Query psy1198
Match_columns 249
No_of_seqs 141 out of 394
Neff 4.1
Searched_HMMs 46136
Date Fri Aug 16 15:32:13 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1198.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1198hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0168|consensus 100.0 4.9E-41 1.1E-45 338.9 13.8 155 94-248 129-293 (1051)
2 COG5064 SRP1 Karyopherin (impo 100.0 2.5E-31 5.4E-36 251.3 7.6 148 94-243 39-190 (526)
3 KOG0166|consensus 100.0 6.4E-31 1.4E-35 256.4 10.1 149 94-244 36-186 (514)
4 PLN03200 cellulose synthase-in 99.3 3.3E-12 7.1E-17 140.7 9.8 116 125-243 190-316 (2102)
5 cd00020 ARM Armadillo/beta-cat 99.2 1.5E-10 3.2E-15 86.9 8.7 109 126-238 9-119 (120)
6 cd00020 ARM Armadillo/beta-cat 99.0 2.8E-09 6E-14 80.0 7.6 79 164-244 3-83 (120)
7 PLN03200 cellulose synthase-in 98.9 3.7E-09 8.1E-14 117.2 8.9 109 129-241 409-519 (2102)
8 KOG0166|consensus 98.7 5.8E-08 1.3E-12 96.2 9.9 116 126-244 239-398 (514)
9 PF00514 Arm: Armadillo/beta-c 98.4 4.6E-07 1E-11 59.8 4.6 39 200-239 1-41 (41)
10 PF13646 HEAT_2: HEAT repeats; 98.3 5.4E-06 1.2E-10 60.5 8.2 88 126-235 1-88 (88)
11 PF13513 HEAT_EZ: HEAT-like re 98.3 1.5E-06 3.4E-11 59.9 4.7 54 183-237 1-55 (55)
12 PF13646 HEAT_2: HEAT repeats; 98.0 8.3E-06 1.8E-10 59.5 4.9 63 170-242 1-63 (88)
13 COG5064 SRP1 Karyopherin (impo 97.9 1.4E-05 3E-10 77.4 5.3 112 126-241 245-358 (526)
14 KOG4224|consensus 97.8 4.7E-05 1E-09 74.3 6.4 117 125-244 209-326 (550)
15 PF00514 Arm: Armadillo/beta-c 97.7 5E-05 1.1E-09 50.0 3.8 34 164-198 8-41 (41)
16 PF04826 Arm_2: Armadillo-like 97.6 0.00035 7.5E-09 63.7 9.5 59 182-242 108-166 (254)
17 smart00185 ARM Armadillo/beta- 97.6 0.00012 2.6E-09 46.6 4.4 37 202-239 3-41 (41)
18 PF04826 Arm_2: Armadillo-like 97.3 0.00078 1.7E-08 61.4 7.5 77 165-244 9-88 (254)
19 KOG1048|consensus 97.3 0.00039 8.5E-09 71.7 6.2 113 125-240 234-350 (717)
20 PF05804 KAP: Kinesin-associat 97.3 0.001 2.2E-08 68.7 8.9 109 126-242 292-402 (708)
21 smart00185 ARM Armadillo/beta- 97.2 0.00032 6.9E-09 44.6 2.5 34 164-198 8-41 (41)
22 PF10508 Proteasom_PSMB: Prote 96.9 0.0068 1.5E-07 59.6 9.8 106 129-241 43-150 (503)
23 KOG4224|consensus 96.8 0.0096 2.1E-07 58.6 10.5 107 126-238 294-404 (550)
24 PF05804 KAP: Kinesin-associat 96.8 0.0021 4.5E-08 66.5 6.2 88 152-242 273-363 (708)
25 KOG2171|consensus 96.6 0.0058 1.3E-07 65.6 8.0 113 131-245 396-510 (1075)
26 PRK09687 putative lyase; Provi 96.3 0.041 8.9E-07 50.5 10.4 103 127-238 57-187 (280)
27 PF12348 CLASP_N: CLASP N term 96.3 0.0065 1.4E-07 52.1 4.9 115 126-242 5-126 (228)
28 KOG2160|consensus 96.3 0.043 9.4E-07 52.7 10.8 113 130-245 87-202 (342)
29 PF01749 IBB: Importin beta bi 96.3 0.0026 5.7E-08 50.1 2.2 54 94-148 37-97 (97)
30 PRK09687 putative lyase; Provi 96.2 0.031 6.7E-07 51.3 9.4 63 167-238 158-220 (280)
31 PF10363 DUF2435: Protein of u 96.2 0.014 3.1E-07 45.8 6.2 82 124-216 3-84 (92)
32 PF10508 Proteasom_PSMB: Prote 96.0 0.063 1.4E-06 52.9 11.0 113 127-244 80-194 (503)
33 PRK13800 putative oxidoreducta 95.9 0.062 1.3E-06 56.4 11.0 98 125-237 622-741 (897)
34 PF06371 Drf_GBD: Diaphanous G 95.7 0.017 3.6E-07 48.0 4.8 108 125-237 67-185 (187)
35 PF08167 RIX1: rRNA processing 95.6 0.043 9.4E-07 46.5 6.8 114 129-244 30-148 (165)
36 PF02985 HEAT: HEAT repeat; I 95.3 0.027 5.9E-07 35.3 3.6 28 211-239 2-29 (31)
37 PF11698 V-ATPase_H_C: V-ATPas 95.0 0.069 1.5E-06 44.3 6.1 71 168-239 43-115 (119)
38 PF02985 HEAT: HEAT repeat; I 95.0 0.039 8.5E-07 34.6 3.6 30 169-199 1-30 (31)
39 PF12755 Vac14_Fab1_bd: Vacuol 94.9 0.13 2.9E-06 40.6 7.2 90 142-239 6-96 (97)
40 PF05536 Neurochondrin: Neuroc 94.8 0.11 2.4E-06 52.2 7.9 75 167-244 97-173 (543)
41 PF01602 Adaptin_N: Adaptin N 94.4 0.033 7.2E-07 52.8 3.2 99 137-246 204-303 (526)
42 PF01602 Adaptin_N: Adaptin N 94.2 0.28 6.1E-06 46.6 9.0 104 131-243 121-225 (526)
43 PF13513 HEAT_EZ: HEAT-like re 93.5 0.061 1.3E-06 36.8 2.4 30 166-196 26-55 (55)
44 PRK13800 putative oxidoreducta 92.9 0.57 1.2E-05 49.4 9.4 59 167-235 837-895 (897)
45 PF05004 IFRD: Interferon-rela 92.8 0.78 1.7E-05 42.9 9.2 118 124-246 43-170 (309)
46 PF03224 V-ATPase_H_N: V-ATPas 92.7 0.29 6.3E-06 44.9 6.2 119 124-246 146-276 (312)
47 KOG1059|consensus 92.7 0.59 1.3E-05 49.3 8.9 116 124-247 181-336 (877)
48 PF12717 Cnd1: non-SMC mitotic 92.7 0.97 2.1E-05 38.3 8.9 99 139-248 2-102 (178)
49 KOG1967|consensus 92.6 0.52 1.1E-05 50.7 8.5 117 126-247 869-990 (1030)
50 KOG1241|consensus 92.2 0.52 1.1E-05 49.8 7.9 109 131-244 371-482 (859)
51 KOG1048|consensus 92.0 0.42 9.1E-06 50.0 6.9 71 168-240 233-305 (717)
52 PF03224 V-ATPase_H_N: V-ATPas 91.8 0.85 1.8E-05 41.8 8.1 110 125-238 106-226 (312)
53 KOG4199|consensus 91.7 1.2 2.7E-05 43.8 9.3 117 126-243 285-407 (461)
54 COG1413 FOG: HEAT repeat [Ener 91.4 1.1 2.5E-05 40.5 8.4 95 124-241 43-137 (335)
55 PF12348 CLASP_N: CLASP N term 91.0 3.9 8.4E-05 35.0 10.9 75 168-243 130-210 (228)
56 KOG1293|consensus 90.9 2.1 4.5E-05 44.6 10.5 113 126-241 421-535 (678)
57 KOG0567|consensus 90.5 0.52 1.1E-05 44.5 5.3 80 170-249 156-259 (289)
58 KOG2171|consensus 90.4 1.3 2.7E-05 48.4 8.8 113 131-247 355-469 (1075)
59 PF12755 Vac14_Fab1_bd: Vacuol 90.4 0.87 1.9E-05 36.0 5.8 60 189-249 6-66 (97)
60 PF11865 DUF3385: Domain of un 88.7 0.78 1.7E-05 39.0 4.7 78 160-238 78-156 (160)
61 KOG0168|consensus 88.6 3.2 7E-05 44.8 10.0 109 126-239 213-364 (1051)
62 PF12031 DUF3518: Domain of un 87.8 3 6.4E-05 39.0 8.2 91 140-236 139-237 (257)
63 PF14668 RICTOR_V: Rapamycin-i 87.5 1.7 3.7E-05 33.1 5.4 60 187-247 5-67 (73)
64 PF12717 Cnd1: non-SMC mitotic 86.9 10 0.00023 32.0 10.5 84 126-220 27-112 (178)
65 KOG1820|consensus 86.8 6.7 0.00014 41.9 11.1 106 132-241 261-367 (815)
66 PF09759 Atx10homo_assoc: Spin 85.9 3.3 7.2E-05 33.5 6.6 57 187-244 4-64 (102)
67 COG5240 SEC21 Vesicle coat com 85.3 7.3 0.00016 41.0 10.1 117 120-245 202-338 (898)
68 cd03569 VHS_Hrs_Vps27p VHS dom 85.1 12 0.00025 31.4 9.8 111 124-241 3-116 (142)
69 PF00790 VHS: VHS domain; Int 85.0 7.6 0.00017 31.9 8.5 110 124-241 4-120 (140)
70 TIGR02270 conserved hypothetic 85.0 8.9 0.00019 37.5 10.3 61 170-241 149-209 (410)
71 KOG2032|consensus 84.7 7.5 0.00016 39.6 9.8 111 124-239 213-329 (533)
72 KOG1293|consensus 84.4 8.2 0.00018 40.4 10.1 110 128-239 13-125 (678)
73 cd00256 VATPase_H VATPase_H, r 84.2 4.3 9.4E-05 40.2 7.8 106 131-239 150-258 (429)
74 TIGR02270 conserved hypothetic 84.0 11 0.00023 37.0 10.4 69 164-244 113-181 (410)
75 PF12719 Cnd3: Nuclear condens 84.0 5.2 0.00011 36.6 7.8 72 124-197 64-142 (298)
76 COG1413 FOG: HEAT repeat [Ener 83.1 9 0.0002 34.7 8.9 77 164-241 101-211 (335)
77 KOG1824|consensus 82.6 4 8.6E-05 44.6 7.2 87 128-219 9-95 (1233)
78 PF05536 Neurochondrin: Neuroc 81.6 12 0.00025 37.9 9.9 114 123-239 4-128 (543)
79 PF05918 API5: Apoptosis inhib 81.1 9.9 0.00022 39.0 9.2 109 124-247 23-133 (556)
80 PF10274 ParcG: Parkin co-regu 80.8 8.4 0.00018 34.2 7.6 118 126-247 40-175 (183)
81 cd00256 VATPase_H VATPase_H, r 80.2 4 8.8E-05 40.4 6.0 70 168-238 353-424 (429)
82 PTZ00429 beta-adaptin; Provisi 80.2 20 0.00044 37.9 11.4 82 131-218 147-228 (746)
83 KOG1061|consensus 79.5 9.4 0.0002 40.4 8.6 109 127-244 124-233 (734)
84 KOG2320|consensus 78.3 7.2 0.00016 40.5 7.2 78 120-201 400-479 (651)
85 PF13251 DUF4042: Domain of un 78.3 7.6 0.00016 34.2 6.5 113 128-241 43-176 (182)
86 smart00288 VHS Domain present 77.8 22 0.00048 29.1 8.8 107 127-241 2-113 (133)
87 PF10165 Ric8: Guanine nucleot 75.6 7.8 0.00017 38.0 6.5 70 151-221 6-86 (446)
88 KOG0567|consensus 75.5 21 0.00045 34.0 8.9 99 123-244 186-285 (289)
89 PF12719 Cnd3: Nuclear condens 75.4 18 0.00038 33.1 8.4 105 124-237 26-141 (298)
90 PF11701 UNC45-central: Myosin 75.1 4.9 0.00011 33.8 4.4 110 123-236 41-156 (157)
91 PF12460 MMS19_C: RNAPII trans 74.6 20 0.00043 34.4 8.8 98 141-247 249-360 (415)
92 PF14664 RICTOR_N: Rapamycin-i 74.5 31 0.00068 33.3 10.1 93 138-238 81-175 (371)
93 PTZ00429 beta-adaptin; Provisi 74.1 52 0.0011 34.9 12.4 70 95-179 10-79 (746)
94 COG5231 VMA13 Vacuolar H+-ATPa 73.9 6.4 0.00014 38.7 5.3 79 160-239 346-428 (432)
95 cd03561 VHS VHS domain family; 73.7 38 0.00082 27.6 9.1 93 143-243 18-116 (133)
96 cd03568 VHS_STAM VHS domain fa 73.5 31 0.00066 29.1 8.7 108 127-242 2-113 (144)
97 PF01347 Vitellogenin_N: Lipop 73.0 9.2 0.0002 37.9 6.3 75 163-247 481-561 (618)
98 PF12783 Sec7_N: Guanine nucle 72.9 14 0.00031 30.7 6.6 80 164-245 69-151 (168)
99 PF10835 DUF2573: Protein of u 72.4 10 0.00022 29.9 5.2 61 167-238 9-70 (82)
100 KOG2023|consensus 71.9 19 0.0004 38.5 8.3 114 124-246 128-251 (885)
101 PF05642 Sporozoite_P67: Sporo 71.7 13 0.00027 38.9 7.0 8 194-201 424-431 (727)
102 PF12460 MMS19_C: RNAPII trans 71.4 20 0.00043 34.4 8.0 75 168-246 323-401 (415)
103 cd03567 VHS_GGA VHS domain fam 71.4 46 0.001 27.9 9.3 109 126-242 2-119 (139)
104 KOG2122|consensus 70.5 7.3 0.00016 44.6 5.3 129 94-239 452-601 (2195)
105 PF08064 UME: UME (NUC010) dom 70.2 22 0.00049 28.2 6.8 87 124-216 14-103 (107)
106 COG5369 Uncharacterized conser 70.2 7.4 0.00016 40.5 5.0 113 126-242 432-548 (743)
107 PF14500 MMS19_N: Dos2-interac 69.3 81 0.0017 29.0 11.2 105 128-244 127-242 (262)
108 PF10274 ParcG: Parkin co-regu 68.9 32 0.0007 30.6 8.2 75 161-237 31-107 (183)
109 KOG4500|consensus 68.7 8.3 0.00018 39.3 4.9 59 183-243 56-120 (604)
110 KOG0301|consensus 68.1 18 0.00039 38.2 7.3 30 168-199 589-618 (745)
111 PF09431 DUF2013: Protein of u 66.6 31 0.00067 29.3 7.3 71 167-239 45-123 (140)
112 COG5215 KAP95 Karyopherin (imp 66.5 18 0.0004 38.1 6.9 109 131-245 373-485 (858)
113 KOG3678|consensus 65.6 27 0.00059 36.2 7.9 114 126-245 182-299 (832)
114 PF12397 U3snoRNP10: U3 small 65.5 30 0.00065 27.3 6.7 70 168-241 6-76 (121)
115 KOG2759|consensus 65.2 15 0.00033 36.8 5.9 70 168-238 366-437 (442)
116 PF10165 Ric8: Guanine nucleot 64.8 19 0.00042 35.3 6.6 106 137-244 44-173 (446)
117 PRK07003 DNA polymerase III su 64.8 5.8 0.00013 42.5 3.1 55 152-207 166-220 (830)
118 PF08423 Rad51: Rad51; InterP 64.7 32 0.00068 31.2 7.5 142 19-198 22-175 (256)
119 KOG2160|consensus 64.4 44 0.00095 32.5 8.7 111 127-240 169-283 (342)
120 PF10350 DUF2428: Putative dea 63.8 34 0.00075 30.9 7.6 54 126-180 101-154 (255)
121 KOG1078|consensus 63.7 12 0.00026 40.1 5.1 73 168-245 245-317 (865)
122 KOG2973|consensus 63.1 14 0.00031 35.9 5.1 65 170-241 5-73 (353)
123 cd08789 CARD_IPS-1_RIG-I Caspa 63.1 4.5 9.8E-05 31.3 1.5 58 164-229 18-83 (84)
124 PF08167 RIX1: rRNA processing 62.9 43 0.00094 28.3 7.6 87 126-216 69-161 (165)
125 KOG1824|consensus 62.3 34 0.00073 37.9 8.1 106 131-247 181-294 (1233)
126 PF05918 API5: Apoptosis inhib 62.3 42 0.00092 34.6 8.6 73 124-204 59-131 (556)
127 KOG4500|consensus 61.8 23 0.00049 36.3 6.5 87 125-215 316-408 (604)
128 KOG2025|consensus 61.8 67 0.0014 34.7 10.0 62 126-194 128-189 (892)
129 KOG1059|consensus 61.7 60 0.0013 35.0 9.7 105 138-247 103-218 (877)
130 cd08050 TAF6 TATA Binding Prot 61.6 67 0.0014 30.6 9.4 111 122-244 176-302 (343)
131 KOG4199|consensus 61.5 40 0.00086 33.6 7.9 107 126-234 330-442 (461)
132 cd03569 VHS_Hrs_Vps27p VHS dom 61.0 13 0.00028 31.1 4.0 81 121-202 38-118 (142)
133 smart00802 UME Domain in UVSB 59.8 35 0.00075 27.6 6.2 87 124-216 14-103 (107)
134 KOG0213|consensus 59.2 27 0.00058 38.0 6.7 98 143-247 862-963 (1172)
135 KOG1242|consensus 59.1 74 0.0016 33.1 9.7 50 189-239 274-324 (569)
136 KOG1241|consensus 58.7 22 0.00048 38.2 6.0 80 166-247 447-538 (859)
137 PF09324 DUF1981: Domain of un 58.5 42 0.00091 25.7 6.2 69 166-237 15-86 (86)
138 PF11698 V-ATPase_H_C: V-ATPas 58.2 10 0.00022 31.5 2.9 72 124-198 43-115 (119)
139 PF05004 IFRD: Interferon-rela 58.2 11 0.00025 35.2 3.5 62 139-202 200-261 (309)
140 PF12054 DUF3535: Domain of un 57.9 8.7 0.00019 37.8 2.9 50 167-216 311-361 (441)
141 cd03568 VHS_STAM VHS domain fa 57.7 17 0.00038 30.5 4.3 97 120-219 33-129 (144)
142 PF09759 Atx10homo_assoc: Spin 56.2 21 0.00047 28.8 4.4 39 170-208 30-69 (102)
143 KOG4413|consensus 56.2 50 0.0011 33.0 7.6 100 137-240 269-378 (524)
144 KOG1240|consensus 56.0 27 0.0006 39.3 6.4 87 142-236 443-545 (1431)
145 PF04499 SAPS: SIT4 phosphatas 53.9 1.3E+02 0.0029 30.1 10.4 36 166-201 60-95 (475)
146 KOG0946|consensus 53.9 1.2E+02 0.0027 33.1 10.5 116 126-243 63-199 (970)
147 cd08812 CARD_RIG-I_like Caspas 52.5 10 0.00022 29.5 1.9 59 164-229 19-87 (88)
148 PF12830 Nipped-B_C: Sister ch 52.2 41 0.00089 29.0 5.8 70 168-245 8-80 (187)
149 smart00638 LPD_N Lipoprotein N 51.6 67 0.0014 31.8 7.9 23 224-246 494-516 (574)
150 COG5215 KAP95 Karyopherin (imp 51.2 77 0.0017 33.7 8.4 35 209-244 408-442 (858)
151 PTZ00035 Rad51 protein; Provis 50.5 1.5E+02 0.0033 28.1 9.7 149 16-198 99-255 (337)
152 KOG1789|consensus 50.2 86 0.0019 35.8 8.8 109 125-238 1772-1882(2235)
153 PF14663 RasGEF_N_2: Rapamycin 49.4 22 0.00047 28.7 3.4 31 210-241 9-39 (115)
154 PF04388 Hamartin: Hamartin pr 48.8 62 0.0013 33.8 7.4 79 139-219 82-161 (668)
155 PF12530 DUF3730: Protein of u 48.3 2E+02 0.0043 25.6 10.0 103 126-238 39-150 (234)
156 smart00288 VHS Domain present 48.3 35 0.00075 28.0 4.5 79 121-200 34-113 (133)
157 KOG0212|consensus 47.4 83 0.0018 33.1 7.9 111 129-243 255-410 (675)
158 KOG2274|consensus 47.1 83 0.0018 34.6 8.1 94 126-221 615-719 (1005)
159 PF00004 AAA: ATPase family as 47.0 9.7 0.00021 28.8 1.0 15 39-53 2-16 (132)
160 KOG2973|consensus 46.0 2E+02 0.0043 28.3 9.7 107 125-242 4-114 (353)
161 COG5098 Chromosome condensatio 45.5 43 0.00093 36.3 5.6 58 121-184 888-949 (1128)
162 cd03561 VHS VHS domain family; 45.2 56 0.0012 26.6 5.3 81 121-202 34-116 (133)
163 COG5096 Vesicle coat complex, 45.2 1.1E+02 0.0024 32.9 8.6 115 121-240 66-196 (757)
164 KOG1932|consensus 44.5 46 0.00099 37.1 5.8 63 130-204 648-711 (1180)
165 PF12830 Nipped-B_C: Sister ch 44.3 1.1E+02 0.0025 26.2 7.3 71 126-204 10-80 (187)
166 PF07814 WAPL: Wings apart-lik 44.2 59 0.0013 31.0 6.0 93 124-220 21-116 (361)
167 KOG3665|consensus 43.2 68 0.0015 33.8 6.7 70 168-237 624-695 (699)
168 PF10521 DUF2454: Protein of u 43.1 85 0.0018 28.7 6.7 81 155-238 107-202 (282)
169 KOG2956|consensus 42.9 1.3E+02 0.0029 30.9 8.4 103 124-230 286-394 (516)
170 smart00802 UME Domain in UVSB 42.0 99 0.0021 25.0 6.2 68 168-238 11-82 (107)
171 cd03565 VHS_Tom1 VHS domain fa 41.6 2.1E+02 0.0045 23.9 9.4 108 127-241 3-117 (141)
172 KOG3723|consensus 41.6 2.3E+02 0.0049 30.3 10.0 85 149-240 182-267 (851)
173 smart00382 AAA ATPases associa 41.0 17 0.00036 26.4 1.5 22 36-57 3-24 (148)
174 KOG2549|consensus 40.3 96 0.0021 32.3 7.1 47 121-179 204-250 (576)
175 KOG1062|consensus 40.2 93 0.002 33.8 7.2 98 132-239 115-233 (866)
176 cd00197 VHS_ENTH_ANTH VHS, ENT 40.2 1.8E+02 0.0038 22.7 8.0 104 127-238 2-114 (115)
177 KOG2611|consensus 40.2 46 0.001 34.6 4.8 62 156-217 91-160 (698)
178 KOG2274|consensus 40.1 1.9E+02 0.0042 32.0 9.5 98 134-234 582-687 (1005)
179 PF08064 UME: UME (NUC010) dom 39.7 1.4E+02 0.003 23.6 6.6 70 168-240 11-84 (107)
180 KOG2023|consensus 39.6 87 0.0019 33.7 6.7 108 125-237 175-283 (885)
181 smart00567 EZ_HEAT E-Z type HE 39.5 27 0.00058 21.1 2.0 22 226-247 3-24 (30)
182 KOG1242|consensus 39.5 2.1E+02 0.0046 29.8 9.4 111 125-242 296-447 (569)
183 PF08389 Xpo1: Exportin 1-like 39.4 39 0.00084 26.3 3.4 49 139-193 100-148 (148)
184 PF08216 CTNNBL: Catenin-beta- 39.3 38 0.00083 27.9 3.4 41 188-230 65-107 (108)
185 KOG4413|consensus 39.2 68 0.0015 32.1 5.6 75 158-237 245-331 (524)
186 PF13764 E3_UbLigase_R4: E3 ub 39.0 2.1E+02 0.0046 30.9 9.6 52 191-242 143-203 (802)
187 COG5181 HSH155 U2 snRNP splice 38.1 97 0.0021 33.3 6.8 102 144-248 665-769 (975)
188 KOG4524|consensus 37.9 64 0.0014 35.5 5.6 74 168-243 803-880 (1014)
189 PF01347 Vitellogenin_N: Lipop 37.8 1.7E+02 0.0036 29.1 8.3 82 135-233 500-583 (618)
190 KOG0212|consensus 37.3 74 0.0016 33.5 5.8 99 125-226 23-141 (675)
191 PF09384 UTP15_C: UTP15 C term 37.3 2.5E+02 0.0054 23.5 8.7 95 137-237 46-145 (148)
192 PF11701 UNC45-central: Myosin 36.8 56 0.0012 27.5 4.1 93 139-240 19-115 (157)
193 COG5656 SXM1 Importin, protein 36.4 70 0.0015 34.8 5.5 52 168-222 499-551 (970)
194 KOG1967|consensus 36.0 91 0.002 34.4 6.4 104 127-234 912-1019(1030)
195 KOG0414|consensus 35.3 61 0.0013 36.4 5.1 98 139-243 894-994 (1251)
196 cd08326 CARD_CASP9 Caspase act 35.0 7.2 0.00016 30.2 -1.4 21 209-229 62-82 (84)
197 COG5240 SEC21 Vesicle coat com 34.3 2.4E+02 0.0053 30.2 8.9 87 138-238 444-554 (898)
198 KOG0743|consensus 33.1 21 0.00045 36.0 1.1 19 39-57 239-257 (457)
199 cd00009 AAA The AAA+ (ATPases 32.6 31 0.00067 25.5 1.8 21 34-54 18-38 (151)
200 cd03567 VHS_GGA VHS domain fam 32.5 88 0.0019 26.3 4.6 80 121-201 35-119 (139)
201 PF13401 AAA_22: AAA domain; P 32.3 21 0.00046 27.2 0.9 20 33-52 2-21 (131)
202 PF09324 DUF1981: Domain of un 32.2 83 0.0018 24.1 4.1 34 212-245 20-53 (86)
203 KOG1465|consensus 31.7 3E+02 0.0064 27.1 8.5 89 139-235 49-161 (353)
204 PF10193 Telomere_reg-2: Telom 31.6 1E+02 0.0022 24.9 4.8 90 126-223 5-98 (114)
205 KOG1222|consensus 31.6 1.9E+02 0.004 30.5 7.5 76 164-242 300-377 (791)
206 PLN03025 replication factor C 30.8 25 0.00054 32.3 1.2 19 37-55 36-54 (319)
207 KOG4653|consensus 30.8 1.5E+02 0.0032 32.7 6.9 78 122-203 725-802 (982)
208 cd08785 CARD_CARD9-like Caspas 30.7 59 0.0013 25.4 3.1 72 144-229 3-84 (86)
209 KOG4535|consensus 30.7 1.5E+02 0.0032 31.1 6.6 69 169-241 107-181 (728)
210 PF07923 N1221: N1221-like pro 30.6 1E+02 0.0022 28.5 5.1 55 164-219 56-126 (293)
211 PF08389 Xpo1: Exportin 1-like 30.6 91 0.002 24.2 4.2 62 168-234 82-148 (148)
212 PF03130 HEAT_PBS: PBS lyase H 30.4 38 0.00083 20.5 1.6 21 226-246 1-21 (27)
213 PF04733 Coatomer_E: Coatomer 29.9 51 0.0011 30.5 3.0 105 127-242 52-165 (290)
214 PF14500 MMS19_N: Dos2-interac 29.7 1.4E+02 0.0031 27.4 5.9 106 131-244 6-116 (262)
215 PF12726 SEN1_N: SEN1 N termin 29.5 5.7E+02 0.012 26.6 10.8 111 125-242 442-556 (727)
216 PF03542 Tuberin: Tuberin; In 28.8 3.8E+02 0.0083 26.1 8.9 12 184-195 234-245 (356)
217 KOG1222|consensus 28.0 2.7E+02 0.0058 29.4 7.9 102 130-240 310-414 (791)
218 PF00910 RNA_helicase: RNA hel 27.7 27 0.00058 27.0 0.7 12 39-50 2-13 (107)
219 COG1222 RPT1 ATP-dependent 26S 27.6 28 0.00061 34.6 1.0 20 34-55 184-203 (406)
220 KOG1789|consensus 27.3 3.7E+02 0.008 31.2 9.2 93 141-238 1741-1840(2235)
221 cd08323 CARD_APAF1 Caspase act 27.1 67 0.0014 25.1 2.8 22 209-230 60-81 (86)
222 PF08045 CDC14: Cell division 27.1 4.4E+02 0.0095 24.7 8.6 88 145-234 111-202 (257)
223 KOG2153|consensus 27.0 3.3E+02 0.0073 29.1 8.5 111 125-240 193-354 (704)
224 KOG1062|consensus 26.8 1.1E+02 0.0023 33.4 5.0 74 168-244 103-176 (866)
225 KOG2956|consensus 26.7 5.6E+02 0.012 26.5 9.8 56 185-241 422-479 (516)
226 KOG4535|consensus 26.6 49 0.0011 34.5 2.5 95 142-237 504-601 (728)
227 PF05327 RRN3: RNA polymerase 26.6 5E+02 0.011 26.4 9.6 113 122-244 27-159 (563)
228 PLN03076 ARF guanine nucleotid 26.2 1.6E+02 0.0035 34.6 6.6 102 138-243 1150-1257(1780)
229 PF08713 DNA_alkylation: DNA a 26.2 2E+02 0.0044 24.1 5.9 71 128-208 124-194 (213)
230 PF08324 PUL: PUL domain; Int 26.0 1.1E+02 0.0025 27.0 4.5 103 137-241 122-233 (268)
231 cd08050 TAF6 TATA Binding Prot 26.0 2.5E+02 0.0054 26.7 7.0 77 142-220 233-320 (343)
232 KOG1248|consensus 25.6 5.8E+02 0.013 29.1 10.3 106 126-236 655-767 (1176)
233 PF03810 IBN_N: Importin-beta 25.5 2.2E+02 0.0047 20.0 5.1 33 168-200 14-47 (77)
234 PF06012 DUF908: Domain of Unk 25.4 1.7E+02 0.0037 27.4 5.8 51 169-219 266-326 (329)
235 COG1474 CDC6 Cdc6-related prot 25.0 36 0.00078 32.8 1.2 15 38-52 45-59 (366)
236 PF14222 MOR2-PAG1_N: Cell mor 25.0 61 0.0013 33.1 2.8 57 191-248 450-511 (552)
237 PF08324 PUL: PUL domain; Int 24.9 1.9E+02 0.0042 25.5 5.7 21 180-200 121-141 (268)
238 KOG2259|consensus 24.8 66 0.0014 34.4 3.1 72 164-240 369-440 (823)
239 KOG4646|consensus 24.7 2.2E+02 0.0048 25.2 5.8 106 126-238 18-127 (173)
240 TIGR02928 orc1/cdc6 family rep 24.4 47 0.001 30.4 1.8 19 35-53 40-58 (365)
241 KOG0989|consensus 24.3 38 0.00082 33.1 1.2 22 34-55 56-77 (346)
242 PF11640 TAN: Telomere-length 24.2 4.2E+02 0.0091 22.0 7.6 55 125-180 5-60 (155)
243 PF13086 AAA_11: AAA domain; P 23.3 41 0.0009 27.6 1.1 17 37-53 19-35 (236)
244 PF02084 Bindin: Bindin; Inte 23.0 61 0.0013 30.2 2.2 20 217-236 143-162 (238)
245 TIGR02881 spore_V_K stage V sp 22.6 43 0.00093 29.8 1.1 15 38-52 45-59 (261)
246 KOG1991|consensus 22.5 2E+02 0.0042 32.0 6.1 74 168-245 502-579 (1010)
247 PF05729 NACHT: NACHT domain 22.4 47 0.001 25.9 1.2 16 39-54 4-19 (166)
248 PF13925 Katanin_con80: con80 22.1 4.8E+02 0.01 22.1 7.4 36 210-246 70-105 (164)
249 PRK06620 hypothetical protein; 21.9 46 0.001 29.2 1.2 19 37-55 46-64 (214)
250 KOG1820|consensus 21.8 7.7E+02 0.017 26.9 10.2 98 141-247 351-451 (815)
251 PF00784 MyTH4: MyTH4 domain; 21.5 2.5E+02 0.0054 22.1 5.2 68 124-198 22-94 (114)
252 PF13245 AAA_19: Part of AAA d 21.4 56 0.0012 24.3 1.4 17 36-52 11-27 (76)
253 PF08045 CDC14: Cell division 21.4 6.8E+02 0.015 23.4 9.8 58 187-245 109-169 (257)
254 TIGR01242 26Sp45 26S proteasom 20.4 68 0.0015 30.0 2.0 25 31-55 152-176 (364)
255 TIGR02237 recomb_radB DNA repa 20.4 60 0.0013 27.4 1.5 23 29-51 6-28 (209)
256 PF07728 AAA_5: AAA domain (dy 20.3 50 0.0011 25.9 1.0 16 39-54 3-18 (139)
257 PF12054 DUF3535: Domain of un 20.3 1.7E+02 0.0037 29.0 4.8 59 120-180 308-366 (441)
No 1
>KOG0168|consensus
Probab=100.00 E-value=4.9e-41 Score=338.87 Aligned_cols=155 Identities=54% Similarity=0.810 Sum_probs=148.4
Q ss_pred cchhHHHHhhCCCCCCCCCCcc--------CccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCC
Q psy1198 94 TSLLSGVASSSSGPSHAPGAAL--------DSESEDTATKAQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFP 165 (249)
Q Consensus 94 ~~r~q~Llkrr~l~~~~~gs~~--------~~~~s~~~~rl~~Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp 165 (249)
.+|+|++++.|++++|+||.+. +.+.++.++|+++||++|++..||+.||++|.||||+|+|.||+.++.||
T Consensus 129 ~grl~~~~e~~~l~qhl~g~lgprv~~ll~rt~~~sasSk~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fp 208 (1051)
T KOG0168|consen 129 AGRLQALLEARGLPQHLFGRLGPRVLQLLHRTIGSSASSKAKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFP 208 (1051)
T ss_pred hhhhhhhhhccccCcccccccchhHHHHhhhcccccchHHHHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhcccc
Confidence 3999999999999999999863 56667777899999999998669999999999999999999999999999
Q ss_pred ccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchhHHHHh--ccHHHHHHHhhcCCChhHHHHHHHHHHHhhhhchh
Q psy1198 166 VKQVVPALITLLSMDHNFDMMNNACRALTYMMEALPRSSAVVL--DAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRHSK 243 (249)
Q Consensus 166 ~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~qT~~VV--GAVPiL~~kLLsi~yiDVAEQALwALenISgD~p~ 243 (249)
++.|||.||.+|++|+|+|||+.||||||||||+.|++..+|| +|||+||+||+.|+|||||||+|+|||+||++||+
T Consensus 209 v~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~~ 288 (1051)
T KOG0168|consen 209 VKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHPK 288 (1051)
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhccH
Confidence 9999999999999999999999999999999999999999999 89999999999999999999999999999999999
Q ss_pred HHhhc
Q psy1198 244 AILQA 248 (249)
Q Consensus 244 aIL~a 248 (249)
+||+|
T Consensus 289 AiL~A 293 (1051)
T KOG0168|consen 289 AILQA 293 (1051)
T ss_pred HHHhc
Confidence 99996
No 2
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=99.97 E-value=2.5e-31 Score=251.32 Aligned_cols=148 Identities=21% Similarity=0.185 Sum_probs=125.4
Q ss_pred cchhHHHHhhCCC-CCCCC-CCccCccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHH
Q psy1198 94 TSLLSGVASSSSG-PSHAP-GAALDSESEDTATKAQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVP 171 (249)
Q Consensus 94 ~~r~q~Llkrr~l-~~~~~-gs~~~~~~s~~~~rl~~Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP 171 (249)
+||++.|-||||+ +-... -+.+-.+--..-..+++|.+.|.| +|-..|++++.++|++||+++.|||+.++..|+||
T Consensus 39 qKreE~LnKrRNl~dv~e~a~ss~i~meqq~~~elp~lt~~l~S-dDie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVp 117 (526)
T COG5064 39 QKREELLNKRRNLADVSEEAESSFIPMEQQFYSELPQLTQQLFS-DDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVP 117 (526)
T ss_pred HHHHHHHHhhcccccccchhhhccCchhHHhhhhhHHHHHHHhh-hHHHHHHHHHHHHHHHhccccCCCchhHHhccccH
Confidence 5999999999998 21111 011111111222367999999999 59999999999999999999999999999999999
Q ss_pred HHHHhcCCCCCccHHHHHHHHHHHHHhcCchhHHHHh--ccHHHHHHHhhcCCChhHHHHHHHHHHHhhhhchh
Q psy1198 172 ALITLLSMDHNFDMMNNACRALTYMMEALPRSSAVVL--DAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRHSK 243 (249)
Q Consensus 172 ~LV~iLs~e~n~dLQ~eAArALTNIasgtp~qT~~VV--GAVPiL~~kLLsi~yiDVAEQALwALenISgD~p~ 243 (249)
+||+||...++.-+||||||+||||++|++.||++|| ||||.|++ ||.++..||.||++||||||++|++.
T Consensus 118 Rfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvVvd~~AVPlfiq-lL~s~~~~V~eQavWALGNiAGDS~~ 190 (526)
T COG5064 118 RFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQ-LLSSTEDDVREQAVWALGNIAGDSEG 190 (526)
T ss_pred HHHHHHHhcchhHHHHHHHHHHhhhccCcccceEEEEeCCchHHHHH-HHcCchHHHHHHHHHHhccccCCchh
Confidence 9999997666667899999999999999999999999 99999998 77778999999999999999999875
No 3
>KOG0166|consensus
Probab=99.97 E-value=6.4e-31 Score=256.40 Aligned_cols=149 Identities=25% Similarity=0.287 Sum_probs=128.2
Q ss_pred cchhHHHHhhCCCCCCCCCCccCccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHH
Q psy1198 94 TSLLSGVASSSSGPSHAPGAALDSESEDTATKAQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPAL 173 (249)
Q Consensus 94 ~~r~q~Llkrr~l~~~~~gs~~~~~~s~~~~rl~~Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~L 173 (249)
.||++.|+|||+......-......+.......+.+++.++| +|+..|+.+++.+|++||.+++|||+.++..|+||+|
T Consensus 36 ~kree~l~k~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S-~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~l 114 (514)
T KOG0166|consen 36 NKREESLLKRRNDEEELMLDELLSDSQSQASNLELMLAALYS-DDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRL 114 (514)
T ss_pred HHHHHHHHHHhhhhhhcccccccchhHHHhhhhHHHHHHHhC-CCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHH
Confidence 499999999999222111111111223333447888999999 5999999999999999999999999998889999999
Q ss_pred HHhcCCCCCccHHHHHHHHHHHHHhcCchhHHHHh--ccHHHHHHHhhcCCChhHHHHHHHHHHHhhhhchhH
Q psy1198 174 ITLLSMDHNFDMMNNACRALTYMMEALPRSSAVVL--DAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRHSKA 244 (249)
Q Consensus 174 V~iLs~e~n~dLQ~eAArALTNIasgtp~qT~~VV--GAVPiL~~kLLsi~yiDVAEQALwALenISgD~p~a 244 (249)
|+||.++++|.+|||||||||||+++++++|++|| ||||+|++ |+.++++||+|||+|||+||++|+|.-
T Consensus 115 V~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~-Ll~s~~~~v~eQavWALgNIagds~~~ 186 (514)
T KOG0166|consen 115 VEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQ-LLSSPSADVREQAVWALGNIAGDSPDC 186 (514)
T ss_pred HHHHccCCChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHH-HhcCCcHHHHHHHHHHHhccccCChHH
Confidence 99999999999999999999999999999999999 99999996 899999999999999999999999863
No 4
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.33 E-value=3.3e-12 Score=140.73 Aligned_cols=116 Identities=17% Similarity=0.256 Sum_probs=97.1
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchhH
Q psy1198 125 KAQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEALPRSS 204 (249)
Q Consensus 125 rl~~Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~qT 204 (249)
-++.++..|++ +|+..|.+|+.-|..+.+.. +++.+.+...|.||.||++|++++++++|++|+|||+||++.+++++
T Consensus 190 aVp~LV~LLsS-~d~~lQ~eAa~aLa~Lass~-ee~~~aVIeaGaVP~LV~LL~sg~~~~VRE~AA~AL~nLAs~s~e~r 267 (2102)
T PLN03200 190 GVDILVKLLSS-GNSDAQANAASLLARLMMAF-ESSISKVLDAGAVKQLLKLLGQGNEVSVRAEAAGALEALSSQSKEAK 267 (2102)
T ss_pred CHHHHHHHHcC-CCHHHHHHHHHHHHHHHcCC-hHHHHHHHHCCCHHHHHHHHccCCChHHHHHHHHHHHHHhcCCHHHH
Confidence 46778888888 69999999988776554332 44666677889999999999877778999999999999999999999
Q ss_pred HHHh--ccHHHHHHHhhcCCC---------hhHHHHHHHHHHHhhhhchh
Q psy1198 205 AVVL--DAVPTFLEKLQVIQC---------MDVAEQSLTALEMLSRRHSK 243 (249)
Q Consensus 205 ~~VV--GAVPiL~~kLLsi~y---------iDVAEQALwALenISgD~p~ 243 (249)
..|+ |+||.|++ ++..+. .++.|||+|||.||+++.+.
T Consensus 268 ~~Iv~aGgIp~LI~-lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg~~~ 316 (2102)
T PLN03200 268 QAIADAGGIPALIN-ATVAPSKEFMQGEFAQALQENAMGALANICGGMSA 316 (2102)
T ss_pred HHHHHCCCHHHHHH-HHhCcchhhhccccchHHHHHHHHHHHHHhCCchh
Confidence 9999 99999997 555444 45799999999999998655
No 5
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.17 E-value=1.5e-10 Score=86.88 Aligned_cols=109 Identities=23% Similarity=0.297 Sum_probs=87.9
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchhHH
Q psy1198 126 AQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEALPRSSA 205 (249)
Q Consensus 126 l~~Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~qT~ 205 (249)
++.+++-|++ +++.....++..|.++-.. .++....+...+++|.|+++|+. ++++++..|+|+|+||+...+....
T Consensus 9 i~~l~~~l~~-~~~~~~~~a~~~l~~l~~~-~~~~~~~~~~~~~i~~l~~~l~~-~~~~v~~~a~~~L~~l~~~~~~~~~ 85 (120)
T cd00020 9 LPALVSLLSS-SDENVQREAAWALSNLSAG-NNDNIQAVVEAGGLPALVQLLKS-EDEEVVKAALWALRNLAAGPEDNKL 85 (120)
T ss_pred hHHHHHHHHc-CCHHHHHHHHHHHHHHhcC-CHHHHHHHHHCCChHHHHHHHhC-CCHHHHHHHHHHHHHHccCcHHHHH
Confidence 6677888887 4777888888888875544 23333345556999999999986 4799999999999999999887777
Q ss_pred HHh--ccHHHHHHHhhcCCChhHHHHHHHHHHHhh
Q psy1198 206 VVL--DAVPTFLEKLQVIQCMDVAEQSLTALEMLS 238 (249)
Q Consensus 206 ~VV--GAVPiL~~kLLsi~yiDVAEQALwALenIS 238 (249)
.++ |.+|.|++ ++.....++.|+++|+|.+|+
T Consensus 86 ~~~~~g~l~~l~~-~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 86 IVLEAGGVPKLVN-LLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHHHCCChHHHHH-HHhcCCHHHHHHHHHHHHHhh
Confidence 666 89999997 666678999999999999986
No 6
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=98.96 E-value=2.8e-09 Score=79.97 Aligned_cols=79 Identities=22% Similarity=0.258 Sum_probs=70.0
Q ss_pred CCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchhHHHHh--ccHHHHHHHhhcCCChhHHHHHHHHHHHhhhhc
Q psy1198 164 FPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEALPRSSAVVL--DAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRH 241 (249)
Q Consensus 164 fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~qT~~VV--GAVPiL~~kLLsi~yiDVAEQALwALenISgD~ 241 (249)
|...++||.|+++|++. ++++...|+|||.||++..|+....++ +.+|.|++ ++..++.+|++.++|+|.||+.+.
T Consensus 3 ~~~~~~i~~l~~~l~~~-~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~-~l~~~~~~v~~~a~~~L~~l~~~~ 80 (120)
T cd00020 3 VIQAGGLPALVSLLSSS-DENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQ-LLKSEDEEVVKAALWALRNLAAGP 80 (120)
T ss_pred HHHcCChHHHHHHHHcC-CHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHH-HHhCCCHHHHHHHHHHHHHHccCc
Confidence 34568999999999865 589999999999999999999988888 99999997 677788999999999999999988
Q ss_pred hhH
Q psy1198 242 SKA 244 (249)
Q Consensus 242 p~a 244 (249)
+..
T Consensus 81 ~~~ 83 (120)
T cd00020 81 EDN 83 (120)
T ss_pred HHH
Confidence 643
No 7
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=98.89 E-value=3.7e-09 Score=117.19 Aligned_cols=109 Identities=17% Similarity=0.209 Sum_probs=91.2
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchhHHHHh
Q psy1198 129 LLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEALPRSSAVVL 208 (249)
Q Consensus 129 Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~qT~~VV 208 (249)
||.-|.. .+.+.|-.+...|+.+. ..+++.+..+...+.||.||++|+++ ++++|..|+|+|-||+.++++++..|+
T Consensus 409 LV~LL~~-~~~evQ~~Av~aL~~L~-~~~~e~~~aIi~~ggIp~LV~LL~s~-s~~iQ~~A~~~L~nLa~~ndenr~aIi 485 (2102)
T PLN03200 409 LVGLITM-ATADVQEELIRALSSLC-CGKGGLWEALGGREGVQLLISLLGLS-SEQQQEYAVALLAILTDEVDESKWAIT 485 (2102)
T ss_pred hhhhhcc-CCHHHHHHHHHHHHHHh-CCCHHHHHHHHHcCcHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 4444555 47788888888887755 33455555677789999999999975 689999999999999999999998888
Q ss_pred --ccHHHHHHHhhcCCChhHHHHHHHHHHHhhhhc
Q psy1198 209 --DAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRH 241 (249)
Q Consensus 209 --GAVPiL~~kLLsi~yiDVAEQALwALenISgD~ 241 (249)
|+||.|++ |+.+++.++.|+|+|+|.||+.+.
T Consensus 486 eaGaIP~LV~-LL~s~~~~iqeeAawAL~NLa~~~ 519 (2102)
T PLN03200 486 AAGGIPPLVQ-LLETGSQKAKEDSATVLWNLCCHS 519 (2102)
T ss_pred HCCCHHHHHH-HHcCCCHHHHHHHHHHHHHHhCCc
Confidence 99999996 888899999999999999999854
No 8
>KOG0166|consensus
Probab=98.72 E-value=5.8e-08 Score=96.19 Aligned_cols=116 Identities=19% Similarity=0.288 Sum_probs=91.6
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCCCC------------------------
Q psy1198 126 AQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDH------------------------ 181 (249)
Q Consensus 126 l~~Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~e~------------------------ 181 (249)
++-|+.-|++ .|+...-.++-.++- |+...++.|..++..++||+||++|.+..
T Consensus 239 Lp~L~~ll~~-~D~~Vl~Da~WAlsy-Lsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~ 316 (514)
T KOG0166|consen 239 LPALLRLLHS-TDEEVLTDACWALSY-LTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQV 316 (514)
T ss_pred HHHHHHHHhc-CCHHHHHHHHHHHHH-HhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHH
Confidence 3444455678 488888777777765 44556788888888899999999997632
Q ss_pred ------------------CccHHHHHHHHHHHHHhcCchhHHHHh--ccHHHHHHHhhcCCChhHHHHHHHHHHHhhhhc
Q psy1198 182 ------------------NFDMMNNACRALTYMMEALPRSSAVVL--DAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRH 241 (249)
Q Consensus 182 ------------------n~dLQ~eAArALTNIasgtp~qT~~VV--GAVPiL~~kLLsi~yiDVAEQALwALenISgD~ 241 (249)
...+--||||.|.||..|+++|.+.|+ |.+|.|++ |++....|+.-.|.||+.|+...+
T Consensus 317 vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~-~l~~~ef~~rKEAawaIsN~ts~g 395 (514)
T KOG0166|consen 317 VINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLIN-LLQTAEFDIRKEAAWAISNLTSSG 395 (514)
T ss_pred HHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHH-HHhccchHHHHHHHHHHHhhcccC
Confidence 112567899999999999999999999 99999997 666666899999999999987665
Q ss_pred hhH
Q psy1198 242 SKA 244 (249)
Q Consensus 242 p~a 244 (249)
..+
T Consensus 396 ~~~ 398 (514)
T KOG0166|consen 396 TPE 398 (514)
T ss_pred CHH
Confidence 544
No 9
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=98.41 E-value=4.6e-07 Score=59.81 Aligned_cols=39 Identities=21% Similarity=0.319 Sum_probs=34.8
Q ss_pred CchhHHHHh--ccHHHHHHHhhcCCChhHHHHHHHHHHHhhh
Q psy1198 200 LPRSSAVVL--DAVPTFLEKLQVIQCMDVAEQSLTALEMLSR 239 (249)
Q Consensus 200 tp~qT~~VV--GAVPiL~~kLLsi~yiDVAEQALwALenISg 239 (249)
+|++...|+ |+||.|++ |+..++.+|.|+|+|||.||++
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~-ll~~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQ-LLKSPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHH-HTTSSSHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHcccHHHHHH-HHcCCCHHHHHHHHHHHHHHhC
Confidence 367788888 99999997 8888999999999999999984
No 10
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=98.28 E-value=5.4e-06 Score=60.52 Aligned_cols=88 Identities=30% Similarity=0.328 Sum_probs=68.8
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchhHH
Q psy1198 126 AQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEALPRSSA 205 (249)
Q Consensus 126 l~~Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~qT~ 205 (249)
++.|++.|.++.|+..+..++.-|++ +....++|.|+++|+ ++++.++..|+|+|-+|-+ +
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~------------~~~~~~~~~L~~~l~-d~~~~vr~~a~~aL~~i~~--~---- 61 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGE------------LGDPEAIPALIELLK-DEDPMVRRAAARALGRIGD--P---- 61 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHC------------CTHHHHHHHHHHHHT-SSSHHHHHHHHHHHHCCHH--H----
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHH------------cCCHhHHHHHHHHHc-CCCHHHHHHHHHHHHHhCC--H----
Confidence 46788889444689999888887772 233478999999995 5689999999999999832 2
Q ss_pred HHhccHHHHHHHhhcCCChhHHHHHHHHHH
Q psy1198 206 VVLDAVPTFLEKLQVIQCMDVAEQSLTALE 235 (249)
Q Consensus 206 ~VVGAVPiL~~kLLsi~yiDVAEQALwALe 235 (249)
.++|.|++.|.+.+...|++.|+++|+
T Consensus 62 ---~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 62 ---EAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp ---HTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 478999986666666778999999985
No 11
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=98.26 E-value=1.5e-06 Score=59.91 Aligned_cols=54 Identities=22% Similarity=0.153 Sum_probs=47.8
Q ss_pred ccHHHHHHHHHHHHHhcCchhHHHHh-ccHHHHHHHhhcCCChhHHHHHHHHHHHh
Q psy1198 183 FDMMNNACRALTYMMEALPRSSAVVL-DAVPTFLEKLQVIQCMDVAEQSLTALEML 237 (249)
Q Consensus 183 ~dLQ~eAArALTNIasgtp~qT~~VV-GAVPiL~~kLLsi~yiDVAEQALwALenI 237 (249)
|.++..|+|+|-+|++..++.....+ ..+|.|+. ++..+..+|++.|+|||++|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~-~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIP-LLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHH-HTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHhcC
Confidence 46788999999999999999998888 99999997 44556679999999999987
No 12
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=98.03 E-value=8.3e-06 Score=59.54 Aligned_cols=63 Identities=29% Similarity=0.393 Sum_probs=52.9
Q ss_pred HHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchhHHHHhccHHHHHHHhhcCCChhHHHHHHHHHHHhhhhch
Q psy1198 170 VPALITLLSMDHNFDMMNNACRALTYMMEALPRSSAVVLDAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRHS 242 (249)
Q Consensus 170 VP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~qT~~VVGAVPiL~~kLLsi~yiDVAEQALwALenISgD~p 242 (249)
||.|++.|..+.++.++..|+|+|.++-+ + .++|.|++ +++.++.+|+.+|+|+|++|-.+..
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~~--~-------~~~~~L~~-~l~d~~~~vr~~a~~aL~~i~~~~~ 63 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELGD--P-------EAIPALIE-LLKDEDPMVRRAAARALGRIGDPEA 63 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCTH--H-------HHHHHHHH-HHTSSSHHHHHHHHHHHHCCHHHHT
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcCC--H-------hHHHHHHH-HHcCCCHHHHHHHHHHHHHhCCHHH
Confidence 68999999778899999999999996643 2 56899997 5578999999999999999964433
No 13
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=97.91 E-value=1.4e-05 Score=77.43 Aligned_cols=112 Identities=13% Similarity=0.175 Sum_probs=92.2
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchhHH
Q psy1198 126 AQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEALPRSSA 205 (249)
Q Consensus 126 l~~Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~qT~ 205 (249)
++-|..-|++ .|+.....|+=.++- ||-..++-|+.+...++.++||++|+++ +..+|--|-|.+-||.-|+-.||.
T Consensus 245 lpiL~KLiys-~D~evlvDA~WAiSY-lsDg~~E~i~avld~g~~~RLvElLs~~-sa~iqtPalR~vGNIVTG~D~QTq 321 (526)
T COG5064 245 LPILAKLIYS-RDPEVLVDACWAISY-LSDGPNEKIQAVLDVGIPGRLVELLSHE-SAKIQTPALRSVGNIVTGSDDQTQ 321 (526)
T ss_pred HHHHHHHHhh-cCHHHHHHHHHHHHH-hccCcHHHHHHHHhcCCcHHHHHHhcCc-cccccCHHHHhhcCeeecCcccee
Confidence 3444445678 488888777766653 4555566677777779999999999975 478899999999999999999999
Q ss_pred HHh--ccHHHHHHHhhcCCChhHHHHHHHHHHHhhhhc
Q psy1198 206 VVL--DAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRH 241 (249)
Q Consensus 206 ~VV--GAVPiL~~kLLsi~yiDVAEQALwALenISgD~ 241 (249)
+++ |+++.|.. ||+++...++..+.|++-||..-.
