RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy11978
(91 letters)
>d1cvja1 d.58.7.1 (A:11-90) Poly(A)-binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 80
Score = 44.1 bits (104), Expect = 4e-08
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Query: 29 KMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF-EAAFLKIARAAIE 86
++VG + + EA L + FS G + +I V RD +T +S G + A A++
Sbjct: 2 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 60
>d1uawa_ d.58.7.1 (A:) Musashi-1 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 77
Score = 43.4 bits (102), Expect = 7e-08
Identities = 15/59 (25%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
Query: 29 KMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF-EAAFLKIARAAIE 86
KMF+G + + L + F ++G V V+RD +T +S+G F +
Sbjct: 2 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLA 60
>d1u1qa_ d.58.7.1 (A:) Nuclear ribonucleoprotein A1 (RNP A1, UP1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 183
Score = 43.5 bits (101), Expect = 3e-07
Identities = 13/45 (28%), Positives = 24/45 (53%)
Query: 29 KMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
K+F+G + + L F ++G + + V+RD T +S+G F
Sbjct: 8 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGF 52
>d1x4ga1 d.58.7.1 (A:8-103) Nucleolysin TIAR {Human (Homo sapiens)
[TaxId: 9606]}
Length = 96
Score = 40.0 bits (93), Expect = 2e-06
Identities = 13/66 (19%), Positives = 25/66 (37%), Gaps = 5/66 (7%)
Query: 21 EQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAAFLKI 80
Q P ++ G I + + + + FS +G++ I V +K + +
Sbjct: 12 NQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSF-----VRFSTHES 66
Query: 81 ARAAIE 86
A AI
Sbjct: 67 AAHAIV 72
>d1b7fa1 d.58.7.1 (A:123-204) Sex-lethal protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 82
Score = 39.6 bits (92), Expect = 2e-06
Identities = 13/59 (22%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
Query: 29 KMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSK-GKIFEAAFLKIARAAIE 86
+ V +P+ M + +L +F G + ++RD TG S + ++ AI+
Sbjct: 4 NLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIK 62
>d1no8a_ d.58.7.1 (A:) Nuclear factor Aly {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 78
Score = 38.8 bits (90), Expect = 4e-06
Identities = 11/58 (18%), Positives = 24/58 (41%)
Query: 29 KMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAAFLKIARAAIE 86
K+ V + + +AD+ ++F+E+G + V D+ A A++
Sbjct: 2 KLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMK 59
>d2cpha1 d.58.7.1 (A:454-547) Probable RNA-binding protein 19,
Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 94
Score = 39.1 bits (91), Expect = 5e-06
Identities = 13/60 (21%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Query: 29 KMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRD-KVTGQSKGKIF-EAAFLKIARAAIE 86
K+ V IP ++ ++ ++FS +G + + + + TG +G F + + A+ A
Sbjct: 10 KILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFN 69
>d1b7fa2 d.58.7.1 (A:205-289) Sex-lethal protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 85
Score = 38.0 bits (88), Expect = 1e-05
Identities = 19/59 (32%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 29 KMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF-EAAFLKIARAAIE 86
++V +PR++ + L +F +YG + N+LRDK+TG+ +G F + A+ AI
Sbjct: 8 NLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAIS 66
>d2cq4a1 d.58.7.1 (A:132-232) RNA binding protein 23 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 101
Score = 38.1 bits (88), Expect = 1e-05
Identities = 12/50 (24%), Positives = 24/50 (48%)
Query: 20 PEQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSK 69
+ D +F Q+ + DL FS G+V ++ ++ D+ + +SK
