Query psy1198
Match_columns 249
No_of_seqs 141 out of 394
Neff 4.1
Searched_HMMs 29240
Date Fri Aug 16 15:32:53 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1198.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1198hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tpo_A Importin subunit alpha- 99.9 8.4E-28 2.9E-32 225.1 9.4 148 94-243 41-195 (529)
2 3ul1_B Importin subunit alpha- 99.9 2.1E-27 7.1E-32 222.4 10.3 147 95-243 20-176 (510)
3 4b8j_A Importin subunit alpha- 99.8 6.8E-20 2.3E-24 168.6 10.7 148 94-243 41-193 (528)
4 1wa5_B Importin alpha subunit; 99.7 2E-18 6.7E-23 159.7 7.6 147 94-242 46-205 (530)
5 2jdq_A Importin alpha-1 subuni 99.6 3.1E-15 1E-19 132.2 10.5 115 126-242 22-139 (450)
6 3nmz_A APC variant protein; pr 99.5 2.6E-15 9.1E-20 142.8 4.8 110 123-240 31-178 (458)
7 4db8_A Armadillo-repeat protei 99.5 7.3E-15 2.5E-19 121.4 6.1 118 123-244 11-130 (252)
8 1xm9_A Plakophilin 1; armadill 99.5 2.2E-14 7.5E-19 133.0 9.5 111 125-240 3-117 (457)
9 3tt9_A Plakophilin-2; cell adh 99.4 7.2E-14 2.5E-18 122.8 5.9 115 124-241 8-126 (233)
10 4db6_A Armadillo repeat protei 99.4 8.2E-13 2.8E-17 106.6 8.5 115 126-244 14-130 (210)
11 4hxt_A De novo protein OR329; 99.3 5.4E-12 1.9E-16 102.7 8.6 115 125-243 3-119 (252)
12 1xqr_A HSPBP1 protein; armadil 99.3 4.4E-12 1.5E-16 113.9 8.6 117 126-245 126-244 (296)
13 4db6_A Armadillo repeat protei 99.3 6E-12 2.1E-16 101.5 8.3 114 126-243 56-171 (210)
14 1xm9_A Plakophilin 1; armadill 99.2 9.5E-12 3.2E-16 115.4 7.1 114 124-240 44-173 (457)
15 1xqr_A HSPBP1 protein; armadil 99.2 1.3E-11 4.5E-16 110.8 7.5 120 121-243 25-158 (296)
16 3l6x_A Catenin delta-1; cateni 99.2 2E-11 6.9E-16 119.9 7.6 113 125-240 49-164 (584)
17 4hxt_A De novo protein OR329; 99.2 3.7E-11 1.3E-15 97.7 7.5 115 125-243 129-245 (252)
18 4db8_A Armadillo-repeat protei 99.2 9.3E-11 3.2E-15 96.8 8.9 114 125-243 97-213 (252)
19 2jdq_A Importin alpha-1 subuni 99.1 2.5E-10 8.5E-15 100.8 8.6 115 125-241 65-181 (450)
20 3nmw_A APC variant protein; AR 99.1 1.5E-10 5E-15 106.2 7.2 118 126-245 216-340 (354)
21 3tt9_A Plakophilin-2; cell adh 99.1 3E-10 1E-14 99.8 8.5 75 167-242 7-84 (233)
22 4b8j_A Importin subunit alpha- 99.0 3.2E-10 1.1E-14 104.3 6.9 113 126-241 288-402 (528)
23 3nmz_A APC variant protein; pr 99.0 3.1E-10 1.1E-14 108.0 6.9 116 126-243 332-454 (458)
24 3tpo_A Importin subunit alpha- 99.0 3.6E-10 1.2E-14 105.8 6.8 114 126-243 295-410 (529)
25 1jdh_A Beta-catenin; beta-cate 99.0 1.6E-09 5.3E-14 97.9 8.9 113 125-241 60-174 (529)
26 3l6x_A Catenin delta-1; cateni 99.0 7E-10 2.4E-14 109.0 7.1 116 125-242 91-224 (584)
27 3ul1_B Importin subunit alpha- 98.9 6E-10 2E-14 104.3 4.6 115 126-244 276-392 (510)
28 3nmw_A APC variant protein; AR 98.9 3.1E-09 1.1E-13 97.4 8.8 115 126-242 172-295 (354)
29 3now_A UNC-45 protein, SD10334 98.9 4.4E-09 1.5E-13 107.0 10.4 114 124-241 421-567 (810)
30 1wa5_B Importin alpha subunit; 98.9 2.5E-09 8.4E-14 98.9 6.7 112 126-241 301-414 (530)
31 3now_A UNC-45 protein, SD10334 98.9 4.4E-09 1.5E-13 106.9 9.0 112 126-239 538-652 (810)
32 2z6g_A B-catenin; FULL-length, 98.8 7.8E-09 2.7E-13 102.4 9.3 113 125-241 193-307 (780)
33 2z6h_A Catenin beta-1, beta-ca 98.8 1.3E-08 4.3E-13 97.2 9.3 114 124-241 56-171 (644)
34 1jdh_A Beta-catenin; beta-cate 98.6 1.7E-07 5.7E-12 84.6 11.0 112 126-243 229-343 (529)
35 2z6h_A Catenin beta-1, beta-ca 98.5 2.3E-07 7.8E-12 88.5 9.4 112 125-239 99-212 (644)
36 2z6g_A B-catenin; FULL-length, 98.5 2.3E-07 7.8E-12 91.9 7.4 113 125-242 151-266 (780)
37 3opb_A SWI5-dependent HO expre 98.1 1.1E-05 3.7E-10 82.3 11.1 117 126-245 500-640 (778)
38 3ltj_A Alpharep-4; protein eng 98.0 4.5E-05 1.5E-09 61.2 11.1 93 126-242 78-170 (201)
39 4gmo_A Putative uncharacterize 98.0 8.2E-06 2.8E-10 79.9 7.8 75 168-245 35-111 (684)
40 3ltm_A Alpha-REP4; protein eng 98.0 6E-05 2.1E-09 60.9 10.8 100 124-240 19-142 (211)
41 3ltj_A Alpharep-4; protein eng 98.0 8.1E-05 2.8E-09 59.7 11.3 63 168-241 76-138 (201)
42 3ltm_A Alpha-REP4; protein eng 98.0 7.8E-05 2.7E-09 60.2 11.0 67 168-245 112-178 (211)
43 1te4_A Conserved protein MTH18 97.9 1.9E-05 6.6E-10 60.6 6.1 88 126-237 44-131 (131)
44 1ibr_B P95, importin beta-1 su 97.9 6E-05 2.1E-09 66.2 9.5 117 125-244 129-251 (462)
45 4fdd_A Transportin-1; heat rep 97.8 4.9E-05 1.7E-09 74.2 8.8 116 126-245 130-250 (852)
46 2qk2_A LP04448P; mini spindles 97.6 0.00035 1.2E-08 58.3 10.1 110 128-241 19-129 (242)
47 1oyz_A Hypothetical protein YI 97.6 0.00043 1.5E-08 58.2 10.2 90 127-238 131-220 (280)
48 2vgl_B AP-2 complex subunit be 97.6 0.00014 4.6E-09 69.4 7.7 74 167-243 120-193 (591)
49 4fdd_A Transportin-1; heat rep 97.5 7.1E-05 2.4E-09 73.1 5.3 112 128-244 363-476 (852)
50 3opb_A SWI5-dependent HO expre 97.5 0.00031 1.1E-08 71.6 10.1 110 126-239 608-728 (778)
51 1oyz_A Hypothetical protein YI 97.5 0.00042 1.4E-08 58.3 9.3 108 125-241 55-190 (280)
52 4gmo_A Putative uncharacterize 97.5 9.9E-05 3.4E-09 72.3 5.2 119 121-243 31-173 (684)
53 1te4_A Conserved protein MTH18 97.4 0.00025 8.5E-09 54.4 5.5 61 170-241 44-104 (131)
54 2qk2_A LP04448P; mini spindles 97.3 0.0026 8.8E-08 53.0 11.5 110 127-247 101-213 (242)
55 2qk1_A Protein STU2; STU2P, XM 97.2 0.0018 6E-08 56.0 10.0 106 132-241 24-135 (249)
56 1u6g_C TIP120 protein, CAND1; 97.2 0.0019 6.5E-08 65.6 11.5 114 124-243 6-119 (1230)
57 1qgr_A Protein (importin beta 97.1 0.00099 3.4E-08 63.6 7.9 116 126-244 130-251 (876)
58 1b3u_A Protein (protein phosph 97.1 0.0014 4.9E-08 59.3 8.0 111 124-244 10-121 (588)
59 1ibr_B P95, importin beta-1 su 97.0 0.0017 5.8E-08 56.9 8.0 77 167-245 365-443 (462)
60 2bpt_A Importin beta-1 subunit 97.0 0.0023 7.8E-08 61.0 9.2 110 130-245 417-535 (861)
61 2qk1_A Protein STU2; STU2P, XM 97.0 0.0075 2.6E-07 52.0 11.5 112 126-245 106-226 (249)
62 1qgr_A Protein (importin beta 96.9 0.0025 8.5E-08 60.9 8.6 75 167-243 365-441 (876)
63 1b3u_A Protein (protein phosph 96.9 0.0027 9.1E-08 57.5 8.2 102 130-240 447-549 (588)
64 2vgl_B AP-2 complex subunit be 96.8 0.0014 4.7E-08 62.4 6.3 112 124-245 202-317 (591)
65 2bpt_A Importin beta-1 subunit 96.6 0.0077 2.6E-07 57.4 9.1 116 126-244 456-590 (861)
66 3grl_A General vesicular trans 96.6 0.025 8.6E-07 56.8 13.1 141 94-243 37-199 (651)
67 3grl_A General vesicular trans 96.3 0.0045 1.5E-07 62.2 6.2 115 123-242 121-244 (651)
68 1u6g_C TIP120 protein, CAND1; 96.2 0.013 4.4E-07 59.5 9.1 112 125-243 49-167 (1230)
69 4ffb_C Protein STU2; tubulin f 95.8 0.11 3.8E-06 44.3 11.6 107 130-238 15-131 (278)
70 1w63_A Adapter-related protein 95.5 0.014 4.8E-07 56.2 5.5 72 167-243 141-212 (618)
71 3b2a_A TON_1937, putative unch 95.0 0.14 4.7E-06 46.6 9.9 94 133-240 124-219 (265)
72 4ady_A RPN2, 26S proteasome re 94.9 0.11 3.9E-06 54.2 10.5 107 122-244 575-681 (963)
73 1w63_A Adapter-related protein 94.9 0.069 2.4E-06 51.3 8.3 109 127-243 145-267 (618)
74 3b2a_A TON_1937, putative unch 94.9 0.065 2.2E-06 48.7 7.4 114 124-241 33-181 (265)
75 3dad_A FH1/FH2 domain-containi 94.4 0.19 6.4E-06 47.0 9.5 116 121-241 115-233 (339)
76 3gs3_A Symplekin, LD45768P; he 91.9 1.2 4.1E-05 39.5 10.4 107 120-237 11-117 (257)
77 2vgl_A Adaptor protein complex 91.4 0.32 1.1E-05 47.1 6.7 104 130-244 117-221 (621)
78 2f31_A Diaphanous protein homo 90.9 0.23 7.8E-06 42.6 4.6 66 182-249 67-140 (233)
79 3tjz_B Coatomer subunit gamma; 90.7 0.084 2.9E-06 48.9 1.8 75 167-246 249-323 (355)
80 2x19_B Importin-13; nuclear tr 90.2 2.4 8.3E-05 41.6 11.6 76 167-245 485-562 (963)
81 3o2t_A Symplekin; heat repeat, 90.0 1.5 5.3E-05 41.2 9.7 106 121-237 22-127 (386)
82 2vgl_A Adaptor protein complex 89.4 1.3 4.3E-05 42.9 8.9 101 131-242 336-436 (621)
83 3eg5_B Protein diaphanous homo 88.2 0.65 2.2E-05 43.1 5.7 120 127-249 69-206 (383)
84 4ady_A RPN2, 26S proteasome re 88.1 2 6.8E-05 45.0 9.8 75 168-242 541-644 (963)
85 4ffb_C Protein STU2; tubulin f 87.8 2.8 9.7E-05 35.5 9.1 72 167-240 138-213 (278)
86 2x1g_F Cadmus; transport prote 87.4 0.68 2.3E-05 45.8 5.6 75 168-246 501-579 (971)
87 2of3_A ZYG-9; multifunctional 86.7 1.7 5.8E-05 38.8 7.3 112 127-244 49-166 (266)
88 1wa5_C Importin alpha RE-expor 85.5 1.2 4.1E-05 44.5 6.3 114 126-240 498-629 (960)
89 3zyq_A Hepatocyte growth facto 85.0 3.2 0.00011 35.7 8.0 111 123-241 6-120 (226)
90 1wa5_C Importin alpha RE-expor 85.0 0.57 1.9E-05 46.8 3.7 77 167-244 495-587 (960)
91 2x19_B Importin-13; nuclear tr 83.9 17 0.00058 35.6 13.5 104 124-240 24-133 (963)
92 3ebb_A Phospholipase A2-activa 83.2 4.1 0.00014 36.7 8.2 77 170-247 149-253 (304)
93 2iw3_A Elongation factor 3A; a 82.4 5 0.00017 42.0 9.5 107 126-239 97-204 (986)
94 3m1i_C Exportin-1; heat repeat 81.1 1.7 5.9E-05 43.9 5.4 64 182-246 513-576 (1049)
95 3l9t_A Putative uncharacterize 80.7 21 0.0007 31.8 11.6 139 97-247 39-215 (240)
96 2bnx_A Diaphanous protein homo 80.1 2.2 7.4E-05 39.5 5.3 66 182-249 71-144 (386)
97 3ebb_A Phospholipase A2-activa 80.0 2 6.9E-05 38.7 5.0 105 131-240 154-264 (304)
98 2db0_A 253AA long hypothetical 75.5 13 0.00043 33.3 8.5 75 167-245 31-105 (253)
99 4hat_C Exportin-1; heat repeat 74.6 1.8 6.2E-05 44.9 3.4 77 168-245 495-575 (1023)
100 3g2s_A C-terminal fragment of 73.9 14 0.0005 30.0 8.1 111 124-242 10-129 (149)
101 2x1g_F Cadmus; transport prote 73.8 4.6 0.00016 39.9 6.0 86 143-241 527-617 (971)
102 2of3_A ZYG-9; multifunctional 72.6 16 0.00054 32.5 8.6 79 164-247 163-244 (266)
103 1juq_A ADP-ribosylation factor 72.3 11 0.00039 31.1 7.2 111 123-241 11-130 (171)
104 3tjz_B Coatomer subunit gamma; 72.3 41 0.0014 30.9 11.7 102 127-242 107-208 (355)
105 1dvp_A HRS, hepatocyte growth 72.3 18 0.00062 30.5 8.6 107 126-239 6-115 (220)
106 1ho8_A Vacuolar ATP synthase s 71.0 4.7 0.00016 39.2 5.2 72 168-240 395-477 (480)
107 3ldz_A STAM-1, signal transduc 68.4 12 0.00042 29.7 6.4 107 126-240 6-115 (140)
108 2iw3_A Elongation factor 3A; a 67.5 11 0.00036 39.6 7.2 115 126-246 56-170 (986)
109 1elk_A Target of MYB1; superhe 66.5 22 0.00074 28.8 7.6 110 124-240 15-131 (157)
110 1x5b_A Signal transducing adap 63.3 28 0.00095 28.5 7.7 109 125-241 15-127 (163)
111 3u0r_A Apoptosis inhibitor 5; 62.7 6.1 0.00021 38.7 4.1 109 123-248 28-138 (507)
112 3ibv_A Exportin-T; karyopherin 62.3 3.2 0.00011 42.7 2.2 76 168-244 490-571 (980)
113 2db0_A 253AA long hypothetical 59.2 53 0.0018 29.3 9.1 95 140-244 47-141 (253)
114 1mhq_A ADP-ribosylation factor 58.4 35 0.0012 27.5 7.4 108 126-241 2-118 (148)
115 3gae_A Protein DOA1; UFD3, CDC 55.1 50 0.0017 28.7 8.4 34 168-201 89-122 (253)
116 1x5b_A Signal transducing adap 48.7 15 0.0005 30.2 3.7 81 121-202 49-129 (163)
117 3rru_A TOM1L1 protein; structu 48.6 48 0.0016 27.0 6.7 112 124-242 15-133 (152)
118 4hat_C Exportin-1; heat repeat 47.7 30 0.001 35.8 6.6 75 168-243 540-622 (1023)
119 3gae_A Protein DOA1; UFD3, CDC 46.1 14 0.00049 32.2 3.4 115 125-242 90-220 (253)
120 4atg_A TAF6; transcription, TF 41.4 1E+02 0.0036 26.2 8.0 101 125-243 12-123 (196)
121 3m1i_C Exportin-1; heat repeat 41.0 1.3E+02 0.0045 30.3 9.9 73 124-208 16-92 (1049)
122 3zyq_A Hepatocyte growth facto 38.3 16 0.00054 31.3 2.4 83 120-203 41-123 (226)
123 3g2s_A C-terminal fragment of 36.8 42 0.0014 27.2 4.6 84 120-204 44-132 (149)
124 1dvp_A HRS, hepatocyte growth 33.0 21 0.00071 30.1 2.3 79 121-200 39-117 (220)
125 3ibv_A Exportin-T; karyopherin 32.2 1.5E+02 0.005 30.5 8.7 59 138-202 206-264 (980)
126 3dad_A FH1/FH2 domain-containi 31.0 1.4E+02 0.0049 27.6 7.7 103 126-232 162-279 (339)
127 1mhq_A ADP-ribosylation factor 30.9 54 0.0018 26.4 4.3 84 120-204 34-122 (148)
128 1jbk_A CLPB protein; beta barr 30.3 17 0.00058 27.1 1.1 19 35-53 43-61 (195)
129 3gjx_A Exportin-1; transport, 29.9 91 0.0031 32.8 6.8 78 167-245 516-601 (1073)
130 1lsh_A Lipovitellin (LV-1N, LV 29.3 1.5E+02 0.0053 30.5 8.4 64 131-207 447-516 (1056)
131 3te6_A Regulatory protein SIR3 29.1 13 0.00046 33.5 0.4 21 34-54 44-64 (318)
132 4atg_A TAF6; transcription, TF 29.0 2.7E+02 0.0091 23.6 9.2 99 139-239 59-162 (196)
133 3uk6_A RUVB-like 2; hexameric 28.7 34 0.0012 29.4 2.9 26 29-54 64-89 (368)
134 4b4t_M 26S protease regulatory 28.1 25 0.00085 33.2 2.1 25 31-55 211-235 (434)
135 1l8q_A Chromosomal replication 26.3 46 0.0016 28.4 3.3 23 33-55 35-57 (324)
136 3ec2_A DNA replication protein 26.2 26 0.00087 27.2 1.5 23 34-56 37-59 (180)
137 3a6p_A Exportin-5; exportin-5, 26.0 1E+02 0.0035 32.2 6.4 78 169-246 530-620 (1204)
138 2chg_A Replication factor C sm 26.0 23 0.00078 27.1 1.2 16 38-53 41-56 (226)
139 1juq_A ADP-ribosylation factor 24.4 61 0.0021 26.7 3.6 82 121-203 47-133 (171)
140 3eie_A Vacuolar protein sortin 24.3 34 0.0012 29.6 2.1 25 31-55 47-71 (322)
141 3bos_A Putative DNA replicatio 23.9 30 0.001 27.2 1.5 20 34-53 51-70 (242)
142 1njg_A DNA polymerase III subu 23.0 37 0.0013 26.1 1.9 18 36-53 46-63 (250)
143 4b4t_L 26S protease subunit RP 23.0 35 0.0012 32.2 2.1 24 31-54 211-234 (437)
144 4b4t_K 26S protease regulatory 22.8 36 0.0012 32.0 2.1 25 31-55 202-226 (428)
145 2qz4_A Paraplegin; AAA+, SPG7, 22.8 37 0.0013 27.5 1.9 20 34-53 38-57 (262)
146 1xwi_A SKD1 protein; VPS4B, AA 22.7 38 0.0013 29.6 2.1 23 32-54 42-64 (322)
147 2p1h_A APAF-1, apoptotic prote 22.7 14 0.00047 26.9 -0.6 58 166-229 24-88 (94)
148 3syl_A Protein CBBX; photosynt 22.4 35 0.0012 28.6 1.8 20 33-52 65-84 (309)
149 2r62_A Cell division protease 22.4 40 0.0014 27.7 2.1 21 34-54 43-63 (268)
150 3h4m_A Proteasome-activating n 22.2 40 0.0014 27.9 2.0 23 33-55 49-71 (285)
151 2p65_A Hypothetical protein PF 21.7 21 0.00073 26.8 0.2 19 35-53 43-61 (187)
152 3ldz_A STAM-1, signal transduc 21.7 56 0.0019 25.9 2.7 77 121-200 39-116 (140)
153 3b9p_A CG5977-PA, isoform A; A 21.5 35 0.0012 28.6 1.5 23 33-55 52-74 (297)
154 4b4t_J 26S protease regulatory 21.4 41 0.0014 31.7 2.1 25 31-55 178-202 (405)
155 1d2n_A N-ethylmaleimide-sensit 21.3 31 0.0011 28.7 1.2 24 31-54 60-83 (272)
156 2zts_A Putative uncharacterize 20.9 33 0.0011 27.4 1.2 26 27-52 22-47 (251)
157 3t15_A Ribulose bisphosphate c 20.7 40 0.0014 29.0 1.8 23 31-53 32-54 (293)
158 3gjx_A Exportin-1; transport, 20.7 3.9E+02 0.013 28.0 9.5 73 124-208 28-104 (1073)
159 2v1u_A Cell division control p 20.4 45 0.0015 28.3 2.1 20 34-53 43-62 (387)
No 1
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.94 E-value=8.4e-28 Score=225.09 Aligned_cols=148 Identities=14% Similarity=0.213 Sum_probs=124.3
Q ss_pred cchhHHHHhhCCCC--CCCCCCccC---ccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccC
Q psy1198 94 TSLLSGVASSSSGP--SHAPGAALD---SESEDTATKAQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQ 168 (249)
Q Consensus 94 ~~r~q~Llkrr~l~--~~~~gs~~~---~~~s~~~~rl~~Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp~~g 168 (249)
.||+|.|.|||+++ ++...+.+. .........+++|++.|+| +|+..|++|++.+|++||.+++|||+.++..|
T Consensus 41 ~kr~e~l~krR~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lv~~l~s-~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G 119 (529)
T 3tpo_A 41 AKKDEQMLKRRNVSSFPDDATSPLQENRNNQGTVNWSVEDIVKGINS-NNLESQLQATQAARKLLSREKQPPIDNIIRAG 119 (529)
T ss_dssp ---CCSCSCCCCCC---------------CGGGSSCCHHHHHHHHTS-SCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTT
T ss_pred HHHHHHHHhccCCCCCcccccChhhhccchhhhHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHcCCCCchHHHHHHCC
Confidence 48999999999975 222222221 1122334568999999999 69999999999999999999999999988999
Q ss_pred hHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchhHHHHh--ccHHHHHHHhhcCCChhHHHHHHHHHHHhhhhchh
Q psy1198 169 VVPALITLLSMDHNFDMMNNACRALTYMMEALPRSSAVVL--DAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRHSK 243 (249)
Q Consensus 169 lVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~qT~~VV--GAVPiL~~kLLsi~yiDVAEQALwALenISgD~p~ 243 (249)
+||.||++|+.++++++|++|||||+||++++++++..|| |+||.|++ |+.+++.+|.|||+|||+||+.|++.
T Consensus 120 ~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~vv~~Gaip~Lv~-LL~s~~~~v~e~A~~aL~nLa~~~~~ 195 (529)
T 3tpo_A 120 LIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFIS-LLASPHAHISEQAVWALGNIAGAGSA 195 (529)
T ss_dssp HHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHH-HTTCSCHHHHHHHHHHHHHHHTTCHH
T ss_pred CHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHH-HHcCCCHHHHHHHHHHHHHHhccCHH
Confidence 9999999999888999999999999999999999999999 99999996 88999999999999999999998764
No 2
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.94 E-value=2.1e-27 Score=222.36 Aligned_cols=147 Identities=16% Similarity=0.231 Sum_probs=114.5
Q ss_pred chhHHHHhhCCCCCCCCCCc--------cCccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCc
Q psy1198 95 SLLSGVASSSSGPSHAPGAA--------LDSESEDTATKAQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPV 166 (249)
Q Consensus 95 ~r~q~Llkrr~l~~~~~gs~--------~~~~~s~~~~rl~~Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp~ 166 (249)
.+.+.+.|+|+++.--.+.. ........+..+++||++|+| +|+..|++|++.+||+||.+++|||+.++.
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~v~~l~s-~d~~~q~~a~~~~rklls~e~~ppi~~ii~ 98 (510)
T 3ul1_B 20 ETAAALFERNHMDSPDLGTDDDDLAMADIGSNQGTVNWSVEDIVKGINS-NNLESQLQATQAARKLLSREKQPPIDNIIR 98 (510)
T ss_dssp ---------------------------------CCSSCCHHHHHHHHTS-SCHHHHHHHHHHHHHHHTCSSCCCHHHHHH
T ss_pred HHHHHHHHhhccCCccccCCccccchhhhccccchhhhhHHHHHHHhcC-CCHHHHHHHHHHHHHHhcCCCCchHHHHHH
Confidence 34556666666542111211 112233445569999999999 599999999999999999999999999989
Q ss_pred cChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchhHHHHh--ccHHHHHHHhhcCCChhHHHHHHHHHHHhhhhchh
Q psy1198 167 KQVVPALITLLSMDHNFDMMNNACRALTYMMEALPRSSAVVL--DAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRHSK 243 (249)
Q Consensus 167 ~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~qT~~VV--GAVPiL~~kLLsi~yiDVAEQALwALenISgD~p~ 243 (249)
.|+||+||++|++++++++|++|||||+||++++++++..|| |+||.|++ |+.+++.+|.|||+|||+||+.|++.
T Consensus 99 ~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~vv~~GaIp~Lv~-lL~s~~~~v~e~A~~aL~nLa~d~~~ 176 (510)
T 3ul1_B 99 AGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFIS-LLASPHAHISEQAVWALGNIAGDGSA 176 (510)
T ss_dssp TTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHH-HTTCSCHHHHHHHHHHHHHHHTTCHH
T ss_pred CCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHH-HHcCCCHHHHHHHHHHHHHHHhCCHH
Confidence 999999999999888999999999999999999999999999 99999996 78889999999999999999998875
No 3
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.81 E-value=6.8e-20 Score=168.58 Aligned_cols=148 Identities=20% Similarity=0.262 Sum_probs=111.6
Q ss_pred cchhHHHHhhCCCCC--CCC-CCccCccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccChH
Q psy1198 94 TSLLSGVASSSSGPS--HAP-GAALDSESEDTATKAQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVV 170 (249)
Q Consensus 94 ~~r~q~Llkrr~l~~--~~~-gs~~~~~~s~~~~rl~~Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp~~glV 170 (249)
.||+|+|+|||++.. ..+ ..............++.|++.|++ +|+..|+.|+..|+++++...++++..+...++|
T Consensus 41 ~~r~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~lv~~L~s-~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v 119 (528)
T 4b8j_A 41 SRREESLLKKRREGLQAQAPVPASAATGVDKKLESLPAMIGGVYS-DDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVV 119 (528)
T ss_dssp --------CCCC----------------------CHHHHHHHHTS-SCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCH
T ss_pred HHHHHHHHHHhccCCCcccccccccccchhhhHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCH
Confidence 599999999999731 111 100000111233558999999998 5999999999999999999877888777788999
Q ss_pred HHHHHhcCCCCCccHHHHHHHHHHHHHhcCchhHHHHh--ccHHHHHHHhhcCCChhHHHHHHHHHHHhhhhchh
Q psy1198 171 PALITLLSMDHNFDMMNNACRALTYMMEALPRSSAVVL--DAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRHSK 243 (249)
Q Consensus 171 P~LV~iLs~e~n~dLQ~eAArALTNIasgtp~qT~~VV--GAVPiL~~kLLsi~yiDVAEQALwALenISgD~p~ 243 (249)
|.|+++|+.++++++|++|+|||+||++..++....++ |+||.|++ |+..++.+|.|+|+|+|.||+.+.+.
T Consensus 120 ~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~-lL~~~~~~v~~~a~~aL~~l~~~~~~ 193 (528)
T 4b8j_A 120 PRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVK-LLGSSSDDVREQAVWALGNVAGDSPK 193 (528)
T ss_dssp HHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHH-HTTCSCHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHH-HhcCCCHHHHHHHHHHHHHHhCCChh
Confidence 99999999877799999999999999999999999888 99999997 77778999999999999999998764
No 4
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.74 E-value=2e-18 Score=159.68 Aligned_cols=147 Identities=21% Similarity=0.252 Sum_probs=117.6
Q ss_pred cchhHHHHhhCCCCCC----CCCCccC----ccch---hhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCC
Q psy1198 94 TSLLSGVASSSSGPSH----APGAALD----SESE---DTATKAQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLT 162 (249)
Q Consensus 94 ~~r~q~Llkrr~l~~~----~~gs~~~----~~~s---~~~~rl~~Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~ 162 (249)
.||++.|+|||++++. ....... .... .....++.|++.|++ +|+..|+.|+..|+++++..+++++.
T Consensus 46 ~~r~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lv~~L~s-~~~~~~~~A~~~L~~ll~~~~~~~~~ 124 (530)
T 1wa5_B 46 AKRDEALAKRRNFIPPTDGADSDEEDESSVSADQQFYSQLQQELPQMTQQLNS-DDMQEQLSATVKFRQILSREHRPPID 124 (530)
T ss_dssp CCCCSCCSCCCCC----------------------------CCHHHHHHHHSC-SSHHHHHHHHHHHHHHTCCSSSCSHH
T ss_pred HHHHHHHHHhhcCCccccccccCCchhhhhhhhhhhhhhhHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHhCCCCCccHH
Confidence 5999999999998531 0000000 0000 123457899999998 59999999999999999987777776
Q ss_pred CCCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchhHHHHh--ccHHHHHHHhhcCCChhHHHHHHHHHHHhhhh
Q psy1198 163 GFPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEALPRSSAVVL--DAVPTFLEKLQVIQCMDVAEQSLTALEMLSRR 240 (249)
Q Consensus 163 ~fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~qT~~VV--GAVPiL~~kLLsi~yiDVAEQALwALenISgD 240 (249)
.+...++||.|+++|+.++++++|++|+|+|+||++..++....++ |+||.|++ |+..++.+|.|+|+|+|.||+.+
T Consensus 125 ~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~-lL~~~~~~vr~~A~~aL~~l~~~ 203 (530)
T 1wa5_B 125 VVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQ-LLYTGSVEVKEQAIWALGNVAGD 203 (530)
T ss_dssp HHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHH-HHHHCCHHHHHHHHHHHHHHHTT
T ss_pred HHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHH-HHcCCCHHHHHHHHHHHHHHhCC
Confidence 6667899999999999876899999999999999999999998888 99999997 66678999999999999999987
Q ss_pred ch
Q psy1198 241 HS 242 (249)
Q Consensus 241 ~p 242 (249)
.+
T Consensus 204 ~~ 205 (530)
T 1wa5_B 204 ST 205 (530)
T ss_dssp CH
T ss_pred Cc
Confidence 65
No 5
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.60 E-value=3.1e-15 Score=132.18 Aligned_cols=115 Identities=21% Similarity=0.287 Sum_probs=103.3
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCcc-ChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchhH
Q psy1198 126 AQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVK-QVVPALITLLSMDHNFDMMNNACRALTYMMEALPRSS 204 (249)
Q Consensus 126 l~~Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp~~-glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~qT 204 (249)
++.+++.|++ +|+..+..|+..|+++++...++++..+... +++|.|+++|+.++++++|+.|+|+|+||++..++.+
T Consensus 22 l~~l~~~l~s-~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~ 100 (450)
T 2jdq_A 22 TSDMIEMIFS-KSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQT 100 (450)
T ss_dssp CHHHHHHHHS-SCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHH
T ss_pred HHHHHHHhcC-CCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHH
Confidence 6788999998 5999999999999999998777776655555 9999999999987789999999999999999999999
Q ss_pred HHHh--ccHHHHHHHhhcCCChhHHHHHHHHHHHhhhhch
Q psy1198 205 AVVL--DAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRHS 242 (249)
Q Consensus 205 ~~VV--GAVPiL~~kLLsi~yiDVAEQALwALenISgD~p 242 (249)
..++ |+||.|++ |+..++.+|+|+|+|+|.||+.+.+
T Consensus 101 ~~~~~~~~i~~L~~-lL~~~~~~vr~~a~~~L~~l~~~~~ 139 (450)
T 2jdq_A 101 RIVIQAGAVPIFIE-LLSSEFEDVQEQAVWALGNIAGDST 139 (450)
T ss_dssp HHHHHTTHHHHHHH-HTTCSCHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHhCCCHHHHHH-HHcCCCHHHHHHHHHHHHHHccCCH
Confidence 8888 99999997 7777899999999999999999875
No 6
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=99.54 E-value=2.6e-15 Score=142.78 Aligned_cols=110 Identities=22% Similarity=0.210 Sum_probs=80.3
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCC-CCCCccChHHHHHHhcCCCCC-----------ccHHHHHH
Q psy1198 123 ATKAQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTL-TGFPVKQVVPALITLLSMDHN-----------FDMMNNAC 190 (249)
Q Consensus 123 ~~rl~~Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I-~~fp~~glVP~LV~iLs~e~n-----------~dLQ~eAA 190 (249)
.+.+..|+..|.+. |+. ..+|++|+++.++++ ..+...|.||.||+||+.+++ +++||+|+
T Consensus 31 ~~~~~~l~~~~~~~-~~~------~~~~~ll~~~~~~~~~~~~~~~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~ 103 (458)
T 3nmz_A 31 VEMVYSLLSMLGTH-DKD------DMSRTLLAMSSSQDSCISMRQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARAS 103 (458)
T ss_dssp ---------------CCH------HHHHHHHHHHSSTTHHHHHHHHTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHH
T ss_pred HHHHHHHHHHhcCC-CHH------HHHHHHHHHHcCCcHHHHHHHCCCHHHHHHHHhcccccccccccccCCHHHHHHHH
Confidence 34567788888874 665 278999999999997 457788999999999997654 79999999
Q ss_pred HHHHHHHhcCchhHHHHh--ccH----------HHHHHHhhcCC--Chh-----HHH-------HHHHHHHHhhhh
Q psy1198 191 RALTYMMEALPRSSAVVL--DAV----------PTFLEKLQVIQ--CMD-----VAE-------QSLTALEMLSRR 240 (249)
Q Consensus 191 rALTNIasgtp~qT~~VV--GAV----------PiL~~kLLsi~--yiD-----VAE-------QALwALenISgD 240 (249)
||||||+++.|+++.+++ +++ |.|++ |++.. ..| |.| ||+|+|.|||.|
T Consensus 104 ~al~ni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~qAv~aL~nls~~ 178 (458)
T 3nmz_A 104 AALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWE-WQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFD 178 (458)
T ss_dssp HHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHH-HHTTTSSSSCCCSCC--CCCTTTTHHHHHHHHHHTTS
T ss_pred HHHHHHHccCcchhHHHHHHHHHHHHHHhhhhhHHHHH-HHHhhccccccccCCccchhhHHHHHHHHHHHHhcCC
Confidence 999999999999999887 888 77775 66555 356 788 999999999977
No 7
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.53 E-value=7.3e-15 Score=121.45 Aligned_cols=118 Identities=20% Similarity=0.287 Sum_probs=104.2
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCch
Q psy1198 123 ATKAQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEALPR 202 (249)
Q Consensus 123 ~~rl~~Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~ 202 (249)
...++.++..|++ +|+..|..|+..|+++++. ++++...+...++||.|+++|+.++ ++++..|+|+|.||+...++
T Consensus 11 ~~~~~~~~~~L~s-~~~~~~~~a~~~L~~~l~~-~~~~~~~~~~~g~i~~L~~lL~~~~-~~v~~~a~~~L~~l~~~~~~ 87 (252)
T 4db8_A 11 GSELPQMTQQLNS-DDMQEQLSATRKFSQILSD-GNEQIQAVIDAGALPALVQLLSSPN-EQILQEALWALSNIASGGNE 87 (252)
T ss_dssp TCSHHHHHHHHHS-SCSSHHHHHHHHHHHHHHH-HHHHHHHHHHTTHHHHHHHGGGCSC-HHHHHHHHHHHHHHTTSCHH
T ss_pred cchHHHHHHHHcC-CCHHHHHHHHHHHHHHHcC-CCchHHHHHHcCcHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCCHH
Confidence 3568999999999 5999999999999999998 4555555767899999999998764 99999999999999999999
Q ss_pred hHHHHh--ccHHHHHHHhhcCCChhHHHHHHHHHHHhhhhchhH
Q psy1198 203 SSAVVL--DAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRHSKA 244 (249)
Q Consensus 203 qT~~VV--GAVPiL~~kLLsi~yiDVAEQALwALenISgD~p~a 244 (249)
....++ |+||.|++ |+..++.++.++|+|+|.||+.+.+..