T Consensus 322 viI~~G~L~a~~~-lLs~~ke~irKEaCWTiSNITAGn 358 (526)
T COG5064 322 VIINCGALKAFRS-LLSSPKENIRKEACWTISNITAGN 358 (526)
T ss_pred hheecccHHHHHH-HhcChhhhhhhhhheeecccccCC
Confidence 999 99999996 889999999999999999997543
No 14
>KOG4224|consensus
Probab=97.77 E-value=4.7e-05 Score=74.28 Aligned_cols=117 Identities=18% Similarity=0.181 Sum_probs=84.9
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchhH
Q psy1198 125 KAQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEALPRSS 204 (249)
Q Consensus 125 rl~~Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~qT 204 (249)
.++-+|..+++ .|++.|.-+++.+..+-.-...--+-.-....+||.||.++.. .++.++..|.-||-||++-+..|-
T Consensus 209 ~lpvLVsll~s-~d~dvqyycttaisnIaVd~~~Rk~Laqaep~lv~~Lv~Lmd~-~s~kvkcqA~lALrnlasdt~Yq~ 286 (550)
T KOG4224|consen 209 GLPVLVSLLKS-GDLDVQYYCTTAISNIAVDRRARKILAQAEPKLVPALVDLMDD-GSDKVKCQAGLALRNLASDTEYQR 286 (550)
T ss_pred Cchhhhhhhcc-CChhHHHHHHHHhhhhhhhHHHHHHHHhcccchHHHHHHHHhC-CChHHHHHHHHHHhhhcccchhhh
Confidence 35667888888 5999998888776543322111111000012499999999975 468999999999999999999888
Q ss_pred HHHh-ccHHHHHHHhhcCCChhHHHHHHHHHHHhhhhchhH
Q psy1198 205 AVVL-DAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRHSKA 244 (249)
Q Consensus 205 ~~VV-GAVPiL~~kLLsi~yiDVAEQALwALenISgD~p~a 244 (249)
..|- |++|.+++ |+.++++-+--..+-|+.|||--...+
T Consensus 287 eiv~ag~lP~lv~-Llqs~~~plilasVaCIrnisihplNe 326 (550)
T KOG4224|consen 287 EIVEAGSLPLLVE-LLQSPMGPLILASVACIRNISIHPLNE 326 (550)
T ss_pred HHHhcCCchHHHH-HHhCcchhHHHHHHHHHhhcccccCcc
Confidence 7666 99999996 778888666666889999998644333
No 15
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=97.70 E-value=5e-05 Score=50.02 Aligned_cols=34 Identities=21% Similarity=0.286 Sum_probs=29.6
Q ss_pred CCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHh
Q psy1198 164 FPVKQVVPALITLLSMDHNFDMMNNACRALTYMME 198 (249)
Q Consensus 164 fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIas 198 (249)
+...|.||.|+++|+ +.++++|.+|+|||.||++
T Consensus 8 i~~~g~i~~Lv~ll~-~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 8 IVEAGGIPPLVQLLK-SPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp HHHTTHHHHHHHHTT-SSSHHHHHHHHHHHHHHHT
T ss_pred HHHcccHHHHHHHHc-CCCHHHHHHHHHHHHHHhC
Confidence 345699999999999 4679999999999999974
No 16
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=97.63 E-value=0.00035 Score=63.71 Aligned_cols=59 Identities=20% Similarity=0.183 Sum_probs=47.9
Q ss_pred CccHHHHHHHHHHHHHhcCchhHHHHhccHHHHHHHhhcCCChhHHHHHHHHHHHhhhhch
Q psy1198 182 NFDMMNNACRALTYMMEALPRSSAVVLDAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRHS 242 (249)
Q Consensus 182 n~dLQ~eAArALTNIasgtp~qT~~VVGAVPiL~~kLLsi~yiDVAEQALwALenISgD~p 242 (249)
+.++|..+-|+|+|| +.+++.-..+...||.|++ |+...+..+.+|+|++|-|+|....
T Consensus 108 ns~~Q~agLrlL~nL-tv~~~~~~~l~~~i~~ll~-LL~~G~~~~k~~vLk~L~nLS~np~ 166 (254)
T PF04826_consen 108 NSEVQLAGLRLLTNL-TVTNDYHHMLANYIPDLLS-LLSSGSEKTKVQVLKVLVNLSENPD 166 (254)
T ss_pred CCHHHHHHHHHHHcc-CCCcchhhhHHhhHHHHHH-HHHcCChHHHHHHHHHHHHhccCHH
Confidence 578999999999999 4555554444499999996 7888899999999999999997543
No 17
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=97.60 E-value=0.00012 Score=46.57 Aligned_cols=37 Identities=24% Similarity=0.318 Sum_probs=31.2
Q ss_pred hhHHHHh--ccHHHHHHHhhcCCChhHHHHHHHHHHHhhh
Q psy1198 202 RSSAVVL--DAVPTFLEKLQVIQCMDVAEQSLTALEMLSR 239 (249)
Q Consensus 202 ~qT~~VV--GAVPiL~~kLLsi~yiDVAEQALwALenISg 239 (249)
+....++ |+||.|++ |+..++.++.++++|+|.||+.
T Consensus 3 ~~~~~i~~~g~i~~L~~-ll~~~~~~i~~~a~~aL~nl~~ 41 (41)
T smart00185 3 EQKQAVVDAGGLPALVE-LLKSEDEEVVKEAAWALSNLSS 41 (41)
T ss_pred HHHHHHHHCCCHHHHHH-HHcCCCHHHHHHHHHHHHHHcC
Confidence 4455566 99999997 7778899999999999999973
No 18
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=97.31 E-value=0.00078 Score=61.44 Aligned_cols=77 Identities=22% Similarity=0.168 Sum_probs=64.5
Q ss_pred CccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchhHHHHh---ccHHHHHHHhhcCCChhHHHHHHHHHHHhhhhc
Q psy1198 165 PVKQVVPALITLLSMDHNFDMMNNACRALTYMMEALPRSSAVVL---DAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRH 241 (249)
Q Consensus 165 p~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~qT~~VV---GAVPiL~~kLLsi~yiDVAEQALwALenISgD~ 241 (249)
...+-+..|+.+|+..++|.+|-.|..+|.|. .++| .++.++ |.||.+.. |++.++..+.|+++|||.|+|.+.
T Consensus 9 l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~-aaf~-~nq~~Ir~~Ggi~lI~~-lL~~p~~~vr~~AL~aL~Nls~~~ 85 (254)
T PF04826_consen 9 LEAQELQKLLCLLESTEDPFIQEKALIALGNS-AAFP-FNQDIIRDLGGISLIGS-LLNDPNPSVREKALNALNNLSVND 85 (254)
T ss_pred cCHHHHHHHHHHHhcCCChHHHHHHHHHHHhh-ccCh-hHHHHHHHcCCHHHHHH-HcCCCChHHHHHHHHHHHhcCCCh
Confidence 34566799999999888899999999999996 4566 555555 99999996 888899999999999999999876
Q ss_pred hhH
Q psy1198 242 SKA 244 (249)
Q Consensus 242 p~a 244 (249)
...
T Consensus 86 en~ 88 (254)
T PF04826_consen 86 ENQ 88 (254)
T ss_pred hhH
Confidence 543
No 19
>KOG1048|consensus
Probab=97.31 E-value=0.00039 Score=71.70 Aligned_cols=113 Identities=23% Similarity=0.255 Sum_probs=86.7
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCch--
Q psy1198 125 KAQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEALPR-- 202 (249)
Q Consensus 125 rl~~Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~-- 202 (249)
.+++.+..|.+ .|+..|..|--. -++|++.++..-..+-.-+=||.||.+|.+ .+.++|..|||||=|+.-+...
T Consensus 234 ~lpe~i~mL~~-q~~~~qsnaaay-lQHlcfgd~~ik~~vrqlggI~kLv~Ll~~-~~~evq~~acgaLRNLvf~~~~~~ 310 (717)
T KOG1048|consen 234 TLPEVISMLMS-QDPSVQSNAAAY-LQHLCFGDNKIKSRVRQLGGIPKLVALLDH-RNDEVQRQACGALRNLVFGKSTDS 310 (717)
T ss_pred ccHHHHHHHhc-cChhhhHHHHHH-HHHHHhhhHHHHHHHHHhccHHHHHHHhcC-CcHHHHHHHHHHHHhhhcccCCcc
Confidence 45777888887 588888755332 355666554443345555889999999975 5799999999999999998887
Q ss_pred hHHHHh--ccHHHHHHHhhcCCChhHHHHHHHHHHHhhhh
Q psy1198 203 SSAVVL--DAVPTFLEKLQVIQCMDVAEQSLTALEMLSRR 240 (249)
Q Consensus 203 qT~~VV--GAVPiL~~kLLsi~yiDVAEQALwALenISgD 240 (249)
.--+|. +-||.+++.|-.+.+.||+|++--+|=|+|--
T Consensus 311 NKlai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~ 350 (717)
T KOG1048|consen 311 NKLAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSN 350 (717)
T ss_pred cchhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccch
Confidence 444455 99999999888889999999998888777653
No 20
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=97.29 E-value=0.001 Score=68.73 Aligned_cols=109 Identities=23% Similarity=0.259 Sum_probs=79.0
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchhHH
Q psy1198 126 AQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEALPRSSA 205 (249)
Q Consensus 126 l~~Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~qT~ 205 (249)
++-|+..|.+ +++...+.++.-|.+ ||.-. ++-+.+...++||.|+++|..+ +.+++..+.|+|.|+..- ++--.
T Consensus 292 V~~Lv~~Ldr-~n~ellil~v~fLkk-LSi~~-ENK~~m~~~giV~kL~kLl~s~-~~~l~~~aLrlL~NLSfd-~~~R~ 366 (708)
T PF05804_consen 292 VSLLVKCLDR-ENEELLILAVTFLKK-LSIFK-ENKDEMAESGIVEKLLKLLPSE-NEDLVNVALRLLFNLSFD-PELRS 366 (708)
T ss_pred HHHHHHHHcC-CCHHHHHHHHHHHHH-HcCCH-HHHHHHHHcCCHHHHHHHhcCC-CHHHHHHHHHHHHHhCcC-HHHHH
Confidence 3556667777 466666656665544 55532 2334466789999999999875 589999999999999764 33445
Q ss_pred HHh--ccHHHHHHHhhcCCChhHHHHHHHHHHHhhhhch
Q psy1198 206 VVL--DAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRHS 242 (249)
Q Consensus 206 ~VV--GAVPiL~~kLLsi~yiDVAEQALwALenISgD~p 242 (249)
.+| |.||.|+. |+.. .+..+=|+..|.+||.|..
T Consensus 367 ~mV~~GlIPkLv~-LL~d--~~~~~val~iLy~LS~dd~ 402 (708)
T PF05804_consen 367 QMVSLGLIPKLVE-LLKD--PNFREVALKILYNLSMDDE 402 (708)
T ss_pred HHHHCCCcHHHHH-HhCC--CchHHHHHHHHHHhccCHh
Confidence 566 99999997 5553 3566679999999998743
No 21
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=97.17 E-value=0.00032 Score=44.61 Aligned_cols=34 Identities=24% Similarity=0.314 Sum_probs=29.0
Q ss_pred CCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHh
Q psy1198 164 FPVKQVVPALITLLSMDHNFDMMNNACRALTYMME 198 (249)
Q Consensus 164 fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIas 198 (249)
+...+.+|.|+++|+. ++++++..|+|+|.||+.
T Consensus 8 i~~~g~i~~L~~ll~~-~~~~i~~~a~~aL~nl~~ 41 (41)
T smart00185 8 VVDAGGLPALVELLKS-EDEEVVKEAAWALSNLSS 41 (41)
T ss_pred HHHCCCHHHHHHHHcC-CCHHHHHHHHHHHHHHcC
Confidence 4456799999999984 579999999999999973
No 22
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=96.86 E-value=0.0068 Score=59.63 Aligned_cols=106 Identities=15% Similarity=0.152 Sum_probs=81.0
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchhHHHHh
Q psy1198 129 LLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEALPRSSAVVL 208 (249)
Q Consensus 129 Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~qT~~VV 208 (249)
|++.|++. +......++.-|.++|.... + +.. ...+.+.|...|.++ ++.++..++|.|-++..........++
T Consensus 43 lf~~L~~~-~~e~v~~~~~iL~~~l~~~~--~-~~l-~~~~~~~L~~gL~h~-~~~Vr~l~l~~l~~~~~~~~~~~~~~~ 116 (503)
T PF10508_consen 43 LFDCLNTS-NREQVELICDILKRLLSALS--P-DSL-LPQYQPFLQRGLTHP-SPKVRRLALKQLGRIARHSEGAAQLLV 116 (503)
T ss_pred HHHHHhhc-ChHHHHHHHHHHHHHHhccC--H-HHH-HHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHhcCCHHHHHHhc
Confidence 56677763 55554455566777776431 1 122 457889999999864 699999999999999988777677676
Q ss_pred --ccHHHHHHHhhcCCChhHHHHHHHHHHHhhhhc
Q psy1198 209 --DAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRH 241 (249)
Q Consensus 209 --GAVPiL~~kLLsi~yiDVAEQALwALenISgD~ 241 (249)
+.+|.++. ++..++.+|++.|+.+|.+|+...
T Consensus 117 ~~~l~~~i~~-~L~~~d~~Va~~A~~~L~~l~~~~ 150 (503)
T PF10508_consen 117 DNELLPLIIQ-CLRDPDLSVAKAAIKALKKLASHP 150 (503)
T ss_pred CccHHHHHHH-HHcCCcHHHHHHHHHHHHHHhCCc
Confidence 88999997 667799999999999999999744
No 23
>KOG4224|consensus
Probab=96.84 E-value=0.0096 Score=58.60 Aligned_cols=107 Identities=19% Similarity=0.178 Sum_probs=74.1
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhhcC--CCCCCCCCCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchh
Q psy1198 126 AQQLLVSLQAIGDEDQQLQAVVEMCQMLVMG--NEDTLTGFPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEALPRS 203 (249)
Q Consensus 126 l~~Ll~~L~S~~D~~~QLeAL~eLrelLSms--nep~I~~fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~q 203 (249)
++-+|+-|++. --...++.+--+| .+++. |+-+ +...||+..||.+|...+|.++|..|...|-|++--.-..
T Consensus 294 lP~lv~Llqs~-~~plilasVaCIr-nisihplNe~l---I~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n 368 (550)
T KOG4224|consen 294 LPLLVELLQSP-MGPLILASVACIR-NISIHPLNEVL---IADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHN 368 (550)
T ss_pred chHHHHHHhCc-chhHHHHHHHHHh-hcccccCcccc---eecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhh
Confidence 45566666652 2223334443333 34442 2222 4556999999999999999999999999999999766666
Q ss_pred HHHHh--ccHHHHHHHhhcCCChhHHHHHHHHHHHhh
Q psy1198 204 SAVVL--DAVPTFLEKLQVIQCMDVAEQSLTALEMLS 238 (249)
Q Consensus 204 T~~VV--GAVPiL~~kLLsi~yiDVAEQALwALenIS 238 (249)
..++. ||||.|.+.|++. ...|.|..--|+-.++
T Consensus 369 ~~~i~esgAi~kl~eL~lD~-pvsvqseisac~a~La 404 (550)
T KOG4224|consen 369 VSVIRESGAIPKLIELLLDG-PVSVQSEISACIAQLA 404 (550)
T ss_pred hHHHhhcCchHHHHHHHhcC-ChhHHHHHHHHHHHHH
Confidence 66666 9999999977775 4678877666665544
No 24
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=96.83 E-value=0.0021 Score=66.49 Aligned_cols=88 Identities=19% Similarity=0.190 Sum_probs=71.4
Q ss_pred HhhcCCCCCCCC-CCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchhHHHHh--ccHHHHHHHhhcCCChhHHH
Q psy1198 152 MLVMGNEDTLTG-FPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEALPRSSAVVL--DAVPTFLEKLQVIQCMDVAE 228 (249)
Q Consensus 152 lLSmsnep~I~~-fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~qT~~VV--GAVPiL~~kLLsi~yiDVAE 228 (249)
+|.++.++.+.. +-..++|+.||++|+++ ++++...+.++|.++ +.+.+....++ |+||.|+ ||+.+++.|+.+
T Consensus 273 LlNLAed~~ve~kM~~~~iV~~Lv~~Ldr~-n~ellil~v~fLkkL-Si~~ENK~~m~~~giV~kL~-kLl~s~~~~l~~ 349 (708)
T PF05804_consen 273 LLNLAEDPRVELKMVNKGIVSLLVKCLDRE-NEELLILAVTFLKKL-SIFKENKDEMAESGIVEKLL-KLLPSENEDLVN 349 (708)
T ss_pred HHHHhcChHHHHHHHhcCCHHHHHHHHcCC-CHHHHHHHHHHHHHH-cCCHHHHHHHHHcCCHHHHH-HHhcCCCHHHHH
Confidence 444554444442 55679999999999875 789999999999987 45677777677 9999999 599999999999
Q ss_pred HHHHHHHHhhhhch
Q psy1198 229 QSLTALEMLSRRHS 242 (249)
Q Consensus 229 QALwALenISgD~p 242 (249)
.++++|-|+|-|.-
T Consensus 350 ~aLrlL~NLSfd~~ 363 (708)
T PF05804_consen 350 VALRLLFNLSFDPE 363 (708)
T ss_pred HHHHHHHHhCcCHH
Confidence 99999999997753
No 25
>KOG2171|consensus
Probab=96.64 E-value=0.0058 Score=65.58 Aligned_cols=113 Identities=20% Similarity=0.154 Sum_probs=82.4
Q ss_pred HHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchhHHHHh--
Q psy1198 131 VSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEALPRSSAVVL-- 208 (249)
Q Consensus 131 ~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~qT~~VV-- 208 (249)
..|++ .+|..+..|+..+-++= -.-.|.+...-.+.+.|.|+..|....++.+|..||-||-|..+..+...-.=.
T Consensus 396 ~~l~D-phprVr~AA~naigQ~s-tdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd 473 (1075)
T KOG2171|consen 396 NGLND-PHPRVRYAALNAIGQMS-TDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLD 473 (1075)
T ss_pred hhcCC-CCHHHHHHHHHHHHhhh-hhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHH
Confidence 34566 68888998888877642 222344444434678889999999999999999999999999997775432111
Q ss_pred ccHHHHHHHhhcCCChhHHHHHHHHHHHhhhhchhHH
Q psy1198 209 DAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRHSKAI 245 (249)
Q Consensus 209 GAVPiL~~kLLsi~yiDVAEQALwALenISgD~p~aI 245 (249)
+.+..+...|++..+..|.||++.||+-||-......
T Consensus 474 ~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~~F 510 (1075)
T KOG2171|consen 474 GLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQEKF 510 (1075)
T ss_pred HHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhh
Confidence 4444333356788999999999999999987655543
No 26
>PRK09687 putative lyase; Provisional
Probab=96.29 E-value=0.041 Score=50.51 Aligned_cols=103 Identities=17% Similarity=0.053 Sum_probs=61.1
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCc-----
Q psy1198 127 QQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEALP----- 201 (249)
Q Consensus 127 ~~Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp----- 201 (249)
..++.-+++ +|+.....+..-|.++ -.. +. +....+|.|..++.++.++++...|+.+|-++.+..+
T Consensus 57 ~~l~~ll~~-~d~~vR~~A~~aLg~l-g~~--~~----~~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~~~~ 128 (280)
T PRK09687 57 RLAIELCSS-KNPIERDIGADILSQL-GMA--KR----CQDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLYSPK 128 (280)
T ss_pred HHHHHHHhC-CCHHHHHHHHHHHHhc-CCC--cc----chHHHHHHHHHHHhcCCCHHHHHHHHHHHhcccccccccchH
Confidence 333333455 5777777777666662 111 00 0234667777765556667777777777777643221
Q ss_pred --h-----------hHHH-Hh---------ccHHHHHHHhhcCCChhHHHHHHHHHHHhh
Q psy1198 202 --R-----------SSAV-VL---------DAVPTFLEKLQVIQCMDVAEQSLTALEMLS 238 (249)
Q Consensus 202 --~-----------qT~~-VV---------GAVPiL~~kLLsi~yiDVAEQALwALenIS 238 (249)
+ .++. ++ -+||.|++ ++.-++.+|+..|+++|++|.
T Consensus 129 a~~~l~~~~~D~~~~VR~~a~~aLg~~~~~~ai~~L~~-~L~d~~~~VR~~A~~aLg~~~ 187 (280)
T PRK09687 129 IVEQSQITAFDKSTNVRFAVAFALSVINDEAAIPLLIN-LLKDPNGDVRNWAAFALNSNK 187 (280)
T ss_pred HHHHHHHHhhCCCHHHHHHHHHHHhccCCHHHHHHHHH-HhcCCCHHHHHHHHHHHhcCC
Confidence 0 1111 11 56888886 556677789999999999883
No 27
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=96.29 E-value=0.0065 Score=52.05 Aligned_cols=115 Identities=22% Similarity=0.289 Sum_probs=73.4
Q ss_pred HHHHHHHH---hcCCCHHHHHHHHHHHHHHhhcC-CCCCCCCCC--ccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhc
Q psy1198 126 AQQLLVSL---QAIGDEDQQLQAVVEMCQMLVMG-NEDTLTGFP--VKQVVPALITLLSMDHNFDMMNNACRALTYMMEA 199 (249)
Q Consensus 126 l~~Ll~~L---~S~~D~~~QLeAL~eLrelLSms-nep~I~~fp--~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasg 199 (249)
+++|+..+ .++.|=..+.++++.|+.++.-. .++..+.|. ...+++.++..++ +.+..+.-+||.+|..|+..
T Consensus 5 ~~~~~~~l~~~~~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~-d~Rs~v~~~A~~~l~~l~~~ 83 (228)
T PF12348_consen 5 FEEILAALEKKESESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLS-DLRSKVSKTACQLLSDLARQ 83 (228)
T ss_dssp -GGS-TTHHHHHT-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S--HH---HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHh-hhHHHHHHHHHHHHHHHHHH
Confidence 44444444 44457888999999999998764 111111111 1134445555554 34678999999999999999
Q ss_pred CchhHHHHh-ccHHHHHHHhhcCCChhHHHHHHHHHHHhhhhch
Q psy1198 200 LPRSSAVVL-DAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRHS 242 (249)
Q Consensus 200 tp~qT~~VV-GAVPiL~~kLLsi~yiDVAEQALwALenISgD~p 242 (249)
+.......+ -.+|.|++++-+ +..-+++.|..||..|....+
T Consensus 84 l~~~~~~~~~~~l~~Ll~~~~~-~~~~i~~~a~~~L~~i~~~~~ 126 (228)
T PF12348_consen 84 LGSHFEPYADILLPPLLKKLGD-SKKFIREAANNALDAIIESCS 126 (228)
T ss_dssp HGGGGHHHHHHHHHHHHHGGG----HHHHHHHHHHHHHHHTTS-
T ss_pred HhHhHHHHHHHHHHHHHHHHcc-ccHHHHHHHHHHHHHHHHHCC
Confidence 999987778 899999975544 667899999999999998877
No 28
>KOG2160|consensus
Probab=96.28 E-value=0.043 Score=52.70 Aligned_cols=113 Identities=18% Similarity=0.190 Sum_probs=86.3
Q ss_pred HHHHh-cCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchhHHHHh
Q psy1198 130 LVSLQ-AIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEALPRSSAVVL 208 (249)
Q Consensus 130 l~~L~-S~~D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~qT~~VV 208 (249)
...++ +.-|+.....|+.+|.++.-- =|+-..|..-+..+.++..|++ .++.|--.|||.|+.++.-+|..-..|+
T Consensus 87 ~~~~~~~s~~le~ke~ald~Le~lve~--iDnAndl~~~ggl~~ll~~l~~-~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~ 163 (342)
T KOG2160|consen 87 IVILNSSSVDLEDKEDALDNLEELVED--IDNANDLISLGGLVPLLGYLEN-SDAELRELAARVIGTAVQNNPKSQEQVI 163 (342)
T ss_pred hhccCcccCCHHHHHHHHHHHHHHHHh--hhhHHhHhhccCHHHHHHHhcC-CcHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 34444 234777788888888776632 1222235555666666668875 4699999999999999999999988888
Q ss_pred --ccHHHHHHHhhcCCChhHHHHHHHHHHHhhhhchhHH
Q psy1198 209 --DAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRHSKAI 245 (249)
Q Consensus 209 --GAVPiL~~kLLsi~yiDVAEQALwALenISgD~p~aI 245 (249)
|+.+.|...|-..+++++.-+||-|+..+.+.++..+
T Consensus 164 E~~~L~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~ 202 (342)
T KOG2160|consen 164 ELGALSKLLKILSSDDPNTVRTKALFAISSLIRNNKPGQ 202 (342)
T ss_pred HcccHHHHHHHHccCCCchHHHHHHHHHHHHHhcCcHHH
Confidence 9999999877777889999999999999988877654
No 29
>PF01749 IBB: Importin beta binding domain; InterPro: IPR002652 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. Members of the importin-alpha (karyopherin-alpha) family can form heterodimers with importin-beta. As part of a heterodimer, importin-beta mediates interactions with the pore complex, while importin-alpha acts as an adaptor protein to bind the nuclear localisation signal (NLS) on the cargo through the classical NLS import of proteins. Proteins can contain one (monopartite) or two (bipartite) NLS motifs. Importin-alpha contains several armadillo (ARM) repeats, which produce a curving structure with two NLS-binding sites, a major one close to the N terminus and a minor one close to the C terminus. Ran GTPase helps to control the unidirectional transfer of cargo. The cytoplasm contains primarily RanGDP and the nucleus RanGTP through the actions of RanGAP and RanGEF, respectively. In the nucleus, RanGTP binds to importin-beta within the importin/cargo complex, causing a conformational change in importin-beta that releases it from importin-alpha-bound cargo. The N-terminal importin-beta-binding (IBB) domain of importin-alpha contains an auto-regulatory region that mimics the NLS motif []. The release of importin-beta frees the auto-regulatory region on importin-alpha to loop back and bind to the major NLS-binding site, causing the cargo to be released []. This entry represents the N-terminal IBB domain of importin-alpha that contains the auto-regulatory region. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0008565 protein transporter activity, 0006606 protein import into nucleus, 0006886 intracellular protein transport, 0005634 nucleus, 0005737 cytoplasm; PDB: 1BK5_B 1UN0_A 1WA5_B 2C1T_A 1EE4_A 1BK6_A 1EE5_A 3TJ3_A 2JDQ_A 3FEY_C ....
Probab=96.28 E-value=0.0026 Score=50.13 Aligned_cols=54 Identities=9% Similarity=0.160 Sum_probs=34.2
Q ss_pred cchhHHHHhhCCCC--CCCCCCcc---Ccc--chhhHHHHHHHHHHHhcCCCHHHHHHHHHH
Q psy1198 94 TSLLSGVASSSSGP--SHAPGAAL---DSE--SEDTATKAQQLLVSLQAIGDEDQQLQAVVE 148 (249)
Q Consensus 94 ~~r~q~Llkrr~l~--~~~~gs~~---~~~--~s~~~~rl~~Ll~~L~S~~D~~~QLeAL~e 148 (249)
.||++.|+|||++. ++...... ... .......++.||.+++| +|+..||+|+++
T Consensus 37 ~KReE~l~KRRn~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~~v~S-~d~~~ql~Atq~ 97 (97)
T PF01749_consen 37 QKREEQLQKRRNINMADEESSSEESESDQNSSAQQLNEELPEMVAGVNS-DDPEVQLEATQQ 97 (97)
T ss_dssp HHHHCCHSCCHT-----------------TCCCCS--HHHHHHHHHHTS-SCHHHHHHHHHH
T ss_pred HHHHHHHHhhcCCCCCccccccccccccccccccccccccHHHHHhcCC-CCHHHHHHhhCC
Confidence 49999999999975 22211111 111 24556778899999999 699999999874
No 30
>PRK09687 putative lyase; Provisional
Probab=96.25 E-value=0.031 Score=51.28 Aligned_cols=63 Identities=24% Similarity=0.247 Sum_probs=39.8
Q ss_pred cChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchhHHHHhccHHHHHHHhhcCCChhHHHHHHHHHHHhh
Q psy1198 167 KQVVPALITLLSMDHNFDMMNNACRALTYMMEALPRSSAVVLDAVPTFLEKLQVIQCMDVAEQSLTALEMLS 238 (249)
Q Consensus 167 ~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~qT~~VVGAVPiL~~kLLsi~yiDVAEQALwALenIS 238 (249)
...+|.|+.+|+. .++++...|+++|-+|....| .++|.|++ ++.-++.+|+.-|+|+|++|-
T Consensus 158 ~~ai~~L~~~L~d-~~~~VR~~A~~aLg~~~~~~~-------~~~~~L~~-~L~D~~~~VR~~A~~aLg~~~ 220 (280)
T PRK09687 158 EAAIPLLINLLKD-PNGDVRNWAAFALNSNKYDNP-------DIREAFVA-MLQDKNEEIRIEAIIGLALRK 220 (280)
T ss_pred HHHHHHHHHHhcC-CCHHHHHHHHHHHhcCCCCCH-------HHHHHHHH-HhcCCChHHHHHHHHHHHccC
Confidence 4567777777764 456777777777777733333 34556664 445566667777777776653
No 31
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=96.25 E-value=0.014 Score=45.80 Aligned_cols=82 Identities=15% Similarity=0.246 Sum_probs=64.6
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchh
Q psy1198 124 TKAQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEALPRS 203 (249)
Q Consensus 124 ~rl~~Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~q 203 (249)
..+++++..|++ +.+..+-.+|..|++++...+++. .....++..|...|++++ +=+=+-|.++|..+++..|+.
T Consensus 3 ~~~~~al~~L~d-p~~PvRa~gL~~L~~Li~~~~~~~---~~~~~il~l~l~~L~d~D-syVYL~aI~~L~~La~~~p~~ 77 (92)
T PF10363_consen 3 ETLQEALSDLND-PLPPVRAHGLVLLRKLIESKSEPV---IDIPKILDLFLSQLKDED-SYVYLNAIKGLAALADRHPDE 77 (92)
T ss_pred HHHHHHHHHccC-CCcchHHHHHHHHHHHHHcCCcch---hhHHHHHHHHHHHcCCCC-chHHHHHHHHHHHHHHHChHH
Confidence 568899999998 688899999999999997754122 334578888888888654 667789999999999999873
Q ss_pred HHHHhccHHHHHH
Q psy1198 204 SAVVLDAVPTFLE 216 (249)
Q Consensus 204 T~~VVGAVPiL~~ 216 (249)
.+|.|++
T Consensus 78 ------vl~~L~~ 84 (92)
T PF10363_consen 78 ------VLPILLD 84 (92)
T ss_pred ------HHHHHHH
Confidence 3577776
No 32
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=96.04 E-value=0.063 Score=52.92 Aligned_cols=113 Identities=13% Similarity=0.132 Sum_probs=85.2
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchhHHH
Q psy1198 127 QQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEALPRSSAV 206 (249)
Q Consensus 127 ~~Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~qT~~ 206 (249)
+.+..+|++ +++..+.-++.++++++-.. +..+.-+...+++|.++.+|..+ +.++...|+.+|.+|++- +.....
T Consensus 80 ~~L~~gL~h-~~~~Vr~l~l~~l~~~~~~~-~~~~~~~~~~~l~~~i~~~L~~~-d~~Va~~A~~~L~~l~~~-~~~~~~ 155 (503)
T PF10508_consen 80 PFLQRGLTH-PSPKVRRLALKQLGRIARHS-EGAAQLLVDNELLPLIIQCLRDP-DLSVAKAAIKALKKLASH-PEGLEQ 155 (503)
T ss_pred HHHHHHhcC-CCHHHHHHHHHHHHHHhcCC-HHHHHHhcCccHHHHHHHHHcCC-cHHHHHHHHHHHHHHhCC-chhHHH
Confidence 344567887 58888888999998877432 33334466789999999999754 589999999999999984 445555
Q ss_pred Hh--ccHHHHHHHhhcCCChhHHHHHHHHHHHhhhhchhH
Q psy1198 207 VL--DAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRHSKA 244 (249)
Q Consensus 207 VV--GAVPiL~~kLLsi~yiDVAEQALwALenISgD~p~a 244 (249)
++ +.++.|.+ |+.-++..++=++++++-+|+.-++..
T Consensus 156 l~~~~~~~~L~~-l~~~~~~~vR~Rv~el~v~i~~~S~~~ 194 (503)
T PF10508_consen 156 LFDSNLLSKLKS-LMSQSSDIVRCRVYELLVEIASHSPEA 194 (503)
T ss_pred HhCcchHHHHHH-HHhccCHHHHHHHHHHHHHHHhcCHHH
Confidence 65 77888886 665556667778999999988766553
No 33
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=95.94 E-value=0.062 Score=56.43 Aligned_cols=98 Identities=21% Similarity=0.194 Sum_probs=67.8
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchhH
Q psy1198 125 KAQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEALPRSS 204 (249)
Q Consensus 125 rl~~Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~qT 204 (249)
.++.|++.|++ +|+.....|++.|.++- ...++|.|++.|+ ++++++...|+.+|..|.+..+...
T Consensus 622 ~~~~L~~~L~D-~d~~VR~~Av~~L~~~~------------~~~~~~~L~~aL~-D~d~~VR~~Aa~aL~~l~~~~~~~~ 687 (897)
T PRK13800 622 SVAELAPYLAD-PDPGVRRTAVAVLTETT------------PPGFGPALVAALG-DGAAAVRRAAAEGLRELVEVLPPAP 687 (897)
T ss_pred hHHHHHHHhcC-CCHHHHHHHHHHHhhhc------------chhHHHHHHHHHc-CCCHHHHHHHHHHHHHHHhccCchH
Confidence 46778888887 69999999999887753 1357899999995 5578999999999988866443210
Q ss_pred --------------HHHh--------ccHHHHHHHhhcCCChhHHHHHHHHHHHh
Q psy1198 205 --------------AVVL--------DAVPTFLEKLQVIQCMDVAEQSLTALEML 237 (249)
Q Consensus 205 --------------~~VV--------GAVPiL~~kLLsi~yiDVAEQALwALenI 237 (249)
..++ +.++.|++ ++..++.+|+..++++|..|
T Consensus 688 ~L~~~L~~~d~~VR~~A~~aL~~~~~~~~~~l~~-~L~D~d~~VR~~Av~aL~~~ 741 (897)
T PRK13800 688 ALRDHLGSPDPVVRAAALDVLRALRAGDAALFAA-ALGDPDHRVRIEAVRALVSV 741 (897)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHhhccCCHHHHHH-HhcCCCHHHHHHHHHHHhcc
Confidence 0111 12344554 55666777777777777776
No 34
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=95.74 E-value=0.017 Score=48.05 Aligned_cols=108 Identities=17% Similarity=0.150 Sum_probs=73.6
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCC--------CCCccHHHHHHHHHHHH
Q psy1198 125 KAQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSM--------DHNFDMMNNACRALTYM 196 (249)
Q Consensus 125 rl~~Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~--------e~n~dLQ~eAArALTNI 196 (249)
..+.++..|++. .... +-|.+|+..|...+-.-+..|...+=+..|+++|.. +++.+++.++.+||-.|
T Consensus 67 ~p~~~i~~L~~~-~~~~--~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal 143 (187)
T PF06371_consen 67 SPEWYIKKLKSR-PSTS--KILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKAL 143 (187)
T ss_dssp HHHHHHHHHTTT---HH--HHHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHcc-CccH--HHHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHH
Confidence 445567777763 2222 567788877766433335567666667777777752 35678999999999999
Q ss_pred HhcCchhHHHHh---ccHHHHHHHhhcCCChhHHHHHHHHHHHh
Q psy1198 197 MEALPRSSAVVL---DAVPTFLEKLQVIQCMDVAEQSLTALEML 237 (249)
Q Consensus 197 asgtp~qT~~VV---GAVPiL~~kLLsi~yiDVAEQALwALenI 237 (249)
+.-... ...|+ +.|+.|+. .+.++++.+..+++..|--|
T Consensus 144 ~n~~~G-~~~v~~~~~~v~~i~~-~L~s~~~~~r~~~leiL~~l 185 (187)
T PF06371_consen 144 MNTKYG-LEAVLSHPDSVNLIAL-SLDSPNIKTRKLALEILAAL 185 (187)
T ss_dssp TSSHHH-HHHHHCSSSHHHHHHH-T--TTSHHHHHHHHHHHHHH
T ss_pred HccHHH-HHHHHcCcHHHHHHHH-HHCCCCHHHHHHHHHHHHHH
Confidence 985433 34444 99999996 67789999999999988765
No 35
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=95.60 E-value=0.043 Score=46.49 Aligned_cols=114 Identities=18% Similarity=0.209 Sum_probs=81.5
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHh---cCchhHH
Q psy1198 129 LLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHNFDMMNNACRALTYMME---ALPRSSA 205 (249)
Q Consensus 129 Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIas---gtp~qT~ 205 (249)
|..-|++ .+++....++.-+.-.......+.+..- ...++..|+++|+.++.+.+...|+.+|+.|++ +.|+-++
T Consensus 30 i~~LL~s-~~~~~rw~G~~Ll~~~~~~~~~e~l~~~-~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p~l~R 107 (165)
T PF08167_consen 30 INSLLQS-KSAYSRWAGLCLLKVTVEQCSWEILLSH-GSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKPTLTR 107 (165)
T ss_pred HHHHhCC-CChhhHHHHHHHHHHHHHHhhHHHHHHH-HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCchHH
Confidence 4444577 4777777777666555544322221111 246899999999998889999999999999986 4555577
Q ss_pred HHh-ccHHHHHHHhhcCCC-hhHHHHHHHHHHHhhhhchhH
Q psy1198 206 VVL-DAVPTFLEKLQVIQC-MDVAEQSLTALEMLSRRHSKA 244 (249)
Q Consensus 206 ~VV-GAVPiL~~kLLsi~y-iDVAEQALwALenISgD~p~a 244 (249)
.++ .-+|.|++-|+.... .++.|.++.+|..+-..+|..
T Consensus 108 ei~tp~l~~~i~~ll~l~~~~~~~~~~l~~L~~ll~~~ptt 148 (165)
T PF08167_consen 108 EIATPNLPKFIQSLLQLLQDSSCPETALDALATLLPHHPTT 148 (165)
T ss_pred HHhhccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHCCcc
Confidence 776 778888777776543 688999999999998888764
No 36
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=95.33 E-value=0.027 Score=35.26 Aligned_cols=28 Identities=18% Similarity=0.293 Sum_probs=24.6
Q ss_pred HHHHHHHhhcCCChhHHHHHHHHHHHhhh
Q psy1198 211 VPTFLEKLQVIQCMDVAEQSLTALEMLSR 239 (249)
Q Consensus 211 VPiL~~kLLsi~yiDVAEQALwALenISg 239 (249)
+|.|++ +++-++.+|++.|+++|++|+.
T Consensus 2 lp~l~~-~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 2 LPILLQ-LLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHH-HHT-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-HcCCCCHHHHHHHHHHHHHHHh
Confidence 799996 7788999999999999999976
No 37
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=95.05 E-value=0.069 Score=44.33 Aligned_cols=71 Identities=20% Similarity=0.285 Sum_probs=57.6
Q ss_pred ChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchhHHHHh--ccHHHHHHHhhcCCChhHHHHHHHHHHHhhh
Q psy1198 168 QVVPALITLLSMDHNFDMMNNACRALTYMMEALPRSSAVVL--DAVPTFLEKLQVIQCMDVAEQSLTALEMLSR 239 (249)
Q Consensus 168 glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~qT~~VV--GAVPiL~~kLLsi~yiDVAEQALwALenISg 239 (249)
.++..|+++|+..+++...-.||-=|..++.-.|+--..+- |+=..+.+ |++.++.||+.|||.|+.+|-.
T Consensus 43 ~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~-Lm~h~d~eVr~eAL~avQklm~ 115 (119)
T PF11698_consen 43 ELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVME-LMNHEDPEVRYEALLAVQKLMV 115 (119)
T ss_dssp HHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHH-HTS-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHH-HhcCCCHHHHHHHHHHHHHHHH
Confidence 68999999997767788888999999999999998655444 77777775 8888999999999999998743
No 38
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=94.99 E-value=0.039 Score=34.55 Aligned_cols=30 Identities=23% Similarity=0.348 Sum_probs=26.3
Q ss_pred hHHHHHHhcCCCCCccHHHHHHHHHHHHHhc
Q psy1198 169 VVPALITLLSMDHNFDMMNNACRALTYMMEA 199 (249)
Q Consensus 169 lVP~LV~iLs~e~n~dLQ~eAArALTNIasg 199 (249)
++|.|+++|++ +++++...|++||.+|++.
T Consensus 1 llp~l~~~l~D-~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLLND-PSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHHT--SSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCC-CCHHHHHHHHHHHHHHHhh
Confidence 58999999985 5799999999999999875
No 39
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=94.88 E-value=0.13 Score=40.56 Aligned_cols=90 Identities=12% Similarity=0.201 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchhHHHHh-ccHHHHHHHhhc
Q psy1198 142 QLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEALPRSSAVVL-DAVPTFLEKLQV 220 (249)
Q Consensus 142 QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~qT~~VV-GAVPiL~~kLLs 220 (249)
-|.+|...+.-|... +... .+.++|.++.++.. ++..+.+-||-+|+||+.......-.-. ...+.|++ |..
T Consensus 6 gli~Laa~ai~l~~~----~~~~-l~~Il~pVL~~~~D-~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~k-l~~ 78 (97)
T PF12755_consen 6 GLIGLAAVAIALGKD----ISKY-LDEILPPVLKCFDD-QDSRVRYYACEALYNISKVARGEILPYFNEIFDALCK-LSA 78 (97)
T ss_pred HHHHHHHHHHHchHh----HHHH-HHHHHHHHHHHcCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHc
Confidence 355555555544332 2222 24689999999975 5699999999999999998876543333 78888885 776
Q ss_pred CCChhHHHHHHHHHHHhhh
Q psy1198 221 IQCMDVAEQSLTALEMLSR 239 (249)
Q Consensus 221 i~yiDVAEQALwALenISg 239 (249)
-++.+|..-| +.|.++=+
T Consensus 79 D~d~~Vr~~a-~~Ld~llk 96 (97)
T PF12755_consen 79 DPDENVRSAA-ELLDRLLK 96 (97)
T ss_pred CCchhHHHHH-HHHHHHhc
Confidence 6677766544 77766543
No 40
>PF05536 Neurochondrin: Neurochondrin
Probab=94.75 E-value=0.11 Score=52.17 Aligned_cols=75 Identities=23% Similarity=0.309 Sum_probs=62.6
Q ss_pred cChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchhHHHHh--ccHHHHHHHhhcCCChhHHHHHHHHHHHhhhhchhH
Q psy1198 167 KQVVPALITLLSMDHNFDMMNNACRALTYMMEALPRSSAVVL--DAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRHSKA 244 (249)
Q Consensus 167 ~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~qT~~VV--GAVPiL~~kLLsi~yiDVAEQALwALenISgD~p~a 244 (249)
-.-||.|+++|.......+.-+|.-||+.|+ .+|+--.+++ |+||.||+-+.+ ..-..|+++..|.++..+....
T Consensus 97 ~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ia-s~~~G~~aLl~~g~v~~L~ei~~~--~~~~~E~Al~lL~~Lls~~~~~ 173 (543)
T PF05536_consen 97 VSRIPLLLEILSSSSDLETVDDALQCLLAIA-SSPEGAKALLESGAVPALCEIIPN--QSFQMEIALNLLLNLLSRLGQK 173 (543)
T ss_pred HHHHHHHHHHHHcCCchhHHHHHHHHHHHHH-cCcHhHHHHHhcCCHHHHHHHHHh--CcchHHHHHHHHHHHHHhcchh
Confidence 4789999999987766689999999999999 7777777777 999999996665 5567899999999987776643
No 41
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=94.41 E-value=0.033 Score=52.84 Aligned_cols=99 Identities=18% Similarity=0.242 Sum_probs=70.6
Q ss_pred CCHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchhHHHHh-ccHHHHH
Q psy1198 137 GDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEALPRSSAVVL-DAVPTFL 215 (249)
Q Consensus 137 ~D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~qT~~VV-GAVPiL~ 215 (249)
.+|-.|...++-|+++.....+.. ....+++.+..+|+ ..++.+.++|++++.++..-.+ ++ .+++.|+
T Consensus 204 ~~~~~q~~il~~l~~~~~~~~~~~----~~~~~i~~l~~~l~-s~~~~V~~e~~~~i~~l~~~~~-----~~~~~~~~L~ 273 (526)
T PF01602_consen 204 PDPWLQIKILRLLRRYAPMEPEDA----DKNRIIEPLLNLLQ-SSSPSVVYEAIRLIIKLSPSPE-----LLQKAINPLI 273 (526)
T ss_dssp CSHHHHHHHHHHHTTSTSSSHHHH----HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHSSSHH-----HHHHHHHHHH
T ss_pred cchHHHHHHHHHHHhcccCChhhh----hHHHHHHHHHHHhh-ccccHHHHHHHHHHHHhhcchH-----HHHhhHHHHH
Confidence 577777666666654332211100 00357888888887 4578999999999998776333 44 8899999
Q ss_pred HHhhcCCChhHHHHHHHHHHHhhhhchhHHh
Q psy1198 216 EKLQVIQCMDVAEQSLTALEMLSRRHSKAIL 246 (249)
Q Consensus 216 ~kLLsi~yiDVAEQALwALenISgD~p~aIL 246 (249)
. |+..++.++.--+|++|..|+...+..+.
T Consensus 274 ~-lL~s~~~nvr~~~L~~L~~l~~~~~~~v~ 303 (526)
T PF01602_consen 274 K-LLSSSDPNVRYIALDSLSQLAQSNPPAVF 303 (526)
T ss_dssp H-HHTSSSHHHHHHHHHHHHHHCCHCHHHHG
T ss_pred H-HhhcccchhehhHHHHHHHhhcccchhhh
Confidence 5 77788899999999999999998866553
No 42
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=94.19 E-value=0.28 Score=46.59 Aligned_cols=104 Identities=13% Similarity=0.087 Sum_probs=58.7
Q ss_pred HHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchhHHHHh-c
Q psy1198 131 VSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEALPRSSAVVL-D 209 (249)
Q Consensus 131 ~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~qT~~VV-G 209 (249)
..+.+ +++..+-.|+..+.++.... |. .++.. ++|.+.++|. +.++.++..|+.+|..| .-.|+.-..++ .
T Consensus 121 ~ll~~-~~~~VRk~A~~~l~~i~~~~--p~--~~~~~-~~~~l~~lL~-d~~~~V~~~a~~~l~~i-~~~~~~~~~~~~~ 192 (526)
T PF01602_consen 121 KLLSD-PSPYVRKKAALALLKIYRKD--PD--LVEDE-LIPKLKQLLS-DKDPSVVSAALSLLSEI-KCNDDSYKSLIPK 192 (526)
T ss_dssp HHHHS-SSHHHHHHHHHHHHHHHHHC--HC--CHHGG-HHHHHHHHTT-HSSHHHHHHHHHHHHHH-HCTHHHHTTHHHH
T ss_pred HHhcC-CchHHHHHHHHHHHHHhccC--HH--HHHHH-HHHHHhhhcc-CCcchhHHHHHHHHHHH-ccCcchhhhhHHH
Confidence 34454 46666666666666666552 11 13333 6777777774 44577777777777777 32333222222 4
Q ss_pred cHHHHHHHhhcCCChhHHHHHHHHHHHhhhhchh
Q psy1198 210 AVPTFLEKLQVIQCMDVAEQSLTALEMLSRRHSK 243 (249)
Q Consensus 210 AVPiL~~kLLsi~yiDVAEQALwALenISgD~p~ 243 (249)
.++.|++ ++.....-+.-.+++.|.++....+.
T Consensus 193 ~~~~L~~-~l~~~~~~~q~~il~~l~~~~~~~~~ 225 (526)
T PF01602_consen 193 LIRILCQ-LLSDPDPWLQIKILRLLRRYAPMEPE 225 (526)
T ss_dssp HHHHHHH-HHTCCSHHHHHHHHHHHTTSTSSSHH
T ss_pred HHHHhhh-cccccchHHHHHHHHHHHhcccCChh
Confidence 4555553 33556666677777777776664443
No 43
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=93.54 E-value=0.061 Score=36.82 Aligned_cols=30 Identities=30% Similarity=0.398 Sum_probs=25.2
Q ss_pred ccChHHHHHHhcCCCCCccHHHHHHHHHHHH
Q psy1198 166 VKQVVPALITLLSMDHNFDMMNNACRALTYM 196 (249)
Q Consensus 166 ~~glVP~LV~iLs~e~n~dLQ~eAArALTNI 196 (249)
...++|.|+.+|++ +++++...|||||.||
T Consensus 26 ~~~~~~~L~~~L~d-~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 26 LPELLPALIPLLQD-DDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHTTS-SSHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHcC-CCHHHHHHHHHHHhcC
Confidence 34789999999965 4569999999999886
No 44
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=92.87 E-value=0.57 Score=49.36 Aligned_cols=59 Identities=27% Similarity=0.223 Sum_probs=35.5
Q ss_pred cChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchhHHHHhccHHHHHHHhhcCCChhHHHHHHHHHH
Q psy1198 167 KQVVPALITLLSMDHNFDMMNNACRALTYMMEALPRSSAVVLDAVPTFLEKLQVIQCMDVAEQSLTALE 235 (249)
Q Consensus 167 ~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~qT~~VVGAVPiL~~kLLsi~yiDVAEQALwALe 235 (249)
...++.|+.+|+. .++++..+|+|+|..+ .+.| .+++.|.+ +++-++.+|+..+.++|+
T Consensus 837 ~~a~~~L~~~L~D-~~~~VR~~A~~aL~~~-~~~~-------~a~~~L~~-al~D~d~~Vr~~A~~aL~ 895 (897)
T PRK13800 837 DVAVPALVEALTD-PHLDVRKAAVLALTRW-PGDP-------AARDALTT-ALTDSDADVRAYARRALA 895 (897)
T ss_pred cchHHHHHHHhcC-CCHHHHHHHHHHHhcc-CCCH-------HHHHHHHH-HHhCCCHHHHHHHHHHHh
Confidence 4556666666653 3467777777777665 1222 23555553 555567777777777775
No 45
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=92.78 E-value=0.78 Score=42.88 Aligned_cols=118 Identities=17% Similarity=0.171 Sum_probs=81.3
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCC---ccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcC
Q psy1198 124 TKAQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFP---VKQVVPALITLLSMDHNFDMMNNACRALTYMMEAL 200 (249)
Q Consensus 124 ~rl~~Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp---~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgt 200 (249)
.++++.|+.+... .......+|..++++|... . +..|. ...++..|.++|++... +=|..|+++|.-++=-+
T Consensus 43 ~~L~~~Id~l~eK-~~~~Re~aL~~l~~~l~~~--~-~~d~v~~~~~tL~~~~~k~lkkg~~-~E~~lA~~~l~Ll~ltl 117 (309)
T PF05004_consen 43 DKLKEAIDLLTEK-SSSTREAALEALIRALSSR--Y-LPDFVEDRRETLLDALLKSLKKGKS-EEQALAARALALLALTL 117 (309)
T ss_pred HHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHhc--c-cHHHHHHHHHHHHHHHHHHhccCCH-HHHHHHHHHHHHHhhhc
Confidence 4577888888764 5667788999999999663 1 11222 23678888999987654 66788989877665432
Q ss_pred --chhHHHHh-ccHHHHHHHhhcC-CChhHHHHHHHHHHHh---hhhchhHHh
Q psy1198 201 --PRSSAVVL-DAVPTFLEKLQVI-QCMDVAEQSLTALEML---SRRHSKAIL 246 (249)
Q Consensus 201 --p~qT~~VV-GAVPiL~~kLLsi-~yiDVAEQALwALenI---SgD~p~aIL 246 (249)
......|. ...|+|.+-+... ..+.++..|+.||+.+ ..+.+.++.
T Consensus 118 g~g~~~~ei~~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~ 170 (309)
T PF05004_consen 118 GAGEDSEEIFEELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETE 170 (309)
T ss_pred CCCccHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHH
Confidence 35566666 8899999866653 3567878899999875 444444443
No 46
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=92.68 E-value=0.29 Score=44.88 Aligned_cols=119 Identities=20% Similarity=0.161 Sum_probs=79.6
Q ss_pred HHHHHHHHHHhcC---CCHHHHHHHHHHHHHHhhcCCCCCCC-CCCccChHHHHHHhc------CCCCCccHHHHHHHHH
Q psy1198 124 TKAQQLLVSLQAI---GDEDQQLQAVVEMCQMLVMGNEDTLT-GFPVKQVVPALITLL------SMDHNFDMMNNACRAL 193 (249)
Q Consensus 124 ~rl~~Ll~~L~S~---~D~~~QLeAL~eLrelLSmsnep~I~-~fp~~glVP~LV~iL------s~e~n~dLQ~eAArAL 193 (249)
.-++.+++.|++. +|...|..+++.|..+|... ..- .|-..+.|+.|+++| ++..++++|++++=||
T Consensus 146 ~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~---~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~l 222 (312)
T PF03224_consen 146 EALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSK---EYRQVFWKSNGVSPLFDILRKQATNSNSSGIQLQYQALLCL 222 (312)
T ss_dssp HHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSH---HHHHHHHTHHHHHHHHHHHH---------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcc---hhHHHHHhcCcHHHHHHHHHhhcccCCCCchhHHHHHHHHH
Confidence 3456666666541 13334567788888887442 111 244578999999999 5566899999988776
Q ss_pred HHHHhcCchhHHHHh--ccHHHHHHHhhcCCChhHHHHHHHHHHHhhhhchhHHh
Q psy1198 194 TYMMEALPRSSAVVL--DAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRHSKAIL 246 (249)
Q Consensus 194 TNIasgtp~qT~~VV--GAVPiL~~kLLsi~yiDVAEQALwALenISgD~p~aIL 246 (249)
- +++-.++....++ +.||.|++-+..+.-..|.-=|+.+|-|+....++.++
T Consensus 223 W-lLSF~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~ 276 (312)
T PF03224_consen 223 W-LLSFEPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNI 276 (312)
T ss_dssp H-HHTTSHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHH
T ss_pred H-HHhcCHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHH
Confidence 5 3455666777776 99999999888888899999999999999887775443
No 47
>KOG1059|consensus
Probab=92.68 E-value=0.59 Score=49.33 Aligned_cols=116 Identities=16% Similarity=0.204 Sum_probs=81.0
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCC------------------------
Q psy1198 124 TKAQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSM------------------------ 179 (249)
Q Consensus 124 ~rl~~Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~------------------------ 179 (249)
--|+++++.|.+ +||..|=.|+.=+||+--....+- + .+.|.|.++|..