Sbjct: 11 LSPEERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSK 60
>d1x0fa1 d.58.7.1 (A:183-257) Nuclear ribonucleoprotein D0 (AUF1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 75
Score = 37.3 bits (86), Expect = 2e-05
Identities = 14/59 (23%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
Query: 29 KMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF-EAAFLKIARAAIE 86
K+FVG + E + + F +G V +I + D T + +G F + + +E
Sbjct: 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME 59
>d1fxla2 d.58.7.1 (A:119-203) Hu antigen D (Hud) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 85
Score = 37.3 bits (86), Expect = 2e-05
Identities = 20/59 (33%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 29 KMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF-EAAFLKIARAAIE 86
++V +P++M + +L ++FS+YGR+ +L D+VTG S+G F A AI+
Sbjct: 8 NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIK 66
>d1x4ba1 d.58.7.1 (A:8-110) Heterogeneous nuclear
ribonucleoproteins A2/B1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 103
Score = 37.7 bits (87), Expect = 2e-05
Identities = 15/68 (22%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Query: 20 PEQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF-EAAFL 78
++ F K+F+G + E L + ++G++ + V+RD + +S+G F + +
Sbjct: 13 KKREKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSM 72
Query: 79 KIARAAIE 86
AA+
Sbjct: 73 AEVDAAMA 80
>d1hd0a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein d0
{Human (Homo sapiens) [TaxId: 9606]}
Length = 75
Score = 36.9 bits (85), Expect = 3e-05
Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Query: 29 KMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF-EAAFLKIARAAIE 86
KMF+G + + DL FS++G V + + D +TG+S+G F + ++
Sbjct: 1 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMD 59
>d2cq0a1 d.58.7.1 (A:231-320) Eukaryotic translation initiation
factor 3 subunit 4 {Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 36.9 bits (85), Expect = 3e-05
Identities = 19/68 (27%), Positives = 29/68 (42%), Gaps = 1/68 (1%)
Query: 20 PEQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSK-GKIFEAAFL 78
P + D + V + E DL ++F +G + I + +DK TGQSK
Sbjct: 1 PNRRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRR 60
Query: 79 KIARAAIE 86
+ A AI
Sbjct: 61 EDAARAIA 68
>d1l3ka1 d.58.7.1 (A:8-91) Nuclear ribonucleoprotein A1 (RNP A1,
UP1) {Human (Homo sapiens) [TaxId: 9606]}
Length = 84
Score = 36.6 bits (84), Expect = 3e-05
Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 29 KMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF-EAAFLKIARAAIE 86
K+F+G + + L F ++G + + V+RD T +S+G F A ++ AA+
Sbjct: 8 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 66
>d2cqda1 d.58.7.1 (A:1-103) RNA-binding region containing protein
1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 103
Score = 37.0 bits (85), Expect = 3e-05
Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Query: 22 QPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF-EAAFLKI 80
Q D F K+FVG +P +A L K F +G + V+ D+ TG+S+G F A
Sbjct: 5 QKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAA 64
Query: 81 ARAAIE 86
A A +
Sbjct: 65 AERACK 70
>d1x5ta1 d.58.7.1 (A:8-90) Splicing factor 3B subunit 4 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 83
Score = 36.3 bits (83), Expect = 5e-05
Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Query: 31 FVGQIPRSMDEADLTKMFSEYGRVYNINVL-RDKVTGQSKGKIF-EAAFLKIARAAIE 86
F+G + +DE L FS +G + + RD TG SKG F A + AAIE
Sbjct: 2 FIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIE 59
>d1u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human
(Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 36.3 bits (83), Expect = 5e-05