T Consensus 88 ~~~~i~~~g~i~~L~~-lL~~~~~~v~~~a~~~L~~l~~~~~~~ 130 (252)
T 4db8_A 88 QIQAVIDAGALPALVQ-LLSSPNEQILQEALWALSNIASGGNEQ 130 (252)
T ss_dssp HHHHHHHTTHHHHHHH-GGGCSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred HHHHHHHcCCHHHHHH-HHcCCCHHHHHHHHHHHHHhhcCCchH
Confidence 988888 99999997 777789999999999999999887654
No 8
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=99.52 E-value=2.2e-14 Score=133.05 Aligned_cols=111 Identities=14% Similarity=0.079 Sum_probs=96.7
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCC-CCCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchh
Q psy1198 125 KAQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLT-GFPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEALPRS 203 (249)
Q Consensus 125 rl~~Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~-~fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~q 203 (249)
.++.+|..|++ +|+..|..|+..|+++. . +++++. .+...|.||.||++|+. +++++|+.|+|||+||+..+++.
T Consensus 3 ~l~~lv~~L~s-~~~~~q~~A~~~L~~l~-~-~~~~~~~~i~~~g~i~~Lv~lL~s-~~~~~~~~A~~aL~nLa~~~~~~ 78 (457)
T 1xm9_A 3 TIPKAVQYLSS-QDEKYQAIGAYYIQHTC-F-QDESAKQQVYQLGGICKLVDLLRS-PNQNVQQAAAGALRNLVFRSTTN 78 (457)
T ss_dssp CHHHHHHHHHS-SCTHHHHHHHHHHHHHT-S-SCSSHHHHHHHTTHHHHHHHHTTS-SCHHHHHHHHHHHHHHHSSCHHH
T ss_pred CHHHHHHHHCC-CCHHHHHHHHHHHHHHH-c-CChHHHHHHHHcCCHHHHHHHHcC-CCHHHHHHHHHHHHHHhcCCHHH
Confidence 47889999999 59999999999999965 3 344444 46678999999999985 57999999999999999998999
Q ss_pred HHHHh--ccHHHHHHHhhc-CCChhHHHHHHHHHHHhhhh
Q psy1198 204 SAVVL--DAVPTFLEKLQV-IQCMDVAEQSLTALEMLSRR 240 (249)
Q Consensus 204 T~~VV--GAVPiL~~kLLs-i~yiDVAEQALwALenISgD 240 (249)
...|+ |+||.|++ |+. .++.++.|+++|+|.|||.+
T Consensus 79 k~~i~~~G~i~~Lv~-lL~~~~~~~~~~~a~~aL~nLa~~ 117 (457)
T 1xm9_A 79 KLETRRQNGIREAVS-LLRRTGNAEIQKQLTGLLWNLSST 117 (457)
T ss_dssp HHHHHHTTCHHHHHH-HHTTCCCHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHcCCHHHHHH-HHhhCCCHHHHHHHHHHHHHHhcC
Confidence 99888 99999997 555 78899999999999999986
No 9
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.44 E-value=7.2e-14 Score=122.82 Aligned_cols=115 Identities=17% Similarity=0.176 Sum_probs=94.7
Q ss_pred HHHHHHHHHHhcCCCH--HHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCc
Q psy1198 124 TKAQQLLVSLQAIGDE--DQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEALP 201 (249)
Q Consensus 124 ~rl~~Ll~~L~S~~D~--~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp 201 (249)
..++.+|+.|++ +|+ ..|..|...++. |+..++++...+...|.||.||++|+. +++++|++|||+|.||+...+
T Consensus 8 ~~i~~lV~lL~s-~~~~~~~q~~Aa~~l~~-L~~~~~~~r~~I~~~G~Ip~LV~lL~s-~~~~vq~~Aa~aL~nLa~~~~ 84 (233)
T 3tt9_A 8 MTLERAVSMLEA-DHMLPSRISAAATFIQH-ECFQKSEARKRVNQLRGILKLLQLLKV-QNEDVQRAVCGALRNLVFEDN 84 (233)
T ss_dssp CCHHHHHHTCCS-SCCCHHHHHHHHHHHHH-HHHHCHHHHHHHHHTTHHHHHHHGGGC-CCHHHHHHHHHHHHHHHTTCH
T ss_pred ccHHHHHHHhCC-CCchHHHHHHHHHHHHH-HHcCCcHHHHHHHHcCCHHHHHHHHcC-CCHHHHHHHHHHHHHHHhCCH
Confidence 468999999998 476 778888877754 555444454456677999999999987 469999999999999999999
Q ss_pred hhHHHHh--ccHHHHHHHhhcCCChhHHHHHHHHHHHhhhhc
Q psy1198 202 RSSAVVL--DAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRH 241 (249)
Q Consensus 202 ~qT~~VV--GAVPiL~~kLLsi~yiDVAEQALwALenISgD~ 241 (249)
++...|+ |+||.|++.|.+..+.++.|++..+|-|+|...
T Consensus 85 ~nk~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~ 126 (233)
T 3tt9_A 85 DNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSND 126 (233)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSG
T ss_pred HHHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCh
Confidence 9999888 999999974434678999999999999998754
No 10
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.39 E-value=8.2e-13 Score=106.60 Aligned_cols=115 Identities=19% Similarity=0.271 Sum_probs=95.5
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchhHH
Q psy1198 126 AQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEALPRSSA 205 (249)
Q Consensus 126 l~~Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~qT~ 205 (249)
++.++.-|++ +|+..+..|+..|+.+-.. +++....+...++||.|+++|+.+ +++++..|+|+|.||+...++...
T Consensus 14 ~~~l~~LL~s-~~~~v~~~a~~~L~~l~~~-~~~~~~~i~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~ 90 (210)
T 4db6_A 14 LPQMVQQLNS-PDQQELQSALRKLSQIASG-GNEQIQAVIDAGALPALVQLLSSP-NEQILQEALWALSNIASGGNEQIQ 90 (210)
T ss_dssp HHHHHHHTTC-SCHHHHHHHHHHHHHHHTS-CHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred hHHHHHHhcC-CCHHHHHHHHHHHHHHHcC-CHHHHHHHHHcCCHHHHHHHHcCC-CHHHHHHHHHHHHHHhcCCcHHHH
Confidence 4566666787 5999999999999887533 333334466679999999999865 699999999999999999999888
Q ss_pred HHh--ccHHHHHHHhhcCCChhHHHHHHHHHHHhhhhchhH
Q psy1198 206 VVL--DAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRHSKA 244 (249)
Q Consensus 206 ~VV--GAVPiL~~kLLsi~yiDVAEQALwALenISgD~p~a 244 (249)
.++ |+||.|++ |+..++.++.+.|+|+|.||+.+.+..
T Consensus 91 ~i~~~g~i~~L~~-lL~~~~~~v~~~a~~~L~~l~~~~~~~ 130 (210)
T 4db6_A 91 AVIDAGALPALVQ-LLSSPNEQILQEALWALSNIASGGNEQ 130 (210)
T ss_dssp HHHHTTCHHHHHH-HTTCSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred HHHHCCCHHHHHH-HHcCCcHHHHHHHHHHHHHHHcCCHHH
Confidence 888 99999997 777789999999999999999766543
No 11
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.30 E-value=5.4e-12 Score=102.67 Aligned_cols=115 Identities=16% Similarity=0.231 Sum_probs=97.4
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchhH
Q psy1198 125 KAQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEALPRSS 204 (249)
Q Consensus 125 rl~~Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~qT 204 (249)
.++.+++.|++ +|+..+..|+..|+++..... +....+...++||.|+++|+.+ +++++..|+|+|.||+...++..
T Consensus 3 ~i~~L~~~L~~-~~~~~~~~a~~~L~~l~~~~~-~~~~~~~~~g~i~~L~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~ 79 (252)
T 4hxt_A 3 DVEKLVKLLTS-TDSETQKEAARDLAEIASGPA-SAIKAIVDAGGVEVLVKLLTST-DSEVQKEAARALANIASGPDEAI 79 (252)
T ss_dssp HHHHHHHHTTC-SCHHHHHHHHHHHHHHHTSCH-HHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHHHH
T ss_pred cHHHHHHHHcC-CCHHHHHHHHHHHHHHhcCCc-HHHHHHHHCCCHHHHHHHHhCC-CHHHHHHHHHHHHHHHcCChHHH
Confidence 47889999998 589999999999999886632 2333455679999999999875 59999999999999999888888
Q ss_pred HHHh--ccHHHHHHHhhcCCChhHHHHHHHHHHHhhhhchh
Q psy1198 205 AVVL--DAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRHSK 243 (249)
Q Consensus 205 ~~VV--GAVPiL~~kLLsi~yiDVAEQALwALenISgD~p~ 243 (249)
..++ |+||.|++ |+..++.++.+.|+|+|.||+...+.
T Consensus 80 ~~~~~~~~i~~l~~-ll~~~~~~v~~~a~~~L~~l~~~~~~ 119 (252)
T 4hxt_A 80 KAIVDAGGVEVLVK-LLTSTDSEVQKEAARALANIASGPDE 119 (252)
T ss_dssp HHHHHTTHHHHHHH-HTTCSSHHHHHHHHHHHHHHTTSCHH
T ss_pred HHHHHCCCHHHHHH-HHcCCCHHHHHHHHHHHHHHHcCCHH
Confidence 8777 99999997 77778999999999999999975554
No 12
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.30 E-value=4.4e-12 Score=113.88 Aligned_cols=117 Identities=15% Similarity=0.157 Sum_probs=94.6
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchhHH
Q psy1198 126 AQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEALPRSSA 205 (249)
Q Consensus 126 l~~Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~qT~ 205 (249)
++.|+.-|+++.++..+-.|+-.|+.+. ..+++....|...+.+|.|+++|+.. ++++|..|||+|.||+++.+++..
T Consensus 126 l~~Ll~LL~~~~~~~v~~~A~~ALsnl~-~~~~~~~~~~~~~ggi~~L~~lL~~~-d~~v~~~A~~aLs~L~~~~~~~~~ 203 (296)
T 1xqr_A 126 LRKLLRLLDRDACDTVRVKALFAISCLV-REQEAGLLQFLRLDGFSVLMRAMQQQ-VQKLKVKSAFLLQNLLVGHPEHKG 203 (296)
T ss_dssp HHHHHHHHHHCSCHHHHHHHHHHHHHHH-TTCHHHHHHHHHTTHHHHHHHHHHSS-CHHHHHHHHHHHHHHHHHCGGGHH
T ss_pred HHHHHHHHccCCCHHHHHHHHHHHHHHH-cCCcHHHHHHHHCCCHHHHHHHHcCC-CHHHHHHHHHHHHHHHhCChHHHH
Confidence 4666767775336667777777777654 23333334466679999999999864 699999999999999999999999
Q ss_pred HHh--ccHHHHHHHhhcCCChhHHHHHHHHHHHhhhhchhHH
Q psy1198 206 VVL--DAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRHSKAI 245 (249)
Q Consensus 206 ~VV--GAVPiL~~kLLsi~yiDVAEQALwALenISgD~p~aI 245 (249)
.|+ |+||.|++ |+..++.+|.|+++++|+||..+++..+
T Consensus 204 ~vv~~g~i~~Lv~-LL~~~d~~v~~~al~aL~~l~~~~~~~~ 244 (296)
T 1xqr_A 204 TLCSMGMVQQLVA-LVRTEHSPFHEHVLGALCSLVTDFPQGV 244 (296)
T ss_dssp HHHHTTHHHHHHH-HHTSCCSTHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHcCCHHHHHH-HHcCCChhHHHHHHHHHHHHHhCChhHH
Confidence 998 99999997 8888999999999999999999977543
No 13
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.30 E-value=6e-12 Score=101.51 Aligned_cols=114 Identities=18% Similarity=0.242 Sum_probs=94.1
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchhHH
Q psy1198 126 AQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEALPRSSA 205 (249)
Q Consensus 126 l~~Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~qT~ 205 (249)
++.|++-|++ +|+..+..++.-|+++... +++....+...+.||.|+++|+.+ +++++..|+|+|.||+...++...
T Consensus 56 i~~L~~lL~~-~~~~v~~~a~~~L~~l~~~-~~~~~~~i~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~ 132 (210)
T 4db6_A 56 LPALVQLLSS-PNEQILQEALWALSNIASG-GNEQIQAVIDAGALPALVQLLSSP-NEQILQEALWALSNIASGGNEQIQ 132 (210)
T ss_dssp HHHHHHHTTC-SCHHHHHHHHHHHHHHTTS-CHHHHHHHHHTTCHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred HHHHHHHHcC-CCHHHHHHHHHHHHHHhcC-CcHHHHHHHHCCCHHHHHHHHcCC-cHHHHHHHHHHHHHHHcCCHHHHH
Confidence 5777888888 5899999999999887533 222222344578999999999865 699999999999999999998888
Q ss_pred HHh--ccHHHHHHHhhcCCChhHHHHHHHHHHHhhhhchh
Q psy1198 206 VVL--DAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRHSK 243 (249)
Q Consensus 206 ~VV--GAVPiL~~kLLsi~yiDVAEQALwALenISgD~p~ 243 (249)
.++ |+||.|++ |+..++.++.+.|+|+|.||+...+.
T Consensus 133 ~~~~~~~i~~L~~-ll~~~~~~v~~~a~~aL~~l~~~~~~ 171 (210)
T 4db6_A 133 AVIDAGALPALVQ-LLSSPNEQILQEALWALSNIASGGNE 171 (210)
T ss_dssp HHHHTTHHHHHHH-HTTCSCHHHHHHHHHHHHHHHTSCHH
T ss_pred HHHHcCcHHHHHH-HHcCCCHHHHHHHHHHHHHHHcCCcH
Confidence 888 99999997 77778999999999999999987554
No 14
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=99.23 E-value=9.5e-12 Score=115.37 Aligned_cols=114 Identities=13% Similarity=0.104 Sum_probs=89.7
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchh
Q psy1198 124 TKAQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEALPRS 203 (249)
Q Consensus 124 ~rl~~Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~q 203 (249)
.-++.||+-|++ +++..|..|+..|+++.+. ++++-..+...|.||.||++|+...++++|.+|+|||.||+.. ++.
T Consensus 44 g~i~~Lv~lL~s-~~~~~~~~A~~aL~nLa~~-~~~~k~~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~-~~~ 120 (457)
T 1xm9_A 44 GGICKLVDLLRS-PNQNVQQAAAGALRNLVFR-STTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSST-DEL 120 (457)
T ss_dssp THHHHHHHHTTS-SCHHHHHHHHHHHHHHHSS-CHHHHHHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS-SST
T ss_pred CCHHHHHHHHcC-CCHHHHHHHHHHHHHHhcC-CHHHHHHHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcC-HHh
Confidence 347889999998 6999999999999998863 2232223556799999999998666799999999999999998 655
Q ss_pred HHHHh-ccHHHHHHHhh-------cCC--------ChhHHHHHHHHHHHhhhh
Q psy1198 204 SAVVL-DAVPTFLEKLQ-------VIQ--------CMDVAEQSLTALEMLSRR 240 (249)
Q Consensus 204 T~~VV-GAVPiL~~kLL-------si~--------yiDVAEQALwALenISgD 240 (249)
...|+ |+||.|++.|. ..+ ..+|.++|+|+|.||+.+
T Consensus 121 ~~~i~~g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~a~~aL~nLs~~ 173 (457)
T 1xm9_A 121 KEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSA 173 (457)
T ss_dssp HHHHHHHHHHHHHHHTTHHHHTCC---------CCCHHHHHHHHHHHHHHTTS
T ss_pred HHHHHhccHHHHHHHHhccccccccCccchhcccccHHHHHHHHHHHHHHccC
Confidence 55566 99999997442 223 455666999999999987
No 15
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.23 E-value=1.3e-11 Score=110.83 Aligned_cols=120 Identities=17% Similarity=0.158 Sum_probs=93.9
Q ss_pred hhHHHHHHHHHHHhcC-----------CCHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHH-hcCCCCCccHHHH
Q psy1198 121 DTATKAQQLLVSLQAI-----------GDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALIT-LLSMDHNFDMMNN 188 (249)
Q Consensus 121 ~~~~rl~~Ll~~L~S~-----------~D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~-iLs~e~n~dLQ~e 188 (249)
....+++++++.|++. .+......|+..|.+++-. .++-..|...|.+|.||. +|+. .+++++..
T Consensus 25 d~~~~mk~~l~vl~~~~~~~~~~~~~~~~~e~k~~Al~~L~~lv~~--~dna~~~~~~G~l~~Lv~~lL~s-~~~~vr~~ 101 (296)
T 1xqr_A 25 GEVEQMKSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLCEN--MDNAADFCQLSGMHLLVGRYLEA-GAAGLRWR 101 (296)
T ss_dssp HHHHHHHHHHHHHHSCCCSSCCHHHHHHHHHHHHHHHHHHHHHHTS--HHHHHHHHHTTHHHHHHHTTTTC-SSHHHHHH
T ss_pred CHHHHHHHHHHHHhCCCcccccccccCCCHHHHHHHHHHHHHHHhC--hhhHHHHHHcCCHHHHHHHHHcC-CCHHHHHH
Confidence 4567889999999872 1124566788888777643 122223556689999999 9986 46999999
Q ss_pred HHHHHHHHHhcCchhHHHHh--ccHHHHHHHhhcCCChhHHHHHHHHHHHhhhhchh
Q psy1198 189 ACRALTYMMEALPRSSAVVL--DAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRHSK 243 (249)
Q Consensus 189 AArALTNIasgtp~qT~~VV--GAVPiL~~kLLsi~yiDVAEQALwALenISgD~p~ 243 (249)
|||||.||+...|++...|+ |+||.|++.|.+.+...+.+.|+|||.||++.++.
T Consensus 102 Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~ 158 (296)
T 1xqr_A 102 AAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEA 158 (296)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcH
Confidence 99999999999999999888 99999997444345789999999999999987654
No 16
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=99.19 E-value=2e-11 Score=119.89 Aligned_cols=113 Identities=19% Similarity=0.215 Sum_probs=93.7
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhc-Cchh
Q psy1198 125 KAQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEA-LPRS 203 (249)
Q Consensus 125 rl~~Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasg-tp~q 203 (249)
.++.+|+.|++ +|+..|.+|...|+.+- ..++++-..+...|.||.||++|+.+ ++++|+.|+|||.||+.. .++.
T Consensus 49 ~i~~LV~~L~s-~~~~~q~~Aa~~L~~La-~~~~~~k~~V~~~G~Ip~LV~LL~s~-~~~vq~~Aa~AL~nLa~~~~~~n 125 (584)
T 3l6x_A 49 ELPEVIAMLGF-RLDAVKSNAAAYLQHLC-YRNDKVKTDVRKLKGIPVLVGLLDHP-KKEVHLGACGALKNISFGRDQDN 125 (584)
T ss_dssp CHHHHHHHTTC-SCHHHHHHHHHHHHHHH-TTCHHHHHHHHHTTHHHHHHHGGGCS-SHHHHHHHHHHHHHHTSSSCHHH
T ss_pred cHHHHHHHHCC-CCHHHHHHHHHHHHHHH-cCChHHHHHHHHcCCcHHHHHHHCCC-CHHHHHHHHHHHHHHHccCCHHH
Confidence 58999999998 59999999998886654 43444444466679999999999864 699999999999999997 5778
Q ss_pred HHHHh--ccHHHHHHHhhcCCChhHHHHHHHHHHHhhhh
Q psy1198 204 SAVVL--DAVPTFLEKLQVIQCMDVAEQSLTALEMLSRR 240 (249)
Q Consensus 204 T~~VV--GAVPiL~~kLLsi~yiDVAEQALwALenISgD 240 (249)
...|+ |+||.|++.|.+.++.++.|++.|||-|+|..
T Consensus 126 k~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~ 164 (584)
T 3l6x_A 126 KIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSH 164 (584)
T ss_dssp HHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCC
Confidence 88787 99999997444446889999999999999874
No 17
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.18 E-value=3.7e-11 Score=97.74 Aligned_cols=115 Identities=17% Similarity=0.195 Sum_probs=94.6
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchhH
Q psy1198 125 KAQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEALPRSS 204 (249)
Q Consensus 125 rl~~Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~qT 204 (249)
-++.|++-|++ +|+..+..++.-|+++... ++.....+...+++|.|+++|+. .+++++..|+|+|.||+...++..
T Consensus 129 ~i~~L~~~l~~-~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~~~~i~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~~~~~ 205 (252)
T 4hxt_A 129 GVEVLVKLLTS-TDSEVQKEAARALANIASG-PDEAIKAIVDAGGVEVLVKLLTS-TDSEVQKEAARALANIASGPTSAI 205 (252)
T ss_dssp HHHHHHHHTTC-SCHHHHHHHHHHHHHHTTS-CHHHHHHHHHTTHHHHHHHHTTC-SCHHHHHHHHHHHHHHTTSBHHHH
T ss_pred CHHHHHHHHcC-CCHHHHHHHHHHHHHHHcC-CHHHHHHHHHCcCHHHHHHHHCC-CCHHHHHHHHHHHHHHHcCCHHHH
Confidence 36777777887 5888899999999887643 22222235557999999999985 468999999999999999999888
Q ss_pred HHHh--ccHHHHHHHhhcCCChhHHHHHHHHHHHhhhhchh
Q psy1198 205 AVVL--DAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRHSK 243 (249)
Q Consensus 205 ~~VV--GAVPiL~~kLLsi~yiDVAEQALwALenISgD~p~ 243 (249)
..++ |+||.|++ |+..+..++.|+|+|+|.||....+.
T Consensus 206 ~~l~~~~~i~~L~~-ll~~~~~~v~~~a~~~L~~l~~~~~~ 245 (252)
T 4hxt_A 206 KAIVDAGGVEVLQK-LLTSTDSEVQKEAQRALENIKSGGWL 245 (252)
T ss_dssp HHHHHTTHHHHHHH-GGGCSCHHHHHHHHHHHHHHHHTCBC
T ss_pred HHHHHCCCHHHHHH-HHCCCcHHHHHHHHHHHHHHHcCCCc
Confidence 8888 99999997 77778899999999999999987654
No 18
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.16 E-value=9.3e-11 Score=96.75 Aligned_cols=114 Identities=18% Similarity=0.220 Sum_probs=92.5
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCC-CCCCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchh
Q psy1198 125 KAQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTL-TGFPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEALPRS 203 (249)
Q Consensus 125 rl~~Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I-~~fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~q 203 (249)
-++.|+.-|++ +++..+..++.-|+++... ++.- ..+...++||.|+++|+.+ +++++..|+|+|.||+...++.
T Consensus 97 ~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~~--~~~~~~~~~~~~~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~ 172 (252)
T 4db8_A 97 ALPALVQLLSS-PNEQILQEALWALSNIASG--GNEQIQAVIDAGALPALVQLLSSP-NEQILQEALWALSNIASGGNEQ 172 (252)
T ss_dssp HHHHHHHGGGC-SCHHHHHHHHHHHHHHTTS--CHHHHHHHHHTTHHHHHHHGGGCS-CHHHHHHHHHHHHHHTTSCHHH
T ss_pred CHHHHHHHHcC-CCHHHHHHHHHHHHHhhcC--CchHHHHHHHCCCHHHHHHHHhCC-CHHHHHHHHHHHHHHHcCChHH
Confidence 35667777787 5888888888888877433 2221 2355568999999999864 6899999999999999999988
Q ss_pred HHHHh--ccHHHHHHHhhcCCChhHHHHHHHHHHHhhhhchh
Q psy1198 204 SAVVL--DAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRHSK 243 (249)
Q Consensus 204 T~~VV--GAVPiL~~kLLsi~yiDVAEQALwALenISgD~p~ 243 (249)
...++ |+||.|++ |+..++.++.+.|+|+|.||+...+.
T Consensus 173 ~~~~~~~~~i~~L~~-ll~~~~~~v~~~a~~~L~~l~~~~~~ 213 (252)
T 4db8_A 173 IQAVIDAGALPALVQ-LLSSPNEQILQEALWALSNIASGGNE 213 (252)
T ss_dssp HHHHHHTTCHHHHHH-GGGCSSHHHHHHHHHHHHHHTTSCHH
T ss_pred HHHHHHCCCHHHHHH-HHCCCCHHHHHHHHHHHHHHhcCCHH
Confidence 88887 99999997 77778999999999999999965554
No 19
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.08 E-value=2.5e-10 Score=100.77 Aligned_cols=115 Identities=17% Similarity=0.163 Sum_probs=93.0
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchhH
Q psy1198 125 KAQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEALPRSS 204 (249)
Q Consensus 125 rl~~Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~qT 204 (249)
-++.+++.|++.+++..|..++.-|+++.....+ ....+...++||.|+++|+.+ +++++..|+|+|.||++..++..
T Consensus 65 ~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~-~~~~~~~~~~i~~L~~lL~~~-~~~vr~~a~~~L~~l~~~~~~~~ 142 (450)
T 2jdq_A 65 VVARFVEFLKRKENCTLQFESAWVLTNIASGNSL-QTRIVIQAGAVPIFIELLSSE-FEDVQEQAVWALGNIAGDSTMCR 142 (450)
T ss_dssp HHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHH-HHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHH-HHHHHHhCCCHHHHHHHHcCC-CHHHHHHHHHHHHHHccCCHHHH
Confidence 4778888888744889999999999998864311 111233468999999999864 79999999999999999988887
Q ss_pred HHHh--ccHHHHHHHhhcCCChhHHHHHHHHHHHhhhhc
Q psy1198 205 AVVL--DAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRH 241 (249)
Q Consensus 205 ~~VV--GAVPiL~~kLLsi~yiDVAEQALwALenISgD~ 241 (249)
..++ ++||.|++.|.+.+..++.++++|+|.||+.+.
T Consensus 143 ~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~ 181 (450)
T 2jdq_A 143 DYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGK 181 (450)
T ss_dssp HHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCS
T ss_pred HHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCC
Confidence 7777 999999974443478999999999999999765
No 20
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=99.07 E-value=1.5e-10 Score=106.21 Aligned_cols=118 Identities=18% Similarity=0.153 Sum_probs=87.9
Q ss_pred HHHHHHHHhcCCCH---HHHHHHHHHHHHHhhc--CCCCCCCCCCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcC
Q psy1198 126 AQQLLVSLQAIGDE---DQQLQAVVEMCQMLVM--GNEDTLTGFPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEAL 200 (249)
Q Consensus 126 l~~Ll~~L~S~~D~---~~QLeAL~eLrelLSm--snep~I~~fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgt 200 (249)
++.|++-|++..+. ..+-.++--|+.+-+. .+++....+...+.||.||++|+. .++++|.+|+|+|.||+...
T Consensus 216 i~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~-~~~~v~~~A~~aL~nLa~~~ 294 (354)
T 3nmw_A 216 LAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKS-HSLTIVSNACGTLWNLSARN 294 (354)
T ss_dssp HHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTC-SCHHHHHHHHHHHHHHTSSC
T ss_pred HHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcC-CChHHHHHHHHHHHHHhCCC
Confidence 34455566653222 2444455445443321 223333335567999999999986 46889999999999999889
Q ss_pred chhHHHHh--ccHHHHHHHhhcCCChhHHHHHHHHHHHhhhhchhHH
Q psy1198 201 PRSSAVVL--DAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRHSKAI 245 (249)
Q Consensus 201 p~qT~~VV--GAVPiL~~kLLsi~yiDVAEQALwALenISgD~p~aI 245 (249)
+++...++ |+||.|++ |+.+.+.++.|.|.|+|.||+.+.|..+
T Consensus 295 ~~~~~~i~~~G~i~~Lv~-LL~s~~~~i~~~A~~aL~nL~~~~~~~~ 340 (354)
T 3nmw_A 295 PKDQEALWDMGAVSMLKN-LIHSKHKMIAMGSAAALRNLMANRPAKY 340 (354)
T ss_dssp HHHHHHHHHTTHHHHHHT-TTTCSSHHHHHHHHHHHHHHHTTCCGGG
T ss_pred HHHHHHHHHCCCHHHHHH-HHhCCCHHHHHHHHHHHHHHHcCCHHHH
Confidence 99998888 99999996 8888999999999999999999887654
No 21
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.07 E-value=3e-10 Score=99.76 Aligned_cols=75 Identities=17% Similarity=0.139 Sum_probs=66.8
Q ss_pred cChHHHHHHhcCCCCC-ccHHHHHHHHHHHHHhcCchhHHHHh--ccHHHHHHHhhcCCChhHHHHHHHHHHHhhhhch
Q psy1198 167 KQVVPALITLLSMDHN-FDMMNNACRALTYMMEALPRSSAVVL--DAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRHS 242 (249)
Q Consensus 167 ~glVP~LV~iLs~e~n-~dLQ~eAArALTNIasgtp~qT~~VV--GAVPiL~~kLLsi~yiDVAEQALwALenISgD~p 242 (249)
.--+|.||++|+.++. +++|..|+|+|.|++...++....|+ |+||.|++ ||.+++.++.|+|+|||.||+.+++
T Consensus 7 ~~~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~-lL~s~~~~vq~~Aa~aL~nLa~~~~ 84 (233)
T 3tt9_A 7 EMTLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQ-LLKVQNEDVQRAVCGALRNLVFEDN 84 (233)
T ss_dssp CCCHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHH-GGGCCCHHHHHHHHHHHHHHHTTCH
T ss_pred hccHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHH-HHcCCCHHHHHHHHHHHHHHHhCCH
Confidence 4569999999987652 38999999999999999999988888 99999997 7788999999999999999998655
No 22
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.02 E-value=3.2e-10 Score=104.28 Aligned_cols=113 Identities=12% Similarity=0.189 Sum_probs=92.0
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchhHH
Q psy1198 126 AQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEALPRSSA 205 (249)
Q Consensus 126 l~~Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~qT~ 205 (249)
++.|+.-|++ .++..+..++.-|+.+.... ++....+...+++|.|+++|+.+.+++++.+|||+|.||+.+.+++..
T Consensus 288 v~~Lv~lL~~-~~~~v~~~a~~~L~nl~~~~-~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~ 365 (528)
T 4b8j_A 288 CPRLVELLLH-PSPSVLIPALRTVGNIVTGD-DAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQ 365 (528)
T ss_dssp HHHHHHHTTC-SCHHHHHHHHHHHHHHTTSC-HHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHcC-CChhHHHHHHHHHHHHHcCC-HHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHH
Confidence 4667777777 48888888999888876532 222222344689999999999765799999999999999999998888
Q ss_pred HHh--ccHHHHHHHhhcCCChhHHHHHHHHHHHhhhhc
Q psy1198 206 VVL--DAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRH 241 (249)
Q Consensus 206 ~VV--GAVPiL~~kLLsi~yiDVAEQALwALenISgD~ 241 (249)
.++ ++||.|++ |+.....++.+.|+|+|.||+...