T Consensus 181 ~~FprL~EkLeD-pDp~V~SAAV~VICELArKnPkny---L---~LAP~ffkllttSsNNWmLIKiiKLF~aLtplEPRL 253 (877)
T KOG1059|consen 181 PCFPRLVEKLED-PDPSVVSAAVSVICELARKNPQNY---L---QLAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRL 253 (877)
T ss_pred hhHHHHHHhccC-CCchHHHHHHHHHHHHHhhCCccc---c---cccHHHHHHHhccCCCeehHHHHHHHhhccccCchh
Confidence 456889999987 699999999999999764422111 1 355555555532
Q ss_pred --------------CCCccHHHHHHHHHH--HHHhcCchhHHHHhccHHHHHHHhhcCCChhHHHHHHHHHHHhhhhchh
Q psy1198 180 --------------DHNFDMMNNACRALT--YMMEALPRSSAVVLDAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRHSK 243 (249)
Q Consensus 180 --------------e~n~dLQ~eAArALT--NIasgtp~qT~~VVGAVPiL~~kLLsi~yiDVAEQALwALenISgD~p~ 243 (249)
....-|-||+.+++- ||.+|.|+++..+-=.|..|-- |.+.++.+|.=-.|-|+.+|..-||+
T Consensus 254 gKKLieplt~li~sT~AmSLlYECvNTVVa~s~s~g~~d~~asiqLCvqKLr~-fiedsDqNLKYlgLlam~KI~ktHp~ 332 (877)
T KOG1059|consen 254 GKKLIEPITELMESTVAMSLLYECVNTVVAVSMSSGMSDHSASIQLCVQKLRI-FIEDSDQNLKYLGLLAMSKILKTHPK 332 (877)
T ss_pred hhhhhhHHHHHHHhhHHHHHHHHHHHHheeehhccCCCCcHHHHHHHHHHHhh-hhhcCCccHHHHHHHHHHHHhhhCHH
Confidence 223456667666653 6777777777765545555543 55667888999999999999999999
Q ss_pred HHhh
Q psy1198 244 AILQ 247 (249)
Q Consensus 244 aIL~ 247 (249)
+|.+
T Consensus 333 ~Vqa 336 (877)
T KOG1059|consen 333 AVQA 336 (877)
T ss_pred HHHH
Confidence 9754
No 48
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=92.65 E-value=0.97 Score=38.32 Aligned_cols=99 Identities=12% Similarity=0.135 Sum_probs=71.4
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchhHHHHhccH-HHHHHH
Q psy1198 139 EDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEALPRSSAVVLDAV-PTFLEK 217 (249)
Q Consensus 139 ~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~qT~~VVGAV-PiL~~k 217 (249)
|...-.++.-++++.-+- |+ + .+.++|.+..+|..+ +|.+...|..+|+++...-.--.. |-+ ..++.
T Consensus 2 ~~vR~n~i~~l~DL~~r~--~~---~-ve~~~~~l~~~L~D~-~~~VR~~al~~Ls~Li~~d~ik~k---~~l~~~~l~- 70 (178)
T PF12717_consen 2 PSVRNNAIIALGDLCIRY--PN---L-VEPYLPNLYKCLRDE-DPLVRKTALLVLSHLILEDMIKVK---GQLFSRILK- 70 (178)
T ss_pred HHHHHHHHHHHHHHHHhC--cH---H-HHhHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHcCceeeh---hhhhHHHHH-
Confidence 444455666677766552 33 2 478999999999854 699999999999999864221111 444 77775
Q ss_pred hhcCCChhHHHHHHHHHHHhhhh-chhHHhhc
Q psy1198 218 LQVIQCMDVAEQSLTALEMLSRR-HSKAILQA 248 (249)
Q Consensus 218 LLsi~yiDVAEQALwALenISgD-~p~aIL~a 248 (249)
++.-++.+|++.|..+|..++.. .|..+...
T Consensus 71 ~l~D~~~~Ir~~A~~~~~e~~~~~~~~~i~~~ 102 (178)
T PF12717_consen 71 LLVDENPEIRSLARSFFSELLKKRNPNIIYNN 102 (178)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHhccchHHHHH
Confidence 55557899999999999999998 77766543
No 49
>KOG1967|consensus
Probab=92.56 E-value=0.52 Score=50.67 Aligned_cols=117 Identities=22% Similarity=0.279 Sum_probs=80.2
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCC-CCCCCCCCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchhH
Q psy1198 126 AQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGN-EDTLTGFPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEALPRSS 204 (249)
Q Consensus 126 l~~Ll~~L~S~~D~~~QLeAL~eLrelLSmsn-ep~I~~fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~qT 204 (249)
++.+++++.+ .+....-.=+..|.-+|..-. +-.++.|| .+.|.|++.|+.++ +++|..+-++|--...-.+.-+
T Consensus 869 vP~l~~~~~t-~~~~~K~~yl~~LshVl~~vP~~vllp~~~--~LlPLLLq~Ls~~D-~~v~vstl~~i~~~l~~~~tL~ 944 (1030)
T KOG1967|consen 869 VPILVSKFET-APGSQKHNYLEALSHVLTNVPKQVLLPQFP--MLLPLLLQALSMPD-VIVRVSTLRTIPMLLTESETLQ 944 (1030)
T ss_pred HHHHHHHhcc-CCccchhHHHHHHHHHHhcCCHHhhccchh--hHHHHHHHhcCCCc-cchhhhHhhhhhHHHHhccccc
Confidence 3666677764 244443344555566665321 12222344 79999999999875 8999999999988777666554
Q ss_pred HHHh-ccHHHHHHHhhcCCC---hhHHHHHHHHHHHhhhhchhHHhh
Q psy1198 205 AVVL-DAVPTFLEKLQVIQC---MDVAEQSLTALEMLSRRHSKAILQ 247 (249)
Q Consensus 205 ~~VV-GAVPiL~~kLLsi~y---iDVAEQALwALenISgD~p~aIL~ 247 (249)
..=+ -.||.|+. |-...+ +-|+|-||+||+.|.+.-|...|.
T Consensus 945 t~~~~Tlvp~lLs-ls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~ 990 (1030)
T KOG1967|consen 945 TEHLSTLVPYLLS-LSSDNDNNMMVVREDALQCLNALTRRLPTKSLL 990 (1030)
T ss_pred hHHHhHHHHHHHh-cCCCCCcchhHHHHHHHHHHHHHhccCCCcccc
Confidence 4445 78999997 655443 779999999999999977765443
No 50
>KOG1241|consensus
Probab=92.19 E-value=0.52 Score=49.80 Aligned_cols=109 Identities=23% Similarity=0.185 Sum_probs=77.0
Q ss_pred HHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchhHHHHh--
Q psy1198 131 VSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEALPRSSAVVL-- 208 (249)
Q Consensus 131 ~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~qT~~VV-- 208 (249)
++|++ +|-...=.+...+--+|-- .++.-..-.+.+.+|.+++++. +.+..+---++|+|+-|+|..|+...-.+
T Consensus 371 e~i~~-pdwr~reaavmAFGSIl~g-p~~~~Lt~iV~qalp~ii~lm~-D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l 447 (859)
T KOG1241|consen 371 ENIQN-PDWRNREAAVMAFGSILEG-PEPDKLTPIVIQALPSIINLMS-DPSLWVKDTAAWTLGRIADFLPEAIINQELL 447 (859)
T ss_pred HhcCC-cchhhhhHHHHHHHhhhcC-CchhhhhHHHhhhhHHHHHHhc-CchhhhcchHHHHHHHHHhhchhhcccHhhh
Confidence 46776 3544444455555444422 1211112335688999999998 54555567899999999999998876666
Q ss_pred -ccHHHHHHHhhcCCChhHHHHHHHHHHHhhhhchhH
Q psy1198 209 -DAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRHSKA 244 (249)
Q Consensus 209 -GAVPiL~~kLLsi~yiDVAEQALwALenISgD~p~a 244 (249)
.-|++|++-|.+ .+.|++-|-||+.+++.-.+++
T Consensus 448 ~~~l~~l~~gL~D--ePrva~N~CWAf~~Laea~~eA 482 (859)
T KOG1241|consen 448 QSKLSALLEGLND--EPRVASNVCWAFISLAEAAYEA 482 (859)
T ss_pred hHHHHHHHHHhhh--CchHHHHHHHHHHHHHHHHHHh
Confidence 888999987764 6889999999999998655554
No 51
>KOG1048|consensus
Probab=91.99 E-value=0.42 Score=50.00 Aligned_cols=71 Identities=20% Similarity=0.203 Sum_probs=60.4
Q ss_pred ChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchhHHHHh--ccHHHHHHHhhcCCChhHHHHHHHHHHHhhhh
Q psy1198 168 QVVPALITLLSMDHNFDMMNNACRALTYMMEALPRSSAVVL--DAVPTFLEKLQVIQCMDVAEQSLTALEMLSRR 240 (249)
Q Consensus 168 glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~qT~~VV--GAVPiL~~kLLsi~yiDVAEQALwALenISgD 240 (249)
-=+|+.|+.|.. .++.+|-.||--|-+++=+-.+--..|= |.||.||. |+.....+|--|+.|||.|+.=+
T Consensus 233 ~~lpe~i~mL~~-q~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~-Ll~~~~~evq~~acgaLRNLvf~ 305 (717)
T KOG1048|consen 233 PTLPEVISMLMS-QDPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVA-LLDHRNDEVQRQACGALRNLVFG 305 (717)
T ss_pred cccHHHHHHHhc-cChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHH-HhcCCcHHHHHHHHHHHHhhhcc
Confidence 458899999974 5699999999999999988776655444 99999997 88889999999999999998744
No 52
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=91.76 E-value=0.85 Score=41.84 Aligned_cols=110 Identities=22% Similarity=0.266 Sum_probs=70.2
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCCC---CCccHHHHHHHHHHHHHhcCc
Q psy1198 125 KAQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMD---HNFDMMNNACRALTYMMEALP 201 (249)
Q Consensus 125 rl~~Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~e---~n~dLQ~eAArALTNIasgtp 201 (249)
-+..++.-+.. +|...++.|..-|..+++..+... ......+++.|+++|+.. ++.++|..|.+||-+++. .+
T Consensus 106 ~~~~fl~ll~~-~D~~i~~~a~~iLt~Ll~~~~~~~--~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~-~~ 181 (312)
T PF03224_consen 106 PYSPFLKLLDR-NDSFIQLKAAFILTSLLSQGPKRS--EKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLR-SK 181 (312)
T ss_dssp -HHHHHHH-S--SSHHHHHHHHHHHHHHHTSTTT----HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHT-SH
T ss_pred hHHHHHHHhcC-CCHHHHHHHHHHHHHHHHcCCccc--cchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhC-cc
Confidence 46677775666 599999999999999998854322 111247899999998863 346789999999999995 44
Q ss_pred hhHHHHh--ccHHHHHHHh------hcCCChhHHHHHHHHHHHhh
Q psy1198 202 RSSAVVL--DAVPTFLEKL------QVIQCMDVAEQSLTALEMLS 238 (249)
Q Consensus 202 ~qT~~VV--GAVPiL~~kL------Lsi~yiDVAEQALwALenIS 238 (249)
+.-..++ +.|+.|.+.| -....+.+.-|++-||=.+|
T Consensus 182 ~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlLS 226 (312)
T PF03224_consen 182 EYRQVFWKSNGVSPLFDILRKQATNSNSSGIQLQYQALLCLWLLS 226 (312)
T ss_dssp HHHHHHHTHHHHHHHHHHHH---------HHHHHHHHHHHHHHHT
T ss_pred hhHHHHHhcCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHh
Confidence 4444454 9999999855 23445666666655554444
No 53
>KOG4199|consensus
Probab=91.68 E-value=1.2 Score=43.78 Aligned_cols=117 Identities=13% Similarity=0.147 Sum_probs=82.1
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhhc-CCCCCCC-CCCccChHHHHHHhcCC-CCCccHHHHHHHHHHHHHhcCch
Q psy1198 126 AQQLLVSLQAIGDEDQQLQAVVEMCQMLVM-GNEDTLT-GFPVKQVVPALITLLSM-DHNFDMMNNACRALTYMMEALPR 202 (249)
Q Consensus 126 l~~Ll~~L~S~~D~~~QLeAL~eLrelLSm-snep~I~-~fp~~glVP~LV~iLs~-e~n~dLQ~eAArALTNIasgtp~ 202 (249)
+..++.-|.+. .+...-+...+++.+|+. ..+|... .+-..+..|.++.++.. .++|.+--+++-||+.|+=-.|+
T Consensus 285 l~tl~~~i~d~-n~~~~r~l~k~~lslLralAG~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~a~i~~l~LR~pd 363 (461)
T KOG4199|consen 285 LDTLLRCIDDS-NEQGNRTLAKTCLSLLRALAGSDSVKSTIVEKGGLDKIITLALRHSDDPLVIQEVMAIISILCLRSPD 363 (461)
T ss_pred HHHHHHHHhhh-chhhHHHHHHHHHHHHHHHhCCCchHHHHHHhcChHHHHHHHHHcCCChHHHHHHHHHHHHHHhcCcc
Confidence 45566566542 222222455666666665 3344433 35567889999987754 46899999999999999999999
Q ss_pred hHHHHh--ccHHHHHHHhhcCC-ChhHHHHHHHHHHHhhhhchh
Q psy1198 203 SSAVVL--DAVPTFLEKLQVIQ-CMDVAEQSLTALEMLSRRHSK 243 (249)
Q Consensus 203 qT~~VV--GAVPiL~~kLLsi~-yiDVAEQALwALenISgD~p~ 243 (249)
+...+| |+-...++-+..-| .--|.-|+.|.+.||.-++..
T Consensus 364 hsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~~ 407 (461)
T KOG4199|consen 364 HSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSAE 407 (461)
T ss_pred hHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhhh
Confidence 999999 66556666566554 467889999999999876543
No 54
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=91.39 E-value=1.1 Score=40.50 Aligned_cols=95 Identities=28% Similarity=0.327 Sum_probs=70.2
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchh
Q psy1198 124 TKAQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEALPRS 203 (249)
Q Consensus 124 ~rl~~Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~q 203 (249)
..++.+++.+.+ .|+...+.+...+.+ +.....||.|.++|..+ ++.+...|+.+|-++-+ |
T Consensus 43 ~~~~~~~~~l~~-~~~~vr~~aa~~l~~------------~~~~~av~~l~~~l~d~-~~~vr~~a~~aLg~~~~--~-- 104 (335)
T COG1413 43 EAADELLKLLED-EDLLVRLSAAVALGE------------LGSEEAVPLLRELLSDE-DPRVRDAAADALGELGD--P-- 104 (335)
T ss_pred hhHHHHHHHHcC-CCHHHHHHHHHHHhh------------hchHHHHHHHHHHhcCC-CHHHHHHHHHHHHccCC--h--
Confidence 356777777887 478888877776333 44457899999999854 57888888887666543 2
Q ss_pred HHHHhccHHHHHHHhhcCCChhHHHHHHHHHHHhhhhc
Q psy1198 204 SAVVLDAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRH 241 (249)
Q Consensus 204 T~~VVGAVPiL~~kLLsi~yiDVAEQALwALenISgD~ 241 (249)
-++|.|+..|.+.+...|++-|.|+|++|--..
T Consensus 105 -----~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~~ 137 (335)
T COG1413 105 -----EAVPPLVELLENDENEGVRAAAARALGKLGDER 137 (335)
T ss_pred -----hHHHHHHHHHHcCCcHhHHHHHHHHHHhcCchh
Confidence 467889975554688999999999999976544
No 55
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=91.01 E-value=3.9 Score=35.00 Aligned_cols=75 Identities=13% Similarity=0.119 Sum_probs=46.8
Q ss_pred ChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCch---hH--HHHh-ccHHHHHHHhhcCCChhHHHHHHHHHHHhhhhc
Q psy1198 168 QVVPALITLLSMDHNFDMMNNACRALTYMMEALPR---SS--AVVL-DAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRH 241 (249)
Q Consensus 168 glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~---qT--~~VV-GAVPiL~~kLLsi~yiDVAEQALwALenISgD~ 241 (249)
.++..++.....+.||.+...++.+|++++...+. .. ...+ ..+|.++. +++-...+|++.|-.++..+..-.
T Consensus 130 ~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~~l~~-~l~D~~~~VR~~Ar~~~~~l~~~~ 208 (228)
T PF12348_consen 130 KILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQKSAFLKQLVKALVK-LLSDADPEVREAARECLWALYSHF 208 (228)
T ss_dssp HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--HHHHHHHHHHHHH-HHTSS-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhcccchHHHHHHHHHH-HCCCCCHHHHHHHHHHHHHHHHHC
Confidence 45344444444567899999999999999999992 21 1123 57777774 777788999988777776665544
Q ss_pred hh
Q psy1198 242 SK 243 (249)
Q Consensus 242 p~ 243 (249)
|.
T Consensus 209 ~~ 210 (228)
T PF12348_consen 209 PE 210 (228)
T ss_dssp -H
T ss_pred CH
Confidence 44
No 56
>KOG1293|consensus
Probab=90.90 E-value=2.1 Score=44.64 Aligned_cols=113 Identities=18% Similarity=0.138 Sum_probs=78.4
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchhHH
Q psy1198 126 AQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEALPRSSA 205 (249)
Q Consensus 126 l~~Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~qT~ 205 (249)
++.||+-+.. ++...+-.+|-.+|++. |+--++=..|...++|..+.+.+...+ +.+---+-|+|.|++=..-+.-.
T Consensus 421 ~~plvqll~d-p~~~i~~~~lgai~NlV-mefs~~kskfl~~ngId~l~s~~~~~~-~n~r~~~~~~Lr~l~f~~de~~k 497 (678)
T KOG1293|consen 421 AQPLVQLLMD-PEIMIMGITLGAICNLV-MEFSNLKSKFLRNNGIDILESMLTDPD-FNSRANSLWVLRHLMFNCDEEEK 497 (678)
T ss_pred HHHHHHHhhC-cchhHHHHHHHHHHHHH-hhcccHHHHHHHcCcHHHHHHHhcCCC-chHHHHHHHHHHHHHhcchHHHH
Confidence 4556655533 45566667788898865 554455456999999999999998654 67777899999999865544332
Q ss_pred HHh--ccHHHHHHHhhcCCChhHHHHHHHHHHHhhhhc
Q psy1198 206 VVL--DAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRH 241 (249)
Q Consensus 206 ~VV--GAVPiL~~kLLsi~yiDVAEQALwALenISgD~ 241 (249)
.-- ..-.-++..|.+-++..|.|||++-|.|+-=++
T Consensus 498 ~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~~ 535 (678)
T KOG1293|consen 498 FQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCNS 535 (678)
T ss_pred HHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcCc
Confidence 222 222233334667799999999999999986553
No 57
>KOG0567|consensus
Probab=90.48 E-value=0.52 Score=44.51 Aligned_cols=80 Identities=16% Similarity=0.187 Sum_probs=54.6
Q ss_pred HHHHHHhcCCCCCccHH-HHHHHHHHHH---------HhcCchh------HHHHh-------ccHHHHHHHhhcC-CChh
Q psy1198 170 VPALITLLSMDHNFDMM-NNACRALTYM---------MEALPRS------SAVVL-------DAVPTFLEKLQVI-QCMD 225 (249)
Q Consensus 170 VP~LV~iLs~e~n~dLQ-~eAArALTNI---------asgtp~q------T~~VV-------GAVPiL~~kLLsi-~yiD 225 (249)
|..|-..|..+..+.+. +.|-..|+|+ ++++... ..+.| -+||.|.+.|+.. +.+=
T Consensus 156 v~~lr~~lld~t~~l~~Ry~amF~LRn~g~EeaI~al~~~l~~~SalfrhEvAfVfGQl~s~~ai~~L~k~L~d~~E~pM 235 (289)
T KOG0567|consen 156 VHELRAELLDETKPLFERYRAMFYLRNIGTEEAINALIDGLADDSALFRHEVAFVFGQLQSPAAIPSLIKVLLDETEHPM 235 (289)
T ss_pred HHHHHHHHHhcchhHHHHHhhhhHhhccCcHHHHHHHHHhcccchHHHHHHHHHHHhhccchhhhHHHHHHHHhhhcchH
Confidence 66666666555545552 3445556665 3333322 22333 5799999888864 6788
Q ss_pred HHHHHHHHHHHhhhhchhHHhhcC
Q psy1198 226 VAEQSLTALEMLSRRHSKAILQAF 249 (249)
Q Consensus 226 VAEQALwALenISgD~p~aIL~a~ 249 (249)
|+-.|..||+-|+.+...++|+.|
T Consensus 236 VRhEaAeALGaIa~e~~~~vL~e~ 259 (289)
T KOG0567|consen 236 VRHEAAEALGAIADEDCVEVLKEY 259 (289)
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHH
Confidence 999999999999999999998754
No 58
>KOG2171|consensus
Probab=90.43 E-value=1.3 Score=48.39 Aligned_cols=113 Identities=17% Similarity=0.182 Sum_probs=84.3
Q ss_pred HHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchhHHHHh--
Q psy1198 131 VSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEALPRSSAVVL-- 208 (249)
Q Consensus 131 ~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~qT~~VV-- 208 (249)
+.|+| .|......+|..|.-+---+.+-.+..+ +.++|..+..|+.+ +|.+++-||-||--|..-++.....--
T Consensus 355 ~~l~S-~~w~~R~AaL~Als~i~EGc~~~m~~~l--~~Il~~Vl~~l~Dp-hprVr~AA~naigQ~stdl~p~iqk~~~e 430 (1075)
T KOG2171|consen 355 AMLQS-TEWKERHAALLALSVIAEGCSDVMIGNL--PKILPIVLNGLNDP-HPRVRYAALNAIGQMSTDLQPEIQKKHHE 430 (1075)
T ss_pred HHhcC-CCHHHHHHHHHHHHHHHcccHHHHHHHH--HHHHHHHHhhcCCC-CHHHHHHHHHHHHhhhhhhcHHHHHHHHH
Confidence 44677 5888888888887654322211111123 46889999999865 599999999999999988887766555
Q ss_pred ccHHHHHHHhhcCCChhHHHHHHHHHHHhhhhchhHHhh
Q psy1198 209 DAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRHSKAILQ 247 (249)
Q Consensus 209 GAVPiL~~kLLsi~yiDVAEQALwALenISgD~p~aIL~ 247 (249)
-.+|.|+..|-+-..+.|.--|..||-|.+-++++.+|.
T Consensus 431 ~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~ 469 (1075)
T KOG2171|consen 431 RLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILE 469 (1075)
T ss_pred hccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHH
Confidence 445578876666677889999999999999999999875
No 59
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=90.39 E-value=0.87 Score=35.98 Aligned_cols=60 Identities=23% Similarity=0.144 Sum_probs=51.5
Q ss_pred HHHHHHHHHhcCchhHHHHh-ccHHHHHHHhhcCCChhHHHHHHHHHHHhhhhchhHHhhcC
Q psy1198 189 ACRALTYMMEALPRSSAVVL-DAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRHSKAILQAF 249 (249)
Q Consensus 189 AArALTNIasgtp~qT~~VV-GAVPiL~~kLLsi~yiDVAEQALwALenISgD~p~aIL~a~ 249 (249)
+-++|..++-+++......+ -.||.++. .++-++..|+.-|.++|-||++....++|..|
T Consensus 6 gli~Laa~ai~l~~~~~~~l~~Il~pVL~-~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f 66 (97)
T PF12755_consen 6 GLIGLAAVAIALGKDISKYLDEILPPVLK-CFDDQDSRVRYYACEALYNISKVARGEILPYF 66 (97)
T ss_pred HHHHHHHHHHHchHhHHHHHHHHHHHHHH-HcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45788999999998877777 88999985 77778999999999999999999999888654
No 60
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=88.71 E-value=0.78 Score=38.97 Aligned_cols=78 Identities=18% Similarity=0.240 Sum_probs=59.1
Q ss_pred CCCCCCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchhHHHHh-ccHHHHHHHhhcCCChhHHHHHHHHHHHhh
Q psy1198 160 TLTGFPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEALPRSSAVVL-DAVPTFLEKLQVIQCMDVAEQSLTALEMLS 238 (249)
Q Consensus 160 ~I~~fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~qT~~VV-GAVPiL~~kLLsi~yiDVAEQALwALenIS 238 (249)
..+++-..-++..|+++|+...-...+-.+..++++|+.-....+.... -.||.|++.+.+.+. .+.|-.+|-|..|.
T Consensus 78 ~~ee~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~-~~~e~~~~qL~~lv 156 (160)
T PF11865_consen 78 SSEEYYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPD-SLREFYFQQLADLV 156 (160)
T ss_pred chHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCH-HHHHHHHHHHHHHH
Confidence 4445445678899999998766566666889999999965444443333 889999997776666 99999999998874
No 61
>KOG0168|consensus
Probab=88.58 E-value=3.2 Score=44.75 Aligned_cols=109 Identities=17% Similarity=0.168 Sum_probs=72.2
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHH---HHHHhhcCCCCCCCCCCccChHHHHHHhcC-------------------CCC--
Q psy1198 126 AQQLLVSLQAIGDEDQQLQAVVE---MCQMLVMGNEDTLTGFPVKQVVPALITLLS-------------------MDH-- 181 (249)
Q Consensus 126 l~~Ll~~L~S~~D~~~QLeAL~e---LrelLSmsnep~I~~fp~~glVP~LV~iLs-------------------~e~-- 181 (249)
++-||.-|+.+...+.++.|++. ||+.|-.+ +.-+-....||.|++-|. ++|
T Consensus 213 vp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S----~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~~ 288 (1051)
T KOG0168|consen 213 VPVLVALLSHEHNFDIMLLACRALTYLCEVLPRS----SAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHPK 288 (1051)
T ss_pred HHHHHHHHhccccHHHHHHHHHHHHHHHhhccch----hheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhccH
Confidence 35556666665567888766554 45555433 222333467888775553 222
Q ss_pred ------------------CccHHHHHHHHHHHHHhcCc-hhHHHHhccHHHHHHHhhcCCChhHHHHHHHHHHHhhh
Q psy1198 182 ------------------NFDMMNNACRALTYMMEALP-RSSAVVLDAVPTFLEKLQVIQCMDVAEQSLTALEMLSR 239 (249)
Q Consensus 182 ------------------n~dLQ~eAArALTNIasgtp-~qT~~VVGAVPiL~~kLLsi~yiDVAEQALwALenISg 239 (249)
....|..|--.-.|+|.-++ +.-+.|+.+||.|+. |++-++..+-|-+.-||-+|+-
T Consensus 289 AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~sd~f~~v~ealPlL~~-lLs~~D~k~ies~~ic~~ri~d 364 (1051)
T KOG0168|consen 289 AILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIRSDEFHFVMEALPLLTP-LLSYQDKKPIESVCICLTRIAD 364 (1051)
T ss_pred HHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchHHHHHHHHHHH-HHhhccchhHHHHHHHHHHHHH
Confidence 24668888888899997665 445666699999997 6665777788888888877763
No 62
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=87.82 E-value=3 Score=39.01 Aligned_cols=91 Identities=18% Similarity=0.281 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHHHhhcCCC-CCCCCCCc----cChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchhHHHHh---ccH
Q psy1198 140 DQQLQAVVEMCQMLVMGNE-DTLTGFPV----KQVVPALITLLSMDHNFDMMNNACRALTYMMEALPRSSAVVL---DAV 211 (249)
Q Consensus 140 ~~QLeAL~eLrelLSmsne-p~I~~fp~----~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~qT~~VV---GAV 211 (249)
+.|=-+|..|||+--.++| |.|-..|. +.|+..|+++|....++-+-..|.-.|.|++-+-+..+..+. ++|
T Consensus 139 SPqrlaLEaLcKLsV~e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~i 218 (257)
T PF12031_consen 139 SPQRLALEALCKLSVIENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPCI 218 (257)
T ss_pred CHHHHHHHHHHHhheeccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhchH
Confidence 3466689999998777554 22223332 367778888888888888888999999999998888887766 889
Q ss_pred HHHHHHhhcCCChhHHHHHHHHHHH
Q psy1198 212 PTFLEKLQVIQCMDVAEQSLTALEM 236 (249)
Q Consensus 212 PiL~~kLLsi~yiDVAEQALwALen 236 (249)
..|+. |||-+||.....-+
T Consensus 219 ~~Li~------FiE~a~~~~~~~~~ 237 (257)
T PF12031_consen 219 SHLIA------FIEDAEQNAHQVAS 237 (257)
T ss_pred HHHHH------HHHHHHHHHHHHHh
Confidence 98886 77778877665544
No 63
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=87.48 E-value=1.7 Score=33.09 Aligned_cols=60 Identities=15% Similarity=0.182 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHhcCchhHHHHh--ccHHHHHHHhhcCCChhHHHHHHHHHHHhhhh-chhHHhh
Q psy1198 187 NNACRALTYMMEALPRSSAVVL--DAVPTFLEKLQVIQCMDVAEQSLTALEMLSRR-HSKAILQ 247 (249)
Q Consensus 187 ~eAArALTNIasgtp~qT~~VV--GAVPiL~~kLLsi~yiDVAEQALwALenISgD-~p~aIL~ 247 (249)
.-|-||+-||.+ ++.-...+. +.||.+++.-.+.+...|+=-|..+|+.||+- ...++|+
T Consensus 5 KaaLWaighIgs-s~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~~G~~~L~ 67 (73)
T PF14668_consen 5 KAALWAIGHIGS-SPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTEEGAEILD 67 (73)
T ss_pred HHHHHHHHhHhc-ChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCHHHHHHHH
Confidence 357899999988 333333333 89999998666789999999999999999974 3444554
No 64
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=86.90 E-value=10 Score=32.05 Aligned_cols=84 Identities=18% Similarity=0.303 Sum_probs=60.3
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCcc-ChHHHHHHhcCCCCCccHHHHHHHHHHHHHhc-Cchh
Q psy1198 126 AQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVK-QVVPALITLLSMDHNFDMMNNACRALTYMMEA-LPRS 203 (249)
Q Consensus 126 l~~Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp~~-glVP~LV~iLs~e~n~dLQ~eAArALTNIasg-tp~q 203 (249)
++.|...|++ +|+.....|+.-|.++++.. . +... .++..++.+|. |++++++-.|..++..+..- .|.-
T Consensus 27 ~~~l~~~L~D-~~~~VR~~al~~Ls~Li~~d---~---ik~k~~l~~~~l~~l~-D~~~~Ir~~A~~~~~e~~~~~~~~~ 98 (178)
T PF12717_consen 27 LPNLYKCLRD-EDPLVRKTALLVLSHLILED---M---IKVKGQLFSRILKLLV-DENPEIRSLARSFFSELLKKRNPNI 98 (178)
T ss_pred HHHHHHHHCC-CCHHHHHHHHHHHHHHHHcC---c---eeehhhhhHHHHHHHc-CCCHHHHHHHHHHHHHHHHhccchH
Confidence 4566677888 69999999999999998652 2 2233 44588888885 56899999999999999986 3432
Q ss_pred HHHHhccHHHHHHHhhc
Q psy1198 204 SAVVLDAVPTFLEKLQV 220 (249)
Q Consensus 204 T~~VVGAVPiL~~kLLs 220 (249)
+...+|-++..|..
T Consensus 99 ---i~~~~~e~i~~l~~ 112 (178)
T PF12717_consen 99 ---IYNNFPELISSLNN 112 (178)
T ss_pred ---HHHHHHHHHHHHhC
Confidence 33555555555554
No 65
>KOG1820|consensus
Probab=86.76 E-value=6.7 Score=41.93 Aligned_cols=106 Identities=14% Similarity=0.170 Sum_probs=86.2
Q ss_pred HHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchhHHHHh-cc
Q psy1198 132 SLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEALPRSSAVVL-DA 210 (249)
Q Consensus 132 ~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~qT~~VV-GA 210 (249)
.+-+ .|-....+||.++-+.|+-.+ ....-+..+++-.++++...|-|..+-..|+-||+-|+..++.-..-.+ ..
T Consensus 261 ~~~s-~~WK~R~Eale~l~~~l~e~~--~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~~~~v 337 (815)
T KOG1820|consen 261 EMLS-KKWKDRKEALEELVAILEEAK--KEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKYAKNV 337 (815)
T ss_pred hhhc-cchHHHHHHHHHHHHHHhccc--cccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHHHHhh
Confidence 4555 478888999999999987654 1112344689999999999999999999999999999999999987777 99
Q ss_pred HHHHHHHhhcCCChhHHHHHHHHHHHhhhhc
Q psy1198 211 VPTFLEKLQVIQCMDVAEQSLTALEMLSRRH 241 (249)
Q Consensus 211 VPiL~~kLLsi~yiDVAEQALwALenISgD~ 241 (249)
.|.|.++|-+. +-.|.|-.+.|+..|..-.
T Consensus 338 ~p~lld~lkek-k~~l~d~l~~~~d~~~ns~ 367 (815)
T KOG1820|consen 338 FPSLLDRLKEK-KSELRDALLKALDAILNST 367 (815)
T ss_pred cchHHHHhhhc-cHHHHHHHHHHHHHHHhcc
Confidence 99999999884 6678888888888776633
No 66
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=85.89 E-value=3.3 Score=33.45 Aligned_cols=57 Identities=14% Similarity=0.145 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHhcCchhHHHHh--ccHHHHHHHhhcC--CChhHHHHHHHHHHHhhhhchhH
Q psy1198 187 NNACRALTYMMEALPRSSAVVL--DAVPTFLEKLQVI--QCMDVAEQSLTALEMLSRRHSKA 244 (249)
Q Consensus 187 ~eAArALTNIasgtp~qT~~VV--GAVPiL~~kLLsi--~yiDVAEQALwALenISgD~p~a 244 (249)
....|.|.|++--.+..-..|. +.||.+++ ...+ .++=+.|.|+||+-|+-..++..
T Consensus 4 ~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~-~c~iD~~nP~irEwai~aiRnL~e~n~eN 64 (102)
T PF09759_consen 4 RDLVRLIANLCYKNKEVQDLVRELGGIPLILS-CCNIDDHNPFIREWAIFAIRNLCEGNPEN 64 (102)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHcCChHHHHH-hcCCCcccHHHHHHHHHHHHHHHhCCHHH
Confidence 3567899999999988877777 88999987 4444 35779999999999998877753
No 67
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=85.27 E-value=7.3 Score=40.98 Aligned_cols=117 Identities=17% Similarity=0.164 Sum_probs=79.1
Q ss_pred hhhHHHHHH--HHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCCC-----------------
Q psy1198 120 EDTATKAQQ--LLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMD----------------- 180 (249)
Q Consensus 120 s~~~~rl~~--Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~e----------------- 180 (249)
+..-+++.. ++-.++-. |...|+.-++.++.-++|.|... .+ -+|...+++|..+
T Consensus 202 ~~~isqYHalGlLyq~kr~-dkma~lklv~hf~~n~smknq~a--~V---~lvr~~~~ll~~n~q~~~q~rpfL~~wls~ 275 (898)
T COG5240 202 GNPISQYHALGLLYQSKRT-DKMAQLKLVEHFRGNASMKNQLA--GV---LLVRATVELLKENSQALLQLRPFLNSWLSD 275 (898)
T ss_pred CChHHHHHHHHHHHHHhcc-cHHHHHHHHHHhhcccccccchh--he---ehHHHHHHHHHhChHHHHHHHHHHHHHhcC
Confidence 333344433 46677774 88899999999999999977533 11 1333444444321
Q ss_pred CCccHHHHHHHHHHHHHhcCchhHHHHh-ccHHHHHHHhhcCCChhHHHHHHHHHHHhhhhchhHH
Q psy1198 181 HNFDMMNNACRALTYMMEALPRSSAVVL-DAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRHSKAI 245 (249)
Q Consensus 181 ~n~dLQ~eAArALTNIasgtp~qT~~VV-GAVPiL~~kLLsi~yiDVAEQALwALenISgD~p~aI 245 (249)
.-..+++|+||+++-+++-+ -..-.+ .+|..|.. +|.++..-++=-|+.+|-.||...|..|
T Consensus 276 k~emV~lE~Ar~v~~~~~~n--v~~~~~~~~vs~L~~-fL~s~rv~~rFsA~Riln~lam~~P~kv 338 (898)
T COG5240 276 KFEMVFLEAARAVCALSEEN--VGSQFVDQTVSSLRT-FLKSTRVVLRFSAMRILNQLAMKYPQKV 338 (898)
T ss_pred cchhhhHHHHHHHHHHHHhc--cCHHHHHHHHHHHHH-HHhcchHHHHHHHHHHHHHHHhhCCcee
Confidence 12467999999999987755 122233 66777764 7788888888889999999999888754
No 68
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=85.06 E-value=12 Score=31.36 Aligned_cols=111 Identities=13% Similarity=0.115 Sum_probs=75.9
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchh
Q psy1198 124 TKAQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEALPRS 203 (249)
Q Consensus 124 ~rl~~Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~q 203 (249)
+.+.++|+...+......-.....++|+++..... .....+..|.+=|+. .||.+|+.|-..|--++.-....
T Consensus 3 ~~~~~~I~kATs~~l~~~dw~~ileicD~In~~~~------~~k~a~ral~krl~~-~n~~vql~AL~LLe~~vkNCG~~ 75 (142)
T cd03569 3 SEFDELIEKATSELLGEPDLASILEICDMIRSKDV------QPKYAMRALKKRLLS-KNPNVQLYALLLLESCVKNCGTH 75 (142)
T ss_pred chHHHHHHHHcCcccCccCHHHHHHHHHHHhCCCC------CHHHHHHHHHHHHcC-CChHHHHHHHHHHHHHHHHCCHH
Confidence 34777887776644445557778899999965321 235677788877765 57999999977777776655555
Q ss_pred HHHHh---ccHHHHHHHhhcCCChhHHHHHHHHHHHhhhhc
Q psy1198 204 SAVVL---DAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRH 241 (249)
Q Consensus 204 T~~VV---GAVPiL~~kLLsi~yiDVAEQALwALenISgD~ 241 (249)
.+..| .-+..|+..+......+|.+.++..+..-+...
T Consensus 76 fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f 116 (142)
T cd03569 76 FHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWALAF 116 (142)
T ss_pred HHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHHh
Confidence 55545 556666643333567889999999888866544
No 69
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=85.02 E-value=7.6 Score=31.87 Aligned_cols=110 Identities=14% Similarity=0.108 Sum_probs=72.6
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchh
Q psy1198 124 TKAQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEALPRS 203 (249)
Q Consensus 124 ~rl~~Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~q 203 (249)
..+.++|+...+..-+..-.....++|+++.... ......+..|.+-|++ .+|.+|+.|-..|-.++.-....
T Consensus 4 ~~~~~li~kATs~~~~~~Dw~~~l~icD~i~~~~------~~~kea~~~l~krl~~-~~~~vq~~aL~lld~lvkNcg~~ 76 (140)
T PF00790_consen 4 SSITELIEKATSESLPSPDWSLILEICDLINSSP------DGAKEAARALRKRLKH-GNPNVQLLALTLLDALVKNCGPR 76 (140)
T ss_dssp SHHHHHHHHHT-TTSSS--HHHHHHHHHHHHTST------THHHHHHHHHHHHHTT-SSHHHHHHHHHHHHHHHHHSHHH
T ss_pred ChHHHHHHHHhCcCCCCCCHHHHHHHHHHHHcCC------ccHHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHHHcCCHH
Confidence 4577888877653334445667788999987751 1235677888888876 67999999988888888877666
Q ss_pred HHHHh---ccHHHHHHHhhc-CCChh---HHHHHHHHHHHhhhhc
Q psy1198 204 SAVVL---DAVPTFLEKLQV-IQCMD---VAEQSLTALEMLSRRH 241 (249)
Q Consensus 204 T~~VV---GAVPiL~~kLLs-i~yiD---VAEQALwALenISgD~ 241 (249)
.+.-| .-+-.|+. |.. ..... |.|+++..|..-+...
T Consensus 77 f~~ev~~~~fl~~l~~-l~~~~~~~~~~~Vk~k~l~ll~~W~~~f 120 (140)
T PF00790_consen 77 FHREVASKEFLDELVK-LIKSKKTDPETPVKEKILELLQEWAEAF 120 (140)
T ss_dssp HHHHHTSHHHHHHHHH-HHHHTTTHHHSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhHHHHHHHHHH-HHccCCCCchhHHHHHHHHHHHHHHHHH
Confidence 55555 44445553 443 33333 8999997776655444
No 70
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=85.00 E-value=8.9 Score=37.55 Aligned_cols=61 Identities=21% Similarity=0.034 Sum_probs=44.1
Q ss_pred HHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchhHHHHhccHHHHHHHhhcCCChhHHHHHHHHHHHhhhhc
Q psy1198 170 VPALITLLSMDHNFDMMNNACRALTYMMEALPRSSAVVLDAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRH 241 (249)
Q Consensus 170 VP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~qT~~VVGAVPiL~~kLLsi~yiDVAEQALwALenISgD~ 241 (249)
.+.++.+|+ +.++.+.-+|+|+|-.|-+. .++|.|.. .+..++.+|++-++++|..+-.+.
T Consensus 149 ~~~L~~~L~-d~d~~Vra~A~raLG~l~~~---------~a~~~L~~-al~d~~~~VR~aA~~al~~lG~~~ 209 (410)
T TIGR02270 149 GPALEAALT-HEDALVRAAALRALGELPRR---------LSESTLRL-YLRDSDPEVRFAALEAGLLAGSRL 209 (410)
T ss_pred HHHHHHHhc-CCCHHHHHHHHHHHHhhccc---------cchHHHHH-HHcCCCHHHHHHHHHHHHHcCCHh
Confidence 466777776 44577777788877766531 56777774 677789999999999998874433
No 71
>KOG2032|consensus
Probab=84.69 E-value=7.5 Score=39.65 Aligned_cols=111 Identities=13% Similarity=0.130 Sum_probs=65.8
Q ss_pred HHHHHHHHHHhcCC--CHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCC---CCCccHHHHHHHHHHHHHh
Q psy1198 124 TKAQQLLVSLQAIG--DEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSM---DHNFDMMNNACRALTYMME 198 (249)
Q Consensus 124 ~rl~~Ll~~L~S~~--D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~---e~n~dLQ~eAArALTNIas 198 (249)
.++.+|+..+-+.. ....++.....++--+.. ++- ++..+++..++..|.+ +.+-.+--.|||+|-|+++
T Consensus 213 ~~~~~il~q~~ss~ts~~~~~ritd~Af~ael~~--~~~---l~~~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as 287 (533)
T KOG2032|consen 213 LEMGKILAQLLSSITSEKENGRITDIAFFAELKR--PKE---LDKTGLLGSVLLSLANKATDPSAKSRGMACRGLGNTAS 287 (533)
T ss_pred ccHHHHHhhcccccchhcccchHHHHHHHHHHhC--ccc---ccccccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhc
Confidence 34556665543321 112234343444333333 333 3345666666666643 3345778899999999999
Q ss_pred cCchhHHHHh-ccHHHHHHHhhcCCChhHHHHHHHHHHHhhh
Q psy1198 199 ALPRSSAVVL-DAVPTFLEKLQVIQCMDVAEQSLTALEMLSR 239 (249)
Q Consensus 199 gtp~qT~~VV-GAVPiL~~kLLsi~yiDVAEQALwALenISg 239 (249)
+.|.....-+ -.|-.++.-|.+-.+.||.=|++.+|-++..
T Consensus 288 ~~P~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~ 329 (533)
T KOG2032|consen 288 GAPDKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLE 329 (533)
T ss_pred cCcHHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHH
Confidence 9998765544 3333333334455568999999999887654
No 72
>KOG1293|consensus
Probab=84.41 E-value=8.2 Score=40.43 Aligned_cols=110 Identities=21% Similarity=0.232 Sum_probs=83.3
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCCCC-CccHHHHHHHHHHHHHhcCchhHHH
Q psy1198 128 QLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDH-NFDMMNNACRALTYMMEALPRSSAV 206 (249)
Q Consensus 128 ~Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~e~-n~dLQ~eAArALTNIasgtp~qT~~ 206 (249)
.++..+.. -||...+.+...++.++ .++.++-..++..|-||.|..+++.++ .++++.+.+-.|-..+.+.-.-...
T Consensus 13 ~~l~~L~~-~dpe~lvrai~~~kN~v-ig~~~~K~~~ik~GAv~~Ll~L~s~e~~s~~~k~~~~~llns~f~~eqd~v~s 90 (678)
T KOG1293|consen 13 DLLYRLLH-LDPEQLVRAIYMSKNLV-IGFTDNKETNIKLGAVELLLALLSLEDGSTELKNGFAVLLNSLFLGEQDKVDS 90 (678)
T ss_pred HHHHhhhc-CCHHHHHHHHHHhcchh-hcCCCccchhhhhcchHHHHhhccccCCchhhhhhHHHHHHhHHhhccchHHH
Confidence 34455666 37777788888887665 455666666888899999999998664 6788877766777778877777777
Q ss_pred Hh--ccHHHHHHHhhcCCChhHHHHHHHHHHHhhh
Q psy1198 207 VL--DAVPTFLEKLQVIQCMDVAEQSLTALEMLSR 239 (249)
Q Consensus 207 VV--GAVPiL~~kLLsi~yiDVAEQALwALenISg 239 (249)
|+ .-+|.|.+.|.+.++..+.|-++.+|-+|=.
T Consensus 91 vL~~~~ll~Ll~LLs~sD~~~~le~~l~~lR~Ife 125 (678)
T KOG1293|consen 91 VLRIIELLKLLQLLSESDSLNVLEKTLRCLRTIFE 125 (678)
T ss_pred HHHHhhHHHHHHHhcCcchHhHHHHHHHHHHHHHh
Confidence 77 8899999755554448899999999988743
No 73
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=84.21 E-value=4.3 Score=40.21 Aligned_cols=106 Identities=18% Similarity=0.193 Sum_probs=68.9
Q ss_pred HHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCCCC-CccHHHHHHHHHHHHHhcCchhHHHHh-
Q psy1198 131 VSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDH-NFDMMNNACRALTYMMEALPRSSAVVL- 208 (249)
Q Consensus 131 ~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~e~-n~dLQ~eAArALTNIasgtp~qT~~VV- 208 (249)
..+++.++...+..+++.|..+|.... .=..|-....|+.|+++|+... +.++|++++=||-=+ +=.++......
T Consensus 150 ~~l~~~~~~~~~~~~v~~L~~LL~~~~--~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlL-SF~~~~~~~~~~ 226 (429)
T cd00256 150 EQLNNITNNDYVQTAARCLQMLLRVDE--YRFAFVLADGVPTLVKLLSNATLGFQLQYQSIFCIWLL-TFNPHAAEVLKR 226 (429)
T ss_pred HHhhccCCcchHHHHHHHHHHHhCCch--HHHHHHHccCHHHHHHHHhhccccHHHHHHHHHHHHHH-hccHHHHHhhcc
Confidence 344442345556677777777775521 1112434457999999998755 678988876444322 11222223333
Q ss_pred -ccHHHHHHHhhcCCChhHHHHHHHHHHHhhh
Q psy1198 209 -DAVPTFLEKLQVIQCMDVAEQSLTALEMLSR 239 (249)
Q Consensus 209 -GAVPiL~~kLLsi~yiDVAEQALwALenISg 239 (249)
+.||.|++-+..+.-..|--=|+-+|-|+..
T Consensus 227 ~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~ 258 (429)
T cd00256 227 LSLIQDLSDILKESTKEKVIRIVLAIFRNLIS 258 (429)
T ss_pred ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhh
Confidence 8999999977788878888888999999876
No 74
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=84.01 E-value=11 Score=37.02 Aligned_cols=69 Identities=25% Similarity=0.123 Sum_probs=45.3
Q ss_pred CCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchhHHHHhccHHHHHHHhhcCCChhHHHHHHHHHHHhhhhchh
Q psy1198 164 FPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEALPRSSAVVLDAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRHSK 243 (249)
Q Consensus 164 fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~qT~~VVGAVPiL~~kLLsi~yiDVAEQALwALenISgD~p~ 243 (249)
+.....++.|+..|+.+ +|.++..+..+|.+.- ....+.+.. +++.++..|.++++.+|+.|-.....
T Consensus 113 i~~~~a~~~L~~~L~~~-~p~vR~aal~al~~r~----------~~~~~~L~~-~L~d~d~~Vra~A~raLG~l~~~~a~ 180 (410)
T TIGR02270 113 LGGRQAEPWLEPLLAAS-EPPGRAIGLAALGAHR----------HDPGPALEA-ALTHEDALVRAAALRALGELPRRLSE 180 (410)
T ss_pred CCchHHHHHHHHHhcCC-ChHHHHHHHHHHHhhc----------cChHHHHHH-HhcCCCHHHHHHHHHHHHhhccccch
Confidence 44456777777777643 4666666555554411 145667775 66667888999999999988655443
Q ss_pred H
Q psy1198 244 A 244 (249)
Q Consensus 244 a 244 (249)
.
T Consensus 181 ~ 181 (410)
T TIGR02270 181 S 181 (410)
T ss_pred H
Confidence 3
No 75
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=83.95 E-value=5.2 Score=36.57 Aligned_cols=72 Identities=19% Similarity=0.296 Sum_probs=55.9
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCC-------ccChHHHHHHhcCCCCCccHHHHHHHHHHHH
Q psy1198 124 TKAQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFP-------VKQVVPALITLLSMDHNFDMMNNACRALTYM 196 (249)
Q Consensus 124 ~rl~~Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp-------~~glVP~LV~iLs~e~n~dLQ~eAArALTNI 196 (249)
..+.-++..++. +++..+..|++-+.++|..-.-+.++... ...++..|.++|..+ ++++|..||-.|.-+
T Consensus 64 ~~l~l~~~~~~~-~~~~v~~~al~~l~Dll~~~g~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~-~~~~~~~a~EGl~KL 141 (298)
T PF12719_consen 64 EHLPLFLQALQK-DDEEVKITALKALFDLLLTHGIDIFDSESDNDESVDSKSLLKILTKFLDSE-NPELQAIAVEGLCKL 141 (298)
T ss_pred HHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHcCchhccchhccCccchHhHHHHHHHHHHhcC-CHHHHHHHHHHHHHH
Confidence 345556777766 58999999999999999886555555433 257888999999876 799999999998885
Q ss_pred H
Q psy1198 197 M 197 (249)
Q Consensus 197 a 197 (249)
+
T Consensus 142 l 142 (298)
T PF12719_consen 142 L 142 (298)
T ss_pred H
Confidence 4
No 76
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=83.08 E-value=9 Score=34.70 Aligned_cols=77 Identities=27% Similarity=0.311 Sum_probs=55.3
Q ss_pred CCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcC-----------------------ch--hH-HHHh--------c
Q psy1198 164 FPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEAL-----------------------PR--SS-AVVL--------D 209 (249)
Q Consensus 164 fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgt-----------------------p~--qT-~~VV--------G 209 (249)
+.....+|.|+++|+.+++..+...|+|+|..+-+-. +. +- .++. -
T Consensus 101 ~~~~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~~l~~~~~~~ 180 (335)
T COG1413 101 LGDPEAVPPLVELLENDENEGVRAAAARALGKLGDERALDPLLEALQDEDSGSAAAALDAALLDVRAAAAEALGELGDPE 180 (335)
T ss_pred cCChhHHHHHHHHHHcCCcHhHHHHHHHHHHhcCchhhhHHHHHHhccchhhhhhhhccchHHHHHHHHHHHHHHcCChh
Confidence 4456789999999998778888889999988776644 10 11 1111 5
Q ss_pred cHHHHHHHhhcCCChhHHHHHHHHHHHhhhhc
Q psy1198 210 AVPTFLEKLQVIQCMDVAEQSLTALEMLSRRH 241 (249)
Q Consensus 210 AVPiL~~kLLsi~yiDVAEQALwALenISgD~ 241 (249)
++|.+.+ ++..+..+|...+..+|+.|..+.
T Consensus 181 ~~~~l~~-~l~~~~~~vr~~Aa~aL~~~~~~~ 211 (335)
T COG1413 181 AIPLLIE-LLEDEDADVRRAAASALGQLGSEN 211 (335)
T ss_pred hhHHHHH-HHhCchHHHHHHHHHHHHHhhcch
Confidence 6777776 666677789999999998887763
No 77
>KOG1824|consensus
Probab=82.56 E-value=4 Score=44.65 Aligned_cols=87 Identities=21% Similarity=0.272 Sum_probs=63.2
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchhHHHH
Q psy1198 128 QLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEALPRSSAVV 207 (249)
Q Consensus 128 ~Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~qT~~V 207 (249)
.|++.+.+ .|-+-.+.|+..|-.-|-.. --.|+.=....+|..++++|+ +.|+++|.+|.+||--|.+-.++.- +
T Consensus 9 ~Llekmts-sDKDfRfMAtsDLm~eLqkd-si~Ld~dSe~kvv~~lLklL~-D~ngEVQnlAVKClg~lvsKvke~~--l 83 (1233)
T KOG1824|consen 9 NLLEKMTS-SDKDFRFMATSDLMTELQKD-SIKLDDDSERKVVKMLLKLLE-DKNGEVQNLAVKCLGPLVSKVKEDQ--L 83 (1233)
T ss_pred HHHHHccC-CCcchhhhhHHHHHHHHHhh-hhhccccchhHHHHHHHHHHh-ccCcHHHHHHHHHHHHHHhhchHHH--H
Confidence 67888888 48888999999988777664 223333223478999999997 4689999999999998887776542 2
Q ss_pred hccHHHHHHHhh
Q psy1198 208 LDAVPTFLEKLQ 219 (249)
Q Consensus 208 VGAVPiL~~kLL 219 (249)
.-.|..||.+++
T Consensus 84 e~~ve~L~~~~~ 95 (1233)
T KOG1824|consen 84 ETIVENLCSNML 95 (1233)
T ss_pred HHHHHHHhhhhc
Confidence 244555665544
No 78
>PF05536 Neurochondrin: Neurochondrin
Probab=81.59 E-value=12 Score=37.95 Aligned_cols=114 Identities=16% Similarity=0.253 Sum_probs=73.4
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCC------CCCccChHHHHHHhcCCCC--CccH-HHHHHHHH
Q psy1198 123 ATKAQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLT------GFPVKQVVPALITLLSMDH--NFDM-MNNACRAL 193 (249)
Q Consensus 123 ~~rl~~Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~------~fp~~glVP~LV~iLs~e~--n~dL-Q~eAArAL 193 (249)
...+++.+.-|++. |...+|.+|--+-|++.-..++... .+. -.|+.+|.+--..+. +++. +-.|--.|
T Consensus 4 ~~~l~~c~~lL~~~-~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig-~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL 81 (543)
T PF05536_consen 4 SASLEKCLSLLKSA-DDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIG-FKFLDRLLRTGSVPSDCPPEEYLSLAVSVL 81 (543)
T ss_pred hHHHHHHHHHhccC-CcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcC-hhHHHHHhcCCCCCCCCCHHHHHHHHHHHH
Confidence 45788899899985 6777899998888888643322211 122 245555554433322 3333 44455555
Q ss_pred HHHHhcCchhH--HHHhccHHHHHHHhhcCCChhHHHHHHHHHHHhhh
Q psy1198 194 TYMMEALPRSS--AVVLDAVPTFLEKLQVIQCMDVAEQSLTALEMLSR 239 (249)
Q Consensus 194 TNIasgtp~qT--~~VVGAVPiL~~kLLsi~yiDVAEQALwALenISg 239 (249)
.-.+. .|+-. ..+++-||.|++-+.+.+...+.+.|+++|-.|+.