Identities = 12/63 (19%), Positives = 22/63 (34%), Gaps = 6/63 (9%)
Query: 29 KMFVGQIPRSMDEADLTKMFSEYGRVYNINVLR-----DKVTGQSKGKIF-EAAFLKIAR 82
+++VG IP + E + F+ R+ + Q K F E +
Sbjct: 3 RLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETT 62
Query: 83 AAI 85
A+
Sbjct: 63 QAM 65
>d2cqpa1 d.58.7.1 (A:917-1002) RNA-binding protein 12 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 86
Score = 35.4 bits (81), Expect = 1e-04
Identities = 8/50 (16%), Positives = 17/50 (34%)
Query: 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF 73
P + V +P ++ ++ F Y + L+ G G+
Sbjct: 6 KPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAM 55
>d1x5ua1 d.58.7.1 (A:7-99) Splicing factor 3B subunit 4 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 93
Score = 35.0 bits (80), Expect = 1e-04
Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Query: 20 PEQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF-EAAFL 78
P ++VG + + E L ++F + G V N ++ +D+VTGQ +G F E
Sbjct: 2 PISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSE 61
Query: 79 KIARAAIE 86
+ A AI+
Sbjct: 62 EDADYAIK 69
>d2cqca1 d.58.7.1 (A:109-191) Arginine/serine-rich splicing factor
10 {Human (Homo sapiens) [TaxId: 9606]}
Length = 83
Score = 35.1 bits (80), Expect = 2e-04
Identities = 18/67 (26%), Positives = 36/67 (53%), Gaps = 2/67 (2%)
Query: 21 EQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF-EAAFLK 79
PDP+ + V + E DL ++FS+YG + +++++ D+ + +S+G F +
Sbjct: 4 ANPDPNC-CLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVD 62
Query: 80 IARAAIE 86
A+ A E
Sbjct: 63 DAKEAKE 69
>d1cvja2 d.58.7.1 (A:91-179) Poly(A)-binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 89
Score = 34.6 bits (79), Expect = 2e-04
Identities = 13/58 (22%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Query: 29 KMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAAFLKIARAAIE 86
+F+ + +S+D L FS +G + + V+ D+ + + A AIE
Sbjct: 10 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGY-GFVHFETQEAAERAIE 66
>d2cq3a1 d.58.7.1 (A:110-202) RNA-binding protein 9 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 93
Score = 34.7 bits (79), Expect = 3e-04
Identities = 11/58 (18%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Query: 29 KMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAAFLKIARAAIE 86
++ V IP + DL +MF ++G++ ++ ++ ++ + A A E
Sbjct: 13 RLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGF-GFVTFENSADADRARE 69
>d1wf2a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoproteins
C1/C2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 98
Score = 34.1 bits (78), Expect = 4e-04
Identities = 10/41 (24%), Positives = 25/41 (60%), Gaps = 3/41 (7%)
Query: 22 QPDPDFI--KMFVGQI-PRSMDEADLTKMFSEYGRVYNINV 59
+ DP + ++F+G + + ++D+ +FS+YG++ +V
Sbjct: 8 KTDPRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSV 48
>d1h2vz_ d.58.7.1 (Z:) CBP20, 20KDa nuclear cap-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 93
Score = 33.8 bits (77), Expect = 5e-04
Identities = 14/59 (23%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
Query: 29 KMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF-EAAFLKIARAAIE 86
++VG + E + ++FS+ G + I + DK+ + G F E A A+
Sbjct: 9 TLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMR 67
>d2cqha1 d.58.7.1 (A:2-81) IGF-II mRNA-binding protein 2 isoform A
{Human (Homo sapiens) [TaxId: 9606]}
Length = 80
Score = 33.1 bits (75), Expect = 7e-04
Identities = 7/35 (20%), Positives = 16/35 (45%)
Query: 29 KMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDK 63
K+++G + ++ DL ++F + VL
Sbjct: 3 KLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLLKS 37
>d2cpja1 d.58.7.1 (A:65-150) Non-POU domain-containing
