~t~~~l~~~f~~~G~i~~-~~~~~~~~tg~~~g~afv~~-~~~~a~~Ai~~ 87 (91)
+....++|||+|||+++++++|+++|+.||.|.. +.|+.+ .+|+++|||||+| +.++|++||+.
T Consensus 11 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~ 76 (104)
T 1wg5_A 11 DTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK 76 (104)
T ss_dssp SCSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh
Confidence 3455679999999999999999999999999987 888888 5999999999998 55899999986
No 69
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.81 E-value=2.2e-19 Score=104.93 Aligned_cols=67 Identities=22% Similarity=0.333 Sum_probs=61.5
Q ss_pred CCCCCceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCcceEEEEEe-CHHHHHHHHhhcC
Q psy11978 23 PDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAA-FLKIARAAIEPQK 89 (91)
Q Consensus 23 ~~~~~~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~afv~~-~~~~a~~Ai~~~n 89 (91)
...+.++|||+|||+.+++++|+++|++||.|..+.++.++.+|+++|||||+| +.++|++|++.+|
T Consensus 59 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~ 126 (140)
T 2ku7_A 59 SATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMN 126 (140)
T ss_dssp SCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHST
T ss_pred CCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhC
Confidence 445568999999999999999999999999999999999988999999999998 5599999998876
No 70
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.81 E-value=1.8e-19 Score=98.15 Aligned_cols=62 Identities=21% Similarity=0.367 Sum_probs=57.7
Q ss_pred CceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCcceEEEEEeC-HHHHHHHHhhcC
Q psy11978 27 FIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAAF-LKIARAAIEPQK 89 (91)
Q Consensus 27 ~~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~afv~~~-~~~a~~Ai~~~n 89 (91)
.++|||+|||+++++++|+++|++||.|..+.++.++.+++++|||||+|. .++|++|+ .+|
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~ 68 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALD 68 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcC
Confidence 468999999999999999999999999999999999989999999999985 48999999 665
No 71
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.81 E-value=4.2e-19 Score=97.25 Aligned_cols=65 Identities=22% Similarity=0.247 Sum_probs=58.3
Q ss_pred CCCCCceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCcceEEEEEe-CHHHHHHHHhhcC
Q psy11978 23 PDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAA-FLKIARAAIEPQK 89 (91)
Q Consensus 23 ~~~~~~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~afv~~-~~~~a~~Ai~~~n 89 (91)
+..+.++|||+|||+++++++|+++|++||.|..+.++.+ +|+++|||||+| +.++|++||+.+|
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~ 69 (92)
T 2dgv_A 4 GSSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMN 69 (92)
T ss_dssp SSSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHT
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhC
Confidence 3455679999999999999999999999999999999874 789999999998 5589999999876
No 72
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.4e-19 Score=102.05 Aligned_cols=66 Identities=15% Similarity=0.219 Sum_probs=60.0
Q ss_pred CCCCceEEEcCCCCCCcHHHHHHHhhcCCC-eeEEEEe-ecCCCCCcceEEEEEe-CHHHHHHHHhhcC
Q psy11978 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGR-VYNINVL-RDKVTGQSKGKIFEAA-FLKIARAAIEPQK 89 (91)
Q Consensus 24 ~~~~~~l~V~~L~~~~t~~~l~~~f~~~G~-i~~~~~~-~~~~tg~~~g~afv~~-~~~~a~~Ai~~~n 89 (91)
+.+.++|||+|||+++++++|+++|+.||. |..+.++ .++.+|.++|||||+| +.++|++||+.+|
T Consensus 5 s~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~ 73 (109)
T 2dis_A 5 SSGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLM 73 (109)
T ss_dssp CCCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTT
T ss_pred ccCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhh
Confidence 345679999999999999999999999998 9999998 8888899999999998 5589999999885
No 73
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.81 E-value=1.1e-19 Score=98.75 Aligned_cols=64 Identities=20% Similarity=0.385 Sum_probs=58.5
Q ss_pred CCceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCC-cceEEEEEe-CHHHHHHHHhhcC
Q psy11978 26 DFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQ-SKGKIFEAA-FLKIARAAIEPQK 89 (91)
Q Consensus 26 ~~~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~~~~~~~tg~-~~g~afv~~-~~~~a~~Ai~~~n 89 (91)
..++|||+|||+++++++|+++|++||.|..+.++.++.++. ++|||||+| +.++|++|++.+|
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~ 68 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMD 68 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcC
Confidence 456899999999999999999999999999999999987766 999999998 5599999999876
No 74
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.81 E-value=7.8e-20 Score=96.89 Aligned_cols=60 Identities=25% Similarity=0.391 Sum_probs=55.5
Q ss_pred eEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCcceEEEEEe-CHHHHHHHHhhcC
Q psy11978 29 KMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAA-FLKIARAAIEPQK 89 (91)
Q Consensus 29 ~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~afv~~-~~~~a~~Ai~~~n 89 (91)
+|||+|||+++++++|+++|++||.|..+.++.++.+|+++|||||+| +.++|++|++ +|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~ 61 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IH 61 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SS
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CC
Confidence 589999999999999999999999999999999998999999999998 5588999987 44
No 75
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.81 E-value=6.2e-20 Score=101.16 Aligned_cols=65 Identities=18% Similarity=0.195 Sum_probs=58.6
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCcceEEEEEe-CHHHHHHHHhhcC
Q psy11978 25 PDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAA-FLKIARAAIEPQK 89 (91)
Q Consensus 25 ~~~~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~afv~~-~~~~a~~Ai~~~n 89 (91)
+..++|||+|||+++++++|+++|++||.|..+.++.++.+|+++|||||+| +.++|++||+++|
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~ 78 (95)
T 2ek1_A 13 PGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLN 78 (95)
T ss_dssp --CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhC
Confidence 3457999999999999999999999999999899999888999999999998 5589999999876
No 76
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=7.9e-19 Score=98.08 Aligned_cols=66 Identities=23% Similarity=0.362 Sum_probs=58.3
Q ss_pred CCCCCCceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCcceEEEEEe-CHHHHHHHHhhcC
Q psy11978 22 QPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAA-FLKIARAAIEPQK 89 (91)
Q Consensus 22 ~~~~~~~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~afv~~-~~~~a~~Ai~~~n 89 (91)
....+.++|||+|||+++++++|+++|++||.|..|.++.++. .++|||||+| +.++|++||+.+|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~ 76 (103)
T 2cq3_A 10 ESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLH 76 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHT
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhC
Confidence 3455568999999999999999999999999999999999873 3899999998 5599999999876
No 77
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.80 E-value=6.3e-20 Score=102.35 Aligned_cols=65 Identities=17% Similarity=0.300 Sum_probs=56.1
Q ss_pred CCCCCceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecC-CCCCcceEEEEEe-CHHHHHHHHhhcC
Q psy11978 23 PDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDK-VTGQSKGKIFEAA-FLKIARAAIEPQK 89 (91)
Q Consensus 23 ~~~~~~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~~~~~~-~tg~~~g~afv~~-~~~~a~~Ai~~~n 89 (91)
.....++|||+|||+++++++|+++|+.|| |..+.++.++ .+|+++|||||+| +.++|++|| .+|
T Consensus 15 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~ 81 (100)
T 2j76_E 15 PKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLN 81 (100)
T ss_dssp -----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTT
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcC
Confidence 455568999999999999999999999999 9999999998 6899999999998 558999999 665
No 78
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.80 E-value=1.2e-19 Score=114.41 Aligned_cols=64 Identities=19% Similarity=0.339 Sum_probs=58.8
Q ss_pred CCceEEEcCCCCCCcHHHHHHHhhcCC--CeeEEEEeecCCCCCcceEEEEEeC-HHHHHHHHhhcC
Q psy11978 26 DFIKMFVGQIPRSMDEADLTKMFSEYG--RVYNINVLRDKVTGQSKGKIFEAAF-LKIARAAIEPQK 89 (91)
Q Consensus 26 ~~~~l~V~~L~~~~t~~~l~~~f~~~G--~i~~~~~~~~~~tg~~~g~afv~~~-~~~a~~Ai~~~n 89 (91)
..++|||+|||+++++++|+++|++|| .|.+|.|++++.+|+++|||||+|. .++|++||+.+|
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~ln 133 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLP 133 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTST
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcC
Confidence 456899999999999999999999999 9999999999999999999999995 489999999887
No 79
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.80 E-value=2.6e-19 Score=106.70 Aligned_cols=66 Identities=23% Similarity=0.340 Sum_probs=60.8
Q ss_pred CCCCceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCcceEEEEEe-CHHHHHHHHhhcC
Q psy11978 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAA-FLKIARAAIEPQK 89 (91)
Q Consensus 24 ~~~~~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~afv~~-~~~~a~~Ai~~~n 89 (91)
....++|||+|||+++++++|+++|+.||.|..+.++.++.+|.++|||||+| +.++|++||+.+|
T Consensus 67 ~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~ 133 (158)
T 2kn4_A 67 VEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMD 133 (158)
T ss_dssp CCBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHST
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhC
Confidence 34467999999999999999999999999999999999988999999999998 5599999999876
No 80
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=5.5e-19 Score=98.72 Aligned_cols=65 Identities=18% Similarity=0.292 Sum_probs=57.8
Q ss_pred CCCCCceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCcceEEEEEe-CHHHHHHHHhhcC
Q psy11978 23 PDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAA-FLKIARAAIEPQK 89 (91)
Q Consensus 23 ~~~~~~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~afv~~-~~~~a~~Ai~~~n 89 (91)
.....++|||+|||+.+++++|+++|++||.|..|.++.++.+ ++|||||+| +.++|++||+.+|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~--~~g~afV~f~~~~~a~~A~~~l~ 76 (103)
T 2cqi_A 11 DDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS--NDPYCFVEFYEHRDAAAALAAMN 76 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCS--SCCEEEEEESSHHHHHHHHHHHT
T ss_pred CCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCC--CCCEEEEEECCHHHHHHHHHHhC
Confidence 4455679999999999999999999999999999999998633 689999998 5599999999876
No 81
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=9e-20 Score=103.96 Aligned_cols=62 Identities=24% Similarity=0.447 Sum_probs=57.8
Q ss_pred CCceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCcceEEEEEe-CHHHHHHHHhh
Q psy11978 26 DFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAA-FLKIARAAIEP 87 (91)
Q Consensus 26 ~~~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~afv~~-~~~~a~~Ai~~ 87 (91)
+.++|||+|||+++++++|+++|+.||.|..|.++.++.++.++|||||+| +.++|++||+.
T Consensus 26 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~ 88 (116)
T 1x4b_A 26 QFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA 88 (116)
T ss_dssp HHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh
Confidence 347899999999999999999999999999999999998999999999998 55899999986
No 82
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.80 E-value=9.7e-20 Score=103.77 Aligned_cols=63 Identities=24% Similarity=0.339 Sum_probs=56.8
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCC---CCcceEEEEEe-CHHHHHHHHhhc
Q psy11978 25 PDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVT---GQSKGKIFEAA-FLKIARAAIEPQ 88 (91)
Q Consensus 25 ~~~~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~~~~~~~t---g~~~g~afv~~-~~~~a~~Ai~~~ 88 (91)
...++|||+|||+++++++|+++|++||.|. +.++.+..+ |+++|||||+| +.++|++||+++
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~ 72 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDAC 72 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHS
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhh
Confidence 4467999999999999999999999999999 888888767 79999999998 558999999876
No 83
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.80 E-value=2e-19 Score=101.16 Aligned_cols=64 Identities=23% Similarity=0.258 Sum_probs=56.7
Q ss_pred CCCCceEEEcCCCCCC------cHHHHHHHhhcCCCeeEEEEeecCCCCCcceEEEEEeCH-HHHHHHHhhcC
Q psy11978 24 DPDFIKMFVGQIPRSM------DEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAAFL-KIARAAIEPQK 89 (91)
Q Consensus 24 ~~~~~~l~V~~L~~~~------t~~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~afv~~~~-~~a~~Ai~~~n 89 (91)
....++|||+|||+.+ ++++|+++|++||.|..+.++ +.+|+++|||||+|.. ++|++||..+|
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~ 82 (105)
T 2nlw_A 12 DGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNAD 82 (105)
T ss_dssp CSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCS
T ss_pred CCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhC
Confidence 3445789999999999 789999999999999999988 3589999999999854 89999999876
No 84
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.80 E-value=1.9e-19 Score=105.73 Aligned_cols=65 Identities=12% Similarity=0.201 Sum_probs=58.5
Q ss_pred CCCCCceEEEcCCCCCCcHHHHHHHhhcCCC---eeEEEEeecCCCCCcceEEEEEe-CHHHHHHHHhhcC
Q psy11978 23 PDPDFIKMFVGQIPRSMDEADLTKMFSEYGR---VYNINVLRDKVTGQSKGKIFEAA-FLKIARAAIEPQK 89 (91)
Q Consensus 23 ~~~~~~~l~V~~L~~~~t~~~l~~~f~~~G~---i~~~~~~~~~~tg~~~g~afv~~-~~~~a~~Ai~~~n 89 (91)
+..+.++|||+|||+++|+++|+++|+.||. |..|.+++++. |+++|||||+| +.++|++||+ +|
T Consensus 40 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~ 108 (136)
T 2hgl_A 40 EGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KD 108 (136)
T ss_dssp SCCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TT
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cC
Confidence 3455679999999999999999999999999 88999999985 99999999998 5589999998 65
No 85
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=2.5e-19 Score=102.05 Aligned_cols=63 Identities=19% Similarity=0.202 Sum_probs=57.7
Q ss_pred CCCCceEEEcCCCCCCcHHHHHHHhhcCCCe-eEEEEeecCCCCCcceEEEEEe-CHHHHHHHHhh
Q psy11978 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRV-YNINVLRDKVTGQSKGKIFEAA-FLKIARAAIEP 87 (91)
Q Consensus 24 ~~~~~~l~V~~L~~~~t~~~l~~~f~~~G~i-~~~~~~~~~~tg~~~g~afv~~-~~~~a~~Ai~~ 87 (91)
..+.++|||+|||+++++++|+++|+.||.| ..|.|+.++ +|+++|||||+| +.++|++||+.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~ 76 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL 76 (114)
T ss_dssp CSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG
T ss_pred CCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh
Confidence 4456789999999999999999999999999 889999999 999999999998 55899999976
No 86
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.80 E-value=6.6e-19 Score=101.43 Aligned_cols=66 Identities=23% Similarity=0.258 Sum_probs=60.4
Q ss_pred CCCCCceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCcceEEEEEe-CHHHHHHHHhhcC
Q psy11978 23 PDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAA-FLKIARAAIEPQK 89 (91)
Q Consensus 23 ~~~~~~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~afv~~-~~~~a~~Ai~~~n 89 (91)
.....++|||+|||+.+++++|+++|+.||.|..+.++.++ +|+++|||||+| +.++|++|++.+|
T Consensus 31 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~ 97 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYK 97 (124)
T ss_dssp CCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHT
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcC
Confidence 34556799999999999999999999999999999999999 999999999998 5589999999776
No 87
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.80 E-value=9.2e-20 Score=106.80 Aligned_cols=68 Identities=22% Similarity=0.326 Sum_probs=61.7
Q ss_pred CCCCCCceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCcceEEEEEe-CHHHHHHHHhhcC
Q psy11978 22 QPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAA-FLKIARAAIEPQK 89 (91)
Q Consensus 22 ~~~~~~~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~afv~~-~~~~a~~Ai~~~n 89 (91)
....+.++|||+|||+++++++|+++|+.||.|..|.++.++.+++++|||||+| +.++|++||+.+|
T Consensus 42 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~ 110 (135)
T 2lea_A 42 PDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMD 110 (135)
T ss_dssp SSGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTT
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcC
Confidence 3445567899999999999999999999999999999999988999999999998 5599999999876
No 88
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=2.9e-19 Score=100.24 Aligned_cols=61 Identities=16% Similarity=0.149 Sum_probs=55.0
Q ss_pred CCCCceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCcceEEEEEeC-HHHHHHHHh
Q psy11978 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAAF-LKIARAAIE 86 (91)
Q Consensus 24 ~~~~~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~afv~~~-~~~a~~Ai~ 86 (91)
....++|||+|||+++++++|+++|+.||. ..|.|+.++ +|+++|||||+|. .++|++||+
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~-~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~ 73 (102)
T 1wez_A 12 STTGHCVHMRGLPYRATENDIYNFFSPLNP-MRVHIEIGP-DGRVTGEADVEFATHEDAVAAMA 73 (102)
T ss_dssp CSSSCEEEEESCCTTCCHHHHHHSSCSCCC-SEEEEEESS-SSCEEEEEEEECSSSHHHHHHHT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCc-eEEEEEECC-CCCEeeEEEEEECCHHHHHHHHH
Confidence 445579999999999999999999999995 599999998 9999999999985 499999995
No 89
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=1.3e-19 Score=104.56 Aligned_cols=66 Identities=14% Similarity=0.167 Sum_probs=57.7
Q ss_pred CCCCCceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCcceEEEEEeCH-HHHHHHHhhcC
Q psy11978 23 PDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAAFL-KIARAAIEPQK 89 (91)
Q Consensus 23 ~~~~~~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~afv~~~~-~~a~~Ai~~~n 89 (91)
+..+.++|||+|||+++++++|+++|+.||.|..+.++.+..+|+++|||||+|.. ++|++||+ +|
T Consensus 21 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~ 87 (124)
T 1wel_A 21 PHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RH 87 (124)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hC
Confidence 44556799999999999999999999999999886666666699999999999854 89999998 65
No 90
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.79 E-value=4.4e-19 Score=101.70 Aligned_cols=64 Identities=14% Similarity=0.208 Sum_probs=57.8
Q ss_pred CCCCceEEEcCCCCCCcHHHHHHHhhcCCC---eeEEEEeecCCCCCcceEEEEEe-CHHHHHHHHhhcC
Q psy11978 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGR---VYNINVLRDKVTGQSKGKIFEAA-FLKIARAAIEPQK 89 (91)
Q Consensus 24 ~~~~~~l~V~~L~~~~t~~~l~~~f~~~G~---i~~~~~~~~~~tg~~~g~afv~~-~~~~a~~Ai~~~n 89 (91)
..+.++|||+|||+++++++|+++|+.||. |..|+++.++. |+++|||||+| +.++|++||+ +|
T Consensus 14 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~ 81 (118)
T 2db1_A 14 GGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KD 81 (118)
T ss_dssp BCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GT
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cC
Confidence 445678999999999999999999999999 89999999985 99999999998 5589999998 55
No 91
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=1.5e-18 Score=97.87 Aligned_cols=65 Identities=17% Similarity=0.311 Sum_probs=56.8
Q ss_pred CCCCCCceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCcceEEEEEe-CHHHHHHHHhhcC
Q psy11978 22 QPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAA-FLKIARAAIEPQK 89 (91)
Q Consensus 22 ~~~~~~~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~afv~~-~~~~a~~Ai~~~n 89 (91)
....+.++|||+|||+++++++|+++|++||.|..|.+..+ +.++|||||+| +.++|++||+.+|
T Consensus 17 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~ 82 (109)
T 1x4a_A 17 PAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR---RGGPPFAFVEFEDPRDAEDAVYGRD 82 (109)
T ss_dssp CCCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS---SSSSCCEEEEESCHHHHHHHHHHHT
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC---CCCCcEEEEEECCHHHHHHHHHHcC
Confidence 34556689999999999999999999999999999998554 45899999998 5699999998876
No 92
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.79 E-value=7.2e-20 Score=100.07 Aligned_cols=61 Identities=25% Similarity=0.456 Sum_probs=57.4
Q ss_pred ceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCcceEEEEEeCH-HHHHHHHhhcC
Q psy11978 28 IKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAAFL-KIARAAIEPQK 89 (91)
Q Consensus 28 ~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~afv~~~~-~~a~~Ai~~~n 89 (91)
++|||+|||+++++++|+++|++||.|.++.++.++.+|.++|||||+|.. + |++|+..+|
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~ 63 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLD 63 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSC
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhC
Confidence 589999999999999999999999999999999999899999999999965 6 999999876
No 93
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=4.5e-19 Score=102.05 Aligned_cols=61 Identities=15% Similarity=0.238 Sum_probs=54.1
Q ss_pred CCCCCceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCcceEEEEEe-CHHHHHHHHhhcC
Q psy11978 23 PDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAA-FLKIARAAIEPQK 89 (91)
Q Consensus 23 ~~~~~~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~afv~~-~~~~a~~Ai~~~n 89 (91)
..++.++|||+|||+.+++++|+++|++||.|.+|.++.+ +|||||+| +.++|++||+.+|
T Consensus 27 ~~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~ 88 (119)
T 2ad9_A 27 AGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYT 88 (119)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHH
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhc
Confidence 4455679999999999999999999999999999999875 69999998 5589999998764
No 94
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=5.7e-19 Score=97.79 Aligned_cols=63 Identities=16% Similarity=0.155 Sum_probs=56.8
Q ss_pred CCCCceEEEcCCCCCCcHHHHH----HHhhcCCCeeEEEEeecCCCCCcceEEEEEe-CHHHHHHHHhhcC
Q psy11978 24 DPDFIKMFVGQIPRSMDEADLT----KMFSEYGRVYNINVLRDKVTGQSKGKIFEAA-FLKIARAAIEPQK 89 (91)
Q Consensus 24 ~~~~~~l~V~~L~~~~t~~~l~----~~f~~~G~i~~~~~~~~~~tg~~~g~afv~~-~~~~a~~Ai~~~n 89 (91)
..+.++|||+|||+++++++|+ ++|++||.|.+|.++.++.+ +|||||+| +.++|++||+.+|
T Consensus 6 ~~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~ 73 (96)
T 2dgx_A 6 SGNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLH 73 (96)
T ss_dssp CSSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHT
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhC
Confidence 4456799999999999999999 99999999999999999855 89999998 5599999999876
No 95
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.79 E-value=5e-19 Score=101.80 Aligned_cols=62 Identities=26% Similarity=0.377 Sum_probs=57.7
Q ss_pred CceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCcceEEEEEe-CHHHHHHHHhhcC
Q psy11978 27 FIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAA-FLKIARAAIEPQK 89 (91)
Q Consensus 27 ~~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~afv~~-~~~~a~~Ai~~~n 89 (91)
.++|||+|||+++++++|+++|++||.|..|.++.++.+|.++|||||+| +.++|++|| .+|
T Consensus 36 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~ 98 (124)
T 2jwn_A 36 KRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMD 98 (124)
T ss_dssp HTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcC
Confidence 57899999999999999999999999999999999988999999999998 558999999 665
No 96
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.79 E-value=9.3e-19 Score=106.60 Aligned_cols=66 Identities=23% Similarity=0.379 Sum_probs=60.3
Q ss_pred CCCCCceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCcceEEEEEe-CHHHHHHHHhhc
Q psy11978 23 PDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAA-FLKIARAAIEPQ 88 (91)
Q Consensus 23 ~~~~~~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~afv~~-~~~~a~~Ai~~~ 88 (91)
...+.++|||+|||+++++++|+++|+.||.|.+|.++.++.+|.++|||||+| +.++|++||+..