T Consensus 82 ~~f~~-~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias 128 (543)
T PF05536_consen 82 AAFCR-DPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIAS 128 (543)
T ss_pred HHHcC-ChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHc
Confidence 55554 55543 55669999999866666555899999999999983
No 79
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=81.07 E-value=9.9 Score=39.01 Aligned_cols=109 Identities=15% Similarity=0.220 Sum_probs=49.3
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCC--ccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCc
Q psy1198 124 TKAQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFP--VKQVVPALITLLSMDHNFDMMNNACRALTYMMEALP 201 (249)
Q Consensus 124 ~rl~~Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp--~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp 201 (249)
..++.|++..+. ++...+| |-+-+.+.... || .+..+-+++.+... ++.++...|.+.|-.+|-.+|
T Consensus 23 ~~y~~il~~~kg-~~k~K~L-aaq~I~kffk~--------FP~l~~~Ai~a~~DLcED-ed~~iR~~aik~lp~~ck~~~ 91 (556)
T PF05918_consen 23 EDYKEILDGVKG-SPKEKRL-AAQFIPKFFKH--------FPDLQEEAINAQLDLCED-EDVQIRKQAIKGLPQLCKDNP 91 (556)
T ss_dssp HHHHHHHHGGGS--HHHHHH-HHHHHHHHHCC---------GGGHHHHHHHHHHHHT--SSHHHHHHHHHHGGGG--T--
T ss_pred HHHHHHHHHccC-CHHHHHH-HHHHHHHHHhh--------ChhhHHHHHHHHHHHHhc-ccHHHHHHHHHhHHHHHHhHH
Confidence 355666666654 2333333 33444444322 33 22445555555543 346666666666666666666
Q ss_pred hhHHHHhccHHHHHHHhhcCCChhHHHHHHHHHHHhhhhchhHHhh
Q psy1198 202 RSSAVVLDAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRHSKAILQ 247 (249)
Q Consensus 202 ~qT~~VVGAVPiL~~kLLsi~yiDVAEQALwALenISgD~p~aIL~ 247 (249)
+.+..|+ -+|++ ||.++...-.+.+=++|=.|-.-.|+..|.
T Consensus 92 ~~v~kva---DvL~Q-lL~tdd~~E~~~v~~sL~~ll~~d~k~tL~ 133 (556)
T PF05918_consen 92 EHVSKVA---DVLVQ-LLQTDDPVELDAVKNSLMSLLKQDPKGTLT 133 (556)
T ss_dssp T-HHHHH---HHHHH-HTT---HHHHHHHHHHHHHHHHH-HHHHHH
T ss_pred HHHhHHH---HHHHH-HHhcccHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 6655443 35565 455555445555555555555555555443
No 80
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=80.82 E-value=8.4 Score=34.23 Aligned_cols=118 Identities=13% Similarity=0.180 Sum_probs=69.3
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCC-CCCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchhH
Q psy1198 126 AQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLT-GFPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEALPRSS 204 (249)
Q Consensus 126 l~~Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~-~fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~qT 204 (249)
++-.+++|+..++| -.+.|.+.+.++|.....+-|- -+| .+|+.|-+-|+. .++++.-.+-.||-.|+-..+.--
T Consensus 40 Lpif~dGL~Et~~P-y~flA~~g~~dll~~~~~~kilPvlP--qLI~plk~AL~t-r~~~V~~~~L~~Lq~Lv~~~~~vG 115 (183)
T PF10274_consen 40 LPIFFDGLRETEHP-YRFLARQGIKDLLERGGGEKILPVLP--QLIIPLKRALNT-RDPEVFCATLKALQQLVTSSDMVG 115 (183)
T ss_pred HHHHHhhhhccCcc-HHHHHHHHHHHHHHhcchhHHHHHHH--HHHHHHHHHHhC-CCHHHHHHHHHHHHHHHHhhhhhh
Confidence 46668899986444 4577899999999873233221 222 455566666653 468998889999999866555444
Q ss_pred HHHh----ccHHHHH----HHh---------hcCCChhHHHHHHHHHHHhhhhchhHHhh
Q psy1198 205 AVVL----DAVPTFL----EKL---------QVIQCMDVAEQSLTALEMLSRRHSKAILQ 247 (249)
Q Consensus 205 ~~VV----GAVPiL~----~kL---------Lsi~yiDVAEQALwALenISgD~p~aIL~ 247 (249)
.+.| --.|+|- .+. ..-..-|+-+..|+.||.--|+..-.++|
T Consensus 116 ~aLvPyyrqLLp~ln~f~~k~~n~gd~i~y~~~~~~~dlI~etL~~lE~~GG~dA~~nIK 175 (183)
T PF10274_consen 116 EALVPYYRQLLPVLNLFKNKNVNLGDGIDYRKRKNLGDLIQETLELLERNGGPDAFINIK 175 (183)
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHhcChhHHHHHH
Confidence 5555 4455554 110 01112355556666666655554444433
No 81
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=80.18 E-value=4 Score=40.40 Aligned_cols=70 Identities=21% Similarity=0.282 Sum_probs=58.2
Q ss_pred ChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchhHHHHh--ccHHHHHHHhhcCCChhHHHHHHHHHHHhh
Q psy1198 168 QVVPALITLLSMDHNFDMMNNACRALTYMMEALPRSSAVVL--DAVPTFLEKLQVIQCMDVAEQSLTALEMLS 238 (249)
Q Consensus 168 glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~qT~~VV--GAVPiL~~kLLsi~yiDVAEQALwALenIS 238 (249)
.++..|+++|+..++|...-.||-=|..++.-.|+--..+- |+=...- +|++.++.+|+.+||.|+.+|=
T Consensus 353 ~llk~L~~iL~~s~d~~~laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM-~Lm~h~d~~Vr~eAL~avQklm 424 (429)
T cd00256 353 ELLKILIHLLETSVDPIILAVACHDIGEYVRHYPRGKDVVEQLGGKQRVM-RLLNHEDPNVRYEALLAVQKLM 424 (429)
T ss_pred HHHHHHHHHHhcCCCcceeehhhhhHHHHHHHCccHHHHHHHcCcHHHHH-HHhcCCCHHHHHHHHHHHHHHH
Confidence 67899999997777788888899999999999987666554 7655555 5889999999999999999873
No 82
>PTZ00429 beta-adaptin; Provisional
Probab=80.16 E-value=20 Score=37.86 Aligned_cols=82 Identities=15% Similarity=0.083 Sum_probs=57.9
Q ss_pred HHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchhHHHHhcc
Q psy1198 131 VSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEALPRSSAVVLDA 210 (249)
Q Consensus 131 ~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~qT~~VVGA 210 (249)
..|.+ .+|+..=.|...+.|+.... |. .++..+|++.|.++|. +.+|.++..|..+|+.|.+-.|.........
T Consensus 147 k~L~D-~~pYVRKtAalai~Kly~~~--pe--lv~~~~~~~~L~~LL~-D~dp~Vv~nAl~aL~eI~~~~~~~l~l~~~~ 220 (746)
T PTZ00429 147 RAVAD-PDPYVRKTAAMGLGKLFHDD--MQ--LFYQQDFKKDLVELLN-DNNPVVASNAAAIVCEVNDYGSEKIESSNEW 220 (746)
T ss_pred HHhcC-CCHHHHHHHHHHHHHHHhhC--cc--cccccchHHHHHHHhc-CCCccHHHHHHHHHHHHHHhCchhhHHHHHH
Confidence 34555 57887777788888877653 22 2566789999999886 5689999999999999988766433222255
Q ss_pred HHHHHHHh
Q psy1198 211 VPTFLEKL 218 (249)
Q Consensus 211 VPiL~~kL 218 (249)
+..||+.|
T Consensus 221 ~~~Ll~~L 228 (746)
T PTZ00429 221 VNRLVYHL 228 (746)
T ss_pred HHHHHHHh
Confidence 55666544
No 83
>KOG1061|consensus
Probab=79.51 E-value=9.4 Score=40.41 Aligned_cols=109 Identities=25% Similarity=0.256 Sum_probs=74.4
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchhHHH
Q psy1198 127 QQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEALPRSSAV 206 (249)
Q Consensus 127 ~~Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~qT~~ 206 (249)
+.|+..+++ ++++.+..+..-+.++-... .+.+...+|++.|-.++. +++|.+--.|-++|..|.+-.|.....
T Consensus 124 ~Pl~~~l~d-~~~yvRktaa~~vakl~~~~----~~~~~~~gl~~~L~~ll~-D~~p~VVAnAlaaL~eI~e~~~~~~~~ 197 (734)
T KOG1061|consen 124 DPLLKCLKD-DDPYVRKTAAVCVAKLFDID----PDLVEDSGLVDALKDLLS-DSNPMVVANALAALSEIHESHPSVNLL 197 (734)
T ss_pred HHHHHhccC-CChhHHHHHHHHHHHhhcCC----hhhccccchhHHHHHHhc-CCCchHHHHHHHHHHHHHHhCCCCCcc
Confidence 556666787 58888887777777776553 334667899999999998 678999999999999999988862221
Q ss_pred HhccHHHHHHHhhcCCChhHHHH-HHHHHHHhhhhchhH
Q psy1198 207 VLDAVPTFLEKLQVIQCMDVAEQ-SLTALEMLSRRHSKA 244 (249)
Q Consensus 207 VVGAVPiL~~kLLsi~yiDVAEQ-ALwALenISgD~p~a 244 (249)
--++.++.+|++. -.+.-|= -+..|+..+...|+.
T Consensus 198 --~l~~~~~~~lL~a-l~ec~EW~qi~IL~~l~~y~p~d 233 (734)
T KOG1061|consen 198 --ELNPQLINKLLEA-LNECTEWGQIFILDCLAEYVPKD 233 (734)
T ss_pred --cccHHHHHHHHHH-HHHhhhhhHHHHHHHHHhcCCCC
Confidence 4556666666652 1112221 123566777776664
No 84
>KOG2320|consensus
Probab=78.31 E-value=7.2 Score=40.54 Aligned_cols=78 Identities=19% Similarity=0.357 Sum_probs=51.2
Q ss_pred hhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCC--CCCccChHHHHHHhcCCCCCccHHHHHHHHHHHHH
Q psy1198 120 EDTATKAQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLT--GFPVKQVVPALITLLSMDHNFDMMNNACRALTYMM 197 (249)
Q Consensus 120 s~~~~rl~~Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~--~fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIa 197 (249)
....+++...+..+...-.|..++.+|..-||+|-+.-..... .-+-|.|+|.|+.+|.+-+-+++-.| +-||+
T Consensus 400 ~~~mEqvk~k~~~m~r~YSP~kkl~~Llk~ckLly~~~~~~~~g~~~gaDdflP~lsyvla~s~~~e~~~e----~eYM~ 475 (651)
T KOG2320|consen 400 DVLMEQVKQKFTAMQRRYSPSKKLHALLKACKLLYAGMGGDNEGLAYGADDFLPVLSYVLARSDLQELLTE----AEYMM 475 (651)
T ss_pred HHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHhccCCCCCCCCchhhHHHHHHHHHhcchhcchHH----HHHHH
Confidence 3344445444444433247999999999999999775332222 25678999999999998776666556 34555
Q ss_pred hcCc
Q psy1198 198 EALP 201 (249)
Q Consensus 198 sgtp 201 (249)
|-++
T Consensus 476 ELLd 479 (651)
T KOG2320|consen 476 ELLD 479 (651)
T ss_pred HhcC
Confidence 5444
No 85
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=78.26 E-value=7.6 Score=34.18 Aligned_cols=113 Identities=16% Similarity=0.194 Sum_probs=73.1
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhhcCC-------CCC--CCCCC---------ccChHHHHHHhcCCCCCccHHHHH
Q psy1198 128 QLLVSLQAIGDEDQQLQAVVEMCQMLVMGN-------EDT--LTGFP---------VKQVVPALITLLSMDHNFDMMNNA 189 (249)
Q Consensus 128 ~Ll~~L~S~~D~~~QLeAL~eLrelLSmsn-------ep~--I~~fp---------~~glVP~LV~iLs~e~n~dLQ~eA 189 (249)
.|+.-|-.+.++.....|++-+..+|.-.+ |.. -..|. ...+=..|+..|+.|.++.++.+.
T Consensus 43 sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~ 122 (182)
T PF13251_consen 43 SLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEESKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQL 122 (182)
T ss_pred chhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHH
Confidence 444444333566666777777776664432 111 11121 113445678888889999999999
Q ss_pred HHHHHHHHhcCchhH--HHHh-ccHHHHHHHhhcCCChhHHHHHHHHHHHhhhhc
Q psy1198 190 CRALTYMMEALPRSS--AVVL-DAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRH 241 (249)
Q Consensus 190 ArALTNIasgtp~qT--~~VV-GAVPiL~~kLLsi~yiDVAEQALwALenISgD~ 241 (249)
.+||+.+.+.+|.+- .-++ ..|..+.. ++...+.||...++-+|+-+..-.
T Consensus 123 lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~-~l~~~d~~v~v~~l~~~~~l~s~~ 176 (182)
T PF13251_consen 123 LKCLAVLVQATPYHRLPPGLLTEVVTQVRP-LLRHRDPNVRVAALSCLGALLSVQ 176 (182)
T ss_pred HHHHHHHHccCChhhcCHhHHHHHHHHHHH-HHhcCCCcHHHHHHHHHHHHHcCC
Confidence 999999999999873 2223 44444443 334478999999999999876543
No 86
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=77.82 E-value=22 Score=29.11 Aligned_cols=107 Identities=12% Similarity=0.114 Sum_probs=68.6
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchhHHH
Q psy1198 127 QQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEALPRSSAV 206 (249)
Q Consensus 127 ~~Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~qT~~ 206 (249)
+++|+...+...+..-.....++|+++.... ......+..|-+=|++ .+|..|+.|-..|=.++.-.....+.
T Consensus 2 ~~~i~kATs~~l~~~dw~~~l~icD~i~~~~------~~~k~a~r~l~krl~~-~n~~v~l~AL~lLe~~vkNcg~~f~~ 74 (133)
T smart00288 2 ERLIDKATSPSLLEEDWELILEICDLINSTP------DGPKDAVRLLKKRLNN-KNPHVALLALTLLDACVKNCGSKFHL 74 (133)
T ss_pred hhHHHHHcCcCCCCcCHHHHHHHHHHHhCCC------ccHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHHCCHHHHH
Confidence 3455555443333444667788888885532 1234567777777764 57899999988887777766665555
Q ss_pred Hh---ccHHHHHHHhhcCCC-hh-HHHHHHHHHHHhhhhc
Q psy1198 207 VL---DAVPTFLEKLQVIQC-MD-VAEQSLTALEMLSRRH 241 (249)
Q Consensus 207 VV---GAVPiL~~kLLsi~y-iD-VAEQALwALenISgD~ 241 (249)
-| .-+..|+. |....+ .+ |.+.++..+..-+...
T Consensus 75 ev~s~~fl~~L~~-l~~~~~~~~~Vk~kil~li~~W~~~f 113 (133)
T smart00288 75 EVASKEFLNELVK-LIKPKYPLPLVKKRILELIQEWADAF 113 (133)
T ss_pred HHHhHHHHHHHHH-HHcCCCCcHHHHHHHHHHHHHHHHHH
Confidence 55 55666664 555544 34 8999998887765543
No 87
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=75.60 E-value=7.8 Score=38.03 Aligned_cols=70 Identities=13% Similarity=0.152 Sum_probs=48.9
Q ss_pred HHhhcCCCCCCCCCCccChHHHHHHhc---------CCCCCccHHHHHHHHHHHHHhcCchhHHHHh--ccHHHHHHHhh
Q psy1198 151 QMLVMGNEDTLTGFPVKQVVPALITLL---------SMDHNFDMMNNACRALTYMMEALPRSSAVVL--DAVPTFLEKLQ 219 (249)
Q Consensus 151 elLSmsnep~I~~fp~~glVP~LV~iL---------s~e~n~dLQ~eAArALTNIasgtp~qT~~VV--GAVPiL~~kLL 219 (249)
|+|+++. ..++.+.....+..|.++= ....++++-.||.|||.|++=-.|..-..++ +..+.+|++|.
T Consensus 6 RiLsRd~-~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~~~Lk 84 (446)
T PF10165_consen 6 RILSRDP-TGLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLCERLK 84 (446)
T ss_pred HHHccCc-ccchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHHH
Confidence 4555542 2333344445555555544 2345789999999999999998887777777 88999999887
Q ss_pred cC
Q psy1198 220 VI 221 (249)
Q Consensus 220 si 221 (249)
..
T Consensus 85 ~~ 86 (446)
T PF10165_consen 85 NY 86 (446)
T ss_pred cc
Confidence 64
No 88
>KOG0567|consensus
Probab=75.45 E-value=21 Score=34.03 Aligned_cols=99 Identities=21% Similarity=0.184 Sum_probs=68.1
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCC-CCCccHHHHHHHHHHHHHhcCc
Q psy1198 123 ATKAQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSM-DHNFDMMNNACRALTYMMEALP 201 (249)
Q Consensus 123 ~~rl~~Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~-e~n~dLQ~eAArALTNIasgtp 201 (249)
...+..|++++.. +..--+.++--=|-++-| .--||.|.+.|.. .++|.+--|||-||-.|++ +
T Consensus 186 EeaI~al~~~l~~-~SalfrhEvAfVfGQl~s------------~~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~--e 250 (289)
T KOG0567|consen 186 EEAINALIDGLAD-DSALFRHEVAFVFGQLQS------------PAAIPSLIKVLLDETEHPMVRHEAAEALGAIAD--E 250 (289)
T ss_pred HHHHHHHHHhccc-chHHHHHHHHHHHhhccc------------hhhhHHHHHHHHhhhcchHHHHHHHHHHHhhcC--H
Confidence 3566777777765 233334444433333322 2358889988865 3579999999999999887 4
Q ss_pred hhHHHHhccHHHHHHHhhcCCChhHHHHHHHHHHHhhhhchhH
Q psy1198 202 RSSAVVLDAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRHSKA 244 (249)
Q Consensus 202 ~qT~~VVGAVPiL~~kLLsi~yiDVAEQALwALenISgD~p~a 244 (249)
.+|++|.+ ++.-+..=|+|-|.-+|+.+-.+..++
T Consensus 251 -------~~~~vL~e-~~~D~~~vv~esc~valdm~eyens~~ 285 (289)
T KOG0567|consen 251 -------DCVEVLKE-YLGDEERVVRESCEVALDMLEYENSKE 285 (289)
T ss_pred -------HHHHHHHH-HcCCcHHHHHHHHHHHHHHHHHhcccc
Confidence 34567775 666677779999999999987776543
No 89
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=75.44 E-value=18 Score=33.12 Aligned_cols=105 Identities=14% Similarity=0.111 Sum_probs=73.0
Q ss_pred HHHHHHH-HHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCch
Q psy1198 124 TKAQQLL-VSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEALPR 202 (249)
Q Consensus 124 ~rl~~Ll-~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~ 202 (249)
.-++.|| -.+++ .|+..+..|+.-|.-.=..+.+ ....+++.|.++++.+ +..++..|.++|+.|+-....
T Consensus 26 ~ll~~lI~P~v~~-~~~~vR~~al~cLGl~~Lld~~------~a~~~l~l~~~~~~~~-~~~v~~~al~~l~Dll~~~g~ 97 (298)
T PF12719_consen 26 SLLDSLILPAVQS-SDPAVRELALKCLGLCCLLDKE------LAKEHLPLFLQALQKD-DEEVKITALKALFDLLLTHGI 97 (298)
T ss_pred HHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHhChH------HHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHHHcCc
Confidence 3356665 57888 5888888888777543333221 2357889999999654 799999999999999876543
Q ss_pred hHHHH---------h-ccHHHHHHHhhcCCChhHHHHHHHHHHHh
Q psy1198 203 SSAVV---------L-DAVPTFLEKLQVIQCMDVAEQSLTALEML 237 (249)
Q Consensus 203 qT~~V---------V-GAVPiL~~kLLsi~yiDVAEQALwALenI 237 (249)
..-.. . ..+.+|. +.+..++.++...+++.|-|+
T Consensus 98 ~~~~~~~~~~~~~~~~~l~~~l~-~~l~~~~~~~~~~a~EGl~KL 141 (298)
T PF12719_consen 98 DIFDSESDNDESVDSKSLLKILT-KFLDSENPELQAIAVEGLCKL 141 (298)
T ss_pred hhccchhccCccchHhHHHHHHH-HHHhcCCHHHHHHHHHHHHHH
Confidence 21111 1 3455666 466777889999999999883
No 90
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=75.13 E-value=4.9 Score=33.82 Aligned_cols=110 Identities=15% Similarity=0.106 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCC--CCCccChHHHHHHhcC-CCCCccHHHHHHHHHHHHHhc
Q psy1198 123 ATKAQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLT--GFPVKQVVPALITLLS-MDHNFDMMNNACRALTYMMEA 199 (249)
Q Consensus 123 ~~rl~~Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~--~fp~~glVP~LV~iLs-~e~n~dLQ~eAArALTNIasg 199 (249)
..++.+.++.+-...+.+..+.++.-+..++... |.+- -|-.+++++.++..++ ..++..+|..++.+|..-|.
T Consensus 41 ~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~--~dv~~~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~- 117 (157)
T PF11701_consen 41 KEKISDFIESLLDEGEMDSLIIAFSALTALFPGP--PDVGSELFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACI- 117 (157)
T ss_dssp HHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTT--HHHHHHHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHccccchhHHHHHHHHHHHhCCC--HHHHHHHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHc-
Confidence 3455555655433223345566666666666552 1111 2667899999999998 34578889999998865544
Q ss_pred CchhHHHHh--ccHHHHHHHhhcCCChh-HHHHHHHHHHH
Q psy1198 200 LPRSSAVVL--DAVPTFLEKLQVIQCMD-VAEQSLTALEM 236 (249)
Q Consensus 200 tp~qT~~VV--GAVPiL~~kLLsi~yiD-VAEQALwALen 236 (249)
-+..+..| ..++.|-+.+...++.. ++.-|+=.|-|
T Consensus 118 -d~~~r~~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~K 156 (157)
T PF11701_consen 118 -DKSCRTFISKNYVSWLKELYKNSKDDSEIRVLAAVGLCK 156 (157)
T ss_dssp -SHHHHHCCHHHCHHHHHHHTTTCC-HH-CHHHHHHHHHH
T ss_pred -cHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHhc
Confidence 44555555 99999997443444433 56666665544
No 91
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=74.58 E-value=20 Score=34.43 Aligned_cols=98 Identities=21% Similarity=0.329 Sum_probs=75.1
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchh----HHHHh--------
Q psy1198 141 QQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEALPRS----SAVVL-------- 208 (249)
Q Consensus 141 ~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~q----T~~VV-------- 208 (249)
..++.+.-+.|-|.|-+.|- ...++..|+++|++ +++.-.||+++.-|+.-.++. .+++|
T Consensus 249 ~~~~~~~Wi~KaLv~R~~~~-----~~~~~~~L~~lL~~---~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~ 320 (415)
T PF12460_consen 249 QALEILIWITKALVMRGHPL-----ATELLDKLLELLSS---PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRF 320 (415)
T ss_pred HHHHHHHHHHHHHHHcCCch-----HHHHHHHHHHHhCC---hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHH
Confidence 34566666778777754433 34789999999975 788999999999999875544 33444
Q ss_pred --ccHHHHHHHhhcCCChhHHHHHHHHHHHhhhhchhHHhh
Q psy1198 209 --DAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRHSKAILQ 247 (249)
Q Consensus 209 --GAVPiL~~kLLsi~yiDVAEQALwALenISgD~p~aIL~ 247 (249)
-.+|.|+++..+.+ .+..+..+.||-+|-+--|+.|+.
T Consensus 321 F~~~~p~L~~~~~~~~-~~~k~~yL~ALs~ll~~vP~~vl~ 360 (415)
T PF12460_consen 321 FTQVLPKLLEGFKEAD-DEIKSNYLTALSHLLKNVPKSVLL 360 (415)
T ss_pred HHHHHHHHHHHHhhcC-hhhHHHHHHHHHHHHhhCCHHHHH
Confidence 78999998776644 348999999999999999999875
No 92
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=74.49 E-value=31 Score=33.29 Aligned_cols=93 Identities=18% Similarity=0.220 Sum_probs=66.7
Q ss_pred CHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchhHHHHh--ccHHHHH
Q psy1198 138 DEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEALPRSSAVVL--DAVPTFL 215 (249)
Q Consensus 138 D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~qT~~VV--GAVPiL~ 215 (249)
...+..+|+.-.|+++...+. ...|| .++|..+|.+.++++ ..+...|--.|..|+=..| ..|+ |.+.+|.
T Consensus 81 ~~~ER~QALkliR~~l~~~~~--~~~~~-~~vvralvaiae~~~-D~lr~~cletL~El~l~~P---~lv~~~gG~~~L~ 153 (371)
T PF14664_consen 81 NDVEREQALKLIRAFLEIKKG--PKEIP-RGVVRALVAIAEHED-DRLRRICLETLCELALLNP---ELVAECGGIRVLL 153 (371)
T ss_pred ChHHHHHHHHHHHHHHHhcCC--cccCC-HHHHHHHHHHHhCCc-hHHHHHHHHHHHHHHhhCH---HHHHHcCCHHHHH
Confidence 345567899999999988433 23455 799999999998743 4455555555555555555 4455 9999999
Q ss_pred HHhhcCCChhHHHHHHHHHHHhh
Q psy1198 216 EKLQVIQCMDVAEQSLTALEMLS 238 (249)
Q Consensus 216 ~kLLsi~yiDVAEQALwALenIS 238 (249)
+-|.+ ...+++|-+++++=.+-
T Consensus 154 ~~l~d-~~~~~~~~l~~~lL~lL 175 (371)
T PF14664_consen 154 RALID-GSFSISESLLDTLLYLL 175 (371)
T ss_pred HHHHh-ccHhHHHHHHHHHHHHh
Confidence 98888 44559999999886653
No 93
>PTZ00429 beta-adaptin; Provisional
Probab=74.14 E-value=52 Score=34.91 Aligned_cols=70 Identities=14% Similarity=0.119 Sum_probs=38.7
Q ss_pred chhHHHHhhCCCCCCCCCCccCccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHH
Q psy1198 95 SLLSGVASSSSGPSHAPGAALDSESEDTATKAQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALI 174 (249)
Q Consensus 95 ~r~q~Llkrr~l~~~~~gs~~~~~~s~~~~rl~~Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV 174 (249)
.|+|+=+++-+-+..+|.. ....+..+|-+.|++. |.....++++.+=-+..+. .++..+.|..|
T Consensus 10 ~~~~~~~~~~~~~~~~f~~-------~~kge~~ELr~~L~s~-~~~~kk~alKkvIa~mt~G-------~DvS~LF~dVv 74 (746)
T PTZ00429 10 ERIQRKLEETKTGSKYFAQ-------TRRGEGAELQNDLNGT-DSYRKKAAVKRIIANMTMG-------RDVSYLFVDVV 74 (746)
T ss_pred HHHHHHhhcCCCccccccc-------cccchHHHHHHHHHCC-CHHHHHHHHHHHHHHHHCC-------CCchHHHHHHH
Confidence 3555556555554455431 1223567777778874 7777777766655444443 22344555555
Q ss_pred HhcCC
Q psy1198 175 TLLSM 179 (249)
Q Consensus 175 ~iLs~ 179 (249)
++++.
T Consensus 75 k~~~S 79 (746)
T PTZ00429 75 KLAPS 79 (746)
T ss_pred HHhCC
Confidence 55543
No 94
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=73.93 E-value=6.4 Score=38.69 Aligned_cols=79 Identities=20% Similarity=0.203 Sum_probs=62.7
Q ss_pred CCCCCCcc--ChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchhHHHHh--ccHHHHHHHhhcCCChhHHHHHHHHHH
Q psy1198 160 TLTGFPVK--QVVPALITLLSMDHNFDMMNNACRALTYMMEALPRSSAVVL--DAVPTFLEKLQVIQCMDVAEQSLTALE 235 (249)
Q Consensus 160 ~I~~fp~~--glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~qT~~VV--GAVPiL~~kLLsi~yiDVAEQALwALe 235 (249)
+++.+..+ .++..|.++|+.....-.--.||.=|+.+.+..|+.-.++. |+=..+.+ |++.++.||.=.||+|+.
T Consensus 346 N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~~vl~Kyg~k~~im~-L~nh~d~~VkfeAl~a~q 424 (432)
T COG5231 346 NLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEINAVLSKYGVKEIIMN-LINHDDDDVKFEALQALQ 424 (432)
T ss_pred hHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHHHHHHHhhhHHHHHH-HhcCCCchhhHHHHHHHH
Confidence 34445444 67899999998643222445799999999999999998888 88888887 889999999999999987
Q ss_pred Hhhh
Q psy1198 236 MLSR 239 (249)
Q Consensus 236 nISg 239 (249)
-|.+
T Consensus 425 ~~i~ 428 (432)
T COG5231 425 TCIS 428 (432)
T ss_pred HHHh
Confidence 7654
No 95
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=73.72 E-value=38 Score=27.58 Aligned_cols=93 Identities=12% Similarity=0.119 Sum_probs=64.5
Q ss_pred HHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchhHHHHh---ccHHHHHHHhh
Q psy1198 143 LQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEALPRSSAVVL---DAVPTFLEKLQ 219 (249)
Q Consensus 143 LeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~qT~~VV---GAVPiL~~kLL 219 (249)
.....++|+++.... ......+..|-+-|+.. ||.+|+.|-..|=-++.-.....+.-| .-+--|+. |.
T Consensus 18 ~~~il~icd~I~~~~------~~~k~a~raL~krl~~~-n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~-l~ 89 (133)
T cd03561 18 WALNLELCDLINLKP------NGPKEAARAIRKKIKYG-NPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVK-IA 89 (133)
T ss_pred HHHHHHHHHHHhCCC------CCHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHH-Hh
Confidence 567788999886541 22356778888888764 799999998777777776665555555 33444554 44
Q ss_pred c---CCChhHHHHHHHHHHHhhhhchh
Q psy1198 220 V---IQCMDVAEQSLTALEMLSRRHSK 243 (249)
Q Consensus 220 s---i~yiDVAEQALwALenISgD~p~ 243 (249)
. ....+|.+.++..|.+-+...+.
T Consensus 90 ~~~~~~~~~Vk~kil~ll~~W~~~f~~ 116 (133)
T cd03561 90 KNSPKYDPKVREKALELILAWSESFGG 116 (133)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 3 35788999999999887766553
No 96
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=73.55 E-value=31 Score=29.05 Aligned_cols=108 Identities=11% Similarity=0.085 Sum_probs=71.1
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchhHHH
Q psy1198 127 QQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEALPRSSAV 206 (249)
Q Consensus 127 ~~Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~qT~~ 206 (249)
+++|+...+..-+..-.....++|+++....+ .....+..|.+=|.+ .||.+|+.|-..|=.++.-.....+.
T Consensus 2 e~~iekATse~l~~~dw~~il~icD~I~~~~~------~~k~a~ral~KRl~~-~n~~v~l~AL~LLe~~vkNCG~~fh~ 74 (144)
T cd03568 2 DDLVEKATDEKLTSENWGLILDVCDKVKSDEN------GAKDCLKAIMKRLNH-KDPNVQLRALTLLDACAENCGKRFHQ 74 (144)
T ss_pred hHHHHHHcCccCCCcCHHHHHHHHHHHhcCCc------cHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHHCCHHHHH
Confidence 44555554422223345667888888865321 235677777777765 47999999888887777776666554
Q ss_pred Hh---ccHHHHHHHhhcC-CChhHHHHHHHHHHHhhhhch
Q psy1198 207 VL---DAVPTFLEKLQVI-QCMDVAEQSLTALEMLSRRHS 242 (249)
Q Consensus 207 VV---GAVPiL~~kLLsi-~yiDVAEQALwALenISgD~p 242 (249)
-| .-+-.|+. |.+- .+..|.+.++..+..-+...+
T Consensus 75 evask~Fl~eL~k-l~~~~~~~~Vk~kil~li~~W~~~f~ 113 (144)
T cd03568 75 EVASRDFTQELKK-LINDRVHPTVKEKLREVVKQWADEFK 113 (144)
T ss_pred HHhhHHHHHHHHH-HhcccCCHHHHHHHHHHHHHHHHHhC
Confidence 44 55556664 4443 689999999998888776554
No 97
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=72.96 E-value=9.2 Score=37.87 Aligned_cols=75 Identities=16% Similarity=0.152 Sum_probs=50.7
Q ss_pred CCCccChHHHHHHhcC---CCCCccHHHHHHHHHHHHHhcCchhHHHHhccHHHHHHHhhcCC---ChhHHHHHHHHHHH
Q psy1198 163 GFPVKQVVPALITLLS---MDHNFDMMNNACRALTYMMEALPRSSAVVLDAVPTFLEKLQVIQ---CMDVAEQSLTALEM 236 (249)
Q Consensus 163 ~fp~~glVP~LV~iLs---~e~n~dLQ~eAArALTNIasgtp~qT~~VVGAVPiL~~kLLsi~---yiDVAEQALwALen 236 (249)
..+...+++.|.+.|. ...+.+-.+.+-+||-|+- .| ..+|.|.. ++... ..+++=+|||||.+
T Consensus 481 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g--~~-------~~i~~l~~-~i~~~~~~~~~~R~~Ai~Alr~ 550 (618)
T PF01347_consen 481 RCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLG--HP-------ESIPVLLP-YIEGKEEVPHFIRVAAIQALRR 550 (618)
T ss_dssp SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT---G-------GGHHHHHT-TSTTSS-S-HHHHHHHHHTTTT
T ss_pred hhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccC--Cc-------hhhHHHHh-HhhhccccchHHHHHHHHHHHH
Confidence 3455788888888887 2345677889999999995 35 34555553 33333 57788899999999
Q ss_pred hhhhchhHHhh
Q psy1198 237 LSRRHSKAILQ 247 (249)
Q Consensus 237 ISgD~p~aIL~ 247 (249)
++..+|+.+.+
T Consensus 551 ~~~~~~~~v~~ 561 (618)
T PF01347_consen 551 LAKHCPEKVRE 561 (618)
T ss_dssp GGGT-HHHHHH
T ss_pred HhhcCcHHHHH
Confidence 99999977644
No 98
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=72.86 E-value=14 Score=30.72 Aligned_cols=80 Identities=15% Similarity=0.219 Sum_probs=57.3
Q ss_pred CCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchhHHHHh-ccHHHHHHHhhcCCC--hhHHHHHHHHHHHhhhh
Q psy1198 164 FPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEALPRSSAVVL-DAVPTFLEKLQVIQC--MDVAEQSLTALEMLSRR 240 (249)
Q Consensus 164 fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~qT~~VV-GAVPiL~~kLLsi~y--iDVAEQALwALenISgD 240 (249)
...+.+.|.|.+.+..++ +.+-..++|.++++..-.-..-..=+ =-++.++.++++++. ..-.|-+|++|.+|.+|
T Consensus 69 ~lk~~l~~~Ll~~~~~~~-~~i~~~slri~~~l~~~~~~~Lk~ele~~l~~i~~~il~~~~~~~~~k~~~Le~l~~l~~~ 147 (168)
T PF12783_consen 69 LLKDDLCPALLKNLSSSD-FPIFSRSLRIFLTLLSRFRSHLKLELEVFLSHIILRILESDNSSLWQKELALEILRELCKD 147 (168)
T ss_pred HHHHHHHHHHHHHHhhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHhC
Confidence 335678888888887765 89988999999999976654443333 335666665676554 46788899999999974
Q ss_pred chhHH
Q psy1198 241 HSKAI 245 (249)
Q Consensus 241 ~p~aI 245 (249)
|.-+
T Consensus 148 -p~~l 151 (168)
T PF12783_consen 148 -PQFL 151 (168)
T ss_pred -hhHH
Confidence 4433
No 99
>PF10835 DUF2573: Protein of unknown function (DUF2573); InterPro: IPR020393 This entry contains proteins with no known function.
Probab=72.42 E-value=10 Score=29.91 Aligned_cols=61 Identities=15% Similarity=0.092 Sum_probs=49.0
Q ss_pred cChHHHHHHhcCCCCCccH-HHHHHHHHHHHHhcCchhHHHHhccHHHHHHHhhcCCChhHHHHHHHHHHHhh
Q psy1198 167 KQVVPALITLLSMDHNFDM-MNNACRALTYMMEALPRSSAVVLDAVPTFLEKLQVIQCMDVAEQSLTALEMLS 238 (249)
Q Consensus 167 ~glVP~LV~iLs~e~n~dL-Q~eAArALTNIasgtp~qT~~VVGAVPiL~~kLLsi~yiDVAEQALwALenIS 238 (249)
+++|..+.++|-.+.+|++ ...=.||||+-+. -+.|.|.. --+..|+|-.|+....++.|=
T Consensus 9 dgLveKytELL~Ge~~~e~~EkVk~W~lYshia----------KsMPpL~k-HWN~~~PeaK~~ik~li~~Ik 70 (82)
T PF10835_consen 9 DGLVEKYTELLLGETSPEMKEKVKQWALYSHIA----------KSMPPLAK-HWNGTYPEAKEEIKELIEEIK 70 (82)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH----------HhCcHHHH-hhcccCchHHHHHHHHHHHHH
Confidence 5888999999988888887 4567899997543 56789996 556679999999998888874
No 100
>KOG2023|consensus
Probab=71.93 E-value=19 Score=38.48 Aligned_cols=114 Identities=17% Similarity=0.234 Sum_probs=76.1
Q ss_pred HHHHHHHHHHhcCCCHHH---HHHHHHHHHH----HhhcCCCCCCCCCCccChHHHHHHhcCCCCCccHHHHHHHHHHHH
Q psy1198 124 TKAQQLLVSLQAIGDEDQ---QLQAVVEMCQ----MLVMGNEDTLTGFPVKQVVPALITLLSMDHNFDMMNNACRALTYM 196 (249)
Q Consensus 124 ~rl~~Ll~~L~S~~D~~~---QLeAL~eLre----lLSmsnep~I~~fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNI 196 (249)
+-++++.+-|.+ +|... .+-||+.+|| .|-.+ - . .=|.+-++|+|++|.+++ +|.+.-+|.-|+.-+
T Consensus 128 elLp~L~~~L~s-~d~n~~EgA~~AL~KIcEDsa~~lds~--~-~-~rpl~~mipkfl~f~~h~-spkiRs~A~~cvNq~ 201 (885)
T KOG2023|consen 128 ELLPQLCELLDS-PDYNTCEGAFGALQKICEDSAQFLDSD--V-L-TRPLNIMIPKFLQFFKHP-SPKIRSHAVGCVNQF 201 (885)
T ss_pred hHHHHHHHHhcC-CcccccchhHHHHHHHHhhhHHHHhhh--c-c-cCchHHhHHHHHHHHhCC-ChhHHHHHHhhhhhe
Confidence 344555555666 46443 5788888886 22221 1 1 234467899999999876 799999999998766
Q ss_pred HhcCchhHHHHhccHHHHHHHh---hcCCChhHHHHHHHHHHHhhhhchhHHh
Q psy1198 197 MEALPRSSAVVLDAVPTFLEKL---QVIQCMDVAEQSLTALEMLSRRHSKAIL 246 (249)
Q Consensus 197 asgtp~qT~~VVGAVPiL~~kL---Lsi~yiDVAEQALwALenISgD~p~aIL 246 (249)
.= -+++.+.-.|-.|++-| .+-+..+|+-|...+|-.+-.-.|..++
T Consensus 202 i~---~~~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl~ 251 (885)
T KOG2023|consen 202 II---IQTQALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKLV 251 (885)
T ss_pred ee---cCcHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhcc
Confidence 53 45555554555555544 4557899999999998877666666553
No 101
>PF05642 Sporozoite_P67: Sporozoite P67 surface antigen; InterPro: IPR008845 This family consists of several Theileria P67 surface antigens. A stage specific surface antigen of Theileria parva, p67, is the basis for the development of an anti-sporozoite vaccine for the control of East Coast fever (ECF) in Bos taurus. The antigen has been shown to contain five distinct linear peptide sequences recognised by sporozoite-neutralising murine monoclonal antibodies [].
Probab=71.75 E-value=13 Score=38.86 Aligned_cols=8 Identities=0% Similarity=0.268 Sum_probs=3.3
Q ss_pred HHHHhcCc
Q psy1198 194 TYMMEALP 201 (249)
Q Consensus 194 TNIasgtp 201 (249)
.|+.-++.
T Consensus 424 anv~kgfn 431 (727)
T PF05642_consen 424 ANVLKGFN 431 (727)
T ss_pred HHHHhccc
Confidence 34444443
No 102
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=71.38 E-value=20 Score=34.44 Aligned_cols=75 Identities=27% Similarity=0.396 Sum_probs=57.3
Q ss_pred ChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchhHHHHh----ccHHHHHHHhhcCCChhHHHHHHHHHHHhhhhchh
Q psy1198 168 QVVPALITLLSMDHNFDMMNNACRALTYMMEALPRSSAVVL----DAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRHSK 243 (249)
Q Consensus 168 glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~qT~~VV----GAVPiL~~kLLsi~yiDVAEQALwALenISgD~p~ 243 (249)
.++|.|++..+..+ .+..-.---||.+|....|.+. +. ..+|.|++-| +.++.+|..-+|.+|..|..|.|.
T Consensus 323 ~~~p~L~~~~~~~~-~~~k~~yL~ALs~ll~~vP~~v--l~~~l~~LlPLLlqsL-~~~~~~v~~s~L~tL~~~l~~~~~ 398 (415)
T PF12460_consen 323 QVLPKLLEGFKEAD-DEIKSNYLTALSHLLKNVPKSV--LLPELPTLLPLLLQSL-SLPDADVLLSSLETLKMILEEAPE 398 (415)
T ss_pred HHHHHHHHHHhhcC-hhhHHHHHHHHHHHHhhCCHHH--HHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHHHcCHH
Confidence 67888888776533 2244445568999999999543 33 7799999844 778899999999999999999977
Q ss_pred HHh
Q psy1198 244 AIL 246 (249)
Q Consensus 244 aIL 246 (249)
.+-
T Consensus 399 ~i~ 401 (415)
T PF12460_consen 399 LIS 401 (415)
T ss_pred HHH
Confidence 653
No 103
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=71.36 E-value=46 Score=27.94 Aligned_cols=109 Identities=10% Similarity=0.051 Sum_probs=72.0
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchhHH
Q psy1198 126 AQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEALPRSSA 205 (249)
Q Consensus 126 l~~Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~qT~ 205 (249)
++++|+...+..-...-.....++|+++... +. .....+..|.+-|++ .||.+|+.|-..|=.++.---...+
T Consensus 2 ~~~~iekAT~~~l~~~dw~~ileicD~In~~--~~----~~k~a~rai~krl~~-~n~~v~l~AL~LLe~~vkNCG~~fh 74 (139)
T cd03567 2 LEAWLNKATNPSNREEDWEAIQAFCEQINKE--PE----GPQLAVRLLAHKIQS-PQEKEALQALTVLEACMKNCGERFH 74 (139)
T ss_pred HHHHHHHHcCccCCCCCHHHHHHHHHHHHcC--Cc----cHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHHcCHHHH
Confidence 4566665544222233466788999988642 22 124567777777764 4689999998888888876666655
Q ss_pred HHh---ccHHHHHHHhhcC------CChhHHHHHHHHHHHhhhhch
Q psy1198 206 VVL---DAVPTFLEKLQVI------QCMDVAEQSLTALEMLSRRHS 242 (249)
Q Consensus 206 ~VV---GAVPiL~~kLLsi------~yiDVAEQALwALenISgD~p 242 (249)
.-| .-+.-|++ |.+- .+..|.+.+|..|..-+...+
T Consensus 75 ~evas~~Fl~el~k-l~~~k~~~~~~~~~Vk~kil~li~~W~~~f~ 119 (139)
T cd03567 75 SEVGKFRFLNELIK-LVSPKYLGSRTSEKVKTKIIELLYSWTLELP 119 (139)
T ss_pred HHHHhHHHHHHHHH-HhccccCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 555 55667774 5542 468999999988887665543
No 104
>KOG2122|consensus
Probab=70.53 E-value=7.3 Score=44.64 Aligned_cols=129 Identities=25% Similarity=0.291 Sum_probs=88.9
Q ss_pred cchhHHHHhhC-CCCCCC----------CCCc--c-CccchhhHHHHHHHHHH----HhcCCCHHHHHHHH-HHHHHHhh
Q psy1198 94 TSLLSGVASSS-SGPSHA----------PGAA--L-DSESEDTATKAQQLLVS----LQAIGDEDQQLQAV-VEMCQMLV 154 (249)
Q Consensus 94 ~~r~q~Llkrr-~l~~~~----------~gs~--~-~~~~s~~~~rl~~Ll~~----L~S~~D~~~QLeAL-~eLrelLS 154 (249)
+.-|.++|-.+ ||.-|- +|++ | ..+++....+.-+||+. |+. .-++.|+ ...|++|-
T Consensus 452 EsTLKavLSALWNLSAHcteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRN----VSS~IAt~E~yRQILR 527 (2195)
T KOG2122|consen 452 ESTLKAVLSALWNLSAHCTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRN----VSSLIATCEDYRQILR 527 (2195)
T ss_pred cchHHHHHHHHhhhhhcccccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHH----HHhHhhccchHHHHHH
Confidence 34466666666 665443 2332 1 23344444555556543 222 1234444 33455554
Q ss_pred cCCCCCCCCCCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchhHHHHh--ccHHHHHHHhhcCCChhHHHHHHH
Q psy1198 155 MGNEDTLTGFPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEALPRSSAVVL--DAVPTFLEKLQVIQCMDVAEQSLT 232 (249)
Q Consensus 155 msnep~I~~fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~qT~~VV--GAVPiL~~kLLsi~yiDVAEQALw 232 (249)
. ...+..|++.|+. +...+--.+|=+|.|+.--.|+--..+. ||||.|.+ |+.+.+-+++|-+..
T Consensus 528 ~-----------~NCLq~LLQ~LKS-~SLTiVSNaCGTLWNLSAR~p~DQq~LwD~gAv~mLrn-LIhSKhkMIa~GSaa 594 (2195)
T KOG2122|consen 528 R-----------HNCLQTLLQHLKS-HSLTIVSNACGTLWNLSARSPEDQQMLWDDGAVPMLRN-LIHSKHKMIAMGSAA 594 (2195)
T ss_pred H-----------hhHHHHHHHHhhh-cceEEeecchhhhhhhhcCCHHHHHHHHhcccHHHHHH-HHhhhhhhhhhhHHH
Confidence 4 3478899999986 4688888999999999999999888887 99999997 888899999999999
Q ss_pred HHHHhhh
Q psy1198 233 ALEMLSR 239 (249)
Q Consensus 233 ALenISg 239 (249)
||-|+=.
T Consensus 595 ALrNLln 601 (2195)
T KOG2122|consen 595 ALRNLLN 601 (2195)
T ss_pred HHHHHhc
Confidence 9999754
No 105
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=70.18 E-value=22 Score=28.20 Aligned_cols=87 Identities=13% Similarity=0.241 Sum_probs=58.3
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCCC-CCccHHHHHHHHHHHHHhcCch
Q psy1198 124 TKAQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMD-HNFDMMNNACRALTYMMEALPR 202 (249)
Q Consensus 124 ~rl~~Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~e-~n~dLQ~eAArALTNIasgtp~ 202 (249)
.++...+..++...+...+..+++.+.+++-+..+ . ...+.|.+..+|+.- +.++++.+|++|...+..-+++
T Consensus 14 ~~f~~~l~d~~~~~~~~ek~~~l~si~~lI~~~~~-~-----i~~~~pQI~a~L~sal~~~~l~~~al~~W~~fi~~L~~ 87 (107)
T PF08064_consen 14 TRFSDVLNDLRGKKPIPEKKRALRSIEELIKLGGS-H-----ISSARPQIMACLQSALEIPELREEALSCWNCFIKTLDE 87 (107)
T ss_pred HHHHHHHhccccCCCHHHHHHHHHHHHHHHHHhHH-H-----HHHHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHHCCH
Confidence 45566655554445667777888888888776432 2 367889899888743 3569999999999888887776
Q ss_pred hH-HHHh-ccHHHHHH
Q psy1198 203 SS-AVVL-DAVPTFLE 216 (249)
Q Consensus 203 qT-~~VV-GAVPiL~~ 216 (249)
.- ..++ -.+-.|++
T Consensus 88 ~~l~~ll~~~~~~l~~ 103 (107)
T PF08064_consen 88 EDLGPLLDQIFAILLP 103 (107)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 43 3333 44444443
No 106
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=70.17 E-value=7.4 Score=40.48 Aligned_cols=113 Identities=19% Similarity=0.249 Sum_probs=75.3
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCC-CCCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchh-
Q psy1198 126 AQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLT-GFPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEALPRS- 203 (249)
Q Consensus 126 l~~Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~-~fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~q- 203 (249)
+.+++-.+-|++|......++...|+.... =.|+. .|...+++..|++++... +..||-..-|.|.+++=+--..
T Consensus 432 I~elLi~~Ls~Peimi~~~~t~~icn~vv~--fsnL~~~fL~~~iIdvl~~~v~sK-DdaLqans~wvlrHlmyncq~~e 508 (743)
T COG5369 432 IVELLIDALSNPEIMIEFPDTIDICNKVVP--FSNLGAGFLEKSIIDVLVNLVMSK-DDALQANSEWVLRHLMYNCQKNE 508 (743)
T ss_pred hHHHHHHHhcCccceeeccchhhhhheeee--ccchHHHHHHhhHHHHHHHHhhcc-hhhhhhcchhhhhhhhhcCcchh
Confidence 344433333423333344566777765433 12333 588889999999988754 3488999999999998765443
Q ss_pred -HHHHh-ccHHHHHHHhhcCCChhHHHHHHHHHHHhhhhch
Q psy1198 204 -SAVVL-DAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRHS 242 (249)
Q Consensus 204 -T~~VV-GAVPiL~~kLLsi~yiDVAEQALwALenISgD~p 242 (249)
-..+. -.+..+++ +.+-++.-|.||+++.|.|.-=|..
T Consensus 509 kf~~Lakig~~kvl~-~~NDpc~~vq~q~lQilrNftc~~~ 548 (743)
T COG5369 509 KFKFLAKIGVEKVLS-YTNDPCFKVQHQVLQILRNFTCDTS 548 (743)
T ss_pred hhhhHHhcCHHHHHH-HhcCcccccHHHHHHHHHhcccccc
Confidence 33344 55666676 6677899999999999999865443
No 107
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=69.26 E-value=81 Score=29.01 Aligned_cols=105 Identities=19% Similarity=0.210 Sum_probs=64.4
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCC---------CCCc-cH-HHHHHHHHHHH
Q psy1198 128 QLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSM---------DHNF-DM-MNNACRALTYM 196 (249)
Q Consensus 128 ~Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~---------e~n~-dL-Q~eAArALTNI 196 (249)
.+++.+..+-||--.|.+..-++.++.. |+...++..+.+++.. .++| .+ --+=.++|.+-
T Consensus 127 ~~i~~~~gEkDPRnLl~~F~l~~~i~~~--------~~~~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~c 198 (262)
T PF14500_consen 127 GFIQLIDGEKDPRNLLLSFKLLKVILQE--------FDISEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNC 198 (262)
T ss_pred HHHHHhccCCCHHHHHHHHHHHHHHHHh--------cccchhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHH
Confidence 3344444434565555555554444433 4446677777777764 1222 11 12224567777
Q ss_pred HhcCchhHHHHhccHHHHHHHhhcCCChhHHHHHHHHHHHhhhhchhH
Q psy1198 197 MEALPRSSAVVLDAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRHSKA 244 (249)
Q Consensus 197 asgtp~qT~~VVGAVPiL~~kLLsi~yiDVAEQALwALenISgD~p~a 244 (249)
+..+|.-.. -++|.|++||-+ +..++..++|++|-.....++.+
T Consensus 199 l~s~~~fa~---~~~p~LleKL~s-~~~~~K~D~L~tL~~c~~~y~~~ 242 (262)
T PF14500_consen 199 LSSTPLFAP---FAFPLLLEKLDS-TSPSVKLDSLQTLKACIENYGAD 242 (262)
T ss_pred hcCcHhhHH---HHHHHHHHHHcC-CCcHHHHHHHHHHHHHHHHCCHH
Confidence 776665544 789999999965 67789999999998866666554
No 108
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=68.92 E-value=32 Score=30.56 Aligned_cols=75 Identities=15% Similarity=0.065 Sum_probs=57.6
Q ss_pred CCCCCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhc-CchhHHHHh-ccHHHHHHHhhcCCChhHHHHHHHHHHHh
Q psy1198 161 LTGFPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEA-LPRSSAVVL-DAVPTFLEKLQVIQCMDVAEQSLTALEML 237 (249)
Q Consensus 161 I~~fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasg-tp~qT~~VV-GAVPiL~~kLLsi~yiDVAEQALwALenI 237 (249)
++.++.+-++|.|++=|...+ ....|.|-..++-|.+. -++..--|+ -.|+.|.+ =|+..+.+|-+-+|.+|-.+
T Consensus 31 ~e~Ldy~~~Lpif~dGL~Et~-~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~-AL~tr~~~V~~~~L~~Lq~L 107 (183)
T PF10274_consen 31 PEKLDYHHYLPIFFDGLRETE-HPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKR-ALNTRDPEVFCATLKALQQL 107 (183)
T ss_pred hhhcchhhHHHHHHhhhhccC-ccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHH-HHhCCCHHHHHHHHHHHHHH
Confidence 445777789999999997543 45679999999999998 554444445 66666665 44557899999999999998
No 109
>KOG4500|consensus
Probab=68.72 E-value=8.3 Score=39.30 Aligned_cols=59 Identities=12% Similarity=0.007 Sum_probs=44.4
Q ss_pred ccHHHHHHHHHHHHHhcCchh----HHH-Hh-ccHHHHHHHhhcCCChhHHHHHHHHHHHhhhhchh
Q psy1198 183 FDMMNNACRALTYMMEALPRS----SAV-VL-DAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRHSK 243 (249)
Q Consensus 183 ~dLQ~eAArALTNIasgtp~q----T~~-VV-GAVPiL~~kLLsi~yiDVAEQALwALenISgD~p~ 243 (249)
..+-.+++.|+..+. ..+-+ +.. |. +++..|.+ +.++++.+|-|||-.+|+||.-|+-.
T Consensus 56 ~tv~~~qssC~A~~s-k~ev~r~~F~~~~I~a~~le~Lrq-~psS~d~ev~~Q~~RaLgNiCydn~E 120 (604)
T KOG4500|consen 56 DTVYLFQSSCLADRS-KNEVERSLFRNYCIDAEALELLRQ-TPSSPDTEVHEQCFRALGNICYDNNE 120 (604)
T ss_pred chhhhhhHHHHHHHh-hhHHHHHHHHHHhhHHHHHHHHHh-CCCCCcccHHHHHHHHHhhhhccCch
Confidence 456678888888877 23322 222 43 88999997 88889999999999999999877643
No 110
>KOG0301|consensus
Probab=68.07 E-value=18 Score=38.22 Aligned_cols=30 Identities=20% Similarity=0.242 Sum_probs=23.8
Q ss_pred ChHHHHHHhcCCCCCccHHHHHHHHHHHHHhc
Q psy1198 168 QVVPALITLLSMDHNFDMMNNACRALTYMMEA 199 (249)
Q Consensus 168 glVP~LV~iLs~e~n~dLQ~eAArALTNIasg 199 (249)
.||-.|+..+. -.|..|+.++|||.|++..