octamer-binding protein, NonO {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 86
Score = 33.0 bits (75), Expect = 7e-04
Identities = 13/48 (27%), Positives = 27/48 (56%)
Query: 29 KMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAA 76
++FVG +P + E ++ K+F +YG+ + + +DK G + + A
Sbjct: 10 RLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDKGFGFIRLETRTLA 57
>d2cpfa1 d.58.7.1 (A:362-446) Probable RNA-binding protein 19,
Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 85
Score = 32.7 bits (74), Expect = 0.001
Identities = 8/34 (23%), Positives = 17/34 (50%)
Query: 30 MFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDK 63
+F+ + S E L +FS+ G + + + + K
Sbjct: 1 LFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKK 34
>d2disa1 d.58.7.1 (A:8-103) Hypothetical protein FLJ20273 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 96
Score = 32.7 bits (74), Expect = 0.001
Identities = 9/61 (14%), Positives = 22/61 (36%), Gaps = 3/61 (4%)
Query: 29 KMFVGQIPRSMDEADLTKMFSEYGRVYN--INVLRDKVTGQSKG-KIFEAAFLKIARAAI 85
++F+G IP+ ++ + ++ I +++G E + A A
Sbjct: 3 RLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMAR 62
Query: 86 E 86
Sbjct: 63 R 63
>d2cpea1 d.58.7.1 (A:353-453) RNA-binding protein EWS {Human (Homo
sapiens) [TaxId: 9606]}
Length = 101
Score = 32.4 bits (73), Expect = 0.002
Identities = 10/48 (20%), Positives = 16/48 (33%)
Query: 24 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGK 71
D D ++V + S+ DL F + G V + K
Sbjct: 5 DSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDK 52
>d2ghpa1 d.58.7.1 (A:116-196) U4/U6 snRNA-associated-splicing
factor PRP24 {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 81
Score = 31.7 bits (71), Expect = 0.002
Identities = 3/26 (11%), Positives = 11/26 (42%)
Query: 29 KMFVGQIPRSMDEADLTKMFSEYGRV 54
+++ P S + ++ + + V
Sbjct: 3 TLWMTNFPPSYTQRNIRDLLQDINVV 28
>d2cpya1 d.58.7.1 (A:536-638) RNA-binding protein 12 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 103
Score = 31.7 bits (71), Expect = 0.003
Identities = 10/65 (15%), Positives = 21/65 (32%), Gaps = 1/65 (1%)
Query: 23 PDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKI-FEAAFLKIA 81
+ + + IP S+ + D+ + N + GQ G+ + A
Sbjct: 4 VNSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDA 63
Query: 82 RAAIE 86
R +
Sbjct: 64 RKSER 68
>d2cpia1 d.58.7.1 (A:101-189) E3 ubiquitin protein ligase CNOT4
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 89
Score = 31.7 bits (71), Expect = 0.003
Identities = 7/52 (13%), Positives = 22/52 (42%), Gaps = 3/52 (5%)
Query: 29 KMFVGQIPRSMDEADLTKMF---SEYGRVYNINVLRDKVTGQSKGKIFEAAF 77
+FV + + + + ++ K ++G+++ + + S+G A
Sbjct: 10 LVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYV 61
>d1jmta_ d.58.7.3 (A:) U2AF35
(35 KDa subunit) {Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 31.5 bits (71), Expect = 0.004
Identities = 11/64 (17%), Positives = 22/64 (34%), Gaps = 4/64 (6%)
Query: 13 YVRSMSLPEQPDPDFIKM---FVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSK 69
Y + + D + + + E T+M +YG V +NV +
Sbjct: 10 YRNPQNSSQSADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNL-GDHLV 68
Query: 70 GKIF 73
G ++
Sbjct: 69 GNVY 72
>d2cpda1 d.58.7.1 (A:223-308) APOBEC1 stimulating protein {Human
(Homo sapiens) [TaxId: 9606]}
Length = 86
Score = 30.8 bits (69), Expect = 0.005
Identities = 8/48 (16%), Positives = 15/48 (31%)
Query: 29 KMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAA 76
++V + S E + K F+ V + + E A
Sbjct: 10 ILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKIRDYAFVHFSNREDA 57
>d2cqia1 d.58.7.1 (A:1-90) Nucleolysin TIAR {Human (Homo sapiens)
[TaxId: 9606]}
Length = 90
Score = 30.4 bits (68), Expect = 0.009