T Consensus 9 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~ 75 (196)
T 1l3k_A 9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNAR 75 (196)
T ss_dssp CCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHTC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhcC
Confidence 345568999999999999999999999999999999999998999999999998 558999999863
No 97
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.79 E-value=1.2e-19 Score=96.10 Aligned_cols=60 Identities=23% Similarity=0.393 Sum_probs=56.0
Q ss_pred eEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCcceEEEEEeC-HHHHHHHHhhc
Q psy11978 29 KMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAAF-LKIARAAIEPQ 88 (91)
Q Consensus 29 ~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~afv~~~-~~~a~~Ai~~~ 88 (91)
+|||+|||+++++++|+++|++||.|..+.++.++.+|.++|||||+|. .++|++|++..
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~ 61 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKK 61 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTTS
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHhC
Confidence 5899999999999999999999999999999999989999999999985 48999999864
No 98
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=4.8e-19 Score=99.52 Aligned_cols=60 Identities=15% Similarity=0.113 Sum_probs=53.2
Q ss_pred CCCCceEEEcCCCC-CCcHHHHHHHhhcCCCeeEEEEeecCCCCCcceEEEEEe-CHHHHHHHHhhcC
Q psy11978 24 DPDFIKMFVGQIPR-SMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAA-FLKIARAAIEPQK 89 (91)
Q Consensus 24 ~~~~~~l~V~~L~~-~~t~~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~afv~~-~~~~a~~Ai~~~n 89 (91)
..+.++|||+|||+ .+++++|+++|++||.|.+|.++++ +|||||+| +.++|++||+.+|
T Consensus 12 ~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~ 73 (102)
T 1x4d_A 12 VETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK------INEAFIEMATTEDAQAAVDYYT 73 (102)
T ss_dssp CCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS------SSCEEEEESSHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHHc
Confidence 34567999999999 9999999999999999999999865 48999999 5589999999765
No 99
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=4.4e-19 Score=100.68 Aligned_cols=63 Identities=24% Similarity=0.338 Sum_probs=55.9
Q ss_pred CCCCceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCcceEEEEEe-CHHHHHHHHhhcC
Q psy11978 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAA-FLKIARAAIEPQK 89 (91)
Q Consensus 24 ~~~~~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~afv~~-~~~~a~~Ai~~~n 89 (91)
..+..+|||+|||+.+++++|+++|+.| .|.+|.|+.++ .|+++|||||+| +.++|++|| .+|
T Consensus 13 ~~~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al-~~~ 76 (109)
T 2dnn_A 13 NPDDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDH-VGRNNGNGLVKFLSPQDTFEAL-KRN 76 (109)
T ss_dssp CHHHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCT-TCCCCSEEEEECSSHHHHHHHH-HTT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECC-CCCCCeEEEEEECCHHHHHHHH-hcC
Confidence 3445789999999999999999999999 89999999998 599999999998 558999999 454
No 100
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=1.9e-18 Score=94.63 Aligned_cols=63 Identities=14% Similarity=0.252 Sum_probs=57.4
Q ss_pred CCCCceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCcceEEEEEe-CHHHHHHHHhhcC
Q psy11978 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAA-FLKIARAAIEPQK 89 (91)
Q Consensus 24 ~~~~~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~afv~~-~~~~a~~Ai~~~n 89 (91)
....++|||+|||+++++++|+++|+.| .|..+.++.+ .+|+++|||||+| +.++|++||+ +|
T Consensus 7 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~ 70 (91)
T 2dgw_A 7 GTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CN 70 (91)
T ss_dssp CCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SC
T ss_pred CCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hC
Confidence 4456799999999999999999999999 9999999999 5999999999998 5589999998 76
No 101
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.79 E-value=2.7e-19 Score=100.87 Aligned_cols=65 Identities=18% Similarity=0.241 Sum_probs=58.1
Q ss_pred CCCCCceEEEcCCCCCCcHHHHHHHhhcCCC---eeEEEEeecCCCCCcceEEEEEe-CHHHHHHHHhhcC
Q psy11978 23 PDPDFIKMFVGQIPRSMDEADLTKMFSEYGR---VYNINVLRDKVTGQSKGKIFEAA-FLKIARAAIEPQK 89 (91)
Q Consensus 23 ~~~~~~~l~V~~L~~~~t~~~l~~~f~~~G~---i~~~~~~~~~~tg~~~g~afv~~-~~~~a~~Ai~~~n 89 (91)
+....++|||+|||+++++++|+++|+.||. |..|.++.++. |+++|||||+| +.++|++||+ +|
T Consensus 7 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~ 75 (107)
T 2lmi_A 7 EVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KH 75 (107)
T ss_dssp CCSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TT
T ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hC
Confidence 3455679999999999999999999999988 89999999986 99999999998 5589999998 54
No 102
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=7.4e-19 Score=99.67 Aligned_cols=66 Identities=11% Similarity=0.159 Sum_probs=58.0
Q ss_pred CCCCceEEEcCCCCCCcHHHHH---HHhhcCCCeeEEEEeecCCCC---CcceEEEEEe-CHHHHHHHHhhcC
Q psy11978 24 DPDFIKMFVGQIPRSMDEADLT---KMFSEYGRVYNINVLRDKVTG---QSKGKIFEAA-FLKIARAAIEPQK 89 (91)
Q Consensus 24 ~~~~~~l~V~~L~~~~t~~~l~---~~f~~~G~i~~~~~~~~~~tg---~~~g~afv~~-~~~~a~~Ai~~~n 89 (91)
....++|||+|||+++++++|+ ++|++||.|..+.++.++.++ .++|||||+| +.++|++||+.+|
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~ln 84 (111)
T 2cpi_A 12 VVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVN 84 (111)
T ss_dssp CCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHT
T ss_pred ccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhC
Confidence 3445689999999999999999 999999999999999988654 5669999998 5599999999876
No 103
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1.2e-18 Score=97.70 Aligned_cols=60 Identities=17% Similarity=0.246 Sum_probs=52.8
Q ss_pred CCCCceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCcceEEEEEe-CHHHHHHHHhhcC
Q psy11978 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAA-FLKIARAAIEPQK 89 (91)
Q Consensus 24 ~~~~~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~afv~~-~~~~a~~Ai~~~n 89 (91)
.++.++|||+|||+.+++++|+++|++||.|.++.++.+ +|||||+| +.++|++|++.+|
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~ 72 (101)
T 2cq1_A 12 GAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYS 72 (101)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhc
Confidence 345679999999999999999999999999999988764 69999999 5589999998753
No 104
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.78 E-value=2.5e-19 Score=100.00 Aligned_cols=61 Identities=31% Similarity=0.489 Sum_probs=56.6
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCcceEEEEEeCH-HHHHHHHh
Q psy11978 25 PDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAAFL-KIARAAIE 86 (91)
Q Consensus 25 ~~~~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~afv~~~~-~~a~~Ai~ 86 (91)
...++|||+|||+++++++|+++|++||.|..+.++.++ +|+++|||||+|.. ++|++|++
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~ 68 (102)
T 2xs2_A 7 IMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE 68 (102)
T ss_dssp EEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh
Confidence 345799999999999999999999999999999999998 99999999999854 88999998
No 105
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.78 E-value=7.5e-19 Score=96.01 Aligned_cols=58 Identities=10% Similarity=0.079 Sum_probs=52.7
Q ss_pred CceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCcceEEEEEe-CHHHHHHHHhhcCC
Q psy11978 27 FIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAA-FLKIARAAIEPQKA 90 (91)
Q Consensus 27 ~~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~afv~~-~~~~a~~Ai~~~n~ 90 (91)
+..|||+||++.+|+++|+++|.+||+|.++++.. ++|||||+| +.++|++||+++|-
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~ 65 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNN 65 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTT
T ss_pred cceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcC
Confidence 45899999999999999999999999999999865 579999998 56899999999873
No 106
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.78 E-value=1.5e-18 Score=103.86 Aligned_cols=64 Identities=50% Similarity=0.731 Sum_probs=59.1
Q ss_pred CCceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCC--CcceEEEEEe-CHHHHHHHHhhcC
Q psy11978 26 DFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTG--QSKGKIFEAA-FLKIARAAIEPQK 89 (91)
Q Consensus 26 ~~~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~~~~~~~tg--~~~g~afv~~-~~~~a~~Ai~~~n 89 (91)
+.++|||+|||+++++++|+++|++||.|.++.+++++.++ +++|||||+| +.++|++|++.+|
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~ 68 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALH 68 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHT
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhc
Confidence 45799999999999999999999999999999999999776 8999999998 5599999998776
No 107
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=8.2e-19 Score=99.24 Aligned_cols=66 Identities=23% Similarity=0.361 Sum_probs=58.3
Q ss_pred CCCCCCceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCcceEEEEEeC-HHHHHHHHhhcC
Q psy11978 22 QPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAAF-LKIARAAIEPQK 89 (91)
Q Consensus 22 ~~~~~~~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~afv~~~-~~~a~~Ai~~~n 89 (91)
......++|||+|||+.+++++|+++|++||.|..+.++.++ +.++|||||+|. .++|++|++.+|
T Consensus 24 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~ 90 (109)
T 2err_A 24 ENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLH 90 (109)
T ss_dssp SCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHT
T ss_pred cCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcC
Confidence 345566899999999999999999999999999999999886 348999999985 499999999876
No 108
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=7.2e-19 Score=101.73 Aligned_cols=62 Identities=13% Similarity=0.206 Sum_probs=55.7
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHhhcCCCe----eEEEEeecCCCCCcceEEEEEe-CHHHHHHHHhh
Q psy11978 25 PDFIKMFVGQIPRSMDEADLTKMFSEYGRV----YNINVLRDKVTGQSKGKIFEAA-FLKIARAAIEP 87 (91)
Q Consensus 25 ~~~~~l~V~~L~~~~t~~~l~~~f~~~G~i----~~~~~~~~~~tg~~~g~afv~~-~~~~a~~Ai~~ 87 (91)
.+..+|||+|||+++|+++|+++|++||.| ..|.|+.+. +|+++|||||+| +.++|++||+.
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~-~gr~~G~aFV~F~~~~~A~~Al~~ 87 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYP-DGRPTGDAFVLFACEEYAQNALRK 87 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECT-TSCEEEEEEECCSSHHHHHHHHTT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECC-CCCEeeEEEEEECCHHHHHHHHHh
Confidence 445799999999999999999999999875 689999986 999999999998 55899999985
No 109
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.77 E-value=1.8e-18 Score=96.75 Aligned_cols=60 Identities=18% Similarity=0.189 Sum_probs=53.1
Q ss_pred CCCCceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCcceEEEEEe-CHHHHHHHHhhcC
Q psy11978 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAA-FLKIARAAIEPQK 89 (91)
Q Consensus 24 ~~~~~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~afv~~-~~~~a~~Ai~~~n 89 (91)
.+++++|||+|||+.+++++|+++|++||.|.++.+++ .||||||+| +.++|++||+.+|
T Consensus 18 ~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~------~kg~AFVef~~~~~A~~Av~~ln 78 (100)
T 3r27_A 18 TPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMP------KKRQALVEFEDVLGACNAVNYAA 78 (100)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHH
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc------CCCEEEEEECCHHHHHHHHHHhc
Confidence 44567999999999999999999999999999999875 369999998 5589999998765
No 110
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.77 E-value=1.2e-18 Score=101.22 Aligned_cols=64 Identities=17% Similarity=0.249 Sum_probs=56.4
Q ss_pred CCCCceEEEcCCCCCCcHHHHHHHhhcCCCee--EEEEeecCCCCCcceEEEEEeC-HHHHHHHHhhcC
Q psy11978 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVY--NINVLRDKVTGQSKGKIFEAAF-LKIARAAIEPQK 89 (91)
Q Consensus 24 ~~~~~~l~V~~L~~~~t~~~l~~~f~~~G~i~--~~~~~~~~~tg~~~g~afv~~~-~~~a~~Ai~~~n 89 (91)
.....+|||+|||+++++++|+++|+.| .|. .|.|+.++. |+++|||||+|. .++|++||+..+
T Consensus 39 ~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~~~~ 105 (126)
T 2hgm_A 39 SANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALGKHK 105 (126)
T ss_dssp SSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHTTTT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHCC
Confidence 3456789999999999999999999999 677 899999985 999999999994 589999998643
No 111
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.77 E-value=3.2e-18 Score=104.28 Aligned_cols=64 Identities=23% Similarity=0.290 Sum_probs=59.4
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCcceEEEEEe-CHHHHHHHHhhcC
Q psy11978 25 PDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAA-FLKIARAAIEPQK 89 (91)
Q Consensus 25 ~~~~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~afv~~-~~~~a~~Ai~~~n 89 (91)
...++|||+|||+.+++++|+++|+.||.|..|.++.++ +|.++|||||+| +.++|++||+.+|
T Consensus 86 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~ln 150 (177)
T 2f3j_A 86 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYK 150 (177)
T ss_dssp TTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHST
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhC
Confidence 446799999999999999999999999999999999999 999999999998 5599999999876
No 112
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.77 E-value=2.4e-18 Score=100.00 Aligned_cols=63 Identities=17% Similarity=0.199 Sum_probs=54.4
Q ss_pred CCCCceEEEcCCCCCCcHHHHH----HHhhcCCCeeEEEEeecCCCCCcceEEEEEe-CHHHHHHHHhhcC
Q psy11978 24 DPDFIKMFVGQIPRSMDEADLT----KMFSEYGRVYNINVLRDKVTGQSKGKIFEAA-FLKIARAAIEPQK 89 (91)
Q Consensus 24 ~~~~~~l~V~~L~~~~t~~~l~----~~f~~~G~i~~~~~~~~~~tg~~~g~afv~~-~~~~a~~Ai~~~n 89 (91)
.++.++|||+|||+.+++++|+ ++|++||.|.+|.+.. +++++|||||+| +.++|+.||+.+|
T Consensus 26 ~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~ln 93 (127)
T 2a3j_A 26 TEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQ 93 (127)
T ss_dssp CSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHST
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHC
Confidence 4456799999999999999876 6999999999987743 678999999998 5599999999876
No 113
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.77 E-value=8.8e-19 Score=101.72 Aligned_cols=59 Identities=12% Similarity=0.205 Sum_probs=53.8
Q ss_pred ceEEEcCC----CCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCcceEEEEEeCH------HH---HHHHHh
Q psy11978 28 IKMFVGQI----PRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAAFL------KI---ARAAIE 86 (91)
Q Consensus 28 ~~l~V~~L----~~~~t~~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~afv~~~~------~~---a~~Ai~ 86 (91)
..|||+|| |+.+++.+|+++|+.||+|.++.++.|+.||.++|||||+|.+ ++ |.+||.
