BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1198
(249 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q14669|TRIPC_HUMAN E3 ubiquitin-protein ligase TRIP12 OS=Homo sapiens GN=TRIP12 PE=1
SV=1
Length = 1992
Score = 223 bits (569), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 105/126 (83%), Positives = 117/126 (92%), Gaps = 1/126 (0%)
Query: 123 ATKAQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHN 182
++KAQQLL LQA DE QQLQAV+EMCQ+LVMGNE+TL GFPVK VVPALITLL M+HN
Sbjct: 436 SSKAQQLLQGLQA-SDESQQLQAVIEMCQLLVMGNEETLGGFPVKSVVPALITLLQMEHN 494
Query: 183 FDMMNNACRALTYMMEALPRSSAVVLDAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRHS 242
FD+MN+ACRALTYMMEALPRSSAVV+DA+P FLEKLQVIQC+DVAEQ+LTALEMLSRRHS
Sbjct: 495 FDIMNHACRALTYMMEALPRSSAVVVDAIPVFLEKLQVIQCIDVAEQALTALEMLSRRHS 554
Query: 243 KAILQA 248
KAILQA
Sbjct: 555 KAILQA 560
>sp|E1B7Q7|TRIPC_BOVIN E3 ubiquitin-protein ligase TRIP12 OS=Bos taurus GN=TRIP12 PE=2
SV=2
Length = 1992
Score = 223 bits (569), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 105/126 (83%), Positives = 117/126 (92%), Gaps = 1/126 (0%)
Query: 123 ATKAQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHN 182
++KAQQLL LQA DE QQLQAV+EMCQ+LVMGNE+TL GFPVK VVPALITLL M+HN
Sbjct: 436 SSKAQQLLQGLQA-SDESQQLQAVIEMCQLLVMGNEETLGGFPVKSVVPALITLLQMEHN 494
Query: 183 FDMMNNACRALTYMMEALPRSSAVVLDAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRHS 242
FD+MN+ACRALTYMMEALPRSSAVV+DA+P FLEKLQVIQC+DVAEQ+LTALEMLSRRHS
Sbjct: 495 FDIMNHACRALTYMMEALPRSSAVVVDAIPVFLEKLQVIQCIDVAEQALTALEMLSRRHS 554
Query: 243 KAILQA 248
KAILQA
Sbjct: 555 KAILQA 560
>sp|F1LP64|TRIPC_RAT E3 ubiquitin-protein ligase TRIP12 OS=Rattus norvegicus GN=Trip12
PE=2 SV=1
Length = 2025
Score = 223 bits (568), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 105/126 (83%), Positives = 117/126 (92%), Gaps = 1/126 (0%)
Query: 123 ATKAQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHN 182
++KAQQLL LQA DE QQLQAV+EMCQ+LVMGNE+TL GFPVK VVPALITLL M+HN
Sbjct: 442 SSKAQQLLQGLQA-SDESQQLQAVIEMCQLLVMGNEETLGGFPVKSVVPALITLLQMEHN 500
Query: 183 FDMMNNACRALTYMMEALPRSSAVVLDAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRHS 242
FD+MN+ACRALTYMMEALPRSSAVV+DA+P FLEKLQVIQC+DVAEQ+LTALEMLSRRHS
Sbjct: 501 FDIMNHACRALTYMMEALPRSSAVVVDAIPVFLEKLQVIQCIDVAEQALTALEMLSRRHS 560
Query: 243 KAILQA 248
KAILQA
Sbjct: 561 KAILQA 566
>sp|G5E870|TRIPC_MOUSE E3 ubiquitin-protein ligase TRIP12 OS=Mus musculus GN=Trip12 PE=1
SV=1
Length = 2025
Score = 223 bits (568), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 105/126 (83%), Positives = 117/126 (92%), Gaps = 1/126 (0%)
Query: 123 ATKAQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHN 182
++KAQQLL LQA DE QQLQAV+EMCQ+LVMGNE+TL GFPVK VVPALITLL M+HN
Sbjct: 442 SSKAQQLLQGLQA-SDESQQLQAVIEMCQLLVMGNEETLGGFPVKSVVPALITLLQMEHN 500