T Consensus 366 ~~~~~~~i~~L~~-lL~~~~~~v~~~a~~aL~nl~~~~ 402 (528)
T 4b8j_A 366 AVINAGIIGPLVN-LLQTAEFDIKKEAAWAISNATSGG 402 (528)
T ss_dssp HHHHTTCHHHHHH-HHHHSCHHHHHHHHHHHHHHHHHS
T ss_pred HHHHCCCHHHHHH-HHhcCCHHHHHHHHHHHHHHHcCC
Confidence 888 99999997 666678999999999999999873
No 23
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=99.01 E-value=3.1e-10 Score=107.96 Aligned_cols=116 Identities=18% Similarity=0.159 Sum_probs=86.6
Q ss_pred HHHHHHHHhcCCCH---HHHHHHHHHHHHHhhc--CCCCCCCCCCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcC
Q psy1198 126 AQQLLVSLQAIGDE---DQQLQAVVEMCQMLVM--GNEDTLTGFPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEAL 200 (249)
Q Consensus 126 l~~Ll~~L~S~~D~---~~QLeAL~eLrelLSm--snep~I~~fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgt 200 (249)
++-|++-|++..+. ..+-.++--|+.+-+. .+++....+...+.||.||++|+. .++++|.+|||+|.||+...
T Consensus 332 l~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~-~~~~v~~~A~~aL~nLa~~~ 410 (458)
T 3nmz_A 332 LAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKS-HSLTIVSNACGTLWNLSARN 410 (458)
T ss_dssp HHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSC-SCHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcC-CChHHHHHHHHHHHHHHcCC
Confidence 34445555553222 2444555555544321 223333345567999999999986 46889999999999999999
Q ss_pred chhHHHHh--ccHHHHHHHhhcCCChhHHHHHHHHHHHhhhhchh
Q psy1198 201 PRSSAVVL--DAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRHSK 243 (249)
Q Consensus 201 p~qT~~VV--GAVPiL~~kLLsi~yiDVAEQALwALenISgD~p~ 243 (249)
+++...++ |+||.|++ |+...+.++.|.|.|+|.||+...|.
T Consensus 411 ~~~~~~i~~~G~I~~Lv~-LL~s~~~~v~~~Aa~AL~nL~~~~p~ 454 (458)
T 3nmz_A 411 PKDQEALWDMGAVSMLKN-LIHSKHKMIAMGSAAALRNLMANRPA 454 (458)
T ss_dssp HHHHHHHHHHTHHHHHHT-TTTCSSHHHHHHHHHHHHHHHTCCSC
T ss_pred HHHHHHHHHCCCHHHHHH-HHhCCCHHHHHHHHHHHHHHHcCCHh
Confidence 99999888 99999997 88888999999999999999988765
No 24
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.00 E-value=3.6e-10 Score=105.79 Aligned_cols=114 Identities=11% Similarity=0.080 Sum_probs=93.2
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchhHH
Q psy1198 126 AQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEALPRSSA 205 (249)
Q Consensus 126 l~~Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~qT~ 205 (249)
++.|++-|.+ +++..+..++.-|+.+.+.. +.....+...+++|.|+++|+. .+++++.+|||+|.||+.+.+++..
T Consensus 295 i~~Lv~lL~~-~~~~v~~~a~~aL~nl~~~~-~~~~~~i~~~g~l~~L~~LL~~-~~~~i~~~a~~aL~nl~~~~~~~~~ 371 (529)
T 3tpo_A 295 VPQLVKLLGA-TELPIVTPALRAIGNIVTGT-DEQTQKVIDAGALAVFPSLLTN-PKTNIQKEATWTMSNITAGRQDQIQ 371 (529)
T ss_dssp HHHHHHHHTC-SCHHHHHHHHHHHHHHTTSC-HHHHHHHHHTTGGGGHHHHTTC-SSHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred hHHHHHHhcC-CChhHHHHHHHHHHHHHccc-hHHHHHHhhcccHHHHHHHHcC-CCHHHHHHHHHHHHHHhcccHHHHH
Confidence 4567777787 58889999999999887542 2111224457999999999985 4689999999999999999999999
Q ss_pred HHh--ccHHHHHHHhhcCCChhHHHHHHHHHHHhhhhchh
Q psy1198 206 VVL--DAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRHSK 243 (249)
Q Consensus 206 ~VV--GAVPiL~~kLLsi~yiDVAEQALwALenISgD~p~ 243 (249)
.|+ |+||.|++ |+.....++.+.|+|||.|++.....
T Consensus 372 ~v~~~g~i~~Lv~-lL~~~~~~v~~~A~~aL~nl~~~~~~ 410 (529)
T 3tpo_A 372 QVVNHGLVPFLVG-VLSKADFKTQKAAAWAITNYTSGGTV 410 (529)
T ss_dssp HHHHTTHHHHHHH-HHHSSCHHHHHHHHHHHHHHHHHSCH
T ss_pred HHHhcCcHHHHHH-HhcCCCHHHHHHHHHHHHHHHcCCCH
Confidence 888 99999997 67778899999999999999875433
No 25
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=98.96 E-value=1.6e-09 Score=97.94 Aligned_cols=113 Identities=12% Similarity=0.122 Sum_probs=92.3
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchhH
Q psy1198 125 KAQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEALPRSS 204 (249)
Q Consensus 125 rl~~Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~qT 204 (249)
-++.++..|++.+|+..+..++..|+++ +... ++...+...+.||.|+++|+.+ ++++|..|+|+|.||+...+...
T Consensus 60 ~i~~Lv~~L~~~~~~~~~~~a~~~L~~l-s~~~-~~~~~i~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~ 136 (529)
T 1jdh_A 60 MVSAIVRTMQNTNDVETARCTAGTLHNL-SHHR-EGLLAIFKSGGIPALVKMLGSP-VDSVLFYAITTLHNLLLHQEGAK 136 (529)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHHHHHHH-TTSH-HHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHHHHCTTHH
T ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHH-HcCc-hhHHHHHHcCCHHHHHHHHcCC-CHHHHHHHHHHHHHHhcCCcchH
Confidence 4677788887645889999999999984 4432 2333455679999999999875 59999999999999999988887
Q ss_pred HHHh--ccHHHHHHHhhcCCChhHHHHHHHHHHHhhhhc
Q psy1198 205 AVVL--DAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRH 241 (249)
Q Consensus 205 ~~VV--GAVPiL~~kLLsi~yiDVAEQALwALenISgD~ 241 (249)
..++ |+||.|++ |+..++.++.+.+..+|.||+..+
T Consensus 137 ~~i~~~g~i~~L~~-ll~~~~~~~~~~~~~~L~~la~~~ 174 (529)
T 1jdh_A 137 MAVRLAGGLQKMVA-LLNKTNVKFLAITTDCLQILAYGN 174 (529)
T ss_dssp HHHHHHTHHHHHHH-GGGCCCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHcCCHHHHHH-HHhcCCHHHHHHHHHHHHHHHhCC
Confidence 7777 99999997 777788999999999999998754
No 26
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=98.96 E-value=7e-10 Score=109.01 Aligned_cols=116 Identities=16% Similarity=0.165 Sum_probs=94.0
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchhH
Q psy1198 125 KAQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEALPRSS 204 (249)
Q Consensus 125 rl~~Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~qT 204 (249)
-++.||+-|++ +++..|..|+..|+.+-...++++-..+...|.||.||++|+..+++++|..|+|||.|++. .++.-
T Consensus 91 ~Ip~LV~LL~s-~~~~vq~~Aa~AL~nLa~~~~~~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~-~~~~k 168 (584)
T 3l6x_A 91 GIPVLVGLLDH-PKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSS-HDSIK 168 (584)
T ss_dssp HHHHHHHGGGC-SSHHHHHHHHHHHHHHTSSSCHHHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTT-SGGGH
T ss_pred CcHHHHHHHCC-CCHHHHHHHHHHHHHHHccCCHHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhC-Cchhh
Confidence 45778888888 59999999999999887543344444466789999999999976678999999999999987 56555
Q ss_pred HHHh-ccHHHHHHHhh-----------------cCCChhHHHHHHHHHHHhhhhch
Q psy1198 205 AVVL-DAVPTFLEKLQ-----------------VIQCMDVAEQSLTALEMLSRRHS 242 (249)
Q Consensus 205 ~~VV-GAVPiL~~kLL-----------------si~yiDVAEQALwALenISgD~p 242 (249)
..++ ++||.|++.|. ++++++|.|+|.|||.|+|.+++
T Consensus 169 ~~I~~~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~~V~~nAa~~L~NLs~~~~ 224 (584)
T 3l6x_A 169 MEIVDHALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERS 224 (584)
T ss_dssp HHHHHHTHHHHHHHTHHHHHCCC----------CCCCHHHHHHHHHHHHHHTSSCH
T ss_pred HHHHhccHHHHHHHHhcccccccccccccccccccccHHHHHHHHHHHHHHhcCCH
Confidence 6666 99999998542 34578999999999999998764
No 27
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=98.91 E-value=6e-10 Score=104.27 Aligned_cols=115 Identities=10% Similarity=0.085 Sum_probs=92.7
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchhHH
Q psy1198 126 AQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEALPRSSA 205 (249)
Q Consensus 126 l~~Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~qT~ 205 (249)
++.|++-|++ +++..+..++..|+.+.... +.....+...+++|.|+.+|+. .+++++.+|||+|.||+...+++..
T Consensus 276 i~~Lv~lL~~-~~~~v~~~al~aL~nl~~~~-~~~~~~i~~~g~l~~L~~LL~~-~~~~v~~~A~~aL~nl~a~~~~~~~ 352 (510)
T 3ul1_B 276 VPQLVKLLGA-TELPIVTPALRAIGNIVTGT-DEQTQKVIDAGALAVFPSLLTN-PKTNIQKEATWTMSNITAGRQDQIQ 352 (510)
T ss_dssp HHHHHHHHTC-SCHHHHHHHHHHHHHHTTSC-HHHHHHHHHTTGGGGCC-CTTC-SSHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred chhhhhhhcC-CChhhhhHHHHHHHHhhcCC-HHHHHHHhhccchHHHHHHhcC-CCHHHHHHHHHHHHHHHcCcHHHHH
Confidence 4667777887 58889999999998877542 2211224456899999999985 4689999999999999999999999
Q ss_pred HHh--ccHHHHHHHhhcCCChhHHHHHHHHHHHhhhhchhH
Q psy1198 206 VVL--DAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRHSKA 244 (249)
Q Consensus 206 ~VV--GAVPiL~~kLLsi~yiDVAEQALwALenISgD~p~a 244 (249)
.|+ |+||.|++ ++.....++.+.|+|||.|++.....+
T Consensus 353 ~v~~~g~i~~Lv~-lL~~~~~~v~~~Aa~aL~Nl~~~~~~~ 392 (510)
T 3ul1_B 353 QVVNHGLVPFLVG-VLSKADFKTQKEAAWAITNYTSGGTVE 392 (510)
T ss_dssp HHHHTTHHHHHHH-HHHSSCHHHHHHHHHHHHHHHHHCCHH
T ss_pred HHHhcCCHHHHHH-HHcCCCHHHHHHHHHHHHHHHccCCHH
Confidence 888 99999997 667788999999999999998765443
No 28
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=98.90 E-value=3.1e-09 Score=97.41 Aligned_cols=115 Identities=10% Similarity=0.139 Sum_probs=85.6
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCC-ccChHHHHHHhcCCCCCc---cHHHHHHHHHHHHHh---
Q psy1198 126 AQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFP-VKQVVPALITLLSMDHNF---DMMNNACRALTYMME--- 198 (249)
Q Consensus 126 l~~Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp-~~glVP~LV~iLs~e~n~---dLQ~eAArALTNIas--- 198 (249)
++.||+-|.+..++..+-.++.-|..+-... ++.-..+. ..+.||.||++|..++.. +++..|+|+|.||+.
T Consensus 172 Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~-~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a 250 (354)
T 3nmw_A 172 VKALMECALEVKKESTLKSVLSALWNLSAHC-TENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIA 250 (354)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHHHHHHTTC-HHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHccC-hhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhcc
Confidence 5667766543247777766777776654422 11111232 579999999999865432 689999999999998
Q ss_pred cCchhHHHHh--ccHHHHHHHhhcCCChhHHHHHHHHHHHhhhhch
Q psy1198 199 ALPRSSAVVL--DAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRHS 242 (249)
Q Consensus 199 gtp~qT~~VV--GAVPiL~~kLLsi~yiDVAEQALwALenISgD~p 242 (249)
+.+++...|+ |+||.|++ |+.....++.|+|+|+|.||+...+
T Consensus 251 ~~~~~~~~i~~~g~i~~Lv~-lL~~~~~~v~~~A~~aL~nLa~~~~ 295 (354)
T 3nmw_A 251 TNEDHRQILRENNCLQTLLQ-HLKSHSLTIVSNACGTLWNLSARNP 295 (354)
T ss_dssp TCHHHHHHHHTTTHHHHHHH-HTTCSCHHHHHHHHHHHHHHTSSCH
T ss_pred CCHHHHHHHHHcCCHHHHHH-HHcCCChHHHHHHHHHHHHHhCCCH
Confidence 7898888888 99999997 6777889999999999999995443
No 29
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=98.89 E-value=4.4e-09 Score=106.95 Aligned_cols=114 Identities=14% Similarity=0.152 Sum_probs=90.2
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcC-CCCCC------------------------------CCCCccChHHH
Q psy1198 124 TKAQQLLVSLQAIGDEDQQLQAVVEMCQMLVMG-NEDTL------------------------------TGFPVKQVVPA 172 (249)
Q Consensus 124 ~rl~~Ll~~L~S~~D~~~QLeAL~eLrelLSms-nep~I------------------------------~~fp~~glVP~ 172 (249)
.-++.||+-|++ +|+..|+.++.-|.++-.-. .+..+ ..+...|.||.
T Consensus 421 g~Ip~LV~LL~s-~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~ 499 (810)
T 3now_A 421 ASIHALMDLARG-GNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTA 499 (810)
T ss_dssp HHHHHHHHHHHT-TCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHH
T ss_pred chHHHHHHHhCC-CChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHH
Confidence 346778888888 59999999999998876532 11100 11223489999
Q ss_pred HHHhcCCCCCccHHHHHHHHHHHHHhcCchhHHHHh--ccHHHHHHHhhcCCChhHHHHHHHHHHHhhhhc
Q psy1198 173 LITLLSMDHNFDMMNNACRALTYMMEALPRSSAVVL--DAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRH 241 (249)
Q Consensus 173 LV~iLs~e~n~dLQ~eAArALTNIasgtp~qT~~VV--GAVPiL~~kLLsi~yiDVAEQALwALenISgD~ 241 (249)
||++|+. .++++|.+|+|+|.||+ +.+++...|+ |+||.|++ |+...+.++.|+|.|||.||+...
T Consensus 500 LV~LL~s-~s~~vqe~Aa~aL~NLA-~d~~~r~~Vv~~Gaip~Lv~-LL~s~~~~~k~~Aa~AL~nL~~~~ 567 (810)
T 3now_A 500 LCALAKT-ESHNSQELIARVLNAVC-GLKELRGKVVQEGGVKALLR-MALEGTEKGKRHATQALARIGITI 567 (810)
T ss_dssp HHHHHTC-CCHHHHHHHHHHHHHHH-TSHHHHHHHHHTTHHHHHHH-HHHSSCHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHcC-CCHHHHHHHHHHHHHHc-CCHHHHHHHHHCCCHHHHHH-HHccCCHHHHHHHHHHHHHHhcCC
Confidence 9999986 46999999999999998 5677777777 99999997 777788899999999999998753
No 30
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=98.86 E-value=2.5e-09 Score=98.86 Aligned_cols=112 Identities=16% Similarity=0.177 Sum_probs=89.6
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchhHH
Q psy1198 126 AQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEALPRSSA 205 (249)
Q Consensus 126 l~~Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~qT~ 205 (249)
++.|+..|++ .++..+..++.-|+.+.... +.....+...+++|.|+.+|+.+ ++.++.+|+|+|.||+.+.+++..
T Consensus 301 v~~Lv~lL~~-~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~l~~L~~lL~~~-~~~vr~~A~~aL~~l~~~~~~~~~ 377 (530)
T 1wa5_B 301 PKRLVELLSH-ESTLVQTPALRAVGNIVTGN-DLQTQVVINAGVLPALRLLLSSP-KENIKKEACWTISNITAGNTEQIQ 377 (530)
T ss_dssp HHHHHHGGGC-SCHHHHHHHHHHHHHHTTSC-HHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred HHHHHHHHCC-CChhhHHHHHHHHHHHHcCC-HHHHHHHHHcchHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCCHHHHH
Confidence 4566777776 58888888888888766432 11111233458999999999865 699999999999999999999988
Q ss_pred HHh--ccHHHHHHHhhcCCChhHHHHHHHHHHHhhhhc
Q psy1198 206 VVL--DAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRH 241 (249)
Q Consensus 206 ~VV--GAVPiL~~kLLsi~yiDVAEQALwALenISgD~ 241 (249)
.++ ++||.|++ ++..+..++.+.|+|+|.||+...
T Consensus 378 ~~~~~~~l~~L~~-lL~~~~~~v~~~a~~aL~~l~~~~ 414 (530)
T 1wa5_B 378 AVIDANLIPPLVK-LLEVAEYKTKKEACWAISNASSGG 414 (530)
T ss_dssp HHHHTTCHHHHHH-HHHHSCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHCCCHHHHHH-HHhcCCHHHHHHHHHHHHHHHhcC
Confidence 888 99999997 666678999999999999998864
No 31
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=98.86 E-value=4.4e-09 Score=106.93 Aligned_cols=112 Identities=16% Similarity=0.109 Sum_probs=89.0
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCC-CCCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchhH
Q psy1198 126 AQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLT-GFPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEALPRSS 204 (249)
Q Consensus 126 l~~Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~-~fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~qT 204 (249)
++-||.-|++ +++..+..|...|.++....++..+. .....+.||.|+++|..+.+...+++|+|||+||++..++..
T Consensus 538 ip~Lv~LL~s-~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~ 616 (810)
T 3now_A 538 VKALLRMALE-GTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVR 616 (810)
T ss_dssp HHHHHHHHHS-SCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred HHHHHHHHcc-CCHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHH
Confidence 4666777888 58888889999999887654332221 111246899999999865455567999999999999988888
Q ss_pred HHHh--ccHHHHHHHhhcCCChhHHHHHHHHHHHhhh
Q psy1198 205 AVVL--DAVPTFLEKLQVIQCMDVAEQSLTALEMLSR 239 (249)
Q Consensus 205 ~~VV--GAVPiL~~kLLsi~yiDVAEQALwALenISg 239 (249)
..|| |+||.|++ |+..+...|.+.|+|+|.||+.
T Consensus 617 ~~Ii~aG~l~~Lv~-LL~s~~~~Vq~~A~~~L~NLa~ 652 (810)
T 3now_A 617 QRIIKEQGVSKIEY-YLMEDHLYLTRAAAQCLCNLVM 652 (810)
T ss_dssp HHHHHTTHHHHHHH-HHHSCCTTHHHHHHHHHHHHTT
T ss_pred HHHHHcCCHHHHHH-HHcCCCHHHHHHHHHHHHHHhC
Confidence 8888 99999997 6667889999999999999987
No 32
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=98.83 E-value=7.8e-09 Score=102.38 Aligned_cols=113 Identities=12% Similarity=0.132 Sum_probs=93.0
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchhH
Q psy1198 125 KAQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEALPRSS 204 (249)
Q Consensus 125 rl~~Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~qT 204 (249)
-++.|+..|++.+|+..+..|+..|++ |+... ++...+...+.||.|+++|+.+ ++++|++|+|||.||+...++..
T Consensus 193 ~i~~Lv~~L~~~~d~~vr~~Aa~aL~~-Ls~~~-~~~~~i~~~g~I~~Lv~lL~~~-~~~v~~~A~~aL~nLa~~~~~~~ 269 (780)
T 2z6g_A 193 MVSAIVRTMQNTNDVETARCTSGTLHN-LSHHR-EGLLAIFKSGGIPALVNMLGSP-VDSVLFHAITTLHNLLLHQEGAK 269 (780)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHHHHHH-HHTSH-HHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHHHHSTTHH
T ss_pred hHHHHHHHHcCCCCHHHHHHHHHHHHH-HhCCc-hhHHHHHHcCCHHHHHHHHcCC-CHHHHHHHHHHHHHHhCCChhhH
Confidence 456677778764588999999999998 55543 2233455669999999999875 69999999999999999998888
Q ss_pred HHHh--ccHHHHHHHhhcCCChhHHHHHHHHHHHhhhhc
Q psy1198 205 AVVL--DAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRH 241 (249)
Q Consensus 205 ~~VV--GAVPiL~~kLLsi~yiDVAEQALwALenISgD~ 241 (249)
..|+ |+||.|++ |+..++.++.+.++.+|.+++..+
T Consensus 270 ~~v~~~g~v~~Lv~-lL~~~~~~v~~~a~~aL~~La~~~ 307 (780)
T 2z6g_A 270 MAVRLAGGLQKMVA-LLNKTNVKFLAITTDCLQILAYGN 307 (780)
T ss_dssp HHHHHTTHHHHHHH-GGGCCCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHcCCHHHHHH-HHhcCCHHHHHHHHHHHHHHhcCC
Confidence 8887 99999997 777788999999999999998644
No 33
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=98.80 E-value=1.3e-08 Score=97.17 Aligned_cols=114 Identities=13% Similarity=0.128 Sum_probs=91.0
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchh
Q psy1198 124 TKAQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEALPRS 203 (249)
Q Consensus 124 ~rl~~Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~q 203 (249)
.-++.|+..|++.+|+..+..++..|++ |+...+ +...+...+.||.|+++|+.+ ++++|+.|+|+|.||+...++.
T Consensus 56 ~~i~~Lv~~L~~~~~~~~~~~A~~~L~~-Ls~~~~-~~~~i~~~g~i~~Lv~lL~~~-~~~v~~~A~~aL~nL~~~~~~~ 132 (644)
T 2z6h_A 56 QMVSAIVRTMQNTNDVETARCTAGTLHN-LSHHRE-GLLAIFKSGGIPALVKMLGSP-VDSVLFYAITTLHNLLLHQEGA 132 (644)
T ss_dssp HHHHHHHHHHHSCCCHHHHHHHHHHHHH-HTTSHH-HHHHHHTTTHHHHHHHHTTCS-SHHHHHHHHHHHHHHHHHSTTH
T ss_pred ChHHHHHHHHhcCCCHHHHHHHHHHHHH-HhcChh-hHHHHHHcCCHHHHHHHHhCC-CHHHHHHHHHHHHHHHhCcchh
Confidence 3467888888874588999999999985 555432 333455569999999999875 5999999999999999998878
Q ss_pred HHHHh--ccHHHHHHHhhcCCChhHHHHHHHHHHHhhhhc
Q psy1198 204 SAVVL--DAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRH 241 (249)
Q Consensus 204 T~~VV--GAVPiL~~kLLsi~yiDVAEQALwALenISgD~ 241 (249)
...++ |+||.|++ ++..++.++...++.+|.||+...
T Consensus 133 ~~~v~~~g~i~~Lv~-lL~~~~~~~~~~a~~~L~~La~~~ 171 (644)
T 2z6h_A 133 KMAVRLAGGLQKMVA-LLNKTNVKFLAITTDCLQILAYGN 171 (644)
T ss_dssp HHHHHHTTHHHHHHH-GGGCCCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHCCChHHHHH-HHCcCCHHHHHHHHHHHHHHHhcC
Confidence 77777 99999997 667677777777777999999643
No 34
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=98.63 E-value=1.7e-07 Score=84.64 Aligned_cols=112 Identities=14% Similarity=0.197 Sum_probs=85.7
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchhHH
Q psy1198 126 AQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEALPRSSA 205 (249)
Q Consensus 126 l~~Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~qT~ 205 (249)
++.++.-+++ +++..+..++.-|+.+-... +... ...+++|.|+++|.. ++++++..|||+|.||+...++...
T Consensus 229 ~~~L~~ll~~-~~~~~~~~a~~~L~~l~~~~--~~~~--~~~~~i~~L~~ll~~-~~~~v~~~a~~~L~~L~~~~~~~~~ 302 (529)
T 1jdh_A 229 MQALGLHLTD-PSQRLVQNCLWTLRNLSDAA--TKQE--GMEGLLGTLVQLLGS-DDINVVTCAAGILSNLTCNNYKNKM 302 (529)
T ss_dssp HHHHHTTTTS-SCHHHHHHHHHHHHHHHTTC--TTCS--CCHHHHHHHHHHTTC-SCHHHHHHHHHHHHHHTTTCHHHHH
T ss_pred HHHHHHHHhC-CChHHHHHHHHHHHHHhcCC--hhhH--HHHhHHHHHHHHHcC-CCHHHHHHHHHHHHHHhcCCHHHHH
Confidence 4555655666 47777777777777654332 2221 235899999999965 5799999999999999998888888
Q ss_pred HHh--ccHHHHHHHhhc-CCChhHHHHHHHHHHHhhhhchh
Q psy1198 206 VVL--DAVPTFLEKLQV-IQCMDVAEQSLTALEMLSRRHSK 243 (249)
Q Consensus 206 ~VV--GAVPiL~~kLLs-i~yiDVAEQALwALenISgD~p~ 243 (249)
.++ ++||.|++.|.+ .+..++.+.++++|.||+.++|.
T Consensus 303 ~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~ 343 (529)
T 1jdh_A 303 MVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQE 343 (529)
T ss_dssp HHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTT
T ss_pred HHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCCch
Confidence 887 999999985554 34489999999999999987654
No 35
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=98.53 E-value=2.3e-07 Score=88.51 Aligned_cols=112 Identities=13% Similarity=0.167 Sum_probs=91.9
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchhH
Q psy1198 125 KAQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEALPRSS 204 (249)
Q Consensus 125 rl~~Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~qT 204 (249)
-++.|+.-|++ +|+..|..++.-|+++.+.. ++....+...++||.|+++|+.+ +++++..++.||+||+.+.++..
T Consensus 99 ~i~~Lv~lL~~-~~~~v~~~A~~aL~nL~~~~-~~~~~~v~~~g~i~~Lv~lL~~~-~~~~~~~a~~~L~~La~~~~~~~ 175 (644)
T 2z6h_A 99 GIPALVKMLGS-PVDSVLFYAITTLHNLLLHQ-EGAKMAVRLAGGLQKMVALLNKT-NVKFLAITTDCLQILAYGNQESK 175 (644)
T ss_dssp HHHHHHHHTTC-SSHHHHHHHHHHHHHHHHHS-TTHHHHHHHTTHHHHHHHGGGCC-CHHHHHHHHHHHHHHHTTCHHHH
T ss_pred CHHHHHHHHhC-CCHHHHHHHHHHHHHHHhCc-chhHHHHHHCCChHHHHHHHCcC-CHHHHHHHHHHHHHHHhcCcHHH
Confidence 46778888888 58999999999999988764 22222344579999999999875 57788888889999999999888
Q ss_pred HHHh--ccHHHHHHHhhcCCChhHHHHHHHHHHHhhh
Q psy1198 205 AVVL--DAVPTFLEKLQVIQCMDVAEQSLTALEMLSR 239 (249)
Q Consensus 205 ~~VV--GAVPiL~~kLLsi~yiDVAEQALwALenISg 239 (249)
..++ |+||.|++.|.+.++.++.+.++.+|.|++.
T Consensus 176 ~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~ 212 (644)
T 2z6h_A 176 LIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV 212 (644)
T ss_dssp HHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT
T ss_pred HHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhc
Confidence 8888 9999999866666678899999999999985
No 36
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=98.45 E-value=2.3e-07 Score=91.93 Aligned_cols=113 Identities=13% Similarity=0.140 Sum_probs=86.4
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCC-ccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchh
Q psy1198 125 KAQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFP-VKQVVPALITLLSMDHNFDMMNNACRALTYMMEALPRS 203 (249)
Q Consensus 125 rl~~Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp-~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~q 203 (249)
-++.|+.-|++ +|+..+..|+.-|.++-... +....+. ..++||.||++|+.+++++++..|+++|.||+.. ++.
T Consensus 151 ~ip~Lv~lL~~-~d~~vr~~A~~~L~~L~~~~--~~~~~i~~~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~-~~~ 226 (780)
T 2z6g_A 151 AIPELTKLLND-EDQVVVNKAAVMVHQLSKKE--ASRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHH-REG 226 (780)
T ss_dssp HHHHHHHHHHC-SCHHHHHHHHHHHHHHHTSH--HHHHHHTTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTS-HHH
T ss_pred CHHHHHHHHCC-CCHHHHHHHHHHHHHHhCCC--hhHHHHHhccChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCC-chh
Confidence 35667777777 58888888888887754331 1111222 2479999999998766899999999999997664 555
Q ss_pred HHHHh--ccHHHHHHHhhcCCChhHHHHHHHHHHHhhhhch
Q psy1198 204 SAVVL--DAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRHS 242 (249)
Q Consensus 204 T~~VV--GAVPiL~~kLLsi~yiDVAEQALwALenISgD~p 242 (249)
...++ |+||.|++ |+..++.+|.+.|+|+|.||+.+.+
T Consensus 227 ~~~i~~~g~I~~Lv~-lL~~~~~~v~~~A~~aL~nLa~~~~ 266 (780)
T 2z6g_A 227 LLAIFKSGGIPALVN-MLGSPVDSVLFHAITTLHNLLLHQE 266 (780)
T ss_dssp HHHHHHTTHHHHHHH-HTTCSCHHHHHHHHHHHHHHHHHST
T ss_pred HHHHHHcCCHHHHHH-HHcCCCHHHHHHHHHHHHHHhCCCh
Confidence 55555 99999997 7777889999999999999998753
No 37
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=98.13 E-value=1.1e-05 Score=82.26 Aligned_cols=117 Identities=16% Similarity=0.160 Sum_probs=81.5
Q ss_pred HHHHHHHHhcCCCH--HHHHHHHHHHHHHhhcCCCCCC--CCCCccChHHHHHHhcCC-CCC-----------ccH-HHH
Q psy1198 126 AQQLLVSLQAIGDE--DQQLQAVVEMCQMLVMGNEDTL--TGFPVKQVVPALITLLSM-DHN-----------FDM-MNN 188 (249)
Q Consensus 126 l~~Ll~~L~S~~D~--~~QLeAL~eLrelLSmsnep~I--~~fp~~glVP~LV~iLs~-e~n-----------~dL-Q~e 188 (249)
++.||.-|.+..+. ..+..|.+.|.+++... +|.+ ......+.||.|+++|.. +.. +.+ +|+
T Consensus 500 l~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~-np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~fe 578 (778)
T 3opb_A 500 VKIILEYLANKQDIGEPIRILGCRALTRMLIFT-NPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYE 578 (778)
T ss_dssp HHHHHHHTTCC---CCHHHHHHHHHHHHHHHTS-CHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHH
T ss_pred HHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcC-CHHHHcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHH
Confidence 56677777763222 15678999999988543 3322 122234899999999983 111 124 899
Q ss_pred HHHHHHHHHhcCc---hh-HHHHh---ccHHHHHHHhhcCCChhHHHHHHHHHHHhhhhchhHH
Q psy1198 189 ACRALTYMMEALP---RS-SAVVL---DAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRHSKAI 245 (249)
Q Consensus 189 AArALTNIasgtp---~q-T~~VV---GAVPiL~~kLLsi~yiDVAEQALwALenISgD~p~aI 245 (249)
|++|||||++... +. -..+| |++|.|.+ |+.+++..|.+.|+|+|-|++. +|..|
T Consensus 579 AL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~-LL~s~n~~VrrAA~elI~NL~~-~~e~i 640 (778)
T 3opb_A 579 ALLALTNLASSETSDGEEVCKHIVSTKVYWSTIEN-LMLDENVPLQRSTLELISNMMS-HPLTI 640 (778)
T ss_dssp HHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHH-GGGCSSHHHHHHHHHHHHHHHT-SGGGT
T ss_pred HHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHH-HHhCCCHHHHHHHHHHHHHHhC-CcHHH
Confidence 9999999999752 22 24455 79999998 6666888999999999999997 55543
No 38
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=98.04 E-value=4.5e-05 Score=61.19 Aligned_cols=93 Identities=19% Similarity=0.121 Sum_probs=58.2
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchhHH
Q psy1198 126 AQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEALPRSSA 205 (249)
Q Consensus 126 l~~Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~qT~ 205 (249)
++.++..|++ +|+..+..++..|.++- ....+|.|+++|+. .++.++..|+|+|.++.+ +
T Consensus 78 ~~~L~~~l~d-~~~~vr~~a~~aL~~~~------------~~~~~~~L~~~l~d-~~~~vr~~a~~aL~~~~~--~---- 137 (201)
T 3ltj_A 78 VEPLIKALKD-EDGWVRQSAAVALGQIG------------DERAVEPLIKALKD-EDWFVRIAAAFALGEIGD--E---- 137 (201)
T ss_dssp HHHHHHHTTC-SSHHHHHHHHHHHHHHC------------CGGGHHHHHHHTTC-SSHHHHHHHHHHHHHHTC--G----
T ss_pred HHHHHHHHcC-CCHHHHHHHHHHHHHhC------------cHHHHHHHHHHHcC-CCHHHHHHHHHHHHHhCC--H----
Confidence 4555555555 46666666666665531 12467777777753 357777777777777643 1
Q ss_pred HHhccHHHHHHHhhcCCChhHHHHHHHHHHHhhhhch
Q psy1198 206 VVLDAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRHS 242 (249)
Q Consensus 206 ~VVGAVPiL~~kLLsi~yiDVAEQALwALenISgD~p 242 (249)
.++|.|++ ++..++.+|+.+++++|++|..+..