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~ 74 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVR 74 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHH
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHH
Confidence 58999999 9999999999999999999999999999999999999999973 33 677776
No 114
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=5e-18 Score=95.57 Aligned_cols=60 Identities=15% Similarity=0.146 Sum_probs=52.5
Q ss_pred CCCCceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCcceEEEEEe-CHHHHHHHHhhcC
Q psy11978 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAA-FLKIARAAIEPQK 89 (91)
Q Consensus 24 ~~~~~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~afv~~-~~~~a~~Ai~~~n 89 (91)
.++.++|||+|||+.+++++|+++|++||.|.++.++.+ +|||||+| +.++|++|++.+|
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~ 72 (104)
T 1wex_A 12 VSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAA 72 (104)
T ss_dssp CCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhc
Confidence 345679999999999999999999999999999988764 69999999 4589999998753
No 115
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=5.8e-18 Score=95.50 Aligned_cols=59 Identities=22% Similarity=0.161 Sum_probs=53.4
Q ss_pred CCCCceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCcceEEEEEe-CHHHHHHHHhhcC
Q psy11978 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAA-FLKIARAAIEPQK 89 (91)
Q Consensus 24 ~~~~~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~afv~~-~~~~a~~Ai~~~n 89 (91)
....++|||+|||+++++++|+++|++||.|..|.++.+ |||||+| +.++|++||+.+|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~ 71 (108)
T 1x4c_A 12 RRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLD 71 (108)
T ss_dssp CSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHC
Confidence 345679999999999999999999999999999999876 8999998 5599999999887
No 116
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.76 E-value=7.8e-19 Score=103.47 Aligned_cols=63 Identities=16% Similarity=0.143 Sum_probs=55.0
Q ss_pred CCCCceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCcceEEEEEeCH-HHHHHHHhhcC
Q psy11978 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAAFL-KIARAAIEPQK 89 (91)
Q Consensus 24 ~~~~~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~afv~~~~-~~a~~Ai~~~n 89 (91)
....++|||+|||+++++++|+++|++|| +..|.|+.++. |+++|||||+|.. ++|++|| ++|
T Consensus 43 ~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al-~~~ 106 (139)
T 2hgn_A 43 STTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPD-GRVTGEADVEFATHEEAVAAM-SKD 106 (139)
T ss_dssp --CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSS-SCSSCCCEEECSHHHHHHHHT-TCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCC-CCCceEEEEEeCCHHHHHHHH-hhC
Confidence 34457899999999999999999999999 77999999984 9999999999965 8999999 554
No 117
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.76 E-value=6e-18 Score=100.44 Aligned_cols=63 Identities=29% Similarity=0.421 Sum_probs=58.9
Q ss_pred CceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCcceEEEEEe-CHHHHHHHHhhcC
Q psy11978 27 FIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAA-FLKIARAAIEPQK 89 (91)
Q Consensus 27 ~~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~afv~~-~~~~a~~Ai~~~n 89 (91)
.++|||+|||+++++++|+++|+.||.|.++.++.++.+|.++|||||+| +.++|++|++.+|
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~ 65 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLN 65 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHT
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcC
Confidence 46899999999999999999999999999999999998999999999998 5699999998765
No 118
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=4.9e-19 Score=100.59 Aligned_cols=67 Identities=18% Similarity=0.283 Sum_probs=54.5
Q ss_pred CCCCCceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCcceEEEEEe-CHHHHHHHHhhcC
Q psy11978 23 PDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAA-FLKIARAAIEPQK 89 (91)
Q Consensus 23 ~~~~~~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~afv~~-~~~~a~~Ai~~~n 89 (91)
+..+.++|||+|||+.+++++|+++|+.||.|..+.+..+..+|+++|||||+| +.++|++||+.+|
T Consensus 21 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~ 88 (115)
T 2cpx_A 21 PGEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVN 88 (115)
T ss_dssp CCSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHST
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhC
Confidence 445668999999999999999999999999984332222222788999999998 5599999999876
No 119
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=4.9e-18 Score=94.53 Aligned_cols=63 Identities=19% Similarity=0.247 Sum_probs=54.9
Q ss_pred CCCCCceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCcceEEEEEe-CHHHHHHHHhhcC
Q psy11978 23 PDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAA-FLKIARAAIEPQK 89 (91)
Q Consensus 23 ~~~~~~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~afv~~-~~~~a~~Ai~~~n 89 (91)
.+.+.++|||+|||+++++++|+++|++||.| .++.+ .+++++|||||+| +.++|++||+.+|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~ 74 (101)
T 2fc9_A 11 WSGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCN 74 (101)
T ss_dssp CSCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhC
Confidence 44556899999999999999999999999976 56666 4899999999998 5599999999876
No 120
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.76 E-value=6.4e-18 Score=96.01 Aligned_cols=63 Identities=14% Similarity=0.305 Sum_probs=55.7
Q ss_pred CCCCceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCcceEEEEEe-CHHHHHHHHhhcC
Q psy11978 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAA-FLKIARAAIEPQK 89 (91)
Q Consensus 24 ~~~~~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~afv~~-~~~~a~~Ai~~~n 89 (91)
++..++|||+|||+.+++++|+++|+.||.|..+.++.+ +.++|||||+| +.++|++|++.+|
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~ 68 (115)
T 3lqv_A 5 PEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLS 68 (115)
T ss_dssp TTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcC
Confidence 345679999999999999999999999999999999875 45589999998 5589999999876
No 121
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.62 E-value=5e-20 Score=105.07 Aligned_cols=66 Identities=24% Similarity=0.293 Sum_probs=60.0
Q ss_pred CCCCceEEEcCCCCCCcHHHHHHHhhcCCCeeE--------EEEeecCCCCCcceEEEEEeCH-HHHHHHHhhcC
Q psy11978 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYN--------INVLRDKVTGQSKGKIFEAAFL-KIARAAIEPQK 89 (91)
Q Consensus 24 ~~~~~~l~V~~L~~~~t~~~l~~~f~~~G~i~~--------~~~~~~~~tg~~~g~afv~~~~-~~a~~Ai~~~n 89 (91)
..+.++|||+|||+.+++++|+++|++||.|.. +.++.++.+++++|||||+|.. ++|++||+.+|
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~ 78 (116)
T 2lcw_A 4 NSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFD 78 (116)
Confidence 455679999999999999999999999999998 8999998899999999999854 89999999876
No 122
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.76 E-value=2.4e-18 Score=102.47 Aligned_cols=62 Identities=26% Similarity=0.483 Sum_probs=57.8
Q ss_pred CCceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCcceEEEEEe-CHHHHHHHHhh
Q psy11978 26 DFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAA-FLKIARAAIEP 87 (91)
Q Consensus 26 ~~~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~afv~~-~~~~a~~Ai~~ 87 (91)
+.++|||+|||+++++++|+++|+.||.|.++.+++++.+|.++|||||+| +.++|++|++.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~ 64 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT 64 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc
Confidence 457999999999999999999999999999999999998999999999998 45899999985
No 123
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=8.5e-18 Score=93.63 Aligned_cols=65 Identities=25% Similarity=0.243 Sum_probs=56.7
Q ss_pred CCCCCCceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCcceEEEEEe-CHHHHHHHHhhcC
Q psy11978 22 QPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAA-FLKIARAAIEPQK 89 (91)
Q Consensus 22 ~~~~~~~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~afv~~-~~~~a~~Ai~~~n 89 (91)
....+.++|||+|||+++++++|+++|+.|+ .+.++.++.++.++|||||+| +.++|++||+.+|
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~ 75 (102)
T 2fc8_A 10 ARSQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAME 75 (102)
T ss_dssp SSSCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHT
T ss_pred CCCCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhC
Confidence 3455668999999999999999999999774 677888888999999999998 5589999999876
No 124
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.75 E-value=2.5e-19 Score=99.82 Aligned_cols=64 Identities=17% Similarity=0.141 Sum_probs=56.3
Q ss_pred CCCCceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCcceEEEEEe-CHHHHHHHHhhcC
Q psy11978 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAA-FLKIARAAIEPQK 89 (91)
Q Consensus 24 ~~~~~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~afv~~-~~~~a~~Ai~~~n 89 (91)
....++|||+|||+++++++|+++|+.||.|.. .++.+..+|+++|||||+| +.++|++||+ +|
T Consensus 14 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~ 78 (101)
T 1fj7_A 14 STTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LT 78 (101)
T ss_dssp CSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GG
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cC
Confidence 345679999999999999999999999999877 6677777899999999998 5589999998 65
No 125
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.75 E-value=5e-18 Score=101.07 Aligned_cols=63 Identities=24% Similarity=0.338 Sum_probs=58.8
Q ss_pred CceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCcceEEEEEe-CHHHHHHHHhhcC
Q psy11978 27 FIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAA-FLKIARAAIEPQK 89 (91)
Q Consensus 27 ~~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~afv~~-~~~~a~~Ai~~~n 89 (91)
.++|||+|||+++++++|+++|+.||.|.++.++.++.+|.++|||||+| +.++|++|++.+|
T Consensus 3 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~ 66 (168)
T 1b7f_A 3 NTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLN 66 (168)
T ss_dssp CSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHT
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcC
Confidence 46899999999999999999999999999999999988999999999998 5699999998765
No 126
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.75 E-value=2.5e-17 Score=97.69 Aligned_cols=68 Identities=24% Similarity=0.382 Sum_probs=62.1
Q ss_pred CCCCCCceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCcceEEEEEe-CHHHHHHHHhhcC
Q psy11978 22 QPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAA-FLKIARAAIEPQK 89 (91)
Q Consensus 22 ~~~~~~~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~afv~~-~~~~a~~Ai~~~n 89 (91)
.......+|||+|||+.+++++|+++|++||.|..+.++.++.+|.++|||||+| +.++|++|+..+|
T Consensus 82 ~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~ 150 (166)
T 3md3_A 82 SSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQ 150 (166)
T ss_dssp CCCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHT
T ss_pred CCCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhC
Confidence 3455567999999999999999999999999999999999988999999999998 5699999999876
No 127
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=1.4e-17 Score=92.06 Aligned_cols=61 Identities=18% Similarity=0.301 Sum_probs=53.6
Q ss_pred CCCCCceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCcceEEEEEe-CHHHHHHHHhhcC
Q psy11978 23 PDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAA-FLKIARAAIEPQK 89 (91)
Q Consensus 23 ~~~~~~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~afv~~-~~~~a~~Ai~~~n 89 (91)
..++.++|||+|||+++++++|+++|++||.|..+.+..+ +|||||+| +.++|++|++++|
T Consensus 13 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~ 74 (97)
T 1why_A 13 KANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMR 74 (97)
T ss_dssp CCCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHT
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHC
Confidence 3445679999999999999999999999999999988754 68999998 5589999999876
No 128
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.75 E-value=6.6e-18 Score=114.78 Aligned_cols=65 Identities=22% Similarity=0.388 Sum_probs=60.3
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCcceEEEEEe-CHHHHHHHHhhcC
Q psy11978 25 PDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAA-FLKIARAAIEPQK 89 (91)
Q Consensus 25 ~~~~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~afv~~-~~~~a~~Ai~~~n 89 (91)
...++|||+|||+.+|+++|.++|++||.|..|.|+.++.+|+++|||||+| +.++|++||+++|
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~ln 165 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHAD 165 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcC
Confidence 4457999999999999999999999999999999999988999999999998 4589999999887
No 129
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=3.6e-18 Score=97.36 Aligned_cols=60 Identities=18% Similarity=0.241 Sum_probs=52.8
Q ss_pred CCCCceEEEcCCCCC-CcHHHHHHHhhcCCCeeEEEEeecCCCCCcceEEEEEe-CHHHHHHHHhhcC
Q psy11978 24 DPDFIKMFVGQIPRS-MDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAA-FLKIARAAIEPQK 89 (91)
Q Consensus 24 ~~~~~~l~V~~L~~~-~t~~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~afv~~-~~~~a~~Ai~~~n 89 (91)
..+.++|||+|||++ +++++|+++|++||.|.+|.+++ ++|||||+| +.++|++||+.+|
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~------~kg~aFVef~~~~~A~~Ai~~l~ 83 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR------MKSQAFIEMETREDAMAMVDHCL 83 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhc
Confidence 445679999999998 99999999999999999999864 469999998 5589999999764
No 130
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.75 E-value=3.2e-18 Score=97.44 Aligned_cols=62 Identities=15% Similarity=0.057 Sum_probs=54.1
Q ss_pred CCCCceEEEcCCCCCCcHHHHHHHhhcCC-CeeEEEEeecCCCCCcceEEEEEe-CHHHHHHHHhhcC
Q psy11978 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYG-RVYNINVLRDKVTGQSKGKIFEAA-FLKIARAAIEPQK 89 (91)
Q Consensus 24 ~~~~~~l~V~~L~~~~t~~~l~~~f~~~G-~i~~~~~~~~~~tg~~~g~afv~~-~~~~a~~Ai~~~n 89 (91)
++...+|||+|||+++++++|+++|++|| .|..+.+... .++|||||+| +.++|++||+.+|
T Consensus 25 p~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~----~~rGfaFV~F~~~e~A~~Ai~~ln 88 (111)
T 2jvr_A 25 PAKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTR----DFDGTGALEFPSEEILVEALERLN 88 (111)
T ss_dssp CCCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSC----SSSCCEEEEESSHHHHHHHHHHTT
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcC----CCCCEEEEEECCHHHHHHHHHHcC
Confidence 44567999999999999999999999999 8999887532 4789999998 5599999999877
No 131
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=1.6e-17 Score=90.77 Aligned_cols=59 Identities=25% Similarity=0.518 Sum_probs=52.7
Q ss_pred CCCCCceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCcceEEEEEe-CHHHHHHHHhhcC
Q psy11978 23 PDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAA-FLKIARAAIEPQK 89 (91)
Q Consensus 23 ~~~~~~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~afv~~-~~~~a~~Ai~~~n 89 (91)
+..+.++|||+|||+++++++|+++|++||.|..+.++ +|||||+| +.++|++|++.+|
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~ 63 (90)
T 2dnq_A 4 GSSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLH 63 (90)
T ss_dssp CSSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHT
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhc
Confidence 34556899999999999999999999999999999986 58999998 5599999998776
No 132
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=1.2e-17 Score=92.47 Aligned_cols=62 Identities=21% Similarity=0.317 Sum_probs=52.9
Q ss_pred CCCCCceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCcceEEEEEe-CHHHHHHHHhhcC
Q psy11978 23 PDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAA-FLKIARAAIEPQK 89 (91)
Q Consensus 23 ~~~~~~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~afv~~-~~~~a~~Ai~~~n 89 (91)
..+..++|||+|||+++++++|+++|++||.|. +.++.+ .++|||||+| +.++|++||+.+|
T Consensus 15 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~----~~~g~afV~f~~~~~a~~A~~~l~ 77 (97)
T 2e5j_A 15 GAPLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ----GPRRRAFLHYPDSAAAQQAVSCLQ 77 (97)
T ss_dssp SSCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE----TTTTEEEEECSSHHHHHHHHHHHT
T ss_pred CCCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC----CCCcEEEEEECCHHHHHHHHHHhC
Confidence 344567999999999999999999999999996 666654 5789999998 5589999998876
No 133
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=2.7e-17 Score=88.80 Aligned_cols=59 Identities=24% Similarity=0.413 Sum_probs=52.9
Q ss_pred CCCCceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCcceEEEEEe-CHHHHHHHHhhc
Q psy11978 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAA-FLKIARAAIEPQ 88 (91)
Q Consensus 24 ~~~~~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~afv~~-~~~~a~~Ai~~~ 88 (91)
....++|||+|||+.+++++|+++|++||.|..+.++.+ +|||||+| +.++|++|++++
T Consensus 9 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l 68 (85)
T 2ytc_A 9 DKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR------QQCAFIQFATRQAAEVAAEKS 68 (85)
T ss_dssp CSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHTT
T ss_pred CCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC------CCEEEEEECCHHHHHHHHHHh
Confidence 455679999999999999999999999999999998864 69999998 559999999987
No 134
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=3.9e-18 Score=97.41 Aligned_cols=59 Identities=14% Similarity=0.110 Sum_probs=51.8
Q ss_pred CCCceEEE--cCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCcceEEEEEe-CHHHHHHHHhhcC
Q psy11978 25 PDFIKMFV--GQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAA-FLKIARAAIEPQK 89 (91)
Q Consensus 25 ~~~~~l~V--~~L~~~~t~~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~afv~~-~~~~a~~Ai~~~n 89 (91)
.+.++||| |||++.+++++|+++|++||.|.++.++. .+|||||+| +.++|++|++++|
T Consensus 23 ~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~------~rgfaFV~f~~~~~A~~Ai~~ln 84 (114)
T 2cq2_A 23 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLN 84 (114)
T ss_dssp SCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT------TCSCEEEEESSHHHHHHHHHHTT
T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhC
Confidence 34568999 88999999999999999999999988753 369999998 5589999999987
No 135
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.74 E-value=7.8e-18 Score=92.23 Aligned_cols=57 Identities=23% Similarity=0.371 Sum_probs=46.8
Q ss_pred CCCCCceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCcceEEEEEeCH-HHHHHH
Q psy11978 23 PDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAAFL-KIARAA 84 (91)
Q Consensus 23 ~~~~~~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~afv~~~~-~~a~~A 84 (91)
......+|||+|||+++++++|+++|++||.|.+|.++++ ++|||||+|.. ++|+++
T Consensus 7 ~~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~~ 64 (89)
T 3d2w_A 7 HHHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQSL 64 (89)
T ss_dssp ----CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHHH
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHHH
Confidence 3455679999999999999999999999999999999874 68999999954 666643
No 136
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.74 E-value=1.2e-17 Score=94.38 Aligned_cols=60 Identities=23% Similarity=0.426 Sum_probs=52.8
Q ss_pred CCCCCCceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCcceEEEEEe-CHHHHHHHHhhcC
Q psy11978 22 QPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAA-FLKIARAAIEPQK 89 (91)
Q Consensus 22 ~~~~~~~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~afv~~-~~~~a~~Ai~~~n 89 (91)
......++|||+|||+++++++|+++|++||.|..+.++ +|||||+| +.++|++|++.+|
T Consensus 26 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~ 86 (108)
T 2jvo_A 26 EGELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVH 86 (108)
T ss_dssp --CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHT
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcC
Confidence 345567899999999999999999999999999999987 69999998 5589999999876
No 137
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.74 E-value=1.6e-17 Score=92.38 Aligned_cols=59 Identities=25% Similarity=0.419 Sum_probs=52.7
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCcceEEEEEe-CHHHHHHHHhhcC
Q psy11978 25 PDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAA-FLKIARAAIEPQK 89 (91)
Q Consensus 25 ~~~~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~afv~~-~~~~a~~Ai~~~n 89 (91)
...++|||+|||+++++++|+++|++||.|.++.+. +++|||||+| +.++|++|+..+|
T Consensus 25 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~------~~~g~afV~f~~~~~A~~Ai~~l~ 84 (101)
T 2la4_A 25 PRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY------PEKGCCFIKYDTHEQAAVCIVALA 84 (101)
T ss_dssp SSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE------TTTTEEEEECSSHHHHHHHHHHHT
T ss_pred CCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe------cCCCEEEEEECCHHHHHHHHHHhC
Confidence 445799999999999999999999999999999987 3579999998 5589999998876
No 138
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.74 E-value=2e-17 Score=91.78 Aligned_cols=60 Identities=27% Similarity=0.453 Sum_probs=52.4
Q ss_pred CCCCCCceEEEcCCCC-CCcHHHHHHHhhcCCCeeEEEEeecCCCCCcceEEEEEe-CHHHHHHHHhhcC
Q psy11978 22 QPDPDFIKMFVGQIPR-SMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAA-FLKIARAAIEPQK 89 (91)
Q Consensus 22 ~~~~~~~~l~V~~L~~-~~t~~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~afv~~-~~~~a~~Ai~~~n 89 (91)
...++.++|||+|||+ ++++++|+++|++||.|..+.+. +|||||+| +.++|++|++.+|
T Consensus 17 ~~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~ 78 (97)
T 2xnq_A 17 RGSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXES 78 (97)
T ss_dssp --CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHT
T ss_pred CCCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcC
Confidence 3456678999999998 99999999999999999999882 79999998 5599999999876
No 139
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=1.6e-17 Score=92.15 Aligned_cols=62 Identities=24% Similarity=0.409 Sum_probs=54.2
Q ss_pred CCCCCCceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCcceEEEEEeCH-HHHHHHHhhcC
Q psy11978 22 QPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAAFL-KIARAAIEPQK 89 (91)
Q Consensus 22 ~~~~~~~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~afv~~~~-~~a~~Ai~~~n 89 (91)
....+.++|||+|||+.+++++|+++|++||.|..+.++++ +|||||+|.. ++|++|++.+|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~ 72 (99)
T 2cpj_A 10 KTFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELD 72 (99)
T ss_dssp CCCCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHT
T ss_pred CcCCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhC
Confidence 34455679999999999999999999999999999998754 6999999854 99999998876
No 140
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.73 E-value=3.8e-18 Score=94.22 Aligned_cols=63 Identities=17% Similarity=0.367 Sum_probs=55.2
Q ss_pred CCCCceEEEcCCCCCCcHHHHH----HHhhcCCCeeEEEEeecCCCCCcceEEEEEe-CHHHHHHHHhhcC
Q psy11978 24 DPDFIKMFVGQIPRSMDEADLT----KMFSEYGRVYNINVLRDKVTGQSKGKIFEAA-FLKIARAAIEPQK 89 (91)
Q Consensus 24 ~~~~~~l~V~~L~~~~t~~~l~----~~f~~~G~i~~~~~~~~~~tg~~~g~afv~~-~~~~a~~Ai~~~n 89 (91)
.++.++|||+|||+++++++|+ ++|++||.|..+.++. +|.++|||||+| +.++|++|++.+|
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~ 72 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQ 72 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhC
Confidence 3456799999999999999999 9999999999998863 578899999998 5589999999876
No 141
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.73 E-value=1.8e-17 Score=102.24 Aligned_cols=64 Identities=25% Similarity=0.393 Sum_probs=57.6
Q ss_pred CCceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCcceEEEEEe-CHHHHHHHHhhcC
Q psy11978 26 DFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAA-FLKIARAAIEPQK 89 (91)
Q Consensus 26 ~~~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~afv~~-~~~~a~~Ai~~~n 89 (91)
+.++|||+|||+++++++|+++|+.||.|.+|.+++++.+|.++|||||+| +.++|++|++.+|
T Consensus 27 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~ 91 (216)
T 2qfj_A 27 IMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMN 91 (216)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHS
T ss_pred cCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHcc
Confidence 356899999999999999999999999999999999998999999999998 5699999999765
No 142
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.73 E-value=3.1e-17 Score=98.04 Aligned_cols=66 Identities=24% Similarity=0.521 Sum_probs=60.5
Q ss_pred CCCCceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCcceEEEEEeC-HHHHHHHHhhcC
Q psy11978 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAAF-LKIARAAIEPQK 89 (91)
Q Consensus 24 ~~~~~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~afv~~~-~~~a~~Ai~~~n 89 (91)
.....+|||+|||+.+++++|+++|++||.|..+.++.++.+|.++|||||+|. .++|++|++++|
T Consensus 91 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~ 157 (172)
T 2g4b_A 91 LPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLN 157 (172)
T ss_dssp CTTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHT
T ss_pred CCCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcC
Confidence 344678999999999999999999999999999999999889999999999984 589999999876
No 143
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.72 E-value=3.2e-17 Score=100.98 Aligned_cols=62 Identities=21% Similarity=0.322 Sum_probs=57.2
Q ss_pred CceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCcceEEEEEe-CHHHHHHHHhhcC
Q psy11978 27 FIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAA-FLKIARAAIEPQK 89 (91)
Q Consensus 27 ~~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~afv~~-~~~~a~~Ai~~~n 89 (91)
.++|||+|||+.+++++|+++|++||.|..|+++++. +|.++|||||+| +.++|++|++.+|
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~-~~~~kG~aFVeF~~~e~A~~A~~~~~ 171 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTL-HKAFKGSIFVVFDSIESAKKFVETPG 171 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECT-TCCEEEEEEEEESSHHHHHHHHHCTT
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHhCC
Confidence 4789999999999999999999999999999999987 699999999999 5589999998765
No 144
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.72 E-value=2.9e-17 Score=98.18 Aligned_cols=64 Identities=30% Similarity=0.499 Sum_probs=59.0
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCcceEEEEEe-CHHHHHHHHhhcC
Q psy11978 25 PDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAA-FLKIARAAIEPQK 89 (91)
Q Consensus 25 ~~~~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~afv~~-~~~~a~~Ai~~~n 89 (91)
...++|||+|||+.+++++|+++|++||.|.++.++.++ +|.++|||||+| +.++|++|++++|
T Consensus 93 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~ 157 (175)
T 3nmr_A 93 VEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGP-DGLSRGCAFVTFTTRAMAQTAIKAMH 157 (175)
T ss_dssp GGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHT
T ss_pred CCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECC-CCCEEEEEEEEECCHHHHHHHHHHhc
Confidence 356789999999999999999999999999999999997 799999999998 5599999999887
No 145
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.72 E-value=2.6e-17 Score=97.45 Aligned_cols=62 Identities=23% Similarity=0.313 Sum_probs=55.4
Q ss_pred CCCCCceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCcceEEEEEe-CHHHHHHHHhhcC
Q psy11978 23 PDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAA-FLKIARAAIEPQK 89 (91)
Q Consensus 23 ~~~~~~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~afv~~-~~~~a~~Ai~~~n 89 (91)
.....++|||+|||+.+++++|+++|++||.|.++.++.+ ++|||||+| +.++|+.||+.+|
T Consensus 69 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~ 131 (150)
T 2i2y_A 69 SCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELD 131 (150)
T ss_dssp SSTTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcC
Confidence 4455689999999999999999999999999999999876 589999998 5589999999876
No 146
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.72 E-value=4.5e-17 Score=99.09 Aligned_cols=64 Identities=23% Similarity=0.422 Sum_probs=58.2
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCcceEEEEEe-CHHHHHHHHhhc
Q psy11978 25 PDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAA-FLKIARAAIEPQ 88 (91)
Q Consensus 25 ~~~~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~afv~~-~~~~a~~Ai~~~ 88 (91)
...++|||+|||+++++++|+++|+.||.|..+.++.++.+|.++|||||+| +.++|++|++..