Query: 183 FDMMNNACRALTYMMEALPRSSAVVLDAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRHS 242
FD+MN+ACRALTYMMEALPRSSAVV+DA+P FLEKLQVIQC+DVAEQ+LTALEMLSRRHS
Sbjct: 501 FDIMNHACRALTYMMEALPRSSAVVVDAIPVFLEKLQVIQCIDVAEQALTALEMLSRRHS 560
Query: 243 KAILQA 248
KAILQA
Sbjct: 561 KAILQA 566
>sp|B4F6W9|TRIPC_XENTR E3 ubiquitin-protein ligase TRIP12 OS=Xenopus tropicalis GN=trip12
PE=2 SV=1
Length = 2056
Score = 223 bits (567), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 105/126 (83%), Positives = 117/126 (92%), Gaps = 1/126 (0%)
Query: 123 ATKAQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHN 182
++KAQQLL LQA DE QQLQAV+EMCQ+LVMGNE+TL GFPVK VVPALITLL M+HN
Sbjct: 478 SSKAQQLLQGLQAT-DESQQLQAVIEMCQLLVMGNEETLGGFPVKSVVPALITLLQMEHN 536
Query: 183 FDMMNNACRALTYMMEALPRSSAVVLDAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRHS 242
FD+MN+ACRALTYMMEALPRSSAVV+DA+P FLEKLQVIQC+DVAEQ+LTALEMLSRRHS
Sbjct: 537 FDIMNHACRALTYMMEALPRSSAVVVDAIPVFLEKLQVIQCIDVAEQALTALEMLSRRHS 596
Query: 243 KAILQA 248
KAILQA
Sbjct: 597 KAILQA 602
>sp|F1RCR6|TRIPC_DANRE E3 ubiquitin-protein ligase TRIP12 OS=Danio rerio GN=trip12 PE=2
SV=1
Length = 2026
Score = 218 bits (554), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 103/126 (81%), Positives = 115/126 (91%)
Query: 123 ATKAQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHN 182
++KAQQLL LQA GDE QQLQA +EMCQ+LVMGNE+TL GFPVK VVPALITLL M+HN
Sbjct: 475 SSKAQQLLQGLQATGDESQQLQAAIEMCQLLVMGNEETLGGFPVKSVVPALITLLQMEHN 534
Query: 183 FDMMNNACRALTYMMEALPRSSAVVLDAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRHS 242
FD+MN+A RALTYMMEALPRSSAVV+DA+P FLEKLQVIQ +DVAEQ+LTALEMLSRRHS
Sbjct: 535 FDIMNHASRALTYMMEALPRSSAVVVDAIPVFLEKLQVIQFIDVAEQALTALEMLSRRHS 594
Query: 243 KAILQA 248
KAILQA
Sbjct: 595 KAILQA 600
>sp|Q6WWW4|UPL3_ARATH E3 ubiquitin-protein ligase UPL3 OS=Arabidopsis thaliana GN=UPL3
PE=1 SV=1
Length = 1888
Score = 98.2 bits (243), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 52/126 (41%), Positives = 84/126 (66%), Gaps = 2/126 (1%)
Query: 125 KAQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHNFD 184
+ +++L L+A G+E +Q++A+ ++C+ML +G ED+L+ F V VP L+ LL+ + N D
Sbjct: 194 RMKKILSGLRAEGEEGKQVEALTQLCEMLSIGTEDSLSTFSVDSFVPVLVGLLNHESNPD 253
Query: 185 MMNNACRALTYMMEALPRSSAVVLD--AVPTFLEKLQVIQCMDVAEQSLTALEMLSRRHS 242
+M A RALT++ + LP S A V+ AV + +L I+ MD+AEQSL AL+ +S+ H
Sbjct: 254 IMLLAARALTHLCDVLPSSCAAVVHYGAVSCLVARLLTIEYMDLAEQSLQALKKISQEHP 313
Query: 243 KAILQA 248
A L+A
Sbjct: 314 TACLRA 319
>sp|Q9LYZ7|UPL4_ARATH E3 ubiquitin-protein ligase UPL4 OS=Arabidopsis thaliana GN=UPL4
PE=1 SV=1
Length = 1502
Score = 74.7 bits (182), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 43/126 (34%), Positives = 69/126 (54%), Gaps = 2/126 (1%)