T Consensus 138 ---~~~~~L~~-~l~d~~~~vr~~A~~aL~~~~~~~~ 170 (201)
T 3ltj_A 138 ---RAVEPLIK-ALKDEDGWVRQSAADALGEIGGERV 170 (201)
T ss_dssp ---GGHHHHHH-HTTCSSHHHHHHHHHHHHHHCSHHH
T ss_pred ---HHHHHHHH-HHcCCCHHHHHHHHHHHHHhCchhH
Confidence 46777775 5555677788888888888754433
No 39
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=98.03 E-value=8.2e-06 Score=79.94 Aligned_cols=75 Identities=13% Similarity=0.234 Sum_probs=60.1
Q ss_pred ChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchhHHHHh--ccHHHHHHHhhcCCChhHHHHHHHHHHHhhhhchhHH
Q psy1198 168 QVVPALITLLSMDHNFDMMNNACRALTYMMEALPRSSAVVL--DAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRHSKAI 245 (249)
Q Consensus 168 glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~qT~~VV--GAVPiL~~kLLsi~yiDVAEQALwALenISgD~p~aI 245 (249)
.++| +++.|+.. +++.+..|||||+||++ .|+.-..++ +.|+.++.+|+.-++.+|+++|.|||.||+.+.+.++
T Consensus 35 ~i~P-ll~~L~S~-~~~~r~~A~~al~~l~~-~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~ 111 (684)
T 4gmo_A 35 KILP-VLKDLKSP-DAKSRTTAAGAIANIVQ-DAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADF 111 (684)
T ss_dssp TTHH-HHHHHSSS-CCSHHHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHH
T ss_pred hHHH-HHHHcCCC-CHHHHHHHHHHHHHHHc-CcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchH
Confidence 4566 44668764 69999999999999998 454545555 8888887788888899999999999999999875443
No 40
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=97.98 E-value=6e-05 Score=60.88 Aligned_cols=100 Identities=17% Similarity=0.075 Sum_probs=55.5
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchh
Q psy1198 124 TKAQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEALPRS 203 (249)
Q Consensus 124 ~rl~~Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~q 203 (249)
..++.++..|++ +|+..+..++..|.++-. ...+|.|+++|++ .++.++..|+|+|.++.+ ++.
T Consensus 19 ~~~~~L~~~L~~-~~~~vR~~A~~~L~~~~~------------~~~~~~L~~~l~~-~~~~vr~~a~~aL~~~~~--~~~ 82 (211)
T 3ltm_A 19 EKVEMYIKNLQD-DSYYVRRAAAYALGKIGD------------ERAVEPLIKALKD-EDAWVRRAAADALGQIGD--ERA 82 (211)
T ss_dssp GGHHHHHHHTTC-SSHHHHHHHHHHHHHHCC------------GGGHHHHHHHTTC-SCHHHHHHHHHHHHHHCC--GGG
T ss_pred hHHHHHHHHHcC-CCHHHHHHHHHHHHHhCC------------ccHHHHHHHHHcC-CCHHHHHHHHHHHHhhCC--HHH
Confidence 446666666665 467777666666665321 2345555555543 245555555555555432 100
Q ss_pred HH---------------HH---------hccHHHHHHHhhcCCChhHHHHHHHHHHHhhhh
Q psy1198 204 SA---------------VV---------LDAVPTFLEKLQVIQCMDVAEQSLTALEMLSRR 240 (249)
Q Consensus 204 T~---------------~V---------VGAVPiL~~kLLsi~yiDVAEQALwALenISgD 240 (249)
.. .. -.++|.|++ +++.++.+|+..++++|++|...
T Consensus 83 ~~~L~~~l~~~~~~vr~~a~~aL~~~~~~~~~~~L~~-~l~d~~~~vr~~a~~aL~~~~~~ 142 (211)
T 3ltm_A 83 VEPLIKALKDEDGWVRQSAAVALGQIGDERAVEPLIK-ALKDEDWFVRIAAAFALGEIGDE 142 (211)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHHHHHH-HTTCSSHHHHHHHHHHHHHHCCG
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhCcHHHHHHHHH-HHhCCCHHHHHHHHHHHHHcCCH
Confidence 00 00 036777775 55667777777777777777543
No 41
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=97.97 E-value=8.1e-05 Score=59.67 Aligned_cols=63 Identities=19% Similarity=0.072 Sum_probs=39.0
Q ss_pred ChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchhHHHHhccHHHHHHHhhcCCChhHHHHHHHHHHHhhhhc
Q psy1198 168 QVVPALITLLSMDHNFDMMNNACRALTYMMEALPRSSAVVLDAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRH 241 (249)
Q Consensus 168 glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~qT~~VVGAVPiL~~kLLsi~yiDVAEQALwALenISgD~ 241 (249)
..+|.|+++|+. .++.++..|+|+|.++.+ + .++|.|++ ++..++.+|+..++|+|++|....
T Consensus 76 ~~~~~L~~~l~d-~~~~vr~~a~~aL~~~~~--~-------~~~~~L~~-~l~d~~~~vr~~a~~aL~~~~~~~ 138 (201)
T 3ltj_A 76 RAVEPLIKALKD-EDGWVRQSAAVALGQIGD--E-------RAVEPLIK-ALKDEDWFVRIAAAFALGEIGDER 138 (201)
T ss_dssp GGHHHHHHHTTC-SSHHHHHHHHHHHHHHCC--G-------GGHHHHHH-HTTCSSHHHHHHHHHHHHHHTCGG
T ss_pred HHHHHHHHHHcC-CCHHHHHHHHHHHHHhCc--H-------HHHHHHHH-HHcCCCHHHHHHHHHHHHHhCCHH
Confidence 345555555543 345566666666655532 1 46777775 556677778888888888876443
No 42
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=97.95 E-value=7.8e-05 Score=60.23 Aligned_cols=67 Identities=19% Similarity=0.112 Sum_probs=45.2
Q ss_pred ChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchhHHHHhccHHHHHHHhhcCCChhHHHHHHHHHHHhhhhchhHH
Q psy1198 168 QVVPALITLLSMDHNFDMMNNACRALTYMMEALPRSSAVVLDAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRHSKAI 245 (249)
Q Consensus 168 glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~qT~~VVGAVPiL~~kLLsi~yiDVAEQALwALenISgD~p~aI 245 (249)
..+|.|+++|++ .+++++..|+++|.++.+ + .++|.|++ +++.++..|+..++++|++|..+.....
T Consensus 112 ~~~~~L~~~l~d-~~~~vr~~a~~aL~~~~~--~-------~~~~~L~~-~l~d~~~~vr~~a~~aL~~~~~~~~~~~ 178 (211)
T 3ltm_A 112 RAVEPLIKALKD-EDWFVRIAAAFALGEIGD--E-------RAVEPLIK-ALKDEDGWVRQSAADALGEIGGERVRAA 178 (211)
T ss_dssp GGHHHHHHHTTC-SSHHHHHHHHHHHHHHCC--G-------GGHHHHHH-HTTCSSHHHHHHHHHHHHHHCSHHHHHH
T ss_pred HHHHHHHHHHhC-CCHHHHHHHHHHHHHcCC--H-------HHHHHHHH-HHcCCCHHHHHHHHHHHHHhCchhHHHH
Confidence 466777777643 456777777777777632 1 46788886 5666778888888888888865443333
No 43
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=97.89 E-value=1.9e-05 Score=60.64 Aligned_cols=88 Identities=20% Similarity=0.099 Sum_probs=71.1
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchhHH
Q psy1198 126 AQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEALPRSSA 205 (249)
Q Consensus 126 l~~Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~qT~ 205 (249)
++.|++.|++ +|+..+..++..|.++= ....+|.|+++|+ +.++.+...|+|+|.+|.+ +
T Consensus 44 ~~~L~~~L~d-~~~~vR~~A~~aL~~~~------------~~~a~~~L~~~L~-d~~~~VR~~A~~aL~~~~~--~---- 103 (131)
T 1te4_A 44 FEPLLESLSN-EDWRIRGAAAWIIGNFQ------------DERAVEPLIKLLE-DDSGFVRSGAARSLEQIGG--E---- 103 (131)
T ss_dssp HHHHHHGGGC-SCHHHHHHHHHHHGGGC------------SHHHHHHHHHHHH-HCCTHHHHHHHHHHHHHCS--H----
T ss_pred HHHHHHHHcC-CCHHHHHHHHHHHHhcC------------CHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhCc--H----
Confidence 6788888887 68988888887775531 1357999999996 4579999999999999863 1
Q ss_pred HHhccHHHHHHHhhcCCChhHHHHHHHHHHHh
Q psy1198 206 VVLDAVPTFLEKLQVIQCMDVAEQSLTALEML 237 (249)
Q Consensus 206 ~VVGAVPiL~~kLLsi~yiDVAEQALwALenI 237 (249)
.++|.|++ +++.++.+|++.|+++|++|
T Consensus 104 ---~a~~~L~~-~l~d~~~~vr~~A~~aL~~i 131 (131)
T 1te4_A 104 ---RVRAAMEK-LAETGTGFARKVAVNYLETH 131 (131)
T ss_dssp ---HHHHHHHH-HTTSCCTHHHHHHHHHGGGC
T ss_pred ---HHHHHHHH-HHhCCCHHHHHHHHHHHHhC
Confidence 57899997 55668889999999999986
No 44
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=97.86 E-value=6e-05 Score=66.18 Aligned_cols=117 Identities=12% Similarity=0.021 Sum_probs=82.8
Q ss_pred HHHHHHHHHhcCC--CHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCCCC-CccHHHHHHHHHHHHHhcCc
Q psy1198 125 KAQQLLVSLQAIG--DEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDH-NFDMMNNACRALTYMMEALP 201 (249)
Q Consensus 125 rl~~Ll~~L~S~~--D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~e~-n~dLQ~eAArALTNIasgtp 201 (249)
-++.|++.+++ + |+..+..++.-|.++......+.+..+ ...++|.|+++|+.++ +++++..|++||.++++...
T Consensus 129 ll~~L~~~l~~-~~~~~~~r~~al~~l~~l~~~~~~~~~~~~-~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~ 206 (462)
T 1ibr_B 129 LIPQLVANVTN-PNSTEHMKESTLEAIGYICQDIDPEQLQDK-SNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTK 206 (462)
T ss_dssp HHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHHSCGGGTGGG-HHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTH
T ss_pred HHHHHHHHhcc-CCCCHHHHHHHHHHHHHHHHhCCchhhHhH-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 45667777777 5 777777777777766653211112222 2468999999998765 79999999999999887654
Q ss_pred hhHH--HHh-ccHHHHHHHhhcCCChhHHHHHHHHHHHhhhhchhH
Q psy1198 202 RSSA--VVL-DAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRHSKA 244 (249)
Q Consensus 202 ~qT~--~VV-GAVPiL~~kLLsi~yiDVAEQALwALenISgD~p~a 244 (249)
+... .+. -.++.|++ ++..++.+++++++++|..|....++.
T Consensus 207 ~~~~~~~~~~~l~~~l~~-~~~~~~~~vr~~~~~~l~~l~~~~~~~ 251 (462)
T 1ibr_B 207 ANFDKESERHFIMQVVCE-ATQCPDTRVRVAALQNLVKIMSLYYQY 251 (462)
T ss_dssp HHHTSHHHHHHHHHHHHH-HTTCSSHHHHHHHHHHHHHHHHHCGGG
T ss_pred HhhhhhHHHHHHHHHHHH-hcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 3321 112 24777775 667788999999999999999888764
No 45
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=97.81 E-value=4.9e-05 Score=74.22 Aligned_cols=116 Identities=13% Similarity=0.141 Sum_probs=84.8
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCC----CCCCCCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCc
Q psy1198 126 AQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNED----TLTGFPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEALP 201 (249)
Q Consensus 126 l~~Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep----~I~~fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp 201 (249)
++.+++.+++ +|+..+..++.-|.++.....+. .+ .-+...++|.|+++|+. .+++++..|++||.++++..+
T Consensus 130 l~~L~~~l~~-~~~~~r~~al~~L~~i~~~~~~~~~~~~~-~~~~~~il~~l~~~l~~-~~~~vR~~A~~aL~~~~~~~~ 206 (852)
T 4fdd_A 130 LPKLCSLLDS-EDYNTCEGAFGALQKICEDSAEILDSDVL-DRPLNIMIPKFLQFFKH-SSPKIRSHAVACVNQFIISRT 206 (852)
T ss_dssp HHHHHHHHSC-SSHHHHHHHHHHHHHHHHHHTTHHHHCSS-SSCHHHHHHHHTTTTTC-SSHHHHHHHHHHHHTTTTTTC
T ss_pred HHHHHHHHcC-CCHHHHHHHHHHHHHHHHHhHHHhchhhh-cchHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHhccc
Confidence 4566667777 47776666666665555332110 11 12245789999999984 579999999999999998877
Q ss_pred hhHHHHh-ccHHHHHHHhhcCCChhHHHHHHHHHHHhhhhchhHH
Q psy1198 202 RSSAVVL-DAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRHSKAI 245 (249)
Q Consensus 202 ~qT~~VV-GAVPiL~~kLLsi~yiDVAEQALwALenISgD~p~aI 245 (249)
......+ ..+|.|++ ++..+..+|+++++|+|.+|+...|+.+
T Consensus 207 ~~~~~~~~~~l~~l~~-~~~d~~~~vr~~a~~~L~~l~~~~~~~~ 250 (852)
T 4fdd_A 207 QALMLHIDSFIENLFA-LAGDEEPEVRKNVCRALVMLLEVRMDRL 250 (852)
T ss_dssp HHHHTSHHHHHHHHHH-HHTCCCHHHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHHHHHHHHHHH-HcCCCCHHHHHHHHHHHHHHHHhCHHHH
Confidence 6544444 88899996 6666889999999999999999888653
No 46
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=97.62 E-value=0.00035 Score=58.27 Aligned_cols=110 Identities=16% Similarity=0.199 Sum_probs=86.1
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchhHHHH
Q psy1198 128 QLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEALPRSSAVV 207 (249)
Q Consensus 128 ~Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~qT~~V 207 (249)
.+.+.+.+ .|.....+++..|.+++.-. +.+..-....+++.|.+.|.++.|+.++..|+.||..|+..........
T Consensus 19 ~l~~~l~s-~~w~~R~~a~~~L~~l~~~~--~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~ 95 (242)
T 2qk2_A 19 DFYDKLEE-KKWTLRKESLEVLEKLLTDH--PKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNY 95 (242)
T ss_dssp THHHHHTC-SSHHHHHHHHHHHHHHHHHC--SSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHH
T ss_pred HHHhhhcc-CCHHHHHHHHHHHHHHHccC--CCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 36667777 48999999999999998762 2222112357899999999645789999999999999999877665555
Q ss_pred h-ccHHHHHHHhhcCCChhHHHHHHHHHHHhhhhc
Q psy1198 208 L-DAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRH 241 (249)
Q Consensus 208 V-GAVPiL~~kLLsi~yiDVAEQALwALenISgD~ 241 (249)
+ -.+|.|+++|-+ +...|++.+..+|..|....
T Consensus 96 ~~~ilp~ll~~l~d-~~~~vr~~a~~aL~~~~~~~ 129 (242)
T 2qk2_A 96 ASACVPSLLEKFKE-KKPNVVTALREAIDAIYAST 129 (242)
T ss_dssp HHHHHHHHHHGGGC-CCHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHcC
Confidence 5 889999986655 67889999999999987643
No 47
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=97.58 E-value=0.00043 Score=58.20 Aligned_cols=90 Identities=19% Similarity=0.157 Sum_probs=51.6
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchhHHH
Q psy1198 127 QQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEALPRSSAV 206 (249)
Q Consensus 127 ~~Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~qT~~ 206 (249)
+.++..|++ +|+..+..++..|.++ .....+|.|+++|+. +++++...|+|+|.+|....+
T Consensus 131 ~~L~~~l~d-~~~~vR~~a~~aL~~~------------~~~~~~~~L~~~l~d-~~~~vr~~a~~aL~~~~~~~~----- 191 (280)
T 1oyz_A 131 EQSQITAFD-KSTNVRRATAFAISVI------------NDKATIPLLINLLKD-PNGDVRNWAAFAININKYDNS----- 191 (280)
T ss_dssp HHHHHHTTC-SCHHHHHHHHHHHHTC---------------CCHHHHHHHHTC-SSHHHHHHHHHHHHHHTCCCH-----
T ss_pred HHHHHHhhC-CCHHHHHHHHHHHHhc------------CCHHHHHHHHHHHcC-CCHHHHHHHHHHHHhhccCcH-----
Confidence 333444454 4566665555555432 112467788887764 457778888888877632111
Q ss_pred HhccHHHHHHHhhcCCChhHHHHHHHHHHHhh
Q psy1198 207 VLDAVPTFLEKLQVIQCMDVAEQSLTALEMLS 238 (249)
Q Consensus 207 VVGAVPiL~~kLLsi~yiDVAEQALwALenIS 238 (249)
.++|.|++ ++..++.+|+..++|+|++|.
T Consensus 192 --~~~~~L~~-~l~d~~~~vR~~A~~aL~~~~ 220 (280)
T 1oyz_A 192 --DIRDCFVE-MLQDKNEEVRIEAIIGLSYRK 220 (280)
T ss_dssp --HHHHHHHH-HTTCSCHHHHHHHHHHHHHTT
T ss_pred --HHHHHHHH-HhcCCCHHHHHHHHHHHHHhC
Confidence 34566664 444456666677777776665
No 48
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=97.57 E-value=0.00014 Score=69.40 Aligned_cols=74 Identities=14% Similarity=0.107 Sum_probs=62.0
Q ss_pred cChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchhHHHHhccHHHHHHHhhcCCChhHHHHHHHHHHHhhhhchh
Q psy1198 167 KQVVPALITLLSMDHNFDMMNNACRALTYMMEALPRSSAVVLDAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRHSK 243 (249)
Q Consensus 167 ~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~qT~~VVGAVPiL~~kLLsi~yiDVAEQALwALenISgD~p~ 243 (249)
..++|.+.++|. +.+|.+...||+||++|+...|+.... -+.+|.|.+ |++.++..|...|+++|.+|..+.|.
T Consensus 120 ~~l~~~l~~~L~-d~~~~VRk~A~~al~~i~~~~p~~~~~-~~~~~~l~~-lL~d~d~~V~~~A~~aL~~i~~~~~~ 193 (591)
T 2vgl_B 120 EYLCEPLRKCLK-DEDPYVRKTAAVCVAKLHDINAQMVED-QGFLDSLRD-LIADSNPMVVANAVAALSEISESHPN 193 (591)
T ss_dssp HHHHHHHHHHSS-CSCHHHHHHHHHHHHHHHHSSCCCHHH-HHHHHHHHH-TTSCSCHHHHHHHHHHHHHHTTSCCS
T ss_pred HHHHHHHHHHcC-CCChHHHHHHHHHHHHHHhhChhhccc-ccHHHHHHH-HhCCCChhHHHHHHHHHHHHHhhCCC
Confidence 457888999997 457999999999999999988874321 167899997 66778899999999999999998773
No 49
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=97.53 E-value=7.1e-05 Score=73.10 Aligned_cols=112 Identities=13% Similarity=0.110 Sum_probs=82.5
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchhH-HH
Q psy1198 128 QLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEALPRSS-AV 206 (249)
Q Consensus 128 ~Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~qT-~~ 206 (249)
.+.+.+++ .++.....|+..|..+.....+ .+.. ....++|.|+.+|+. .++.+...|||||.++++..+.+. ..
T Consensus 363 ~l~~~l~~-~~~~~R~aa~~alg~i~~~~~~-~~~~-~l~~~l~~l~~~l~d-~~~~Vr~~a~~~l~~l~~~~~~~~~~~ 438 (852)
T 4fdd_A 363 LLKELLFH-HEWVVKESGILVLGAIAEGCMQ-GMIP-YLPELIPHLIQCLSD-KKALVRSITCWTLSRYAHWVVSQPPDT 438 (852)
T ss_dssp HHHHHHTC-SSHHHHHHHHHHHHHTTTTTHH-HHGG-GHHHHHHHHHHHTTC-SSHHHHHHHHHHHHHTHHHHHHSCTTT
T ss_pred HHHHHhcC-CCHHHHHHHHHHHHHHHhcchH-HHHH-HHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHHHHHhccchHHH
Confidence 33445666 4888888888888887654321 1111 135789999999964 579999999999999999776543 22
Q ss_pred Hh-ccHHHHHHHhhcCCChhHHHHHHHHHHHhhhhchhH
Q psy1198 207 VL-DAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRHSKA 244 (249)
Q Consensus 207 VV-GAVPiL~~kLLsi~yiDVAEQALwALenISgD~p~a 244 (249)
.. ..+|.|++.| ..+..+|++.|+|+|.+|....+..
T Consensus 439 ~~~~ll~~L~~~L-~d~~~~vr~~a~~aL~~l~~~~~~~ 476 (852)
T 4fdd_A 439 YLKPLMTELLKRI-LDSNKRVQEAACSAFATLEEEACTE 476 (852)
T ss_dssp THHHHHHHHHHHH-TCSSHHHHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHHHHHhhHh
Confidence 23 8899999754 4467899999999999999776654
No 50
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=97.52 E-value=0.00031 Score=71.64 Aligned_cols=110 Identities=10% Similarity=0.113 Sum_probs=85.6
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCC-CCCCccC------hHHHHHHhcCCCCCccHHHHHHHHHHHHHh
Q psy1198 126 AQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTL-TGFPVKQ------VVPALITLLSMDHNFDMMNNACRALTYMME 198 (249)
Q Consensus 126 l~~Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I-~~fp~~g------lVP~LV~iLs~e~n~dLQ~eAArALTNIas 198 (249)
++.|++-|.+ +++..|-+|+.-+|.+.. +.+.| ..|-... -++.||.+|+. +++++|..|+|+|.|+.+
T Consensus 608 ~~~L~~LL~s-~n~~VrrAA~elI~NL~~--~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s-~D~~~r~AAagALAnLts 683 (778)
T 3opb_A 608 WSTIENLMLD-ENVPLQRSTLELISNMMS--HPLTIAAKFFNLENPQSLRNFNILVKLLQL-SDVESQRAVAAIFANIAT 683 (778)
T ss_dssp HHHHHHGGGC-SSHHHHHHHHHHHHHHHT--SGGGTGGGTSCCSSHHHHHHHHHHHHGGGC-SCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-CCHHHHHHHHHHHHHHhC--CcHHHHHHHHhhcCchhhccHHHHHHHHcC-CCHHHHHHHHHHHHHhcC
Confidence 3444555566 578888899999999885 23344 2332111 27889999965 579999999999999999
Q ss_pred cCchhHHHHh---ccHHHHHHHhhcC-CChhHHHHHHHHHHHhhh
Q psy1198 199 ALPRSSAVVL---DAVPTFLEKLQVI-QCMDVAEQSLTALEMLSR 239 (249)
Q Consensus 199 gtp~qT~~VV---GAVPiL~~kLLsi-~yiDVAEQALwALenISg 239 (249)
..|.-+..++ +.|+.|++.|.+. +..+|..-++-+|-||+.
T Consensus 684 ~~~~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~ 728 (778)
T 3opb_A 684 TIPLIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFE 728 (778)
T ss_dssp HCHHHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHT
T ss_pred CChHHHHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 9998888888 7899999855553 899999999999999997
No 51
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=97.52 E-value=0.00042 Score=58.31 Aligned_cols=108 Identities=11% Similarity=0.034 Sum_probs=61.6
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchhH
Q psy1198 125 KAQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEALPRSS 204 (249)
Q Consensus 125 rl~~Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~qT 204 (249)
-++.++..|++ +|+..+..++..|.++-.. ... ...+++.|.+.+..+.++.++..|+|+|.++....|...
T Consensus 55 ~~~~L~~~l~d-~~~~vR~~A~~aL~~l~~~--~~~-----~~~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~~~ 126 (280)
T 1oyz_A 55 AVRLAIEFCSD-KNYIRRDIGAFILGQIKIC--KKC-----EDNVFNILNNMALNDKSACVRATAIESTAQRCKKNPIYS 126 (280)
T ss_dssp HHHHHHHHHTC-SSHHHHHHHHHHHHHSCCC--TTT-----HHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGGH
T ss_pred HHHHHHHHHcC-CCHHHHHHHHHHHHHhccc--ccc-----chHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCccc
Confidence 45666666776 4777777777666553210 000 112344444322334567778888888887764322111
Q ss_pred H--------------------H---Hh-----ccHHHHHHHhhcCCChhHHHHHHHHHHHhhhhc
Q psy1198 205 A--------------------V---VL-----DAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRH 241 (249)
Q Consensus 205 ~--------------------~---VV-----GAVPiL~~kLLsi~yiDVAEQALwALenISgD~ 241 (249)
. + +. .++|.|++ ++..++.+|+..++|+|++|..+.
T Consensus 127 ~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~~~~~~~L~~-~l~d~~~~vr~~a~~aL~~~~~~~ 190 (280)
T 1oyz_A 127 PKIVEQSQITAFDKSTNVRRATAFAISVINDKATIPLLIN-LLKDPNGDVRNWAAFAININKYDN 190 (280)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHTC---CCHHHHHH-HHTCSSHHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHhhCCCHHHHHHHHHHHHhcCCHHHHHHHHH-HHcCCCHHHHHHHHHHHHhhccCc
Confidence 0 0 00 37788886 556677788888888888875333
No 52
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=97.45 E-value=9.9e-05 Score=72.30 Aligned_cols=119 Identities=14% Similarity=0.168 Sum_probs=84.9
Q ss_pred hhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHH-HhcCCCCCccHHHHHHHHHHHHHhc
Q psy1198 121 DTATKAQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALI-TLLSMDHNFDMMNNACRALTYMMEA 199 (249)
Q Consensus 121 ~~~~rl~~Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV-~iLs~e~n~dLQ~eAArALTNIasg 199 (249)
....++..+|+.|+| .|+..+..|+..|+++... ..+...+...++|+.++ .+|. +.+.+++.+|+|||-||+.-
T Consensus 31 ~~~~~i~Pll~~L~S-~~~~~r~~A~~al~~l~~~--~~~~~l~~~~~~v~~ll~~lL~-D~~~~Vr~~A~gaLrnL~~~ 106 (684)
T 4gmo_A 31 LREDKILPVLKDLKS-PDAKSRTTAAGAIANIVQD--AKCRKLLLREQVVHIVLTETLT-DNNIDSRAAGWEILKVLAQE 106 (684)
T ss_dssp HHHHTTHHHHHHHSS-SCCSHHHHHHHHHHHHTTS--HHHHHHHHHTTHHHHHHHTTTT-CSCHHHHHHHHHHHHHHHHH
T ss_pred cchhhHHHHHHHcCC-CCHHHHHHHHHHHHHHHcC--cHHHHHHHHcCCHHHHHHHHcC-CCCHHHHHHHHHHHHHHHhh
Confidence 344567788999999 5898898899999988632 22222355567777665 4565 56799999999999999854
Q ss_pred -CchhHHHHh--ccHHHHHHHhhcCC--------------------ChhHHHHHHHHHHHhhhhchh
Q psy1198 200 -LPRSSAVVL--DAVPTFLEKLQVIQ--------------------CMDVAEQSLTALEMLSRRHSK 243 (249)
Q Consensus 200 -tp~qT~~VV--GAVPiL~~kLLsi~--------------------yiDVAEQALwALenISgD~p~ 243 (249)
-++....++ +++|.|+..|.++. ..|++|+++++|-+++--+.+
T Consensus 107 ~g~d~~~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~ 173 (684)
T 4gmo_A 107 EEADFCVHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDE 173 (684)
T ss_dssp SCHHHHHHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred cCchHHHHHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHH
Confidence 355555566 99999987443211 147899999999988854443
No 53
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=97.36 E-value=0.00025 Score=54.37 Aligned_cols=61 Identities=16% Similarity=0.178 Sum_probs=51.1
Q ss_pred HHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchhHHHHhccHHHHHHHhhcCCChhHHHHHHHHHHHhhhhc
Q psy1198 170 VPALITLLSMDHNFDMMNNACRALTYMMEALPRSSAVVLDAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRH 241 (249)
Q Consensus 170 VP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~qT~~VVGAVPiL~~kLLsi~yiDVAEQALwALenISgD~ 241 (249)
+|.|+++|++ .++.++..|+|+|.+|.+ + .++|.|++ ++..++.+|+..++|+|++|....
T Consensus 44 ~~~L~~~L~d-~~~~vR~~A~~aL~~~~~--~-------~a~~~L~~-~L~d~~~~VR~~A~~aL~~~~~~~ 104 (131)
T 1te4_A 44 FEPLLESLSN-EDWRIRGAAAWIIGNFQD--E-------RAVEPLIK-LLEDDSGFVRSGAARSLEQIGGER 104 (131)
T ss_dssp HHHHHHGGGC-SCHHHHHHHHHHHGGGCS--H-------HHHHHHHH-HHHHCCTHHHHHHHHHHHHHCSHH
T ss_pred HHHHHHHHcC-CCHHHHHHHHHHHHhcCC--H-------HHHHHHHH-HHcCCCHHHHHHHHHHHHHhCcHH
Confidence 6999999984 679999999999999864 1 46899997 556688999999999999997543
No 54
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=97.31 E-value=0.0026 Score=53.00 Aligned_cols=110 Identities=11% Similarity=0.077 Sum_probs=79.5
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcC-chh-H
Q psy1198 127 QQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEAL-PRS-S 204 (249)
Q Consensus 127 ~~Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgt-p~q-T 204 (249)
+.|++.+.+ .++..+-.+...|..+... ++...++|.|...|++ .++.++.+++.+|..+++-. |++ .
T Consensus 101 p~ll~~l~d-~~~~vr~~a~~aL~~~~~~--------~~~~~ll~~l~~~l~~-~~~~vr~~~l~~l~~~l~~~~~~~~~ 170 (242)
T 2qk2_A 101 PSLLEKFKE-KKPNVVTALREAIDAIYAS--------TSLEAQQESIVESLSN-KNPSVKSETALFIARALTRTQPTALN 170 (242)
T ss_dssp HHHHHGGGC-CCHHHHHHHHHHHHHHHTT--------SCHHHHHHHHHHHTTC-SCHHHHHHHHHHHHHHHTTCCGGGCC
T ss_pred HHHHHHHcC-CCHHHHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHcC-CChHHHHHHHHHHHHHHHHcCCCCcc
Confidence 444555565 3555555555666665542 2346799999999985 47999999999999988776 543 2
Q ss_pred HHHh-ccHHHHHHHhhcCCChhHHHHHHHHHHHhhhhchhHHhh
Q psy1198 205 AVVL-DAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRHSKAILQ 247 (249)
Q Consensus 205 ~~VV-GAVPiL~~kLLsi~yiDVAEQALwALenISgD~p~aIL~ 247 (249)
...+ -.+|.|++ +++-++.+|++.|..+|+.|..--+.+.+.
T Consensus 171 ~~~l~~l~p~l~~-~l~D~~~~VR~~A~~~l~~l~~~vg~~~~~ 213 (242)
T 2qk2_A 171 KKLLKLLTTSLVK-TLNEPDPTVRDSSAEALGTLIKLMGDKAVT 213 (242)
T ss_dssp HHHHHHHHHHHHH-HHTSSCHHHHHHHHHHHHHHHHHHCHHHHG
T ss_pred HHHHHHHHHHHHH-HhcCCChHHHHHHHHHHHHHHHHcCHHHHH
Confidence 3333 78999996 666688999999999999998877766443
No 55
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=97.24 E-value=0.0018 Score=55.99 Aligned_cols=106 Identities=14% Similarity=0.157 Sum_probs=82.6
Q ss_pred HHhcCCCHHHHHHHHHHHHH-HhhcCCCCCCC--CCCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCc--hhH-H
Q psy1198 132 SLQAIGDEDQQLQAVVEMCQ-MLVMGNEDTLT--GFPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEALP--RSS-A 205 (249)
Q Consensus 132 ~L~S~~D~~~QLeAL~eLre-lLSmsnep~I~--~fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp--~qT-~ 205 (249)
.|.| .+.....+++.+|.. ++.- .+-|. .-+...++..|.+.|.++.|+.+...||.||..|++++. +-. .
T Consensus 24 ~l~s-~~w~eRk~al~~L~~~~~~~--~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~ 100 (249)
T 2qk1_A 24 RITS-SKWKDRVEALEEFWDSVLSQ--TKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKD 100 (249)
T ss_dssp HHTC-SSHHHHHHHHHHHHHHTGGG--CCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHH
T ss_pred Hhhc-CCHHHHHHHHHHHHHHHHhc--CCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHH
Confidence 4577 489999999999999 7743 33333 222357899999999767789999999999999999986 433 3
Q ss_pred HHhccHHHHHHHhhcCCChhHHHHHHHHHHHhhhhc
Q psy1198 206 VVLDAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRH 241 (249)
Q Consensus 206 ~VVGAVPiL~~kLLsi~yiDVAEQALwALenISgD~ 241 (249)
...-.+|.++++|-+ ....|.|.+..||..|....
T Consensus 101 y~~~llp~ll~~l~d-kk~~V~~aa~~al~~i~~~~ 135 (249)
T 2qk1_A 101 YVSLVFTPLLDRTKE-KKPSVIEAIRKALLTICKYY 135 (249)
T ss_dssp HHHHHHHHHHHGGGC-CCHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHHc
Confidence 344789999998766 45789999999999998865
No 56
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=97.21 E-value=0.0019 Score=65.63 Aligned_cols=114 Identities=18% Similarity=0.190 Sum_probs=88.7
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchh
Q psy1198 124 TKAQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEALPRS 203 (249)
Q Consensus 124 ~rl~~Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~q 203 (249)
..+..+++.+.+ .|++...+|+.+|.+.+... ...++.-....++|.|++.|. +.+++++..|+.||.++++..++.