T Consensus 102 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~~ 166 (196)
T 1l3k_A 102 LTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQK 166 (196)
T ss_dssp -CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHCS
T ss_pred CCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHhC
Confidence 3457899999999999999999999999999999999998999999999998 558999999763
No 147
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.72 E-value=1.7e-17 Score=98.37 Aligned_cols=61 Identities=21% Similarity=0.318 Sum_probs=55.7
Q ss_pred ceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCcceEEEEEe-CHHHHHHHHhhcC
Q psy11978 28 IKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAA-FLKIARAAIEPQK 89 (91)
Q Consensus 28 ~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~afv~~-~~~~a~~Ai~~~n 89 (91)
++|||+|||+++++++|+++|++||.|.++.++.++ +++++|||||+| +.++|++|++.+|
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~ 62 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDK-NNKNVNYAFVEYHQSHDANIALQTLN 62 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCC-C-CCEEEEEEEESSHHHHHHHHHHHT
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECC-CCCCCCEEEEEeCCHHHHHHHHHHcC
Confidence 489999999999999999999999999999999998 688999999998 5699999998776
No 148
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=2.6e-17 Score=92.84 Aligned_cols=60 Identities=23% Similarity=0.401 Sum_probs=53.8
Q ss_pred CCCCceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCcceEEEEEe-CHHHHHHHHhhcC
Q psy11978 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAA-FLKIARAAIEPQK 89 (91)
Q Consensus 24 ~~~~~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~afv~~-~~~~a~~Ai~~~n 89 (91)
....++|||+|||+.+++++|+++|++||.|..|.++.+ +|||||+| +.++|++||+.+|
T Consensus 22 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~ 82 (109)
T 1x4g_A 22 SPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVN 82 (109)
T ss_dssp CSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHT
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcC
Confidence 445679999999999999999999999999999999876 69999998 5589999998876
No 149
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.72 E-value=1.1e-17 Score=95.40 Aligned_cols=58 Identities=22% Similarity=0.165 Sum_probs=51.1
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCcceEEEEEe-CHHHHHHHHhhcC
Q psy11978 25 PDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAA-FLKIARAAIEPQK 89 (91)
Q Consensus 25 ~~~~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~afv~~-~~~~a~~Ai~~~n 89 (91)
...++|||+|||+++++++|+++|++||.|..|.++.+ |||||+| +.++|++||+++|
T Consensus 14 r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~ 72 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLD 72 (115)
T ss_dssp ---CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHT
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhC
Confidence 34578999999999999999999999999999998765 9999998 5599999999887
No 150
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.72 E-value=1e-17 Score=92.36 Aligned_cols=62 Identities=15% Similarity=0.183 Sum_probs=53.6
Q ss_pred CCCCCceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCcceEEEEEe-CHHHHHHHHhhcC
Q psy11978 23 PDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAA-FLKIARAAIEPQK 89 (91)
Q Consensus 23 ~~~~~~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~afv~~-~~~~a~~Ai~~~n 89 (91)
...+.++|||+|||+.+++++|+++|+.||.|..+ ..++.++|||||+| +.++|++|++.+|
T Consensus 12 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~ 74 (96)
T 1fjc_A 12 KVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQ 74 (96)
T ss_dssp TTTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTT
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhC
Confidence 34556899999999999999999999999987665 34789999999998 5599999999876
No 151
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.72 E-value=1e-16 Score=95.36 Aligned_cols=66 Identities=29% Similarity=0.535 Sum_probs=60.8
Q ss_pred CCCCceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCcceEEEEEe-CHHHHHHHHhhcC
Q psy11978 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAA-FLKIARAAIEPQK 89 (91)
Q Consensus 24 ~~~~~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~afv~~-~~~~a~~Ai~~~n 89 (91)
.....+|||+|||..+++++|+++|++||.|..+.++.+..+|.++|||||+| +.++|++|++.+|
T Consensus 86 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~ 152 (168)
T 1b7f_A 86 SIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALN 152 (168)
T ss_dssp TTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHT
T ss_pred cCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhc
Confidence 34567999999999999999999999999999999999998999999999998 5599999999876
No 152
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.72 E-value=3.4e-17 Score=90.52 Aligned_cols=59 Identities=29% Similarity=0.470 Sum_probs=51.1
Q ss_pred CCCCCceEEEcCCCC-CCcHHHHHHHhhcCCCeeEEEEeecCCCCCcceEEEEEe-CHHHHHHHHhhcC
Q psy11978 23 PDPDFIKMFVGQIPR-SMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAA-FLKIARAAIEPQK 89 (91)
Q Consensus 23 ~~~~~~~l~V~~L~~-~~t~~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~afv~~-~~~~a~~Ai~~~n 89 (91)
..++.++|||+|||+ .+++++|+++|++||.|..+.+. +|||||+| +.++|++|++.+|
T Consensus 6 ~~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~ 66 (96)
T 2kvi_A 6 NIPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECES 66 (96)
T ss_dssp ---CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHT
T ss_pred cCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcC
Confidence 345577999999999 99999999999999999999883 69999998 5599999999876
No 153
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.72 E-value=1.3e-17 Score=92.83 Aligned_cols=57 Identities=23% Similarity=0.387 Sum_probs=51.9
Q ss_pred ceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCcceEEEEEe-CHHHHHHHHhhcC
Q psy11978 28 IKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAA-FLKIARAAIEPQK 89 (91)
Q Consensus 28 ~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~afv~~-~~~~a~~Ai~~~n 89 (91)
++|||+|||+++++++|+++|++||.|..+.++.+ ++|||||+| +.++|++|++++|
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~ 58 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLD 58 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHH
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHC
Confidence 47999999999999999999999999999999887 689999998 5589999998764
No 154
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.72 E-value=5.9e-17 Score=99.85 Aligned_cols=65 Identities=20% Similarity=0.453 Sum_probs=60.2
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCcceEEEEEe-CHHHHHHHHhhcC
Q psy11978 25 PDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAA-FLKIARAAIEPQK 89 (91)
Q Consensus 25 ~~~~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~afv~~-~~~~a~~Ai~~~n 89 (91)
...++|||+|||+.+++++|+++|+.||.|..+.++.++.+|+++|||||+| +.++|.+|++.+|
T Consensus 123 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~ 188 (216)
T 2qfj_A 123 RAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMN 188 (216)
T ss_dssp TTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHT
T ss_pred CCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHcc
Confidence 3456899999999999999999999999999999999988999999999998 5599999999876
No 155
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.71 E-value=8.2e-17 Score=95.50 Aligned_cols=65 Identities=31% Similarity=0.475 Sum_probs=60.0
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCcceEEEEEe-CHHHHHHHHhhcC
Q psy11978 25 PDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAA-FLKIARAAIEPQK 89 (91)
Q Consensus 25 ~~~~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~afv~~-~~~~a~~Ai~~~n 89 (91)
....+|||+|||..+++++|+++|++||.|..+.++.+..+|.++|||||+| +.++|++|++.+|
T Consensus 86 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~ 151 (167)
T 1fxl_A 86 IRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLN 151 (167)
T ss_dssp GTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHT
T ss_pred CCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhc
Confidence 3456899999999999999999999999999999999988999999999998 5589999999876
No 156
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.71 E-value=5.7e-17 Score=97.65 Aligned_cols=62 Identities=15% Similarity=0.156 Sum_probs=54.0
Q ss_pred CCCCceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCcceEEEEEe-CHHHHHHHHhhcC
Q psy11978 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAA-FLKIARAAIEPQK 89 (91)
Q Consensus 24 ~~~~~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~afv~~-~~~~a~~Ai~~~n 89 (91)
+....+|||+||++.+++++|+++|++||.|.+|.+.... ++|||||+| +.++|++|++++|
T Consensus 43 ps~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~----~rgfAFVeF~d~~~A~~Ai~~Ln 105 (164)
T 1sjr_A 43 QSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN----NQFQALLQYADPVSAQHAKLSLD 105 (164)
T ss_dssp CCCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESS----SCEEEEEEESCHHHHHHHHHHST
T ss_pred CCceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCC----CCCEEEEEECCHHHHHHHHHHhC
Confidence 3445679999999999999999999999999999986543 579999999 5589999999887
No 157
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=1.5e-16 Score=87.55 Aligned_cols=59 Identities=25% Similarity=0.400 Sum_probs=51.0
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCcceEEEEEe-CHHHHHHHHhhcC
Q psy11978 25 PDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAA-FLKIARAAIEPQK 89 (91)
Q Consensus 25 ~~~~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~afv~~-~~~~a~~Ai~~~n 89 (91)
...++|||+|||+++++++|+++|++||.|.+| +.++.+|+ ||||+| +.++|++||+ +|
T Consensus 6 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~ 65 (94)
T 2e5g_A 6 SGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QS 65 (94)
T ss_dssp TTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CS
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cC
Confidence 345699999999999999999999999999987 66665665 999998 5589999998 66
No 158
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.71 E-value=5.9e-17 Score=91.47 Aligned_cols=58 Identities=29% Similarity=0.470 Sum_probs=51.6
Q ss_pred CCCCceEEEcCCCCC-CcHHHHHHHhhcCCCeeEEEEeecCCCCCcceEEEEEeCH-HHHHHHHhhcC
Q psy11978 24 DPDFIKMFVGQIPRS-MDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAAFL-KIARAAIEPQK 89 (91)
Q Consensus 24 ~~~~~~l~V~~L~~~-~t~~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~afv~~~~-~~a~~Ai~~~n 89 (91)
....++|||+|||+. +++++|+++|++||.|..|.+ ++|||||+|.. ++|++||+.+|
T Consensus 24 ~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~ 83 (110)
T 1wf1_A 24 KSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGEN 83 (110)
T ss_dssp TTCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHT
T ss_pred CCCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcC
Confidence 344579999999999 999999999999999999988 57999999854 89999998876
No 159
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.70 E-value=3.8e-18 Score=100.36 Aligned_cols=67 Identities=22% Similarity=0.367 Sum_probs=54.4
Q ss_pred CCCCCceEEEcCCCCCCcHHHHHHHhhcCCCeeEEE--E---eecCCCCCcceEEEEEe-CHHHHHHHHhhcC
Q psy11978 23 PDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNIN--V---LRDKVTGQSKGKIFEAA-FLKIARAAIEPQK 89 (91)
Q Consensus 23 ~~~~~~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~--~---~~~~~tg~~~g~afv~~-~~~~a~~Ai~~~n 89 (91)
+..+.++|||+|||+.+++++|+++|+.||.|..+. + +....+|+++|||||+| +.++|++||+.+|
T Consensus 41 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~ln 113 (143)
T 3egn_A 41 PGEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEAN 113 (143)
T ss_dssp CCSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHT
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhC
Confidence 345567999999999999999999999999987641 1 11123788999999998 5599999999876
No 160
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.70 E-value=7.9e-17 Score=98.16 Aligned_cols=65 Identities=23% Similarity=0.475 Sum_probs=60.2
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCcceEEEEEeCH-HHHHHHHhhcC
Q psy11978 25 PDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAAFL-KIARAAIEPQK 89 (91)
Q Consensus 25 ~~~~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~afv~~~~-~~a~~Ai~~~n 89 (91)
...++|||+|||+.+++++|+++|++||.|..+.++.++.+|.++|||||+|.. ++|++|++.+|
T Consensus 112 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~ 177 (198)
T 2yh0_A 112 DSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLN 177 (198)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcC
Confidence 456799999999999999999999999999999999998899999999999854 89999999876
No 161
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=2.2e-16 Score=87.53 Aligned_cols=59 Identities=17% Similarity=0.170 Sum_probs=51.5
Q ss_pred CCCCCceEEEcCCCCCCcHHHHHHHhhcC--CCeeEEEEeecCCCCCcceEEEEEe-CHHHHHHHHhhcC
Q psy11978 23 PDPDFIKMFVGQIPRSMDEADLTKMFSEY--GRVYNINVLRDKVTGQSKGKIFEAA-FLKIARAAIEPQK 89 (91)
Q Consensus 23 ~~~~~~~l~V~~L~~~~t~~~l~~~f~~~--G~i~~~~~~~~~~tg~~~g~afv~~-~~~~a~~Ai~~~n 89 (91)
.....++|||+|||+.+++++|+++|++| |.|..+.+. +|||||+| +.++|++||+.+|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~ 72 (99)
T 2cpd_A 11 TMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALN 72 (99)
T ss_dssp CSSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHS
T ss_pred ccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhC
Confidence 34556799999999999999999999999 889888763 68999998 5589999999876
No 162
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.70 E-value=9.4e-17 Score=89.68 Aligned_cols=57 Identities=25% Similarity=0.311 Sum_probs=51.0
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCcceEEEEEe-CHHHHHHHHhhcC
Q psy11978 25 PDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAA-FLKIARAAIEPQK 89 (91)
Q Consensus 25 ~~~~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~afv~~-~~~~a~~Ai~~~n 89 (91)
.+.++|||+|||+++++++|+++|++||.|..+.++ +|||||+| +.++|++||+.+|
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~--------~~~afV~f~~~~~a~~A~~~l~ 66 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL--------KDYAFIHFDERDGAVKAMEEMN 66 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESSHHHHHHHHHHHT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEeCCHHHHHHHHHHHC
Confidence 445789999999999999999999999999999875 46999998 5599999999876
No 163
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=1.5e-16 Score=87.21 Aligned_cols=59 Identities=25% Similarity=0.327 Sum_probs=52.1
Q ss_pred CCCCCceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCcceEEEEEe-CHHHHHHHHhhcC
Q psy11978 23 PDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAA-FLKIARAAIEPQK 89 (91)
Q Consensus 23 ~~~~~~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~afv~~-~~~~a~~Ai~~~n 89 (91)
.....++|||+|||+.+++++|+++|++||.|..+.++ ++||||+| +.++|++|++.+|
T Consensus 6 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~--------~~~afV~f~~~~~a~~A~~~l~ 65 (92)
T 2dgt_A 6 SGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV--------KDYAFVHMERAEDAVEAIRGLD 65 (92)
T ss_dssp CCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEEC--------SSEEEEEESCHHHHHHHHHHHT
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE--------CCEEEEEECCHHHHHHHHHHhC
Confidence 34556899999999999999999999999999999986 35999998 5599999998876
No 164
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=6.6e-17 Score=91.70 Aligned_cols=58 Identities=14% Similarity=0.115 Sum_probs=51.9
Q ss_pred CCceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCcceEEEEEe-CHHHHHHHHhhcC
Q psy11978 26 DFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAA-FLKIARAAIEPQK 89 (91)
Q Consensus 26 ~~~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~afv~~-~~~~a~~Ai~~~n 89 (91)
..++|||+|||+.+++++|+++|++||.|..|.++. ++|||||+| +.++|++||+.+|
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~ 67 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLA 67 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhC
Confidence 356899999999999999999999999999998764 569999998 5599999999886
No 165
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=3.4e-17 Score=89.11 Aligned_cols=57 Identities=25% Similarity=0.377 Sum_probs=48.7
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCcceEEEEEeC-HHHHHHHHh
Q psy11978 25 PDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAAF-LKIARAAIE 86 (91)
Q Consensus 25 ~~~~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~afv~~~-~~~a~~Ai~ 86 (91)
...++|||+|||+++++++|+++|++||.|..+.++.+ ++|||||+|. .++|++|+.
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~ 60 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCG 60 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTTT
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHhc
Confidence 34579999999999999999999999999999998765 6899999984 477776543
No 166
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=1.5e-16 Score=86.81 Aligned_cols=58 Identities=28% Similarity=0.384 Sum_probs=51.5
Q ss_pred CCCCceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCcceEEEEEe-CHHHHHHHHhhcC
Q psy11978 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAA-FLKIARAAIEPQK 89 (91)
Q Consensus 24 ~~~~~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~afv~~-~~~~a~~Ai~~~n 89 (91)
....++|||+|||+.+++++|+++|++||.|..+.++ ++||||+| +.++|++||+.+|
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~--------~~~afV~f~~~~~a~~A~~~l~ 64 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVV--------KDYAFVHMEKEADAKAAIAQLN 64 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESCHHHHHHHHHHHT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhC
Confidence 4456799999999999999999999999999999986 35999998 5589999999876
No 167
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.69 E-value=2.1e-16 Score=92.03 Aligned_cols=60 Identities=15% Similarity=0.144 Sum_probs=52.5
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCcceE-EEEEe-CHHHHHHHHhhcC
Q psy11978 25 PDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGK-IFEAA-FLKIARAAIEPQK 89 (91)
Q Consensus 25 ~~~~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~-afv~~-~~~~a~~Ai~~~n 89 (91)
..-..|||+||++.+|+++|+++|++||.|.+|.++... +|| |||+| +.++|++|++++|
T Consensus 26 s~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~-----~gfqAFVef~~~~~A~~Ai~~Ln 87 (130)
T 3zzy_A 26 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN-----NQFQALLQYADPVSAQHAKLSLD 87 (130)
T ss_dssp CSEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEET-----TEEEEEEEESCHHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCC-----CCcEEEEEECCHHHHHHHHHHcC
Confidence 344579999999999999999999999999999887643 688 99998 5599999999887
No 168
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=4.4e-17 Score=89.41 Aligned_cols=59 Identities=19% Similarity=0.269 Sum_probs=50.2
Q ss_pred CCCCceEEEcCCCCCCcHHHHHHHhhcCCC-eeEEEEeecCCCCCcceEEEEEe-CHHHHHHHHhhcC
Q psy11978 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGR-VYNINVLRDKVTGQSKGKIFEAA-FLKIARAAIEPQK 89 (91)
Q Consensus 24 ~~~~~~l~V~~L~~~~t~~~l~~~f~~~G~-i~~~~~~~~~~tg~~~g~afv~~-~~~~a~~Ai~~~n 89 (91)
....++|||+|||+++++++|+++|++||. |..+.+ .++|||||+| +.++|++|++.+|
T Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~-------~~~g~afV~f~~~~~A~~A~~~l~ 65 (93)
T 2cqh_A 5 SSGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVL-------LKSGYAFVDYPDQNWAIRAIETLS 65 (93)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEE-------EETTEEEECCSCHHHHHHHHHHHT
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEE-------cCCCEEEEEECCHHHHHHHHHHcc
Confidence 345679999999999999999999999999 665555 2479999998 5589999999887
No 169
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.69 E-value=7.3e-17 Score=96.03 Aligned_cols=60 Identities=27% Similarity=0.405 Sum_probs=56.3
Q ss_pred CceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCcceEEEEEe-CHHHHHHHHh
Q psy11978 27 FIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAA-FLKIARAAIE 86 (91)
Q Consensus 27 ~~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~afv~~-~~~~a~~Ai~ 86 (91)
..+|||+|||+.+++++|+++|+.||.|..+.++.++.+|.++|||||+| +.++|++|++
T Consensus 87 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~ 147 (167)
T 2cjk_A 87 TGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ 147 (167)
T ss_dssp CEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH
T ss_pred CCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh
Confidence 46899999999999999999999999999999999988999999999998 5589999997
No 170
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=1.4e-16 Score=87.82 Aligned_cols=62 Identities=21% Similarity=0.229 Sum_probs=53.3
Q ss_pred CCCCceEEEcCCCCCCcHHHHHHHhhcCCCeeEE-EEeecCCCCCcceEEEEEe-CHHHHHHHHhhcC
Q psy11978 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNI-NVLRDKVTGQSKGKIFEAA-FLKIARAAIEPQK 89 (91)
Q Consensus 24 ~~~~~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~-~~~~~~~tg~~~g~afv~~-~~~~a~~Ai~~~n 89 (91)
....++|||+|||+++++++|+++|++||.|..+ .++.++.+| .|||+| +.++|++||..+|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~----~afV~f~~~~~a~~Ai~~l~ 75 (96)
T 2e44_A 12 RQRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETA----VVNVTYSSKDQARQALDKLN 75 (96)
T ss_dssp CCSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSE----EEEEEESSHHHHHHHHHHHT
T ss_pred CCCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCC----EEEEEECCHHHHHHHHHHhC
Confidence 3445789999999999999999999999999999 588887554 399998 5589999999876
No 171