Identities = 13/65 (20%), Positives = 28/65 (43%), Gaps = 1/65 (1%)
Query: 22 QPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIFEAAFLKIA 81
+ D ++VG + R + E + ++FS+ G + ++ + T E + A
Sbjct: 3 EDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEH-TSNDPYCFVEFYEHRDA 61
Query: 82 RAAIE 86
AA+
Sbjct: 62 AAALA 66
>d1fjca_ d.58.7.1 (A:) Nucleolin {Golden hamster (Mesocricetus
auratus) [TaxId: 10036]}
Length = 96
Score = 29.6 bits (66), Expect = 0.018
Identities = 10/68 (14%), Positives = 22/68 (32%), Gaps = 6/68 (8%)
Query: 20 PEQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGK-IFEAAFL 78
+ + + ++ E +L ++F + + G+SKG E
Sbjct: 9 TSKKVRAARTLLAKNLSFNITEDELKEVFEDALEIRL-----VSQDGKSKGIAYIEFKSE 63
Query: 79 KIARAAIE 86
A +E
Sbjct: 64 ADAEKNLE 71
>d1wf0a_ d.58.7.1 (A:) TAR DNA-binding protein 43, TDP-43 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 28.8 bits (64), Expect = 0.035
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 29 KMFVGQIPRSMDEADLTKMFSEYGRVYNI 57
+FVG+ M E +L + FS+YG V ++
Sbjct: 7 GVFVGRCTGDMTEDELREFFSQYGDVMDV 35
>d1wg1a_ d.58.7.1 (A:) Probable RNA-binding protein KIAA1579
{Human (Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 26.2 bits (57), Expect = 0.29
Identities = 4/27 (14%), Positives = 12/27 (44%)
Query: 29 KMFVGQIPRSMDEADLTKMFSEYGRVY 55
+ V +P+ + ++ + +Y Y
Sbjct: 7 GILVKNLPQDSNCQEVHDLLKDYDLKY 33
>d2f9da1 d.58.7.1 (A:12-125) Pre-mRNA branch site protein p14
{Human (Homo sapiens) [TaxId: 9606]}
Length = 114
Score = 26.5 bits (58), Expect = 0.31
Identities = 9/59 (15%), Positives = 26/59 (44%), Gaps = 4/59 (6%)
Query: 29 KMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKIF-EAAFLKIARAAIE 86
+++ +P + ++ +F +YG + I T +++G + + A+ A +
Sbjct: 9 ILYIRNLPYKITAEEMYDIFGKYGPIRQIR---VGNTPETRGTAYVVYEDIFDAKNACD 64
>d1vjpa1 c.2.1.3 (A:0-209,A:317-381) Hypothetical protein TM1419
{Thermotoga maritima [TaxId: 2336]}
Length = 275
Score = 24.9 bits (54), Expect = 1.5
Identities = 10/36 (27%), Positives = 17/36 (47%), Gaps = 3/36 (8%)
Query: 39 MDEADLTKMFSE---YGRVYNINVLRDKVTGQSKGK 71
+D L K+ + +G VY +N K G ++ K
Sbjct: 219 VDLVRLGKIALDRKEFGTVYPVNAFYMKNPGPAEEK 254
>d1x4da1 d.58.7.1 (A:8-96) Matrin 3 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 89
Score = 23.5 bits (50), Expect = 2.9
Identities = 5/39 (12%), Positives = 11/39 (28%), Gaps = 1/39 (2%)
Query: 31 FVGQIPRS-MDEADLTKMFSEYGRVYNINVLRDKVTGQS 68
+ R L ++ +G + N +L
Sbjct: 12 HIMDFQRGKNLRYQLLQLVEPFGVISNHLILNKINEAFI 50
>d2db7a1 a.273.1.1 (A:3-57) Hairy/enhancer-of-split related with
YRPW motif protein 1; HESR-1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 55
Score = 22.4 bits (48), Expect = 4.6
Identities = 8/20 (40%), Positives = 10/20 (50%)
Query: 7 RECTYEYVRSMSLPEQPDPD 26
REC E R +S+ E D
Sbjct: 18 RECLAEVARYLSIIEGLDAS 37
>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga
maritima [TaxId: 2336]}
Length = 266
Score = 23.1 bits (49), Expect = 5.8
Identities = 8/41 (19%), Positives = 18/41 (43%)
Query: 32 VGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGKI 72
VG++ ++ D + E + +++ +DK G I
Sbjct: 4 VGKVADTLKPGDRVLLSFEDESEFLVDLEKDKKLHTHLGII 44
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.136 0.388
Gapped
Lambda K H
0.267 0.0494 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 346,619
Number of extensions: 14595
Number of successful extensions: 69
Number of sequences better than 10.0: 1
Number of HSP's gapped: 69
Number of HSP's successfully gapped: 45
Length of query: 91
Length of database: 2,407,596
Length adjustment: 55
Effective length of query: 36
Effective length of database: 1,652,446
Effective search space: 59488056
Effective search space used: 59488056
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.4 bits)