T Consensus 6 ~~l~~lL~~l~s-~d~~~R~~A~~~L~~~l~~~-~~~~~~~~~~~il~~Ll~~L~-d~~~~vR~~A~~~L~~l~~~~~~~ 82 (1230)
T 1u6g_C 6 YHISNLLEKMTS-SDKDFRFMATNDLMTELQKD-SIKLDDDSERKVVKMILKLLE-DKNGEVQNLAVKCLGPLVSKVKEY 82 (1230)
T ss_dssp HHHHHHHHHTTC-SSHHHHHHHHHHHHHHTSSS-CCSCCTTHHHHHHHHHHHHTT-CSSHHHHHHHHHHHHHHHTTSCHH
T ss_pred hHHHHHHHhcCC-CCHhHHHHHHHHHHHHHccc-ccCCChhHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHhCCHH
Confidence 568899999998 59999999999999977542 112222234578999999997 567999999999999999988872
Q ss_pred HHHHhccHHHHHHHhhcCCChhHHHHHHHHHHHhhhhchh
Q psy1198 204 SAVVLDAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRHSK 243 (249)
Q Consensus 204 T~~VVGAVPiL~~kLLsi~yiDVAEQALwALenISgD~p~ 243 (249)
.+-..+|.|++.|. .+...+++.+..+|..|+.+.+.
T Consensus 83 --~~~~i~~~Ll~~l~-d~~~~vR~~a~~~L~~i~~~l~~ 119 (1230)
T 1u6g_C 83 --QVETIVDTLCTNML-SDKEQLRDISSIGLKTVIGELPP 119 (1230)
T ss_dssp --HHHHHHHHHHHHTT-CSSSHHHHHHHHHHHHHHHHCC-
T ss_pred --HHHHHHHHHHHHhc-CCcHHHHHHHHHHHHHHHHhCCC
Confidence 22277888887554 46678999999999999977654
No 57
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=97.12 E-value=0.00099 Score=63.60 Aligned_cols=116 Identities=12% Similarity=0.034 Sum_probs=80.8
Q ss_pred HHHHHHHHhcCC--CHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCCCC-CccHHHHHHHHHHHHHhcCch
Q psy1198 126 AQQLLVSLQAIG--DEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDH-NFDMMNNACRALTYMMEALPR 202 (249)
Q Consensus 126 l~~Ll~~L~S~~--D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~e~-n~dLQ~eAArALTNIasgtp~ 202 (249)
++.+++.+++ + |+..+..+++-|..+......+.+.. ....++|.|+++|+.++ +++++..|.+||.++++.++.
T Consensus 130 l~~l~~~l~~-~~~~~~~r~~al~~l~~l~~~~~~~~~~~-~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~ 207 (876)
T 1qgr_A 130 IPQLVANVTN-PNSTEHMKESTLEAIGYICQDIDPEQLQD-KSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKA 207 (876)
T ss_dssp HHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHHSCHHHHGG-GHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHH
T ss_pred HHHHHHHHhC-CCCCHHHHHHHHHHHHHHHHhcCHhhHHh-HHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 4556666776 5 77776667777766664321111111 13468888899998764 689999999999999987664
Q ss_pred hHHH-Hh--ccHHHHHHHhhcCCChhHHHHHHHHHHHhhhhchhH
Q psy1198 203 SSAV-VL--DAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRHSKA 244 (249)
Q Consensus 203 qT~~-VV--GAVPiL~~kLLsi~yiDVAEQALwALenISgD~p~a 244 (249)
.... .. ..++.+++ ++..+..+++++++++|..|....|+.
T Consensus 208 ~~~~~~~~~~il~~l~~-~~~~~~~~vr~~a~~~l~~l~~~~~~~ 251 (876)
T 1qgr_A 208 NFDKESERHFIMQVVCE-ATQCPDTRVRVAALQNLVKIMSLYYQY 251 (876)
T ss_dssp HHTSHHHHHHHHHHHHH-HTTCSSHHHHHHHHHHHHHHHHHSGGG
T ss_pred HHHhHHHHHHHHHHHHH-HcCCCCHHHHHHHHHHHHHHHHHhHHH
Confidence 4321 11 35777776 566678899999999999999988764
No 58
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=97.06 E-value=0.0014 Score=59.29 Aligned_cols=111 Identities=13% Similarity=0.178 Sum_probs=74.7
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchh
Q psy1198 124 TKAQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEALPRS 203 (249)
Q Consensus 124 ~rl~~Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~q 203 (249)
..+..+++.|++ +|+.....|++.|.++..... + .-....++|.|.+.+ +++++++..++.+|.++.+-....
T Consensus 10 ~~i~~l~~~l~s-~~~~~R~~A~~~l~~i~~~~~--~--~~~~~~l~~~L~~~~--d~~~~vr~~~~~~L~~~~~~~~~~ 82 (588)
T 1b3u_A 10 YPIAVLIDELRN-EDVQLRLNSIKKLSTIALALG--V--ERTRSELLPFLTDTI--YDEDEVLLALAEQLGTFTTLVGGP 82 (588)
T ss_dssp HHHHHHHHHTTC-SCHHHHHHHHHTHHHHHHHSC--H--HHHHHTHHHHHHHTC--CCCHHHHHHHHHHHTTCSGGGTSG
T ss_pred CcHHHHHHHhhc-ccHHHHHHHHHhHHHHHHHhC--H--HHHHHHHHHHHHHhc--CCcHHHHHHHHHHHHHHHhccCcH
Confidence 347788888888 588887888888877654211 0 001235777777766 456788888888888877653322
Q ss_pred HHHHh-ccHHHHHHHhhcCCChhHHHHHHHHHHHhhhhchhH
Q psy1198 204 SAVVL-DAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRHSKA 244 (249)
Q Consensus 204 T~~VV-GAVPiL~~kLLsi~yiDVAEQALwALenISgD~p~a 244 (249)
..+ ..+|.|.+ |+..++.+|++.++.+|.+|+...+..
T Consensus 83 --~~~~~ll~~L~~-l~~~~~~~vR~~a~~~L~~l~~~~~~~ 121 (588)
T 1b3u_A 83 --EYVHCLLPPLES-LATVEETVVRDKAVESLRAISHEHSPS 121 (588)
T ss_dssp --GGGGGGHHHHHH-HTTSSCHHHHHHHHHHHHHHHTTSCHH
T ss_pred --HHHHHHHHHHHH-HHhCchHHHHHHHHHHHHHHHHHCCHH
Confidence 122 56777775 666677888888888888888776654
No 59
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=97.03 E-value=0.0017 Score=56.92 Aligned_cols=77 Identities=16% Similarity=0.210 Sum_probs=62.4
Q ss_pred cChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCc-hhHHHHh-ccHHHHHHHhhcCCChhHHHHHHHHHHHhhhhchhH
Q psy1198 167 KQVVPALITLLSMDHNFDMMNNACRALTYMMEALP-RSSAVVL-DAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRHSKA 244 (249)
Q Consensus 167 ~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp-~qT~~VV-GAVPiL~~kLLsi~yiDVAEQALwALenISgD~p~a 244 (249)
..++|.+.+.|+. .+..+...|+++|.+|+++.. +.....+ ..+|.|++ ++..++..|+..|+|+|++|+...+..
T Consensus 365 ~~~~~~l~~~l~~-~~~~~r~aal~~l~~l~~~~~~~~~~~~l~~~~~~l~~-~l~d~~~~Vr~~a~~~l~~~~~~~~~~ 442 (462)
T 1ibr_B 365 PHVLPFIKEHIKN-PDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIE-LMKDPSVVVRDTAAWTVGRICELLPEA 442 (462)
T ss_dssp HHHHHHHHHHTTC-SSHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHH-GGGCSCHHHHHHHHHHHHHHHHHGGGG
T ss_pred HHHHHHHHHHhcC-CChHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHH-HhcCCCHHHHHHHHHHHHHHHHhcccc
Confidence 3577888888874 568999999999999999876 4334445 88999997 666688999999999999999887765
Q ss_pred H
Q psy1198 245 I 245 (249)
Q Consensus 245 I 245 (249)
+
T Consensus 443 ~ 443 (462)
T 1ibr_B 443 A 443 (462)
T ss_dssp C
T ss_pred c
Confidence 4
No 60
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=97.01 E-value=0.0023 Score=60.98 Aligned_cols=110 Identities=12% Similarity=0.123 Sum_probs=71.3
Q ss_pred HHHHhcCCCHHHHHH---HHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCc----h
Q psy1198 130 LVSLQAIGDEDQQLQ---AVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEALP----R 202 (249)
Q Consensus 130 l~~L~S~~D~~~QLe---AL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp----~ 202 (249)
+..+++ .++..+.. ++..+++.+...- ++ ..+ ...++|.|++.|+.+ +.++..|||+|.++++... +
T Consensus 417 ~~~l~d-~~~~vr~~a~~~l~~l~~~~~~~~-~~-~~~-~~~~l~~l~~~l~~~--~~v~~~a~~al~~l~~~~~~~~~~ 490 (861)
T 2bpt_A 417 LNLMND-QSLQVKETTAWCIGRIADSVAESI-DP-QQH-LPGVVQACLIGLQDH--PKVATNCSWTIINLVEQLAEATPS 490 (861)
T ss_dssp HHGGGC-SCHHHHHHHHHHHHHHHHHHGGGS-CT-TTT-HHHHHHHHHHHHTSC--HHHHHHHHHHHHHHHHHHSSSSSC
T ss_pred HHHcCC-CcHHHHHHHHHHHHHHHHHhhhhc-CC-HHH-HHHHHHHHHHHhccC--hHHHHHHHHHHHHHHHhcccccch
Confidence 334454 46655443 4455555543210 00 112 357899999999643 8999999999999999864 2
Q ss_pred hHHHHh-ccHHHHHHHhhcCC-ChhHHHHHHHHHHHhhhhchhHH
Q psy1198 203 SSAVVL-DAVPTFLEKLQVIQ-CMDVAEQSLTALEMLSRRHSKAI 245 (249)
Q Consensus 203 qT~~VV-GAVPiL~~kLLsi~-yiDVAEQALwALenISgD~p~aI 245 (249)
...-.+ ..+|.|++.|.+.+ ..+|.+.++++|+.|....+..+
T Consensus 491 ~l~~~~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~~ 535 (861)
T 2bpt_A 491 PIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTV 535 (861)
T ss_dssp GGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGG
T ss_pred hhHHHHHHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcchhh
Confidence 232333 67888886443322 26899999999999998777653
No 61
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=96.98 E-value=0.0075 Score=51.98 Aligned_cols=112 Identities=8% Similarity=0.113 Sum_probs=78.2
Q ss_pred HHHHHHHHhcCCCHHHH---HHHHHHHHHHhhcCCCCCCCCCC-ccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCc
Q psy1198 126 AQQLLVSLQAIGDEDQQ---LQAVVEMCQMLVMGNEDTLTGFP-VKQVVPALITLLSMDHNFDMMNNACRALTYMMEALP 201 (249)
Q Consensus 126 l~~Ll~~L~S~~D~~~Q---LeAL~eLrelLSmsnep~I~~fp-~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp 201 (249)
++.|++.+++. .+..+ ..++..+++. .+|. ...+ .+.+++.|+..|++. ++.++.++..+|..+++..+
T Consensus 106 lp~ll~~l~dk-k~~V~~aa~~al~~i~~~----~~~~-~~~~~l~~ll~~l~~~l~~k-~~~vk~~al~~l~~~~~~~~ 178 (249)
T 2qk1_A 106 FTPLLDRTKEK-KPSVIEAIRKALLTICKY----YDPL-ASSGRNEDMLKDILEHMKHK-TPQIRMECTQLFNASMKEEK 178 (249)
T ss_dssp HHHHHHGGGCC-CHHHHHHHHHHHHHHHHH----SCTT-CTTCTTHHHHHHHHHHTTCS-SHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHcCC-CHHHHHHHHHHHHHHHHH----cccc-ccCCcHHHHHHHHHHHHcCC-ChHHHHHHHHHHHHHHHHcC
Confidence 45666667653 44433 2344444443 2332 2222 457999999999875 79999999999999999888
Q ss_pred h---hHHHHh--ccHHHHHHHhhcCCChhHHHHHHHHHHHhhhhchhHH
Q psy1198 202 R---SSAVVL--DAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRHSKAI 245 (249)
Q Consensus 202 ~---qT~~VV--GAVPiL~~kLLsi~yiDVAEQALwALenISgD~p~aI 245 (249)
. +....+ ..||.|++ +++-+..+|+++|..||+.|.+--++.-
T Consensus 179 ~~~~~l~~~l~~~iip~l~~-~l~D~~~~VR~aA~~~l~~i~~~vG~~~ 226 (249)
T 2qk1_A 179 DGYSTLQRYLKDEVVPIVIQ-IVNDTQPAIRTIGFESFAILIKIFGMNT 226 (249)
T ss_dssp SCSHHHHHHHTTTHHHHHHH-HHTCSSHHHHHHHHHHHHHHHHHHCSGG
T ss_pred CcchhHHHHHHHHHHHHHHH-HhcCCCHHHHHHHHHHHHHHHHHhCHHH
Confidence 4 322233 78899996 6666789999999999999887666543
No 62
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=96.91 E-value=0.0025 Score=60.87 Aligned_cols=75 Identities=15% Similarity=0.208 Sum_probs=61.7
Q ss_pred cChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCc-hhHHHHh-ccHHHHHHHhhcCCChhHHHHHHHHHHHhhhhchh
Q psy1198 167 KQVVPALITLLSMDHNFDMMNNACRALTYMMEALP-RSSAVVL-DAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRHSK 243 (249)
Q Consensus 167 ~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp-~qT~~VV-GAVPiL~~kLLsi~yiDVAEQALwALenISgD~p~ 243 (249)
..++|.+.+.|+. .++.++..|+|+|.+|+++.+ +.....+ ..||.|++ ++..++..|++.|+|+|++++...+.
T Consensus 365 ~~~l~~l~~~l~~-~~~~~r~~a~~~l~~i~~~~~~~~~~~~~~~~l~~l~~-~l~d~~~~vr~~a~~~l~~~~~~~~~ 441 (876)
T 1qgr_A 365 PHVLPFIKEHIKN-PDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIE-LMKDPSVVVRDTAAWTVGRICELLPE 441 (876)
T ss_dssp HHHHHHHHHHTTC-SSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHH-HHTCSSHHHHHHHHHHHHHHHHHCGG
T ss_pred HHHHHHHHHHccC-CChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH-HhCCCCHHHHHHHHHHHHHHHHhCch
Confidence 4677888888864 569999999999999999887 5444455 88999997 55667899999999999999988664
No 63
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=96.89 E-value=0.0027 Score=57.50 Aligned_cols=102 Identities=11% Similarity=0.134 Sum_probs=67.0
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchhHHHHh-
Q psy1198 130 LVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEALPRSSAVVL- 208 (249)
Q Consensus 130 l~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~qT~~VV- 208 (249)
+..|++ ++...+..++..|.+++..-.++ +....++|.|+++++ +.++.+...+++||..|++..+.. .+.
T Consensus 447 ~~~l~d-~~~~Vr~~a~~~l~~l~~~~~~~----~~~~~llp~l~~~~~-~~~~~~R~~a~~~l~~l~~~~~~~--~~~~ 518 (588)
T 1b3u_A 447 MAWLVD-HVYAIREAATSNLKKLVEKFGKE----WAHATIIPKVLAMSG-DPNYLHRMTTLFCINVLSEVCGQD--ITTK 518 (588)
T ss_dssp HHGGGC-SSHHHHHHHHHHHHHHHHHHCHH----HHHHHTHHHHHHTTT-CSCHHHHHHHHHHHHHHHHHHHHH--HHHH
T ss_pred HHHhcC-CcHHHHHHHHHHHHHHHHHhCch----hHHHHHHHHHHHHhh-CCCHHHHHHHHHHHHHHHHhcCHH--HHHH
Confidence 344554 35666666666666665442111 113467787777665 345777888888888888765543 233
Q ss_pred ccHHHHHHHhhcCCChhHHHHHHHHHHHhhhh
Q psy1198 209 DAVPTFLEKLQVIQCMDVAEQSLTALEMLSRR 240 (249)
Q Consensus 209 GAVPiL~~kLLsi~yiDVAEQALwALenISgD 240 (249)
..+|.|++ ++.-+..+|+..++|+|+.|...
T Consensus 519 ~~~~~l~~-~l~d~~~~Vr~~a~~~l~~l~~~ 549 (588)
T 1b3u_A 519 HMLPTVLR-MAGDPVANVRFNVAKSLQKIGPI 549 (588)
T ss_dssp HTHHHHHH-GGGCSCHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHh-hCCCCCchHHHHHHHHHHHHHHH
Confidence 77888885 66667788999999999988864
No 64
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=96.85 E-value=0.0014 Score=62.45 Aligned_cols=112 Identities=16% Similarity=0.206 Sum_probs=81.8
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcC---
Q psy1198 124 TKAQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEAL--- 200 (249)
Q Consensus 124 ~rl~~Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgt--- 200 (249)
..+..|+..+.. .|+-.|...++-|.++... ++ -....+++.+..+|++ .++.+.++|+|+|.++.+..
T Consensus 202 ~~~~~Ll~~l~~-~~~~~q~~il~~l~~l~~~--~~----~~~~~~l~~l~~~l~~-~~~~V~~ea~~~i~~l~~~~~~~ 273 (591)
T 2vgl_B 202 QNINKLLTALNE-CTEWGQIFILDCLSNYNPK--DD----REAQSICERVTPRLSH-ANSAVVLSAVKVLMKFLELLPKD 273 (591)
T ss_dssp HHHHHHHHHHHH-CCHHHHHHHHHHHHTSCCC--SH----HHHHHHHHHHTTCSCS-STTHHHHHHHHHHHHSCCSCCBT
T ss_pred HHHHHHHHcCCC-CCchHHHHHHHHHHHhCCC--Ch----HHHHHHHHHHHHHHcC-CChHHHHHHHHHHHHHhhccCCC
Confidence 347788888877 4888777666544433211 00 0124688888888875 56899999999999998754
Q ss_pred chhHHHHh-ccHHHHHHHhhcCCChhHHHHHHHHHHHhhhhchhHH
Q psy1198 201 PRSSAVVL-DAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRHSKAI 245 (249)
Q Consensus 201 p~qT~~VV-GAVPiL~~kLLsi~yiDVAEQALwALenISgD~p~aI 245 (249)
|+....++ .++|.|+. |++ ++.+|+--+|.+|.+|...+|+.+
T Consensus 274 ~~~~~~~~~~~~~~L~~-L~~-~d~~vr~~aL~~l~~i~~~~p~~~ 317 (591)
T 2vgl_B 274 SDYYNMLLKKLAPPLVT-LLS-GEPEVQYVALRNINLIVQKRPEIL 317 (591)
T ss_dssp TBSHHHHHHHTHHHHHH-HTT-SCHHHHHHHHHHHHHHHHHCCSTT
T ss_pred HHHHHHHHHHHHHHHHH-Hhc-CCccHHHHHHHHHHHHHHhChHHH
Confidence 55566566 88899995 766 778999999999999999888754
No 65
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=96.57 E-value=0.0077 Score=57.37 Aligned_cols=116 Identities=19% Similarity=0.198 Sum_probs=79.0
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCC---CCCCCCCCccChHHHHHHhcCCCC-CccHHHHHHHHHHHHHhcCc
Q psy1198 126 AQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGN---EDTLTGFPVKQVVPALITLLSMDH-NFDMMNNACRALTYMMEALP 201 (249)
Q Consensus 126 l~~Ll~~L~S~~D~~~QLeAL~eLrelLSmsn---ep~I~~fp~~glVP~LV~iLs~e~-n~dLQ~eAArALTNIasgtp 201 (249)
++.++..+++ ++..+..++..|..+..... .+.+..+ ...++|.|+++|+..+ +++++..++++|.+|++..+
T Consensus 456 l~~l~~~l~~--~~~v~~~a~~al~~l~~~~~~~~~~~l~~~-~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~ 532 (861)
T 2bpt_A 456 VQACLIGLQD--HPKVATNCSWTIINLVEQLAEATPSPIYNF-YPALVDGLIGAANRIDNEFNARASAFSALTTMVEYAT 532 (861)
T ss_dssp HHHHHHHHTS--CHHHHHHHHHHHHHHHHHHSSSSSCGGGGG-HHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHhcc--ChHHHHHHHHHHHHHHHhcccccchhhHHH-HHHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcc
Confidence 3445556654 36555555555544443221 1222222 2467888899998643 48899999999999999999
Q ss_pred hhHHHHh-ccHHHHHHHhhcC--------------CChhHHHHHHHHHHHhhhhchhH
Q psy1198 202 RSSAVVL-DAVPTFLEKLQVI--------------QCMDVAEQSLTALEMLSRRHSKA 244 (249)
Q Consensus 202 ~qT~~VV-GAVPiL~~kLLsi--------------~yiDVAEQALwALenISgD~p~a 244 (249)
+.....+ ..+|.|+++|... ++.++...++++|.+|....+..
T Consensus 533 ~~~~~~~~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~ 590 (861)
T 2bpt_A 533 DTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSS 590 (861)
T ss_dssp GGGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGG
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 8876666 8889999877642 25668889999999998766553
No 66
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=96.55 E-value=0.025 Score=56.80 Aligned_cols=141 Identities=16% Similarity=0.172 Sum_probs=99.6
Q ss_pred cchhHHHHhhCCCCCCCCCCccCccchhhHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHhhcCCCCCC--------C--
Q psy1198 94 TSLLSGVASSSSGPSHAPGAALDSESEDTATKAQQLLVSLQAI-GDEDQQLQAVVEMCQMLVMGNEDTL--------T-- 162 (249)
Q Consensus 94 ~~r~q~Llkrr~l~~~~~gs~~~~~~s~~~~rl~~Ll~~L~S~-~D~~~QLeAL~eLrelLSmsnep~I--------~-- 162 (249)
+.|-.+++.-|++....+- .-...-++.++..|+.+ +|.+..=..|.-|+.+++-..++.- +
T Consensus 37 eDRR~Av~~Lk~~sk~y~~-------~Vg~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~ 109 (651)
T 3grl_A 37 DDRRNAVRALKSLSKKYRL-------EVGIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEVEENSTRQSEDL 109 (651)
T ss_dssp HHHHHHHHHHHHTTTTTTT-------HHHHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC--------------CH
T ss_pred hHHHHHHHHHHHHHHHhHH-------HhhhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcccccccccccchHH
Confidence 4666677766666443331 11123488889888753 3555555667777787775433211 1
Q ss_pred ------CCC-ccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchhHHHHh----ccHHHHHHHhhcCCChhHHHHHH
Q psy1198 163 ------GFP-VKQVVPALITLLSMDHNFDMMNNACRALTYMMEALPRSSAVVL----DAVPTFLEKLQVIQCMDVAEQSL 231 (249)
Q Consensus 163 ------~fp-~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~qT~~VV----GAVPiL~~kLLsi~yiDVAEQAL 231 (249)
.|. ....|+.|+.+|+. +++.+.+.+.++|+.|+...|+.+...| ++||.|++ +|+.+..-|+-.++
T Consensus 110 ~~~~~d~f~~~~~~i~~Ll~lL~~-~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~-lL~d~rE~iRneal 187 (651)
T 3grl_A 110 GSQFTEIFIKQQENVTLLLSLLEE-FDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMD-LLADSREVIRNDGV 187 (651)
T ss_dssp HHHHHHHHHHSTHHHHHHHHHTTC-CCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHG-GGGCSSHHHHHHHH
T ss_pred HHHHHHHHHcCCccHHHHHHHhcC-ccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHH-HHhCchHHHHHHHH
Confidence 111 23569999999975 5699999999999999999999665555 89999997 77777899999999
Q ss_pred HHHHHhhhhchh
Q psy1198 232 TALEMLSRRHSK 243 (249)
Q Consensus 232 wALenISgD~p~ 243 (249)
-.|-+|+++++.
T Consensus 188 lLL~~Lt~~n~~ 199 (651)
T 3grl_A 188 LLLQALTRSNGA 199 (651)
T ss_dssp HHHHHHHTTCHH
T ss_pred HHHHHHhcCCHH
Confidence 999999998865
No 67
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=96.33 E-value=0.0045 Score=62.17 Aligned_cols=115 Identities=17% Similarity=0.126 Sum_probs=90.3
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCC-CCC-CC-ccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhc
Q psy1198 123 ATKAQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDT-LTG-FP-VKQVVPALITLLSMDHNFDMMNNACRALTYMMEA 199 (249)
Q Consensus 123 ~~rl~~Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~-I~~-fp-~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasg 199 (249)
...+.-+++-|++ +|.+..+-+++-|+-++.-. |. ... +- ...-||+||.+|+.+ ...++.||.-.|++|...
T Consensus 121 ~~~i~~Ll~lL~~-~df~vR~~alqlL~~L~~~r--~~~~Q~~Il~~p~gi~~Lv~lL~d~-rE~iRneallLL~~Lt~~ 196 (651)
T 3grl_A 121 QENVTLLLSLLEE-FDFHVRWPGVKLLTSLLKQL--GPQVQQIILVSPMGVSRLMDLLADS-REVIRNDGVLLLQALTRS 196 (651)
T ss_dssp THHHHHHHHHTTC-CCHHHHHHHHHHHHHHHHHS--HHHHHHHHHHSTTHHHHHHGGGGCS-SHHHHHHHHHHHHHHHTT
T ss_pred CccHHHHHHHhcC-ccHHHHHHHHHHHHHHHhcC--cHHHHHHHHhCcccHHHHHHHHhCc-hHHHHHHHHHHHHHHhcC
Confidence 3456777888888 59999999999888777552 22 222 11 227899999999854 588999999999999999
Q ss_pred CchhHHHHh--ccHHHHHHHhhcCCCh----hHHHHHHHHHHHhhhhch
Q psy1198 200 LPRSSAVVL--DAVPTFLEKLQVIQCM----DVAEQSLTALEMLSRRHS 242 (249)
Q Consensus 200 tp~qT~~VV--GAVPiL~~kLLsi~yi----DVAEQALwALenISgD~p 242 (249)
+++-=..|+ ||++.|.+ +...+-. -|.+-|+..|.|+.+..+
T Consensus 197 n~~iQklVAFEnaFe~Lf~-Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~ 244 (651)
T 3grl_A 197 NGAIQKIVAFENAFERLLD-IITEEGNSDGGIVVEDCLILLQNLLKNNN 244 (651)
T ss_dssp CHHHHHHHHHTTHHHHHHH-HHHHHTGGGSHHHHHHHHHHHHHHHTTCH
T ss_pred CHHHHHHHHHhccHHHHHH-HHHhcCCCccchhHHHHHHHHHHHHhcCH
Confidence 997766666 99999997 6654444 689999999999999886
No 68
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=96.24 E-value=0.013 Score=59.55 Aligned_cols=112 Identities=17% Similarity=0.164 Sum_probs=83.3
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchh-
Q psy1198 125 KAQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEALPRS- 203 (249)
Q Consensus 125 rl~~Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~q- 203 (249)
-++.+++.|.+ .++..+..|+..|+++.....++ -...+++.|++.|..+ ++.++..|+.+|..|++..+..
T Consensus 49 il~~Ll~~L~d-~~~~vR~~A~~~L~~l~~~~~~~-----~~~~i~~~Ll~~l~d~-~~~vR~~a~~~L~~i~~~l~~~~ 121 (1230)
T 1u6g_C 49 VVKMILKLLED-KNGEVQNLAVKCLGPLVSKVKEY-----QVETIVDTLCTNMLSD-KEQLRDISSIGLKTVIGELPPAS 121 (1230)
T ss_dssp HHHHHHHHTTC-SSHHHHHHHHHHHHHHHTTSCHH-----HHHHHHHHHHHHTTCS-SSHHHHHHHHHHHHHHHHCC---
T ss_pred HHHHHHHHhcC-CCHHHHHHHHHHHHHHHHhCCHH-----HHHHHHHHHHHHhcCC-cHHHHHHHHHHHHHHHHhCCCcc
Confidence 35667778886 58888888999998887543221 1246788888888654 5788999999999999988764
Q ss_pred -----HHHHh-ccHHHHHHHhhcCCChhHHHHHHHHHHHhhhhchh
Q psy1198 204 -----SAVVL-DAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRHSK 243 (249)
Q Consensus 204 -----T~~VV-GAVPiL~~kLLsi~yiDVAEQALwALenISgD~p~ 243 (249)
..... ..+|.|++.|.+.+..++++.++.+|.++..+.++
T Consensus 122 ~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~ 167 (1230)
T 1u6g_C 122 SGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGG 167 (1230)
T ss_dssp --CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCS
T ss_pred cccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhHh
Confidence 22334 78999997554467889999999999999976554
No 69
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=95.79 E-value=0.11 Score=44.35 Aligned_cols=107 Identities=18% Similarity=0.126 Sum_probs=74.8
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCC--C-CccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchh---
Q psy1198 130 LVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTG--F-PVKQVVPALITLLSMDHNFDMMNNACRALTYMMEALPRS--- 203 (249)
Q Consensus 130 l~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~--f-p~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~q--- 203 (249)
-+.|.+. +=...++|+++|.+++........+. + ....+++.|-.+|. |.|..+|..++.||..++......
T Consensus 15 ~e~l~sk-~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~-DsN~~v~~~al~~l~~~~~~~~~~~~~ 92 (278)
T 4ffb_C 15 EERLTYK-LWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYIT-DSNVVAQEQAIVALNSLIDAFASSSLK 92 (278)
T ss_dssp HHHTTCS-SHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTT-CSSHHHHHHHHHHHHHHHTTCC---CC
T ss_pred HHhcccC-cHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhc-cchHHHHHHHHHHHHHHHHHhhhhhcc
Confidence 3567774 77888999999999987643222211 1 12456777778885 678999999999999999865432
Q ss_pred ---HHHHh-ccHHHHHHHhhcCCChhHHHHHHHHHHHhh
Q psy1198 204 ---SAVVL-DAVPTFLEKLQVIQCMDVAEQSLTALEMLS 238 (249)
Q Consensus 204 ---T~~VV-GAVPiL~~kLLsi~yiDVAEQALwALenIS 238 (249)
...++ ..+|.|++|.+.....-+.+.++.+|-.+.
T Consensus 93 ~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~ 131 (278)
T 4ffb_C 93 NAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLC 131 (278)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHH
Confidence 33344 789999999777677778888888776554
No 70
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=95.52 E-value=0.014 Score=56.17 Aligned_cols=72 Identities=15% Similarity=0.154 Sum_probs=59.5
Q ss_pred cChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchhHHHHhccHHHHHHHhhcCCChhHHHHHHHHHHHhhhhchh
Q psy1198 167 KQVVPALITLLSMDHNFDMMNNACRALTYMMEALPRSSAVVLDAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRHSK 243 (249)
Q Consensus 167 ~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~qT~~VVGAVPiL~~kLLsi~yiDVAEQALwALenISgD~p~ 243 (249)
..++|.+.++|++ .+|.+..-|++||.+|+...|+... ..+|.+.+ |++-++..|.-.|+++|..|....|+
T Consensus 141 ~~l~~~l~~~L~~-~~~~VRk~A~~al~~l~~~~p~~v~---~~~~~l~~-lL~D~d~~V~~~Al~~L~~i~~~~~~ 212 (618)
T 1w63_A 141 RDLAGEVEKLLKT-SNSYLRKKAALCAVHVIRKVPELME---MFLPATKN-LLNEKNHGVLHTSVVLLTEMCERSPD 212 (618)
T ss_dssp HHHHHHHHHHHHS-CCHHHHHHHHHHHHHHHHHCGGGGG---GGGGGTTT-STTCCCHHHHHHHHHHHHHHCCSHHH
T ss_pred HHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHHChHHHH---HHHHHHHH-HhCCCCHhHHHHHHHHHHHHHHhChH
Confidence 3568888899975 5799999999999999999997543 66777775 66667889999999999999987764
No 71
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=95.00 E-value=0.14 Score=46.56 Aligned_cols=94 Identities=15% Similarity=0.169 Sum_probs=70.0
Q ss_pred HhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcC--chhHHHHhcc
Q psy1198 133 LQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEAL--PRSSAVVLDA 210 (249)
Q Consensus 133 L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgt--p~qT~~VVGA 210 (249)
+.+ .++-..+++...+-++ . +. -+...++..+..+| ...++++|-.+-++||||+.-+ |+....|+.-
T Consensus 124 ik~-~~~il~~eaae~Lgkl------k-v~-~~~~~V~~~l~sLl-~Skd~~vK~agl~~L~eia~~S~D~~i~~~I~~e 193 (265)
T 3b2a_A 124 LES-PDDMMRIETIDVLSKL------Q-PL-EDSKLVRTYINELV-VSPDLYTKVAGFCLFLNMLNSSADSGHLTLILDE 193 (265)
T ss_dssp TTS-CCHHHHHHHHHHHHHC------C-BS-CCCHHHHHHHHHHH-TCSSHHHHHHHHHHHHHHGGGCSSCCCGGGTTTT
T ss_pred hcC-CCchHHHHHHHHhCcC------C-cc-cchHHHHHHHHHHH-hCCChhHHHHHHHHHHHhhcccCCHHHHHHHHHH
Confidence 354 5777888887777766 1 11 12357788888888 4568999999999999999855 4445656666
Q ss_pred HHHHHHHhhcCCChhHHHHHHHHHHHhhhh
Q psy1198 211 VPTFLEKLQVIQCMDVAEQSLTALEMLSRR 240 (249)
Q Consensus 211 VPiL~~kLLsi~yiDVAEQALwALenISgD 240 (249)
||-|+ ++++..|.|-+|.+|++|...