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.68 E-value=1.3e-16 Score=98.99 Aligned_cols=59 Identities=19% Similarity=0.209 Sum_probs=53.3
Q ss_pred CCceEEEcCCC-CCCcHHHHHHHhhcCCCeeEEEEeecCCCCCcceEEEEEe-CHHHHHHHHhhcC
Q psy11978 26 DFIKMFVGQIP-RSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAA-FLKIARAAIEPQK 89 (91)
Q Consensus 26 ~~~~l~V~~L~-~~~t~~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~afv~~-~~~~a~~Ai~~~n 89 (91)
++++|||+||| +.+++++|+++|++||.|.+|+++.++ +|||||+| +.++|++||+.+|
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~~-----~g~afV~f~~~~~A~~Ai~~ln 63 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSK-----PGAAMVEMADGYAVDRAITHLN 63 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTTS-----TTCEEEEESSHHHHHHHHHHHT
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecCC-----CCEEEEEECCHHHHHHHHHHhC
Confidence 45799999999 899999999999999999999998753 79999998 5599999999887
No 172
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.68 E-value=4.6e-16 Score=90.03 Aligned_cols=57 Identities=12% Similarity=0.128 Sum_probs=49.8
Q ss_pred CceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCcceE-EEEEe-CHHHHHHHHhhcC
Q psy11978 27 FIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGK-IFEAA-FLKIARAAIEPQK 89 (91)
Q Consensus 27 ~~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~-afv~~-~~~~a~~Ai~~~n 89 (91)
...|||+||++.+++++|+++|++||.|.+|.++. + .|| |||+| +.++|++|++++|
T Consensus 25 vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~-~-----~Gf~aFVef~~~~~A~~A~~~Ln 83 (124)
T 2e5i_A 25 VLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFK-R-----NGIQAMVEFESVLCAQKAKAALN 83 (124)
T ss_dssp EEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEE-S-----SSEEEEEEESSHHHHHHHHHHHT
T ss_pred EEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEe-C-----CCCEEEEEECCHHHHHHHHHHhC
Confidence 34589999999999999999999999999999865 2 286 99999 4589999999887
No 173
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.68 E-value=2.1e-16 Score=98.05 Aligned_cols=61 Identities=28% Similarity=0.403 Sum_probs=55.8
Q ss_pred CceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCcceEEEEEe-CHHHHHHHHhhcC
Q psy11978 27 FIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAA-FLKIARAAIEPQK 89 (91)
Q Consensus 27 ~~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~afv~~-~~~~a~~Ai~~~n 89 (91)
..+|||+|||+.+++++|+++|+.||.|..++|+++. +.++|||||+| +.++|++||+++|
T Consensus 103 ~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~--~~~~g~~fV~f~~~~~a~~Ai~~ln 164 (213)
T 4f02_A 103 VGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMN 164 (213)
T ss_dssp TTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESSHHHHHHHHHHHT
T ss_pred cccceECCcccccHHHHHHHHHhhcCCeEEEEeeccC--CCCceEEEEEeCCHHHHHHHHHHhC
Confidence 4689999999999999999999999999999999986 45799999998 5599999999887
No 174
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.68 E-value=1.1e-16 Score=87.21 Aligned_cols=57 Identities=16% Similarity=0.203 Sum_probs=51.1
Q ss_pred CCceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCcceEEEEEe-CHHHHHHHHhhcC
Q psy11978 26 DFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAA-FLKIARAAIEPQK 89 (91)
Q Consensus 26 ~~~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~afv~~-~~~~a~~Ai~~~n 89 (91)
..++|||+|||+++++++|+++|++| .|..+.+. +++|||||+| +.++|++|++.+|
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~ 61 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFH 61 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhC
Confidence 45689999999999999999999999 99999884 5789999998 5589999999876
No 175
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=6.5e-16 Score=85.40 Aligned_cols=59 Identities=15% Similarity=0.186 Sum_probs=51.0
Q ss_pred CCCCCceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCcceEEEEEe-CHHHHHHHHhhcC
Q psy11978 23 PDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAA-FLKIARAAIEPQK 89 (91)
Q Consensus 23 ~~~~~~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~afv~~-~~~~a~~Ai~~~n 89 (91)
...+.++|||+|| ++++++|+++|++||.|..|.+. .++|||||+| +.++|++||+.+|
T Consensus 11 ~~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~ 70 (97)
T 1x5p_A 11 APRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELN 70 (97)
T ss_dssp CCCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTT
T ss_pred CCCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhC
Confidence 3445679999996 89999999999999999999884 4679999998 5589999998876
No 176
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.67 E-value=3e-16 Score=84.90 Aligned_cols=58 Identities=21% Similarity=0.352 Sum_probs=51.3
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHhhcC----C-------CeeEEEEeecCCCCCcceEEEEEe-CHHHHHHHHhhcC
Q psy11978 25 PDFIKMFVGQIPRSMDEADLTKMFSEY----G-------RVYNINVLRDKVTGQSKGKIFEAA-FLKIARAAIEPQK 89 (91)
Q Consensus 25 ~~~~~l~V~~L~~~~t~~~l~~~f~~~----G-------~i~~~~~~~~~~tg~~~g~afv~~-~~~~a~~Ai~~~n 89 (91)
.+.++|||+|||+++++++|+++|++| | .|.++.+..+ +|||||+| +.++|++|+ .+|
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~-~l~ 73 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFD 73 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHG-GGT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHH-hcC
Confidence 456799999999999999999999999 8 8999988654 69999998 559999999 776
No 177
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.66 E-value=4.6e-16 Score=99.62 Aligned_cols=63 Identities=17% Similarity=0.374 Sum_probs=55.8
Q ss_pred CCCCceEEEcCCCCCCcHHHHH----HHhhcCCCeeEEEEeecCCCCCcceEEEEEe-CHHHHHHHHhhcC
Q psy11978 24 DPDFIKMFVGQIPRSMDEADLT----KMFSEYGRVYNINVLRDKVTGQSKGKIFEAA-FLKIARAAIEPQK 89 (91)
Q Consensus 24 ~~~~~~l~V~~L~~~~t~~~l~----~~f~~~G~i~~~~~~~~~~tg~~~g~afv~~-~~~~a~~Ai~~~n 89 (91)
..+.++|||+|||+++++++|+ ++|+.||.|.+|.+++ +|+++|||||+| +.++|++||+.+|
T Consensus 6 ~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~ 73 (282)
T 3pgw_A 6 TRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQ 73 (282)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhc
Confidence 4556799999999999999976 8999999999998875 678999999998 5599999998876
No 178
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.65 E-value=7.6e-16 Score=98.15 Aligned_cols=63 Identities=25% Similarity=0.276 Sum_probs=58.0
Q ss_pred CCceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCcceEEEEEe-CHHHHHHHHhhcC
Q psy11978 26 DFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAA-FLKIARAAIEPQK 89 (91)
Q Consensus 26 ~~~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~afv~~-~~~~a~~Ai~~~n 89 (91)
+..+|||+|||+.+++++|+++|+.||.|..+.++.+. +|.++|||||+| +.++|.+||..+|
T Consensus 95 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~ 158 (261)
T 3sde_A 95 HGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDD-RGRATGKGFVEFAAKPPARKALERCG 158 (261)
T ss_dssp CSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET-TSCEEEEEEEEESSHHHHHHHHHHHH
T ss_pred cCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCC-CCCcCcEEEEEeCCHHHHHHHHHHhc
Confidence 45689999999999999999999999999999999995 999999999998 5599999999873
No 179
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.65 E-value=2.8e-16 Score=97.52 Aligned_cols=64 Identities=11% Similarity=0.028 Sum_probs=56.0
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHhhcCCCe--eEEEEeecCCCCCcceEEEEEe-CHHHHHHHHhhcCC
Q psy11978 25 PDFIKMFVGQIPRSMDEADLTKMFSEYGRV--YNINVLRDKVTGQSKGKIFEAA-FLKIARAAIEPQKA 90 (91)
Q Consensus 25 ~~~~~l~V~~L~~~~t~~~l~~~f~~~G~i--~~~~~~~~~~tg~~~g~afv~~-~~~~a~~Ai~~~n~ 90 (91)
++.++|||+|||+.+++++|+++|++||.| ..+.++.+. +..+|||||+| +.++|.+||..+|-
T Consensus 121 ~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~--~~~~g~gfV~f~~~~~A~~Ai~~lng 187 (205)
T 3tyt_A 121 HPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGK--SERSSSGLLEWDSKSDALETLGFLNH 187 (205)
T ss_dssp CCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCC--SSSSEEEEEECSSHHHHHHHHHHHTT
T ss_pred CCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCC--CCCceEEEEEeCCHHHHHHHHHHhCC
Confidence 345689999999999999999999999998 889888775 55679999998 55999999998873
No 180
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.65 E-value=1.3e-15 Score=97.61 Aligned_cols=65 Identities=22% Similarity=0.257 Sum_probs=59.8
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCcceEEEEEe-CHHHHHHHHhhcC
Q psy11978 25 PDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAA-FLKIARAAIEPQK 89 (91)
Q Consensus 25 ~~~~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~afv~~-~~~~a~~Ai~~~n 89 (91)
+...+|||+|||+.+++++|+++|+.||.|..+.++.++.+|.++|||||+| +.++|++|++.+|
T Consensus 93 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~ 158 (284)
T 3smz_A 93 PTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLL 158 (284)
T ss_dssp CCSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHT
T ss_pred CCCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhC
Confidence 3456899999999999999999999999999999999998999999999998 5599999998776
No 181
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.65 E-value=4.8e-16 Score=97.39 Aligned_cols=66 Identities=18% Similarity=0.247 Sum_probs=57.6
Q ss_pred CCCCCCCCCceEEEcCCCC-CCcHHHHHHHhhcCCCeeEEEEeecCCCCCcceEEEEEe-CHHHHHHHHhhcC
Q psy11978 19 LPEQPDPDFIKMFVGQIPR-SMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAA-FLKIARAAIEPQK 89 (91)
Q Consensus 19 ~~~~~~~~~~~l~V~~L~~-~~t~~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~afv~~-~~~~a~~Ai~~~n 89 (91)
.+..+.++.++|||+|||+ .+++++|+++|+.||.|.+|.++.++ +|||||+| +.++|++|++.+|
T Consensus 26 ~p~~~~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~ 93 (229)
T 2adc_A 26 IPGLAGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLN 93 (229)
T ss_dssp CGGGGCCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHT
T ss_pred CCCCCCCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhC
Confidence 3444556678999999999 99999999999999999999998876 79999998 5599999998765
No 182
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.62 E-value=7.2e-16 Score=102.12 Aligned_cols=60 Identities=12% Similarity=0.087 Sum_probs=52.5
Q ss_pred CCCCceEEEcC--CCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCcceEEEEEe-CHHHHHHHHhhcC
Q psy11978 24 DPDFIKMFVGQ--IPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAA-FLKIARAAIEPQK 89 (91)
Q Consensus 24 ~~~~~~l~V~~--L~~~~t~~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~afv~~-~~~~a~~Ai~~~n 89 (91)
+.++.+||||| |++.+|+++|+++|++||.|.+|.+.. +||||||+| +.++|++||+++|
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~ln 77 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLN 77 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTT
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhC
Confidence 45567999999 588999999999999999999887643 479999998 6699999999988
No 183
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.62 E-value=1.4e-15 Score=96.47 Aligned_cols=60 Identities=23% Similarity=0.257 Sum_probs=53.5
Q ss_pred CCCCceEEEcCCCCCC---------cHHHHHHHhhcCCCeeEEEEeecCCCCCcceEEEEEe-CHHHHHHHHhhcC
Q psy11978 24 DPDFIKMFVGQIPRSM---------DEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAA-FLKIARAAIEPQK 89 (91)
Q Consensus 24 ~~~~~~l~V~~L~~~~---------t~~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~afv~~-~~~~a~~Ai~~~n 89 (91)
....++||||||+..+ ++++|+++|++||.|.+|.++. ++|||||.| +.++|+.|++++|
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~------~kG~AFV~F~~~~~Ae~A~~am~ 200 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE------SKNCGFVKFKYQANAEFAKEAMS 200 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG------GGTEEEEEESSHHHHHHHHHHHT
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC------CCCEEEEEeCCHHHHHHHHHHhC
Confidence 4566899999999998 7999999999999999999985 479999998 5589999999886
No 184
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.61 E-value=6.5e-15 Score=82.89 Aligned_cols=65 Identities=12% Similarity=0.061 Sum_probs=54.7
Q ss_pred CCCceEEEcCCCC-----CCcHHHHHHHhhcCCCeeEEEEeecCCC-CCcceEEEEEe-CHHHHHHHHhhcC
Q psy11978 25 PDFIKMFVGQIPR-----SMDEADLTKMFSEYGRVYNINVLRDKVT-GQSKGKIFEAA-FLKIARAAIEPQK 89 (91)
Q Consensus 25 ~~~~~l~V~~L~~-----~~t~~~l~~~f~~~G~i~~~~~~~~~~t-g~~~g~afv~~-~~~~a~~Ai~~~n 89 (91)
.+++.|++.||.. +-++++|++.|++||.|.++.+++++.+ +.++|||||+| +.++|++|++++|
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~ln 77 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLN 77 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHT
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHC
Confidence 3456899999962 2368999999999999999999998754 68999999998 5589999999987
No 185
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.61 E-value=2.6e-15 Score=86.39 Aligned_cols=58 Identities=16% Similarity=0.187 Sum_probs=50.5
Q ss_pred CCCCceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCcceEEEEEe-CHHHHHHHHhhcC
Q psy11978 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAA-FLKIARAAIEPQK 89 (91)
Q Consensus 24 ~~~~~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~afv~~-~~~~a~~Ai~~~n 89 (91)
....++|||+|| ++++++|+++|++||.|..|.+. .++|||||+| +.++|++||+.+|
T Consensus 36 ~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~ln 94 (121)
T 2bz2_A 36 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELN 94 (121)
T ss_dssp CCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHT
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhC
Confidence 445679999995 69999999999999999999885 4679999998 5589999998876
No 186
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.60 E-value=5.8e-15 Score=94.57 Aligned_cols=64 Identities=17% Similarity=0.127 Sum_probs=58.6
Q ss_pred CCCceEEEcCCCCCC-cHHHHHHHhhcCCCeeEEEEeecCCCCCcceEEEEEe-CHHHHHHHHhhcC
Q psy11978 25 PDFIKMFVGQIPRSM-DEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAA-FLKIARAAIEPQK 89 (91)
Q Consensus 25 ~~~~~l~V~~L~~~~-t~~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~afv~~-~~~~a~~Ai~~~n 89 (91)
...++|||+|||+.+ ++++|+++|+.||.|..+.++.+. +|.++|||||+| +.++|.+|+..+|
T Consensus 182 ~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~ 247 (284)
T 3smz_A 182 LHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQ-DGQLKGFAVLEYETAEMAEEAQQQAD 247 (284)
T ss_dssp TSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECS-SCCEEEEEEEECSSHHHHHHHHHHHT
T ss_pred CCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECC-CCCcccEEEEEeCCHHHHHHHHHHhC
Confidence 456789999999995 999999999999999999999998 899999999998 5599999999876
No 187
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.60 E-value=2.8e-15 Score=96.39 Aligned_cols=65 Identities=15% Similarity=0.199 Sum_probs=57.4
Q ss_pred CCCCceEEEcCCCCC-CcHHHHHHHhhcCCCeeEEEEeecCC-CCCcceEEEEEe-CHHHHHHHHhhcC
Q psy11978 24 DPDFIKMFVGQIPRS-MDEADLTKMFSEYGRVYNINVLRDKV-TGQSKGKIFEAA-FLKIARAAIEPQK 89 (91)
Q Consensus 24 ~~~~~~l~V~~L~~~-~t~~~l~~~f~~~G~i~~~~~~~~~~-tg~~~g~afv~~-~~~~a~~Ai~~~n 89 (91)
....++|||+|||+. +++++|+++|+.||.|..+.++.+.. ||.++|||||+| +.++|++|+ ++|
T Consensus 207 ~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~ 274 (292)
T 2ghp_A 207 TLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMN 274 (292)
T ss_dssp CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGT
T ss_pred CCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-Hhc
Confidence 445679999999999 99999999999999999999999885 599999999998 559999999 876
No 188
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.60 E-value=5.3e-15 Score=81.59 Aligned_cols=54 Identities=20% Similarity=0.289 Sum_probs=45.7
Q ss_pred CCce-EEEcCCCCCCcHHH----HHHHhhcC-CCeeEEEEeecCCCCCcceEEEEEeC-HHHHHHHHhhcC
Q psy11978 26 DFIK-MFVGQIPRSMDEAD----LTKMFSEY-GRVYNINVLRDKVTGQSKGKIFEAAF-LKIARAAIEPQK 89 (91)
Q Consensus 26 ~~~~-l~V~~L~~~~t~~~----l~~~f~~~-G~i~~~~~~~~~~tg~~~g~afv~~~-~~~a~~Ai~~~n 89 (91)
+..+ |||+|||+.+++++ |+++|++| |.|.+| ++ |+|||.|. .++|++|++.+|
T Consensus 7 p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~ 67 (96)
T 2diu_A 7 GCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRME 67 (96)
T ss_dssp CSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHT
T ss_pred CcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhc
Confidence 3445 99999999999987 55899999 599887 34 99999994 599999999876
No 189
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.60 E-value=4.7e-15 Score=88.91 Aligned_cols=62 Identities=15% Similarity=0.183 Sum_probs=53.9
Q ss_pred CCCCCceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCcceEEEEEe-CHHHHHHHHhhcC
Q psy11978 23 PDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAA-FLKIARAAIEPQK 89 (91)
Q Consensus 23 ~~~~~~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~afv~~-~~~~a~~Ai~~~n 89 (91)
.....++|||+|||+.+++++|+++|+.||.|..+ ..++.++|||||+| +.++|++|++.+|
T Consensus 95 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~A~~A~~~l~ 157 (175)
T 1fje_B 95 KVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQ 157 (175)
T ss_dssp TTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-----CSSSSCCSEEEEECSSHHHHHHHHHHHT
T ss_pred ccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-----cCCCCCceEEEEEECCHHHHHHHHHHhC
Confidence 34456799999999999999999999999987665 45889999999998 5699999999876
No 190
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.58 E-value=6.7e-15 Score=94.58 Aligned_cols=64 Identities=17% Similarity=0.216 Sum_probs=53.2
Q ss_pred CCCCCceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCcceEEEEEe-CHHHHHHHHhhcC
Q psy11978 23 PDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAA-FLKIARAAIEPQK 89 (91)
Q Consensus 23 ~~~~~~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~afv~~-~~~~a~~Ai~~~n 89 (91)
.....++|||+|||+.+++++|+++|+.||.|..|.++.+..+ ++|||||+| +.++|++|++ +|
T Consensus 37 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~--~~g~afV~f~~~~~A~~A~~-~~ 101 (292)
T 2ghp_A 37 RNRELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKK--NFRFARIEFARYDGALAAIT-KT 101 (292)
T ss_dssp -----CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTS--SSEEEEEEESSHHHHHHHHT-TT
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCC--CcEEEEEEECCHHHHHHHHH-hC
Confidence 4556789999999999999999999999999999999998733 589999998 5599999995 44
No 191
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.58 E-value=8.2e-15 Score=93.36 Aligned_cols=61 Identities=23% Similarity=0.404 Sum_probs=53.5
Q ss_pred CCCCCceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCcceEEEEEe-CHHHHHHHHhhcC
Q psy11978 23 PDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAA-FLKIARAAIEPQK 89 (91)
Q Consensus 23 ~~~~~~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~afv~~-~~~~a~~Ai~~~n 89 (91)
.....++|||+|||+++|+++|+++|+.||.|..|.+.+ ++|||||.| +.++|+.|+..+|
T Consensus 18 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~------~kg~afV~f~~~~~A~~A~~~l~ 79 (261)
T 3sde_A 18 TYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINR------DRGFGFIRLESRTLAEIAKAELD 79 (261)
T ss_dssp SSCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHT
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCcEEEEEECCHHHHHHHHHHcC
Confidence 345567999999999999999999999999999999854 369999998 5599999998776
No 192
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.57 E-value=3.5e-16 Score=93.86 Aligned_cols=65 Identities=17% Similarity=0.136 Sum_probs=53.7
Q ss_pred CCCCCceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCcceEEEEEe-CHHHHHHHHhhcC
Q psy11978 23 PDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAA-FLKIARAAIEPQK 89 (91)
Q Consensus 23 ~~~~~~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~afv~~-~~~~a~~Ai~~~n 89 (91)
...+.++|||+|||+++++++|+++|..||.+.. .++.+..+|.++|||||+| +.++|++|++ +|
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~-~~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~ 74 (175)
T 1fje_B 9 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LT 74 (175)
T ss_dssp SCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GG
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEEECCCCccccEEEEEECCHHHHHHHHh-cC
Confidence 4556789999999999999999999999987655 3344445789999999998 5599999995 54
No 193
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.57 E-value=1.7e-14 Score=92.28 Aligned_cols=60 Identities=17% Similarity=0.264 Sum_probs=53.9
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCcceEEEEEe-CHHHHHHHHhhcC
Q psy11978 25 PDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAA-FLKIARAAIEPQK 89 (91)
Q Consensus 25 ~~~~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~afv~~-~~~~a~~Ai~~~n 89 (91)
...++|||+|||..+++++|+++|++||.|.++.++.++ +|||||+| +.++|++|++.+|
T Consensus 205 ~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~-----~g~afV~f~~~~~A~~A~~~l~ 265 (282)
T 3pgw_A 205 PPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR-----HDIAFVEFDNEVQAGAARDALQ 265 (282)
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC-----CcEEEEEeCCHHHHHHHHHHcC
Confidence 346789999999999999999999999999999998655 68999998 4599999999887
No 194
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.56 E-value=3.5e-15 Score=91.16 Aligned_cols=58 Identities=19% Similarity=0.242 Sum_probs=52.6
Q ss_pred CceEEEcCCCC-CCcHHHHHHHhhcCCCeeEEEEeecCCCCCcceEEEEEeC-HHHHHHHHhhcC
Q psy11978 27 FIKMFVGQIPR-SMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAAF-LKIARAAIEPQK 89 (91)
Q Consensus 27 ~~~l~V~~L~~-~~t~~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~afv~~~-~~~a~~Ai~~~n 89 (91)
.++|||+|||+ .+++++|+++|+.||.|.+|.++.++ +|||||+|. .++|++|++.+|