T Consensus 589 ~~~~~li~~~~--~~~an~ll~vR~L~N~f~~ 618 (745)
T KOG0301|consen 589 NLVGTLIPILN--ADPANQLLVVRCLANLFSN 618 (745)
T ss_pred HHHHhhhcccc--cchhHHHHHHHHHHHhccC
Confidence 46667777665 3478899999999999876
No 111
>PF09431 DUF2013: Protein of unknown function (DUF2013); InterPro: IPR018556 This domain is found at the C terminus of some proteins, including Ldb17, NCK-interacting protein and uncharacterised proteins. Ldb17 is involved in the regulation of endocytosis in yeast []. NCK-interacting protein (also known as WASP-interacting SH3-domain protein) induces microspike formation in vivo. In vitro, stimulates N-WASP-induced ARP2/3 complex activation in the absence of CDC42. It may play an important role in the maintenance of sarcomere and/or in the assembly of myofibrils into sarcomeres. It is also implicated in regulation of actin polymerisation and cell adhesion [].
Probab=66.61 E-value=31 Score=29.33 Aligned_cols=71 Identities=18% Similarity=0.163 Sum_probs=55.2
Q ss_pred cChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchhHHHHh------ccHHHHHHHhhcC--CChhHHHHHHHHHHHhh
Q psy1198 167 KQVVPALITLLSMDHNFDMMNNACRALTYMMEALPRSSAVVL------DAVPTFLEKLQVI--QCMDVAEQSLTALEMLS 238 (249)
Q Consensus 167 ~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~qT~~VV------GAVPiL~~kLLsi--~yiDVAEQALwALenIS 238 (249)
..|...|+.+|.++++|.+|+..+..|+-|.+ ++ .|.... =-|-++++-|.+. +...++.+.|..|..|-
T Consensus 45 ~~F~e~Lil~lNR~~d~~~~iliLK~l~~iFt-~~-~t~~~FYtNDL~VLiDIiiReL~dl~~~~~~lR~~yL~vL~~ll 122 (140)
T PF09431_consen 45 KTFGEKLILLLNREEDPSVQILILKFLYDIFT-TS-STADLFYTNDLKVLIDIIIRELNDLPDEGDKLRHTYLRVLHPLL 122 (140)
T ss_pred hHHHHHHHHHHccCCcchHHHHHHHHHHHHhC-Cc-chhhhhhhccHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHH
Confidence 47899999999999999999999999999999 33 444454 2366777777777 55677888998888654
Q ss_pred h
Q psy1198 239 R 239 (249)
Q Consensus 239 g 239 (249)
+
T Consensus 123 ~ 123 (140)
T PF09431_consen 123 R 123 (140)
T ss_pred c
Confidence 3
No 112
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=66.48 E-value=18 Score=38.09 Aligned_cols=109 Identities=11% Similarity=0.067 Sum_probs=66.1
Q ss_pred HHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCC--CCCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchhHHHHh
Q psy1198 131 VSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLT--GFPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEALPRSSAVVL 208 (249)
Q Consensus 131 ~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~--~fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~qT~~VV 208 (249)
++|++ ++-...-.+...+--++ .+|.-+ .-.+...+|.+...+. +....+.-.+|||+.-|+|-.++...--
T Consensus 373 qni~~-~~w~nreaavmAfGSvm---~gp~~~~lT~~V~qalp~i~n~m~-D~~l~vk~ttAwc~g~iad~va~~i~p~- 446 (858)
T COG5215 373 QNIRS-ESWANREAAVMAFGSVM---HGPCEDCLTKIVPQALPGIENEMS-DSCLWVKSTTAWCFGAIADHVAMIISPC- 446 (858)
T ss_pred HhccC-chhhhHHHHHHHhhhhh---cCccHHHHHhhHHhhhHHHHHhcc-cceeehhhHHHHHHHHHHHHHHHhcCcc-
Confidence 35676 34433344556665443 233333 1234578888888776 4556677889999999998655432111
Q ss_pred ccHHHHHHHhh--cCCChhHHHHHHHHHHHhhhhchhHH
Q psy1198 209 DAVPTFLEKLQ--VIQCMDVAEQSLTALEMLSRRHSKAI 245 (249)
Q Consensus 209 GAVPiL~~kLL--si~yiDVAEQALwALenISgD~p~aI 245 (249)
+-+|..+++++ -.+++-++--|-|+.+|+.-.-+++.
T Consensus 447 ~Hl~~~vsa~liGl~D~p~~~~ncsw~~~nlv~h~a~a~ 485 (858)
T COG5215 447 GHLVLEVSASLIGLMDCPFRSINCSWRKENLVDHIAKAV 485 (858)
T ss_pred ccccHHHHHHHhhhhccchHHhhhHHHHHhHHHhhhhhh
Confidence 33333333333 12567788889999999887666654
No 113
>KOG3678|consensus
Probab=65.62 E-value=27 Score=36.21 Aligned_cols=114 Identities=16% Similarity=0.152 Sum_probs=78.1
Q ss_pred HHHHHHHHhcCCCHHH--HHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchh
Q psy1198 126 AQQLLVSLQAIGDEDQ--QLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEALPRS 203 (249)
Q Consensus 126 l~~Ll~~L~S~~D~~~--QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~q 203 (249)
+..++.-+++ .+-.. .+++-+-|-++|+-+|-+-+..+- -++| +.+-+..+.+|+|...+-.|-||+.-.-+.
T Consensus 182 lD~Llrmf~a-Pn~et~vRve~~rlLEq~~~aeN~d~va~~~-~~~I---l~lAK~~e~~e~aR~~~~il~~mFKHSeet 256 (832)
T KOG3678|consen 182 LDLLLRMFQA-PNLETSVRVEAARLLEQILVAENRDRVARIG-LGVI---LNLAKEREPVELARSVAGILEHMFKHSEET 256 (832)
T ss_pred HHHHHHHHhC-CchhHHHHHHHHHHHHHHHhhhhhhHHhhcc-chhh---hhhhhhcCcHHHHHHHHHHHHHHhhhhHHH
Confidence 4555655665 34333 578888899999988876655443 2332 232233457899999999999999988888
Q ss_pred HHHHh--ccHHHHHHHhhcCCChhHHHHHHHHHHHhhhhchhHH
Q psy1198 204 SAVVL--DAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRHSKAI 245 (249)
Q Consensus 204 T~~VV--GAVPiL~~kLLsi~yiDVAEQALwALenISgD~p~aI 245 (249)
+..+| |.+...+- -..-...|+-..|--||+||+--...++
T Consensus 257 ~~~Lvaa~~lD~vl~-~~rRt~P~lLRH~ALAL~N~~L~~~~a~ 299 (832)
T KOG3678|consen 257 CQRLVAAGGLDAVLY-WCRRTDPALLRHCALALGNCALHGGQAV 299 (832)
T ss_pred HHHHHhhcccchhee-ecccCCHHHHHHHHHHhhhhhhhchhHH
Confidence 88888 44443331 1122458999999999999987766554
No 114
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=65.48 E-value=30 Score=27.34 Aligned_cols=70 Identities=20% Similarity=0.290 Sum_probs=48.3
Q ss_pred ChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchhHHHHhccHHHHHHHhhcCCChhH-HHHHHHHHHHhhhhc
Q psy1198 168 QVVPALITLLSMDHNFDMMNNACRALTYMMEALPRSSAVVLDAVPTFLEKLQVIQCMDV-AEQSLTALEMLSRRH 241 (249)
Q Consensus 168 glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~qT~~VVGAVPiL~~kLLsi~yiDV-AEQALwALenISgD~ 241 (249)
-++|.+.+.|+....+|+|.-+==.++.++.-.|=...+ +..|++.+......+- ..|++-||-.|...+
T Consensus 6 ~lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~L~~~~----l~~l~~~i~~~~~~~~~~~~~l~~L~~l~q~q 76 (121)
T PF12397_consen 6 RLLPFLLKGLKSSSSPDLQAAAYMILSVLASKVPLSDEV----LNALMESILKNWTQETVQRQALICLIVLCQSQ 76 (121)
T ss_pred HHHHHHHHHHccCCcHHHHHHHHHHHHHHHhhcCCcHHH----HHHHHHHHHhccccchhHHHHHHHHHHHHHcc
Confidence 578888888886677899988888888888877755443 3334443433333333 488999999888666
No 115
>KOG2759|consensus
Probab=65.17 E-value=15 Score=36.77 Aligned_cols=70 Identities=21% Similarity=0.274 Sum_probs=62.4
Q ss_pred ChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchhHHHHh--ccHHHHHHHhhcCCChhHHHHHHHHHHHhh
Q psy1198 168 QVVPALITLLSMDHNFDMMNNACRALTYMMEALPRSSAVVL--DAVPTFLEKLQVIQCMDVAEQSLTALEMLS 238 (249)
Q Consensus 168 glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~qT~~VV--GAVPiL~~kLLsi~yiDVAEQALwALenIS 238 (249)
.++..|+++|+..++|-+--.||-=|+....-.|+--.+|. |+=..+-+ |++.++.+|.=.||.|+-++-
T Consensus 366 ellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~-Llnh~d~~Vry~ALlavQ~lm 437 (442)
T KOG2759|consen 366 ELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMN-LLNHEDPEVRYHALLAVQKLM 437 (442)
T ss_pred HHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHH-HhcCCCchHHHHHHHHHHHHH
Confidence 68999999999888888888999999999999999888777 88877775 999999999999999988764
No 116
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=64.82 E-value=19 Score=35.32 Aligned_cols=106 Identities=17% Similarity=0.131 Sum_probs=75.2
Q ss_pred CCHHHHHHHHHHHHHHhhcCCCCCCC-CCCccChHHHHHHhcCCC----CCccHHHHHHHHHHHHHhcCchhHHHHh---
Q psy1198 137 GDEDQQLQAVVEMCQMLVMGNEDTLT-GFPVKQVVPALITLLSMD----HNFDMMNNACRALTYMMEALPRSSAVVL--- 208 (249)
Q Consensus 137 ~D~~~QLeAL~eLrelLSmsnep~I~-~fp~~glVP~LV~iLs~e----~n~dLQ~eAArALTNIasgtp~qT~~VV--- 208 (249)
.|+....+||.-||++|-.. |... .|...++++.+++.|+.. .+.|++|...|.|--+....+..-..++
T Consensus 44 ~~~~v~~EALKCL~N~lf~s--~~aR~~~~~~~~~~~l~~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~ 121 (446)
T PF10165_consen 44 PDPDVSREALKCLCNALFLS--PSARQIFVDLGLAEKLCERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEH 121 (446)
T ss_pred CChHHHHHHHHHHHHHHhCC--HHHHHHHHHcCcHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHh
Confidence 57888899999999998763 3333 366669999999999875 2789999999999888877777766666
Q ss_pred ccHHHHHHHhhc-------C---------CChhHHHHHHHHHHHhhhhchhH
Q psy1198 209 DAVPTFLEKLQV-------I---------QCMDVAEQSLTALEMLSRRHSKA 244 (249)
Q Consensus 209 GAVPiL~~kLLs-------i---------~yiDVAEQALwALenISgD~p~a 244 (249)
+.+..|++.|.. . ...++.-.+|..|=||.-..++.
T Consensus 122 ~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKllFNit~~~~~~ 173 (446)
T PF10165_consen 122 HGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILKLLFNITLHYPKS 173 (446)
T ss_pred hhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHHHHHHhhhccCcc
Confidence 455555443321 1 14455666777777876666554
No 117
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=64.75 E-value=5.8 Score=42.46 Aligned_cols=55 Identities=18% Similarity=0.202 Sum_probs=36.7
Q ss_pred HhhcCCCCCCCCCCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchhHHHH
Q psy1198 152 MLVMGNEDTLTGFPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEALPRSSAVV 207 (249)
Q Consensus 152 lLSmsnep~I~~fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~qT~~V 207 (249)
++|++..-.+..++.+.++..|.++++.| +.++--++.+.|..+++|..+..-.+
T Consensus 166 IrSRCq~f~Fk~Ls~eeIv~~L~~Il~~E-gI~id~eAL~lIA~~A~GsmRdALsL 220 (830)
T PRK07003 166 VLSRCLQFNLKQMPAGHIVSHLERILGEE-RIAFEPQALRLLARAAQGSMRDALSL 220 (830)
T ss_pred hhhheEEEecCCcCHHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 34444444444567778888888888765 35555677888888888877665444
No 118
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=64.74 E-value=32 Score=31.18 Aligned_cols=142 Identities=17% Similarity=0.229 Sum_probs=78.1
Q ss_pred chhHHHHHhhhCCCCCCccceeccCCCCCchhhhh---hhccCC--ccccCCCcccCCCCCCCCcccccccccccccccc
Q psy1198 19 SGSAAAAAATSGGGQGGKAATLYGAPGGGKAATLY---AQSGMS--AGETQGGSVAGEEDKNAGAQGSTSTSGAASGTAS 93 (249)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (249)
.|...-=.+..||=..|.-.-+||.||.||.--.. ...-+. .|..++..+ -=-.++.=+
T Consensus 22 Tg~~~lD~~L~GGi~~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vv----------------yidTe~~f~ 85 (256)
T PF08423_consen 22 TGCKSLDELLGGGIPTGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVV----------------YIDTEGTFS 85 (256)
T ss_dssp -SSHHHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEE----------------EEESSSSS-
T ss_pred CCCHHHHHhhCCCCCCCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceE----------------EEeCCCCCC
Confidence 34444445566777889999999999999974332 221121 111111000 001123345
Q ss_pred cchhHHHHhhCCCCCCCCCCccCccchhhHHHHHHHHHHH---hcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccChH
Q psy1198 94 TSLLSGVASSSSGPSHAPGAALDSESEDTATKAQQLLVSL---QAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVV 170 (249)
Q Consensus 94 ~~r~q~Llkrr~l~~~~~gs~~~~~~s~~~~rl~~Ll~~L---~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp~~glV 170 (249)
..|+++++++.+++ .++++++| +- .+...+++.+.++.+.|.. +.+.-+++|.+-
T Consensus 86 ~~Rl~~i~~~~~~~------------------~~~~l~~I~v~~~-~~~~~l~~~L~~l~~~l~~---~~ikLIVIDSIa 143 (256)
T PF08423_consen 86 PERLQQIAERFGLD------------------PEEILDNIFVIRV-FDLEELLELLEQLPKLLSE---SKIKLIVIDSIA 143 (256)
T ss_dssp HHHHHHHHHHTTS-------------------HHHHHHTEEEEE--SSHHHHHHHHHHHHHHHHH---SCEEEEEEETSS
T ss_pred HHHHHHHhhccccc------------------cchhhhceeeeec-CCHHHHHHHHHHHHhhccc---cceEEEEecchH
Confidence 79999999987662 23455554 33 3677788888888887754 235556677776
Q ss_pred HHHHHhcCCCCC----ccHHHHHHHHHHHHHh
Q psy1198 171 PALITLLSMDHN----FDMMNNACRALTYMME 198 (249)
Q Consensus 171 P~LV~iLs~e~n----~dLQ~eAArALTNIas 198 (249)
..|-.-+....+ ......-++.|-+|+.
T Consensus 144 alfr~e~~~~~~~~~R~~~L~~~~~~L~~lA~ 175 (256)
T PF08423_consen 144 ALFRSEFSGRGDLAERQRMLARLARILKRLAR 175 (256)
T ss_dssp HHHHHHSGSTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccchhhHHHHHHHHHHHHHHHHHHH
Confidence 666543432211 1333344455555555
No 119
>KOG2160|consensus
Probab=64.42 E-value=44 Score=32.55 Aligned_cols=111 Identities=15% Similarity=0.160 Sum_probs=72.1
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCC-CCccChHHHHHHhcCCC-CCccHHHHHHHHHHHHHhcCchhH
Q psy1198 127 QQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTG-FPVKQVVPALITLLSMD-HNFDMMNNACRALTYMMEALPRSS 204 (249)
Q Consensus 127 ~~Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~-fp~~glVP~LV~iLs~e-~n~dLQ~eAArALTNIasgtp~qT 204 (249)
++|+..+.++++....-.||-.++-++- .++|-++. ++..| ...|..+|+.. ++..+|.-|.--|.++.+......
T Consensus 169 ~~Ll~~ls~~~~~~~r~kaL~AissLIR-n~~~g~~~fl~~~G-~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~ 246 (342)
T KOG2160|consen 169 SKLLKILSSDDPNTVRTKALFAISSLIR-NNKPGQDEFLKLNG-YQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDE 246 (342)
T ss_pred HHHHHHHccCCCchHHHHHHHHHHHHHh-cCcHHHHHHHhcCC-HHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhh
Confidence 5556666653233333566666665552 23344444 44445 67888888864 678999999999999999888776
Q ss_pred HHHh--ccHHHHHHHhhcCCChhHHHHHHHHHHHhhhh
Q psy1198 205 AVVL--DAVPTFLEKLQVIQCMDVAEQSLTALEMLSRR 240 (249)
Q Consensus 205 ~~VV--GAVPiL~~kLLsi~yiDVAEQALwALenISgD 240 (249)
..+- +..-.+. -|......++-|-++.++=....+
T Consensus 247 d~~~~~~f~~~~~-~l~~~l~~~~~e~~l~~~l~~l~~ 283 (342)
T KOG2160|consen 247 DIASSLGFQRVLE-NLISSLDFEVNEAALTALLSLLSE 283 (342)
T ss_pred hHHHHhhhhHHHH-HHhhccchhhhHHHHHHHHHHHHH
Confidence 6333 4444444 477777888999998877554433
No 120
>PF10350 DUF2428: Putative death-receptor fusion protein (DUF2428); InterPro: IPR019442 This domain is found in a family of proteins of unknown function that are conserved from plants to humans. Several of these proteins have been annotated as being HEAT repeat-containing proteins while others are designated as death-receptor interacting proteins, but neither of these has yet been confirmed. Aberrations in the genes encoding these proteins have been observed in benign thyroid adenomas [].
Probab=63.81 E-value=34 Score=30.92 Aligned_cols=54 Identities=15% Similarity=0.310 Sum_probs=35.5
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCCC
Q psy1198 126 AQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMD 180 (249)
Q Consensus 126 l~~Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~e 180 (249)
+-..+-.++-.+--.....++..+|+.|...+++.+...| ...+..+++.+..+
T Consensus 101 l~~~L~~~rHrGAfe~~~~~f~~lc~~l~~~~~~~l~~LP-~~WL~~~l~~i~~~ 154 (255)
T PF10350_consen 101 LIEQLLEIRHRGAFESVYPGFTALCRRLWSSNNPELSELP-EEWLDELLEAIESK 154 (255)
T ss_pred HHHHHHhcccccHHHHHHHHHHHHHHHHhcCCCchHHHhH-HHHHHHHHHHHhcc
Confidence 3334444555455666678888888888877777766665 56677777666544
No 121
>KOG1078|consensus
Probab=63.65 E-value=12 Score=40.12 Aligned_cols=73 Identities=18% Similarity=0.204 Sum_probs=56.2
Q ss_pred ChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchhHHHHhccHHHHHHHhhcCCChhHHHHHHHHHHHhhhhchhHH
Q psy1198 168 QVVPALITLLSMDHNFDMMNNACRALTYMMEALPRSSAVVLDAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRHSKAI 245 (249)
Q Consensus 168 glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~qT~~VVGAVPiL~~kLLsi~yiDVAEQALwALenISgD~p~aI 245 (249)
.+.|-+=.+|.+ ....+++||||+++++...+++...- +|..|. .+++++..-++=-|+.+|-++|--+|..+
T Consensus 245 ~~~~fl~s~l~~-K~emV~~EaArai~~l~~~~~r~l~p---avs~Lq-~flssp~~~lRfaAvRtLnkvAm~~P~~v 317 (865)
T KOG1078|consen 245 PLFPFLESCLRH-KSEMVIYEAARAIVSLPNTNSRELAP---AVSVLQ-LFLSSPKVALRFAAVRTLNKVAMKHPQAV 317 (865)
T ss_pred hHHHHHHHHHhc-hhHHHHHHHHHHHhhccccCHhhcch---HHHHHH-HHhcCcHHHHHHHHHHHHHHHHHhCCccc
Confidence 344444555553 34678999999999999988877654 565665 36678888899999999999999999875
No 122
>KOG2973|consensus
Probab=63.15 E-value=14 Score=35.92 Aligned_cols=65 Identities=20% Similarity=0.161 Sum_probs=46.2
Q ss_pred HHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchhHHHHh----ccHHHHHHHhhcCCChhHHHHHHHHHHHhhhhc
Q psy1198 170 VPALITLLSMDHNFDMMNNACRALTYMMEALPRSSAVVL----DAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRH 241 (249)
Q Consensus 170 VP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~qT~~VV----GAVPiL~~kLLsi~yiDVAEQALwALenISgD~ 241 (249)
.-.+|.||.. .+|+++..|.+-|.++... ..++.- -.|+.+.+.+...+. +||++.||.|+|.+.
T Consensus 5 l~elv~ll~~-~sP~v~~~AV~~l~~lt~~---~~~~~~~~~~~~lk~l~qL~~~~~~---~~~a~~alVnlsq~~ 73 (353)
T KOG2973|consen 5 LVELVELLHS-LSPPVRKAAVEHLLGLTGR---GLQSLSKYSEALLKDLTQLLKDLDP---AEPAATALVNLSQKE 73 (353)
T ss_pred HHHHHHHhcc-CChHHHHHHHHHHhhcccc---chhhhccchhhhHHHHHHHccCccc---ccHHHHHHHHHHhhH
Confidence 3467888864 4789999888888777665 233333 567778874444443 899999999999887
No 123
>cd08789 CARD_IPS-1_RIG-I Caspase activation and recruitment domains (CARDs) found in IPS-1 and RIG-I-like RNA helicases. Caspase activation and recruitment domains (CARDs) found in IPS-1 (Interferon beta promoter stimulator protein 1) and Retinoic acid Inducible Gene I (RIG-I)-like DEAD box helicases. RIG-I-like helicases and IPS-1 play important roles in the induction of interferons in response to viral infection. They are crucial in triggering innate immunity and in developing adaptive immunity against viral pathogens. RIG-I-like helicases, including MDA5 and RIG-I, contain two N-terminal CARD domains and a C-terminal DEAD box RNA helicase domain. They are cytoplasmic RNA helicases that play an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. MDA5 and RIG-I associate with IPS-1 through a CARD-CAR
Probab=63.05 E-value=4.5 Score=31.28 Aligned_cols=58 Identities=19% Similarity=0.202 Sum_probs=40.2
Q ss_pred CCccChHHHHHHhcCCCCCccHH--------HHHHHHHHHHHhcCchhHHHHhccHHHHHHHhhcCCChhHHHH
Q psy1198 164 FPVKQVVPALITLLSMDHNFDMM--------NNACRALTYMMEALPRSSAVVLDAVPTFLEKLQVIQCMDVAEQ 229 (249)
Q Consensus 164 fp~~glVP~LV~iLs~e~n~dLQ--------~eAArALTNIasgtp~qT~~VVGAVPiL~~kLLsi~yiDVAEQ 229 (249)
+.+..++|.|. ||..++-.++| ..|||-|.+...--| |++|.||+-|....+.++|+.
T Consensus 18 l~~~~il~~L~-~Lt~~d~e~I~a~~~~~G~~~aa~~Ll~~L~r~~-------~Wf~~Fl~AL~~~~~~~LA~~ 83 (84)
T cd08789 18 IDVEEVLPYLT-CLTAEDKERIQAAENNSGNIKAAWTLLDTLVRRD-------NWLEPFLDALRECGLGHLARL 83 (84)
T ss_pred CcHHHHHhhCC-cCCHHHHHHHHHHHhcCChHHHHHHHHHHHhccC-------ChHHHHHHHHHHcCCHHHHHh
Confidence 55667777777 77654333332 356777666655111 899999999999999999975
No 124
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=62.93 E-value=43 Score=28.28 Aligned_cols=87 Identities=20% Similarity=0.260 Sum_probs=54.6
Q ss_pred HHHHHHHHhcCCCHHHH-HHHHHHHHHHhhcCC-CCCCC-CC--C-ccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhc
Q psy1198 126 AQQLLVSLQAIGDEDQQ-LQAVVEMCQMLVMGN-EDTLT-GF--P-VKQVVPALITLLSMDHNFDMMNNACRALTYMMEA 199 (249)
Q Consensus 126 l~~Ll~~L~S~~D~~~Q-LeAL~eLrelLSmsn-ep~I~-~f--p-~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasg 199 (249)
++.++..|++. |+... -.++.-|.+++.... -|.+. ++ | ...||+.++++++. +.+...+..+|+.++.-
T Consensus 69 ~~~Ll~~L~~~-~~~~~~~~ai~~L~~l~~~~~~~p~l~Rei~tp~l~~~i~~ll~l~~~---~~~~~~~l~~L~~ll~~ 144 (165)
T PF08167_consen 69 LRALLSILEKP-DPPSVLEAAIITLTRLFDLIRGKPTLTREIATPNLPKFIQSLLQLLQD---SSCPETALDALATLLPH 144 (165)
T ss_pred HHHHHHHHcCC-CCHHHHHHHHHHHHHHHHHhcCCCchHHHHhhccHHHHHHHHHHHHhc---cccHHHHHHHHHHHHHH
Confidence 46677778874 44443 345566666665533 33333 11 1 12677777777754 67788999999999999
Q ss_pred CchhHHHHhccHHHHHH
Q psy1198 200 LPRSSAVVLDAVPTFLE 216 (249)
Q Consensus 200 tp~qT~~VVGAVPiL~~ 216 (249)
.|...+-+.+-|..+|-
T Consensus 145 ~ptt~rp~~~ki~~~l~ 161 (165)
T PF08167_consen 145 HPTTFRPFANKIESALL 161 (165)
T ss_pred CCccccchHHHHHHHHH
Confidence 99776665555554443
No 125
>KOG1824|consensus
Probab=62.30 E-value=34 Score=37.92 Aligned_cols=106 Identities=23% Similarity=0.200 Sum_probs=58.8
Q ss_pred HHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchhH-HHHh-
Q psy1198 131 VSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEALPRSS-AVVL- 208 (249)
Q Consensus 131 ~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~qT-~~VV- 208 (249)
-.+++ ......=.++..|..+.+..+.+. -..++..|++=|.+. -|..+.|.+.-+....-++. +.+-
T Consensus 181 ~ql~s-~R~aVrKkai~~l~~la~~~~~~l-----y~~li~~Ll~~L~~~----~q~~~~rt~Iq~l~~i~r~ag~r~~~ 250 (1233)
T KOG1824|consen 181 PQLQS-PRLAVRKKAITALGHLASSCNRDL-----YVELIEHLLKGLSNR----TQMSATRTYIQCLAAICRQAGHRFGS 250 (1233)
T ss_pred hcccC-hHHHHHHHHHHHHHHHHHhcCHHH-----HHHHHHHHHhccCCC----CchHHHHHHHHHHHHHHHHhcchhhc
Confidence 34444 233333355666666666543222 123334444434332 45555555444444333332 1111
Q ss_pred ---ccHHHHHHHhh---cCCChhHHHHHHHHHHHhhhhchhHHhh
Q psy1198 209 ---DAVPTFLEKLQ---VIQCMDVAEQSLTALEMLSRRHSKAILQ 247 (249)
Q Consensus 209 ---GAVPiL~~kLL---si~yiDVAEQALwALenISgD~p~aIL~ 247 (249)
..||.+.+ -. +.++.|++|-||++||-.=.++|++|+.
T Consensus 251 h~~~ivp~v~~-y~~~~e~~dDELrE~~lQale~fl~rcp~ei~p 294 (1233)
T KOG1824|consen 251 HLDKIVPLVAD-YCNKIEEDDDELREYCLQALESFLRRCPKEILP 294 (1233)
T ss_pred ccchhhHHHHH-HhcccccCcHHHHHHHHHHHHHHHHhChhhhcc
Confidence 34455444 22 5578999999999999999999999875
No 126
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=62.29 E-value=42 Score=34.58 Aligned_cols=73 Identities=21% Similarity=0.288 Sum_probs=40.7
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchh
Q psy1198 124 TKAQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEALPRS 203 (249)
Q Consensus 124 ~rl~~Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~q 203 (249)
.-+..+++-+.+ +|...+.+|+.+|-. |+.++++- +..++..|+++|+.|+..++ -..=++|..++...|..
T Consensus 59 ~Ai~a~~DLcED-ed~~iR~~aik~lp~-~ck~~~~~-----v~kvaDvL~QlL~tdd~~E~-~~v~~sL~~ll~~d~k~ 130 (556)
T PF05918_consen 59 EAINAQLDLCED-EDVQIRKQAIKGLPQ-LCKDNPEH-----VSKVADVLVQLLQTDDPVEL-DAVKNSLMSLLKQDPKG 130 (556)
T ss_dssp HHHHHHHHHHT--SSHHHHHHHHHHGGG-G--T--T------HHHHHHHHHHHTT---HHHH-HHHHHHHHHHHHH-HHH
T ss_pred HHHHHHHHHHhc-ccHHHHHHHHHhHHH-HHHhHHHH-----HhHHHHHHHHHHhcccHHHH-HHHHHHHHHHHhcCcHH
Confidence 445666655555 688888777777633 33433333 35788899999997664443 34556777776665554
Q ss_pred H
Q psy1198 204 S 204 (249)
Q Consensus 204 T 204 (249)
|
T Consensus 131 t 131 (556)
T PF05918_consen 131 T 131 (556)
T ss_dssp H
T ss_pred H
Confidence 4
No 127
>KOG4500|consensus
Probab=61.83 E-value=23 Score=36.27 Aligned_cols=87 Identities=14% Similarity=0.155 Sum_probs=59.0
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCC-CCCccChHHHHHHhcCCC----CCccHHHHHHHHHHHHHhc
Q psy1198 125 KAQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLT-GFPVKQVVPALITLLSMD----HNFDMMNNACRALTYMMEA 199 (249)
Q Consensus 125 rl~~Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~-~fp~~glVP~LV~iLs~e----~n~dLQ~eAArALTNIasg 199 (249)
-++.++.++.| +|.+.+..+.-.+-++- ++|.+- .|...+++..|+++|.++ .|.++|.-++.||-|++=-
T Consensus 316 ~l~~~~sw~~S-~d~~l~t~g~LaigNfa---R~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IP 391 (604)
T KOG4500|consen 316 FLDFLESWFRS-DDSNLITMGSLAIGNFA---RRDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIP 391 (604)
T ss_pred HHHHHHHHhcC-CchhHHHHHHHHHHhhh---ccchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhcccc
Confidence 45777888888 48887776665555432 233333 355679999999999874 4789999999999999864
Q ss_pred CchhHHHHh-ccHHHHH
Q psy1198 200 LPRSSAVVL-DAVPTFL 215 (249)
Q Consensus 200 tp~qT~~VV-GAVPiL~ 215 (249)
-|.-.+++- |.+..++
T Consensus 392 v~nka~~~~aGvteaIL 408 (604)
T KOG4500|consen 392 VSNKAHFAPAGVTEAIL 408 (604)
T ss_pred CCchhhccccchHHHHH
Confidence 443333222 5555444
No 128
>KOG2025|consensus
Probab=61.82 E-value=67 Score=34.68 Aligned_cols=62 Identities=21% Similarity=0.342 Sum_probs=45.9
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCCCCCccHHHHHHHHHH
Q psy1198 126 AQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHNFDMMNNACRALT 194 (249)
Q Consensus 126 l~~Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~e~n~dLQ~eAArALT 194 (249)
.++|+.-|.+. .|...++|+-.||++=-+.++|. +| ++..|+.+++++.++++--.|--+|.
T Consensus 128 ~e~l~~Rl~Dr-ep~VRiqAv~aLsrlQ~d~~dee---~~---v~n~l~~liqnDpS~EVRRaaLsnI~ 189 (892)
T KOG2025|consen 128 NEKLLIRLKDR-EPNVRIQAVLALSRLQGDPKDEE---CP---VVNLLKDLIQNDPSDEVRRAALSNIS 189 (892)
T ss_pred HHHHHHHHhcc-CchHHHHHHHHHHHHhcCCCCCc---cc---HHHHHHHHHhcCCcHHHHHHHHHhhc
Confidence 45667778875 88999999999998775554444 55 78888999998888888766544443
No 129
>KOG1059|consensus
Probab=61.71 E-value=60 Score=34.98 Aligned_cols=105 Identities=19% Similarity=0.218 Sum_probs=81.3
Q ss_pred CHHHHHHHHHHHHHHhhcCCCCCC----CC---CCcc----ChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchhHHH
Q psy1198 138 DEDQQLQAVVEMCQMLVMGNEDTL----TG---FPVK----QVVPALITLLSMDHNFDMMNNACRALTYMMEALPRSSAV 206 (249)
Q Consensus 138 D~~~QLeAL~eLrelLSmsnep~I----~~---fp~~----glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~qT~~ 206 (249)
|.+..|-.+..+++-|.-.|.+-+ ++ |..- .+.+-++.+|++. -|=+-.-|.-.|+-++.-.|+..+
T Consensus 103 ~tdvlmL~tn~~rkdl~S~n~ye~giAL~GLS~fvTpdLARDLa~Dv~tLL~ss-kpYvRKkAIl~lykvFLkYPeAlr- 180 (877)
T KOG1059|consen 103 DTDVLMLTTNLLRKDLNSSNVYEVGLALSGLSCIVTPDLARDLADDVFTLLNSS-KPYVRKKAILLLYKVFLKYPEALR- 180 (877)
T ss_pred CccHHHHHHHHHHHHhccCccchhhheecccccccCchhhHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHhhhHhHh-
Confidence 455667788889998875554322 22 3322 5667778888764 477888899999999999998766
Q ss_pred HhccHHHHHHHhhcCCChhHHHHHHHHHHHhhhhchhHHhh
Q psy1198 207 VLDAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRHSKAILQ 247 (249)
Q Consensus 207 VVGAVPiL~~kLLsi~yiDVAEQALwALenISgD~p~aIL~ 247 (249)
.++|.|++||-+ +++-|.--||..+-.+|+..|+.+|.
T Consensus 181 --~~FprL~EkLeD-pDp~V~SAAV~VICELArKnPknyL~ 218 (877)
T KOG1059|consen 181 --PCFPRLVEKLED-PDPSVVSAAVSVICELARKNPQNYLQ 218 (877)
T ss_pred --hhHHHHHHhccC-CCchHHHHHHHHHHHHHhhCCccccc
Confidence 799999998866 78899999999999999999998764
No 130
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=61.64 E-value=67 Score=30.55 Aligned_cols=111 Identities=10% Similarity=0.214 Sum_probs=61.0
Q ss_pred hHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCCC-----C-CccHHHHHHHHHHH
Q psy1198 122 TATKAQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMD-----H-NFDMMNNACRALTY 195 (249)
Q Consensus 122 ~~~rl~~Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~e-----~-n~dLQ~eAArALTN 195 (249)
...=+++|.+.+.+ +++...-++|..|+ +++- ...+||.|++|+... + |..+..-..+.+--
T Consensus 176 lq~yf~~It~a~~~-~~~~~r~~aL~sL~------tD~g-----l~~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~A 243 (343)
T cd08050 176 LQLYFEEITEALVG-SNEEKRREALQSLR------TDPG-----LQQLLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRA 243 (343)
T ss_pred HHHHHHHHHHHHhC-CCHHHHHHHHHHhc------cCCC-----chhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHH
Confidence 33445777777766 36666666666653 3444 257899999999753 1 22222222222222
Q ss_pred HHhcCchh----HHHHh-ccHHHHHHHhhcC-----CChhHHHHHHHHHHHhhhhchhH
Q psy1198 196 MMEALPRS----SAVVL-DAVPTFLEKLQVI-----QCMDVAEQSLTALEMLSRRHSKA 244 (249)
Q Consensus 196 Iasgtp~q----T~~VV-GAVPiL~~kLLsi-----~yiDVAEQALwALenISgD~p~a 244 (249)
|++-..=. -+.++ -++-+++.|-+.. ++..|+|.|-..|..|.+.+...
T Consensus 244 Ll~N~~l~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~ 302 (343)
T cd08050 244 LLDNPNLHLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTS 302 (343)
T ss_pred HhcCCCCchHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCC
Confidence 22211111 22233 3333444444432 45789999999999998876643
No 131
>KOG4199|consensus
Probab=61.49 E-value=40 Score=33.63 Aligned_cols=107 Identities=9% Similarity=0.159 Sum_probs=69.5
Q ss_pred HHHHHHHH-hcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCCC-CCccHHHHHHHHHHHHHhcCchh
Q psy1198 126 AQQLLVSL-QAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMD-HNFDMMNNACRALTYMMEALPRS 203 (249)
Q Consensus 126 l~~Ll~~L-~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~e-~n~dLQ~eAArALTNIasgtp~q 203 (249)
.++|+.-+ +-.+||...-+++--+|-+-.+. ++.-..++..|.-...|+-|+.+ ..-.+|..|||.+-||+.-..++
T Consensus 330 ~~~ii~l~~~h~~~p~Vi~~~~a~i~~l~LR~-pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~~~ 408 (461)
T KOG4199|consen 330 LDKIITLALRHSDDPLVIQEVMAIISILCLRS-PDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSAEN 408 (461)
T ss_pred hHHHHHHHHHcCCChHHHHHHHHHHHHHHhcC-cchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhhhc
Confidence 35555433 32246766555666666555554 34434466778888888888753 35689999999999999988888
Q ss_pred HHHHh-ccHHHHHHHhhcCC---ChhHHHHHHHHH
Q psy1198 204 SAVVL-DAVPTFLEKLQVIQ---CMDVAEQSLTAL 234 (249)
Q Consensus 204 T~~VV-GAVPiL~~kLLsi~---yiDVAEQALwAL 234 (249)
...++ ..|..|+. --... +.+++--||.=|
T Consensus 409 ~~~~l~~GiE~Li~-~A~~~h~tce~~akaALRDL 442 (461)
T KOG4199|consen 409 RTILLANGIEKLIR-TAKANHETCEAAAKAALRDL 442 (461)
T ss_pred cchHHhccHHHHHH-HHHhcCccHHHHHHHHHHhc
Confidence 88777 77888885 33333 344444444433
No 132
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=60.99 E-value=13 Score=31.09 Aligned_cols=81 Identities=11% Similarity=0.073 Sum_probs=54.0
Q ss_pred hhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcC
Q psy1198 121 DTATKAQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEAL 200 (249)
Q Consensus 121 ~~~~rl~~Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgt 200 (249)
+...-++.|...|++ .++..|+-||.-|--+......+-...+-...|+..|+++++...+++++--+...|.+-.+.+
T Consensus 38 ~~k~a~ral~krl~~-~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f 116 (142)
T cd03569 38 QPKYAMRALKKRLLS-KNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWALAF 116 (142)
T ss_pred CHHHHHHHHHHHHcC-CChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHHh
Confidence 444556777778887 5888888888766544443322222345567899999999986566777777666666666655
Q ss_pred ch
Q psy1198 201 PR 202 (249)
Q Consensus 201 p~ 202 (249)
+.
T Consensus 117 ~~ 118 (142)
T cd03569 117 RN 118 (142)
T ss_pred CC
Confidence 43
No 133
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=59.85 E-value=35 Score=27.60 Aligned_cols=87 Identities=10% Similarity=0.162 Sum_probs=54.9
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCCC-CCccHHHHHHHHHHHHHhcCch
Q psy1198 124 TKAQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMD-HNFDMMNNACRALTYMMEALPR 202 (249)
Q Consensus 124 ~rl~~Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~e-~n~dLQ~eAArALTNIasgtp~ 202 (249)
.++...+...+-..+...+..+++.+.++..+.. +. ...+.|.+..+|+.- +.++++..|.+|...+..-+++
T Consensus 14 ~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~~~g-~~-----i~~a~pQI~acL~saL~~~eL~~~al~~W~~~i~~L~~ 87 (107)
T smart00802 14 AVFSNILHDSSGKKPYNEKKRALRSIGFLIKLMG-KH-----ISSALPQIMACLQSALEIPELRSLALRCWHVLIKTLKE 87 (107)
T ss_pred HHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHH-HH-----HHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHhCCH
Confidence 3444444443322244667788888888887653 22 367888888888742 3678999999999888877776
Q ss_pred h-HHHHh-ccHHHHHH
Q psy1198 203 S-SAVVL-DAVPTFLE 216 (249)
Q Consensus 203 q-T~~VV-GAVPiL~~ 216 (249)
. ...++ -.+..+++
T Consensus 88 ~~l~~ll~~~~~~i~~ 103 (107)
T smart00802 88 EELGPLLDQIFAAILP 103 (107)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4 23333 44444443
No 134
>KOG0213|consensus
Probab=59.15 E-value=27 Score=37.96 Aligned_cols=98 Identities=15% Similarity=0.268 Sum_probs=67.9
Q ss_pred HHHHHHHHHHhhcCC-CCCCCCCCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchhHHHHh--ccHHHHHHHhh
Q psy1198 143 LQAVVEMCQMLVMGN-EDTLTGFPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEALPRSSAVVL--DAVPTFLEKLQ 219 (249)
Q Consensus 143 LeAL~eLrelLSmsn-ep~I~~fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~qT~~VV--GAVPiL~~kLL 219 (249)
|-|+..++...-|.+ .| |..+++|+|.-||++.| ..+|-.+.--+--|++--|+...+=- -.-=-|++ ||
T Consensus 862 LgAikaI~nvigm~km~p-----Pi~dllPrltPILknrh-eKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLle-lL 934 (1172)
T KOG0213|consen 862 LGAIKAIVNVIGMTKMTP-----PIKDLLPRLTPILKNRH-EKVQENCIDLVGTIADRGPEYVSAREWMRICFELLE-LL 934 (1172)
T ss_pred HHHHHHHHHhccccccCC-----ChhhhcccchHhhhhhH-HHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHH-HH
Confidence 344444444444432 33 35789999999998754 78898888889999999888532211 22233555 45
Q ss_pred cCCChhHHHHHHHHHHHhhhh-chhHHhh
Q psy1198 220 VIQCMDVAEQSLTALEMLSRR-HSKAILQ 247 (249)
Q Consensus 220 si~yiDVAEQALwALenISgD-~p~aIL~ 247 (249)
......++--++.++|.||+- +|.+||-
T Consensus 935 kahkK~iRRaa~nTfG~IakaIGPqdVLa 963 (1172)
T KOG0213|consen 935 KAHKKEIRRAAVNTFGYIAKAIGPQDVLA 963 (1172)
T ss_pred HHHHHHHHHHHHhhhhHHHHhcCHHHHHH
Confidence 557789999999999999975 6777764
No 135
>KOG1242|consensus
Probab=59.14 E-value=74 Score=33.07 Aligned_cols=50 Identities=20% Similarity=0.280 Sum_probs=38.6
Q ss_pred HHHHHHHHHhcCchhHHHHh-ccHHHHHHHhhcCCChhHHHHHHHHHHHhhh
Q psy1198 189 ACRALTYMMEALPRSSAVVL-DAVPTFLEKLQVIQCMDVAEQSLTALEMLSR 239 (249)
Q Consensus 189 AArALTNIasgtp~qT~~VV-GAVPiL~~kLLsi~yiDVAEQALwALenISg 239 (249)
+.-.|-.|++--|.|-..-. ..||.+.+.|-+ ...+|++|+..||-++..
T Consensus 274 slellg~m~~~ap~qLs~~lp~iiP~lsevl~D-T~~evr~a~~~~l~~~~s 324 (569)
T KOG1242|consen 274 SLELLGAMADCAPKQLSLCLPDLIPVLSEVLWD-TKPEVRKAGIETLLKFGS 324 (569)
T ss_pred HHHHHHHHHHhchHHHHHHHhHhhHHHHHHHcc-CCHHHHHHHHHHHHHHHH
Confidence 34455566677777766666 999999997766 679999999999998754
No 136
>KOG1241|consensus
Probab=58.67 E-value=22 Score=38.16 Aligned_cols=80 Identities=15% Similarity=0.190 Sum_probs=58.6
Q ss_pred ccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchhHHHH-----h-ccHHHHHHHhhcCCC------hhHHHHHHHH
Q psy1198 166 VKQVVPALITLLSMDHNFDMMNNACRALTYMMEALPRSSAVV-----L-DAVPTFLEKLQVIQC------MDVAEQSLTA 233 (249)
Q Consensus 166 ~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~qT~~V-----V-GAVPiL~~kLLsi~y------iDVAEQALwA 233 (249)
...+++.|++=|. ++|.+--.+||++.++++..++.+..= + .-.+.++..|+...+ -.++=-+-.|
T Consensus 447 l~~~l~~l~~gL~--DePrva~N~CWAf~~Laea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeA 524 (859)
T KOG1241|consen 447 LQSKLSALLEGLN--DEPRVASNVCWAFISLAEAAYEAAVSNGQTDPATPFYEAIIGSLLKVTDRADGNQSNLRSAAYEA 524 (859)
T ss_pred hhHHHHHHHHHhh--hCchHHHHHHHHHHHHHHHHHHhccCCCCCCccchhHHHHHHHHHhhccccccchhhHHHHHHHH
Confidence 3467777777775 569999999999999998877764332 2 355666777776543 2466678889
Q ss_pred HHHhhhhchhHHhh
Q psy1198 234 LEMLSRRHSKAILQ 247 (249)
Q Consensus 234 LenISgD~p~aIL~ 247 (249)
|..|.+-+|++|..
T Consensus 525 LmElIk~st~~vy~ 538 (859)
T KOG1241|consen 525 LMELIKNSTDDVYP 538 (859)
T ss_pred HHHHHHcCcHHHHH
Confidence 99999988888753
No 137
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=58.53 E-value=42 Score=25.71 Aligned_cols=69 Identities=6% Similarity=0.098 Sum_probs=49.3
Q ss_pred ccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchhHHHHhccHHHHHHHhh---cCCChhHHHHHHHHHHHh
Q psy1198 166 VKQVVPALITLLSMDHNFDMMNNACRALTYMMEALPRSSAVVLDAVPTFLEKLQ---VIQCMDVAEQSLTALEML 237 (249)
Q Consensus 166 ~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~qT~~VVGAVPiL~~kLL---si~yiDVAEQALwALenI 237 (249)
...|+..|..++++..+.+++-.--+||.+|.+...+.- --.-|.+.+-|. .-+..++.+.|.++++.|
T Consensus 15 Q~~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~~~i---~SGW~~if~il~~aa~~~~e~lv~~af~~~~~I 86 (86)
T PF09324_consen 15 QKDFLKPFEYIMSNNPSIDVRELILECILQILQSRGENI---KSGWKVIFSILRAAAKDNDESLVRLAFQIVQLI 86 (86)
T ss_pred HHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhHHHH---HhccHHHHHHHHHHHhCCCccHHHHHHHHHhhC
Confidence 357888899999888889999999999999998555332 222333332222 335788999999988875
No 138
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=58.24 E-value=10 Score=31.54 Aligned_cols=72 Identities=11% Similarity=0.062 Sum_probs=48.2
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCC-CCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHh
Q psy1198 124 TKAQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTG-FPVKQVVPALITLLSMDHNFDMMNNACRALTYMME 198 (249)
Q Consensus 124 ~rl~~Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~-fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIas 198 (249)
.-++.|++-|...+|+...-.|+..+-++.-.- |..-. +..-++=.++.++|++ .+++++++|-.|+--|+.
T Consensus 43 ~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~--p~gr~ii~~lg~K~~vM~Lm~h-~d~eVr~eAL~avQklm~ 115 (119)
T PF11698_consen 43 ELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHY--PNGRNIIEKLGAKERVMELMNH-EDPEVRYEALLAVQKLMV 115 (119)
T ss_dssp HHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH---GGGHHHHHHHSHHHHHHHHTS--SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCcceeehhhcchHHHHHHC--hhHHHHHHhcChHHHHHHHhcC-CCHHHHHHHHHHHHHHHH
Confidence 345667777743357877778888877766552 22112 2233777888899987 479999999999987764
No 139
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=58.18 E-value=11 Score=35.20 Aligned_cols=62 Identities=21% Similarity=0.270 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCch
Q psy1198 139 EDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEALPR 202 (249)
Q Consensus 139 ~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~ 202 (249)
+...-.||+..+=+|+......+..+ ....+|+|+.+|+.+ +.++|.-|..+|.-|.|....
T Consensus 200 ~~l~~aAL~aW~lLlt~~~~~~~~~~-~~~~~~~l~~lL~s~-d~~VRiAAGEaiAll~E~~~~ 261 (309)
T PF05004_consen 200 AALVAAALSAWALLLTTLPDSKLEDL-LEEALPALSELLDSD-DVDVRIAAGEAIALLYELARD 261 (309)
T ss_pred cHHHHHHHHHHHHHHhcCCHHHHHHH-HHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHhhc
Confidence 44566777888777765322123322 246799999999865 699999999999999887663
No 140
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=57.95 E-value=8.7 Score=37.82 Aligned_cols=50 Identities=8% Similarity=0.139 Sum_probs=38.8
Q ss_pred cChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchhHHHHh-ccHHHHHH
Q psy1198 167 KQVVPALITLLSMDHNFDMMNNACRALTYMMEALPRSSAVVL-DAVPTFLE 216 (249)
Q Consensus 167 ~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~qT~~VV-GAVPiL~~ 216 (249)
..+|..|++-+++|+|.+||..+|.+|..+.+-......... -.|.-||.
T Consensus 311 nPiIrpLMdSIK~Een~~LQ~rsA~slA~Li~~~~~rkp~PndKIvkNLc~ 361 (441)
T PF12054_consen 311 NPIIRPLMDSIKREENELLQQRSAESLARLIQLCVDRKPCPNDKIVKNLCT 361 (441)
T ss_pred cHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHhh
Confidence 378999999999999999999999999999886654433333 45555554
No 141
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=57.74 E-value=17 Score=30.52 Aligned_cols=97 Identities=9% Similarity=0.108 Sum_probs=64.7
Q ss_pred hhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhc
Q psy1198 120 EDTATKAQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEA 199 (249)
Q Consensus 120 s~~~~rl~~Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasg 199 (249)
.+...-++.|...|++ .++..|+.||.-|--+.-....+-...|-...|+..|+++++...+++++......|-...+.
T Consensus 33 ~~~k~a~ral~KRl~~-~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~ 111 (144)
T cd03568 33 NGAKDCLKAIMKRLNH-KDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADE 111 (144)
T ss_pred ccHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHH
Confidence 3444556777778888 589999998877755444433333334666799999999998766788888888888887777
Q ss_pred CchhHHHHhccHHHHHHHhh
Q psy1198 200 LPRSSAVVLDAVPTFLEKLQ 219 (249)
Q Consensus 200 tp~qT~~VVGAVPiL~~kLL 219 (249)
++..... ..|.-+.++|.
T Consensus 112 f~~~~~l--~~i~~~y~~L~ 129 (144)
T cd03568 112 FKNDPSL--SLMSDLYKKLK 129 (144)
T ss_pred hCCCccc--HHHHHHHHHHH
Confidence 7643221 33444444443
No 142
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=56.25 E-value=21 Score=28.81 Aligned_cols=39 Identities=21% Similarity=0.272 Sum_probs=30.3
Q ss_pred HHHHHHhcC-CCCCccHHHHHHHHHHHHHhcCchhHHHHh
Q psy1198 170 VPALITLLS-MDHNFDMMNNACRALTYMMEALPRSSAVVL 208 (249)
Q Consensus 170 VP~LV~iLs-~e~n~dLQ~eAArALTNIasgtp~qT~~VV 208 (249)
+|.++.+-. .++||-+..-|.|||-|+++++++.-.+|-
T Consensus 30 i~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~ 69 (102)
T PF09759_consen 30 IPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIA 69 (102)
T ss_pred hHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 555554433 467999999999999999999998766554
No 143
>KOG4413|consensus
Probab=56.23 E-value=50 Score=33.01 Aligned_cols=100 Identities=15% Similarity=0.185 Sum_probs=64.6
Q ss_pred CCHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCC------CCCccHHHHHHHHHHHHHhcCchhHHHHh-c
Q psy1198 137 GDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSM------DHNFDMMNNACRALTYMMEALPRSSAVVL-D 209 (249)
Q Consensus 137 ~D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~------e~n~dLQ~eAArALTNIasgtp~qT~~VV-G 209 (249)
.||...+.++.-+-|+++.++ |-.+....++.+++-+... -++|+.|-.|.-+|--|-+-+ +-...+. -
T Consensus 269 sdPfekfralmgfgkffgkea---imdvseeaicealiiaidgsfEmiEmnDpdaieaAiDalGilGSnt-eGadlllkT 344 (524)
T KOG4413|consen 269 SDPFEKFRALMGFGKFFGKEA---IMDVSEEAICEALIIAIDGSFEMIEMNDPDAIEAAIDALGILGSNT-EGADLLLKT 344 (524)
T ss_pred CCcHHHHHHHHHHHHHhcchH---HhhcCHHHHHHHHHHHHHhhHHhhhcCCchHHHHHHHHHHhccCCc-chhHHHhcc
Confidence 478888888888888886642 3344456677777666653 146888888888887776643 3334444 4
Q ss_pred cHHHHHHHhhcC---CChhHHHHHHHHHHHhhhh
Q psy1198 210 AVPTFLEKLQVI---QCMDVAEQSLTALEMLSRR 240 (249)
Q Consensus 210 AVPiL~~kLLsi---~yiDVAEQALwALenISgD 240 (249)
.-|.+-+.|..+ +.---.|-++.||.+|+++
T Consensus 345 gppaaehllarafdqnahakqeaaihaLaaIage 378 (524)
T KOG4413|consen 345 GPPAAEHLLARAFDQNAHAKQEAAIHALAAIAGE 378 (524)
T ss_pred CChHHHHHHHHHhcccccchHHHHHHHHHHhhcc
Confidence 445555433332 3344578899999999986
No 144
>KOG1240|consensus
Probab=56.00 E-value=27 Score=39.29 Aligned_cols=87 Identities=18% Similarity=0.247 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCCCCCccHHHHHHHHHH----HHHhcCchhHHHHh-ccHHHHHH
Q psy1198 142 QLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHNFDMMNNACRALT----YMMEALPRSSAVVL-DAVPTFLE 216 (249)
Q Consensus 142 QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~e~n~dLQ~eAArALT----NIasgtp~qT~~VV-GAVPiL~~ 216 (249)
.++-|++|.+.++.+ ...+.++|-||+++.. ...++|-.|-..|| ++-+..|.....++ =..|-|-.