T Consensus 194 I~elL----~~eD~~l~e~aLd~Le~ils~ 219 (265)
T 3b2a_A 194 IPSLL----QNDNEFIVELALDVLEKALSF 219 (265)
T ss_dssp HHHHH----TCSCHHHHHHHHHHHHHHTTS
T ss_pred HHHHH----cCCCHHHHHHHHHHHHHHHcC
Confidence 77655 567999999999999999764
No 72
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=94.94 E-value=0.11 Score=54.16 Aligned_cols=107 Identities=20% Similarity=0.211 Sum_probs=78.6
Q ss_pred hHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCc
Q psy1198 122 TATKAQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEALP 201 (249)
Q Consensus 122 ~~~rl~~Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp 201 (249)
....+++|+..+.++.+...+-.|+..|..++.. ++ ..+|+++.+|.+..++.+.+-|++||-.|+-++|
T Consensus 575 n~~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g--~~--------e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~ 644 (963)
T 4ady_A 575 NNSAVKRLLHVAVSDSNDDVRRAAVIALGFVLLR--DY--------TTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKG 644 (963)
T ss_dssp CHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSS--SC--------SSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSC
T ss_pred CHHHHHHHHHHhccCCcHHHHHHHHHHHHhhccC--CH--------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCC
Confidence 3445666776665444555555666666655433 11 3589999988888889999999999999999998
Q ss_pred hhHHHHhccHHHHHHHhhcCCChhHHHHHHHHHHHhhhhchhH
Q psy1198 202 RSSAVVLDAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRHSKA 244 (249)
Q Consensus 202 ~qT~~VVGAVPiL~~kLLsi~yiDVAEQALwALenISgD~p~a 244 (249)
.. .+|..|. +|+.-+..+|+..|+-+|++|-.....+
T Consensus 645 ~~-----~aid~L~-~L~~D~d~~Vrq~Ai~ALG~Ig~gtnna 681 (963)
T 4ady_A 645 LQ-----SAIDVLD-PLTKDPVDFVRQAAMIALSMILIQQTEK 681 (963)
T ss_dssp CH-----HHHHHHH-HHHTCSSHHHHHHHHHHHHHHSTTCCTT
T ss_pred cH-----HHHHHHH-HHccCCCHHHHHHHHHHHHHHhcCCccc
Confidence 52 3456555 5777789999999999999998765554
No 73
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=94.93 E-value=0.069 Score=51.34 Aligned_cols=109 Identities=19% Similarity=0.223 Sum_probs=74.3
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchhHHH
Q psy1198 127 QQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEALPRSSAV 206 (249)
Q Consensus 127 ~~Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~qT~~ 206 (249)
+.+...|++ .+++..-.|+..+.++.... |. . ...+++.+.++|. +.++.++..|+++|..|++..|+....
T Consensus 145 ~~l~~~L~~-~~~~VRk~A~~al~~l~~~~--p~---~-v~~~~~~l~~lL~-D~d~~V~~~Al~~L~~i~~~~~~~~~~ 216 (618)
T 1w63_A 145 GEVEKLLKT-SNSYLRKKAALCAVHVIRKV--PE---L-MEMFLPATKNLLN-EKNHGVLHTSVVLLTEMCERSPDMLAH 216 (618)
T ss_dssp HHHHHHHHS-CCHHHHHHHHHHHHHHHHHC--GG---G-GGGGGGGTTTSTT-CCCHHHHHHHHHHHHHHCCSHHHHHHH
T ss_pred HHHHHHHcC-CCHHHHHHHHHHHHHHHHHC--hH---H-HHHHHHHHHHHhC-CCCHhHHHHHHHHHHHHHHhChHHHHH
Confidence 344445566 47777777777777766542 21 1 2368888888886 467999999999999999877764333
Q ss_pred HhccHHHHHHHhhc--------------CCChhHHHHHHHHHHHhhhhchh
Q psy1198 207 VLDAVPTFLEKLQV--------------IQCMDVAEQSLTALEMLSRRHSK 243 (249)
Q Consensus 207 VVGAVPiL~~kLLs--------------i~yiDVAEQALwALenISgD~p~ 243 (249)
+...||.|++.|.+ ++..-+.-..+.+|.++....|.
T Consensus 217 ~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~ 267 (618)
T 1w63_A 217 FRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDD 267 (618)
T ss_dssp HHTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHH
T ss_pred HHHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHH
Confidence 44889999976654 23444555677778777766554
No 74
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=94.87 E-value=0.065 Score=48.66 Aligned_cols=114 Identities=19% Similarity=0.198 Sum_probs=82.4
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchh
Q psy1198 124 TKAQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEALPRS 203 (249)
Q Consensus 124 ~rl~~Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~q 203 (249)
..+..++.-|.+ .|+..++.+|.-|-|+|... +........+.++|.+|+++. +.|..+-+-|.|||-.|.++.|-.
T Consensus 33 ~~l~~L~~LL~d-kD~~vk~raL~~LeellK~~-~~~l~~~~~e~~Ld~iI~llk-~~dEkval~A~r~L~~LLe~vpL~ 109 (265)
T 3b2a_A 33 RALFLILELAGE-DDETTRLRAFVALGEILKRA-DSDLRMMVLERHLDVFINALS-QENEKVTIKALRALGYLVKDVPMG 109 (265)
T ss_dssp HHHHHHHHHTTS-SCHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTCC-STTHHHHHHHHHHHHHHHTTCCBC
T ss_pred hHHHHHHHHHhc-cchHHHHHHHHHHHHHHHhc-cccccHHHHHHHHHHHHHHHh-ccchhHHHHHHHHHHHHHcCCCCC
Confidence 355556666666 59999999999999999874 222223456789999999995 457899999999999999998865
Q ss_pred HHHHh-----------------------------------ccHHHHHHHhhcCCChhHHHHHHHHHHHhhhhc
Q psy1198 204 SAVVL-----------------------------------DAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRH 241 (249)
Q Consensus 204 T~~VV-----------------------------------GAVPiL~~kLLsi~yiDVAEQALwALenISgD~ 241 (249)
-...+ ..+-.+. .|+.+.+.+|..-++.+|=||+..+
T Consensus 110 ~~~y~Kl~~aL~dlik~~~~il~~eaae~Lgklkv~~~~~~V~~~l~-sLl~Skd~~vK~agl~~L~eia~~S 181 (265)
T 3b2a_A 110 SKTFLKAAKTLVSLLESPDDMMRIETIDVLSKLQPLEDSKLVRTYIN-ELVVSPDLYTKVAGFCLFLNMLNSS 181 (265)
T ss_dssp HHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHCCBSCCCHHHHHHHH-HHHTCSSHHHHHHHHHHHHHHGGGC
T ss_pred HHHHHHHHHHHHHHhcCCCchHHHHHHHHhCcCCcccchHHHHHHHH-HHHhCCChhHHHHHHHHHHHhhccc
Confidence 43332 1122233 4667777888888888888888755
No 75
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=94.40 E-value=0.19 Score=46.99 Aligned_cols=116 Identities=15% Similarity=0.160 Sum_probs=89.2
Q ss_pred hhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcC
Q psy1198 121 DTATKAQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEAL 200 (249)
Q Consensus 121 ~~~~rl~~Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgt 200 (249)
.+..+..+|++.|++ .+....-.+|..|.++++.+ .+-..+|+..+=+..|+++... -..+.|-.+-|||-+||+-.
T Consensus 115 sps~ra~~iiekL~~-~~~~~lr~aLfsLk~~~q~D-~~Fa~EFI~~~GL~~Li~vi~~-~~gN~q~Y~L~AL~~LM~~v 191 (339)
T 3dad_A 115 QLSVRVNAILEKLYS-SSGPELRRSLFSLKQIFQED-KDLVPEFVHSEGLSCLIRVGAA-ADHNYQSYILRALGQLMLFV 191 (339)
T ss_dssp CHHHHHHHHHHHHHH-CCHHHHHHHHHHHHHHHHTC-TTHHHHHHHTTHHHHHHHHHTT-SCHHHHHHHHHHHHHHTTSH
T ss_pred CcHHHHHHHHHHHhc-CCcHHHHHHHHHHHHHhhcc-hHHHHHHHHhccHHHHHHHHHh-cChHHHHHHHHHHHHHHhcc
Confidence 456789999999998 47888889999999999842 3333468877889999999865 36899999999999999932
Q ss_pred chhHHHHh---ccHHHHHHHhhcCCChhHHHHHHHHHHHhhhhc
Q psy1198 201 PRSSAVVL---DAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRH 241 (249)
Q Consensus 201 p~qT~~VV---GAVPiL~~kLLsi~yiDVAEQALwALenISgD~ 241 (249)
.-...|| .-|-.+.. |.++.+..|..+||..|+.+.--+
T Consensus 192 -~Gm~gvvs~~~fI~~lys-lv~s~~~~V~k~AL~LL~v~V~~s 233 (339)
T 3dad_A 192 -DGMLGVVAHSDTIQWLYT-LCASLSRLVVKTALKLLLVFVEYS 233 (339)
T ss_dssp -HHHHHHHHCHHHHHHHHH-GGGCSCHHHHHHHHHHHHHHHHHC
T ss_pred -ccccchhCCHHHHHHHHH-HHcCccHHHHHHHHHHHHHHHccC
Confidence 2333455 45666665 666788999999999999985443
No 76
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=91.90 E-value=1.2 Score=39.50 Aligned_cols=107 Identities=7% Similarity=0.111 Sum_probs=72.5
Q ss_pred hhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhc
Q psy1198 120 EDTATKAQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEA 199 (249)
Q Consensus 120 s~~~~rl~~Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasg 199 (249)
....+|+-+++...+...| ...++.|.+++|++... +|. + -..|+|.++.|- .+.+.+++...+.-|..++.-
T Consensus 11 ~~~~~~v~~lln~A~~~~~-~~kl~~L~qa~el~~~~-dp~---l-l~~~l~~il~~~-~~~~~~vrk~~~~Fi~e~~~~ 83 (257)
T 3gs3_A 11 ATARAKVVDWCNELVIASP-STKCELLAKVQETVLGS-CAE---L-AEEFLESVLSLA-HDSNMEVRKQVVAFVEQVCKV 83 (257)
T ss_dssp HHHHHHHHHHHHHHTTCCH-HHHHHHHHHHHHHHTTT-TGG---G-HHHHHHHHHGGG-GCSCHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHhhhcCc-HHHHHHHHHHHHHHHcc-CHh---H-HHHHHHHHHHhc-cCChHHHHHHHHHHHHHHHHH
Confidence 3445667777776665445 58899999999987653 443 2 357899999975 345677766555555555533
Q ss_pred CchhHHHHhccHHHHHHHhhcCCChhHHHHHHHHHHHh
Q psy1198 200 LPRSSAVVLDAVPTFLEKLQVIQCMDVAEQSLTALEML 237 (249)
Q Consensus 200 tp~qT~~VVGAVPiL~~kLLsi~yiDVAEQALwALenI 237 (249)
....+.-+|+.|.. |++.++..|..+++.|.-+|
T Consensus 84 ---k~~l~~~~l~~L~~-Ll~d~d~~V~K~~I~~~~~i 117 (257)
T 3gs3_A 84 ---KVELLPHVINVVSM-LLRDNSAQVIKRVIQACGSI 117 (257)
T ss_dssp ---CGGGHHHHHHHHHH-HTTCSCHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHH
Confidence 33322377888885 67778899999999987664
No 77
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=91.44 E-value=0.32 Score=47.11 Aligned_cols=104 Identities=12% Similarity=0.072 Sum_probs=74.5
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcC-CCCCccHHHHHHHHHHHHHhcCchhHHHHh
Q psy1198 130 LVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLS-MDHNFDMMNNACRALTYMMEALPRSSAVVL 208 (249)
Q Consensus 130 l~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs-~e~n~dLQ~eAArALTNIasgtp~qT~~VV 208 (249)
...|++ .++..+-.||+-|+.+-. |. + ...++|.+.++|. .+.+|-+..-||-|+++|....|+.... -
T Consensus 117 ~kDl~~-~n~~ir~lALr~L~~i~~----~e---~-~~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~~~~-~ 186 (621)
T 2vgl_A 117 KNDLAS-RNPTFMGLALHCIANVGS----RE---M-AEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDLVPM-G 186 (621)
T ss_dssp HHHHHS-CCHHHHHHHHHHHHHHCC----HH---H-HHHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGGCCC-C
T ss_pred HHhcCC-CCHHHHHHHHHHhhccCC----HH---H-HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhhcCc-h
Confidence 334555 355555556666665521 11 2 3467888888882 2457999999999999999988864421 1
Q ss_pred ccHHHHHHHhhcCCChhHHHHHHHHHHHhhhhchhH
Q psy1198 209 DAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRHSKA 244 (249)
Q Consensus 209 GAVPiL~~kLLsi~yiDVAEQALwALenISgD~p~a 244 (249)
+.++.|.+ |++-++..|..-|+.+|..|..+.|..
T Consensus 187 ~~~~~l~~-lL~d~d~~V~~~a~~~l~~i~~~~~~~ 221 (621)
T 2vgl_A 187 DWTSRVVH-LLNDQHLGVVTAATSLITTLAQKNPEE 221 (621)
T ss_dssp SCHHHHHH-HTTCSCHHHHHHHHHHHHHHHHHCHHH
T ss_pred hHHHHHHH-HhCCCCccHHHHHHHHHHHHHHhChHH
Confidence 67888886 667678899999999999999988864
No 78
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=90.93 E-value=0.23 Score=42.63 Aligned_cols=66 Identities=12% Similarity=0.113 Sum_probs=47.9
Q ss_pred CccHHHHHHHHHHHHHhcCchhHHHHh---ccHHHHHHHhhcCCChhHHHHHHHHHHHhhhh----c-hhHHhhcC
Q psy1198 182 NFDMMNNACRALTYMMEALPRSSAVVL---DAVPTFLEKLQVIQCMDVAEQSLTALEMLSRR----H-SKAILQAF 249 (249)
Q Consensus 182 n~dLQ~eAArALTNIasgtp~qT~~VV---GAVPiL~~kLLsi~yiDVAEQALwALenISgD----~-p~aIL~a~ 249 (249)
+.++|.++.+||-.|+.-.+ -...|+ ..|..|+. .+.++.+.+.-++++.|--|+-- + -..||+||
T Consensus 67 ~~~~~~~~l~CLkalmn~~~-G~~~vl~~~~~i~~l~~-~L~s~~~~~r~~~leLL~~lc~~~~~~G~~~~VL~Al 140 (233)
T 2f31_A 67 DSRNQHEIIRCLKAFMNNKF-GIKTMLETEEGILLLVR-AMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAM 140 (233)
T ss_dssp HHHHHHHHHHHHHHHTSSHH-HHHHHHTSSSHHHHHHT-TCCTTSHHHHHHHHHHHHHHHTCSSSSCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCChH-HHHHHHcCcHHHHHHHH-HhCCCCchHHHHHHHHHHHHHhCCCCCChHHHHHHHH
Confidence 57889999999999986322 234444 78888885 77889999999998877665532 3 45677664
No 79
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=90.71 E-value=0.084 Score=48.93 Aligned_cols=75 Identities=11% Similarity=0.080 Sum_probs=35.9
Q ss_pred cChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchhHHHHhccHHHHHHHhhcCCChhHHHHHHHHHHHhhhhchhHHh
Q psy1198 167 KQVVPALITLLSMDHNFDMMNNACRALTYMMEALPRSSAVVLDAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRHSKAIL 246 (249)
Q Consensus 167 ~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~qT~~VVGAVPiL~~kLLsi~yiDVAEQALwALenISgD~p~aIL 246 (249)
..+++.|..+|++ .++-+.|||+|+|++|-+..+ ..+.-++.+|. ++++++..++.=-+|..|-+|+..+|..+-
T Consensus 249 ~~~~~~l~~~L~~-~~~aVvyEa~k~I~~l~~~~~---~~~~~a~~~L~-~fLss~d~niryvaLr~L~~l~~~~P~~v~ 323 (355)
T 3tjz_B 249 SPLFDFIESCLRN-KHEMVVYEAASAIVNLPGCSA---KELAPAVSVLQ-LFCSSPKAALRYAAVRTLNKVAMKHPSAVT 323 (355)
T ss_dssp --------CCCCC-SSHHHHHHHHHHHTC--------------CCCTHH-HHHHSSSSSSHHHHHHCC------------
T ss_pred HHHHHHHHHHHcC-CChHHHHHHHHHHHhccCCCH---HHHHHHHHHHH-HHHcCCCchHHHHHHHHHHHHHHHCcHHHH
Confidence 4577778888874 578999999999999866222 22226666666 466667778888899999999998887764
No 80
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=90.18 E-value=2.4 Score=41.61 Aligned_cols=76 Identities=20% Similarity=0.307 Sum_probs=57.4
Q ss_pred cChHHHHHHhcCC--CCCccHHHHHHHHHHHHHhcCchhHHHHhccHHHHHHHhhcCCChhHHHHHHHHHHHhhhhchhH
Q psy1198 167 KQVVPALITLLSM--DHNFDMMNNACRALTYMMEALPRSSAVVLDAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRHSKA 244 (249)
Q Consensus 167 ~glVP~LV~iLs~--e~n~dLQ~eAArALTNIasgtp~qT~~VVGAVPiL~~kLLsi~yiDVAEQALwALenISgD~p~a 244 (249)
..++|.++.+|-. ++++.+...+||+|..+++-+.+....+-..+|.|++.|.+ .+|++.|.++|.+|+.++++.
T Consensus 485 ~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~~~l~~vl~~l~~~l~~---~~V~~~A~~al~~l~~~~~~~ 561 (963)
T 2x19_B 485 SDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHPVMINSVLPLVLHALGN---PELSVSSVSTLKKICRECKYD 561 (963)
T ss_dssp CSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCHHHHTTTHHHHHHHTTC---GGGHHHHHHHHHHHHHHTGGG
T ss_pred hHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHhCC---chHHHHHHHHHHHHHHHHHHH
Confidence 3567777766521 24688999999999999987665544333899999986633 789999999999999887765
Q ss_pred H
Q psy1198 245 I 245 (249)
Q Consensus 245 I 245 (249)
+
T Consensus 562 l 562 (963)
T 2x19_B 562 L 562 (963)
T ss_dssp C
T ss_pred H
Confidence 3
No 81
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=89.95 E-value=1.5 Score=41.21 Aligned_cols=106 Identities=11% Similarity=0.225 Sum_probs=72.9
Q ss_pred hhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcC
Q psy1198 121 DTATKAQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEAL 200 (249)
Q Consensus 121 ~~~~rl~~Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgt 200 (249)
...+|+-++++..+...+ ..+++.|.+++|++... +|. + -+.|+|.+++|-.. .+.+++...+-.|...+
T Consensus 22 ~~~~~v~~lln~A~~~~~-~~Kl~~L~q~~EL~l~~-dps---L-l~~fl~~il~f~~d-~~~~vRk~~a~FieEa~--- 91 (386)
T 3o2t_A 22 TTSERVVDLLNQAALITN-DSKITVLKQVQELIINK-DPT---L-LDNFLDEIIAFQAD-KSIEVRKFVIGFIEEAC--- 91 (386)
T ss_dssp CHHHHHHHHHHHHHHCCS-THHHHHHHHHHHHHHTT-CGG---G-GGGGHHHHHGGGGC-SCHHHHHHHHHHHHHHH---
T ss_pred cHHHHHHHHHHhhhccCh-HHHHHHHHHHHHHHhcc-CHH---H-HHHHHHHHHHhccC-CcHHHHHHHHHHHHHHH---
Confidence 445677777776554224 46899999999987653 444 2 36899999998764 35777654444444444
Q ss_pred chhHHHHhccHHHHHHHhhcCCChhHHHHHHHHHHHh
Q psy1198 201 PRSSAVVLDAVPTFLEKLQVIQCMDVAEQSLTALEML 237 (249)
Q Consensus 201 p~qT~~VVGAVPiL~~kLLsi~yiDVAEQALwALenI 237 (249)
......+.-+|+.|.. |++.++..|..+++.|..+|
T Consensus 92 ~~~~el~~~~l~~L~~-LL~d~d~~V~K~~I~~~tsl 127 (386)
T 3o2t_A 92 KRDIELLLKLIANLNM-LLRDENVNVVKKAILTMTQL 127 (386)
T ss_dssp HHCGGGHHHHHHHHHH-HHTCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHH
Confidence 3344433478888885 77778899999999988776
No 82
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=89.36 E-value=1.3 Score=42.95 Aligned_cols=101 Identities=17% Similarity=0.243 Sum_probs=70.7
Q ss_pred HHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchhHHHHhcc
Q psy1198 131 VSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEALPRSSAVVLDA 210 (249)
Q Consensus 131 ~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~qT~~VVGA 210 (249)
.-|.+ .|+..++.+|..|.+++... |..+ + ...+.+.++.+|+.++++.+...|...|+.|++ ++....|
T Consensus 336 ~~L~~-~~~niry~aL~~l~~l~~~~--~~~~-~-~~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~--~~Nv~~I--- 405 (621)
T 2vgl_A 336 QFLQH-RETNLRYLALESMCTLASSE--FSHE-A-VKTHIETVINALKTERDVSVRQRAVDLLYAMCD--RSNAQQI--- 405 (621)
T ss_dssp HHSSC-SCHHHHHHHHHHHHHHTTCT--TTHH-H-HHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHCC--HHHHHHH---
T ss_pred HHhcC-CCcchHHHHHHHHHHHHhcc--CcHH-H-HHHHHHHHHHHhccCCCHhHHHHHHHHHHHHcC--hhhHHHH---
Confidence 33455 58999999999999988653 2111 1 356788899999845568899999999999975 4443433
Q ss_pred HHHHHHHhhcCCChhHHHHHHHHHHHhhhhch
Q psy1198 211 VPTFLEKLQVIQCMDVAEQSLTALEMLSRRHS 242 (249)
Q Consensus 211 VPiL~~kLLsi~yiDVAEQALwALenISgD~p 242 (249)
|..|.+-|.+ .+.++++.++.+++.++...|
T Consensus 406 v~eL~~yl~~-~d~~~~~~~v~~I~~la~k~~ 436 (621)
T 2vgl_A 406 VAEMLSYLET-ADYSIREEIVLKVAILAEKYA 436 (621)
T ss_dssp HHHHHHHHHH-CCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHh-cCHHHHHHHHHHHHHHHHhcC
Confidence 4444443333 467899999999999887654
No 83
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=88.25 E-value=0.65 Score=43.06 Aligned_cols=120 Identities=12% Similarity=0.096 Sum_probs=78.4
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCC----------CCCccHHHHHHHHHHHH
Q psy1198 127 QQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSM----------DHNFDMMNNACRALTYM 196 (249)
Q Consensus 127 ~~Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~----------e~n~dLQ~eAArALTNI 196 (249)
...|..|++.-.....+..|..|+..|.-..-.=+..|... =+..|+++|.. +.+.++|.++.+||-.|
T Consensus 69 ~~yi~~L~~~~~~~kl~~~L~sL~v~Lrt~~~sWV~~F~~~-Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkal 147 (383)
T 3eg5_B 69 MMYIQELRSGLRDMHLLSCLESLRVSLTSHPVSWVQTFGAE-GLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAF 147 (383)
T ss_dssp HHHHHHHTTTCCHHHHHHHHHHHHHHHHHSCHHHHHHHHHH-HHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccchhHHHHHHHHHHHHhhCccHHHHHHHHc-cHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHH
Confidence 34566676632233345678888888855432333357533 45777777742 23458899999999999
Q ss_pred HhcCchhHHHHh---ccHHHHHHHhhcCCChhHHHHHHHHHHHhhhhc-----hhHHhhcC
Q psy1198 197 MEALPRSSAVVL---DAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRH-----SKAILQAF 249 (249)
Q Consensus 197 asgtp~qT~~VV---GAVPiL~~kLLsi~yiDVAEQALwALenISgD~-----p~aIL~a~ 249 (249)
+.-.. -...|+ ..|..|+. ++.++++-+..+++..|--|.--. -+.||+||
T Consensus 148 mN~~~-G~~~vl~~~~~i~~l~~-~L~s~~~~~~~~aleLL~~lc~~~~~~gG~~~VL~Al 206 (383)
T 3eg5_B 148 MNNKF-GIKTMLETEEGILLLVR-AMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAM 206 (383)
T ss_dssp TSSHH-HHHHHHTCSSHHHHHHH-TCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHH
T ss_pred hcchh-hHHHHHcChHHHHHHHH-HhCCCchHHHHHHHHHHHHHHhCcCcCCcHHHHHHHH
Confidence 86332 234444 88999996 788899999999999887765422 45577664
No 84
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=88.13 E-value=2 Score=44.99 Aligned_cols=75 Identities=15% Similarity=0.138 Sum_probs=40.9
Q ss_pred ChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCch--hH-----------------HHHh----------ccHHHHHHHh
Q psy1198 168 QVVPALITLLSMDHNFDMMNNACRALTYMMEALPR--SS-----------------AVVL----------DAVPTFLEKL 218 (249)
Q Consensus 168 glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~--qT-----------------~~VV----------GAVPiL~~kL 218 (249)
..++.+++.|..+++|-+.+-|+.+|.--+-++.. .. .+|+ ..||.++++|
T Consensus 541 e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~e~v~rlv~~L 620 (963)
T 4ady_A 541 ELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDYTTVPRIVQLL 620 (963)
T ss_dssp GGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSCSSHHHHTTTG
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCHHHHHHHHHHH
Confidence 45667777776666677777776655321111111 00 0111 2456666656
Q ss_pred hcCCChhHHHHHHHHHHHhhhhch
Q psy1198 219 QVIQCMDVAEQSLTALEMLSRRHS 242 (249)
Q Consensus 219 Lsi~yiDVAEQALwALenISgD~p 242 (249)
++..+..|+--+.+||+.|+.-.|
T Consensus 621 ~~~~d~~VR~gAalALGli~aGn~ 644 (963)
T 4ady_A 621 SKSHNAHVRCGTAFALGIACAGKG 644 (963)
T ss_dssp GGCSCHHHHHHHHHHHHHHTSSSC
T ss_pred HhcCCHHHHHHHHHHHHHhccCCC
Confidence 666667777777777777654333
No 85
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=87.84 E-value=2.8 Score=35.48 Aligned_cols=72 Identities=14% Similarity=0.142 Sum_probs=51.5
Q ss_pred cChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchh---HHHHh-ccHHHHHHHhhcCCChhHHHHHHHHHHHhhhh
Q psy1198 167 KQVVPALITLLSMDHNFDMMNNACRALTYMMEALPRS---SAVVL-DAVPTFLEKLQVIQCMDVAEQSLTALEMLSRR 240 (249)
Q Consensus 167 ~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~q---T~~VV-GAVPiL~~kLLsi~yiDVAEQALwALenISgD 240 (249)
..++..++..|++ .||.++.++.-+|+++++-+... ...++ ..++.+. ++++..+.+|++.|+.++.-|-+-
T Consensus 138 ~~~~e~l~~~l~~-Knpkv~~~~l~~l~~~l~~fg~~~~~~k~~l~~i~~~l~-k~l~d~~~~VR~aA~~l~~~ly~~ 213 (278)
T 4ffb_C 138 TQSVELVIPFFEK-KLPKLIAAAANCVYELMAAFGLTNVNVQTFLPELLKHVP-QLAGHGDRNVRSQTMNLIVEIYKV 213 (278)
T ss_dssp HHHHHHHGGGGGC-SCHHHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHGGGHH-HHHTCSSHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhc-cCHHHHHHHHHHHHHHHHHhCCCcCCchhHHHHHHHHHH-HHHhCCcHHHHHHHHHHHHHHHHH
Confidence 4567788888875 57999999999999998754322 12223 3444555 577888999999999998776543
No 86
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=87.37 E-value=0.68 Score=45.83 Aligned_cols=75 Identities=17% Similarity=0.239 Sum_probs=53.5
Q ss_pred ChHHHHHHhc---C-CCCCccHHHHHHHHHHHHHhcCchhHHHHhccHHHHHHHhhcCCChhHHHHHHHHHHHhhhhchh
Q psy1198 168 QVVPALITLL---S-MDHNFDMMNNACRALTYMMEALPRSSAVVLDAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRHSK 243 (249)
Q Consensus 168 glVP~LV~iL---s-~e~n~dLQ~eAArALTNIasgtp~qT~~VVGAVPiL~~kLLsi~yiDVAEQALwALenISgD~p~ 243 (249)
..+|.++++| . .+.+|.+...|||+|..+++-+.+....+-..+|.|++.| + .+|++.|.+||.+|..++..
T Consensus 501 ~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l~~vl~~l~~~l-~---~~v~~~A~~al~~l~~~~~~ 576 (971)
T 2x1g_F 501 RQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAYIPPAINLLVRGL-N---SSMSAQATLGLKELCRDCQL 576 (971)
T ss_dssp CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----CHHHHHHHHHHHH-H---SSCHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh-C---hHHHHHHHHHHHHHHHHHHH
Confidence 4555555444 2 2337899999999999999877654432337888888766 3 68999999999999998876
Q ss_pred HHh
Q psy1198 244 AIL 246 (249)
Q Consensus 244 aIL 246 (249)
.+.
T Consensus 577 ~l~ 579 (971)
T 2x1g_F 577 QLK 579 (971)
T ss_dssp HHH
T ss_pred hcc
Confidence 643
No 87
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=86.74 E-value=1.7 Score=38.84 Aligned_cols=112 Identities=14% Similarity=0.100 Sum_probs=73.9
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHH-HhcCCCCCccHHHHHHHHHHHHHhcCchh--
Q psy1198 127 QQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALI-TLLSMDHNFDMMNNACRALTYMMEALPRS-- 203 (249)
Q Consensus 127 ~~Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV-~iLs~e~n~dLQ~eAArALTNIasgtp~q-- 203 (249)
+++...|.+. |...+++++..|.+.|+-..+..+.. .|-+++-+. .| .+.|+.+..-+.-.|..+++.+.+.
T Consensus 49 ~~~~~~lfs~-d~k~~~~ale~L~~~l~~~~~~~~~~--lDll~kw~~lr~--~d~N~~v~~~~L~~L~~l~~~l~~~~y 123 (266)
T 2of3_A 49 VSLMSQLFHK-DFKQHLAALDSLVRLADTSPRSLLSN--SDLLLKWCTLRF--FETNPAALIKVLELCKVIVELIRDTET 123 (266)
T ss_dssp HHHHHHHTCS-CHHHHHHHHHHHHHHHHHCHHHHHHT--HHHHHHHHHHHT--TSCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhcCC-CHHHHHHHHHHHHHHhhhChHHHHHH--HHHHHHHHHHHH--hCCCHHHHHHHHHHHHHHHHHHHhccc
Confidence 3456677884 99999999999999886522111100 112233222 22 3568889888888888887665543
Q ss_pred --HHHHh-ccHHHHHHHhhcCCChhHHHHHHHHHHHhhhhchhH
Q psy1198 204 --SAVVL-DAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRHSKA 244 (249)
Q Consensus 204 --T~~VV-GAVPiL~~kLLsi~yiDVAEQALwALenISgD~p~a 244 (249)
+...+ -.||.|++||-+. ...|+|++-.+|-.|..-+|..
T Consensus 124 ~~~~~ea~~~lP~LveKlGd~-k~~vR~~~r~il~~l~~v~~~~ 166 (266)
T 2of3_A 124 PMSQEEVSAFVPYLLLKTGEA-KDNMRTSVRDIVNVLSDVVGPL 166 (266)
T ss_dssp CCCHHHHHHHHHHHHHGGGCS-SHHHHHHHHHHHHHHHHHHCHH
T ss_pred cchHHHHHHHHHHHHHHhCCC-hHHHHHHHHHHHHHHHHHCCHH
Confidence 22223 5689999999774 4778888888888887766655
No 88
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=85.52 E-value=1.2 Score=44.52 Aligned_cols=114 Identities=11% Similarity=0.103 Sum_probs=71.5
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCC-----CCCCC--CCC--ccChHHHHHHhcCCCC--Cc--cHHHHHHHH
Q psy1198 126 AQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGN-----EDTLT--GFP--VKQVVPALITLLSMDH--NF--DMMNNACRA 192 (249)
Q Consensus 126 l~~Ll~~L~S~~D~~~QLeAL~eLrelLSmsn-----ep~I~--~fp--~~glVP~LV~iLs~e~--n~--dLQ~eAArA 192 (249)
++.++..|.+ +++..+..|...|..++.... ++.+. .+. ...+++.|+++|+... .+ +-...+..|
T Consensus 498 l~~l~~~L~d-~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~a 576 (960)
T 1wa5_C 498 MPILATFLQT-DEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRS 576 (960)
T ss_dssp HHHHHHHTTC-SCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHH
T ss_pred HHHHHHHhCC-CChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHHHHHH
Confidence 3455667776 478888899999988876421 11111 111 2356666777776531 01 123467778
Q ss_pred HHHHHhcCchhHHHHh-ccHHHHHHHhhc----CCChhHHHHHHHHHHHhhhh
Q psy1198 193 LTYMMEALPRSSAVVL-DAVPTFLEKLQV----IQCMDVAEQSLTALEMLSRR 240 (249)
Q Consensus 193 LTNIasgtp~qT~~VV-GAVPiL~~kLLs----i~yiDVAEQALwALenISgD 240 (249)
|..+++..++...-.+ ..+|.|+++|.. .++.++...++.+|+.|.+-
T Consensus 577 l~~vv~~~~~~~~p~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~~~ 629 (960)
T 1wa5_C 577 IFRVLQTSEDSIQPLFPQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNY 629 (960)
T ss_dssp HHHHHHHHTTTTGGGHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhc
Confidence 8888887776654444 666777665554 34667888899999998876
No 89
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=84.98 E-value=3.2 Score=35.71 Aligned_cols=111 Identities=10% Similarity=0.132 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCch
Q psy1198 123 ATKAQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEALPR 202 (249)
Q Consensus 123 ~~rl~~Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~ 202 (249)
...++++|+...+..-...-.....++|+++.... ......+..|.+-|++ .||.+|+.|-..|-.++.--..
T Consensus 6 ~~~~~~~i~kAT~~~~~~~dw~~ileicD~I~~~~------~~~k~a~ral~krl~~-~n~~v~l~aL~LLe~~vkNcG~ 78 (226)
T 3zyq_A 6 SGTFERLLDKATSQLLLETDWESILQICDLIRQGD------TQAKYAVNSIKKKVND-KNPHVALYALEVMESVVKNCGQ 78 (226)
T ss_dssp -CHHHHHHHHHTCTTCSSCCHHHHHHHHHHHHTTS------SCHHHHHHHHHHHHTC-SSHHHHHHHHHHHHHHHHHHCH
T ss_pred CchHHHHHHHHcCCCCCCcCHHHHHHHHHHHhCCC------ccHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHhcch
Confidence 35788899887653222334567789999987532 1235678888888874 6799999887766666665555
Q ss_pred hHHHHh---ccHHHHHHHhh-cCCChhHHHHHHHHHHHhhhhc
Q psy1198 203 SSAVVL---DAVPTFLEKLQ-VIQCMDVAEQSLTALEMLSRRH 241 (249)
Q Consensus 203 qT~~VV---GAVPiL~~kLL-si~yiDVAEQALwALenISgD~ 241 (249)
..+..| .-+..|.. |+ .-...+|.|.+|..|..-+...