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~ 62 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLN 62 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHT
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhC
Confidence 46899999999 99999999999999999999998875 789999985 499999998765
No 195
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.49 E-value=8.1e-14 Score=85.05 Aligned_cols=60 Identities=22% Similarity=0.304 Sum_probs=53.1
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHhhcCC-CeeEEEEeecCCCCCcceEEEEEe-CHHHHHHHHhhcC
Q psy11978 25 PDFIKMFVGQIPRSMDEADLTKMFSEYG-RVYNINVLRDKVTGQSKGKIFEAA-FLKIARAAIEPQK 89 (91)
Q Consensus 25 ~~~~~l~V~~L~~~~t~~~l~~~f~~~G-~i~~~~~~~~~~tg~~~g~afv~~-~~~~a~~Ai~~~n 89 (91)
++.++|||+|||..+++++|+++|+.|| .|..+.++.+. +|||||+| +.++|++|++.+|
T Consensus 118 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~~-----~g~afV~f~~~~~A~~A~~~l~ 179 (198)
T 1qm9_A 118 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKD-----RKMALIQMGSVEEAVQALIDLH 179 (198)
T ss_dssp CCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESSTT-----SSCEEEECSSHHHHHHHHHHHT
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeCC-----CcEEEEEeCCHHHHHHHHHHhc
Confidence 3467899999999999999999999999 99999986643 79999998 5599999999876
No 196
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.49 E-value=9.9e-14 Score=82.70 Aligned_cols=57 Identities=21% Similarity=0.350 Sum_probs=48.2
Q ss_pred CCceEEEcCCCCCCcHHHHHHHhhcC----C-------CeeEEEEeecCCCCCcceEEEEEe-CHHHHHHHHhhcC
Q psy11978 26 DFIKMFVGQIPRSMDEADLTKMFSEY----G-------RVYNINVLRDKVTGQSKGKIFEAA-FLKIARAAIEPQK 89 (91)
Q Consensus 26 ~~~~l~V~~L~~~~t~~~l~~~f~~~----G-------~i~~~~~~~~~~tg~~~g~afv~~-~~~~a~~Ai~~~n 89 (91)
+.++|||+|||+++++++|+++|++| | .|.++.+. .++|||||+| +.++|++|+ .+|
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~------~~~g~afV~f~~~~~A~~A~-~~~ 71 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN------QDKNFAFLEFRSVDETTQAM-AFD 71 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEE------TTTTEEEEEESSHHHHHHHG-GGT
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEec------CCCCEEEEEeCCHHHHHHHH-HhC
Confidence 45799999999999999999999999 6 66666653 3579999998 569999999 665
No 197
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.49 E-value=1.4e-14 Score=81.41 Aligned_cols=57 Identities=14% Similarity=0.269 Sum_probs=49.2
Q ss_pred EcCCCCCCcHHHHHHHh------------hcCCCeeEEEEeecCCCCCcceEEEEEe-CHHHHHHHHhhcC
Q psy11978 32 VGQIPRSMDEADLTKMF------------SEYGRVYNINVLRDKVTGQSKGKIFEAA-FLKIARAAIEPQK 89 (91)
Q Consensus 32 V~~L~~~~t~~~l~~~f------------~~~G~i~~~~~~~~~~tg~~~g~afv~~-~~~~a~~Ai~~~n 89 (91)
+.+||+.+++++|++.| ++||.|.+|.++++. +++++|||||+| +.++|++|+.++|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~-~~~~~G~~fV~f~~~~~A~~A~~~ln 89 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNL-GDHLVGNVYVKFRREEDAEKAVIDLN 89 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSS-SSSSEEEEEEEESCHHHHHHHHHHHT
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCC-CCCccEEEEEEECCHHHHHHHHHHHC
Confidence 56788888888777666 999999999999887 589999999998 5589999999887
No 198
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.48 E-value=1.6e-13 Score=85.85 Aligned_cols=60 Identities=22% Similarity=0.304 Sum_probs=52.7
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHhhcCC-CeeEEEEeecCCCCCcceEEEEEe-CHHHHHHHHhhcC
Q psy11978 25 PDFIKMFVGQIPRSMDEADLTKMFSEYG-RVYNINVLRDKVTGQSKGKIFEAA-FLKIARAAIEPQK 89 (91)
Q Consensus 25 ~~~~~l~V~~L~~~~t~~~l~~~f~~~G-~i~~~~~~~~~~tg~~~g~afv~~-~~~~a~~Ai~~~n 89 (91)
++.++|||+|||+.+++++|+++|+.|| .|..+.++.+ .+|||||+| +.++|++|++.+|
T Consensus 149 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~l~ 210 (229)
T 2adc_A 149 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLH 210 (229)
T ss_dssp CSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSS-----STTCEEEEESSHHHHHHHHHHHT
T ss_pred CCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEEC-----CCcEEEEEECCHHHHHHHHHHHC
Confidence 3457899999999999999999999999 9999998653 369999998 5599999999876
No 199
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.46 E-value=7.9e-13 Score=74.78 Aligned_cols=63 Identities=16% Similarity=0.148 Sum_probs=50.6
Q ss_pred CCCCCceEEEcCCCCCCc-----------HHHHHHHhhcCCCeeEEEEeecCCCCCcceEEEEEe-CHHHHHHHHhhcC
Q psy11978 23 PDPDFIKMFVGQIPRSMD-----------EADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAA-FLKIARAAIEPQK 89 (91)
Q Consensus 23 ~~~~~~~l~V~~L~~~~t-----------~~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~afv~~-~~~~a~~Ai~~~n 89 (91)
.+.+.++|+|.||..... +++|+++|++||.|..|.| .++ .++|||||+| +.++|++||..+|
T Consensus 11 ~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~ln 85 (112)
T 2dit_A 11 RMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTLD 85 (112)
T ss_dssp CCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHST
T ss_pred CCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHcC
Confidence 344567899999944432 5799999999999999965 554 3799999998 5689999999887
No 200
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.44 E-value=2.4e-13 Score=82.61 Aligned_cols=57 Identities=21% Similarity=0.347 Sum_probs=47.0
Q ss_pred CCceEEEcCCCCCCcHHHHHHHhhcC----C-------CeeEEEEeecCCCCCcceEEEEEeC-HHHHHHHHhhcC
Q psy11978 26 DFIKMFVGQIPRSMDEADLTKMFSEY----G-------RVYNINVLRDKVTGQSKGKIFEAAF-LKIARAAIEPQK 89 (91)
Q Consensus 26 ~~~~l~V~~L~~~~t~~~l~~~f~~~----G-------~i~~~~~~~~~~tg~~~g~afv~~~-~~~a~~Ai~~~n 89 (91)
..++|||+|||+++++++|+++|+.| | .|.++.+ +.++|||||+|. .++|++|+ .+|
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~------~~~~g~afV~F~~~~~A~~Al-~l~ 71 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI------NQDKNFAFLEFRSVDETTQAM-AFD 71 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE------ETTTTEEEEEESCSHHHHHHG-GGT
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe------cCCCCEEEEEeCCHHHHHHHH-Hhc
Confidence 35799999999999999999999999 5 5555554 456899999984 59999999 665
No 201
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.42 E-value=5.1e-13 Score=75.08 Aligned_cols=64 Identities=20% Similarity=0.183 Sum_probs=52.3
Q ss_pred CCceEEEcCC--CCCCc--------HHHHHHHhhcCCCeeEEEEeecCCC--CCcceEEEEEe-CHHHHHHHHhhcC
Q psy11978 26 DFIKMFVGQI--PRSMD--------EADLTKMFSEYGRVYNINVLRDKVT--GQSKGKIFEAA-FLKIARAAIEPQK 89 (91)
Q Consensus 26 ~~~~l~V~~L--~~~~t--------~~~l~~~f~~~G~i~~~~~~~~~~t--g~~~g~afv~~-~~~~a~~Ai~~~n 89 (91)
+++.|.+.|+ |..+. +++|++.|++||.|.++.|++++.+ +.++||+||+| +.++|++|++++|
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~ln 80 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLT 80 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhC
Confidence 4567888887 33332 3689999999999999999998754 46899999998 4589999999987
No 202
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.42 E-value=3.6e-12 Score=71.08 Aligned_cols=48 Identities=19% Similarity=0.312 Sum_probs=41.7
Q ss_pred CCCcHHHHHHHhhcCCCeeEEEEeecCCCCCcceEEEEEe-CHHHHHHHHhhcC
Q psy11978 37 RSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAA-FLKIARAAIEPQK 89 (91)
Q Consensus 37 ~~~t~~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~afv~~-~~~~a~~Ai~~~n 89 (91)
..+++++|+++|++||.|.+|.|+ ++++|||||+| +.++|+.||+.++
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~~ 75 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQNEV 75 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHTCC
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHhcC
Confidence 458999999999999999999987 36799999998 5589999998643
No 203
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.40 E-value=1.5e-12 Score=74.63 Aligned_cols=64 Identities=17% Similarity=0.248 Sum_probs=53.0
Q ss_pred CCceEEEcCCCC--CC---cHHHHHHHhhcCCCeeEEEEeecCC----CCCcceEEEEEe-CHHHHHHHHhhcC
Q psy11978 26 DFIKMFVGQIPR--SM---DEADLTKMFSEYGRVYNINVLRDKV----TGQSKGKIFEAA-FLKIARAAIEPQK 89 (91)
Q Consensus 26 ~~~~l~V~~L~~--~~---t~~~l~~~f~~~G~i~~~~~~~~~~----tg~~~g~afv~~-~~~~a~~Ai~~~n 89 (91)
+++.|++.|+-. ++ -+++|++.|++||.|.+|.|++++. ++.++||+||+| +.++|++|++++|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~Ln 92 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALN 92 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHC
Confidence 456899999832 22 3689999999999999999999864 467889999998 5589999999987
No 204
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.33 E-value=3.2e-12 Score=73.45 Aligned_cols=61 Identities=15% Similarity=-0.009 Sum_probs=53.4
Q ss_pred CCCCCceEEEcCCCCC-CcHHHHHHHhhcCCCeeEEEEeecCCCCCcceEEEEEeCH--HHHHHHHhhcC
Q psy11978 23 PDPDFIKMFVGQIPRS-MDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAAFL--KIARAAIEPQK 89 (91)
Q Consensus 23 ~~~~~~~l~V~~L~~~-~t~~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~afv~~~~--~~a~~Ai~~~n 89 (91)
.-+.++-|||+||++. +++++|+++|++||.|..|.++++.. .|||.|.+ .+|..|+.++|
T Consensus 14 ~~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln 77 (121)
T 1owx_A 14 EEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDAN 77 (121)
T ss_dssp SCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTT
T ss_pred cccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhh
Confidence 4566789999999999 99999999999999999999988873 49999954 78999999875
No 205
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.09 E-value=1.6e-10 Score=65.73 Aligned_cols=60 Identities=15% Similarity=0.192 Sum_probs=46.1
Q ss_pred CCceEEEcCCCCCC----------cHHHHHHHhhcCCCeeEEEEeecCCCCCcceEEEEEe-CHHHHHHHHhhcC
Q psy11978 26 DFIKMFVGQIPRSM----------DEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAA-FLKIARAAIEPQK 89 (91)
Q Consensus 26 ~~~~l~V~~L~~~~----------t~~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~afv~~-~~~~a~~Ai~~~n 89 (91)
+++.|.+.|+=..- -+++|++.|++||.|.++.+.++. ++||+||.| +.++|++|++++|
T Consensus 6 ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~ln 76 (114)
T 3s6e_A 6 ATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALH 76 (114)
T ss_dssp CCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHT
T ss_pred CCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhC
Confidence 34567777762211 135789999999999999986654 589999998 5589999999987
No 206
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.88 E-value=7.5e-09 Score=64.27 Aligned_cols=51 Identities=20% Similarity=0.244 Sum_probs=43.6
Q ss_pred CcHHHHHHHhhcCCCeeEEEEeecC----CCCCcceEEEEEe-CHHHHHHHHhhcC
Q psy11978 39 MDEADLTKMFSEYGRVYNINVLRDK----VTGQSKGKIFEAA-FLKIARAAIEPQK 89 (91)
Q Consensus 39 ~t~~~l~~~f~~~G~i~~~~~~~~~----~tg~~~g~afv~~-~~~~a~~Ai~~~n 89 (91)
-.+++|.+.|++||.|.++.++++. .++.++|++||+| +.++|++||+++|
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~ 196 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALN 196 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhc
Confidence 3567899999999999999998654 3558999999999 5589999999987
No 207
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.69 E-value=7.5e-08 Score=52.52 Aligned_cols=56 Identities=16% Similarity=0.231 Sum_probs=42.9
Q ss_pred CCCceEEEcCCC----CCCcH----HHHHHHhhcCCCeeEEEEeecCCCCCcceEEEEEeCH-HHHHHHHhhcC
Q psy11978 25 PDFIKMFVGQIP----RSMDE----ADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAAFL-KIARAAIEPQK 89 (91)
Q Consensus 25 ~~~~~l~V~~L~----~~~t~----~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~afv~~~~-~~a~~Ai~~~n 89 (91)
++..+|+|...+ ...-. .+|.+.|.+||.|..++++.++ +||+|.+ ++|.+||+ +|
T Consensus 5 Ppd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~-mn 69 (91)
T 2dnr_A 5 SSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--------MWVTFLEGSSALNVLS-LN 69 (91)
T ss_dssp CSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--------EEEEESSHHHHHHGGG-GT
T ss_pred CCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--------EEEEECChHHHHHHHh-cC
Confidence 344588887766 22323 5688999999999999998875 8999954 88999997 65
No 208
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.47 E-value=2.1e-07 Score=51.06 Aligned_cols=56 Identities=13% Similarity=0.211 Sum_probs=43.9
Q ss_pred CCCceEEEcCCCCC------CcH---HHHHHHhhcCCCeeEEEEeecCCCCCcceEEEEEeCH-HHHHHHHhhcC
Q psy11978 25 PDFIKMFVGQIPRS------MDE---ADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAAFL-KIARAAIEPQK 89 (91)
Q Consensus 25 ~~~~~l~V~~L~~~------~t~---~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~afv~~~~-~~a~~Ai~~~n 89 (91)
++..||+|..++.. .++ .+|.+.|.+||.+..++++.++ +||+|.+ ++|.+||+ +|
T Consensus 13 PpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~-ld 78 (95)
T 1ufw_A 13 PLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLD-VD 78 (95)
T ss_dssp CTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHH-GG
T ss_pred CCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHh-cC
Confidence 33458999888643 232 4688899999999999998886 9999955 89999998 65
No 209
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.86 E-value=0.00014 Score=40.06 Aligned_cols=52 Identities=21% Similarity=0.425 Sum_probs=41.6
Q ss_pred ceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCcceEEEEEe-CHHHHHHHHhhc
Q psy11978 28 IKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAA-FLKIARAAIEPQ 88 (91)
Q Consensus 28 ~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~afv~~-~~~~a~~Ai~~~ 88 (91)
+-+++ ..|..+...||.++|+.||.+ .|.++.|. -|||.| +.+.|..|+..+
T Consensus 17 HVf~l-~FP~ewKt~DI~~lFs~fggv-~I~WidDT-------sAlvvf~~~~~a~~al~~i 69 (100)
T 1whv_A 17 HVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDDT-------SAFVSLSQPEQVQIAVNTS 69 (100)
T ss_dssp SEEEE-ECCTTCCHHHHHHHHTTTCSC-CCEEEETT-------EEEEECSCHHHHHHHHHHH
T ss_pred eEEEE-eCChhhhhHHHHHHhhccCCE-EEEEEcCC-------eEEEEecCHHHHHHHHHhc
Confidence 34555 999999999999999999954 57888775 699987 457788777754
No 210
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=97.72 E-value=0.00024 Score=39.98 Aligned_cols=58 Identities=9% Similarity=-0.027 Sum_probs=48.1
Q ss_pred CCceEEEcCCCCCCcHHHHHHHhhcC-----CCeeEEEEeecCCCCCcceEEEEEeC-HHHHHHHHhhcC
Q psy11978 26 DFIKMFVGQIPRSMDEADLTKMFSEY-----GRVYNINVLRDKVTGQSKGKIFEAAF-LKIARAAIEPQK 89 (91)
Q Consensus 26 ~~~~l~V~~L~~~~t~~~l~~~f~~~-----G~i~~~~~~~~~~tg~~~g~afv~~~-~~~a~~Ai~~~n 89 (91)
..++|-+-+||..++++.++.+.+.+ |.+..+.+..|. |-|+|+|. ...|-+|.-++|
T Consensus 20 ~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH------~GAivef~d~~~AgKasLaL~ 83 (117)
T 2l9w_A 20 LETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDF------NGAIIIFRDSKFAAKMLMILN 83 (117)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTT------TEEEEECSCHHHHHHHHHHHS
T ss_pred CCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCC------CceEEEEccchhhHHHHhhcC
Confidence 35689999999999999999999999 999999998876 66999984 467777665554
No 211
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.62 E-value=0.00018 Score=39.63 Aligned_cols=51 Identities=22% Similarity=0.417 Sum_probs=40.4
Q ss_pred eEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCcceEEEEEeCH-HHHHHHHhhc
Q psy11978 29 KMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAAFL-KIARAAIEPQ 88 (91)
Q Consensus 29 ~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~afv~~~~-~~a~~Ai~~~ 88 (91)
-+++ +.|..+...||.++|+.|| -..|.++.|. -|||.|.. +.|..|+..+
T Consensus 8 V~~l-~FP~ewKt~Di~~lFs~fg-gv~I~WidDT-------sAlvvf~~~~~a~~al~~i 59 (101)
T 3ctr_A 8 VLHV-TFPKEWKTSDLYQLFSAFG-NIQISWIDDT-------SAFVSLSQPEQVKIAVNTS 59 (101)
T ss_dssp EEEE-ECCTTCCHHHHHHHTTTSE-EEEEEEEETT-------EEEEEEEEECHHHHHHHHH
T ss_pred EEEE-eCChhhhhHHHHHHHhccC-CEEEEEEcCC-------eEEEEecCHHHHHHHHHhc
Confidence 4555 9999999999999999999 4568888875 68888743 6777777754
No 212
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=97.28 E-value=0.0002 Score=49.27 Aligned_cols=56 Identities=11% Similarity=0.077 Sum_probs=39.8
Q ss_pred CceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCcceEEEEEeCH-HHHHHHHhhc
Q psy11978 27 FIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAAFL-KIARAAIEPQ 88 (91)
Q Consensus 27 ~~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~afv~~~~-~~a~~Ai~~~ 88 (91)
.++|||. .|..+++.+|.+.|++||.|.++.+-.+. .-|+.|+|.+ +++++++...
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~-----g~~~~vef~~~~~~~~~~~~~ 109 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF-----GLYAVVEFCQKESIGSLQNGT 109 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS-----SEEEEEECC---CCHHHHSSC
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC-----CeEEEEEeCCHHHHHHHHhcc
Confidence 3689997 79999999999999999999998775543 2699999976 5555555443
No 213
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.95 E-value=0.011 Score=32.82 Aligned_cols=55 Identities=16% Similarity=0.065 Sum_probs=41.4
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHhhc---C--CCeeEEEEeecCCCCCcceEEEEEeCH-HHHHHHHhh
Q psy11978 25 PDFIKMFVGQIPRSMDEADLTKMFSE---Y--GRVYNINVLRDKVTGQSKGKIFEAAFL-KIARAAIEP 87 (91)
Q Consensus 25 ~~~~~l~V~~L~~~~t~~~l~~~f~~---~--G~i~~~~~~~~~~tg~~~g~afv~~~~-~~a~~Ai~~ 87 (91)
....+|.|.|||..++++.|+-+|+. - |+|..+.... +-|+|+|.+ ..|+..++.
T Consensus 6 ~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~k 66 (104)
T 2dhx_A 6 SGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLAQ 66 (104)
T ss_dssp CCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHTC
T ss_pred cCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhcC
Confidence 34568999999999999999999986 2 5677665422 458999855 777777665
No 214
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=96.85 E-value=0.0015 Score=38.09 Aligned_cols=32 Identities=13% Similarity=0.078 Sum_probs=24.6
Q ss_pred EEEEeecCCCCCcceEEEEEe-CHHHHHHHHhhcC
Q psy11978 56 NINVLRDKVTGQSKGKIFEAA-FLKIARAAIEPQK 89 (91)
Q Consensus 56 ~~~~~~~~~tg~~~g~afv~~-~~~~a~~Ai~~~n 89 (91)
.+.++.+. .+++|||||+| +.++|++|++.+|
T Consensus 2 ~~kl~ln~--~~~~G~~fV~f~~~~~A~~al~~~~ 34 (158)
T 2kn4_A 2 QYKLILNG--KTLKGETTTEAVDAATAEKVFKQYA 34 (158)
T ss_dssp EEEEEEEC--SSCEEEEEEECSSHHHHHHHHHHHH
T ss_pred cEEEEecC--ccccchhHHHHHHHHhHHHHHHhhc
Confidence 35666665 36899999998 5699999997654
No 215
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=96.79 E-value=0.017 Score=31.28 Aligned_cols=59 Identities=5% Similarity=0.036 Sum_probs=41.7
Q ss_pred ceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCC--cceEEEEEeCH-HHHHHHHh
Q psy11978 28 IKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQ--SKGKIFEAAFL-KIARAAIE 86 (91)
Q Consensus 28 ~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~~~~~~~tg~--~~g~afv~~~~-~~a~~Ai~ 86 (91)
.+|-|++||+.+|++++.+.++....+.....+....+.+ ..+-|||.|.. ++...-.+
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~ 63 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRD 63 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHH
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHH
Confidence 4789999999999999999999888766555555543322 34568888854 55544433
No 216
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=95.56 E-value=0.091 Score=29.77 Aligned_cols=56 Identities=16% Similarity=0.108 Sum_probs=40.7
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCcceEEEEEe-CHHHHHHHHhh
Q psy11978 25 PDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAA-FLKIARAAIEP 87 (91)
Q Consensus 25 ~~~~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~afv~~-~~~~a~~Ai~~ 87 (91)
.....|.|-+.|... -..+-..|++||.|.+.... + ...+-.|.| +..+|++|+..
T Consensus 22 ~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~----~--~~NWihI~Y~s~~~A~rAL~k 78 (119)
T 1wwh_A 22 LDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMS----N--TGNWMHIRYQSKLQARKALSK 78 (119)
T ss_dssp GGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEEC----S--SSSEEEEEESSHHHHHHHHTT
T ss_pred CCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccC----C--CCCeEEEEeCCHHHHHHHHHh
Confidence 345678898988885 55677789999999887651 1 224666777 55899999975
No 217
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=95.30 E-value=0.11 Score=36.02 Aligned_cols=54 Identities=22% Similarity=0.394 Sum_probs=40.3
Q ss_pred CceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCcceEEEEEe-CHHHHHHHHhhcC
Q psy11978 27 FIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAA-FLKIARAAIEPQK 89 (91)
Q Consensus 27 ~~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~afv~~-~~~~a~~Ai~~~n 89 (91)
...++|+ +|..+...+|.++|+.||.+ +|+++.+. .|||.+ ..+.|..++.+++
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~widdt-------~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWIDDT-------SAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECSSS-------EEEEECSCHHHHHHHHHHHT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEcCC-------eEEEEECCHHHHHHHHHHHH
Confidence 3456665 88899999999999999954 56655543 589987 4578888887664
No 218
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=94.12 E-value=0.0096 Score=32.94 Aligned_cols=19 Identities=11% Similarity=0.330 Sum_probs=0.0
Q ss_pred CCCceEEEcCCCCCCcHHH
Q psy11978 25 PDFIKMFVGQIPRSMDEAD 43 (91)
Q Consensus 25 ~~~~~l~V~~L~~~~t~~~ 43 (91)
....+|||+|||+++|++.
T Consensus 95 ~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 95 KEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp -------------------
T ss_pred CCCCceEeCCCCCCccccc
Confidence 3445799999999999864
No 219
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=93.01 E-value=0.25 Score=26.94 Aligned_cols=57 Identities=4% Similarity=-0.006 Sum_probs=34.1
Q ss_pred CceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCC--CcceEEEEEeCH-HHHHH
Q psy11978 27 FIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTG--QSKGKIFEAAFL-KIARA 83 (91)
Q Consensus 27 ~~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~~~~~~~tg--~~~g~afv~~~~-~~a~~ 83 (91)
+.+|-|+.||+.+|++++.+.++..-.+.....+....+. ..-.-|||.|.. ++...