T Consensus 443 ALeLl~~lS~~i~de-------~~LDRVlPY~v~l~~D-s~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP~L~~ 514 (1431)
T KOG1240|consen 443 ALELLQELSTYIDDE-------VKLDRVLPYFVHLLMD-SEADVRATALETLTELLALVRDIPPSDANIFPEYLFPHLNH 514 (1431)
T ss_pred HHHHHHHHhhhcchH-------HHHhhhHHHHHHHhcC-chHHHHHHHHHHHHHHHhhccCCCcccchhhHhhhhhhhHh
Confidence 344445555444332 3457899999999975 46889888865555 55566666677777 77888886
Q ss_pred HhhcCC-----------ChhHHHHHHHHHHH
Q psy1198 217 KLQVIQ-----------CMDVAEQSLTALEM 236 (249)
Q Consensus 217 kLLsi~-----------yiDVAEQALwALen 236 (249)
.+.+.. --++|++|..-|+.
T Consensus 515 l~~d~~~~~vRiayAsnla~LA~tA~rFle~ 545 (1431)
T KOG1240|consen 515 LLNDSSAQIVRIAYASNLAQLAKTAYRFLEL 545 (1431)
T ss_pred hhccCccceehhhHHhhHHHHHHHHHHHHHH
Confidence 443311 13566666655543
No 145
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=53.90 E-value=1.3e+02 Score=30.14 Aligned_cols=36 Identities=28% Similarity=0.355 Sum_probs=30.5
Q ss_pred ccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCc
Q psy1198 166 VKQVVPALITLLSMDHNFDMMNNACRALTYMMEALP 201 (249)
Q Consensus 166 ~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp 201 (249)
...+||+|+.+|+.+++++.|--||-.|-.|.....
T Consensus 60 ~q~LI~~Li~~L~p~~~~~~q~naa~~L~aII~is~ 95 (475)
T PF04499_consen 60 EQNLIPRLIDLLSPSYSSDVQSNAADFLKAIIRISR 95 (475)
T ss_pred HhCHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhh
Confidence 459999999999988889999999988877766544
No 146
>KOG0946|consensus
Probab=53.87 E-value=1.2e+02 Score=33.10 Aligned_cols=116 Identities=16% Similarity=0.180 Sum_probs=81.8
Q ss_pred HHHHHHHHh-cCCCHHHHHHHHHHHHHHhhcCC------CCC-CCC--------CC-ccChHHHHHHhcCCCCCccHHHH
Q psy1198 126 AQQLLVSLQ-AIGDEDQQLQAVVEMCQMLVMGN------EDT-LTG--------FP-VKQVVPALITLLSMDHNFDMMNN 188 (249)
Q Consensus 126 l~~Ll~~L~-S~~D~~~QLeAL~eLrelLSmsn------ep~-I~~--------fp-~~glVP~LV~iLs~e~n~dLQ~e 188 (249)
++-+|+.|+ +..|+...-.+|.-++.+++.+. ++. .+. |+ ...+|..|+.++.. .++-+-+-
T Consensus 63 mk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~-~DF~VR~~ 141 (970)
T KOG0946|consen 63 MKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEE-FDFHVRLY 141 (970)
T ss_pred cHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcchhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHh-hchhhhhH
Confidence 567777775 44566666678888999888874 222 111 22 23788888888875 45888889
Q ss_pred HHHHHHHHHhcCchhHHHHh----ccHHHHHHHhhcCCChhHHHHHHHHHHHhhhhchh
Q psy1198 189 ACRALTYMMEALPRSSAVVL----DAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRHSK 243 (249)
Q Consensus 189 AArALTNIasgtp~qT~~VV----GAVPiL~~kLLsi~yiDVAEQALwALenISgD~p~ 243 (249)
|..-|+++++--|...+-.+ -+|..|++ |+.-...-++-.+|--|--+.+|++.
T Consensus 142 aIqLlsalls~r~~e~q~~ll~~P~gIS~lmd-lL~DsrE~IRNe~iLlL~eL~k~n~~ 199 (970)
T KOG0946|consen 142 AIQLLSALLSCRPTELQDALLVSPMGISKLMD-LLRDSREPIRNEAILLLSELVKDNSS 199 (970)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHCchhHHHHHH-HHhhhhhhhchhHHHHHHHHHccCch
Confidence 99999999999998876655 77888887 44434445677777777777777664
No 147
>cd08812 CARD_RIG-I_like Caspase activation and recruitment domains found in RIG-I-like DEAD box helicases. Caspase activation and recruitment domains (CARDs) found in Retinoic acid Inducible Gene I (RIG-I)-like DEAD box helicases. These helicases, including MDA5 and RIG-I, contain two N-terminal CARD domains and a C-terminal DEAD box RNA helicase domain. They are cytoplasmic RNA helicases that play an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, RIG-I and MDA5 have been shown to recognize different sets of viruses. MDA5 and RIG-I associate with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mec
Probab=52.49 E-value=10 Score=29.46 Aligned_cols=59 Identities=19% Similarity=0.205 Sum_probs=40.9
Q ss_pred CCccChHHHHHHhcCCCCCccH--------HHHHHHHHHHHHhc--CchhHHHHhccHHHHHHHhhcCCChhHHHH
Q psy1198 164 FPVKQVVPALITLLSMDHNFDM--------MNNACRALTYMMEA--LPRSSAVVLDAVPTFLEKLQVIQCMDVAEQ 229 (249)
Q Consensus 164 fp~~glVP~LV~iLs~e~n~dL--------Q~eAArALTNIasg--tp~qT~~VVGAVPiL~~kLLsi~yiDVAEQ 229 (249)
+.+..++|.|.++|..++-.++ -..|||-|.+...- -| |+.+.||+-|....+.++|+.
T Consensus 19 l~p~~il~~l~~~L~~~~~e~I~a~~~~~g~~~aa~~Ll~~L~~~r~~-------~wf~~Fl~AL~~~g~~~la~~ 87 (88)
T cd08812 19 IIPRDILDHLPECLTDEDKEQILAEERNKGNIAAAEELLDRLERCDKP-------GWFQAFLDALRRTGNDDLAKE 87 (88)
T ss_pred cCHHHHHHHHHHHcCHHHHHHHHHHHhccChHHHHHHHHHHHHHhccC-------CcHHHHHHHHHHcCCccHHHh
Confidence 5567888999988875432222 23556666655541 11 899999999999999888874
No 148
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=52.16 E-value=41 Score=28.95 Aligned_cols=70 Identities=14% Similarity=0.282 Sum_probs=54.1
Q ss_pred ChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchhHHHHh---ccHHHHHHHhhcCCChhHHHHHHHHHHHhhhhchhH
Q psy1198 168 QVVPALITLLSMDHNFDMMNNACRALTYMMEALPRSSAVVL---DAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRHSKA 244 (249)
Q Consensus 168 glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~qT~~VV---GAVPiL~~kLLsi~yiDVAEQALwALenISgD~p~a 244 (249)
.|++.+.++.-. .+.++++.|.+.|--+.. |- .| -.||.|+. |..+++.++++.|...|..|-..++.=
T Consensus 8 ryl~~Il~~~~~-~~~~vr~~Al~~l~~il~----qG--LvnP~~cvp~lIA-L~ts~~~~ir~~A~~~l~~l~eK~~s~ 79 (187)
T PF12830_consen 8 RYLKNILELCLS-SDDSVRLAALQVLELILR----QG--LVNPKQCVPTLIA-LETSPNPSIRSRAYQLLKELHEKHESL 79 (187)
T ss_pred HHHHHHHHHHhC-CCHHHHHHHHHHHHHHHh----cC--CCChHHHHhHhhh-hhCCCChHHHHHHHHHHHHHHHHhHHH
Confidence 456666665543 468899999988877765 11 22 57899997 989999999999999999999888765
Q ss_pred H
Q psy1198 245 I 245 (249)
Q Consensus 245 I 245 (249)
|
T Consensus 80 v 80 (187)
T PF12830_consen 80 V 80 (187)
T ss_pred H
Confidence 4
No 149
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=51.63 E-value=67 Score=31.83 Aligned_cols=23 Identities=17% Similarity=0.273 Sum_probs=16.7
Q ss_pred hhHHHHHHHHHHHhhhhchhHHh
Q psy1198 224 MDVAEQSLTALEMLSRRHSKAIL 246 (249)
Q Consensus 224 iDVAEQALwALenISgD~p~aIL 246 (249)
..++-+|||||.+++..+|+.+-
T Consensus 494 ~~iR~~Av~Alr~~a~~~p~~v~ 516 (574)
T smart00638 494 TFIRLAAILALRNLAKRDPRKVQ 516 (574)
T ss_pred HHHHHHHHHHHHHHHHhCchHHH
Confidence 45777888888888777776653
No 150
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=51.22 E-value=77 Score=33.69 Aligned_cols=35 Identities=11% Similarity=0.131 Sum_probs=29.1
Q ss_pred ccHHHHHHHhhcCCChhHHHHHHHHHHHhhhhchhH
Q psy1198 209 DAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRHSKA 244 (249)
Q Consensus 209 GAVPiL~~kLLsi~yiDVAEQALwALenISgD~p~a 244 (249)
.|+|.+.. +.+-+++-|.|-.-||++.|+---+..
T Consensus 408 qalp~i~n-~m~D~~l~vk~ttAwc~g~iad~va~~ 442 (858)
T COG5215 408 QALPGIEN-EMSDSCLWVKSTTAWCFGAIADHVAMI 442 (858)
T ss_pred hhhHHHHH-hcccceeehhhHHHHHHHHHHHHHHHh
Confidence 88999997 666789999999999999998655444
No 151
>PTZ00035 Rad51 protein; Provisional
Probab=50.50 E-value=1.5e+02 Score=28.11 Aligned_cols=149 Identities=17% Similarity=0.180 Sum_probs=76.3
Q ss_pred CCCchhHHHHHhhhCCCCCCccceeccCCCCCchhhhhhhccCCc-cccCCCcccCCCCCCCCccccccccccccccccc
Q psy1198 16 HHNSGSAAAAAATSGGGQGGKAATLYGAPGGGKAATLYAQSGMSA-GETQGGSVAGEEDKNAGAQGSTSTSGAASGTAST 94 (249)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (249)
+..+|+..-=....||=.-|...-+||.||.||..-...-..... -...||.. +. ..-=-.+.+-+.
T Consensus 99 ~isTG~~~LD~lLgGGi~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~--------g~----vvyIdtE~~f~~ 166 (337)
T PTZ00035 99 RITTGSTQLDKLLGGGIETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGE--------GK----VLYIDTEGTFRP 166 (337)
T ss_pred cccCCcHHHHHHhCCCCCCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCC--------ce----EEEEEccCCCCH
Confidence 345555555555667777889999999999999765532211100 00001100 00 000000122345
Q ss_pred chhHHHHhhCCCCCCCCCCccCccchhhHHHHHHHHHHH---hcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHH
Q psy1198 95 SLLSGVASSSSGPSHAPGAALDSESEDTATKAQQLLVSL---QAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVP 171 (249)
Q Consensus 95 ~r~q~Llkrr~l~~~~~gs~~~~~~s~~~~rl~~Ll~~L---~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP 171 (249)
.|+.++.++.++++. +++++| +. .+...+++.+.++.+++. +..+.-+.+|++-.
T Consensus 167 eri~~ia~~~g~~~~------------------~~l~nI~~~~~-~~~e~~~~~l~~~~~~l~---~~~~~lvVIDSita 224 (337)
T PTZ00035 167 ERIVQIAERFGLDPE------------------DVLDNIAYARA-YNHEHQMQLLSQAAAKMA---EERFALLIVDSATA 224 (337)
T ss_pred HHHHHHHHHhCCChH------------------hHhhceEEEcc-CCHHHHHHHHHHHHHHhh---ccCccEEEEECcHH
Confidence 789999998877422 122222 22 255667777777766654 24455566777766
Q ss_pred HHHHhcCCCCC----ccHHHHHHHHHHHHHh
Q psy1198 172 ALITLLSMDHN----FDMMNNACRALTYMME 198 (249)
Q Consensus 172 ~LV~iLs~e~n----~dLQ~eAArALTNIas 198 (249)
.|-.-+....+ ......-.+.|..+++
T Consensus 225 l~r~~~~~~~~~~~r~~~l~~~~~~L~~la~ 255 (337)
T PTZ00035 225 LFRVDYSGRGELAERQQHLGKFLRALQKLAD 255 (337)
T ss_pred hhhhhccCcccHHHHHHHHHHHHHHHHHHHH
Confidence 55432322111 1223345566666665
No 152
>KOG1789|consensus
Probab=50.21 E-value=86 Score=35.83 Aligned_cols=109 Identities=17% Similarity=0.143 Sum_probs=77.7
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchhH
Q psy1198 125 KAQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEALPRSS 204 (249)
Q Consensus 125 rl~~Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~qT 204 (249)
.++-+...|++..|+..|.-+|+-+..+- .+.|-+..+-.++++-.|..+|- ..|...-.+--.||-+.+ +|+-.
T Consensus 1772 ~F~l~~~~lr~~~~~~iq~LaL~Vi~~~T--an~~Cv~~~a~~~vL~~LL~lLH--S~PS~R~~vL~vLYAL~S-~~~i~ 1846 (2235)
T KOG1789|consen 1772 NFPLLITYLRCRKHPKLQILALQVILLAT--ANKECVTDLATCNVLTTLLTLLH--SQPSMRARVLDVLYALSS-NGQIG 1846 (2235)
T ss_pred ccHHHHHHHHHcCCchHHHHHHHHHHHHh--cccHHHHHHHhhhHHHHHHHHHh--cChHHHHHHHHHHHHHhc-CcHHH
Confidence 45667778888778888877887776544 44666666777888889999884 346665566667776666 34444
Q ss_pred HHHh--ccHHHHHHHhhcCCChhHHHHHHHHHHHhh
Q psy1198 205 AVVL--DAVPTFLEKLQVIQCMDVAEQSLTALEMLS 238 (249)
Q Consensus 205 ~~VV--GAVPiL~~kLLsi~yiDVAEQALwALenIS 238 (249)
.... |++-.+.+.|.......++-|+-.-|+|+-
T Consensus 1847 keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~ 1882 (2235)
T KOG1789|consen 1847 KEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQ 1882 (2235)
T ss_pred HHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhh
Confidence 3333 887777777777788999999999888854
No 153
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=49.37 E-value=22 Score=28.70 Aligned_cols=31 Identities=16% Similarity=0.209 Sum_probs=21.2
Q ss_pred cHHHHHHHhhcCCChhHHHHHHHHHHHhhhhc
Q psy1198 210 AVPTFLEKLQVIQCMDVAEQSLTALEMLSRRH 241 (249)
Q Consensus 210 AVPiL~~kLLsi~yiDVAEQALwALenISgD~ 241 (249)
+|+.|+..|-+ ++.+|++-|+..|+...-+.
T Consensus 9 ~i~lLv~QL~D-~~~~V~~~A~~iL~e~c~~~ 39 (115)
T PF14663_consen 9 GIELLVTQLYD-PSPEVVAAALEILEEACEDK 39 (115)
T ss_pred HHHHHHHHhcC-CCHHHHHHHHHHHHHHHhch
Confidence 46677766655 44577777777777777665
No 154
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=48.82 E-value=62 Score=33.78 Aligned_cols=79 Identities=19% Similarity=0.228 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchhHHHHh-ccHHHHHHH
Q psy1198 139 EDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEALPRSSAVVL-DAVPTFLEK 217 (249)
Q Consensus 139 ~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~qT~~VV-GAVPiL~~k 217 (249)
+...+.+|.-||.++.. ..+-+-.+....+++.|++||..|.++-+-..|.-||+-++=-.|....-.. .-..+|..
T Consensus 82 ~~~Rl~~L~Ll~~~v~~-qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~ip~~l~~~L~~Lf~If~R- 159 (668)
T PF04388_consen 82 PSYRLQALTLLGHFVRS-QPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLPHIPSSLGPHLPDLFNIFGR- 159 (668)
T ss_pred chhHHHHHHHHHHHHhc-CCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHH-
Confidence 45678899999988865 2333445767799999999999988888888888888888877776554444 66667774
Q ss_pred hh
Q psy1198 218 LQ 219 (249)
Q Consensus 218 LL 219 (249)
|+
T Consensus 160 l~ 161 (668)
T PF04388_consen 160 LL 161 (668)
T ss_pred HH
Confidence 55
No 155
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=48.34 E-value=2e+02 Score=25.61 Aligned_cols=103 Identities=19% Similarity=0.172 Sum_probs=60.4
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHh---------cCCCCCccHHHHHHHHHHHH
Q psy1198 126 AQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITL---------LSMDHNFDMMNNACRALTYM 196 (249)
Q Consensus 126 l~~Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~i---------Ls~e~n~dLQ~eAArALTNI 196 (249)
+-+++..+.+.++...+..+++.++++.... +-. | +++..++.. .+.+.+.+.++-.++++..|
T Consensus 39 v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~--~r~--f---~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~i 111 (234)
T PF12530_consen 39 VLQTLVSLVEQGSLELRYVALRLLTLLWKAN--DRH--F---PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDI 111 (234)
T ss_pred HHHHHHHHHcCCchhHHHHHHHHHHHHHHhC--chH--H---HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHH
Confidence 3444445544334444456778888877663 321 2 455555555 22344667788889999999
Q ss_pred HhcCchhHHHHhccHHHHHHHhhcCCChhHHHHHHHHHHHhh
Q psy1198 197 MEALPRSSAVVLDAVPTFLEKLQVIQCMDVAEQSLTALEMLS 238 (249)
Q Consensus 197 asgtp~qT~~VVGAVPiL~~kLLsi~yiDVAEQALwALenIS 238 (249)
+...|+....++..|-.+++ ......++-=+|++|.-+-
T Consensus 112 c~~~p~~g~~ll~~ls~~L~---~~~~~~~~alale~l~~Lc 150 (234)
T PF12530_consen 112 CCSRPDHGVDLLPLLSGCLN---QSCDEVAQALALEALAPLC 150 (234)
T ss_pred HHhChhhHHHHHHHHHHHHh---ccccHHHHHHHHHHHHHHH
Confidence 99999966655555555542 3333444444555555443
No 156
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=48.27 E-value=35 Score=27.97 Aligned_cols=79 Identities=10% Similarity=0.068 Sum_probs=48.3
Q ss_pred hhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCCCCCcc-HHHHHHHHHHHHHhc
Q psy1198 121 DTATKAQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHNFD-MMNNACRALTYMMEA 199 (249)
Q Consensus 121 ~~~~rl~~Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~e~n~d-LQ~eAArALTNIasg 199 (249)
+...-++.|...|++ .+|..|+.||.-|--+......+-...+-...|+..|+++++...+.+ ++-.+...+-+-.+.
T Consensus 34 ~~k~a~r~l~krl~~-~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~~ 112 (133)
T smart00288 34 GPKDAVRLLKKRLNN-KNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWADA 112 (133)
T ss_pred cHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHH
Confidence 344456667777887 588888888776655444432222234556688899998888654433 555555555554444
Q ss_pred C
Q psy1198 200 L 200 (249)
Q Consensus 200 t 200 (249)
+
T Consensus 113 f 113 (133)
T smart00288 113 F 113 (133)
T ss_pred H
Confidence 4
No 157
>KOG0212|consensus
Probab=47.36 E-value=83 Score=33.10 Aligned_cols=111 Identities=17% Similarity=0.201 Sum_probs=63.4
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCCCCCccH-----------------------
Q psy1198 129 LLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHNFDM----------------------- 185 (249)
Q Consensus 129 Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~e~n~dL----------------------- 185 (249)
++..+++ .++-.|+.|+.=+.+.+.....+-+... .+++..+..++...++..+
T Consensus 255 lv~~l~s-s~~~iq~~al~Wi~efV~i~g~~~l~~~--s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~ 331 (675)
T KOG0212|consen 255 LVPHLQS-SEPEIQLKALTWIQEFVKIPGRDLLLYL--SGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEE 331 (675)
T ss_pred ccccccC-CcHHHHHHHHHHHHHHhcCCCcchhhhh--hhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhhccc
Confidence 3455677 4888999999999998887655443322 2444444444443221111
Q ss_pred ---------------------HHHHHHHHHHHHhcCchhHHHHh-ccHHHHHHHhhcCCChhHHHHHHHHHHHhhhhchh
Q psy1198 186 ---------------------MNNACRALTYMMEALPRSSAVVL-DAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRHSK 243 (249)
Q Consensus 186 ---------------------Q~eAArALTNIasgtp~qT~~VV-GAVPiL~~kLLsi~yiDVAEQALwALenISgD~p~ 243 (249)
...+-.-+..+..-+|.+.-+.- ...+.|+.-| +-...+|.+++|..|-+|+.++-.
T Consensus 332 id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql~~h~~~if~tLL~tL-sd~sd~vvl~~L~lla~i~~s~~~ 410 (675)
T KOG0212|consen 332 IDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPGQLLVHNDSIFLTLLKTL-SDRSDEVVLLALSLLASICSSSNS 410 (675)
T ss_pred cchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcchhhhhccHHHHHHHHhh-cCchhHHHHHHHHHHHHHhcCccc
Confidence 11111112223333333332222 5566666544 336789999999999999988754
No 158
>KOG2274|consensus
Probab=47.13 E-value=83 Score=34.63 Aligned_cols=94 Identities=14% Similarity=0.124 Sum_probs=62.9
Q ss_pred HHHHHHHHhcCCC----HHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCc
Q psy1198 126 AQQLLVSLQAIGD----EDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEALP 201 (249)
Q Consensus 126 l~~Ll~~L~S~~D----~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp 201 (249)
++.||.-|+.. + ...+..++.=|.-+| +.++|||......-..|++.+|.-+.++-..+-.+--||-.+.+.++
T Consensus 615 iPslisil~~~-~~~~~~~l~~~aidvLttvv-r~tp~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~~~ 692 (1005)
T KOG2274|consen 615 IPSLISVLQLN-ADKAPAGLCAIAIDVLTTVL-RNTPSPLPNLLICYAFPAVAKITLHSDDHETLQNATECLRALISVTL 692 (1005)
T ss_pred HHHHHHHHcCc-ccccCchhhHHHHHHHHHHH-hcCCCCccHHHHHHHhHHhHhheeecCChHHHHhHHHHHHHHHhcCH
Confidence 46677767653 3 344445555554444 45677777644567889999998776667777789999999999998
Q ss_pred hhHHHHh-----c--cHHHHHHHhhcC
Q psy1198 202 RSSAVVL-----D--AVPTFLEKLQVI 221 (249)
Q Consensus 202 ~qT~~VV-----G--AVPiL~~kLLsi 221 (249)
+|+..-- + -|-..+++||+-
T Consensus 693 eq~~t~~~e~g~~~~yImqV~sqLLdp 719 (1005)
T KOG2274|consen 693 EQLLTWHDEPGHNLWYIMQVLSQLLDP 719 (1005)
T ss_pred HHHHhhccCCCccHHHHHHHHHHHcCC
Confidence 8865443 3 344445566653
No 159
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=47.02 E-value=9.7 Score=28.80 Aligned_cols=15 Identities=40% Similarity=0.605 Sum_probs=12.2
Q ss_pred eeccCCCCCchhhhh
Q psy1198 39 TLYGAPGGGKAATLY 53 (249)
Q Consensus 39 ~~~~~~~~~~~~~~~ 53 (249)
-|||.||.||....-
T Consensus 2 ll~G~~G~GKT~l~~ 16 (132)
T PF00004_consen 2 LLHGPPGTGKTTLAR 16 (132)
T ss_dssp EEESSTTSSHHHHHH
T ss_pred EEECcCCCCeeHHHH
Confidence 489999999987654
No 160
>KOG2973|consensus
Probab=45.98 E-value=2e+02 Score=28.33 Aligned_cols=107 Identities=18% Similarity=0.129 Sum_probs=67.1
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCC--ccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCch
Q psy1198 125 KAQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFP--VKQVVPALITLLSMDHNFDMMNNACRALTYMMEALPR 202 (249)
Q Consensus 125 rl~~Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp--~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~ 202 (249)
.+.+++.-+.+ ..|..+..|++.+--+-.. +...+. ....++.+.+++...+ + ---|+++|-|++.. +
T Consensus 4 ~l~elv~ll~~-~sP~v~~~AV~~l~~lt~~----~~~~~~~~~~~~lk~l~qL~~~~~-~--~~~a~~alVnlsq~--~ 73 (353)
T KOG2973|consen 4 ELVELVELLHS-LSPPVRKAAVEHLLGLTGR----GLQSLSKYSEALLKDLTQLLKDLD-P--AEPAATALVNLSQK--E 73 (353)
T ss_pred HHHHHHHHhcc-CChHHHHHHHHHHhhcccc----chhhhccchhhhHHHHHHHccCcc-c--ccHHHHHHHHHHhh--H
Confidence 45677777777 5788888888776544333 333222 2356788999887533 2 45789999999862 2
Q ss_pred hHHHHh--ccHHHHHHHhhcCCChhHHHHHHHHHHHhhhhch
Q psy1198 203 SSAVVL--DAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRHS 242 (249)
Q Consensus 203 qT~~VV--GAVPiL~~kLLsi~yiDVAEQALwALenISgD~p 242 (249)
-.+.++ .-+..+..++.+ +--.+|+-....|.|+|+|-.
T Consensus 74 ~l~~~ll~~~~k~l~~~~~~-p~~~lad~~cmlL~NLs~~~~ 114 (353)
T KOG2973|consen 74 ELRKKLLQDLLKVLMDMLTD-PQSPLADLICMLLSNLSRDDD 114 (353)
T ss_pred HHHHHHHHHHHHHHHHHhcC-cccchHHHHHHHHHHhccCch
Confidence 233333 323333333333 335699999999999999754
No 161
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=45.46 E-value=43 Score=36.27 Aligned_cols=58 Identities=17% Similarity=0.243 Sum_probs=39.1
Q ss_pred hhHHHHHHHHHHHhcC----CCHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCCCCCcc
Q psy1198 121 DTATKAQQLLVSLQAI----GDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHNFD 184 (249)
Q Consensus 121 ~~~~rl~~Ll~~L~S~----~D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~e~n~d 184 (249)
+..+++..+|+.+.+. .|+..|+.|.--|.|+.+.+++ | ...-+|.|+..|++.++|-
T Consensus 888 svLs~F~pvVeE~csn~~~~sd~~lq~aA~l~L~klMClS~~-----f-c~ehlpllIt~mek~p~P~ 949 (1128)
T COG5098 888 SVLSNFKPVVEEGCSNSSRFSDEELQVAAYLSLYKLMCLSFE-----F-CSEHLPLLITSMEKHPIPR 949 (1128)
T ss_pred HHHhhhhHHHHHHhccccccCCHHHHHHHHHHHHHHHHHhHH-----H-HHHHHHHHHHHHhhCCCcc
Confidence 3457888888877654 6999999999888888777653 2 2344566666665443343
No 162
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=45.22 E-value=56 Score=26.60 Aligned_cols=81 Identities=11% Similarity=0.076 Sum_probs=52.6
Q ss_pred hhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCC--CCCccHHHHHHHHHHHHHh
Q psy1198 121 DTATKAQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSM--DHNFDMMNNACRALTYMME 198 (249)
Q Consensus 121 ~~~~rl~~Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~--e~n~dLQ~eAArALTNIas 198 (249)
+...-++.|...|++ .++..|+-||.-|-.+......+-...|-...|+..|++++.. ..+++++..+...|-+..+
T Consensus 34 ~~k~a~raL~krl~~-~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~ 112 (133)
T cd03561 34 GPKEAARAIRKKIKY-GNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSE 112 (133)
T ss_pred CHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHH
Confidence 444556777777887 5899999888776554444322222234445788889999976 3456777777777766666
Q ss_pred cCch
Q psy1198 199 ALPR 202 (249)
Q Consensus 199 gtp~ 202 (249)
.++.
T Consensus 113 ~f~~ 116 (133)
T cd03561 113 SFGG 116 (133)
T ss_pred HhcC
Confidence 6554
No 163
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=45.15 E-value=1.1e+02 Score=32.88 Aligned_cols=115 Identities=16% Similarity=0.121 Sum_probs=76.4
Q ss_pred hhHHHHHHHHH----HHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCC--------CCc----cChHHHHHHhcCCCCCcc
Q psy1198 121 DTATKAQQLLV----SLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTG--------FPV----KQVVPALITLLSMDHNFD 184 (249)
Q Consensus 121 ~~~~rl~~Ll~----~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~--------fp~----~glVP~LV~iLs~e~n~d 184 (249)
.....+++|+- ..-. .+|..++.|+..+.+=|.-.| |.|-. +.+ ..+++.+.++|.++ ++.
T Consensus 66 trd~ElKrL~ylYl~~yak-~~P~~~lLavNti~kDl~d~N-~~iR~~AlR~ls~l~~~el~~~~~~~ik~~l~d~-~ay 142 (757)
T COG5096 66 TRDVELKRLLYLYLERYAK-LKPELALLAVNTIQKDLQDPN-EEIRGFALRTLSLLRVKELLGNIIDPIKKLLTDP-HAY 142 (757)
T ss_pred hcCHHHHHHHHHHHHHHhc-cCHHHHHHHHHHHHhhccCCC-HHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCC-cHH
Confidence 44455666653 2233 477778888887777665443 22221 222 35667777777654 589
Q ss_pred HHHHHHHHHHHHHhcCchhHHHHhccHHHHHHHhhcCCChhHHHHHHHHHHHhhhh
Q psy1198 185 MMNNACRALTYMMEALPRSSAVVLDAVPTFLEKLQVIQCMDVAEQSLTALEMLSRR 240 (249)
Q Consensus 185 LQ~eAArALTNIasgtp~qT~~VVGAVPiL~~kLLsi~yiDVAEQALwALenISgD 240 (249)
+--.||-|+.+|.+..++-.+.. |.+-++.. |+.-++.+|.--|+-+|..|=.+
T Consensus 143 VRk~Aalav~kly~ld~~l~~~~-g~~~~l~~-l~~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 143 VRKTAALAVAKLYRLDKDLYHEL-GLIDILKE-LVADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred HHHHHHHHHHHHHhcCHhhhhcc-cHHHHHHH-HhhCCCchHHHHHHHHHHHhchh
Confidence 99999999999999888654421 56667776 55557788888888888887555
No 164
>KOG1932|consensus
Probab=44.48 E-value=46 Score=37.15 Aligned_cols=63 Identities=17% Similarity=0.140 Sum_probs=49.1
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCCCC-CccHHHHHHHHHHHHHhcCchhH
Q psy1198 130 LVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDH-NFDMMNNACRALTYMMEALPRSS 204 (249)
Q Consensus 130 l~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~e~-n~dLQ~eAArALTNIasgtp~qT 204 (249)
+..|+.+.|...||||++.|.. +|.....-.|...|.++. -..+-.+||.||+-.+...+..|
T Consensus 648 ~~QLr~drDVvAQ~EAI~~le~------------~p~~~s~~~L~rtl~der~FyrIR~~Aa~aLak~a~~~~dwt 711 (1180)
T KOG1932|consen 648 VYQLRQDRDVVAQMEAIESLEA------------LPSTASRSALTRTLEDERYFYRIRIAAAFALAKTANGESDWT 711 (1180)
T ss_pred HHHHHhcccHHHHHHHHHHHHc------------CCcchhHHHHHHHHhhcchhhHHHHHHHHHHHHhhccccccc
Confidence 4567655699999999988743 455667788999887765 35889999999999999876665
No 165
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=44.34 E-value=1.1e+02 Score=26.22 Aligned_cols=71 Identities=24% Similarity=0.231 Sum_probs=56.5
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchhH
Q psy1198 126 AQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEALPRSS 204 (249)
Q Consensus 126 l~~Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~qT 204 (249)
++.|++-..+ .|...++.|++=+.-+|...= +.+...||.||.+... .++.+.-.|-..|..+.+-.|.-.
T Consensus 10 l~~Il~~~~~-~~~~vr~~Al~~l~~il~qGL------vnP~~cvp~lIAL~ts-~~~~ir~~A~~~l~~l~eK~~s~v 80 (187)
T PF12830_consen 10 LKNILELCLS-SDDSVRLAALQVLELILRQGL------VNPKQCVPTLIALETS-PNPSIRSRAYQLLKELHEKHESLV 80 (187)
T ss_pred HHHHHHHHhC-CCHHHHHHHHHHHHHHHhcCC------CChHHHHhHhhhhhCC-CChHHHHHHHHHHHHHHHHhHHHH
Confidence 5778876667 488888989988877776531 3446799999998775 679999999999999999887664
No 166
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=44.21 E-value=59 Score=30.98 Aligned_cols=93 Identities=19% Similarity=0.246 Sum_probs=58.9
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCC-CCCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCch
Q psy1198 124 TKAQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLT-GFPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEALPR 202 (249)
Q Consensus 124 ~rl~~Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~-~fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~ 202 (249)
..++.|++.|.+......+-.++.+||+.+.. +..- .|-..+++.+|++.|......++--.++-|+.++......
T Consensus 21 Dev~ylld~l~~~~~~s~Rr~sll~La~K~~~---~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~ 97 (361)
T PF07814_consen 21 DEVEYLLDGLESSSSSSVRRSSLLELASKCAD---PQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGL 97 (361)
T ss_pred HHHHHHHhhcccCCCccHHHHHHHHHHHHhCC---HHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCc
Confidence 45677888888544556666788888876643 2222 3666799999999996543333555555677777776554
Q ss_pred hHHHHh--ccHHHHHHHhhc
Q psy1198 203 SSAVVL--DAVPTFLEKLQV 220 (249)
Q Consensus 203 qT~~VV--GAVPiL~~kLLs 220 (249)
..+.+- ..+..+. +|+.
T Consensus 98 ~~~l~~~~~~~~ll~-~Ll~ 116 (361)
T PF07814_consen 98 NMHLLLDRDSLRLLL-KLLK 116 (361)
T ss_pred chhhhhchhHHHHHH-HHhc
Confidence 444433 4455555 4666
No 167
>KOG3665|consensus
Probab=43.18 E-value=68 Score=33.75 Aligned_cols=70 Identities=13% Similarity=0.161 Sum_probs=52.8
Q ss_pred ChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchhHHHHh--ccHHHHHHHhhcCCChhHHHHHHHHHHHh
Q psy1198 168 QVVPALITLLSMDHNFDMMNNACRALTYMMEALPRSSAVVL--DAVPTFLEKLQVIQCMDVAEQSLTALEML 237 (249)
Q Consensus 168 glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~qT~~VV--GAVPiL~~kLLsi~yiDVAEQALwALenI 237 (249)
.|-|.+-.++.....+..|+-|-|++.|+++..|+....+- +-++.+.+.=..+...++++-++.-++++
T Consensus 624 ~f~~~~~~il~~s~~~g~~lWal~ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 695 (699)
T KOG3665|consen 624 SFFPRILRILRLSKSDGSQLWALWTIKNVLEQNKEYCKLVRESNGFELIENIRVLSEVVDVKEEAVLVIESC 695 (699)
T ss_pred hcchhHHHHhcccCCCchHHHHHHHHHHHHHcChhhhhhhHhccchhhhhhcchhHHHHHHHHHHHHHhhcc
Confidence 33344667777777899999999999999999999776666 88888876333444788888877776654
No 168
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=43.05 E-value=85 Score=28.72 Aligned_cols=81 Identities=20% Similarity=0.329 Sum_probs=52.6
Q ss_pred cCCCCCCCC-CCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchhH---------HHHh-ccHHHHHHHhhc---
Q psy1198 155 MGNEDTLTG-FPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEALPRSS---------AVVL-DAVPTFLEKLQV--- 220 (249)
Q Consensus 155 msnep~I~~-fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~qT---------~~VV-GAVPiL~~kLLs--- 220 (249)
..+.+-|.. ++ -++|.+..++++ +++++....|+||..+.+-.|... ..|+ .|+-.++--|=.
T Consensus 107 ~~~~~~i~~~~~--liiP~iL~llDD-~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp 183 (282)
T PF10521_consen 107 QLDRPWISQHWP--LIIPPILNLLDD-YSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITP 183 (282)
T ss_pred cCCcchHHHhhh--HHHhhHHHHhcC-CCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCC
Confidence 334455553 43 589999999975 479999999999999999888776 3333 443333311111
Q ss_pred -CCChhHHHHHHHHHHHhh
Q psy1198 221 -IQCMDVAEQSLTALEMLS 238 (249)
Q Consensus 221 -i~yiDVAEQALwALenIS 238 (249)
-+.+.|-+.+.-||-.+.
T Consensus 184 ~~~s~~Ll~~ay~~L~~L~ 202 (282)
T PF10521_consen 184 EDESLELLQAAYPALLSLL 202 (282)
T ss_pred chhhHHHHHHHHHHHHHHH
Confidence 234567777777776663
No 169
>KOG2956|consensus
Probab=42.91 E-value=1.3e+02 Score=30.88 Aligned_cols=103 Identities=22% Similarity=0.257 Sum_probs=63.2
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchh
Q psy1198 124 TKAQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEALPRS 203 (249)
Q Consensus 124 ~rl~~Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~q 203 (249)
.-+..++.+++..+..+.+=+|+.+|-+++.-...-.-+.+ ...++-.++++|+...++-.--+|-|.|.-|+..-|
T Consensus 286 ~~v~~~l~~~~g~e~a~~~k~alsel~~m~~e~sfsvWeq~-f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~-- 362 (516)
T KOG2956|consen 286 ALVADLLKEISGSERASERKEALSELPKMLCEGSFSVWEQH-FAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQP-- 362 (516)
T ss_pred HHHHHHHHhccCccchhHHHHHHHHHHHHHHccchhHHHHH-HHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhch--
Confidence 34566777777642334455888888888865321111111 135777888999876678888999999999998544
Q ss_pred HHHHhccHHHHHHHhhc----CC--ChhHHHHH
Q psy1198 204 SAVVLDAVPTFLEKLQV----IQ--CMDVAEQS 230 (249)
Q Consensus 204 T~~VVGAVPiL~~kLLs----i~--yiDVAEQA 230 (249)
..+++-..+-+.|+++ .. -+.+|||+
T Consensus 363 -~~l~DstE~ai~K~Leaa~ds~~~v~~~Aeed 394 (516)
T KOG2956|consen 363 -ARLFDSTEIAICKVLEAAKDSQDEVMRVAEED 394 (516)
T ss_pred -HhhhchHHHHHHHHHHHHhCCchhHHHHHHHH
Confidence 3344333333334442 22 25688887
No 170
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=41.97 E-value=99 Score=24.97 Aligned_cols=68 Identities=13% Similarity=0.316 Sum_probs=48.6
Q ss_pred ChHHHHHHhcCCCC---CccHHHHHHHHHHHHHhcCchhHHHHhccHHHHHHHhh-cCCChhHHHHHHHHHHHhh
Q psy1198 168 QVVPALITLLSMDH---NFDMMNNACRALTYMMEALPRSSAVVLDAVPTFLEKLQ-VIQCMDVAEQSLTALEMLS 238 (249)
Q Consensus 168 glVP~LV~iLs~e~---n~dLQ~eAArALTNIasgtp~qT~~VVGAVPiL~~kLL-si~yiDVAEQALwALenIS 238 (249)
|++..|.+.|.+.+ ...-+..+-|++-.|..... ..|..+.|.++..|. .+++.|+++-|+.|....-
T Consensus 11 Gil~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~~~g---~~i~~a~pQI~acL~saL~~~eL~~~al~~W~~~i 82 (107)
T smart00802 11 GILAVFSNILHDSSGKKPYNEKKRALRSIGFLIKLMG---KHISSALPQIMACLQSALEIPELRSLALRCWHVLI 82 (107)
T ss_pred HHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHH
Confidence 56777777776544 44558888999988888533 333378888887666 4578899999998876543
No 171
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=41.62 E-value=2.1e+02 Score=23.88 Aligned_cols=108 Identities=17% Similarity=0.134 Sum_probs=60.4
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchhHHH
Q psy1198 127 QQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEALPRSSAV 206 (249)
Q Consensus 127 ~~Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~qT~~ 206 (249)
.++|+...+..-+..-.....++|+++.- ++ ......+..|-+=|....|+.+|+.|-..|=-++.--....+.
T Consensus 3 ~~~IekATse~l~~~dw~~ileicD~In~-~~-----~~~k~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~ 76 (141)
T cd03565 3 GQLIEKATDGSLQSEDWGLNMEICDIINE-TE-----DGPKDAVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHV 76 (141)
T ss_pred hHHHHHHcCcCCCCcCHHHHHHHHHHHhC-CC-----CcHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHH
Confidence 34455444422223345667788887743 11 1234566666666654456778877755555555544444443
Q ss_pred Hh---ccHHH-HHHHhhcC---CChhHHHHHHHHHHHhhhhc
Q psy1198 207 VL---DAVPT-FLEKLQVI---QCMDVAEQSLTALEMLSRRH 241 (249)
Q Consensus 207 VV---GAVPi-L~~kLLsi---~yiDVAEQALwALenISgD~ 241 (249)
-| .-+-- |+. +++- ...+|.+.++..+..-+...
T Consensus 77 eiask~Fl~e~L~~-~i~~~~~~~~~Vk~kil~li~~W~~~f 117 (141)
T cd03565 77 LVAKKDFIKDVLVK-LINPKNNPPTIVQEKVLALIQAWADAF 117 (141)
T ss_pred HHHHHHhhhHHHHH-HHcccCCCcHHHHHHHHHHHHHHHHHh
Confidence 33 44443 564 4432 23588999988888766554
No 172
>KOG3723|consensus
Probab=41.61 E-value=2.3e+02 Score=30.28 Aligned_cols=85 Identities=18% Similarity=0.296 Sum_probs=56.0
Q ss_pred HHHHhhcCCCCCCCCCCccChHHHHHHhcCCCCCcc-HHHHHHHHHHHHHhcCchhHHHHhccHHHHHHHhhcCCChhHH
Q psy1198 149 MCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHNFD-MMNNACRALTYMMEALPRSSAVVLDAVPTFLEKLQVIQCMDVA 227 (249)
Q Consensus 149 LrelLSmsnep~I~~fp~~glVP~LV~iLs~e~n~d-LQ~eAArALTNIasgtp~qT~~VVGAVPiL~~kLLsi~yiDVA 227 (249)
|=++|||--|---+ +...++|+|.-+|.. ++ .+..+-+.|+-+.. -.++.++---||.||-.|++++++|+.
T Consensus 182 LLrvlS~Vye~~P~--~i~PhlP~l~~lL~q---~~p~~~~ll~~l~~LI~--Qk~~evL~~ciP~L~g~l~ds~~~~i~ 254 (851)
T KOG3723|consen 182 LLRVLSAVYEKQPQ--PINPHLPELLALLSQ---LEPEQYHLLRLLHVLIK--QKQLEVLQKCIPFLIGHLKDSTHNDII 254 (851)
T ss_pred HHHHHHHHHhcCCC--ccCcccHHHHHHhcC---CCHHHHHHHHHHHHHHH--hccHHHHHHHHHHHHHHhccccchhHH
Confidence 55666662221111 124589999988864 34 55666666666655 233443338999999999999999999
Q ss_pred HHHHHHHHHhhhh
Q psy1198 228 EQSLTALEMLSRR 240 (249)
Q Consensus 228 EQALwALenISgD 240 (249)
-|.+..|-+|..-
T Consensus 255 ~~Ilk~ia~~~pv 267 (851)
T KOG3723|consen 255 LNILKEIAVYEPV 267 (851)
T ss_pred HHHHHHHHhcCcc
Confidence 8888777776543
No 173
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=40.98 E-value=17 Score=26.42 Aligned_cols=22 Identities=27% Similarity=0.456 Sum_probs=16.8
Q ss_pred ccceeccCCCCCchhhhhhhcc
Q psy1198 36 KAATLYGAPGGGKAATLYAQSG 57 (249)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~ 57 (249)
....++|.||.||...+..-..
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~ 24 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALAR 24 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHh
Confidence 4567999999999988755433
No 174
>KOG2549|consensus
Probab=40.27 E-value=96 Score=32.28 Aligned_cols=47 Identities=13% Similarity=0.290 Sum_probs=33.6
Q ss_pred hhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCC
Q psy1198 121 DTATKAQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSM 179 (249)
Q Consensus 121 ~~~~rl~~Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~ 179 (249)
-.+.=+++|.+.+-+ .|+...-+||+.| ++++- + ..++|.||.|+..
T Consensus 204 ElQlYy~~It~a~~g-~~~~~r~eAL~sL------~TDsG---L--~~LlPyFv~fIae 250 (576)
T KOG2549|consen 204 ELQLYYKEITEACTG-SDEPLRQEALQSL------ETDSG---L--QQLLPYFVTFIAE 250 (576)
T ss_pred HHHHHHHHHHHHHhc-CCHHHHHHHHHhh------ccCcc---H--HHHHHHHHHHHhh
Confidence 344456888888887 4776666788876 44444 2 5789999999975
No 175
>KOG1062|consensus
Probab=40.24 E-value=93 Score=33.77 Aligned_cols=98 Identities=12% Similarity=0.146 Sum_probs=66.5
Q ss_pred HHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchhHHHHh-cc
Q psy1198 132 SLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEALPRSSAVVL-DA 210 (249)
Q Consensus 132 ~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~qT~~VV-GA 210 (249)
-|++ .+...+=.||..|+.+-+-+ + ...+.|...++|++ .+|-+-.-|+-|++.+.--.|+....++ ..
T Consensus 115 DL~s-~nq~vVglAL~alg~i~s~E-------m-ardlapeVe~Ll~~-~~~~irKKA~Lca~r~irK~P~l~e~f~~~~ 184 (866)
T KOG1062|consen 115 DLNS-SNQYVVGLALCALGNICSPE-------M-ARDLAPEVERLLQH-RDPYIRKKAALCAVRFIRKVPDLVEHFVIAF 184 (866)
T ss_pred hccC-CCeeehHHHHHHhhccCCHH-------H-hHHhhHHHHHHHhC-CCHHHHHHHHHHHHHHHHcCchHHHHhhHHH
Confidence 3455 24444545666666655442 2 24688999999987 5699999999999999999999877665 21
Q ss_pred H--------------HHHHHHhhcC------CChhHHHHHHHHHHHhhh
Q psy1198 211 V--------------PTFLEKLQVI------QCMDVAEQSLTALEMLSR 239 (249)
Q Consensus 211 V--------------PiL~~kLLsi------~yiDVAEQALwALenISg 239 (249)
. -.||-.|..+ .|-|+.++-+..|.+|..
T Consensus 185 ~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~l~~~lV~iLk~l~~ 233 (866)
T KOG1062|consen 185 RKLLCEKHHGVLIAGLHLITELCKISPDALSYFRDLVPSLVKILKQLTN 233 (866)
T ss_pred HHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 1 2222234444 367888888888888764
No 176
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=40.23 E-value=1.8e+02 Score=22.65 Aligned_cols=104 Identities=13% Similarity=0.178 Sum_probs=61.1
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchhHHH
Q psy1198 127 QQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEALPRSSAV 206 (249)
Q Consensus 127 ~~Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~qT~~ 206 (249)
+++|....+.+....--..+.++|++.... + -....++..|.+=|++. ++..++.|-..|=+++.--.+..+.
T Consensus 2 ~~~v~~AT~~~~~~p~~~~i~~i~d~~~~~---~---~~~~~~~~~l~kRl~~~-~~~~~lkaL~lLe~lvkN~g~~f~~ 74 (115)
T cd00197 2 EKTVEKATSNENMGPDWPLIMEICDLINET---N---VGPKEAVDAIKKRINNK-NPHVVLKALTLLEYCVKNCGERFHQ 74 (115)
T ss_pred hHHHHHHcCCCCCCCCHHHHHHHHHHHHCC---C---ccHHHHHHHHHHHhcCC-cHHHHHHHHHHHHHHHHHccHHHHH
Confidence 455555555322333345667888877432 1 11234666777667654 7999999988888888766655544
Q ss_pred Hh--cc-HHHHHHHh-----h-cCCChhHHHHHHHHHHHhh
Q psy1198 207 VL--DA-VPTFLEKL-----Q-VIQCMDVAEQSLTALEMLS 238 (249)
Q Consensus 207 VV--GA-VPiL~~kL-----L-si~yiDVAEQALwALenIS 238 (249)
-+ .. +--++ ++ . .-....|+|.++..++..+
T Consensus 75 ~i~~~~~~~~l~-~~~~~~~~~~~~~~~Vr~k~~~l~~~w~ 114 (115)
T cd00197 75 EVASNDFAVELL-KFDKSKLLGDDVSTNVREKAIELVQLWA 114 (115)
T ss_pred HHHHhHHHHHHH-HhhccccccCCCChHHHHHHHHHHHHHh
Confidence 44 22 11222 11 1 1236788999988887654
No 177
>KOG2611|consensus
Probab=40.20 E-value=46 Score=34.59 Aligned_cols=62 Identities=13% Similarity=0.204 Sum_probs=42.8
Q ss_pred CCCCCCCCCC-ccChHHHHHHhcCCCCCcc------HHHHHHHHHHHHHhcCchhHHHHh-ccHHHHHHH
Q psy1198 156 GNEDTLTGFP-VKQVVPALITLLSMDHNFD------MMNNACRALTYMMEALPRSSAVVL-DAVPTFLEK 217 (249)
Q Consensus 156 snep~I~~fp-~~glVP~LV~iLs~e~n~d------LQ~eAArALTNIasgtp~qT~~VV-GAVPiL~~k 217 (249)
..+|-|...+ .-.-||.|.++++.-.++| +--++=-|||-++..-+.+.+-+. |+||.++|.
T Consensus 91 C~~pElAsh~~~v~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G~~~Lia~G~~~~~~Q~ 160 (698)
T KOG2611|consen 91 CRVPELASHEEMVSRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAGLMTLIASGGLRVIAQM 160 (698)
T ss_pred hCChhhccCHHHHHhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCchhHHHHhcCchHHHHHH
Confidence 3445554322 1256888999998655555 556677899999988666666555 999999983
No 178
>KOG2274|consensus
Probab=40.10 E-value=1.9e+02 Score=31.98 Aligned_cols=98 Identities=17% Similarity=0.187 Sum_probs=63.4
Q ss_pred hcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCCCC---CccHHHHHHHHHHHHHhcCchhH-HHHh-
Q psy1198 134 QAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDH---NFDMMNNACRALTYMMEALPRSS-AVVL- 208 (249)
Q Consensus 134 ~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~e~---n~dLQ~eAArALTNIasgtp~qT-~~VV- 208 (249)
+..+||...-.+..-+-+++-.+. ... --..-++|.||.+|.-+. .+.++..|.-.||-+...+|.-- ..++
T Consensus 582 k~s~DP~V~~~~qd~f~el~q~~~--~~g-~m~e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~ 658 (1005)
T KOG2274|consen 582 KYSEDPQVASLAQDLFEELLQIAA--NYG-PMQERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLIC 658 (1005)
T ss_pred HhcCCchHHHHHHHHHHHHHHHHH--hhc-chHHHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHH
Confidence 444688443333333334443322 111 224679999999998653 47889999999999999998763 4444
Q ss_pred ccHHHHHHHhhcCCChh---HHHHHHHHH
Q psy1198 209 DAVPTFLEKLQVIQCMD---VAEQSLTAL 234 (249)
Q Consensus 209 GAVPiL~~kLLsi~yiD---VAEQALwAL 234 (249)
-+.|.+.+.++.+++-. .+-.||.++
T Consensus 659 ~~FpaVak~tlHsdD~~tlQ~~~EcLra~ 687 (1005)
T KOG2274|consen 659 YAFPAVAKITLHSDDHETLQNATECLRAL 687 (1005)
T ss_pred HHhHHhHhheeecCChHHHHhHHHHHHHH
Confidence 88999998787776533 344455544
No 179
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=39.65 E-value=1.4e+02 Score=23.65 Aligned_cols=70 Identities=13% Similarity=0.216 Sum_probs=48.2
Q ss_pred ChHHHHHHhcCC---CCCccHHHHHHHHHHHHHhcCchhHHHHhccHHHHHHHhhc-CCChhHHHHHHHHHHHhhhh
Q psy1198 168 QVVPALITLLSM---DHNFDMMNNACRALTYMMEALPRSSAVVLDAVPTFLEKLQV-IQCMDVAEQSLTALEMLSRR 240 (249)
Q Consensus 168 glVP~LV~iLs~---e~n~dLQ~eAArALTNIasgtp~qT~~VVGAVPiL~~kLLs-i~yiDVAEQALwALenISgD 240 (249)
|++..|.+.|.+ ..+...+..+-++|-.|....+.... .+.|.++..|.. .++.|+.+-++.|..-.-+-
T Consensus 11 gil~~f~~~l~d~~~~~~~~ek~~~l~si~~lI~~~~~~i~---~~~pQI~a~L~sal~~~~l~~~al~~W~~fi~~ 84 (107)
T PF08064_consen 11 GILTRFSDVLNDLRGKKPIPEKKRALRSIEELIKLGGSHIS---SARPQIMACLQSALEIPELREEALSCWNCFIKT 84 (107)
T ss_pred HHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHhHHHHH---HHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHH
Confidence 556666666665 34566788999999999985554444 567777766653 35668999999887654443
No 180
>KOG2023|consensus
Probab=39.64 E-value=87 Score=33.74 Aligned_cols=108 Identities=19% Similarity=0.258 Sum_probs=69.8
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchhH
Q psy1198 125 KAQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEALPRSS 204 (249)
Q Consensus 125 rl~~Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~qT 204 (249)
-+++.++-.+. ..|...-.|+--++..+-.-+.... +-.+.|+..|..+= ++++|+++-.-||+|+.+.|+-|+..
T Consensus 175 mipkfl~f~~h-~spkiRs~A~~cvNq~i~~~~qal~--~~iD~Fle~lFala-nD~~~eVRk~vC~alv~Llevr~dkl 250 (885)
T KOG2023|consen 175 MIPKFLQFFKH-PSPKIRSHAVGCVNQFIIIQTQALY--VHIDKFLEILFALA-NDEDPEVRKNVCRALVFLLEVRPDKL 250 (885)
T ss_pred hHHHHHHHHhC-CChhHHHHHHhhhhheeecCcHHHH--HHHHHHHHHHHHHc-cCCCHHHHHHHHHHHHHHHHhcHHhc
Confidence 45677776776 4676666677666665544322221 23356777666644 67789999999999999999999875
Q ss_pred HHHh-ccHHHHHHHhhcCCChhHHHHHHHHHHHh
Q psy1198 205 AVVL-DAVPTFLEKLQVIQCMDVAEQSLTALEML 237 (249)
Q Consensus 205 ~~VV-GAVPiL~~kLLsi~yiDVAEQALwALenI 237 (249)
.-=. +.|..++++-.. .+.+||=.|..-.--|
T Consensus 251 ~phl~~IveyML~~tqd-~dE~VALEACEFwla~ 283 (885)
T KOG2023|consen 251 VPHLDNIVEYMLQRTQD-VDENVALEACEFWLAL 283 (885)
T ss_pred ccchHHHHHHHHHHccC-cchhHHHHHHHHHHHH
Confidence 4444 788888874444 4566664444433333
No 181
>smart00567 EZ_HEAT E-Z type HEAT repeats. Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Probab=39.53 E-value=27 Score=21.09 Aligned_cols=22 Identities=23% Similarity=0.200 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHhhhhchhHHhh
Q psy1198 226 VAEQSLTALEMLSRRHSKAILQ 247 (249)
Q Consensus 226 VAEQALwALenISgD~p~aIL~ 247 (249)
|+..++++|++|-.+.....|.