T Consensus 79 ~f~~eias~~fl~~l~~-l~~~~~~~~Vk~kil~li~~W~~~f 120 (226)
T 3zyq_A 79 TVHDEVANKQTMEELKD-LLKRQVEVNVRNKILYLIQAWAHAF 120 (226)
T ss_dssp HHHHHHSSHHHHHHHHH-HHHHCCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHhhccHHHHHHHHH-HhccCCCHHHHHHHHHHHHHHHHHh
Confidence 444444 33334443 33 3356889999998888766543
No 90
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=84.97 E-value=0.57 Score=46.83 Aligned_cols=77 Identities=10% Similarity=0.130 Sum_probs=49.0
Q ss_pred cChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcC-------chh-HHHHhccHHHHHHHhhc---CC-----ChhHHHHH
Q psy1198 167 KQVVPALITLLSMDHNFDMMNNACRALTYMMEAL-------PRS-SAVVLDAVPTFLEKLQV---IQ-----CMDVAEQS 230 (249)
Q Consensus 167 ~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgt-------p~q-T~~VVGAVPiL~~kLLs---i~-----yiDVAEQA 230 (249)
..++|.+++.|.. +++.++..|||||.++++.. ++. ...+..-+|.++++|+. .. ..+..|.+
T Consensus 495 ~~~l~~l~~~L~d-~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l 573 (960)
T 1wa5_C 495 IELMPILATFLQT-DEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFL 573 (960)
T ss_dssp HHHHHHHHHHTTC-SCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHH
T ss_pred HHHHHHHHHHhCC-CChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHHH
Confidence 3577888888874 46889999999999999852 221 22233444544444442 21 12255889
Q ss_pred HHHHHHhhhhchhH
Q psy1198 231 LTALEMLSRRHSKA 244 (249)
Q Consensus 231 LwALenISgD~p~a 244 (249)
+.||+.|..-.+++
T Consensus 574 ~~al~~vv~~~~~~ 587 (960)
T 1wa5_C 574 MRSIFRVLQTSEDS 587 (960)
T ss_dssp HHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHh
Confidence 99998876654443
No 91
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=83.93 E-value=17 Score=35.62 Aligned_cols=104 Identities=16% Similarity=0.051 Sum_probs=70.3
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHh----c
Q psy1198 124 TKAQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHNFDMMNNACRALTYMME----A 199 (249)
Q Consensus 124 ~rl~~Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIas----g 199 (249)
..+.++++.+....|+..+-+|-+.|.++-.. .+..+.+..+|....++++++.|+-.|.|... .
T Consensus 24 ~~l~~~l~~l~~~~~~~~r~~A~~~L~~~~~~-----------p~~~~~~~~lL~~~~~~~vr~~aa~~L~~~i~~~w~~ 92 (963)
T 2x19_B 24 ENVEKALHQLYYDPNIENKNLAQKWLMQAQVS-----------PQAWHFSWQLLQPDKVPEIQYFGASALHIKISRYWSD 92 (963)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHS-----------TTHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHCGGG
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcC-----------HHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhCHHh
Confidence 45777777754335888777787777664321 25777888999877789999999999999875 4
Q ss_pred CchhHHHHh--ccHHHHHHHhhcCCChhHHHHHHHHHHHhhhh
Q psy1198 200 LPRSSAVVL--DAVPTFLEKLQVIQCMDVAEQSLTALEMLSRR 240 (249)
Q Consensus 200 tp~qT~~VV--GAVPiL~~kLLsi~yiDVAEQALwALenISgD 240 (249)
+|+.....+ -.+..+++ ..+ ...-|..|...+|-.|+..
T Consensus 93 l~~~~~~~ir~~ll~~l~~-~~~-~~~~ir~kl~~~la~i~~~ 133 (963)
T 2x19_B 93 IPTDQYESLKAQLFTQITR-FAS-GSKIVLTRLCVALASLALS 133 (963)
T ss_dssp SCGGGHHHHHHHHHHHHHH-TTT-SCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHH-HcC-CCHHHHHHHHHHHHHHHHH
Confidence 565555555 44444443 221 2356778888888777664
No 92
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=83.16 E-value=4.1 Score=36.69 Aligned_cols=77 Identities=13% Similarity=0.086 Sum_probs=44.1
Q ss_pred HHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchhHHHHh----ccHHHHHHHhh----------------------cCCC
Q psy1198 170 VPALITLLSMDHNFDMMNNACRALTYMMEALPRSSAVVL----DAVPTFLEKLQ----------------------VIQC 223 (249)
Q Consensus 170 VP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~qT~~VV----GAVPiL~~kLL----------------------si~y 223 (249)
+..+..++..+.+|..|+.++|+|.|+++-..-. ..+. -.++.+...+. +-..
T Consensus 149 ~~~l~~~~~~~~~p~n~ml~lR~l~NlF~~~~g~-~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~ 227 (304)
T 3ebb_A 149 SSHLINLLNPKGKPANQLLALRTFCNCFVGQAGQ-KLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHN 227 (304)
T ss_dssp HHHHHHTTCTTSCHHHHHHHHHHHHHGGGSHHHH-HHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHhcCCCCChHHHHHHHHHHHHccCCchhH-HHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCC
Confidence 3344455555556778999999999999854421 1111 22222222111 1123
Q ss_pred hhHHHHHHHHHHHhhhh--chhHHhh
Q psy1198 224 MDVAEQSLTALEMLSRR--HSKAILQ 247 (249)
Q Consensus 224 iDVAEQALwALenISgD--~p~aIL~ 247 (249)
.|-++|++.+++.|..+ .++++.|
T Consensus 228 ~~~~~~ll~~l~~il~~~~d~EalyR 253 (304)
T 3ebb_A 228 IEGKAQCLSLISTILEVVQDLEATFR 253 (304)
T ss_dssp HHHHHHHHHHHHHHHTTCCCHHHHHH
T ss_pred chHHHHHHHHHHHHHhccCCHHHHHH
Confidence 46778888888888764 4455554
No 93
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=82.38 E-value=5 Score=42.02 Aligned_cols=107 Identities=14% Similarity=0.183 Sum_probs=75.2
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchhHH
Q psy1198 126 AQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEALPRSSA 205 (249)
Q Consensus 126 l~~Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~qT~ 205 (249)
++.+++.+-+. +...+-.|-..+--+....+ | .-...++|.|++.|+....-+...-|..+|..|++-.|++..
T Consensus 97 ~~~~~~~~~dk-~~~v~~aa~~~~~~~~~~~~-~----~a~~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~~~ 170 (986)
T 2iw3_A 97 VPAICTNAGNK-DKEIQSVASETLISIVNAVN-P----VAIKALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQVA 170 (986)
T ss_dssp HHHHHHHTTCS-SHHHHHHHHHHHHHHHHHSC-G----GGHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHHHH
T ss_pred HHHHHHHhcCC-chHHHHHHHHHHHHHHHhCC-H----HHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHHHHH
Confidence 45566555543 44443333333333332221 1 223679999999997554567888999999999998899987
Q ss_pred HHh-ccHHHHHHHhhcCCChhHHHHHHHHHHHhhh
Q psy1198 206 VVL-DAVPTFLEKLQVIQCMDVAEQSLTALEMLSR 239 (249)
Q Consensus 206 ~VV-GAVPiL~~kLLsi~yiDVAEQALwALenISg 239 (249)
.-+ ..||++.+.+.+ ...+|+.|+..+|.++..
T Consensus 171 ~~~~~~~p~~~~~~~d-~k~~v~~~~~~~~~~~~~ 204 (986)
T 2iw3_A 171 LRMPELIPVLSETMWD-TKKEVKAAATAAMTKATE 204 (986)
T ss_dssp HHHHHHHHHHHHHTTC-SSHHHHHHHHHHHHHHGG
T ss_pred HhccchhcchHhhccc-CcHHHHHHHHHHHHHHHh
Confidence 777 999999995555 568999999999999875
No 94
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=81.12 E-value=1.7 Score=43.89 Aligned_cols=64 Identities=5% Similarity=-0.012 Sum_probs=48.8
Q ss_pred CccHHHHHHHHHHHHHhcCchhHHHHhccHHHHHHHhhcCCChhHHHHHHHHHHHhhhhchhHHh
Q psy1198 182 NFDMMNNACRALTYMMEALPRSSAVVLDAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRHSKAIL 246 (249)
Q Consensus 182 n~dLQ~eAArALTNIasgtp~qT~~VVGAVPiL~~kLLsi~yiDVAEQALwALenISgD~p~aIL 246 (249)
.|-++.-+||+|.-+++-+..+...+-.+++.|++.| ..+...|++.|.+||.+|+.++++.++
T Consensus 513 ~~~v~~~~~~~lgry~~~~~~~~~~l~~vl~~ll~~l-~~~~~~V~~~A~~al~~l~~~~~~~l~ 576 (1049)
T 3m1i_C 513 KAVVASDIMYVVGQYPRFLKAHWNFLRTVILKLFEFM-HETHEGVQDMACDTFIKIVQKCKYHFV 576 (1049)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHT-TSSCHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4556667899999887766555443338888888744 446789999999999999999887653
No 95
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=80.67 E-value=21 Score=31.78 Aligned_cols=139 Identities=12% Similarity=0.051 Sum_probs=85.9
Q ss_pred hHHHHhhCCCCCCCCCCcc---Ccc-chhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHH
Q psy1198 97 LSGVASSSSGPSHAPGAAL---DSE-SEDTATKAQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPA 172 (249)
Q Consensus 97 ~q~Llkrr~l~~~~~gs~~---~~~-~s~~~~rl~~Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~ 172 (249)
...|+++.-.-.|-|.-.. +.. .+.....+..+...|..++-...++-|+.-|.++ . +...++|.
T Consensus 39 ~~~~~~~~~~~~~gf~~~~~~a~~~~~~~~~~~~~~la~~L~~~~~deVR~~Av~lLg~~-~----------~~~~~L~~ 107 (240)
T 3l9t_A 39 VARLEKDFSLIEHGFKEEEQRALTDYKSNDGEYIKKLAFLAYQSDVYQVRMYAVFLFGYL-S----------KDKEILIF 107 (240)
T ss_dssp HHHHHHHHTC-----CHHHHHHHHHHHHSCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHT-T----------TSHHHHHH
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhCCHHHHHHHHHHHHhCcchHHHHHHHHHHHhc-c----------CcHHHHHH
Confidence 3456666554455554221 111 1223456677888887643345566676644444 1 12457777
Q ss_pred HHHhcCCCCCccHHHHHHHHHHHHHh-cCchhHHHH---------------h--c----------------cHHHHHHHh
Q psy1198 173 LITLLSMDHNFDMMNNACRALTYMME-ALPRSSAVV---------------L--D----------------AVPTFLEKL 218 (249)
Q Consensus 173 LV~iLs~e~n~dLQ~eAArALTNIas-gtp~qT~~V---------------V--G----------------AVPiL~~kL 218 (249)
+...+..+++-.++..+|.++.+++. ..|+.+-.+ + + ++|+|- .|
T Consensus 108 ir~~va~D~~WrVre~lA~a~~~~~~~~~pe~~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~~~~k~dp~~ll~iL~-~L 186 (240)
T 3l9t_A 108 MRDEVSKDNNWRVQEVLAKAFDEFCKKIEYKKALPIIDEWLKSSNLHTRRAATEGLRIWTNRPYFKENPNEAIRRIA-DL 186 (240)
T ss_dssp HHHTGGGCSCHHHHHHHHHHHHHHHHHHCTTTTHHHHHHHHHCSSHHHHHHHHHHTCSGGGSTTTTTCHHHHHHHHH-TT
T ss_pred HHHHhCCCCCccHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCHHHHHHHHHhhHHHhccchhhcCHHHHHHHHH-Hh
Confidence 77766667789999999999999996 667643211 1 2 355555 47
Q ss_pred hcCCChhHHHHHHHHHHHhhhhchhHHhh
Q psy1198 219 QVIQCMDVAEQSLTALEMLSRRHSKAILQ 247 (249)
Q Consensus 219 Lsi~yiDVAEQALwALenISgD~p~aIL~ 247 (249)
..-+..-|.--.=|+|-.||+++|.-|.+
T Consensus 187 ~~D~s~yVrKSVan~LrD~SK~~Pd~V~~ 215 (240)
T 3l9t_A 187 KEDVSEYVRKSVGNALRDISKKFPDLVKI 215 (240)
T ss_dssp TTCSCHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cCChHHHHHHHHHHHHHHHhhhCHHHHHH
Confidence 77777778888889999999999987754
No 96
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=80.13 E-value=2.2 Score=39.52 Aligned_cols=66 Identities=12% Similarity=0.106 Sum_probs=46.9
Q ss_pred CccHHHHHHHHHHHHHhcCchhHHHHh---ccHHHHHHHhhcCCChhHHHHHHHHHHHhhhh----c-hhHHhhcC
Q psy1198 182 NFDMMNNACRALTYMMEALPRSSAVVL---DAVPTFLEKLQVIQCMDVAEQSLTALEMLSRR----H-SKAILQAF 249 (249)
Q Consensus 182 n~dLQ~eAArALTNIasgtp~qT~~VV---GAVPiL~~kLLsi~yiDVAEQALwALenISgD----~-p~aIL~a~ 249 (249)
+.++|.++.+||-.|+.-... ...|+ .+|..|+. .+..+++.++-+++..|.-|+-- + -..||+||
T Consensus 71 d~~~~~~~l~CLkalmN~~~G-l~~vl~~~~~i~~l~~-sL~s~~~~~r~~vleLL~alc~~~~~~G~~~~VL~Al 144 (386)
T 2bnx_A 71 DSRNQHEIIRCLKAFMNNKFG-IKTMLETEEGILLLVR-AMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAM 144 (386)
T ss_dssp HHHHHHHHHHHHHHHTSSHHH-HHHHHHSSSHHHHHHH-TCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCHHH-HHHHHcCcHHHHHHHH-HhCCCCchHHHHHHHHHHHHHcCCCCCChHHHHHHHH
Confidence 568899999999999874332 33344 78888885 77888899988888777655542 3 44576664
No 97
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=79.95 E-value=2 Score=38.73 Aligned_cols=105 Identities=20% Similarity=0.210 Sum_probs=68.5
Q ss_pred HHHhcCCCHHHHHHHHHHHHHHhhcCCCCC-CCCCCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCch-----hH
Q psy1198 131 VSLQAIGDEDQQLQAVVEMCQMLVMGNEDT-LTGFPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEALPR-----SS 204 (249)
Q Consensus 131 ~~L~S~~D~~~QLeAL~eLrelLSmsnep~-I~~fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~-----qT 204 (249)
..+.+...+..+|.+++-+|++++-..-.. +.. ..+.+++.+..++.. ++..+|.-+|..+.|++-..-. +.
T Consensus 154 ~~~~~~~~p~n~ml~lR~l~NlF~~~~g~~~l~~-~~~~il~~~~~~~~~-~nknl~iA~ATl~~NlAv~~~~~~~~~~~ 231 (304)
T 3ebb_A 154 NLLNPKGKPANQLLALRTFCNCFVGQAGQKLMMS-QRESLMSHAIELKSG-SNKNIHIALATLALNYSVCFHKDHNIEGK 231 (304)
T ss_dssp HTTCTTSCHHHHHHHHHHHHHGGGSHHHHHHHHH-THHHHHHHHHGGGSS-CCHHHHHHHHHHHHHHHHHHHHSCCHHHH
T ss_pred HhcCCCCChHHHHHHHHHHHHccCCchhHHHHHH-HHHHHHHHHHHHhcC-CChhHHHHHHHHHHHHHHHHhhcCCchHH
Confidence 334443467889999999999886532100 001 124577777777654 5789999999999999986432 11
Q ss_pred HHHhccHHHHHHHhhcCCChhHHHHHHHHHHHhhhh
Q psy1198 205 AVVLDAVPTFLEKLQVIQCMDVAEQSLTALEMLSRR 240 (249)
Q Consensus 205 ~~VVGAVPiL~~kLLsi~yiDVAEQALwALenISgD 240 (249)
..+..++-.++ ...++.|..-.+|-|||++.-.
T Consensus 232 ~~ll~~l~~il---~~~~d~EalyR~LvALGtL~~~ 264 (304)
T 3ebb_A 232 AQCLSLISTIL---EVVQDLEATFRLLVALGTLISD 264 (304)
T ss_dssp HHHHHHHHHHH---TTCCCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHH---hccCCHHHHHHHHHHHHHHHhC
Confidence 11113333333 3556889999999999998854
No 98
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=75.54 E-value=13 Score=33.27 Aligned_cols=75 Identities=12% Similarity=0.226 Sum_probs=56.4
Q ss_pred cChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchhHHHHhccHHHHHHHhhcCCChhHHHHHHHHHHHhhhhchhHH
Q psy1198 167 KQVVPALITLLSMDHNFDMMNNACRALTYMMEALPRSSAVVLDAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRHSKAI 245 (249)
Q Consensus 167 ~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~qT~~VVGAVPiL~~kLLsi~yiDVAEQALwALenISgD~p~aI 245 (249)
..|+..+++.|+. +--.+|-.|-+.|.+|+...|+-.. .++..|.-.|..++.|++.-..-.++|-+++..|.-|
T Consensus 31 ~~~l~~lI~~LDD-DlwtV~kNAl~vi~~i~~~~~el~e---pl~~kL~vm~~ksEaIpltqeIa~a~G~la~i~Pe~v 105 (253)
T 2db0_A 31 ESVLKKLIELLDD-DLWTVVKNAISIIMVIAKTREDLYE---PMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPELV 105 (253)
T ss_dssp HHHHHHHHHHTTC-SCHHHHHHHHHHHHHHHTTCGGGHH---HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHHHHHhcc-HHHHHHHhHHHHHHHHHHHhHHHHH---HHHHHHHHHHhhcccCchHHHHHHHHhHHHHhCHHHH
Confidence 4788899999964 3356799999999999998887554 3444455444567889987777789999999888754
No 99
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=74.63 E-value=1.8 Score=44.85 Aligned_cols=77 Identities=9% Similarity=0.080 Sum_probs=48.2
Q ss_pred ChHHHHHHhcCC----CCCccHHHHHHHHHHHHHhcCchhHHHHhccHHHHHHHhhcCCChhHHHHHHHHHHHhhhhchh
Q psy1198 168 QVVPALITLLSM----DHNFDMMNNACRALTYMMEALPRSSAVVLDAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRHSK 243 (249)
Q Consensus 168 glVP~LV~iLs~----e~n~dLQ~eAArALTNIasgtp~qT~~VVGAVPiL~~kLLsi~yiDVAEQALwALenISgD~p~ 243 (249)
.++|.|+.++.+ ++.+.+.--+||+|-.+.+-+......+-..+..|.+.|.+ ++..|++.|.|||-+|+.++.+
T Consensus 495 ~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~~L~~vl~~L~~~l~~-~~~~v~~~A~~al~~l~~~c~~ 573 (1023)
T 4hat_C 495 TVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLRTVILKLFEFMHE-THEGVQDMACDTFIKIVQKCKY 573 (1023)
T ss_dssp HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHHHHHHHHHHHHHHTTC-SCHHHHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhc-CCHHHHHHHHHHHHHHHHHHHH
Confidence 445555555542 11122333567888777775544444322556666654433 4578999999999999999876
Q ss_pred HH
Q psy1198 244 AI 245 (249)
Q Consensus 244 aI 245 (249)
.+
T Consensus 574 ~l 575 (1023)
T 4hat_C 574 HF 575 (1023)
T ss_dssp HH
T ss_pred Hh
Confidence 65
No 100
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=73.91 E-value=14 Score=29.97 Aligned_cols=111 Identities=9% Similarity=-0.016 Sum_probs=72.1
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchh
Q psy1198 124 TKAQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEALPRS 203 (249)
Q Consensus 124 ~rl~~Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~q 203 (249)
..+.++|+...+..-+..-.....++|+++....+ .....+..|.+-|++ .||.+|+.|-..|-.++.--...
T Consensus 10 ~~~~~~IekATs~~l~~~dw~~ileicD~I~~~~~------~pk~a~ral~krl~~-~n~~v~l~AL~LLe~cvkNCG~~ 82 (149)
T 3g2s_A 10 ETLEARINRATNPLNKELDWASINGFCEQLNEDFE------GPPLATRLLAHKIQS-PQEWEAIQALTVLETCMKSCGKR 82 (149)
T ss_dssp CCHHHHHHHHSCTTCSSCCHHHHHHHHHHGGGSSS------HHHHHHHHHHHHHTC-SSHHHHHHHHHHHHHHHHHCCHH
T ss_pred CcHHHHHHHHcCCCCCCcCHHHHHHHHHHHHCCCC------cHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHhcCHH
Confidence 34677777665432223346677899998866422 234567778777764 57999988877666666655555
Q ss_pred HHHHh---ccHHHHHHHhhc------CCChhHHHHHHHHHHHhhhhch
Q psy1198 204 SAVVL---DAVPTFLEKLQV------IQCMDVAEQSLTALEMLSRRHS 242 (249)
Q Consensus 204 T~~VV---GAVPiL~~kLLs------i~yiDVAEQALwALenISgD~p 242 (249)
.+.-| .-+.-|+. |+. ....+|.+.++..|..-+...+
T Consensus 83 fh~eias~~Fl~eL~k-l~~~k~~~~~~~~~Vk~kil~li~~W~~~f~ 129 (149)
T 3g2s_A 83 FHDEVGKFRFLNELIK-VVSPKYLGSRTSEKVKNKILELLYSWTVGLP 129 (149)
T ss_dssp HHHHHTSHHHHHHHHH-HHCTTTTGGGSCHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHhhHHHHHHHHH-HHcccccCCCCCHHHHHHHHHHHHHHHHHhC
Confidence 55545 44555563 543 3568999999999888765543
No 101
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=73.84 E-value=4.6 Score=39.91 Aligned_cols=86 Identities=12% Similarity=0.040 Sum_probs=55.3
Q ss_pred HHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchhHHHHhccHHHHHHHh---h
Q psy1198 143 LQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEALPRSSAVVLDAVPTFLEKL---Q 219 (249)
Q Consensus 143 LeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~qT~~VVGAVPiL~~kL---L 219 (249)
+..+..+++.+.. ++ ..+ ..++|.|++.|+ +.++-.||++|.++++...... ..-+|.|+++| +
T Consensus 527 ~~~l~~~~~~l~~--~~--~~l--~~vl~~l~~~l~----~~v~~~A~~al~~l~~~~~~~l---~p~~~~ll~~l~~~l 593 (971)
T 2x1g_F 527 LETMGSYCNWLME--NP--AYI--PPAINLLVRGLN----SSMSAQATLGLKELCRDCQLQL---KPYADPLLNACHASL 593 (971)
T ss_dssp HHHHHHTHHHHC--------CH--HHHHHHHHHHHH----SSCHHHHHHHHHHHHHHCHHHH---HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc--CH--HHH--HHHHHHHHHHhC----hHHHHHHHHHHHHHHHHHHHhc---cccHHHHHHHHHHHH
Confidence 3444555555542 22 122 367888888882 8899999999999998765442 23444444433 3
Q ss_pred cCC--ChhHHHHHHHHHHHhhhhc
Q psy1198 220 VIQ--CMDVAEQSLTALEMLSRRH 241 (249)
Q Consensus 220 si~--yiDVAEQALwALenISgD~ 241 (249)
+.+ ..+..+.++.|+..|+.-.
T Consensus 594 ~~~~~~~~~~~~~~~ai~~i~~~~ 617 (971)
T 2x1g_F 594 NTGRMKNSDSVRLMFSIGKLMSLL 617 (971)
T ss_dssp HSTTSCHHHHHHHHHHHHHHHHTS
T ss_pred cCCCCChHHHHHHHHHHHHHHHhC
Confidence 332 3689999999999998643
No 102
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=72.58 E-value=16 Score=32.55 Aligned_cols=79 Identities=13% Similarity=0.131 Sum_probs=59.4
Q ss_pred CCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchhHHHHhccH---HHHHHHhhcCCChhHHHHHHHHHHHhhhh
Q psy1198 164 FPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEALPRSSAVVLDAV---PTFLEKLQVIQCMDVAEQSLTALEMLSRR 240 (249)
Q Consensus 164 fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~qT~~VVGAV---PiL~~kLLsi~yiDVAEQALwALenISgD 240 (249)
+|...+++.+++-+++ .|...-.+++.+|.++.+-.--+ -..++ |.+++ |++-.+.+|++.|+.||..+=.-
T Consensus 163 ~~~~~v~~~l~~g~ks-KN~R~R~e~l~~l~~li~~~G~~---~~~~l~~~~~ia~-ll~D~d~~VR~aAl~~lve~y~~ 237 (266)
T 2of3_A 163 VGPLKMTPMLLDALKS-KNARQRSECLLVIEYYITNAGIS---PLKSLSVEKTVAP-FVGDKDVNVRNAAINVLVACFKF 237 (266)
T ss_dssp HCHHHHHHHHHHGGGC-SCHHHHHHHHHHHHHHHHHHCSG---GGGGGCHHHHHGG-GGGCSSHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcc-CCHHHHHHHHHHHHHHHHhcCCC---ccccccchHHHHH-HHcCCCHHHHHHHHHHHHHHHHH
Confidence 4567899999999975 46888889888888887754333 12567 98995 88888999999999999876555
Q ss_pred chhHHhh
Q psy1198 241 HSKAILQ 247 (249)
Q Consensus 241 ~p~aIL~ 247 (249)
-++.|.+
T Consensus 238 ~Gd~v~k 244 (266)
T 2of3_A 238 EGDQMWK 244 (266)
T ss_dssp HTTHHHH
T ss_pred hhHHHHH
Confidence 5555543
No 103
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=72.33 E-value=11 Score=31.15 Aligned_cols=111 Identities=10% Similarity=0.028 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCch
Q psy1198 123 ATKAQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEALPR 202 (249)
Q Consensus 123 ~~rl~~Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~ 202 (249)
.+.+.++|+...+..-...-.....++|+++....+ .....+..|.+-|++ .|+.+|+.|-..|=.++.-...
T Consensus 11 ~s~~~~~IekATs~~l~~~Dw~~ileicD~I~~~~~------~~k~A~ral~krl~~-~n~~vql~AL~LLd~~vkNCG~ 83 (171)
T 1juq_A 11 GESLESWLNKATNPSNRQEDWEYIIGFCDQINKELE------GPQIAVRLLAHKIQS-PQEWEALQALTVLEACMKNCGR 83 (171)
T ss_dssp -CCHHHHHHHHTCTTCSSCCHHHHHHHHHHHHHSTT------HHHHHHHHHHHHHTC-SSHHHHHHHHHHHHHHHHHSHH
T ss_pred CCcHHHHHHHHcCCCCCCcCHHHHHHHHHHHHcCCc------cHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHcCH
Confidence 455778887776532223335567799999877422 234567777777775 4799999888777777766555
Q ss_pred hHHHHh---ccHHHHHHHhhc------CCChhHHHHHHHHHHHhhhhc
Q psy1198 203 SSAVVL---DAVPTFLEKLQV------IQCMDVAEQSLTALEMLSRRH 241 (249)
Q Consensus 203 qT~~VV---GAVPiL~~kLLs------i~yiDVAEQALwALenISgD~ 241 (249)
..+.-| .-+.-|+. |.. ..+.+|.+.+|..|..-+...
T Consensus 84 ~Fh~evas~~Fl~eL~k-l~~~k~~~~~~~~~Vk~kil~li~~W~~~f 130 (171)
T 1juq_A 84 RFHNEVGKFRFLNELIK-VVSPKYLGDRVSEKVKTKVIELLYSWTMAL 130 (171)
T ss_dssp HHHHHHTSHHHHHHHHH-HHCCCCCCTTSCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHhhHHHHHHHHH-HhccccCCCCCCHHHHHHHHHHHHHHHHHc
Confidence 555545 44566664 544 235899999999888766543
No 104
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=72.32 E-value=41 Score=30.85 Aligned_cols=102 Identities=11% Similarity=0.051 Sum_probs=62.8
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchhHHH
Q psy1198 127 QQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEALPRSSAV 206 (249)
Q Consensus 127 ~~Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~qT~~ 206 (249)
..|.+.+++ .+|...=-|++-||++..-+ + ...+.+.+.++|.+ .+|-+---|+-|.++++...|+...
T Consensus 107 Nsl~kDl~~-~N~~iR~lALRtL~~I~~~~-------m-~~~l~~~lk~~L~d-~~pyVRk~A~l~~~kL~~~~pe~v~- 175 (355)
T 3tjz_B 107 SSLTKDMTG-KEDSYRGPAVRALCQITDST-------M-LQAIERYMKQAIVD-KVPSVSSSALVSSLHLLKCSFDVVK- 175 (355)
T ss_dssp HHHHHHHHS-SCHHHHHHHHHHHHHHCCTT-------T-HHHHHHHHHHHHTC-SSHHHHHHHHHHHHHHTTTCHHHHH-
T ss_pred HHHHhhcCC-CcHhHHHHHHHHHhcCCCHH-------H-HHHHHHHHHHHcCC-CCHHHHHHHHHHHHHHhccCHHHHH-
Confidence 444445565 35655556777777764321 2 34567777777764 4688888888888888887777433
Q ss_pred HhccHHHHHHHhhcCCChhHHHHHHHHHHHhhhhch
Q psy1198 207 VLDAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRHS 242 (249)
Q Consensus 207 VVGAVPiL~~kLLsi~yiDVAEQALwALenISgD~p 242 (249)
.-+..+.+ +++..+.-|.=.|+.+|-.|....+
T Consensus 176 --~~~~~l~~-ll~d~n~~V~~~Al~lL~ei~~~d~ 208 (355)
T 3tjz_B 176 --RWVNEAQE-AASSDNIMVQYHALGLLYHVRKNDR 208 (355)
T ss_dssp --TTHHHHHH-HTTCSSHHHHHHHHHHHHHHHTTCH
T ss_pred --HHHHHHHH-HhcCCCccHHHHHHHHHHHHHhhch
Confidence 45555555 4444444455577777777765443
No 105
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=72.29 E-value=18 Score=30.53 Aligned_cols=107 Identities=9% Similarity=0.052 Sum_probs=68.5
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchhHH
Q psy1198 126 AQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEALPRSSA 205 (249)
Q Consensus 126 l~~Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~qT~ 205 (249)
+.++|+...+..-+..-.....++|+++....+ .....+..|.+-|+. .||.+|+.|-..|-.++.---...+
T Consensus 6 ~~~~ie~AT~~~~~~~dw~~~leicd~i~~~~~------~~k~a~r~l~krl~~-~n~~~~l~aL~Lle~~vkNcG~~f~ 78 (220)
T 1dvp_A 6 FCKNLENATSHLRLEPDWPSILLICDEINQKDV------TPKNAFAAIKKKMNS-PNPHSSCYSLLVLESIVKNCGAPVH 78 (220)
T ss_dssp HHHHHHHHHCTTCSSCCHHHHHHHHHHHHTTSS------CHHHHHHHHHHHHTC-SSHHHHHHHHHHHHHHHHHSHHHHH
T ss_pred HHHHHHHHcCCCCCCcCHHHHHHHHHhhcCCCc------CHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHhccCHHHH
Confidence 777777765522222234556889999975322 235677788887875 5799999988777777765544444
Q ss_pred HHh---ccHHHHHHHhhcCCChhHHHHHHHHHHHhhh
Q psy1198 206 VVL---DAVPTFLEKLQVIQCMDVAEQSLTALEMLSR 239 (249)
Q Consensus 206 ~VV---GAVPiL~~kLLsi~yiDVAEQALwALenISg 239 (249)
.-| .-+.-|+..+..-.+.+|.+.++..+..-+.
T Consensus 79 ~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 115 (220)
T 1dvp_A 79 EEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWAY 115 (220)
T ss_dssp HHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Confidence 444 3344444322234578999999977776654
No 106
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=70.98 E-value=4.7 Score=39.18 Aligned_cols=72 Identities=21% Similarity=0.214 Sum_probs=58.7
Q ss_pred ChHHHHHHhcCC---------CCCccHHHHHHHHHHHHHhcCchhHHHHh--ccHHHHHHHhhcCCChhHHHHHHHHHHH
Q psy1198 168 QVVPALITLLSM---------DHNFDMMNNACRALTYMMEALPRSSAVVL--DAVPTFLEKLQVIQCMDVAEQSLTALEM 236 (249)
Q Consensus 168 glVP~LV~iLs~---------e~n~dLQ~eAArALTNIasgtp~qT~~VV--GAVPiL~~kLLsi~yiDVAEQALwALen 236 (249)
.++..|+++|+. +.+|...-.||-=|..++.-.|+--..+- |+=...- +|++.++.||+.+||.|+.+
T Consensus 395 ~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM-~Lm~h~d~~Vr~~AL~avQk 473 (480)
T 1ho8_A 395 KIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIM-ELLNHSDSRVKYEALKATQA 473 (480)
T ss_dssp HHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHH-HHTSCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhccccccccCCCcceEEeecccHHHHHHHCcchhHHHHHcCcHHHHH-HHhcCCCHHHHHHHHHHHHH
Confidence 688999999973 23688888999999999999997766444 7766666 48899999999999999998
Q ss_pred hhhh
Q psy1198 237 LSRR 240 (249)
Q Consensus 237 ISgD 240 (249)
|-..