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~ 68 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILL 68 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHH
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHH
Confidence 4579999999999999988877765443221111111111 123467888844 44443
No 220
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=89.81 E-value=1.1 Score=24.70 Aligned_cols=55 Identities=11% Similarity=0.048 Sum_probs=36.2
Q ss_pred ceEEEcCCCCCC-cH----HHHHHHhhcCCCeeEEEEeecCCCCCcceEEEEEeCH-HHHHHHHhhc
Q psy11978 28 IKMFVGQIPRSM-DE----ADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAAFL-KIARAAIEPQ 88 (91)
Q Consensus 28 ~~l~V~~L~~~~-t~----~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~afv~~~~-~~a~~Ai~~~ 88 (91)
.+|+|.||+..+ .. +.++++|..|+++..-...+.- .-..|.|+. ++|.+|-..+
T Consensus 6 ntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSF------RRirv~F~~~~~A~~AR~~L 66 (104)
T 1wey_A 6 SGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSF------KRVRINFSNPLSAADARLRL 66 (104)
T ss_dssp CEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTT------TEEEEECSSTTHHHHHHHTS
T ss_pred ceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcc------eEEEEEeCChHHHHHHHHHh
Confidence 489999998876 22 4678999999988775554432 123455644 6666665443
No 221
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=69.60 E-value=6.5 Score=22.52 Aligned_cols=59 Identities=19% Similarity=0.223 Sum_probs=34.2
Q ss_pred ceEEEcCCCCCCcHHHHHHHhhcCCCeeE-EEEeec--------CCCCC-----cceEEEEEe-CHHHHHHHHhh
Q psy11978 28 IKMFVGQIPRSMDEADLTKMFSEYGRVYN-INVLRD--------KVTGQ-----SKGKIFEAA-FLKIARAAIEP 87 (91)
Q Consensus 28 ~~l~V~~L~~~~t~~~l~~~f~~~G~i~~-~~~~~~--------~~tg~-----~~g~afv~~-~~~~a~~Ai~~ 87 (91)
..|.|-+.|.+.+. .+-+.|++||.|.+ .....+ +.+.+ ...+-.|.| +..+|++|+..
T Consensus 8 ~~VtVFGFp~~~~~-~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~ 81 (132)
T 3p3d_A 8 LAILVFGYPETMAN-QVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLE 81 (132)
T ss_dssp CEEEEECCCGGGHH-HHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTT
T ss_pred eEEEEEecCHHHHH-HHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHh
Confidence 36777787766544 45678899999865 211110 00011 123446677 45888998865
No 222
>2g1d_A 30S ribosomal protein S24E; complete proteome, ribosome; NMR {Thermoplasma acidophilum} SCOP: d.12.1.3
Probab=64.88 E-value=5.8 Score=21.52 Aligned_cols=46 Identities=9% Similarity=0.074 Sum_probs=24.3
Q ss_pred CCCcHHHHHHHhhc-CC---CeeEEEEeec-CCCCCcceEEEEEeCHHHHHH
Q psy11978 37 RSMDEADLTKMFSE-YG---RVYNINVLRD-KVTGQSKGKIFEAAFLKIARA 83 (91)
Q Consensus 37 ~~~t~~~l~~~f~~-~G---~i~~~~~~~~-~~tg~~~g~afv~~~~~~a~~ 83 (91)
...+..++++-+.. |+ .+..|.=++. -..|++.|||.| +++.++.+
T Consensus 29 ~tpsk~eirekLA~~~~~~~~~vvv~~~~t~fG~gks~G~a~I-Yds~e~~k 79 (98)
T 2g1d_A 29 RTPSREEIKELIAKHEGVDKELVIVDNNKQLTGKHEIEGYTKI-YADKPSAM 79 (98)
T ss_dssp SCCCHHHHHHHHHHHHHSCSTTEECCCCCCCSSSSEEEEEEEE-ESHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHH
Confidence 35567777765543 33 2222222222 234678899998 66544443
No 223
>3mfb_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.20A {Erwinia carotovora}
Probab=64.34 E-value=19 Score=21.20 Aligned_cols=37 Identities=19% Similarity=0.270 Sum_probs=28.5
Q ss_pred CcHHHHHHHhhcCCCe---eEEEEeecCCCCCcceEEEEE
Q psy11978 39 MDEADLTKMFSEYGRV---YNINVLRDKVTGQSKGKIFEA 75 (91)
Q Consensus 39 ~t~~~l~~~f~~~G~i---~~~~~~~~~~tg~~~g~afv~ 75 (91)
.|+++|+++=.+.|.+ .+..+..+..+|+.+.+||-+
T Consensus 3 ~t~~~L~~~A~~~gta~trVR~~~~~de~~G~~~v~gv~T 42 (157)
T 3mfb_A 3 LTPEKLLEAANKQGTVPSRVRYQWMEDEETGRLKAVGYHT 42 (157)
T ss_dssp CCHHHHHHHHHTTCEEEBSEEEEEEECTTTCCEEEEEEEC
T ss_pred cCHHHHHHHHHhCCcccccEEEEEEecCCCCcEEEEEEEC
Confidence 5889999999888876 345566664489999998864
No 224
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=63.01 E-value=1.7 Score=25.22 Aligned_cols=26 Identities=15% Similarity=0.077 Sum_probs=13.6
Q ss_pred HHHHHhhcCCCeeEEEEeecCCCCCcceEEEEEe
Q psy11978 43 DLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAA 76 (91)
Q Consensus 43 ~l~~~f~~~G~i~~~~~~~~~~tg~~~g~afv~~ 76 (91)
++.++|...|.|+ +... .+|||||..
T Consensus 3 ~~~~l~~~~G~Vk---wfn~-----~kGfGFI~~ 28 (148)
T 3ts2_A 3 DEPQLLHGAGICK---WFNV-----RMGFGFLSM 28 (148)
T ss_dssp ---CCEEEEEEEE---EEET-----TTTEEEEEE
T ss_pred cccccccceeEEE---EEEC-----CCCeeEEee
Confidence 4445555555443 3333 379999974
No 225
>1xn9_A 30S ribosomal protein S24E; beta+alpha, GFT structural genomics, protein structure initiative, PSI, NESG, MAR11; NMR {Methanosarcina mazei} SCOP: d.12.1.3
Probab=61.60 E-value=17 Score=19.70 Aligned_cols=43 Identities=12% Similarity=0.005 Sum_probs=25.3
Q ss_pred CCCcHHHHHHHhhc-CC---CeeEEEEeec-CCCCCcceEEEEEeCHHH
Q psy11978 37 RSMDEADLTKMFSE-YG---RVYNINVLRD-KVTGQSKGKIFEAAFLKI 80 (91)
Q Consensus 37 ~~~t~~~l~~~f~~-~G---~i~~~~~~~~-~~tg~~~g~afv~~~~~~ 80 (91)
...+..++++.+.+ |+ .+..|.=++. -..|++.|||.| +++.+
T Consensus 28 ~tpsk~eirekLAk~~~~~~~~Vvv~~~~t~fG~gkstG~a~I-Yds~e 75 (101)
T 1xn9_A 28 STPSRNDVRNKLAAMLNAPLELLVIQRIKTEYGMQESKGYAKL-YEDAD 75 (101)
T ss_dssp SCCCHHHHHHHHHHHTTCCTTTEEEEEEEECSSSSEEEEEEEE-CSCHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHH
Confidence 45677777765543 43 3444443333 345788999999 54433
No 226
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=60.63 E-value=8.6 Score=24.37 Aligned_cols=34 Identities=18% Similarity=0.361 Sum_probs=26.4
Q ss_pred ceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeec
Q psy11978 28 IKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRD 62 (91)
Q Consensus 28 ~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~~~~~ 62 (91)
..+.|+|||+.++..-|..++.. +.+....++..
T Consensus 111 ~~~iv~NlPy~iss~il~~ll~~-~~~~~~~lm~Q 144 (271)
T 3fut_A 111 GSLLVANLPYHIATPLVTRLLKT-GRFARLVFLVQ 144 (271)
T ss_dssp TEEEEEEECSSCCHHHHHHHHHH-CCEEEEEEEEE
T ss_pred ccEEEecCcccccHHHHHHHhcC-CCCCEEEEEee
Confidence 35789999999999999998877 66666555443
No 227
>3ulj_A LIN28B, DNA-binding protein; beta barrel, cold shock domain fold, nucleic acid binding, D binding protein; 1.06A {Silurana} PDB: 4a4i_A
Probab=57.19 E-value=10 Score=20.15 Aligned_cols=8 Identities=25% Similarity=0.110 Sum_probs=6.5
Q ss_pred cceEEEEE
Q psy11978 68 SKGKIFEA 75 (91)
Q Consensus 68 ~~g~afv~ 75 (91)
.|||+||+
T Consensus 19 ~KGfGFI~ 26 (90)
T 3ulj_A 19 RMGFGFIS 26 (90)
T ss_dssp TTTEEEEE
T ss_pred CCCeEEeE
Confidence 37999995
No 228
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}
Probab=56.20 E-value=3.9 Score=26.05 Aligned_cols=34 Identities=15% Similarity=0.214 Sum_probs=26.3
Q ss_pred eEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeec
Q psy11978 29 KMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRD 62 (91)
Q Consensus 29 ~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~~~~~ 62 (91)
...|+|||+.++..-|..++.....+..+.++..
T Consensus 116 ~~vv~NlPY~iss~il~~ll~~~~~~~~~~~m~Q 149 (279)
T 3uzu_A 116 LRIIGNLPYNISSPLLFHLMSFAPVVIDQHFMLQ 149 (279)
T ss_dssp EEEEEECCHHHHHHHHHHHGGGGGGEEEEEEEEE
T ss_pred eEEEEccCccccHHHHHHHHhccCCccEEEEEee
Confidence 5789999999999999999876555666555444
No 229
>2k5n_A Putative cold-shock protein; GFT protein structure, PSI, nesgc, OB fold, cold shock structural genomics; NMR {Pectobacterium atrosepticum}
Probab=55.11 E-value=12 Score=19.01 Aligned_cols=9 Identities=33% Similarity=0.228 Sum_probs=6.9
Q ss_pred cceEEEEEe
Q psy11978 68 SKGKIFEAA 76 (91)
Q Consensus 68 ~~g~afv~~ 76 (91)
.+|||||.-
T Consensus 13 ~KGfGFI~~ 21 (74)
T 2k5n_A 13 DKGFGFIKD 21 (74)
T ss_dssp TTTEEEEEE
T ss_pred CCCeEEEec
Confidence 379999963
No 230
>2kcm_A Cold shock domain family protein; nucleic acid binding protein, beta barrel, structural genomi 2, protein structure initiative; NMR {Shewanella oneidensis}
Probab=52.33 E-value=14 Score=18.75 Aligned_cols=9 Identities=22% Similarity=0.047 Sum_probs=7.1
Q ss_pred cceEEEEEe
Q psy11978 68 SKGKIFEAA 76 (91)
Q Consensus 68 ~~g~afv~~ 76 (91)
.+|||||.-
T Consensus 11 ~KGfGFI~~ 19 (74)
T 2kcm_A 11 AKKYGFIQG 19 (74)
T ss_dssp TTTEEEEEE
T ss_pred CCCEEEEec
Confidence 379999964
No 231
>1c9o_A CSPB, cold-shock protein; beta barrel, homodimer, transcription; 1.17A {Bacillus caldolyticus} SCOP: b.40.4.5 PDB: 2hax_A 1hz9_A 1hzb_A 1i5f_A 1hza_A 1hzc_A 3pf4_A 1csq_A 1nmf_A 1nmg_A 1csp_A 2f52_A 2es2_A 3pf5_A 2i5m_X 2i5l_X
Probab=51.68 E-value=15 Score=18.02 Aligned_cols=9 Identities=33% Similarity=0.290 Sum_probs=6.9
Q ss_pred cceEEEEEe
Q psy11978 68 SKGKIFEAA 76 (91)
Q Consensus 68 ~~g~afv~~ 76 (91)
.+|||||.-
T Consensus 12 ~kGfGFI~~ 20 (66)
T 1c9o_A 12 EKGYGFIEV 20 (66)
T ss_dssp TTTEEEEEE
T ss_pred CCCeEEEec
Confidence 379999963
No 232
>3cam_A Cold-shock domain family protein; cold shock protein, chain SWAP, STRU genomics, oxford protein production facility, OPPF, gene RE; 2.60A {Neisseria meningitidis MC58}
Probab=51.60 E-value=15 Score=18.14 Aligned_cols=9 Identities=33% Similarity=0.309 Sum_probs=6.9
Q ss_pred cceEEEEEe
Q psy11978 68 SKGKIFEAA 76 (91)
Q Consensus 68 ~~g~afv~~ 76 (91)
.+|||||.-
T Consensus 12 ~kGfGFI~~ 20 (67)
T 3cam_A 12 AKGFGFITP 20 (67)
T ss_dssp TTTEEEEEE
T ss_pred CCCeEEEec
Confidence 379999963
No 233
>3a0j_A Cold shock protein; OB-fold, cytoplasm, transcription, structural genomics, NPPSFA; 1.65A {Thermus thermophilus}
Probab=50.69 E-value=15 Score=18.41 Aligned_cols=9 Identities=33% Similarity=0.265 Sum_probs=6.9
Q ss_pred cceEEEEEe
Q psy11978 68 SKGKIFEAA 76 (91)
Q Consensus 68 ~~g~afv~~ 76 (91)
.+|||||.-
T Consensus 12 ~kGfGFI~~ 20 (73)
T 3a0j_A 12 EKGYGFIER 20 (73)
T ss_dssp TTTEEEEEC
T ss_pred CCCEEEEec
Confidence 379999963
No 234
>2i9x_A Putative septation protein spovg; APC86317.1, staphylococcus epidermidis ATCC 12228, ST genomics, PSI-2, protein structure initiative; 1.80A {Staphylococcus epidermidis} SCOP: d.366.1.1
Probab=50.36 E-value=27 Score=18.42 Aligned_cols=25 Identities=12% Similarity=0.143 Sum_probs=16.5
Q ss_pred CeeEEEEeecCCCCCcceEEEEEeC
Q psy11978 53 RVYNINVLRDKVTGQSKGKIFEAAF 77 (91)
Q Consensus 53 ~i~~~~~~~~~~tg~~~g~afv~~~ 77 (91)
+|.++++-.-...|+.+|||-|+|+
T Consensus 5 ~iTdVri~~~~~~g~lka~asVt~d 29 (87)
T 2i9x_A 5 KVTDVRLRKIQTDGRMKALVSITLD 29 (87)
T ss_dssp CEEEEEEEECCSSSSEEEEEEEEET
T ss_pred EEEEEEEEEcCCCCCEEEEEEEEEC
Confidence 3556666554546788888888764
No 235
>1h95_A CSD, Y-box binding protein; translation factor, transcription factor, OB-fold, 5- stranded anti-parallel beta-barrel, single stranded DNA binding; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=49.77 E-value=16 Score=18.68 Aligned_cols=9 Identities=22% Similarity=0.150 Sum_probs=7.1
Q ss_pred cceEEEEEe
Q psy11978 68 SKGKIFEAA 76 (91)
Q Consensus 68 ~~g~afv~~ 76 (91)
.+|||||.-
T Consensus 19 ~kGfGFI~~ 27 (79)
T 1h95_A 19 RNGYGFINR 27 (79)
T ss_dssp TTTEEEEEE
T ss_pred CCCcEEEec
Confidence 479999963
No 236
>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0
Probab=48.92 E-value=4.2 Score=25.49 Aligned_cols=33 Identities=18% Similarity=0.380 Sum_probs=25.3
Q ss_pred EEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeec
Q psy11978 30 MFVGQIPRSMDEADLTKMFSEYGRVYNINVLRD 62 (91)
Q Consensus 30 l~V~~L~~~~t~~~l~~~f~~~G~i~~~~~~~~ 62 (91)
..|+|||+.++...|..++...+.+....++..
T Consensus 99 ~vv~NlPY~is~~il~~ll~~~~~~~~~~lm~Q 131 (255)
T 3tqs_A 99 RVVGNLPYNISTPLLFHLFSQIHCIEDMHFMLQ 131 (255)
T ss_dssp EEEEECCHHHHHHHHHHHHHTGGGEEEEEEEEE
T ss_pred EEEecCCcccCHHHHHHHHhCCCChheEEEEEe
Confidence 478999999999999999886655655555443
No 237
>2ia9_A Putative septation protein spovg; APC85465, bacillus subtilis subsp. subtilis STR. 168, structural genomics, PSI-2; 3.00A {Bacillus subtilis} SCOP: d.366.1.1
Probab=47.92 E-value=32 Score=18.63 Aligned_cols=25 Identities=12% Similarity=0.084 Sum_probs=16.3
Q ss_pred CeeEEEEeecCCCCCcceEEEEEeC
Q psy11978 53 RVYNINVLRDKVTGQSKGKIFEAAF 77 (91)
Q Consensus 53 ~i~~~~~~~~~~tg~~~g~afv~~~ 77 (91)
+|.++++-.-...|+.++||-|+|+
T Consensus 5 ~ITdVri~~i~~~gklkA~aSVt~d 29 (100)
T 2ia9_A 5 EVTDVRLRRVNTDGRMRAIASITLD 29 (100)
T ss_dssp CEEEEEEEECCSSSSEEEEEEEEET
T ss_pred EEEEEEEEEcCCCCCEEEEEEEEEC
Confidence 3556666554445778888887764
No 238
>3h7h_B Transcription elongation factor SPT5; helices surrounding beta sheet, activator, ME binding, nucleus, repressor, transcription regulation; 1.55A {Homo sapiens}
Probab=47.42 E-value=29 Score=18.84 Aligned_cols=21 Identities=33% Similarity=0.300 Sum_probs=16.7
Q ss_pred cceEEEEEe-CHHHHHHHHhhc
Q psy11978 68 SKGKIFEAA-FLKIARAAIEPQ 88 (91)
Q Consensus 68 ~~g~afv~~-~~~~a~~Ai~~~ 88 (91)
.+||-||+. ...+...||+.+
T Consensus 50 lkGyIyVEA~~~~~V~~ai~gi 71 (106)
T 3h7h_B 50 VKGYIYVEAYKQTHVKQAIEGV 71 (106)
T ss_dssp CCSEEEEEESSHHHHHHHHTTC
T ss_pred CceEEEEEeCCHHHHHHHHhcc
Confidence 689999996 557888888754
No 239
>1g6p_A Cold shock protein TMCSP; greek-KEY, beta barrel, OB-fold, structural genomics; NMR {Thermotoga maritima} SCOP: b.40.4.5
Probab=47.32 E-value=19 Score=17.62 Aligned_cols=9 Identities=33% Similarity=0.290 Sum_probs=7.0
Q ss_pred cceEEEEEe
Q psy11978 68 SKGKIFEAA 76 (91)
Q Consensus 68 ~~g~afv~~ 76 (91)
.+|||||.-
T Consensus 11 ~kGfGFI~~ 19 (66)
T 1g6p_A 11 KKGYGFITK 19 (66)
T ss_dssp TTTEEEEEE
T ss_pred CCCEEEEec
Confidence 379999964
No 240
>2i9z_A Putative septation protein spovg; APC86317, staphylococcus epidermidis ATCC 12228, STRU genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus epidermidis} SCOP: d.366.1.1
Probab=46.94 E-value=34 Score=18.70 Aligned_cols=25 Identities=12% Similarity=0.143 Sum_probs=16.2
Q ss_pred CeeEEEEeecCCCCCcceEEEEEeC
Q psy11978 53 RVYNINVLRDKVTGQSKGKIFEAAF 77 (91)
Q Consensus 53 ~i~~~~~~~~~~tg~~~g~afv~~~ 77 (91)
+|.++++-.-...|+.+|||-|+|+
T Consensus 5 ~iTdVri~~i~~~gklkA~aSVt~d 29 (105)
T 2i9z_A 5 KVTDVRLRKIQTDGRMKALVSITLD 29 (105)
T ss_dssp CEEEEEEEECCSCSSEEEEEEEEET
T ss_pred EEEEEEEEEeCCCCCEEEEEEEEEC
Confidence 3555666444446778888887764
No 241
>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A
Probab=45.23 E-value=25 Score=21.86 Aligned_cols=30 Identities=13% Similarity=0.305 Sum_probs=21.8
Q ss_pred eEEEcCCCCCCcHHHHHHHhhcCCCeeEEE
Q psy11978 29 KMFVGQIPRSMDEADLTKMFSEYGRVYNIN 58 (91)
Q Consensus 29 ~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~ 58 (91)
.+.|+|||+.++...+..++.....+....
T Consensus 92 ~~vvsNlPY~i~~~il~~ll~~~~~~~~~~ 121 (252)
T 1qyr_A 92 LRVFGNLPYNISTPLMFHLFSYTDAIADMH 121 (252)
T ss_dssp EEEEEECCTTTHHHHHHHHHTTGGGEEEEE
T ss_pred eEEEECCCCCccHHHHHHHHhcCCCcceEE
Confidence 578999999999988887776433344433
No 242
>1ywx_A 30S ribosomal protein S24E; GFT MRR16, nesgc, structural genomics, PSI, protein structure initiative; NMR {Methanococcus maripaludis} SCOP: d.12.1.3
Probab=45.08 E-value=37 Score=18.46 Aligned_cols=44 Identities=11% Similarity=-0.055 Sum_probs=25.2
Q ss_pred CCCcHHHHHHHhhc-CC---CeeEEEEee-cCCCCCcceEEEEEeCHHH
Q psy11978 37 RSMDEADLTKMFSE-YG---RVYNINVLR-DKVTGQSKGKIFEAAFLKI 80 (91)
Q Consensus 37 ~~~t~~~l~~~f~~-~G---~i~~~~~~~-~~~tg~~~g~afv~~~~~~ 80 (91)
...+..++++-+.+ |+ .+..|.-++ .-..|++.|||.|.-+.+.