Query: 125 KAQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHNFD 184
K + LL++L D QL + E+C++L E++L+ + P L+ L ++N D
Sbjct: 110 KLKSLLLNLTGETDPSGQLSRLTELCEVLSFSTEESLSSVMANMLSPVLVKLAKHENNAD 169
Query: 185 MMNNACRALTYMMEALPRSSAVVL--DAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRHS 242
+M A RA+TY+ + P S ++ D +P ++L I+ +DVAEQ L ALE +SR
Sbjct: 170 IMLLAIRAITYLCDVYPPSVEFLVRHDTIPALCQRLLTIEYLDVAEQCLQALEKISRDEP 229
Query: 243 KAILQA 248
A L A
Sbjct: 230 VACLNA 235
>sp|Q10435|YDE1_SCHPO Probable ubiquitin fusion degradation protein C12B10.01c
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPAC12B10.01c PE=3 SV=2
Length = 1647
Score = 48.5 bits (114), Expect = 4e-05, Method: Composition-based stats.
Identities = 38/130 (29%), Positives = 63/130 (48%), Gaps = 11/130 (8%)
Query: 128 QLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTG-FPVKQVVPALITLLSMDHNFD-- 184
+LL ++ D Q+ ++ E+ + M ED L G F + A +LS N+D
Sbjct: 372 RLLEGIKDFSDPTVQMLSLQELSEAFAMSTEDMLVGLFSTDSYIAAFSEILS-GRNYDFG 430
Query: 185 -----MMNNACRALTYMMEALPRSSAVVLDA--VPTFLEKLQVIQCMDVAEQSLTALEML 237
+M + ++ MMEALP A + + V E++ +Q +D+AEQ+L LE L
Sbjct: 431 EVSIQLMLSCTTCVSNMMEALPLCMAKIAYSPIVRILCERMFDMQYIDIAEQALGVLERL 490
Query: 238 SRRHSKAILQ 247
S+ IL+
Sbjct: 491 SKDFGICILE 500
>sp|P33202|UFD4_YEAST Ubiquitin fusion degradation protein 4 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=UFD4 PE=1 SV=1
Length = 1483
Score = 47.8 bits (112), Expect = 7e-05, Method: Composition-based stats.
Identities = 35/148 (23%), Positives = 72/148 (48%), Gaps = 14/148 (9%)
Query: 105 SGPSHAPGAALDSESEDTATKAQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGF 164
S S A + E+T ++ ++++++ + + ++ M QM+V D +
Sbjct: 162 SAESSARNERISKLIENTGNASEDPYIAMESLKELSEN---ILMMNQMVV----DRI--I 212
Query: 165 PVKQVVPALITLLS---MDHNFDMMNNACRALTYMMEALPRSSAVVLD--AVPTFLEKLQ 219
P++ ++ + +LS + ++ ACR + + E P S ++ +D +P KL
Sbjct: 213 PMETLIGNIAAILSDKILREELELQMQACRCMYNLFEVCPESISIAVDEHVIPILQGKLV 272
Query: 220 VIQCMDVAEQSLTALEMLSRRHSKAILQ 247
I +D+AEQ L +E +SR H + IL+
Sbjct: 273 EISYIDLAEQVLETVEYISRVHGRDILK 300
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.309 0.124 0.336
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 86,249,977
Number of Sequences: 539616
Number of extensions: 3696326
Number of successful extensions: 65131
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 732
Number of HSP's successfully gapped in prelim test: 979
Number of HSP's that attempted gapping in prelim test: 27579
Number of HSP's gapped (non-prelim): 16233
length of query: 249
length of database: 191,569,459
effective HSP length: 115
effective length of query: 134
effective length of database: 129,513,619
effective search space: 17354824946
effective search space used: 17354824946
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 60 (27.7 bits)