T Consensus 3 vR~~aa~aLg~~~~~~a~~~L~ 24 (30)
T smart00567 3 VRHEAAFALGQLGDEEAVPALI 24 (30)
T ss_pred HHHHHHHHHHHcCCHhHHHHHH
Confidence 6778999999997766666554
No 182
>KOG1242|consensus
Probab=39.49 E-value=2.1e+02 Score=29.80 Aligned_cols=111 Identities=14% Similarity=0.175 Sum_probs=68.7
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCCCC-----------------------
Q psy1198 125 KAQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDH----------------------- 181 (249)
Q Consensus 125 rl~~Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~e~----------------------- 181 (249)
=++.+.+.|+++ ++..+=.+..-+-++=+...||- ...++|.|+++|..+.
T Consensus 296 iiP~lsevl~DT-~~evr~a~~~~l~~~~svidN~d-----I~~~ip~Lld~l~dp~~~~~e~~~~L~~ttFV~~V~~ps 369 (569)
T KOG1242|consen 296 LIPVLSEVLWDT-KPEVRKAGIETLLKFGSVIDNPD-----IQKIIPTLLDALADPSCYTPECLDSLGATTFVAEVDAPS 369 (569)
T ss_pred hhHHHHHHHccC-CHHHHHHHHHHHHHHHHhhccHH-----HHHHHHHHHHHhcCcccchHHHHHhhcceeeeeeecchh
Confidence 345666677874 77776555555555555544444 2567888888887532
Q ss_pred ---------------CccHHHHHHHHHHHHHhcCchhH--HHHh-ccHHHHHHHhhcCCChhHHHHHHHHHHHhhhhch
Q psy1198 182 ---------------NFDMMNNACRALTYMMEALPRSS--AVVL-DAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRHS 242 (249)
Q Consensus 182 ---------------n~dLQ~eAArALTNIasgtp~qT--~~VV-GAVPiL~~kLLsi~yiDVAEQALwALenISgD~p 242 (249)
+..+-..+|-..=||+.-.++.- .-+. --+|-|-.-+... ..++++-+..||+.+-++-.
T Consensus 370 LalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~~Llp~lk~~~~d~-~PEvR~vaarAL~~l~e~~g 447 (569)
T KOG1242|consen 370 LALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLPSLLPGLKENLDDA-VPEVRAVAARALGALLERLG 447 (569)
T ss_pred HHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHHHHhhHHHHHhcCC-ChhHHHHHHHHHHHHHHHHH
Confidence 23445667778888888774432 2222 5556665544454 68899988888876655443
No 183
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=39.44 E-value=39 Score=26.33 Aligned_cols=49 Identities=12% Similarity=0.103 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCCCCCccHHHHHHHHH
Q psy1198 139 EDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHNFDMMNNACRAL 193 (249)
Q Consensus 139 ~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~e~n~dLQ~eAArAL 193 (249)
+.....++.-+...++. -++..+....+++.+.++|. +++++..|+.||
T Consensus 100 ~~~~~~~L~~l~s~i~~---~~~~~i~~~~~l~~~~~~l~---~~~~~~~A~~cl 148 (148)
T PF08389_consen 100 EELVKAALKCLKSWISW---IPIELIINSNLLNLIFQLLQ---SPELREAAAECL 148 (148)
T ss_dssp HHHHHHHHHHHHHHTTT---S-HHHHHSSSHHHHHHHHTT---SCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh---CCHHHhccHHHHHHHHHHcC---CHHHHHHHHHhC
Confidence 44444556666666653 22333444579999999994 567899999987
No 184
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=39.26 E-value=38 Score=27.87 Aligned_cols=41 Identities=22% Similarity=0.355 Sum_probs=30.1
Q ss_pred HHHHHHHHHHhcCchhHHHHh--ccHHHHHHHhhcCCChhHHHHH
Q psy1198 188 NACRALTYMMEALPRSSAVVL--DAVPTFLEKLQVIQCMDVAEQS 230 (249)
Q Consensus 188 eAArALTNIasgtp~qT~~VV--GAVPiL~~kLLsi~yiDVAEQA 230 (249)
++.+.|. ++...|+--..+| |+|+.|+. ||.-++.|++-.+
T Consensus 65 ~~Ik~l~-~La~~P~LYp~lv~l~~v~sL~~-LL~HeN~DIai~v 107 (108)
T PF08216_consen 65 EEIKKLS-VLATAPELYPELVELGAVPSLLG-LLSHENTDIAIDV 107 (108)
T ss_pred HHHHHHH-HccCChhHHHHHHHcCCHHHHHH-HHCCCCcceehcc
Confidence 3344554 4445788877788 99999998 7788999987543
No 185
>KOG4413|consensus
Probab=39.20 E-value=68 Score=32.08 Aligned_cols=75 Identities=16% Similarity=0.148 Sum_probs=48.1
Q ss_pred CCCCCCCCccChHHHHHHhcCCCCCccHHHHHHHHH---------HHHHhcCchhHHHHhccHHHHHHHhh---cCCChh
Q psy1198 158 EDTLTGFPVKQVVPALITLLSMDHNFDMMNNACRAL---------TYMMEALPRSSAVVLDAVPTFLEKLQ---VIQCMD 225 (249)
Q Consensus 158 ep~I~~fp~~glVP~LV~iLs~e~n~dLQ~eAArAL---------TNIasgtp~qT~~VVGAVPiL~~kLL---si~yiD 225 (249)
+..-.-+++.+++..+.+|+..-+.- .|+--|+| -||+++.|++.- -+.|+++++-+ ++++.|
T Consensus 245 eHgreflaQeglIdlicnIIsGadsd--Pfekfralmgfgkffgkeaimdvseeaic---ealiiaidgsfEmiEmnDpd 319 (524)
T KOG4413|consen 245 EHGREFLAQEGLIDLICNIISGADSD--PFEKFRALMGFGKFFGKEAIMDVSEEAIC---EALIIAIDGSFEMIEMNDPD 319 (524)
T ss_pred hhhhhhcchhhHHHHHHHHhhCCCCC--cHHHHHHHHHHHHHhcchHHhhcCHHHHH---HHHHHHHHhhHHhhhcCCch
Confidence 33333466777777777777654321 12333333 367888777643 56677776655 567899
Q ss_pred HHHHHHHHHHHh
Q psy1198 226 VAEQSLTALEML 237 (249)
Q Consensus 226 VAEQALwALenI 237 (249)
.-|-++-+||.+
T Consensus 320 aieaAiDalGil 331 (524)
T KOG4413|consen 320 AIEAAIDALGIL 331 (524)
T ss_pred HHHHHHHHHHhc
Confidence 999999999975
No 186
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=39.04 E-value=2.1e+02 Score=30.91 Aligned_cols=52 Identities=21% Similarity=0.204 Sum_probs=37.6
Q ss_pred HHHHHHHhcCchhHHHHh--ccHHHHHHHhh---cCCC----hhHHHHHHHHHHHhhhhch
Q psy1198 191 RALTYMMEALPRSSAVVL--DAVPTFLEKLQ---VIQC----MDVAEQSLTALEMLSRRHS 242 (249)
Q Consensus 191 rALTNIasgtp~qT~~VV--GAVPiL~~kLL---si~y----iDVAEQALwALenISgD~p 242 (249)
.=|.+.|.-.+..-..++ ++|++|++.|. ..+. .+++||.|..+|-|-.|-.
T Consensus 143 lkLL~~c~Kv~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL~IiE~ll~ea~ 203 (802)
T PF13764_consen 143 LKLLRYCCKVKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQLLEIIESLLSEAN 203 (802)
T ss_pred HHHHHHHHhhHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHHHHHHHHHHHHHh
Confidence 334444455566666676 99999999886 3344 7999999999998876544
No 187
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=38.14 E-value=97 Score=33.30 Aligned_cols=102 Identities=12% Similarity=0.205 Sum_probs=68.2
Q ss_pred HHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchhHHHHh--ccHHHHHHHhhcC
Q psy1198 144 QAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEALPRSSAVVL--DAVPTFLEKLQVI 221 (249)
Q Consensus 144 eAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~qT~~VV--GAVPiL~~kLLsi 221 (249)
.-|..+|-+.|...=..+ .-|..+++|.|.-||.+.| ..++-...--+-.|+.-.|+...+=- -.-=-|++ +|.+
T Consensus 665 sil~Ai~~I~sv~~~~~m-qpPi~~ilP~ltPILrnkh-~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd-~Lks 741 (975)
T COG5181 665 SILKAICSIYSVHRFRSM-QPPISGILPSLTPILRNKH-QKVVANTIALVGTICMNSPEYIGVREWMRICFELVD-SLKS 741 (975)
T ss_pred HHHHHHHHHhhhhccccc-CCchhhccccccHhhhhhh-HHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHH-HHHH
Confidence 345666666655321111 1245788999999998654 67777777788889998888533211 22233555 4455
Q ss_pred CChhHHHHHHHHHHHhhhh-chhHHhhc
Q psy1198 222 QCMDVAEQSLTALEMLSRR-HSKAILQA 248 (249)
Q Consensus 222 ~yiDVAEQALwALenISgD-~p~aIL~a 248 (249)
.+.+++--|..++|-||+- +|.+||..
T Consensus 742 ~nKeiRR~A~~tfG~Is~aiGPqdvL~~ 769 (975)
T COG5181 742 WNKEIRRNATETFGCISRAIGPQDVLDI 769 (975)
T ss_pred hhHHHHHhhhhhhhhHHhhcCHHHHHHH
Confidence 7889999999999999985 67777643
No 188
>KOG4524|consensus
Probab=37.89 E-value=64 Score=35.54 Aligned_cols=74 Identities=16% Similarity=0.265 Sum_probs=53.0
Q ss_pred ChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchhHHHHh----ccHHHHHHHhhcCCChhHHHHHHHHHHHhhhhchh
Q psy1198 168 QVVPALITLLSMDHNFDMMNNACRALTYMMEALPRSSAVVL----DAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRHSK 243 (249)
Q Consensus 168 glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~qT~~VV----GAVPiL~~kLLsi~yiDVAEQALwALenISgD~p~ 243 (249)
.+.-+.++||+++ +..+|..|--||-.....+..+-..+. -+-|.++++|..-. .=+-+-|++||+++..-+.+
T Consensus 803 kIl~r~~~~LS~e-~l~irvkaLdvl~~gl~~La~~~n~LlPlvhq~W~~vie~~~~k~-~L~v~~a~~~i~~m~~~sgD 880 (1014)
T KOG4524|consen 803 KILGRGIHLLSHE-SLRIRVKALDVLSLGLPLLATYHNLLLPLVHQTWPSVIECLLCKD-PLIVQRAFSCIEQMGKYSGD 880 (1014)
T ss_pred HHHHHHHHHhcch-hHHHHHHHHHHHHhccHHHhccchhHhHHHHhhhhHHHHHHhcCc-hHHHHHHHHHHHHHHHHhhh
Confidence 4445566677654 588899999999888888777765554 77899999998854 44667777777776554443
No 189
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=37.80 E-value=1.7e+02 Score=29.11 Aligned_cols=82 Identities=16% Similarity=0.272 Sum_probs=52.3
Q ss_pred cCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCCC--CCccHHHHHHHHHHHHHhcCchhHHHHhccHH
Q psy1198 135 AIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMD--HNFDMMNNACRALTYMMEALPRSSAVVLDAVP 212 (249)
Q Consensus 135 S~~D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~e--~n~dLQ~eAArALTNIasgtp~qT~~VVGAVP 212 (249)
+..|....+.+|+.|.++= .| ..+|.|..++..+ .+..+++.|.|||-.+++-.|+.+..+ ..|
T Consensus 500 ~~~~~~~~~~~LkaLgN~g----------~~--~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~~~v~~~--l~~ 565 (618)
T PF01347_consen 500 SRGDEEEKIVYLKALGNLG----------HP--ESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCPEKVREI--LLP 565 (618)
T ss_dssp HTT-HHHHHHHHHHHHHHT-----------G--GGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-HHHHHHH--HHH
T ss_pred hccCHHHHHHHHHHhhccC----------Cc--hhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcCcHHHHHH--HHH
Confidence 3357788888888888752 22 4899999988765 357889999999999988777665543 344
Q ss_pred HHHHHhhcCCChhHHHHHHHH
Q psy1198 213 TFLEKLQVIQCMDVAEQSLTA 233 (249)
Q Consensus 213 iL~~kLLsi~yiDVAEQALwA 233 (249)
+|.+ .-+..+|+=-|+..
T Consensus 566 I~~n---~~e~~EvRiaA~~~ 583 (618)
T PF01347_consen 566 IFMN---TTEDPEVRIAAYLI 583 (618)
T ss_dssp HHH----TTS-HHHHHHHHHH
T ss_pred HhcC---CCCChhHHHHHHHH
Confidence 4443 23344555444433
No 190
>KOG0212|consensus
Probab=37.29 E-value=74 Score=33.46 Aligned_cols=99 Identities=16% Similarity=0.246 Sum_probs=57.9
Q ss_pred HHHHHHHHHhcCCCHHHHHHHH-HHHHHHhhcCCCCC--CCCC----------------CccChHHHHHHhcCCCCCccH
Q psy1198 125 KAQQLLVSLQAIGDEDQQLQAV-VEMCQMLVMGNEDT--LTGF----------------PVKQVVPALITLLSMDHNFDM 185 (249)
Q Consensus 125 rl~~Ll~~L~S~~D~~~QLeAL-~eLrelLSmsnep~--I~~f----------------p~~glVP~LV~iLs~e~n~dL 185 (249)
.++++|..+.+. +...|+..+ ++|++=+-.+.+-+ -.+. -..++||..+.++.. .+..+
T Consensus 23 elEk~Vk~l~~~-~~~~~i~k~I~~L~~d~a~s~~~n~rkGgLiGlAA~~iaLg~~~~~Y~~~iv~Pv~~cf~D-~d~~v 100 (675)
T KOG0212|consen 23 ELEKLVKDLVNN-NDYDQIRKVISELAGDYAYSPHANMRKGGLIGLAAVAIALGIKDAGYLEKIVPPVLNCFSD-QDSQV 100 (675)
T ss_pred HHHHHHHHHHcc-CcHHHHHHHHHHHHHHhccCcccccccchHHHHHHHHHHhccccHHHHHHhhHHHHHhccC-cccee
Confidence 467788777663 555666444 44666444432211 0110 134788888888864 45788
Q ss_pred HHHHHHHHHHHHhcCchhHHHHh-ccHHHHHHHhhcCCChhH
Q psy1198 186 MNNACRALTYMMEALPRSSAVVL-DAVPTFLEKLQVIQCMDV 226 (249)
Q Consensus 186 Q~eAArALTNIasgtp~qT~~VV-GAVPiL~~kLLsi~yiDV 226 (249)
-+-||-.|+||+-+--...-+.- ...-+|| ||..-+...|
T Consensus 101 RyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~-klsaDsd~~V 141 (675)
T KOG0212|consen 101 RYYACESLYNIAKVAKGEVLVYFNEIFDVLC-KLSADSDQNV 141 (675)
T ss_pred eeHhHHHHHHHHHHhccCcccchHHHHHHHH-HHhcCCcccc
Confidence 99999999999986543332222 3344555 4664443333
No 191
>PF09384 UTP15_C: UTP15 C terminal; InterPro: IPR018983 This entry represents the C-terminal domain of the U3 small nucleolar RNA-associated protein 15 (UTP15). This protein is involved in nucleolar processing of pre-18S ribosomal RNA, and is required for optimal pre-ribosomal RNA transcription by RNA polymerase I together with a subset of U3 proteins required for transcription (t-UTPs). UTP15 is a component of the ribosomal small subunit (SSU) processome, which is a large ribonucleoprotein (RNP) required for processing of precursors to the small subunit RNA, the 18S, of the ribosome [, ]. This domain is found C-terminal to the WD40 repeat (IPR001680 from INTERPRO). UTP15 associates with U3 snoRNA, which is ubiquitous in eukaryotes and is required for nucleolar processing of pre-18S ribosomal RNA []. ; GO: 0006364 rRNA processing, 0005730 nucleolus
Probab=37.29 E-value=2.5e+02 Score=23.54 Aligned_cols=95 Identities=15% Similarity=0.167 Sum_probs=56.1
Q ss_pred CCHHHHHHHHHHHHH--HhhcCCCCCCCCCCccChHHHH---HHhcCCCCCccHHHHHHHHHHHHHhcCchhHHHHhccH
Q psy1198 137 GDEDQQLQAVVEMCQ--MLVMGNEDTLTGFPVKQVVPAL---ITLLSMDHNFDMMNNACRALTYMMEALPRSSAVVLDAV 211 (249)
Q Consensus 137 ~D~~~QLeAL~eLre--lLSmsnep~I~~fp~~glVP~L---V~iLs~e~n~dLQ~eAArALTNIasgtp~qT~~VVGAV 211 (249)
.+|...+.-++||.+ -|-.. +.+-....++|.| ++.+.++....+..+++.+|..|.+..-.+...|...+
T Consensus 46 ~~p~~~vavl~EL~~R~~L~~A----L~~Rde~~L~piL~Fl~k~i~~pr~~~~l~~v~~~ildiY~~~~~~s~~v~~~~ 121 (148)
T PF09384_consen 46 KSPEVVVAVLEELIRRGALRAA----LAGRDEESLEPILKFLIKNITDPRYTRILVDVANIILDIYSPVIGQSPEVDKLF 121 (148)
T ss_pred CChHHHHHHHHHHHHccHHHHH----HHhCCHHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 478887777788753 12111 1123334455544 33444455667777888888887764333333222666
Q ss_pred HHHHHHhhcCCChhHHHHHHHHHHHh
Q psy1198 212 PTFLEKLQVIQCMDVAEQSLTALEML 237 (249)
Q Consensus 212 PiL~~kLLsi~yiDVAEQALwALenI 237 (249)
-.|.+++.. -+++.++.+...|.|
T Consensus 122 ~~L~~~v~~--E~~~~~~l~~l~G~l 145 (148)
T PF09384_consen 122 QKLQRKVQE--ELQLQKELLELQGML 145 (148)
T ss_pred HHHHHHHHH--HHHHHHHHHHHHhHH
Confidence 666665543 578888888888775
No 192
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=36.78 E-value=56 Score=27.46 Aligned_cols=93 Identities=24% Similarity=0.293 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchhHHHHh---ccHHHHH
Q psy1198 139 EDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEALPRSSAVVL---DAVPTFL 215 (249)
Q Consensus 139 ~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~qT~~VV---GAVPiL~ 215 (249)
+.....++--+.++|...+++ | ...+-.+++-+=.+...+-...+..+|+.++-+.|+-+..+. |.++.|.
T Consensus 19 ~~~r~~a~v~l~k~l~~~~~~----~--~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l~ 92 (157)
T PF11701_consen 19 EEVRSHALVILSKLLDAAREE----F--KEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSELFLSEGFLESLL 92 (157)
T ss_dssp CCHHHHHHHHHHHHHHHHHHH----H--HHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHhHHH----H--HHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHHHH
Confidence 444444555555655222111 1 223333333322344566788999999999999999999988 8899998
Q ss_pred HHhh-cCCChhHHHHHHHHHHHhhhh
Q psy1198 216 EKLQ-VIQCMDVAEQSLTALEMLSRR 240 (249)
Q Consensus 216 ~kLL-si~yiDVAEQALwALenISgD 240 (249)
.+.. ..+..++. .++||-|+.-
T Consensus 93 ~~~~~~~~~~~~~---~~~lell~aA 115 (157)
T PF11701_consen 93 PLASRKSKDRKVQ---KAALELLSAA 115 (157)
T ss_dssp HHHH-CTS-HHHH---HHHHHHHHHH
T ss_pred HHHhcccCCHHHH---HHHHHHHHHH
Confidence 7443 13444333 3444555443
No 193
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=36.39 E-value=70 Score=34.77 Aligned_cols=52 Identities=21% Similarity=0.248 Sum_probs=39.0
Q ss_pred ChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchhHHHHh-ccHHHHHHHhhcCC
Q psy1198 168 QVVPALITLLSMDHNFDMMNNACRALTYMMEALPRSSAVVL-DAVPTFLEKLQVIQ 222 (249)
Q Consensus 168 glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~qT~~VV-GAVPiL~~kLLsi~ 222 (249)
.......++|++ ++.-+|.+||-||--++. .+|.+-++ --||...+|||+.+
T Consensus 499 ~aye~t~ncl~n-n~lpv~ieAalAlq~fi~--~~q~h~k~sahVp~tmekLLsLS 551 (970)
T COG5656 499 EAYENTHNCLKN-NHLPVMIEAALALQFFIF--NEQSHEKFSAHVPETMEKLLSLS 551 (970)
T ss_pred HHHHHHHHHHhc-CCcchhhhHHHHHHHHHh--chhhhHHHHhhhhHHHHHHHHhc
Confidence 444555677776 568899999999998887 44777777 66888888888654
No 194
>KOG1967|consensus
Probab=35.99 E-value=91 Score=34.42 Aligned_cols=104 Identities=19% Similarity=0.202 Sum_probs=67.2
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCCCCC--ccHHHHHHHHHHHHHhcCchhH
Q psy1198 127 QQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHN--FDMMNNACRALTYMMEALPRSS 204 (249)
Q Consensus 127 ~~Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~e~n--~dLQ~eAArALTNIasgtp~qT 204 (249)
+=|++.|.= .|...++..++-+..+|... +++..--.+.+||.|..+=+.++| .-+-..|-.||.-+.+.+|.-.
T Consensus 912 PLLLq~Ls~-~D~~v~vstl~~i~~~l~~~--~tL~t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~ 988 (1030)
T KOG1967|consen 912 PLLLQALSM-PDVIVRVSTLRTIPMLLTES--ETLQTEHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKS 988 (1030)
T ss_pred HHHHHhcCC-CccchhhhHhhhhhHHHHhc--cccchHHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcc
Confidence 445677755 58888898888887777663 444433357899999987655443 4456777889999999777442
Q ss_pred -HHHh-ccHHHHHHHhhcCCChhHHHHHHHHH
Q psy1198 205 -AVVL-DAVPTFLEKLQVIQCMDVAEQSLTAL 234 (249)
Q Consensus 205 -~~VV-GAVPiL~~kLLsi~yiDVAEQALwAL 234 (249)
.-.. ..|..|. |-|+-+---|++||+.+=
T Consensus 989 l~~fr~~Vl~al~-k~LdDkKRlVR~eAv~tR 1019 (1030)
T KOG1967|consen 989 LLSFRPLVLRALI-KILDDKKRLVRKEAVDTR 1019 (1030)
T ss_pred cccccHHHHHHhh-hccCcHHHHHHHHHHHHh
Confidence 1112 3444444 234445566888887663
No 195
>KOG0414|consensus
Probab=35.27 E-value=61 Score=36.43 Aligned_cols=98 Identities=15% Similarity=0.210 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCCC---CCccHHHHHHHHHHHHHhcCchhHHHHhccHHHHH
Q psy1198 139 EDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMD---HNFDMMNNACRALTYMMEALPRSSAVVLDAVPTFL 215 (249)
Q Consensus 139 ~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~e---~n~dLQ~eAArALTNIasgtp~qT~~VVGAVPiL~ 215 (249)
++.-.+.+..+||.=....|..+ ...|+|.++++.+++ .+|+||.-|.-||.-+|....+-+. -..|.|.
T Consensus 894 eDd~~d~i~~icE~eLl~gek~l----Lg~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~fce---s~l~llf 966 (1251)
T KOG0414|consen 894 EDDLADLISGICEKELLYGEKSL----LGRFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEFCE---SHLPLLF 966 (1251)
T ss_pred chhHHHHHHHHHHHHHhcChHHH----HHHHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHHHH---HHHHHHH
Confidence 34456677777764333333332 357888888888654 4799999999999999987776554 4677777
Q ss_pred HHhhcCCChhHHHHHHHHHHHhhhhchh
Q psy1198 216 EKLQVIQCMDVAEQSLTALEMLSRRHSK 243 (249)
Q Consensus 216 ~kLLsi~yiDVAEQALwALenISgD~p~ 243 (249)
.-|-.++.+-|+--++-+|+-++=..|.
T Consensus 967 timeksp~p~IRsN~VvalgDlav~fpn 994 (1251)
T KOG0414|consen 967 TIMEKSPSPRIRSNLVVALGDLAVRFPN 994 (1251)
T ss_pred HHHhcCCCceeeecchheccchhhhccc
Confidence 6555577777777777777666655543
No 196
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=34.98 E-value=7.2 Score=30.18 Aligned_cols=21 Identities=38% Similarity=0.514 Sum_probs=18.0
Q ss_pred ccHHHHHHHhhcCCChhHHHH
Q psy1198 209 DAVPTFLEKLQVIQCMDVAEQ 229 (249)
Q Consensus 209 GAVPiL~~kLLsi~yiDVAEQ 229 (249)
.|.|.||+-|.+..+.+||+-
T Consensus 62 ~AF~~F~~aL~~~~~~~LA~l 82 (84)
T cd08326 62 QAFPAFLSALRETGQTDLAEL 82 (84)
T ss_pred HHHHHHHHHHHhcCchHHHHH
Confidence 688999999988888898873
No 197
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=34.34 E-value=2.4e+02 Score=30.23 Aligned_cols=87 Identities=18% Similarity=0.239 Sum_probs=54.8
Q ss_pred CHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCCCC--------------------CccHHHHHHHHH----
Q psy1198 138 DEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDH--------------------NFDMMNNACRAL---- 193 (249)
Q Consensus 138 D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~e~--------------------n~dLQ~eAArAL---- 193 (249)
||+..--||.+||+..--+. + ..+.-++..+|.+|- |.-+.--|..||
T Consensus 444 ~p~skEraLe~LC~fIEDce------y--~~I~vrIL~iLG~EgP~a~~P~~yvrhIyNR~iLEN~ivRsaAv~aLskf~ 515 (898)
T COG5240 444 DPDSKERALEVLCTFIEDCE------Y--HQITVRILGILGREGPRAKTPGKYVRHIYNRLILENNIVRSAAVQALSKFA 515 (898)
T ss_pred CchHHHHHHHHHHHHHhhcc------h--hHHHHHHHHHhcccCCCCCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 67666678899998664321 1 234445555555431 233444567788
Q ss_pred HHHHhcCchhHHHHhccHHHHHHHhhcCCChhHHHHHHHHHHHhh
Q psy1198 194 TYMMEALPRSSAVVLDAVPTFLEKLQVIQCMDVAEQSLTALEMLS 238 (249)
Q Consensus 194 TNIasgtp~qT~~VVGAVPiL~~kLLsi~yiDVAEQALwALenIS 238 (249)
.|+-|.+..++ |..++.|.++-.+.+|++.|-.+|++|=
T Consensus 516 ln~~d~~~~~s------v~~~lkRclnD~DdeVRdrAsf~l~~~~ 554 (898)
T COG5240 516 LNISDVVSPQS------VENALKRCLNDQDDEVRDRASFLLRNMR 554 (898)
T ss_pred cCccccccHHH------HHHHHHHHhhcccHHHHHHHHHHHHhhh
Confidence 56666544443 3455556777788999999999999874
No 198
>KOG0743|consensus
Probab=33.15 E-value=21 Score=36.00 Aligned_cols=19 Identities=42% Similarity=0.768 Sum_probs=15.8
Q ss_pred eeccCCCCCchhhhhhhcc
Q psy1198 39 TLYGAPGGGKAATLYAQSG 57 (249)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~ 57 (249)
-|||.||.||..-+.|-.+
T Consensus 239 LLYGPPGTGKSS~IaAmAn 257 (457)
T KOG0743|consen 239 LLYGPPGTGKSSFIAAMAN 257 (457)
T ss_pred eeeCCCCCCHHHHHHHHHh
Confidence 5999999999988777544
No 199
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=32.58 E-value=31 Score=25.48 Aligned_cols=21 Identities=43% Similarity=0.605 Sum_probs=16.6
Q ss_pred CCccceeccCCCCCchhhhhh
Q psy1198 34 GGKAATLYGAPGGGKAATLYA 54 (249)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~ 54 (249)
.++...++|.||.||...+..
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~ 38 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARA 38 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHH
Confidence 456788999999999876543
No 200
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=32.53 E-value=88 Score=26.27 Aligned_cols=80 Identities=18% Similarity=0.120 Sum_probs=50.6
Q ss_pred hhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCC-----CCCccHHHHHHHHHHH
Q psy1198 121 DTATKAQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSM-----DHNFDMMNNACRALTY 195 (249)
Q Consensus 121 ~~~~rl~~Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~-----e~n~dLQ~eAArALTN 195 (249)
+...-++.|...|++ .++..|+.||.-|--+......+--..|-...|+..|+++++. ..+++++-...-.|..
T Consensus 35 ~~k~a~rai~krl~~-~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~ 113 (139)
T cd03567 35 GPQLAVRLLAHKIQS-PQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYS 113 (139)
T ss_pred cHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHH
Confidence 334456777778887 4888888888766554444332222345567899999999963 1346666666555555
Q ss_pred HHhcCc
Q psy1198 196 MMEALP 201 (249)
Q Consensus 196 Iasgtp 201 (249)
-.+.++
T Consensus 114 W~~~f~ 119 (139)
T cd03567 114 WTLELP 119 (139)
T ss_pred HHHHhc
Confidence 555554
No 201
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=32.29 E-value=21 Score=27.21 Aligned_cols=20 Identities=30% Similarity=0.629 Sum_probs=12.2
Q ss_pred CCCccceeccCCCCCchhhh
Q psy1198 33 QGGKAATLYGAPGGGKAATL 52 (249)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~ 52 (249)
|..+.-.+||.||.||...+
T Consensus 2 ~~~~~~~i~G~~G~GKT~~~ 21 (131)
T PF13401_consen 2 QSQRILVISGPPGSGKTTLI 21 (131)
T ss_dssp -----EEEEE-TTSSHHHHH
T ss_pred CCCcccEEEcCCCCCHHHHH
Confidence 45667789999999998765
No 202
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=32.15 E-value=83 Score=24.06 Aligned_cols=34 Identities=18% Similarity=0.181 Sum_probs=22.5
Q ss_pred HHHHHHhhcCCChhHHHHHHHHHHHhhhhchhHH
Q psy1198 212 PTFLEKLQVIQCMDVAEQSLTALEMLSRRHSKAI 245 (249)
Q Consensus 212 PiL~~kLLsi~yiDVAEQALwALenISgD~p~aI 245 (249)
-+|..-+.+.++.||.|..|.|+.+|-..++..|
T Consensus 20 ~Pf~~i~~~~~~~~vre~il~ci~qil~~~~~~i 53 (86)
T PF09324_consen 20 KPFEYIMSNNPSIDVRELILECILQILQSRGENI 53 (86)
T ss_pred HHHHHHHhccCcHHHHHHHHHHHHHHHHHhHHHH
Confidence 3455433455678888888888888777666543
No 203
>KOG1465|consensus
Probab=31.75 E-value=3e+02 Score=27.09 Aligned_cols=89 Identities=8% Similarity=0.243 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCCC----------CCccHHHHHHHHHHHHHhcCchh-----
Q psy1198 139 EDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMD----------HNFDMMNNACRALTYMMEALPRS----- 203 (249)
Q Consensus 139 ~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~e----------~n~dLQ~eAArALTNIasgtp~q----- 203 (249)
-+..++.++..|+.|-.. +|. +|.+..++.++.+++..| ++++.+. -|.++....++.
T Consensus 49 ~n~Li~~vr~~g~~L~~A-~ps--E~~~gNiirrIlkliReE~~~l~~~~~s~~s~~~~----Sl~kLl~~~~e~~~~~~ 121 (353)
T KOG1465|consen 49 ANDLIESVRDVGKKLHAA-QPS--ELSCGNIIRRILKLIREEVLELTGGATSDESSPSE----SLHKLLQSTEESHTNKK 121 (353)
T ss_pred HHHHHHHHHHHHHHhhhc-CCc--hhhhhHHHHHHHHHHHHHHHHHhccCCCCCCchHH----HHHHHHhCCCccccccc
Confidence 455678899999998765 344 477788999999888642 2333333 788998888862
Q ss_pred --------HH-HHhccHHHHHHHhhcCCChhHHHHHHHHHH
Q psy1198 204 --------SA-VVLDAVPTFLEKLQVIQCMDVAEQSLTALE 235 (249)
Q Consensus 204 --------T~-~VVGAVPiL~~kLLsi~yiDVAEQALwALe 235 (249)
-+ .++..|.-|+.-|-. ...++++|++.-|-
T Consensus 122 ~S~~~~~~lr~~~i~~I~eli~Eie~-~~E~Ia~Qa~ehih 161 (353)
T KOG1465|consen 122 LSSADAKKLRKDLIEGIKELITEIEG-SRENIAVQAIEHIH 161 (353)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHhh-hhHhHHHHHHHHhc
Confidence 11 222445555543433 35788888876553
No 204
>PF10193 Telomere_reg-2: Telomere length regulation protein; InterPro: IPR019337 This entry represents a conserved domain found in a group of proteins called telomere-length regulation, or clock abnormal protein-2, which are conserved from plants to humans. These proteins regulate telomere length and contribute to silencing of sub-telomeric regions []. In vitro the protein binds to telomeric DNA repeats. ; PDB: 3O4Z_B.
Probab=31.63 E-value=1e+02 Score=24.86 Aligned_cols=90 Identities=17% Similarity=0.113 Sum_probs=43.0
Q ss_pred HHHHHHHHhcCC-CHHHHHHHHHHHHHHhhcCCCCCC-CC--CCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCc
Q psy1198 126 AQQLLVSLQAIG-DEDQQLQAVVEMCQMLVMGNEDTL-TG--FPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEALP 201 (249)
Q Consensus 126 l~~Ll~~L~S~~-D~~~QLeAL~eLrelLSmsnep~I-~~--fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp 201 (249)
++++++.|++++ |+...-.||..+-+++-.. +.. .+ .....++..|+++=++-+.+++...=-.||.-++-..|
T Consensus 5 lrDll~~L~~~~~~~e~~e~aL~~a~~LIR~k--~~fg~el~~~a~eL~~~Ll~L~~~f~~~~Fe~~R~~alval~v~~P 82 (114)
T PF10193_consen 5 LRDLLEYLRSDDEDYEKFEAALKSAEKLIRRK--PDFGTELSEYAEELLKALLHLQNKFDIENFEELRQNALVALVVAAP 82 (114)
T ss_dssp HHHHHHHHT------S-SHHHHHHHHHHHHS-------SSHHHHHHHHHHHHHH---TT--TTTTHHHHHHHHHHHHHSG
T ss_pred HHHHHHHHhcCcCCHHHHHHHHHHHHHHHhcC--CCCcchHHHHHHHHHHHHhhccccCCccCHHHHHHHHHHHHHHHhh
Confidence 678889998643 5666667777777766442 220 01 11224455555533322334444444556777777667
Q ss_pred hhHHHHhccHHHHHHHhhcCCC
Q psy1198 202 RSSAVVLDAVPTFLEKLQVIQC 223 (249)
Q Consensus 202 ~qT~~VVGAVPiL~~kLLsi~y 223 (249)
.++ .|.|++.+.+.+|
T Consensus 83 ~~~------~~~L~~~f~~~~~ 98 (114)
T PF10193_consen 83 EKV------APYLTEEFFSGDY 98 (114)
T ss_dssp GGH------HH-HHHHHTTS--
T ss_pred HHH------HHHHHHHHhcCCC
Confidence 654 4678876666443
No 205
>KOG1222|consensus
Probab=31.58 E-value=1.9e+02 Score=30.50 Aligned_cols=76 Identities=24% Similarity=0.246 Sum_probs=59.3
Q ss_pred CCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchhHHHHh--ccHHHHHHHhhcCCChhHHHHHHHHHHHhhhhc
Q psy1198 164 FPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEALPRSSAVVL--DAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRH 241 (249)
Q Consensus 164 fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~qT~~VV--GAVPiL~~kLLsi~yiDVAEQALwALenISgD~ 241 (249)
+....+|..||+.|++. |.++-.....-|-. .+.+-+.-.+.+ |.|..|+ ||..+++.|+..-.|.-|=|+|=|+
T Consensus 300 MrrkniV~mLVKaLdr~-n~~Ll~lv~~FLkK-LSIf~eNK~~M~~~~iveKL~-klfp~~h~dL~~~tl~LlfNlSFD~ 376 (791)
T KOG1222|consen 300 MRRKNIVAMLVKALDRS-NSSLLTLVIKFLKK-LSIFDENKIVMEQNGIVEKLL-KLFPIQHPDLRKATLMLLFNLSFDS 376 (791)
T ss_pred HHHHhHHHHHHHHHccc-chHHHHHHHHHHHH-hhhhccchHHHHhccHHHHHH-HhcCCCCHHHHHHHHHHhhhccccc
Confidence 55568999999999985 46665555555543 355556665555 9999999 6999999999999999999999876
Q ss_pred h
Q psy1198 242 S 242 (249)
Q Consensus 242 p 242 (249)
.
T Consensus 377 g 377 (791)
T KOG1222|consen 377 G 377 (791)
T ss_pred c
Confidence 5
No 206
>PLN03025 replication factor C subunit; Provisional
Probab=30.84 E-value=25 Score=32.32 Aligned_cols=19 Identities=37% Similarity=0.634 Sum_probs=15.9
Q ss_pred cceeccCCCCCchhhhhhh
Q psy1198 37 AATLYGAPGGGKAATLYAQ 55 (249)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~ 55 (249)
.--+||.||.||..+.++-
T Consensus 36 ~lll~Gp~G~GKTtla~~l 54 (319)
T PLN03025 36 NLILSGPPGTGKTTSILAL 54 (319)
T ss_pred eEEEECCCCCCHHHHHHHH
Confidence 4679999999999887753
No 207
>KOG4653|consensus
Probab=30.81 E-value=1.5e+02 Score=32.71 Aligned_cols=78 Identities=14% Similarity=0.118 Sum_probs=59.0
Q ss_pred hHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCc
Q psy1198 122 TATKAQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEALP 201 (249)
Q Consensus 122 ~~~rl~~Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp 201 (249)
.-+++++.+..+.+ +.+..+-.++++|+.++-.- ..-+.+....++..+.+.|++++ +=+=+-|.+.++-++|..|
T Consensus 725 ~~e~~qeai~sl~d-~qvpik~~gL~~l~~l~e~r--~~~~~~~~ekvl~i~ld~Lkded-syvyLnaI~gv~~Lcevy~ 800 (982)
T KOG4653|consen 725 DIEPLQEAISSLHD-DQVPIKGYGLQMLRHLIEKR--KKATLIQGEKVLAIALDTLKDED-SYVYLNAIRGVVSLCEVYP 800 (982)
T ss_pred cHHHHHHHHHHhcC-CcccchHHHHHHHHHHHHhc--chhhhhhHHHHHHHHHHHhcccC-ceeeHHHHHHHHHHHHhcc
Confidence 34567777878877 46677888999999998642 23233445789999999998764 6667889999999999888
Q ss_pred hh
Q psy1198 202 RS 203 (249)
Q Consensus 202 ~q 203 (249)
+.
T Consensus 801 e~ 802 (982)
T KOG4653|consen 801 ED 802 (982)
T ss_pred hh
Confidence 74
No 208
>cd08785 CARD_CARD9-like Caspase activation and recruitment domain of CARD9 and related proteins. Caspase activation and recruitment domain (CARD) found in CARD9, CARD14 (CARMA2), CARD10 (CARMA3), CARD11 (CARMA1) and BCL10. BCL10 (B-cell lymphoma 10), together with Malt1 (mucosa-associated lymphoid tissue-lymphoma-translocation gene 1), are integral components of the CBM signalosome. They associate with CARD9 to form M-CBM (CBM complex in myeloid immune cells), and with CARD11 to form L-CBM (CBM complex in lymphoid immune cells), which mediates activation of NF-kB and MAPK by ITAM-coupled receptors expressed on immune cells. BCL10/Malt1 also associates with CARD10, which is more widely expressed and is not restricted to hematopoietic cells, to play a role in GPCR-induced NF-kB activation. CARD14 has also been shown to associate with BCL10. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inf
Probab=30.72 E-value=59 Score=25.42 Aligned_cols=72 Identities=17% Similarity=0.213 Sum_probs=39.4
Q ss_pred HHHHHHHHHhhcCCCCCCCCCCccChHHHHH--HhcCCCCCccHHH--------HHHHHHHHHHhcCchhHHHHhccHHH
Q psy1198 144 QAVVEMCQMLVMGNEDTLTGFPVKQVVPALI--TLLSMDHNFDMMN--------NACRALTYMMEALPRSSAVVLDAVPT 213 (249)
Q Consensus 144 eAL~eLrelLSmsnep~I~~fp~~glVP~LV--~iLs~e~n~dLQ~--------eAArALTNIasgtp~qT~~VVGAVPi 213 (249)
++|+..|..|... +.++.+.|-|. .+|..++..+++- .=|+.|-+|..--+. .|.|.
T Consensus 3 ~~L~~~R~~L~~~-------l~~~~l~d~L~q~~VLt~~d~EeI~~~~t~~~r~~ka~~LLdiL~~rG~------~Af~~ 69 (86)
T cd08785 3 EALEGMRHRLTRK-------INPSRLTPYLRQCKVLDEQDEEEVLSSPRLPIRANRTGRLLDILATRGK------RGYVA 69 (86)
T ss_pred HHHHHHHHHHHHH-------hhHHHHHHHHHhcCCCCHHHHHHHhCCCccccHHHHHHHHHHHHHhcCc------chHHH
Confidence 4566666666553 44455666666 3454433223321 223444444432221 68899
Q ss_pred HHHHhhcCCChhHHHH
Q psy1198 214 FLEKLQVIQCMDVAEQ 229 (249)
Q Consensus 214 L~~kLLsi~yiDVAEQ 229 (249)
||+-|.. .|.+|++.
T Consensus 70 F~~aL~~-~yp~L~~~ 84 (86)
T cd08785 70 FLESLEF-YYPELYTL 84 (86)
T ss_pred HHHHHHH-hCHHHHHH
Confidence 9998854 59999875
No 209
>KOG4535|consensus
Probab=30.71 E-value=1.5e+02 Score=31.14 Aligned_cols=69 Identities=16% Similarity=0.262 Sum_probs=53.6
Q ss_pred hHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchhH------HHHhccHHHHHHHhhcCCChhHHHHHHHHHHHhhhhc
Q psy1198 169 VVPALITLLSMDHNFDMMNNACRALTYMMEALPRSS------AVVLDAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRH 241 (249)
Q Consensus 169 lVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~qT------~~VVGAVPiL~~kLLsi~yiDVAEQALwALenISgD~ 241 (249)
+-..|+.+|..|..+.+--..-.||.|+.+.+|-.- ..|+|-|..++ .+.+..|+--+|..||.|-+-+
T Consensus 107 ~~r~l~~~l~~e~~~~~~tq~~kcla~lv~~~p~~~l~~~~~~~~~~~ik~~i----~~~d~~v~vs~l~~~~~~v~t~ 181 (728)
T KOG4535|consen 107 LHRCLLLALVAESSSQTVTQIIKCLANLVSNAPYDRLKLSLLTKVWNQIKPYI----RHKDVNVRVSSLTLLGAIVSTH 181 (728)
T ss_pred HHHHHHHHHHHhcCchhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHh----hcCCCChhhHHHHHHHHHHhcC
Confidence 345677788888889998999999999999999763 22226555555 5578899999999999997765
No 210
>PF07923 N1221: N1221-like protein; InterPro: IPR012486 The sequences featured in this family are similar to a hypothetical protein product of ORF N1221 in the CPT1-SPC98 intergenic region of the yeast genome (P53917 from SWISSPROT). This encodes an acidic polypeptide with several possible transmembrane regions [].
Probab=30.60 E-value=1e+02 Score=28.49 Aligned_cols=55 Identities=20% Similarity=0.218 Sum_probs=40.7
Q ss_pred CCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchhH-------HHHh---------ccHHHHHHHhh
Q psy1198 164 FPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEALPRSS-------AVVL---------DAVPTFLEKLQ 219 (249)
Q Consensus 164 fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~qT-------~~VV---------GAVPiL~~kLL 219 (249)
.-...+|..+++-|... +.+..++|+|||.||+-|.-..+ +.+. |++++|++.|.
T Consensus 56 ~~~~~~i~~ll~~L~~~-~~~~R~~al~~LlYi~~G~~~~~~s~~~ql~~i~~N~~lL~~~g~~~~l~~~L~ 126 (293)
T PF07923_consen 56 DQRKDFIEKLLDQLESS-DSEDRLEALRALLYIAQGTWGETASEEEQLQWIRRNVFLLYECGGFPALWELLK 126 (293)
T ss_pred hhHHHHHHHHHHhcccc-chhhHHHHHHHHHHHHcCCccccCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 44568999999999865 57778999999999998875443 2221 78888887443
No 211
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=30.60 E-value=91 Score=24.22 Aligned_cols=62 Identities=15% Similarity=0.301 Sum_probs=41.6
Q ss_pred ChHHHHHHhcCCCCC---ccHHHHHHHHHHHHHhcCchhHHHHh--ccHHHHHHHhhcCCChhHHHHHHHHH
Q psy1198 168 QVVPALITLLSMDHN---FDMMNNACRALTYMMEALPRSSAVVL--DAVPTFLEKLQVIQCMDVAEQSLTAL 234 (249)
Q Consensus 168 glVP~LV~iLs~e~n---~dLQ~eAArALTNIasgtp~qT~~VV--GAVPiL~~kLLsi~yiDVAEQALwAL 234 (249)
.++..+.++|+...+ .++...+-.|+....+-.| ...++ .-++.+++ ++. ..++.|.|+.||
T Consensus 82 ~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~~--~~~i~~~~~l~~~~~-~l~--~~~~~~~A~~cl 148 (148)
T PF08389_consen 82 DILEILSQILSQSSSEANEELVKAALKCLKSWISWIP--IELIINSNLLNLIFQ-LLQ--SPELREAAAECL 148 (148)
T ss_dssp HHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTTS---HHHHHSSSHHHHHHH-HTT--SCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHhCC--HHHhccHHHHHHHHH-HcC--CHHHHHHHHHhC
Confidence 345555555554332 7888889999999988444 33344 78999987 553 456788888886
No 212
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=30.42 E-value=38 Score=20.51 Aligned_cols=21 Identities=19% Similarity=0.199 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHhhhhchhHHh
Q psy1198 226 VAEQSLTALEMLSRRHSKAIL 246 (249)
Q Consensus 226 VAEQALwALenISgD~p~aIL 246 (249)
|++.|.|+|++|--+..-..|
T Consensus 1 VR~~Aa~aLg~igd~~ai~~L 21 (27)
T PF03130_consen 1 VRRAAARALGQIGDPRAIPAL 21 (27)
T ss_dssp HHHHHHHHHGGG-SHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHH
Confidence 578899999998765444433
No 213
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=29.94 E-value=51 Score=30.52 Aligned_cols=105 Identities=18% Similarity=0.160 Sum_probs=62.3
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCCCC---CccHHHHHHHHHHHHHhcCchh
Q psy1198 127 QQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDH---NFDMMNNACRALTYMMEALPRS 203 (249)
Q Consensus 127 ~~Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~e~---n~dLQ~eAArALTNIasgtp~q 203 (249)
...+..+.... ...++++..|-+.++... ..+.+|..|-+.+.... ++-+++.+|.++.+ ++..+.
T Consensus 52 ~~vl~ei~~~~--~~~l~av~~la~y~~~~~-------~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~--~~~~~~ 120 (290)
T PF04733_consen 52 DSVLSEIKKSS--SPELQAVRLLAEYLSSPS-------DKESALEELKELLADQAGESNEIVQLLAATILFH--EGDYEE 120 (290)
T ss_dssp HHHHHHS-TTS--SCCCHHHHHHHHHHCTST-------THHCHHHHHHHCCCTS---CHHHHHHHHHHHHCC--CCHHHH
T ss_pred hHHHHHhccCC--ChhHHHHHHHHHHHhCcc-------chHHHHHHHHHHHHhccccccHHHHHHHHHHHHH--cCCHHH
Confidence 33444554322 334556666666665421 13566777777775442 45567777776643 554554
Q ss_pred HHHHh------ccHHHHHHHhhcCCChhHHHHHHHHHHHhhhhch
Q psy1198 204 SAVVL------DAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRHS 242 (249)
Q Consensus 204 T~~VV------GAVPiL~~kLLsi~yiDVAEQALwALenISgD~p 242 (249)
.-.+. -.+-..|+-++.+.-.|+|++-+..+..+..|..
T Consensus 121 AL~~l~~~~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~ 165 (290)
T PF04733_consen 121 ALKLLHKGGSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSI 165 (290)
T ss_dssp HHCCCTTTTCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHH
T ss_pred HHHHHHccCcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHH
Confidence 33333 3445566678888999999999988888776644
No 214
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=29.72 E-value=1.4e+02 Score=27.39 Aligned_cols=106 Identities=18% Similarity=0.166 Sum_probs=53.2
Q ss_pred HHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCC-CCCccHH---HHHHHHHHHHHhcCchhHHH
Q psy1198 131 VSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSM-DHNFDMM---NNACRALTYMMEALPRSSAV 206 (249)
Q Consensus 131 ~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~-e~n~dLQ---~eAArALTNIasgtp~qT~~ 206 (249)
..|.+ +|+...-.|+.-|.++|..-..+.+. ..-|..|++|+.. =++.... +.++.+|.++-...++....
T Consensus 6 ~~Lts-ed~~~R~ka~~~Ls~vL~~lp~~~L~----~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~~~~~~~~~~ 80 (262)
T PF14500_consen 6 EYLTS-EDPIIRAKALELLSEVLERLPPDFLS----RQEVQVLLDFFCSRLDDHACVQPALKGLLALVKMKNFSPESAVK 80 (262)
T ss_pred hhhCC-CCHHHHHHHHHHHHHHHHhCCHhhcc----HHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCcCCChhhHHH
Confidence 45777 58888888999999999875433332 2335555555432 1122333 45555555444433333222
Q ss_pred HhccHHHHHHHhh-cCCChhHHHHHHHHHHHhhhhchhH
Q psy1198 207 VLDAVPTFLEKLQ-VIQCMDVAEQSLTALEMLSRRHSKA 244 (249)
Q Consensus 207 VVGAVPiL~~kLL-si~yiDVAEQALwALenISgD~p~a 244 (249)
++ -.|.++.. ..---..+-++.+.|..+-..+..+
T Consensus 81 i~---~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~ 116 (262)
T PF14500_consen 81 IL---RSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREA 116 (262)
T ss_pred HH---HHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHH
Confidence 22 12221000 0112345566667777666655443
No 215
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=29.46 E-value=5.7e+02 Score=26.61 Aligned_cols=111 Identities=13% Similarity=0.059 Sum_probs=70.0
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCC-CCCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchh
Q psy1198 125 KAQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLT-GFPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEALPRS 203 (249)
Q Consensus 125 rl~~Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~-~fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~q 203 (249)
=++.++..+.. +++...-..|..+..+...+.-++.. .=+.......+-+.+ -.+.-..+++|-.+.+-.|++
T Consensus 442 lW~~l~~~~~~-~~~~la~~lL~~~~~l~~l~~~~~~~~~~~~~~~~~~~N~~~-----~~~~~~~~~il~rls~~~~~~ 515 (727)
T PF12726_consen 442 LWKALLKSLDS-DNPDLAKALLKSLSPLIGLEKFPPKKEKDELDPAKTQFNKSL-----GQITDLISQILERLSDFDPSH 515 (727)
T ss_pred HHHHHHHhhcC-CChHHHHHHHHHHHHhccccccCCcccccCcchHHHHHHHHH-----HHHHHHHHHHHHHHhcCCHHH
Confidence 35666666765 46665545555555555554333322 000112222222222 244456788999999999999
Q ss_pred HHHHh---ccHHHHHHHhhcCCChhHHHHHHHHHHHhhhhch
Q psy1198 204 SAVVL---DAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRHS 242 (249)
Q Consensus 204 T~~VV---GAVPiL~~kLLsi~yiDVAEQALwALenISgD~p 242 (249)
-..+. .++-.++. |+=+++.|+.+-|+..|..+.+...
T Consensus 516 L~~l~~d~~~~~~i~s-~lfsp~~~l~qaA~~llk~~~d~~~ 556 (727)
T PF12726_consen 516 LKELLSDPDAAQAIWS-LLFSPDDDLYQAAQDLLKQAFDVDG 556 (727)
T ss_pred HHHHHcCcchhhHHHh-heeCCChHHHHHHHHHHHHHhcCCc
Confidence 88888 77777776 5556899999999999999886543
No 216
>PF03542 Tuberin: Tuberin; InterPro: IPR018515 Initiation of eukaryotic mRNA transcription requires melting of promoter DNA with the help of the general transcription factors TFIIE and TFIIH. In higher eukaryotes, the general transcription factor TFIIE consists of two subunits: the large alpha subunit (IPR002853 from INTERPRO) and the small beta (IPR003166 from INTERPRO). TFIIE beta has been found to bind to the region where the promoter starts to open to be single-stranded upon transcription initiation by RNA polymerase II. The approximately 120-residue central core domain of TFIIE beta plays a role in double-stranded DNA binding of TFIIE []. The TFIIE beta central core DNA-binding domain consists of three helices with a beta hairpin at the C terminus, resembling the winged helix proteins. It shows a novel double-stranded DNA-binding activity where the DNA-binding surface locates on the opposite side to the previously reported winged helix motif by forming a positively charged furrow []. This domain is found in Tuberin proteins. ; GO: 0005096 GTPase activator activity, 0043547 positive regulation of GTPase activity
Probab=28.76 E-value=3.8e+02 Score=26.07 Aligned_cols=12 Identities=25% Similarity=0.260 Sum_probs=5.9
Q ss_pred cHHHHHHHHHHH
Q psy1198 184 DMMNNACRALTY 195 (249)
Q Consensus 184 dLQ~eAArALTN 195 (249)
.-|-+-.+||.+
T Consensus 234 ~~qd~iV~~l~~ 245 (356)
T PF03542_consen 234 QEQDEIVRALES 245 (356)
T ss_pred hHHHHHHHHHHH
Confidence 334455555544
No 217
>KOG1222|consensus
Probab=27.98 E-value=2.7e+02 Score=29.38 Aligned_cols=102 Identities=17% Similarity=0.208 Sum_probs=64.3
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchhHHHHh-
Q psy1198 130 LVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEALPRSSAVVL- 208 (249)
Q Consensus 130 l~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~qT~~VV- 208 (249)
|..|.- +....+..+..+-+-||+=.|.-++ +-..++|..|+++...+| ||+-...-+-|.|+.=-+- --...|
T Consensus 310 VKaLdr--~n~~Ll~lv~~FLkKLSIf~eNK~~-M~~~~iveKL~klfp~~h-~dL~~~tl~LlfNlSFD~g-lr~KMv~ 384 (791)
T KOG1222|consen 310 VKALDR--SNSSLLTLVIKFLKKLSIFDENKIV-MEQNGIVEKLLKLFPIQH-PDLRKATLMLLFNLSFDSG-LRPKMVN 384 (791)
T ss_pred HHHHcc--cchHHHHHHHHHHHHhhhhccchHH-HHhccHHHHHHHhcCCCC-HHHHHHHHHHhhhcccccc-ccHHHhh
Confidence 445543 2344566777777888874433332 445689999999998764 8998888888888743222 223334
Q ss_pred -ccHHHHHHHhhcCC-ChhHHHHHHHHHHHhhhh
Q psy1198 209 -DAVPTFLEKLQVIQ-CMDVAEQSLTALEMLSRR 240 (249)
Q Consensus 209 -GAVPiL~~kLLsi~-yiDVAEQALwALenISgD 240 (249)
|-+|.|.. |+..+ +-.+ |+..|-.||-|
T Consensus 385 ~GllP~l~~-ll~~d~~~~i---A~~~lYh~S~d 414 (791)
T KOG1222|consen 385 GGLLPHLAS-LLDSDTKHGI---ALNMLYHLSCD 414 (791)
T ss_pred ccchHHHHH-HhCCcccchh---hhhhhhhhccC
Confidence 99999997 66543 3333 45555555543
No 218
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=27.71 E-value=27 Score=27.01 Aligned_cols=12 Identities=50% Similarity=0.977 Sum_probs=9.7
Q ss_pred eeccCCCCCchh
Q psy1198 39 TLYGAPGGGKAA 50 (249)
Q Consensus 39 ~~~~~~~~~~~~ 50 (249)
-+||.||.||.-
T Consensus 2 ~i~G~~G~GKS~ 13 (107)
T PF00910_consen 2 WIYGPPGIGKST 13 (107)
T ss_pred EEECCCCCCHHH
Confidence 479999999964
No 219
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=27.61 E-value=28 Score=34.56 Aligned_cols=20 Identities=55% Similarity=0.855 Sum_probs=15.5
Q ss_pred CCccceeccCCCCCchhhhhhh
Q psy1198 34 GGKAATLYGAPGGGKAATLYAQ 55 (249)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~ 55 (249)
--|..-|||.||.|| ||.|.