T Consensus 28 ~tpsk~eirekLAk~~~~~~d~Vvv~~~~T~fG~gkstG~a~IYds~e~ 76 (102)
T 1ywx_A 28 ATPSIKDVKMKLVAVLNANKQVLVVDTLDQIFGKLEAEGYAKIYNDEKA 76 (102)
T ss_dssp CCCCHHHHHHHHHHHHTSCSTTEEEEEEEECSSSSEEEEEEEECSCHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEccEecCCCceEEEEEEEECCHHH
Confidence 45677777765543 33 344443333 3445788999999433343
No 243
>3i2z_B RNA chaperone, negative regulator of CSPA transcription; beta barrel, DNA binding protein/transcription, cytoplasm, gene regulation; 1.10A {Salmonella typhimurium} SCOP: b.40.4.5 PDB: 2l15_A 1mjc_A 3mef_A
Probab=44.86 E-value=22 Score=17.73 Aligned_cols=9 Identities=44% Similarity=0.349 Sum_probs=6.8
Q ss_pred cceEEEEEe
Q psy11978 68 SKGKIFEAA 76 (91)
Q Consensus 68 ~~g~afv~~ 76 (91)
.+|||||.-
T Consensus 16 ~kGfGFI~~ 24 (71)
T 3i2z_B 16 SKGFGFITP 24 (71)
T ss_dssp TTTEEEEEE
T ss_pred CCCcEEEec
Confidence 379999963
No 244
>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*
Probab=44.85 E-value=20 Score=22.20 Aligned_cols=30 Identities=13% Similarity=0.062 Sum_probs=22.4
Q ss_pred eEEEcCCCCCCcHHHHHHHhhcCCCeeEEE
Q psy11978 29 KMFVGQIPRSMDEADLTKMFSEYGRVYNIN 58 (91)
Q Consensus 29 ~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~ 58 (91)
.+.|+|+|+.++..-|..++.....+....
T Consensus 97 ~~vv~NlPy~i~~~il~~ll~~~~~~~~~~ 126 (249)
T 3ftd_A 97 LKVVGNLPYNVASLIIENTVYNKDCVPLAV 126 (249)
T ss_dssp EEEEEECCTTTHHHHHHHHHHTGGGCSEEE
T ss_pred cEEEEECchhccHHHHHHHHhcCCCCceEE
Confidence 478899999999998888887543344433
No 245
>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24
Probab=43.02 E-value=14 Score=24.44 Aligned_cols=22 Identities=14% Similarity=0.082 Sum_probs=18.2
Q ss_pred eEEEcCCCCCCcHHHHHHHhhc
Q psy11978 29 KMFVGQIPRSMDEADLTKMFSE 50 (91)
Q Consensus 29 ~l~V~~L~~~~t~~~l~~~f~~ 50 (91)
-..|+|||+.++..-|..++..
T Consensus 144 ~~vvaNLPYnIstpil~~ll~~ 165 (353)
T 1i4w_A 144 FLTVANVTGEGSEGLIMQWLSC 165 (353)
T ss_dssp EEEEEECCSTTHHHHHHHHHHH
T ss_pred eEEEEECCCchHHHHHHHHHHh
Confidence 4789999999999888777763
No 246
>2v94_A RPS24, 30S ribosomal protein S24E; ribonucleoprotein; 1.90A {Pyrococcus abyssi} SCOP: d.12.1.3
Probab=41.57 E-value=43 Score=18.31 Aligned_cols=45 Identities=13% Similarity=-0.044 Sum_probs=25.3
Q ss_pred CCCcHHHHHHHhhc-CC---CeeEEEEeec-CCCCCcceEEEEEeCHHHH
Q psy11978 37 RSMDEADLTKMFSE-YG---RVYNINVLRD-KVTGQSKGKIFEAAFLKIA 81 (91)
Q Consensus 37 ~~~t~~~l~~~f~~-~G---~i~~~~~~~~-~~tg~~~g~afv~~~~~~a 81 (91)
...+..++++-+.. |+ .+..|.=++. -..|++.|||.|.-+.+.|
T Consensus 37 ~tpsk~eirekLA~~~~~~~d~Vvv~~~~T~fG~gkstG~a~IYds~e~a 86 (107)
T 2v94_A 37 PTPSRKDVKGKLVAMLDLNPETTVIQYIRSYFGSYKSKGYAKYYYDKDRM 86 (107)
T ss_dssp CCCCHHHHHHHHHHHHTCCGGGEEEEEEECCTTCSEEEEEEEEESSHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEEECCHHHH
Confidence 35667777765543 43 3334433333 3457889999994343433
No 247
>3aqq_A Calcium-regulated heat stable protein 1; compact beta-barrel, cold shock domain, ssDNA binding, DNA B protein; 2.80A {Homo sapiens}
Probab=41.34 E-value=23 Score=20.58 Aligned_cols=9 Identities=44% Similarity=0.493 Sum_probs=7.1
Q ss_pred cceEEEEEe
Q psy11978 68 SKGKIFEAA 76 (91)
Q Consensus 68 ~~g~afv~~ 76 (91)
.+|||||.-
T Consensus 73 ~KGfGFI~~ 81 (147)
T 3aqq_A 73 SKGHGFITP 81 (147)
T ss_dssp TTTEEEEEE
T ss_pred CCCeEEecc
Confidence 379999964
No 248
>2yty_A Cold shock domain-containing protein E1; cell-free protein synthesis, beta-barrel, translational REGU RNA chaperone, RNA/DNA binding, QB fold; NMR {Homo sapiens}
Probab=36.24 E-value=15 Score=19.28 Aligned_cols=8 Identities=13% Similarity=-0.081 Sum_probs=6.5
Q ss_pred ceEEEEEe
Q psy11978 69 KGKIFEAA 76 (91)
Q Consensus 69 ~g~afv~~ 76 (91)
+|||||.-
T Consensus 28 kGfGFI~~ 35 (88)
T 2yty_A 28 DNFGFIET 35 (88)
T ss_dssp SSEEEEEC
T ss_pred CCccEEec
Confidence 69999963
No 249
>2ytx_A Cold shock domain-containing protein E1; cell-free protein synthesis, beta-barrel, translational REGU RNA chaperone, RNA/DNA binding, QB fold; NMR {Homo sapiens}
Probab=35.59 E-value=15 Score=19.59 Aligned_cols=9 Identities=11% Similarity=-0.082 Sum_probs=7.0
Q ss_pred cceEEEEEe
Q psy11978 68 SKGKIFEAA 76 (91)
Q Consensus 68 ~~g~afv~~ 76 (91)
.+|||||.-
T Consensus 27 ~KGfGFI~~ 35 (97)
T 2ytx_A 27 KEAFGFIER 35 (97)
T ss_dssp CSSEEEEEC
T ss_pred eCCceEEec
Confidence 469999963
No 250
>1eij_A Hypothetical protein MTH1615; beta-helix, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: a.5.6.1
Probab=35.36 E-value=29 Score=18.03 Aligned_cols=19 Identities=11% Similarity=0.454 Sum_probs=16.8
Q ss_pred cCCCCCCcHHHHHHHhhcC
Q psy11978 33 GQIPRSMDEADLTKMFSEY 51 (91)
Q Consensus 33 ~~L~~~~t~~~l~~~f~~~ 51 (91)
|.|+..+|+++|.+++.+.
T Consensus 50 Gqi~~ki~e~~L~~lL~~i 68 (80)
T 1eij_A 50 GRVRSKITDEQLKELLKRV 68 (80)
T ss_dssp CSSCCCCCHHHHHHHHHHH
T ss_pred CCCCCCcCHHHHHHHHHHH
Confidence 7888999999999999874
No 251
>1wfq_A UNR protein; beta-barrel, translational regulation, RNA chaperone, RNA/DN binding, QB fold, greek-KEY topology, structur genomics; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=34.75 E-value=16 Score=19.20 Aligned_cols=8 Identities=13% Similarity=-0.060 Sum_probs=6.7
Q ss_pred ceEEEEEe
Q psy11978 69 KGKIFEAA 76 (91)
Q Consensus 69 ~g~afv~~ 76 (91)
+||+||.-
T Consensus 28 KGfGFI~~ 35 (89)
T 1wfq_A 28 TSYGFIQC 35 (89)
T ss_dssp SSEEEEEE
T ss_pred CCeeEEec
Confidence 79999963
No 252
>2ytv_A Cold shock domain-containing protein E1; cell-free protein synthesis, beta-barrel, translational REGU RNA chaperone, RNA/DNA binding, QB fold; NMR {Homo sapiens}
Probab=33.61 E-value=15 Score=18.82 Aligned_cols=7 Identities=14% Similarity=-0.202 Sum_probs=6.3
Q ss_pred ceEEEEE
Q psy11978 69 KGKIFEA 75 (91)
Q Consensus 69 ~g~afv~ 75 (91)
+||+||.
T Consensus 18 KGfGFI~ 24 (79)
T 2ytv_A 18 DQFGFIN 24 (79)
T ss_dssp SSEEEES
T ss_pred ccceeEe
Confidence 7999995
No 253
>4a8j_B Elongator complex protein 5; transcription; 2.10A {Saccharomyces cerevisiae} PDB: 4ejs_B
Probab=33.37 E-value=96 Score=19.91 Aligned_cols=46 Identities=11% Similarity=0.382 Sum_probs=35.8
Q ss_pred eEEEcCCCC-CCcHHHHHHHhhcC-------CCeeEEEEeecCCCCCcceEEEE
Q psy11978 29 KMFVGQIPR-SMDEADLTKMFSEY-------GRVYNINVLRDKVTGQSKGKIFE 74 (91)
Q Consensus 29 ~l~V~~L~~-~~t~~~l~~~f~~~-------G~i~~~~~~~~~~tg~~~g~afv 74 (91)
-+-|..++. .+++++|...+++| ..+-.+.+...+.+|++--|.|.
T Consensus 168 Il~v~~~~~~~~deE~l~~~l~k~~~P~glN~~~f~l~ltnrRKSGRsl~y~f~ 221 (270)
T 4a8j_B 168 IVDIDVVLTGTLDTEEVSELLNEFRIPRGLNNDIFQLRLVNKRKSGRSLEYDFI 221 (270)
T ss_dssp EEEEEECCCSSCCHHHHHHHHHTTCCCSSCSCSEEEEEEEEECTTSCEEEEEEE
T ss_pred eEEEecCCCCCccHHHHHHHhhheecccccCCCeEEEEEEeccccCcceEEEEE
Confidence 355555655 67899999988876 35667888888889999999997
No 254
>2lss_A Cold shock-like protein; CSD, CSP, oligonucleotide binding F fold, RNA binding protein, DNA binding protein; NMR {Rickettsia rickettsii}
Probab=37.64 E-value=10 Score=18.96 Aligned_cols=8 Identities=25% Similarity=0.069 Sum_probs=6.7
Q ss_pred cceEEEEE
Q psy11978 68 SKGKIFEA 75 (91)
Q Consensus 68 ~~g~afv~ 75 (91)
.+|||||.
T Consensus 15 ~kGfGFI~ 22 (70)
T 2lss_A 15 TKNFGFIE 22 (70)
Confidence 47999996
No 255
>2xzm_P RPS24E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_P
Probab=29.93 E-value=86 Score=18.27 Aligned_cols=44 Identities=9% Similarity=0.052 Sum_probs=25.1
Q ss_pred CCCcHHHHHHHhhc-CC---CeeEEEEeec-CCCCCcceEEEEEeCHHH
Q psy11978 37 RSMDEADLTKMFSE-YG---RVYNINVLRD-KVTGQSKGKIFEAAFLKI 80 (91)
Q Consensus 37 ~~~t~~~l~~~f~~-~G---~i~~~~~~~~-~~tg~~~g~afv~~~~~~ 80 (91)
...+..+|++-+.. |+ .+..|.-+.. -..|.+.|||.|+-+.+.
T Consensus 31 aTpSk~eIrekLAkmy~~~~d~VvV~g~rT~fGggkStGfa~IYDs~e~ 79 (149)
T 2xzm_P 31 PTASKEKIREELAKQLKVDARNVVVYGFSTQYGGGKSTGFALVYDNQQY 79 (149)
T ss_dssp CSCCHHHHHHHHHHHHTCCGGGEEEEEECCCSSSSEEEEEEEEESCHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEEeCCHHH
Confidence 35677787766654 44 3333433333 345788899999434343
No 256
>1x65_A UNR protein; cell-free protein synthesis, beta-barrel, translational REGU RNA chaperone, RNA/DNA binding, QB fold, greek-KEY topology protein; NMR {Homo sapiens}
Probab=29.73 E-value=13 Score=19.61 Aligned_cols=8 Identities=25% Similarity=0.156 Sum_probs=6.7
Q ss_pred ceEEEEEe
Q psy11978 69 KGKIFEAA 76 (91)
Q Consensus 69 ~g~afv~~ 76 (91)
+|||||.-
T Consensus 18 KGfGFI~~ 25 (89)
T 1x65_A 18 DGFGFIKC 25 (89)
T ss_dssp TTBCEEEE
T ss_pred CCcceeec
Confidence 79999963
No 257
>2jsh_A Appetite-regulating hormone, obestatin; micellar solution, DPC, SDS, alternative splicing, amidation, lipoprotein, secreted; NMR {Synthetic} PDB: 2jsj_A
Probab=29.68 E-value=22 Score=14.37 Aligned_cols=22 Identities=14% Similarity=0.169 Sum_probs=12.9
Q ss_pred CCCCCCcHHHHHHHhhcCCCee
Q psy11978 34 QIPRSMDEADLTKMFSEYGRVY 55 (91)
Q Consensus 34 ~L~~~~t~~~l~~~f~~~G~i~ 55 (91)
|-|+++.-..-.+-|.+||.+.
T Consensus 2 naPFeiGi~ls~~~y~~yG~~L 23 (26)
T 2jsh_A 2 NAPFDVGIKLSGAQYQQHGRAL 23 (26)
T ss_dssp CSCSSTTGGGHHHHCSCSSSCC
T ss_pred CCceeEeeEecHHHHHHHhHHh
Confidence 3455554444455677888753
No 258
>2fh0_A Hypothetical 16.0 kDa protein in ABF2-CHL12 intergenic region; ensemble, YMR074CP, unknown function; NMR {Saccharomyces cerevisiae}
Probab=28.89 E-value=36 Score=17.71 Aligned_cols=19 Identities=11% Similarity=0.405 Sum_probs=16.3
Q ss_pred cCCCCCCcHHHHHHHhhcC
Q psy11978 33 GQIPRSMDEADLTKMFSEY 51 (91)
Q Consensus 33 ~~L~~~~t~~~l~~~f~~~ 51 (91)
|.|+..+++++|.+++.+.
T Consensus 48 Gqi~~ki~e~~L~~lL~~i 66 (81)
T 2fh0_A 48 NNVTHKITEAEIVSILNGI 66 (81)
T ss_dssp TCCSCCBCHHHHHHHHHHH
T ss_pred CCCCCCcCHHHHHHHHHHH
Confidence 6788899999999998764
No 259
>2lfv_A Protein DAMX; cell division, peptidoglycan binding domain, murein binding bacterial cell division protein, RNP fold, RNP domain, cell; NMR {Escherichia coli}
Probab=34.10 E-value=12 Score=20.35 Aligned_cols=53 Identities=17% Similarity=0.117 Sum_probs=28.7
Q ss_pred CCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCcceEEEEE--e-CHHHHHHHHhhc
Q psy11978 34 QIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEA--A-FLKIARAAIEPQ 88 (91)
Q Consensus 34 ~L~~~~t~~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~afv~--~-~~~~a~~Ai~~~ 88 (91)
.|--..+++++..+..+.+ +..+.+.+....|+. .|..+. | +.++|.+|++.|
T Consensus 29 QL~a~~~~~~l~~f~~~~~-l~~~~v~~t~rnGk~-WyvVlyG~Y~s~~~A~~A~~~L 84 (106)
T 2lfv_A 29 QLSSSSNYDNLNGWAKKEN-LKNYVVYETTRNGQP-WYVLVSGVYASKEEAKKAVSTL 84 (106)
Confidence 3333445667777776665 334444443323332 343333 5 448888888765
No 260
>1ik9_C DNA ligase IV; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens}
Probab=27.05 E-value=47 Score=14.38 Aligned_cols=16 Identities=25% Similarity=0.227 Sum_probs=12.6
Q ss_pred CCCCcHHHHHHHhhcC
Q psy11978 36 PRSMDEADLTKMFSEY 51 (91)
Q Consensus 36 ~~~~t~~~l~~~f~~~ 51 (91)
...++.++|+.+|...
T Consensus 19 ~rd~t~~eLk~il~~m 34 (37)
T 1ik9_C 19 FIDTDLNQLKEVFSGI 34 (37)
T ss_dssp SSCCCHHHHHHHHHTC
T ss_pred cCcCCHHHHHHHHHHc
Confidence 3567899999999764
No 261
>4aj5_1 SKA3, spindle and kinetochore-associated protein 3; cell cycle, SKA complex, mitosis, cell division, kinetochore microtubule attachment; 3.32A {Homo sapiens}
Probab=25.20 E-value=29 Score=18.87 Aligned_cols=11 Identities=27% Similarity=0.794 Sum_probs=7.8
Q ss_pred HHHHHHhhcCC
Q psy11978 42 ADLTKMFSEYG 52 (91)
Q Consensus 42 ~~l~~~f~~~G 52 (91)
..|+++|++||
T Consensus 91 ~~ire~fqKYG 101 (101)
T 4aj5_1 91 MKIREYFQKYG 101 (101)
T ss_dssp HHHHHHHHHC-
T ss_pred HHHHHHHHHcC
Confidence 45788888887
No 262
>3u5c_Y RP50, 40S ribosomal protein S24-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_U* 3j16_D 3u5g_Y
Probab=24.80 E-value=1e+02 Score=17.57 Aligned_cols=44 Identities=16% Similarity=0.147 Sum_probs=26.6
Q ss_pred CCCcHHHHHHHhhc-CC---CeeEEEEeec-CCCCCcceEEEEEeCHHH
Q psy11978 37 RSMDEADLTKMFSE-YG---RVYNINVLRD-KVTGQSKGKIFEAAFLKI 80 (91)
Q Consensus 37 ~~~t~~~l~~~f~~-~G---~i~~~~~~~~-~~tg~~~g~afv~~~~~~ 80 (91)
...+..+|++-+.. |+ .+..|.-++. -..|++.|||.|+-+.+.
T Consensus 33 aTpsr~eIrekLAk~y~~~~d~VvV~g~rT~fG~gkstGfa~IYds~d~ 81 (135)
T 3u5c_Y 33 ANVSKDELREKLAEVYKAEKDAVSVFGFRTQFGGGKSVGFGLVYNSVAE 81 (135)
T ss_dssp CCCCHHHHHHHHHTTTTSCGGGEEEEEEEECTTSSEEEEEEEEESSHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEeccCCceEEEEEEEeCCHHH
Confidence 35678888887754 55 3334433333 345788999999434343
No 263
>2exu_A Transcription initiation protein SPT4/SPT5; helixs surrounding beta sheet; 2.23A {Saccharomyces cerevisiae}
Probab=24.69 E-value=55 Score=19.96 Aligned_cols=21 Identities=14% Similarity=0.132 Sum_probs=16.7
Q ss_pred cceEEEEEe-CHHHHHHHHhhc
Q psy11978 68 SKGKIFEAA-FLKIARAAIEPQ 88 (91)
Q Consensus 68 ~~g~afv~~-~~~~a~~Ai~~~ 88 (91)
.+||-||+. .......||+.+
T Consensus 148 lkGYIyVEA~~~~~V~~ai~Gi 169 (200)
T 2exu_A 148 YTGRIYIEAPKQSVIEKFCNGV 169 (200)
T ss_dssp STTEEEEECSCHHHHHHHHTTC
T ss_pred CcEEEEEEECCHHHHHHHHhhh
Confidence 689999995 557788888764
No 264
>3pc6_A DNA repair protein XRCC1; BRCT domain, protein:protein interactions, DNA L III-alpha BRCT2 domain, DNA binding protein; HET: DNA; 1.90A {Mus musculus} SCOP: c.15.1.1 PDB: 3pc8_A* 3qvg_B* 1cdz_A
Probab=24.18 E-value=92 Score=16.69 Aligned_cols=28 Identities=7% Similarity=0.014 Sum_probs=21.6
Q ss_pred CceEEEcCCCCCCcHHHHHHHhhcCCCe
Q psy11978 27 FIKMFVGQIPRSMDEADLTKMFSEYGRV 54 (91)
Q Consensus 27 ~~~l~V~~L~~~~t~~~l~~~f~~~G~i 54 (91)
+.++|+.+..+......|+.++-.||..
T Consensus 10 g~~f~l~~~~p~~~r~~l~ryiia~GG~ 37 (104)
T 3pc6_A 10 GKHFFLYGEFPGDERRRLIRYVTAFNGE 37 (104)
T ss_dssp TCEEEEESCCSTTHHHHHHHHHHHTTCE
T ss_pred CeEEEEcCCCcHHHHHHHHHHHHHcCCE
Confidence 5789998776555677889888888764
No 265
>2cru_A Programmed cell death protein 5; three helix bundle, apoptosis, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.6.1 PDB: 2k6b_A
Probab=20.93 E-value=59 Score=18.14 Aligned_cols=20 Identities=20% Similarity=0.473 Sum_probs=17.2
Q ss_pred cCCCCCCcHHHHHHHhhcCC
Q psy11978 33 GQIPRSMDEADLTKMFSEYG 52 (91)
Q Consensus 33 ~~L~~~~t~~~l~~~f~~~G 52 (91)
|.|+..+|+++|.+++....
T Consensus 80 Gqi~~kItee~Lk~lL~~i~ 99 (118)
T 2cru_A 80 GQLSEKVSEQGLIEILKKVS 99 (118)
T ss_dssp TCCCSCBCHHHHHHHHHHHT
T ss_pred CCCCCCcCHHHHHHHHHHHH
Confidence 67888999999999998753
Done!