T Consensus 184 PPKGVLLYGPPGTGK--TLLAk 203 (406)
T COG1222 184 PPKGVLLYGPPGTGK--TLLAK 203 (406)
T ss_pred CCCceEeeCCCCCcH--HHHHH
Confidence 346788999999999 55554
No 220
>KOG1789|consensus
Probab=27.31 E-value=3.7e+02 Score=31.21 Aligned_cols=93 Identities=18% Similarity=0.205 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCC-CC----ccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchhHHHHh--ccHHH
Q psy1198 141 QQLQAVVEMCQMLVMGNEDTLTG-FP----VKQVVPALITLLSMDHNFDMMNNACRALTYMMEALPRSSAVVL--DAVPT 213 (249)
Q Consensus 141 ~QLeAL~eLrelLSmsnep~I~~-fp----~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~qT~~VV--GAVPi 213 (249)
....+|..|+++++. +|-+.. |- .-+..|.|+..|.....+++|..|-..| |++-.+-++...++ +.+-.
T Consensus 1741 ~v~m~LtAL~Nli~~--nPdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi-~~~Tan~~Cv~~~a~~~vL~~ 1817 (2235)
T KOG1789|consen 1741 KVLMTLTALANLVSA--NPDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVI-LLATANKECVTDLATCNVLTT 1817 (2235)
T ss_pred HHHHHHHHHHHHHhh--CcchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHH-HHHhcccHHHHHHHhhhHHHH
Confidence 344588999999877 565543 32 2266778888888777899999887665 45555666666666 87788
Q ss_pred HHHHhhcCCChhHHHHHHHHHHHhh
Q psy1198 214 FLEKLQVIQCMDVAEQSLTALEMLS 238 (249)
Q Consensus 214 L~~kLLsi~yiDVAEQALwALenIS 238 (249)
|++ |+.+ -.-.+|-+|..|--++
T Consensus 1818 LL~-lLHS-~PS~R~~vL~vLYAL~ 1840 (2235)
T KOG1789|consen 1818 LLT-LLHS-QPSMRARVLDVLYALS 1840 (2235)
T ss_pred HHH-HHhc-ChHHHHHHHHHHHHHh
Confidence 887 4443 2446677776665544
No 221
>cd08323 CARD_APAF1 Caspase activation and recruitment domain similar to that found in Apoptotic Protease-Activating Factor 1. Caspase activation and recruitment domain (CARD) similar to that found in apoptotic protease-activating factor 1 (APAF-1), which is an activator of caspase-9. APAF-1 contains WD-40 repeats, a CARD, and an ATPase domain. Upon stimulation, APAF-1, together with caspase-9, forms the heptameric 'apoptosome', which leads to the processing and activation of caspase-9, starting a caspase cascade which leads to apoptosis. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effect
Probab=27.11 E-value=67 Score=25.07 Aligned_cols=22 Identities=23% Similarity=0.095 Sum_probs=19.1
Q ss_pred ccHHHHHHHhhcCCChhHHHHH
Q psy1198 209 DAVPTFLEKLQVIQCMDVAEQS 230 (249)
Q Consensus 209 GAVPiL~~kLLsi~yiDVAEQA 230 (249)
.|.|.||+-|.+..|.+|||--
T Consensus 60 ~Af~~F~~aL~~~~~~~La~lL 81 (86)
T cd08323 60 HAYVSFYNALLHEGYKDLALLL 81 (86)
T ss_pred HHHHHHHHHHHhcCChHHHHHH
Confidence 7899999999887899999853
No 222
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=27.07 E-value=4.4e+02 Score=24.66 Aligned_cols=88 Identities=14% Similarity=0.124 Sum_probs=63.6
Q ss_pred HHHHHHHHhhcCCCCCCC-CCCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchhHHHHh--ccHHHHHHHhhcC
Q psy1198 145 AVVEMCQMLVMGNEDTLT-GFPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEALPRSSAVVL--DAVPTFLEKLQVI 221 (249)
Q Consensus 145 AL~eLrelLSmsnep~I~-~fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~qT~~VV--GAVPiL~~kLLsi 221 (249)
||+-|.=++.. .|+-. -|-....+..|+.+|+....+.+|-.+-.+|-.++=-.|..+..+- +.+.++|..|...
T Consensus 111 aL~vLQGl~LL--Hp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~llk~~ 188 (257)
T PF08045_consen 111 ALRVLQGLCLL--HPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLLKSK 188 (257)
T ss_pred HHHHHHHHHHc--CchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHHccc
Confidence 44555444444 33333 2666788999999997767899999999999999999999999888 9999999744432
Q ss_pred -CChhHHHHHHHHH
Q psy1198 222 -QCMDVAEQSLTAL 234 (249)
Q Consensus 222 -~yiDVAEQALwAL 234 (249)
...+|.=.|+.-|
T Consensus 189 ~~~~~~r~K~~EFL 202 (257)
T PF08045_consen 189 STDRELRLKCIEFL 202 (257)
T ss_pred cccHHHhHHHHHHH
Confidence 2355555555544
No 223
>KOG2153|consensus
Probab=27.01 E-value=3.3e+02 Score=29.10 Aligned_cols=111 Identities=14% Similarity=0.148 Sum_probs=66.6
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCC-------------------------
Q psy1198 125 KAQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSM------------------------- 179 (249)
Q Consensus 125 rl~~Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~------------------------- 179 (249)
++-.+...|-+ ||..-+..+.++++++- +.+|.+-.+..-.+++.|..|+-.
T Consensus 193 kIA~l~s~lle--nPE~N~~~L~~l~eml~-s~n~~~~Kl~~lSLlaVFKDIiP~YkIR~lte~Ek~~k~sKev~klr~y 269 (704)
T KOG2153|consen 193 KIASLCSKLLE--NPEENLKKLKELFEMLD-SQNPKAKKLALLSLLAVFKDIIPGYKIRPLTEKEKRTKLSKEVLKLREY 269 (704)
T ss_pred HHHHHHHHHHh--CHHHHHHHHHHHHHHHh-hhchHHHHHHHHHHHHHHHhhcccceecccHHHHhcccccHHHHHHHHH
Confidence 33344444543 68888888888888873 334545445555667777766632
Q ss_pred ---------------------C-CCccHHH----HHHHHHHHHHhcCchhHHHHhccHHHHHHHhhcCCChhHHHHHHHH
Q psy1198 180 ---------------------D-HNFDMMN----NACRALTYMMEALPRSSAVVLDAVPTFLEKLQVIQCMDVAEQSLTA 233 (249)
Q Consensus 180 ---------------------e-~n~dLQ~----eAArALTNIasgtp~qT~~VVGAVPiL~~kLLsi~yiDVAEQALwA 233 (249)
. .....|. .|-+|+.-|.+..|.-.-. -..|-.++ ++.+.++--+..+|+++
T Consensus 270 E~~Ll~~Yk~ylQkLe~~vK~~~~~~~~~v~l~~vav~c~~~Ll~a~pHFN~~-~kiv~l~v-r~in~~~~~~s~~~i~t 347 (704)
T KOG2153|consen 270 EQALLKQYKSYLQKLEQFVKDLSLRTPQQVSLAQVAVQCACELLEAVPHFNLR-QKIVKLVV-RLINDPGRPVSSGCIQT 347 (704)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHHHHHHhhhhccHH-HHHHHHHH-HhhcCCCCchHHHHHHH
Confidence 0 0011122 6777877777766644211 13333333 56666788899999999
Q ss_pred HHHhhhh
Q psy1198 234 LEMLSRR 240 (249)
Q Consensus 234 LenISgD 240 (249)
+.++..+
T Consensus 348 ~k~lf~~ 354 (704)
T KOG2153|consen 348 IKTLFEN 354 (704)
T ss_pred HHHHhcC
Confidence 9987654
No 224
>KOG1062|consensus
Probab=26.85 E-value=1.1e+02 Score=33.37 Aligned_cols=74 Identities=14% Similarity=0.007 Sum_probs=54.7
Q ss_pred ChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchhHHHHhccHHHHHHHhhcCCChhHHHHHHHHHHHhhhhchhH
Q psy1198 168 QVVPALITLLSMDHNFDMMNNACRALTYMMEALPRSSAVVLDAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRHSKA 244 (249)
Q Consensus 168 glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~qT~~VVGAVPiL~~kLLsi~yiDVAEQALwALenISgD~p~a 244 (249)
.++--+++.|++|-+-.-||.-|-||+-+.-..+..+.. ++-..+++|+...+.-|+-.|+.|+-++.+..|.-
T Consensus 103 dvllLltNslknDL~s~nq~vVglAL~alg~i~s~Emar---dlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l 176 (866)
T KOG1062|consen 103 DLLLLLTNSLKNDLNSSNQYVVGLALCALGNICSPEMAR---DLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDL 176 (866)
T ss_pred HHHHHHHHHHHhhccCCCeeehHHHHHHhhccCCHHHhH---HhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchH
Confidence 344556677777767777888888888887777666553 33344556776688899999999999999888763
No 225
>KOG2956|consensus
Probab=26.68 E-value=5.6e+02 Score=26.53 Aligned_cols=56 Identities=18% Similarity=0.197 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHhcCchhH-HHHh-ccHHHHHHHhhcCCChhHHHHHHHHHHHhhhhc
Q psy1198 185 MMNNACRALTYMMEALPRSS-AVVL-DAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRH 241 (249)
Q Consensus 185 LQ~eAArALTNIasgtp~qT-~~VV-GAVPiL~~kLLsi~yiDVAEQALwALenISgD~ 241 (249)
.-..+..++|-|++..+... .-+| ...|.+++ =.++..-+|+--||.||=-|-..-
T Consensus 422 ~~~~~iKm~Tkl~e~l~~EeL~~ll~diaP~~iq-ay~S~SS~VRKtaVfCLVamv~~v 479 (516)
T KOG2956|consen 422 RAVAVIKMLTKLFERLSAEELLNLLPDIAPCVIQ-AYDSTSSTVRKTAVFCLVAMVNRV 479 (516)
T ss_pred HHHHHHHHHHHHHhhcCHHHHHHhhhhhhhHHHH-HhcCchHHhhhhHHHhHHHHHHHH
Confidence 33456679999999988765 4444 99999997 666777899999999986654433
No 226
>KOG4535|consensus
Probab=26.65 E-value=49 Score=34.46 Aligned_cols=95 Identities=19% Similarity=0.260 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhc--CchhHHHHh-ccHHHHHHHh
Q psy1198 142 QLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEA--LPRSSAVVL-DAVPTFLEKL 218 (249)
Q Consensus 142 QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasg--tp~qT~~VV-GAVPiL~~kL 218 (249)
.+++|-.+.++|---.++....+ .++-+..++..--.+++..+|-.||-+|-|+++- +|-|+.... -+.|+||+.+
T Consensus 504 avraLgnllQvlq~i~~~~~~e~-~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~~F~~L~~Lv 582 (728)
T KOG4535|consen 504 AVRALGNLLQFLQPIEKPTFAEI-IEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPLQTAPWASQAFNALTSLV 582 (728)
T ss_pred HHHHHhhHHHHHHHhhhccHHHH-HHHHHHhcccceecccccccchHHHHHHHHhhcCccccccCCCchHHHHHHHHHHH
Confidence 45666666666642112222222 2344444444444568899999999999999973 444555555 7789999866
Q ss_pred hcCCChhHHHHHHHHHHHh
Q psy1198 219 QVIQCMDVAEQSLTALEML 237 (249)
Q Consensus 219 Lsi~yiDVAEQALwALenI 237 (249)
.+-.+..|+-||--+|--.
T Consensus 583 ~~~~NFKVRi~AA~aL~vp 601 (728)
T KOG4535|consen 583 TSCKNFKVRIRAAAALSVP 601 (728)
T ss_pred HHhccceEeehhhhhhcCC
Confidence 6777788888888777543
No 227
>PF05327 RRN3: RNA polymerase I specific transcription initiation factor RRN3; InterPro: IPR007991 This family consists of several eukaryotic proteins which are homologous to the Saccharomyces cerevisiae RRN3 protein. RRN3 is one of the RRN genes specifically required for the transcription of rDNA by RNA polymerase I (Pol I) in the S. cerevisiae [] RNA polymerase I complex within the nucleolus. In mammalian cells, the phosphorylation state of Rrn3 regulates rDNA transcription by determining the steady-state concentration of the Rrn3 [].; PDB: 3TJ1_B.
Probab=26.64 E-value=5e+02 Score=26.36 Aligned_cols=113 Identities=17% Similarity=0.210 Sum_probs=63.8
Q ss_pred hHHHHHHHHHHH-hcCC----CHHHHH-HHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCC-CCCccHHHHHHHHHH
Q psy1198 122 TATKAQQLLVSL-QAIG----DEDQQL-QAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSM-DHNFDMMNNACRALT 194 (249)
Q Consensus 122 ~~~rl~~Ll~~L-~S~~----D~~~QL-eAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~-e~n~dLQ~eAArALT 194 (249)
...++++|+..+ ...+ +...++ .=|.+|+...+.- +.- ...+|..++++ .+ ..++++.-.=..-|.
T Consensus 27 d~~~Y~~L~~~l~~~~~~~d~~~~~~l~~~L~~L~~~Vs~L-----d~~-~~~LV~ail~~-~W~~~~~~~v~~y~~Fl~ 99 (563)
T PF05327_consen 27 DSSQYDELVEQLSDPSESKDAISVSQLIRWLKALSSCVSLL-----DSS-CKQLVEAILSL-NWLGRDEDFVEAYIQFLI 99 (563)
T ss_dssp --HHHHHHHHHHHS-TT-TTS--HHHHHHHHHHHHHGGGGG------SC-CHHHHHHHHT--TGGGS-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHcccccCcccccHHHHHHHHHHHHHHHHHh-----hhH-HHHHHHHHHcC-CCCCCCHHHHHHHHHHHH
Confidence 346788888888 2211 122344 3457777766663 222 47888888877 55 456777777777899
Q ss_pred HHHhcCchhHHHHhccHHHHHHHhhcC-------------CChhHHHHHHHHHHHhhhhchhH
Q psy1198 195 YMMEALPRSSAVVLDAVPTFLEKLQVI-------------QCMDVAEQSLTALEMLSRRHSKA 244 (249)
Q Consensus 195 NIasgtp~qT~~VVGAVPiL~~kLLsi-------------~yiDVAEQALwALenISgD~p~a 244 (249)
|+++..+.....|+ -.||+.+... .-..+-+++..+|.+|.+-.|.+
T Consensus 100 ~Lvsa~~~yl~~vl---~~LV~~f~p~~~~~~~~~~~~~~~~~~~~~~vH~~L~~Il~lvP~s 159 (563)
T PF05327_consen 100 NLVSAQPKYLSPVL---SMLVKNFIPPPSSIAEWPGCPPEKRREIYERVHDALQKILRLVPTS 159 (563)
T ss_dssp HHHHH-GGGHHHHH---HHHHHGGGS-HHHHHH---------------HHHHHHHHHHH-GGG
T ss_pred HHHHhhHHHHHHHH---HHHHHhccCCCccccccchhhhhhhhhhHHHHHHHHHHHHHHcCCC
Confidence 99998888776554 3444333221 12334467889999999888876
No 228
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=26.23 E-value=1.6e+02 Score=34.59 Aligned_cols=102 Identities=9% Similarity=0.139 Sum_probs=65.0
Q ss_pred CHHHHHHHHHHHHHHhhc--CCCCCCCCCC-ccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchhHHHHhccHHHH
Q psy1198 138 DEDQQLQAVVEMCQMLVM--GNEDTLTGFP-VKQVVPALITLLSMDHNFDMMNNACRALTYMMEALPRSSAVVLDAVPTF 214 (249)
Q Consensus 138 D~~~QLeAL~eLrelLSm--snep~I~~fp-~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~qT~~VVGAVPiL 214 (249)
+....+.|+.-||++-.+ +.++ +..|. ...|+..|..++++..+++++....+|+.+|...-... +.-.-+.+
T Consensus 1150 n~~va~fAidsLrQLs~kfle~eE-L~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~~n---IkSGWktI 1225 (1780)
T PLN03076 1150 NLSIAIFAMDSLRQLSMKFLEREE-LANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVNN---VKSGWKSM 1225 (1780)
T ss_pred chhHHHHHHHHHHHHHHHhcchhh-hhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhh---hhcCcHHH
Confidence 455666666655542211 2233 23322 35799999999998888999999999999998854432 22111111
Q ss_pred HHHh---hcCCChhHHHHHHHHHHHhhhhchh
Q psy1198 215 LEKL---QVIQCMDVAEQSLTALEMLSRRHSK 243 (249)
Q Consensus 215 ~~kL---Lsi~yiDVAEQALwALenISgD~p~ 243 (249)
..-| ...++.++.+.+.++|..|..|+-.
T Consensus 1226 F~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~ 1257 (1780)
T PLN03076 1226 FMVFTTAAYDDHKNIVLLAFEIIEKIIREYFP 1257 (1780)
T ss_pred HHHHHHHHhCccHHHHHHHHHHHHHHHHhhhh
Confidence 1111 1245788999999999999887544
No 229
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=26.23 E-value=2e+02 Score=24.13 Aligned_cols=71 Identities=17% Similarity=0.161 Sum_probs=45.5
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchhHHHH
Q psy1198 128 QLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEALPRSSAVV 207 (249)
Q Consensus 128 ~Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~qT~~V 207 (249)
.+...++| +++..+-.++.-+...... ..+ +.+...+...+ .+.+.-+|.-.+|+|-.+.-..|+.+...
T Consensus 124 ~~~~W~~s-~~~w~rR~~~v~~~~~~~~------~~~--~~~l~~~~~~~-~d~~~~vq~ai~w~L~~~~~~~~~~v~~~ 193 (213)
T PF08713_consen 124 LLEKWAKS-DNEWVRRAAIVMLLRYIRK------EDF--DELLEIIEALL-KDEEYYVQKAIGWALREIGKKDPDEVLEF 193 (213)
T ss_dssp HHHHHHHC-SSHHHHHHHHHCTTTHGGG------CHH--HHHHHHHHHCT-TGS-HHHHHHHHHHHHHHCTT-HHHHHHH
T ss_pred HHHHHHhC-CcHHHHHHHHHHHHHHHHh------cCH--HHHHHHHHHHc-CCchHHHHHHHHHHHHHHHHhCHHHHHHH
Confidence 34456677 5888887777665544333 001 22333333333 34568899999999999999999998877
Q ss_pred h
Q psy1198 208 L 208 (249)
Q Consensus 208 V 208 (249)
+
T Consensus 194 l 194 (213)
T PF08713_consen 194 L 194 (213)
T ss_dssp H
T ss_pred H
Confidence 7
No 230
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=26.01 E-value=1.1e+02 Score=26.99 Aligned_cols=103 Identities=15% Similarity=0.075 Sum_probs=62.1
Q ss_pred CCHHHHHHHHHHHHHHhhcCCCCCCCC-CCcc--ChHHHHHHhcCCC--CCccHHHHHHHHHHHHHhcCchhHHH---Hh
Q psy1198 137 GDEDQQLQAVVEMCQMLVMGNEDTLTG-FPVK--QVVPALITLLSMD--HNFDMMNNACRALTYMMEALPRSSAV---VL 208 (249)
Q Consensus 137 ~D~~~QLeAL~eLrelLSmsnep~I~~-fp~~--glVP~LV~iLs~e--~n~dLQ~eAArALTNIasgtp~qT~~---VV 208 (249)
..+..+|-+++-+|++.+- ++.... +... .+...+..+.... ++..+|.-+|..+.|++-..-..... -+
T Consensus 122 ~~~~~~ml~lR~l~NlF~~--~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~ 199 (268)
T PF08324_consen 122 SPPANQMLALRLLANLFSH--PPGRQLLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQS 199 (268)
T ss_dssp SSHHHHHHHHHHHHHHTTS--CCCHHHHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHH
T ss_pred CcHHHHHHHHHHHHHhhCC--CccHHHHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHH
Confidence 3678889999999998864 222221 1111 2333333333321 27899999999999997654433310 00
Q ss_pred ccHHHHHHHh-hcCCChhHHHHHHHHHHHhhhhc
Q psy1198 209 DAVPTFLEKL-QVIQCMDVAEQSLTALEMLSRRH 241 (249)
Q Consensus 209 GAVPiL~~kL-Lsi~yiDVAEQALwALenISgD~ 241 (249)
..+..+++-+ ....+.|..=.+|-|||++.-..
T Consensus 200 ~ll~~i~~~~~~~~~d~Ea~~R~LvAlGtL~~~~ 233 (268)
T PF08324_consen 200 ELLSSIIEVLSREESDEEALYRLLVALGTLLSSS 233 (268)
T ss_dssp HHHHHHHHHCHCCHTSHHHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHHHhccccCCHHHHHHHHHHHHHHhccC
Confidence 2333334312 23368999999999999988433
No 231
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=25.99 E-value=2.5e+02 Score=26.72 Aligned_cols=77 Identities=21% Similarity=0.286 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHhhcCCCCCCC-CCCccChHHHHHHhcCC---------CCCccHHHHHHHHHHHHHhcCchhHHHHh-cc
Q psy1198 142 QLQAVVEMCQMLVMGNEDTLT-GFPVKQVVPALITLLSM---------DHNFDMMNNACRALTYMMEALPRSSAVVL-DA 210 (249)
Q Consensus 142 QLeAL~eLrelLSmsnep~I~-~fp~~glVP~LV~iLs~---------e~n~dLQ~eAArALTNIasgtp~qT~~VV-GA 210 (249)
.|..+.++-+-|.. ||.|. ..-...++|.++.||-. +++-.|.-.||+.|.+|+.-++.....+- -.
T Consensus 233 ~L~~lm~~v~ALl~--N~~l~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~y~~l~~ri 310 (343)
T cd08050 233 LLIYLMRMVRALLD--NPNLHLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTSYNTLQPRI 310 (343)
T ss_pred HHHHHHHHHHHHhc--CCCCchHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCCCCcHHHHH
Confidence 34444444444433 66665 23345799999988832 23468899999999999998888766555 44
Q ss_pred HHHHHHHhhc
Q psy1198 211 VPTFLEKLQV 220 (249)
Q Consensus 211 VPiL~~kLLs 220 (249)
+-.|++-|++
T Consensus 311 ~~tl~k~l~d 320 (343)
T cd08050 311 TRTLLKALLD 320 (343)
T ss_pred HHHHHHHHcC
Confidence 4466666664
No 232
>KOG1248|consensus
Probab=25.57 E-value=5.8e+02 Score=29.06 Aligned_cols=106 Identities=10% Similarity=0.042 Sum_probs=65.1
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCC---CCCccHHHHHHHHHHHHHhcCc-
Q psy1198 126 AQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSM---DHNFDMMNNACRALTYMMEALP- 201 (249)
Q Consensus 126 l~~Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~---e~n~dLQ~eAArALTNIasgtp- 201 (249)
+-+++....+..+...|..+-+-|.+++.. |+...+ +...+-.+-+.|.. .-..-.|..++-||--|.+..|
T Consensus 655 l~~v~~~~e~~~~~~vQkK~yrlL~~l~~~---~s~~~~-~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~ 730 (1176)
T KOG1248|consen 655 LFTVDPEFENSSSTKVQKKAYRLLEELSSS---PSGEGL-VEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSA 730 (1176)
T ss_pred HHHhhHHhhccccHHHHHHHHHHHHHHhcC---CchhhH-HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccH
Confidence 335555544434778888887777777766 443333 34444444444432 1234568999999999999999
Q ss_pred hhHHHHhccHHHHHHHhhcCCC---hhHHHHHHHHHHH
Q psy1198 202 RSSAVVLDAVPTFLEKLQVIQC---MDVAEQSLTALEM 236 (249)
Q Consensus 202 ~qT~~VVGAVPiL~~kLLsi~y---iDVAEQALwALen 236 (249)
+.+..+.-+||-.+ .++...+ -..|.|||..+++
T Consensus 731 e~~~~i~k~I~EvI-L~~Ke~n~~aR~~Af~lL~~i~~ 767 (1176)
T KOG1248|consen 731 EHCDLIPKLIPEVI-LSLKEVNVKARRNAFALLVFIGA 767 (1176)
T ss_pred HHHHHHHHHHHHHH-HhcccccHHHHhhHHHHHHHHHH
Confidence 55555556676665 2333333 3456777777774
No 233
>PF03810 IBN_N: Importin-beta N-terminal domain; InterPro: IPR001494 Karyopherins are a group of proteins involved in transporting molecules through the pores of the nuclear envelope. Karyopherins, which may act as importins or exportins, are part of the Importin-beta super-family, which all share a similar three-dimensional structure. Members of the importin-beta (karyopherin-beta) family can bind and transport cargo by themselves, or can form heterodimers with importin-alpha. As part of a heterodimer, importin-beta mediates interactions with the pore complex, while importin-alpha acts as an adaptor protein to bind the nuclear localisation signal (NLS) on the cargo through the classical NLS import of proteins. Importin-beta is a helicoidal molecule constructed from 19 HEAT repeats. Many nuclear pore proteins contain FG sequence repeats that can bind to HEAT repeats within importins [, ], which is important for importin-beta mediated transport. Ran GTPase helps to control the unidirectional transfer of cargo. The cytoplasm contains primarily RanGDP and the nucleus RanGTP through the actions of RanGAP and RanGEF, respectively. In the nucleus, RanGTP binds to importin-beta within the importin/cargo complex, causing a conformational change in importin-beta that releases it from importin-alpha-bound cargo. As a result, the N-terminal auto-inhibitory region on importin-alpha is free to loop back and bind to the major NLS-binding site, causing the cargo to be released []. There are additional release factors as well. This entry represents the N-terminal domain of karyopherins that is important for the binding of the Ran protein []. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport; PDB: 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 1IBR_D 1QGR_A 3LWW_A 1F59_A 2Q5D_A ....
Probab=25.47 E-value=2.2e+02 Score=19.97 Aligned_cols=33 Identities=15% Similarity=0.135 Sum_probs=26.9
Q ss_pred ChHHHHHHhcC-CCCCccHHHHHHHHHHHHHhcC
Q psy1198 168 QVVPALITLLS-MDHNFDMMNNACRALTYMMEAL 200 (249)
Q Consensus 168 glVP~LV~iLs-~e~n~dLQ~eAArALTNIasgt 200 (249)
+|+..|+++|. ...++.+.+.|+=.|-|...-.
T Consensus 14 ~~~~~l~~il~~~~~~~~~R~~A~i~LKn~I~~~ 47 (77)
T PF03810_consen 14 GFWQYLLQILSSNSQDPEVRQLAAILLKNLIKKN 47 (77)
T ss_dssp CHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHc
Confidence 78999999994 4448999999999998877643
No 234
>PF06012 DUF908: Domain of Unknown Function (DUF908); InterPro: IPR010309 This is a domain of unknown function found at the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately N-terminal to another domain of unknown function: IPR010314 from INTERPRO.
Probab=25.41 E-value=1.7e+02 Score=27.44 Aligned_cols=51 Identities=31% Similarity=0.454 Sum_probs=40.9
Q ss_pred hHHHHHHhcCCCC--CccHHHHHHHHHHHHHhcCchhHHHHh--------ccHHHHHHHhh
Q psy1198 169 VVPALITLLSMDH--NFDMMNNACRALTYMMEALPRSSAVVL--------DAVPTFLEKLQ 219 (249)
Q Consensus 169 lVP~LV~iLs~e~--n~dLQ~eAArALTNIasgtp~qT~~VV--------GAVPiL~~kLL 219 (249)
|+-.|+++|..++ ..++|..|-++|+-|+.--+....++- |.+|.++++..
T Consensus 266 l~~eL~eLi~~~~~v~~~i~~~Al~~L~ai~~~~~~~~~V~~aLg~~v~HGiL~~llR~~v 326 (329)
T PF06012_consen 266 LVNELVELISPEEKVPMDIQTAALRALEAISHKRPRCSDVLRALGANVSHGILPQLLRKCV 326 (329)
T ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhccccHHHHHHHhcCCCCcccHHHHHHHHH
Confidence 9999999998754 578999999999999997776655332 88888887654
No 235
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=25.02 E-value=36 Score=32.77 Aligned_cols=15 Identities=47% Similarity=0.862 Sum_probs=13.6
Q ss_pred ceeccCCCCCchhhh
Q psy1198 38 ATLYGAPGGGKAATL 52 (249)
Q Consensus 38 ~~~~~~~~~~~~~~~ 52 (249)
..+||.||.||.++.
T Consensus 45 ~~iyG~~GTGKT~~~ 59 (366)
T COG1474 45 IIIYGPTGTGKTATV 59 (366)
T ss_pred EEEECCCCCCHhHHH
Confidence 889999999998875
No 236
>PF14222 MOR2-PAG1_N: Cell morphogenesis N-terminal
Probab=24.97 E-value=61 Score=33.07 Aligned_cols=57 Identities=16% Similarity=0.247 Sum_probs=42.9
Q ss_pred HHHHHHHhcCchhHHHHh---ccHHHHHHHhhcCCChhHHHHHHHHHHHhhhhch--hHHhhc
Q psy1198 191 RALTYMMEALPRSSAVVL---DAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRHS--KAILQA 248 (249)
Q Consensus 191 rALTNIasgtp~qT~~VV---GAVPiL~~kLLsi~yiDVAEQALwALenISgD~p--~aIL~a 248 (249)
+-+....+..|+....-+ ..|-+|++ ..-..+.+|++-|..+|.+|+++.| ..++..
T Consensus 450 ~Lf~t~i~aiPrcL~~~i~~~~lielL~R-~tvHvd~~I~~~A~~aLk~la~~~p~~~~vi~~ 511 (552)
T PF14222_consen 450 DLFRTCIQAIPRCLPSSIPFKSLIELLCR-GTVHVDPNIRESAAQALKRLARDKPNRQQVITG 511 (552)
T ss_pred HHHHHHHHHccccCCCCCcHHHHHHHHhc-ccccCCHHHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 556677777787765554 77888885 6666788999999999999999974 334443
No 237
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=24.90 E-value=1.9e+02 Score=25.51 Aligned_cols=21 Identities=14% Similarity=-0.061 Sum_probs=17.8
Q ss_pred CCCccHHHHHHHHHHHHHhcC
Q psy1198 180 DHNFDMMNNACRALTYMMEAL 200 (249)
Q Consensus 180 e~n~dLQ~eAArALTNIasgt 200 (249)
+.++..++.+.|+|.|++.-.
T Consensus 121 ~~~~~~~ml~lR~l~NlF~~~ 141 (268)
T PF08324_consen 121 SSPPANQMLALRLLANLFSHP 141 (268)
T ss_dssp TSSHHHHHHHHHHHHHHTTSC
T ss_pred CCcHHHHHHHHHHHHHhhCCC
Confidence 457889999999999999843
No 238
>KOG2259|consensus
Probab=24.81 E-value=66 Score=34.45 Aligned_cols=72 Identities=17% Similarity=0.151 Sum_probs=54.6
Q ss_pred CCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchhHHHHhccHHHHHHHhhcCCChhHHHHHHHHHHHhhhh
Q psy1198 164 FPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEALPRSSAVVLDAVPTFLEKLQVIQCMDVAEQSLTALEMLSRR 240 (249)
Q Consensus 164 fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~qT~~VVGAVPiL~~kLLsi~yiDVAEQALwALenISgD 240 (249)
++..|-.=+||+=|.. +-.++-.-|.-.|..++--.|... |-++-.|++ +++-++.||+++|+.+|-.||..
T Consensus 369 iI~sGACGA~VhGlED-Ef~EVR~AAV~Sl~~La~ssP~FA---~~aldfLvD-MfNDE~~~VRL~ai~aL~~Is~~ 440 (823)
T KOG2259|consen 369 IIPSGACGALVHGLED-EFYEVRRAAVASLCSLATSSPGFA---VRALDFLVD-MFNDEIEVVRLKAIFALTMISVH 440 (823)
T ss_pred cccccccceeeeechH-HHHHHHHHHHHHHHHHHcCCCCcH---HHHHHHHHH-HhccHHHHHHHHHHHHHHHHHHH
Confidence 5567888888988864 346777777777877777666433 267888998 55558999999999999999864
No 239
>KOG4646|consensus
Probab=24.74 E-value=2.2e+02 Score=25.25 Aligned_cols=106 Identities=11% Similarity=0.102 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCC--CCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchh
Q psy1198 126 AQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTG--FPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEALPRS 203 (249)
Q Consensus 126 l~~Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~--fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~q 203 (249)
++.+|+..+...+...+-+-+-.|.+.- -||+.. +..-.++..||..|+ +.|..|...+.-.|-|+|- -+..
T Consensus 18 lq~LV~efq~tt~~eakeqv~ANLANFA----YDP~Nys~Lrql~vLdlFvdsl~-e~ne~LvefgIgglCNlC~-d~~n 91 (173)
T KOG4646|consen 18 LQHLVDEFQTTTNIEAKEQVTANLANFA----YDPINYSHLRQLDVLDLFVDSLE-EQNELLVEFGIGGLCNLCL-DKTN 91 (173)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhc----cCcchHHHHHHhhHHHHHHHHhh-cccHHHHHHhHHHHHhhcc-ChHH
Q ss_pred HHHHh--ccHHHHHHHhhcCCChhHHHHHHHHHHHhh
Q psy1198 204 SAVVL--DAVPTFLEKLQVIQCMDVAEQSLTALEMLS 238 (249)
Q Consensus 204 T~~VV--GAVPiL~~kLLsi~yiDVAEQALwALenIS 238 (249)
...|+ +.||..+ +-++++...+.--++-+|-.++
T Consensus 92 ~~~I~ea~g~plii-~~lssp~e~tv~sa~~~l~~l~ 127 (173)
T KOG4646|consen 92 AKFIREALGLPLII-FVLSSPPEITVHSAALFLQLLE 127 (173)
T ss_pred HHHHHHhcCCceEE-eecCCChHHHHHHHHHHHHHhc
No 240
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=24.40 E-value=47 Score=30.40 Aligned_cols=19 Identities=32% Similarity=0.490 Sum_probs=15.6
Q ss_pred CccceeccCCCCCchhhhh
Q psy1198 35 GKAATLYGAPGGGKAATLY 53 (249)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~ 53 (249)
.....+||.||.||.+++-
T Consensus 40 ~~~i~I~G~~GtGKT~l~~ 58 (365)
T TIGR02928 40 PSNVFIYGKTGTGKTAVTK 58 (365)
T ss_pred CCcEEEECCCCCCHHHHHH
Confidence 3457899999999998763
No 241
>KOG0989|consensus
Probab=24.32 E-value=38 Score=33.06 Aligned_cols=22 Identities=36% Similarity=0.434 Sum_probs=16.5
Q ss_pred CCccceeccCCCCCchhhhhhh
Q psy1198 34 GGKAATLYGAPGGGKAATLYAQ 55 (249)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~ 55 (249)
..----+||.||.||..|..+-
T Consensus 56 ~lp~~LFyGPpGTGKTStalaf 77 (346)
T KOG0989|consen 56 ILPHYLFYGPPGTGKTSTALAF 77 (346)
T ss_pred CCceEEeeCCCCCcHhHHHHHH
Confidence 3445578999999998876543
No 242
>PF11640 TAN: Telomere-length maintenance and DNA damage repair; InterPro: IPR021668 ATM is a large protein kinase, in humans, critical for responding to DNA double-strand breaks (DSBs). Tel1, the orthologue from budding yeast, also regulates responses to DSBs. Tel1 is important for maintaining viability and for phosphorylation of the DNA damage signal transducer kinase Rad53 (an orthologue of mammalian CHK2). In addition to functioning in the response to DSBs, numerous findings indicate that Tel1/ATM regulates telomeres. The overall domain structure of Tel1/ATM is shared by proteins of the phosphatidylinositol 3-kinase (PI3K)-related kinase (PIKK) family, but this family carries a unique and functionally important TAN sequence motif, near its N-terminal, LxxxKxxE/DRxxxL. which is conserved specifically in the Tel1/ATM subclass of the PIKKs. The TAN motif is essential for both telomere length maintenance and Tel1 action in response to DNA damage []. It is classified as an 2.7.11.1 from EC. ; GO: 0004674 protein serine/threonine kinase activity
Probab=24.19 E-value=4.2e+02 Score=22.02 Aligned_cols=55 Identities=15% Similarity=0.204 Sum_probs=37.6
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCC-CCCCCCCCccChHHHHHHhcCCC
Q psy1198 125 KAQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGN-EDTLTGFPVKQVVPALITLLSMD 180 (249)
Q Consensus 125 rl~~Ll~~L~S~~D~~~QLeAL~eLrelLSmsn-ep~I~~fp~~glVP~LV~iLs~e 180 (249)
.+.+++..|.| +.-...=.++.+|..+|+... ...++...-..+...|.+++..|
T Consensus 5 ~i~~~~~~L~S-~k~keR~~al~~L~~il~~~~~~~~l~~k~~~~ifeaL~~~i~~E 60 (155)
T PF11640_consen 5 DINSILRLLSS-DKIKERNKALEDLRHILSSPPRVDSLNDKQWHSIFEALFRCIEKE 60 (155)
T ss_pred hHHHHHHHHhc-cccchHHHHHHHHHHHHcCccccccCCcchHHHHHHHHHHHHHHH
Confidence 46778889998 477777889999999997631 13344444456667777777543
No 243
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=23.28 E-value=41 Score=27.60 Aligned_cols=17 Identities=41% Similarity=0.685 Sum_probs=12.3
Q ss_pred cceeccCCCCCchhhhh
Q psy1198 37 AATLYGAPGGGKAATLY 53 (249)
Q Consensus 37 ~~~~~~~~~~~~~~~~~ 53 (249)
...+.|.||.||..++-
T Consensus 19 ~~~i~GpPGTGKT~~l~ 35 (236)
T PF13086_consen 19 ITLIQGPPGTGKTTTLA 35 (236)
T ss_dssp -EEEE-STTSSHHHHHH
T ss_pred CEEEECCCCCChHHHHH
Confidence 57889999999986553
No 244
>PF02084 Bindin: Bindin; InterPro: IPR000775 Bindin, the major protein component of the acrosome granule of sea urchin sperm, mediates species-specific adhesion of sperm to the egg surface during fertilisation [, ]. The protein coats the acrosomal process after externalisation by the acrosome reaction; it binds to sulphated, fucose-containing polysaccharides on the vitelline-layer receptor proteoglycans that cover the egg plasma membrane. Bindins from different genera show high levels of sequence similarity in both the mature bindin domain and in the probindin precursor region. The most highly conserved region is a 42-residue segment in the central portion of the mature bindin protein. This domain may be responsible for conserved functions of bindin, while the more highly divergent flanking regions may be responsible for its species-specific properties [].; GO: 0007342 fusion of sperm to egg plasma membrane
Probab=22.98 E-value=61 Score=30.18 Aligned_cols=20 Identities=35% Similarity=0.303 Sum_probs=16.0
Q ss_pred HhhcCCChhHHHHHHHHHHH
Q psy1198 217 KLQVIQCMDVAEQSLTALEM 236 (249)
Q Consensus 217 kLLsi~yiDVAEQALwALen 236 (249)
+|.+|-+.+|+||+|.|+-.
T Consensus 143 LLAnIgdP~VreqVLsAMqE 162 (238)
T PF02084_consen 143 LLANIGDPEVREQVLSAMQE 162 (238)
T ss_pred HHhhcCCHHHHHHHHHHHhh
Confidence 45688889999999998743
No 245
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=22.62 E-value=43 Score=29.81 Aligned_cols=15 Identities=33% Similarity=0.618 Sum_probs=12.1
Q ss_pred ceeccCCCCCchhhh
Q psy1198 38 ATLYGAPGGGKAATL 52 (249)
Q Consensus 38 ~~~~~~~~~~~~~~~ 52 (249)
.-+||.||.||....
T Consensus 45 vll~GppGtGKTtlA 59 (261)
T TIGR02881 45 MIFKGNPGTGKTTVA 59 (261)
T ss_pred EEEEcCCCCCHHHHH
Confidence 458999999997554
No 246
>KOG1991|consensus
Probab=22.50 E-value=2e+02 Score=32.03 Aligned_cols=74 Identities=16% Similarity=0.235 Sum_probs=47.8
Q ss_pred ChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchhHHHHhccHHHHHHHhhcC----CChhHHHHHHHHHHHhhhhchh
Q psy1198 168 QVVPALITLLSMDHNFDMMNNACRALTYMMEALPRSSAVVLDAVPTFLEKLQVI----QCMDVAEQSLTALEMLSRRHSK 243 (249)
Q Consensus 168 glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~qT~~VVGAVPiL~~kLLsi----~yiDVAEQALwALenISgD~p~ 243 (249)
..+....++|.++.+.-++.+||-||--+.+..+..-..|---||.+.++|+.+ +..||. .+|++|-...+.
T Consensus 502 ~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne~End~Lt----~vme~iV~~fse 577 (1010)
T KOG1991|consen 502 EALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSNEVENDDLT----NVMEKIVCKFSE 577 (1010)
T ss_pred HHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHhcchhHHH----HHHHHHHHHHHH
Confidence 455556677776777889999999999999977754332335566666667654 334443 455666555555
Q ss_pred HH
Q psy1198 244 AI 245 (249)
Q Consensus 244 aI 245 (249)
++
T Consensus 578 El 579 (1010)
T KOG1991|consen 578 EL 579 (1010)
T ss_pred hh
Confidence 43
No 247
>PF05729 NACHT: NACHT domain
Probab=22.42 E-value=47 Score=25.89 Aligned_cols=16 Identities=38% Similarity=0.638 Sum_probs=12.9
Q ss_pred eeccCCCCCchhhhhh
Q psy1198 39 TLYGAPGGGKAATLYA 54 (249)
Q Consensus 39 ~~~~~~~~~~~~~~~~ 54 (249)
.++|.||.||...+..
T Consensus 4 ~I~G~~G~GKStll~~ 19 (166)
T PF05729_consen 4 WISGEPGSGKSTLLRK 19 (166)
T ss_pred EEECCCCCChHHHHHH
Confidence 4789999999887653
No 248
>PF13925 Katanin_con80: con80 domain of Katanin
Probab=22.08 E-value=4.8e+02 Score=22.12 Aligned_cols=36 Identities=14% Similarity=0.157 Sum_probs=27.1
Q ss_pred cHHHHHHHhhcCCChhHHHHHHHHHHHhhhhchhHHh
Q psy1198 210 AVPTFLEKLQVIQCMDVAEQSLTALEMLSRRHSKAIL 246 (249)
Q Consensus 210 AVPiL~~kLLsi~yiDVAEQALwALenISgD~p~aIL 246 (249)
.+|.+. .|+.+.|.+-..-++..|..|.+.....|-
T Consensus 70 lLP~i~-~LL~Sk~E~~i~~aL~~L~~i~~~f~~~I~ 105 (164)
T PF13925_consen 70 LLPLIE-ELLQSKYESYISVALEMLRSILKKFGPVIR 105 (164)
T ss_pred HHHHHH-HHHhCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666 488888888888888888888877666654
No 249
>PRK06620 hypothetical protein; Validated
Probab=21.88 E-value=46 Score=29.25 Aligned_cols=19 Identities=16% Similarity=0.123 Sum_probs=16.1
Q ss_pred cceeccCCCCCchhhhhhh
Q psy1198 37 AATLYGAPGGGKAATLYAQ 55 (249)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~ 55 (249)
.-.|||.||.||.--+.+.
T Consensus 46 ~l~l~Gp~G~GKThLl~a~ 64 (214)
T PRK06620 46 TLLIKGPSSSGKTYLTKIW 64 (214)
T ss_pred eEEEECCCCCCHHHHHHHH
Confidence 4689999999999888763
No 250
>KOG1820|consensus
Probab=21.76 E-value=7.7e+02 Score=26.87 Aligned_cols=98 Identities=15% Similarity=0.211 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCc---hhHHHHhccHHHHHHH
Q psy1198 141 QQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEALP---RSSAVVLDAVPTFLEK 217 (249)
Q Consensus 141 ~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp---~qT~~VVGAVPiL~~k 217 (249)
..++++..+++.... ..+...+.+.+..+|++. +|.+--+....|--.+..+. .+...|...+|.++.
T Consensus 351 ~l~d~l~~~~d~~~n-------s~~l~~~~~~I~e~lk~k-np~~k~~~~~~l~r~~~~~~~~~~~~~t~~~l~p~~~~- 421 (815)
T KOG1820|consen 351 ELRDALLKALDAILN-------STPLSKMSEAILEALKGK-NPQIKGECLLLLDRKLRKLGPKTVEKETVKTLVPHLIK- 421 (815)
T ss_pred HHHHHHHHHHHHHHh-------cccHHHHHHHHHHHhcCC-ChhhHHHHHHHHHHHHhhcCCcCcchhhHHHHhHHHhh-
Confidence 344555555443333 244566778888888753 56654443333333333333 344555588999885
Q ss_pred hhcCCChhHHHHHHHHHHHhhhhchhHHhh
Q psy1198 218 LQVIQCMDVAEQSLTALEMLSRRHSKAILQ 247 (249)
Q Consensus 218 LLsi~yiDVAEQALwALenISgD~p~aIL~ 247 (249)
.-+-.+.||++-++.++.-|-+-++...++
T Consensus 422 ~~~D~~~~VR~Aa~e~~~~v~k~~Ge~~~~ 451 (815)
T KOG1820|consen 422 HINDTDKDVRKAALEAVAAVMKVHGEEVFK 451 (815)
T ss_pred hccCCcHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 555578999999999988877777666543
No 251
>PF00784 MyTH4: MyTH4 domain; InterPro: IPR000857 The microtubule-based kinesin motors and actin-based myosin motors generate movements required for intracellular trafficking, cell division, and muscle contraction. In general, these proteins consist of a motor domain that generates movement and a tail region that varies widely from class to class and is thought to mediate many of the regulatory or cargo binding functions specific to each class of motor []. The Myosin Tail Homology 4 (MyTH4) domain has been identified as a conserved domain in the tail domains of several different unconventional myosins [] and a plant kinesin-like protein [], but has more recently been found in several non-motor proteins []. Although the function is not yet fully understood, there is an evidence that the MyTH4 domain of Myosin-X (Myo10) binds to microtubules and thus could provide a link between an actin-based motor protein and the microtubule cytoskeleton []. The MyTH4 domain is found in one or two copies associated with other domains, such as myosin head, kinesin motor, FERM, PH, SH3 and IQ. The domain is predicted to be largely alpha-helical, interrupted by three or four turns. The MyTH4 domain contains four highly conserved regions designated MGD (consensus sequence L(K/R)(F/Y)MGDhP, LRDE (consensus LRDEhYCQhhKQHxxxN), RGW (consensus RGWxLh), and ELEA (RxxPPSxhELEA), where h indicates a hydrophobic residue and x is any residue [].; GO: 0005856 cytoskeleton; PDB: 3AU5_A 3AU4_A 3PZD_A 3PVL_A.
Probab=21.47 E-value=2.5e+02 Score=22.09 Aligned_cols=68 Identities=15% Similarity=0.063 Sum_probs=41.2
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCCC-----CCccHHHHHHHHHHHHHh
Q psy1198 124 TKAQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMD-----HNFDMMNNACRALTYMME 198 (249)
Q Consensus 124 ~rl~~Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~e-----~n~dLQ~eAArALTNIas 198 (249)
+=+-+|+..++...+++....+-+-|+-++++- .|...|.|-|.++|... .++++.-.|.+|+.++-.
T Consensus 22 Eiy~QliKQtt~np~~~s~~r~W~Ll~~~~~~f-------~PS~~l~~yL~~fl~~~~~~~~~~~~~~~~a~~c~~~L~~ 94 (114)
T PF00784_consen 22 EIYCQLIKQTTNNPSPDSCIRGWQLLALCCSCF-------PPSKDLLPYLRNFLNRHADSQESDPEVGKYAQYCLRRLKR 94 (114)
T ss_dssp HHHHHHHHHTSS-SSCHHHHHHHHHHHHHCCC-----------CCCHHHHHHHHHCCHCHHSTTSHHHCCHHHHHHHHCC
T ss_pred HHHHHHHHHHHCCCchhhHHHHHHHHHHHHhhc-------CCcHHHHHHHHHHHHHcCcccCCCchHHHHHHHHHHHHHH
Confidence 334566666665445555555555555555441 23458999999999864 246677788888888743
No 252
>PF13245 AAA_19: Part of AAA domain
Probab=21.37 E-value=56 Score=24.34 Aligned_cols=17 Identities=41% Similarity=0.657 Sum_probs=12.8
Q ss_pred ccceeccCCCCCchhhh
Q psy1198 36 KAATLYGAPGGGKAATL 52 (249)
Q Consensus 36 ~~~~~~~~~~~~~~~~~ 52 (249)
....+-|.||.||..++
T Consensus 11 ~~~vv~g~pGtGKT~~~ 27 (76)
T PF13245_consen 11 PLFVVQGPPGTGKTTTL 27 (76)
T ss_pred CeEEEECCCCCCHHHHH
Confidence 34556899999998654
No 253
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=21.36 E-value=6.8e+02 Score=23.42 Aligned_cols=58 Identities=16% Similarity=0.092 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHhcCchhHHHHh--ccHHHHHHHhh-cCCChhHHHHHHHHHHHhhhhchhHH
Q psy1198 187 NNACRALTYMMEALPRSSAVVL--DAVPTFLEKLQ-VIQCMDVAEQSLTALEMLSRRHSKAI 245 (249)
Q Consensus 187 ~eAArALTNIasgtp~qT~~VV--GAVPiL~~kLL-si~yiDVAEQALwALenISgD~p~aI 245 (249)
..|-+.|==++=-.|.+...+. .++..|++ |+ ....+.|.=-+|.+|--|=.|+|...
T Consensus 109 ~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~-LL~~~~~~~i~~a~L~tLv~iLld~p~N~ 169 (257)
T PF08045_consen 109 ALALRVLQGLCLLHPPSRKLFHREQNMELLLD-LLSPSNPPAIQSACLDTLVCILLDSPENQ 169 (257)
T ss_pred HHHHHHHHHHHHcCchHHHHHhhhhhHHHHHH-HhccCCCchHHHHHHHHHHHHHHcChHHH
Confidence 3345666666777788877777 89999997 55 55678888889999999999988763
No 254
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=20.38 E-value=68 Score=30.04 Aligned_cols=25 Identities=40% Similarity=0.539 Sum_probs=18.6
Q ss_pred CCCCCccceeccCCCCCchhhhhhh
Q psy1198 31 GGQGGKAATLYGAPGGGKAATLYAQ 55 (249)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~ 55 (249)
|-...+..-|||.||.||....-+-
T Consensus 152 g~~~p~gvLL~GppGtGKT~lakai 176 (364)
T TIGR01242 152 GIEPPKGVLLYGPPGTGKTLLAKAV 176 (364)
T ss_pred CCCCCceEEEECCCCCCHHHHHHHH
Confidence 4445567899999999997665544
No 255
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=20.37 E-value=60 Score=27.36 Aligned_cols=23 Identities=39% Similarity=0.856 Sum_probs=18.7
Q ss_pred hCCCCCCccceeccCCCCCchhh
Q psy1198 29 SGGGQGGKAATLYGAPGGGKAAT 51 (249)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~ 51 (249)
.||=.-|..-.+||.||.||..-
T Consensus 6 ~GGi~~g~i~~i~G~~GsGKT~l 28 (209)
T TIGR02237 6 GGGVERGTITQIYGPPGSGKTNI 28 (209)
T ss_pred cCCCCCCeEEEEECCCCCCHHHH
Confidence 45556688999999999999754
No 256
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=20.34 E-value=50 Score=25.88 Aligned_cols=16 Identities=38% Similarity=0.590 Sum_probs=12.8
Q ss_pred eeccCCCCCchhhhhh
Q psy1198 39 TLYGAPGGGKAATLYA 54 (249)
Q Consensus 39 ~~~~~~~~~~~~~~~~ 54 (249)
-|+|.||.||....+.
T Consensus 3 lL~G~~G~GKt~l~~~ 18 (139)
T PF07728_consen 3 LLVGPPGTGKTTLARE 18 (139)
T ss_dssp EEEESSSSSHHHHHHH
T ss_pred EEECCCCCCHHHHHHH
Confidence 4899999999876553
No 257
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=20.29 E-value=1.7e+02 Score=28.97 Aligned_cols=59 Identities=17% Similarity=0.233 Sum_probs=42.1
Q ss_pred hhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCCC
Q psy1198 120 EDTATKAQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMD 180 (249)
Q Consensus 120 s~~~~rl~~Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~e 180 (249)
...+-=++.|++.|+.++++..|-.+-..+.+++.... .-.-.|.+.+|..|+.||-.|
T Consensus 308 ~KLnPiIrpLMdSIK~Een~~LQ~rsA~slA~Li~~~~--~rkp~PndKIvkNLc~flC~D 366 (441)
T PF12054_consen 308 KKLNPIIRPLMDSIKREENELLQQRSAESLARLIQLCV--DRKPCPNDKIVKNLCTFLCVD 366 (441)
T ss_pred CCccHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHh--CCCCCCcHHHHHHHhhhhccC
Confidence 34444567888889887788888877777777666643 111267899999999999543
Done!