T Consensus 474 lm~~ 477 (480)
T 1ho8_A 474 IIGY 477 (480)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 7543
No 107
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=68.43 E-value=12 Score=29.75 Aligned_cols=107 Identities=7% Similarity=0.038 Sum_probs=62.6
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchhHH
Q psy1198 126 AQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEALPRSSA 205 (249)
Q Consensus 126 l~~Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~qT~ 205 (249)
+.++|+...+..-...-.....++|+++....+ .....+..|.+-|++ .||..|+.|-..|-.++.---..-+
T Consensus 6 ~d~~iekAT~~~l~~~dw~~ileicD~I~~~~~------~~k~a~rai~Krl~~-~n~~~ql~AL~LLe~~vkNcG~~f~ 78 (140)
T 3ldz_A 6 FDQDVEKATSEMNTAEDWGLILDICDKVGQSRT------GPKDCLRSIMRRVNH-KDPHVAMQALTLLGACVSNCGKIFH 78 (140)
T ss_dssp THHHHHHHTCTTSSSCCHHHHHHHHHHHTTSTT------HHHHHHHHHHHHHTC-SSHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred HHHHHHHHcCCCCCCcCHHHHHHHHHHHHCCCc------CHHHHHHHHHHHHcC-CChHHHHHHHHHHHHHHHhcCHHHH
Confidence 556666654421122235567888888765321 234667777777875 4788888875544444443333334
Q ss_pred HHh---ccHHHHHHHhhcCCChhHHHHHHHHHHHhhhh
Q psy1198 206 VVL---DAVPTFLEKLQVIQCMDVAEQSLTALEMLSRR 240 (249)
Q Consensus 206 ~VV---GAVPiL~~kLLsi~yiDVAEQALwALenISgD 240 (249)
..| .-+.-|+ +|+.-.+.+|.+.++..+..-+..
T Consensus 79 ~evas~~Fl~el~-~l~~~~~~~Vk~kil~li~~W~~~ 115 (140)
T 3ldz_A 79 LEVCSRDFASEVS-NVLNKGHPKVCEKLKALMVEWTDE 115 (140)
T ss_dssp HHHSSHHHHHHHH-HHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHH-HHhccCCHHHHHHHHHHHHHHHHH
Confidence 333 3333344 344446789999999888776543
No 108
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=67.52 E-value=11 Score=39.62 Aligned_cols=115 Identities=13% Similarity=0.156 Sum_probs=78.7
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchhHH
Q psy1198 126 AQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEALPRSSA 205 (249)
Q Consensus 126 l~~Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~qT~ 205 (249)
+..+...+.+..++...+.++..||+.... .++.+-+- -.++|.+...+.. ....++-.|--++..|+..+|....
T Consensus 56 ~~~~~~~~~~k~~~~~a~~~~~~~~~~~~~--~~~~e~~~-~~~~~~~~~~~~d-k~~~v~~aa~~~~~~~~~~~~~~a~ 131 (986)
T 2iw3_A 56 FGELAKGIKDKKTAANAMQAVAHIANQSNL--SPSVEPYI-VQLVPAICTNAGN-KDKEIQSVASETLISIVNAVNPVAI 131 (986)
T ss_dssp HHHHHHHHTSHHHHHHHHHHHHHHTCTTTC--CTTTHHHH-HTTHHHHHHHTTC-SSHHHHHHHHHHHHHHHHHSCGGGH
T ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHhcCC--CCCcccch-HHHHHHHHHHhcC-CchHHHHHHHHHHHHHHHhCCHHHH
Confidence 445555565432445556677777665533 33433221 2577888887763 4567888888888888888876543
Q ss_pred HHhccHHHHHHHhhcCCChhHHHHHHHHHHHhhhhchhHHh
Q psy1198 206 VVLDAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRHSKAIL 246 (249)
Q Consensus 206 ~VVGAVPiL~~kLLsi~yiDVAEQALwALenISgD~p~aIL 246 (249)
...+|.|.+-|.+...-....-||++|++++.+.|..+-
T Consensus 132 --~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~~~ 170 (986)
T 2iw3_A 132 --KALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQVA 170 (986)
T ss_dssp --HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHHHH
T ss_pred --HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHHHHH
Confidence 256888888776666678899999999999999987654
No 109
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=66.53 E-value=22 Score=28.85 Aligned_cols=110 Identities=14% Similarity=0.127 Sum_probs=69.8
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchh
Q psy1198 124 TKAQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEALPRS 203 (249)
Q Consensus 124 ~rl~~Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~q 203 (249)
..+.++|+...+..-+..-.....++|+++....+ .....+..|.+-|++..|+.+|+.|-..|=.++.-.-..
T Consensus 15 s~~~~~IekATs~~l~~~Dw~~~leicD~I~~~~~------~~k~a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~ 88 (157)
T 1elk_A 15 SPVGQRIEKATDGSLQSEDWALNMEICDIINETEE------GPKDALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHR 88 (157)
T ss_dssp SHHHHHHHHHTCTTCSSCCHHHHHHHHHHHHHSSS------HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHH
T ss_pred cHHHHHHHHHcCCCCCCcCHHHHHHHHHHHhCCCc------cHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHH
Confidence 35777777765522222235566789998866321 235678888888876567899988777666666655455
Q ss_pred HHHHh---ccHHH-HHHHhhc---CCChhHHHHHHHHHHHhhhh
Q psy1198 204 SAVVL---DAVPT-FLEKLQV---IQCMDVAEQSLTALEMLSRR 240 (249)
Q Consensus 204 T~~VV---GAVPi-L~~kLLs---i~yiDVAEQALwALenISgD 240 (249)
.+..| .-+.- |+. ++. -+..+|.+.++..|..-+..
T Consensus 89 fh~eva~~~fl~e~Lvk-~~~~k~~~~~~Vk~kil~li~~W~~~ 131 (157)
T 1elk_A 89 FHVLVASQDFVESVLVR-TILPKNNPPTIVHDKVLNLIQSWADA 131 (157)
T ss_dssp HHHHHTSHHHHHHHTHH-HHSTTTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHH-HhccCCCCcHHHHHHHHHHHHHHHHH
Confidence 55544 33443 453 442 23468999999888876654
No 110
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=63.27 E-value=28 Score=28.48 Aligned_cols=109 Identities=9% Similarity=0.029 Sum_probs=65.4
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchhH
Q psy1198 125 KAQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEALPRSS 204 (249)
Q Consensus 125 rl~~Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~qT 204 (249)
.+.++|+...+......-.....++|+++....+ .....+..|.+-|++ .||.+|+.|-..|=.++.-.....
T Consensus 15 p~~~~IekATs~~~~~~Dw~~~leicD~I~~~~~------~~keA~ral~krl~~-~n~~vql~AL~LLd~~vkNcG~~F 87 (163)
T 1x5b_A 15 PFEQDVEKATNEYNTTEDWSLIMDICDKVGSTPN------GAKDCLKAIMKRVNH-KVPHVALQALTLLGACVANCGKIF 87 (163)
T ss_dssp TTHHHHHHHTCTTCSSCCHHHHHHHHHHHHHSSS------HHHHHHHHHHHHHTC-SSHHHHHHHHHHHHHHHHHTCHHH
T ss_pred hHHHHHHHHcCCCCCCcCHHHHHHHHHHHhCCCc------cHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHHhhHHH
Confidence 3557776665422222234456788888866321 234567777777765 478899887666656655544445
Q ss_pred HHHh---ccHHHHHHHhhcC-CChhHHHHHHHHHHHhhhhc
Q psy1198 205 AVVL---DAVPTFLEKLQVI-QCMDVAEQSLTALEMLSRRH 241 (249)
Q Consensus 205 ~~VV---GAVPiL~~kLLsi-~yiDVAEQALwALenISgD~ 241 (249)
+.-| .-+.-|+. |+.- .+.+|.+.++..|..-+...
T Consensus 88 h~evas~~Fl~el~~-l~~~~~~~~Vk~kil~li~~W~~~f 127 (163)
T 1x5b_A 88 HLEVCSRDFATEVRA-VIKNKAHPKVCEKLKSLMVEWSEEF 127 (163)
T ss_dssp HHHHTSHHHHHHHHH-HHHTTCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHhhHHHHHHHHH-HHccCCCHHHHHHHHHHHHHHHHHh
Confidence 5444 34444553 4432 56799999998888766543
No 111
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=62.68 E-value=6.1 Score=38.74 Aligned_cols=109 Identities=14% Similarity=0.139 Sum_probs=72.8
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCC--ccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcC
Q psy1198 123 ATKAQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFP--VKQVVPALITLLSMDHNFDMMNNACRALTYMMEAL 200 (249)
Q Consensus 123 ~~rl~~Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp--~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgt 200 (249)
...++.|+++.+.+ +...+| |-|-+.+.... || .+.-+-+++.+... ++.++...|.|.|-.||-.
T Consensus 28 ~~~y~~Il~~~kg~-~k~K~L-aaQ~I~kffk~--------FP~l~~~Ai~a~lDLcED-ed~~IR~qaik~Lp~~ck~- 95 (507)
T 3u0r_A 28 KDAYQVILDGVKGG-TKEKRL-AAQFIPKFFKH--------FPELADSAINAQLDLCED-EDVSIRRQAIKELPQFATG- 95 (507)
T ss_dssp HHHHHHHHHGGGSC-HHHHHH-HHHHHHHHGGG--------CGGGHHHHHHHHHHHHTC-SSHHHHHHHHHHGGGGCCT-
T ss_pred HHHHHHHHHhcCCC-HHHHHH-HHHHHHHHHhh--------ChhhHHHHHHHHHHHHhc-ccHHHHHHHHHhhHHHhhh-
Confidence 34577788877752 333344 55666665544 44 23556666676654 3577888888888888765
Q ss_pred chhHHHHhccHHHHHHHhhcCCChhHHHHHHHHHHHhhhhchhHHhhc
Q psy1198 201 PRSSAVVLDAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRHSKAILQA 248 (249)
Q Consensus 201 p~qT~~VVGAVPiL~~kLLsi~yiDVAEQALwALenISgD~p~aIL~a 248 (249)
+.+. -.+-+|+| ||..+...-.+++=++|=-|-+-.|+..|.+
T Consensus 96 -~~i~---kiaDvL~Q-lLqtdd~~E~~~V~~sL~sllk~Dpk~tl~~ 138 (507)
T 3u0r_A 96 -ENLP---RVADILTQ-LLQTDDSAEFNLVNNALLSIFKMDAKGTLGG 138 (507)
T ss_dssp -TCHH---HHHHHHHH-HTTCCCHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred -hhhh---hHHHHHHH-HHhccchHHHHHHHHHHHHHHhcChHHHHHH
Confidence 4433 45567887 7777887788888888888888888877654
No 112
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=62.25 E-value=3.2 Score=42.68 Aligned_cols=76 Identities=9% Similarity=-0.019 Sum_probs=58.5
Q ss_pred ChHHHHHHhcC----CCCCccHHHHHHHHHHHHHhcCchhHHHHhccHHHHHH--HhhcCCChhHHHHHHHHHHHhhhhc
Q psy1198 168 QVVPALITLLS----MDHNFDMMNNACRALTYMMEALPRSSAVVLDAVPTFLE--KLQVIQCMDVAEQSLTALEMLSRRH 241 (249)
Q Consensus 168 glVP~LV~iLs----~e~n~dLQ~eAArALTNIasgtp~qT~~VVGAVPiL~~--kLLsi~yiDVAEQALwALenISgD~ 241 (249)
.+++-|+.+|+ .+.+|.+++.+||+|--+.+-+..+...+-.+++.|++ .|. .+...|++.|..+|-++..++
T Consensus 490 ~l~~ll~~ll~s~i~~~~hp~V~~~~~~~l~rys~~~~~~~~~l~~~L~~ll~~~gl~-~~~~~V~~~a~~af~~f~~~~ 568 (980)
T 3ibv_A 490 VLSQILALVTTSQVCRHPHPLVQLLYMEILVRYASFFDYESAAIPALIEYFVGPRGIH-NTNERVRPRAWYLFYRFVKSI 568 (980)
T ss_dssp HHHHHHHHHHHSSTTTCCCHHHHHHHHHHHHHTGGGGGTCCTTHHHHHHHHTSTTTTT-CCCTTTHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHhcccccc-CCChhHHHHHHHHHHHHHHHh
Confidence 36666777664 24579999999999999999887766544377777775 444 366889999999999999988
Q ss_pred hhH
Q psy1198 242 SKA 244 (249)
Q Consensus 242 p~a 244 (249)
...
T Consensus 569 ~~~ 571 (980)
T 3ibv_A 569 KKQ 571 (980)
T ss_dssp TTT
T ss_pred hHH
Confidence 764
No 113
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=59.21 E-value=53 Score=29.28 Aligned_cols=95 Identities=15% Similarity=0.177 Sum_probs=66.7
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchhHHHHhccHHHHHHHhh
Q psy1198 140 DQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEALPRSSAVVLDAVPTFLEKLQ 219 (249)
Q Consensus 140 ~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~qT~~VVGAVPiL~~kLL 219 (249)
..|-.|+.-+..+. .+.++ . .+.++..|+-+|+.++..++-.+-+|++--++...|+-.. ..||++.. =.
T Consensus 47 tV~kNAl~vi~~i~-~~~~e----l-~epl~~kL~vm~~ksEaIpltqeIa~a~G~la~i~Pe~v~---~vVp~lfa-ny 116 (253)
T 2db0_A 47 TVVKNAISIIMVIA-KTRED----L-YEPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPELVK---SMIPVLFA-NY 116 (253)
T ss_dssp HHHHHHHHHHHHHH-TTCGG----G-HHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCHHHHH---HHHHHHHH-HS
T ss_pred HHHHhHHHHHHHHH-HHhHH----H-HHHHHHHHHHHHhhcccCchHHHHHHHHhHHHHhCHHHHH---hhHHHHHH-HH
Confidence 45666666555433 11111 2 2567888888888888888888999999999999997544 66788876 34
Q ss_pred cCCChhHHHHHHHHHHHhhhhchhH
Q psy1198 220 VIQCMDVAEQSLTALEMLSRRHSKA 244 (249)
Q Consensus 220 si~yiDVAEQALwALenISgD~p~a 244 (249)
.+-...+.=-.-.+||.|++-+|.-
T Consensus 117 rigd~kikIn~~yaLeeIaranP~l 141 (253)
T 2db0_A 117 RIGDEKTKINVSYALEEIAKANPML 141 (253)
T ss_dssp CCCSHHHHHHHHHHHHHHHHHCHHH
T ss_pred hcCCccceecHHHHHHHHHHhChHH
Confidence 5556666666778899999888863
No 114
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=58.43 E-value=35 Score=27.46 Aligned_cols=108 Identities=10% Similarity=-0.001 Sum_probs=66.9
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchhHH
Q psy1198 126 AQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEALPRSSA 205 (249)
Q Consensus 126 l~~Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~qT~ 205 (249)
+.++|+...+..-+..-.....++|+++....+ .....+..|.+-|++ .||.+|+.|-..|=.++.--....+
T Consensus 2 ~~~~iekATs~~l~~~dw~~~leicD~I~~~~~------~~k~a~rai~krl~~-~n~~vql~AL~LLe~~vkNCG~~fh 74 (148)
T 1mhq_A 2 LELWLNKATDPSMSEQDWSAIQNFCEQVNTDPN------GPTHAPWLLAHKIQS-PQEKEALYALTVLEMCMNHCGEKFH 74 (148)
T ss_dssp HHHHHHHHHCTTCSSCCHHHHHHHHHHHHHSSH------HHHHHHHHHHHHHTC-SSHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred HHHHHHHHcCCCCCCcCHHHHHHHHHHHHcCCc------cHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHcCHHHH
Confidence 445555554422222234556788888866421 124566677777764 5799998888777777766565665
Q ss_pred HHh---ccHHHHHHHhhcC------CChhHHHHHHHHHHHhhhhc
Q psy1198 206 VVL---DAVPTFLEKLQVI------QCMDVAEQSLTALEMLSRRH 241 (249)
Q Consensus 206 ~VV---GAVPiL~~kLLsi------~yiDVAEQALwALenISgD~ 241 (249)
.-| .-+.-|+ ||..- .+.+|.+.++..+..-+...
T Consensus 75 ~evas~~Fl~eL~-kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f 118 (148)
T 1mhq_A 75 SEVAKFRFLNELI-KVLSPKYLGSWATGKVKGRVIEILFSWTVWF 118 (148)
T ss_dssp HHHTSHHHHHHHH-HTTCCSTTSCCCCHHHHHHHHHHHHHHHHHC
T ss_pred HHHhhHHHHHHHH-HHHccccCCCCCCHHHHHHHHHHHHHHHHHc
Confidence 555 4455555 35542 46899999998888766543
No 115
>3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, nucleus, phosphoprotein, UBL conjugation pathway, WD repeat, nuclear protein; 1.60A {Saccharomyces cerevisiae}
Probab=55.12 E-value=50 Score=28.67 Aligned_cols=34 Identities=12% Similarity=0.002 Sum_probs=23.7
Q ss_pred ChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCc
Q psy1198 168 QVVPALITLLSMDHNFDMMNNACRALTYMMEALP 201 (249)
Q Consensus 168 glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp 201 (249)
+++..++...-.+.+|..++.++|+|.|+++-.+
T Consensus 89 ~~l~~~l~~~~~~~~~~~~ml~lR~l~NlF~~~~ 122 (253)
T 3gae_A 89 SDIKDYIEEGLGNKNITLTMLTVRILVNCFNNEN 122 (253)
T ss_dssp GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHhcCCCchhHHHHHHHHHHHcccCCc
Confidence 3444444333334578899999999999998655
No 116
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=48.65 E-value=15 Score=30.17 Aligned_cols=81 Identities=5% Similarity=-0.009 Sum_probs=50.2
Q ss_pred hhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcC
Q psy1198 121 DTATKAQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEAL 200 (249)
Q Consensus 121 ~~~~rl~~Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgt 200 (249)
+...-++.|...|++ .++..|+.||.-|-.+...+..+-...+-...|+..|+.+++...+++++..+...|-.-.+.+
T Consensus 49 ~~keA~ral~krl~~-~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~~f 127 (163)
T 1x5b_A 49 GAKDCLKAIMKRVNH-KVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSEEF 127 (163)
T ss_dssp HHHHHHHHHHHHHTC-SSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHh
Confidence 444556666777887 4888888888766554444322222234456788899988876456777666655555555544
Q ss_pred ch
Q psy1198 201 PR 202 (249)
Q Consensus 201 p~ 202 (249)
+.
T Consensus 128 ~~ 129 (163)
T 1x5b_A 128 QK 129 (163)
T ss_dssp TT
T ss_pred cC
Confidence 43
No 117
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens}
Probab=48.56 E-value=48 Score=26.96 Aligned_cols=112 Identities=15% Similarity=0.194 Sum_probs=67.2
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchh
Q psy1198 124 TKAQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEALPRS 203 (249)
Q Consensus 124 ~rl~~Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~q 203 (249)
+.+.++|+...+..-+..-.....++|+++....+ .....+..|.+-|....|+..|+.|-..|-.++.---..
T Consensus 15 t~~~~~IekATs~~l~~~Dw~~ileicD~In~~~~------~pkeA~ral~KRl~~~~n~~~~l~AL~LLe~cvkNCG~~ 88 (152)
T 3rru_A 15 TSVGHLIEKATFAGVQTEDWGQFMHICDIINTTQD------GPKDAVKALKKRISKNYNHKEIQLTLSLIDMCVQNCGPS 88 (152)
T ss_dssp SHHHHHHHHHTCSSCCSCCHHHHHHHHHHHHHSTT------HHHHHHHHHHHHHTTCCBHHHHHHHHHHHHHHHHHSCHH
T ss_pred ChHHHHHHHHcCCCCCCccHHHHHHHHHHHhCCCc------cHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhcCHH
Confidence 45777777765432223335677899999876422 235678888888875557888887654444444433333
Q ss_pred HHHHhc---cHH-HHHHHhhcCC---ChhHHHHHHHHHHHhhhhch
Q psy1198 204 SAVVLD---AVP-TFLEKLQVIQ---CMDVAEQSLTALEMLSRRHS 242 (249)
Q Consensus 204 T~~VVG---AVP-iL~~kLLsi~---yiDVAEQALwALenISgD~p 242 (249)
.+..|. -+. .|+ ||++-. ..+|.+.++..|..-+...+
T Consensus 89 fh~eiask~Fl~e~L~-kl~~~~~~~~~~Vk~kil~li~~Wa~~F~ 133 (152)
T 3rru_A 89 FQSLIVKKEFVKENLV-KLLNPRYNLPLDIQNRILNFIKTWSQGFP 133 (152)
T ss_dssp HHHHHSSHHHHTTTTG-GGGSGGGCCCHHHHHHHHHHHHHHHTCCS
T ss_pred HHHHHHhhHhHHHHHH-HHhcCCCCCcHHHHHHHHHHHHHHHHHhC
Confidence 344441 121 233 344432 24799999999988775544
No 118
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=47.69 E-value=30 Score=35.79 Aligned_cols=75 Identities=9% Similarity=0.123 Sum_probs=43.7
Q ss_pred ChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchhHHH-----HhccHHHHHHHhhc---CCChhHHHHHHHHHHHhhh
Q psy1198 168 QVVPALITLLSMDHNFDMMNNACRALTYMMEALPRSSAV-----VLDAVPTFLEKLQV---IQCMDVAEQSLTALEMLSR 239 (249)
Q Consensus 168 glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~qT~~-----VVGAVPiL~~kLLs---i~yiDVAEQALwALenISg 239 (249)
.++..|++.|. +++|.+|-.|||+|.+|++...+.-.. ...-++.|++.+.. .-..+-.+.+..|++.|..
T Consensus 540 ~vl~~L~~~l~-~~~~~v~~~A~~al~~l~~~c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi~ 618 (1023)
T 4hat_C 540 TVILKLFEFMH-ETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIIS 618 (1023)
T ss_dssp HHHHHHHHHTT-CSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhh-cCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 45555566663 456899999999999999965433210 00123333322222 1134455777888888777
Q ss_pred hchh
Q psy1198 240 RHSK 243 (249)
Q Consensus 240 D~p~ 243 (249)
..|.
T Consensus 619 ~~~~ 622 (1023)
T 4hat_C 619 EERS 622 (1023)
T ss_dssp TCCS
T ss_pred hCCC
Confidence 6663
No 119
>3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, nucleus, phosphoprotein, UBL conjugation pathway, WD repeat, nuclear protein; 1.60A {Saccharomyces cerevisiae}
Probab=46.10 E-value=14 Score=32.16 Aligned_cols=115 Identities=10% Similarity=0.107 Sum_probs=67.2
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCC-CCccChHHHHHHhc----CCC---CCccHHHHHHHHHHHH
Q psy1198 125 KAQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTG-FPVKQVVPALITLL----SMD---HNFDMMNNACRALTYM 196 (249)
Q Consensus 125 rl~~Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~-fp~~glVP~LV~iL----s~e---~n~dLQ~eAArALTNI 196 (249)
-+..++....+..++..+|-+++-+|++++-.. --.. +....+...+++.+ ... ++..+|.-+|..+.|+
T Consensus 90 ~l~~~l~~~~~~~~~~~~ml~lR~l~NlF~~~~--~g~~l~~~~~~~~~i~~~i~~~~~~~~~~~~~nl~iA~ATl~~N~ 167 (253)
T 3gae_A 90 DIKDYIEEGLGNKNITLTMLTVRILVNCFNNEN--WGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNY 167 (253)
T ss_dssp GGHHHHHHHTTCSSHHHHHHHHHHHHHHTTCTT--THHHHHTSHHHHTTHHHHSCSCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCchhHHHHHHHHHHHcccCCc--hHHHHHhcchhHHHHHHHHHHHhhhcccCCchhHHHHHHHHHHHH
Confidence 455565544323478899999999999886532 1010 11112233334332 221 3678999999999999
Q ss_pred HhcCchhHHHHhccHHHHHHHhhc----C----CChhHHHHHHHHHHHhhhhch
Q psy1198 197 MEALPRSSAVVLDAVPTFLEKLQV----I----QCMDVAEQSLTALEMLSRRHS 242 (249)
Q Consensus 197 asgtp~qT~~VVGAVPiL~~kLLs----i----~yiDVAEQALwALenISgD~p 242 (249)
+-..-.... -+..++.+++.+.. . ++.|..-.+|-|||++.-..+
T Consensus 168 av~~~~~~~-~~e~~~~l~~~i~~~~~~~e~~~~d~Ea~yR~LvAlGtL~~~~~ 220 (253)
T 3gae_A 168 SALVTKGNS-DLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVEP 220 (253)
T ss_dssp HHHHHTSCS-CTTHHHHHHHHHHTTTTTSHHHHHSHHHHHHHHHHHHHHHHHSG
T ss_pred HHHHhhccc-hHHHHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHHHHhCcH
Confidence 875432111 02233344443332 2 367888999999999886544
No 120
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=41.40 E-value=1e+02 Score=26.18 Aligned_cols=101 Identities=16% Similarity=0.116 Sum_probs=56.3
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCCC-----CCccH---HHHHHHHHHHH
Q psy1198 125 KAQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMD-----HNFDM---MNNACRALTYM 196 (249)
Q Consensus 125 rl~~Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~e-----~n~dL---Q~eAArALTNI 196 (249)
=++++.+.+.+ . ..-+|++.|+. +|- ...++|.|++|+..+ +|..+ ++..+|||.
T Consensus 12 yf~~It~a~~~-~---~r~~aL~sL~~------D~g-----L~~LlPyf~~fI~~~v~~nl~~l~~L~~lm~~~~ALl-- 74 (196)
T 4atg_A 12 YFDKILSMIKS-D---MKDIAIECLEK------ESG-----LQQLVPYFIQHISELILKSFKEAEVLKTCIALYFSLI-- 74 (196)
T ss_dssp HHHHHHHHHTS-T---THHHHHHHHHH------CSS-----CTTTHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHh-H---HHHHHHHHHhc------CCC-----hhhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHH--
Confidence 35777777765 1 23445555432 333 257999999988642 23332 233333332
Q ss_pred HhcCchhHHHHh-ccHHHHHHHhhcCC--ChhHHHHHHHHHHHhhhhchh
Q psy1198 197 MEALPRSSAVVL-DAVPTFLEKLQVIQ--CMDVAEQSLTALEMLSRRHSK 243 (249)
Q Consensus 197 asgtp~qT~~VV-GAVPiL~~kLLsi~--yiDVAEQALwALenISgD~p~ 243 (249)
+-..=...--+ --+|.++..++.-+ ..+++|.|-..|..|.+.++.
T Consensus 75 -~N~~l~lepYlH~LipsvLtCll~k~l~~~~LRd~AA~lL~~I~~~~~~ 123 (196)
T 4atg_A 75 -KNKHVFIDPYLHQILPSLLTCVIGKSIVDDDVRKMSADIVKYIYDTYSR 123 (196)
T ss_dssp -HCTTCCCGGGHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHHHTT
T ss_pred -cCCCCChHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHhCc
Confidence 21111111111 45666666565422 237999999999999998765
No 121
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=41.01 E-value=1.3e+02 Score=30.27 Aligned_cols=73 Identities=16% Similarity=0.119 Sum_probs=50.4
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHh----c
Q psy1198 124 TKAQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHNFDMMNNACRALTYMME----A 199 (249)
Q Consensus 124 ~rl~~Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIas----g 199 (249)
..+.+++..+.+ .|...+-+|-+.|.++- . .| ++.+.+..+|..+.++++++.|+-.|.|... .
T Consensus 16 ~~l~~~l~~~~~-p~~~~r~~Ae~~L~~~~-~--~p--------~~~~~l~~iL~~s~~~~vr~~aa~~Lk~~i~~~W~~ 83 (1049)
T 3m1i_C 16 ALLDQVVSTFYQ-GSGVQQKQAQEILTKFQ-D--NP--------DAWQKADQILQFSTNPQSKFIALSILDKLITRKWKL 83 (1049)
T ss_dssp HHHHHHHHHHHH-CCHHHHHHHHHHHHHHH-H--ST--------TGGGGHHHHHHHCSCHHHHHHHHHHHHHHHHHTGGG
T ss_pred HHHHHHHHHHhC-CChHHHHHHHHHHHHHH-h--Cc--------hHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhhCcc
Confidence 567788888777 46666667777775542 2 11 3555677778766789999999999999873 4
Q ss_pred CchhHHHHh
Q psy1198 200 LPRSSAVVL 208 (249)
Q Consensus 200 tp~qT~~VV 208 (249)
+|+.....+
T Consensus 84 l~~~~~~~i 92 (1049)
T 3m1i_C 84 LPNDHRIGI 92 (1049)
T ss_dssp SCHHHHHHH
T ss_pred CCHHHHHHH
Confidence 565555544
No 122
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=38.32 E-value=16 Score=31.32 Aligned_cols=83 Identities=12% Similarity=0.081 Sum_probs=52.6
Q ss_pred hhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhc
Q psy1198 120 EDTATKAQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEA 199 (249)
Q Consensus 120 s~~~~rl~~Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasg 199 (249)
.+...-++.|...|++ .++..||.||.-|--+......+-...|-...|+..|+++++...+++++..+...|..-.+.
T Consensus 41 ~~~k~a~ral~krl~~-~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~ 119 (226)
T 3zyq_A 41 TQAKYAVNSIKKKVND-KNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWAHA 119 (226)
T ss_dssp SCHHHHHHHHHHHHTC-SSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Confidence 3445566777788888 599999999876644433332222223555678889999987655667766665555555555
Q ss_pred Cchh
Q psy1198 200 LPRS 203 (249)
Q Consensus 200 tp~q 203 (249)
++..
T Consensus 120 f~~~ 123 (226)
T 3zyq_A 120 FRNE 123 (226)
T ss_dssp TTTC
T ss_pred hCCC
Confidence 5443
No 123
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=36.77 E-value=42 Score=27.19 Aligned_cols=84 Identities=15% Similarity=0.104 Sum_probs=54.3
Q ss_pred hhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCCC-----CCccHHHHHHHHHH
Q psy1198 120 EDTATKAQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMD-----HNFDMMNNACRALT 194 (249)
Q Consensus 120 s~~~~rl~~Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~e-----~n~dLQ~eAArALT 194 (249)
.+...-++.|...|++ .++..|+.||.-|--+......+--..|-...|+..|+++++.. .+++++-.....|.
T Consensus 44 ~~pk~a~ral~krl~~-~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~ 122 (149)
T 3g2s_A 44 EGPPLATRLLAHKIQS-PQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLY 122 (149)
T ss_dssp SHHHHHHHHHHHHHTC-SSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHH
Confidence 4455566777788988 59999999987664444333222222355568999999999742 34666666666666
Q ss_pred HHHhcCchhH
Q psy1198 195 YMMEALPRSS 204 (249)
Q Consensus 195 NIasgtp~qT 204 (249)
.-.+.++...
T Consensus 123 ~W~~~f~~~p 132 (149)
T 3g2s_A 123 SWTVGLPEEV 132 (149)
T ss_dssp HHHHHCTTCH
T ss_pred HHHHHhCCCc
Confidence 6666666543
No 124
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=33.03 E-value=21 Score=30.14 Aligned_cols=79 Identities=4% Similarity=-0.008 Sum_probs=49.0
Q ss_pred hhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcC
Q psy1198 121 DTATKAQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEAL 200 (249)
Q Consensus 121 ~~~~rl~~Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgt 200 (249)
+...-++.|...|++ .++..|+.||.-|-.+......+--..|-...|+..|+.+++...+++++--+...+-.-.+.+
T Consensus 39 ~~k~a~r~l~krl~~-~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f 117 (220)
T 1dvp_A 39 TPKNAFAAIKKKMNS-PNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWAYAF 117 (220)
T ss_dssp CHHHHHHHHHHHHTC-SSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHh
Confidence 444556677778888 5899999998777655544322221234455789999998876555666654444444434333
No 125
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=32.19 E-value=1.5e+02 Score=30.46 Aligned_cols=59 Identities=10% Similarity=0.101 Sum_probs=42.7
Q ss_pred CHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCch
Q psy1198 138 DEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEALPR 202 (249)
Q Consensus 138 D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~ 202 (249)
++...-.+|+-+...++- -++..+....+++.+.++|.. ++++..||.||+.|++-...
T Consensus 206 ~~~l~~~~L~~l~s~i~w---i~~~~i~~~~ll~~l~~~L~~---~~~r~~A~ecL~ei~~k~~~ 264 (980)
T 3ibv_A 206 NYGTVGLCLQVYAQWVSW---ININLIVNEPCMNLLYSFLQI---EELRCAACETMTEIVNKKMK 264 (980)
T ss_dssp CHHHHHHHHHHHHHHTTT---SCHHHHHCHHHHHHHHHHTTS---HHHHHHHHHHHHHHHHSCCC
T ss_pred CHHHHHHHHHHHHHHHhh---cCHHhhhcchHHHHHHHHcCC---hHHHHHHHHHHHHHHHcCCC
Confidence 555555566666666652 333334457899999999964 89999999999999987654
No 126
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=31.03 E-value=1.4e+02 Score=27.61 Aligned_cols=103 Identities=17% Similarity=0.152 Sum_probs=64.0
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCC-CccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchhH
Q psy1198 126 AQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGF-PVKQVVPALITLLSMDHNFDMMNNACRALTYMMEALPRSS 204 (249)
Q Consensus 126 l~~Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~f-p~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~qT 204 (249)
+..|+..+.. .+...|--+|+.|.+++.. .+-.+++ ....||..++.++.. .+..+..-|--.|-++++-.+...
T Consensus 162 L~~Li~vi~~-~~gN~q~Y~L~AL~~LM~~--v~Gm~gvvs~~~fI~~lyslv~s-~~~~V~k~AL~LL~v~V~~se~~~ 237 (339)
T 3dad_A 162 LSCLIRVGAA-ADHNYQSYILRALGQLMLF--VDGMLGVVAHSDTIQWLYTLCAS-LSRLVVKTALKLLLVFVEYSENNA 237 (339)
T ss_dssp HHHHHHHHTT-SCHHHHHHHHHHHHHHTTS--HHHHHHHHHCHHHHHHHHHGGGC-SCHHHHHHHHHHHHHHHHHCGGGH
T ss_pred HHHHHHHHHh-cChHHHHHHHHHHHHHHhc--cccccchhCCHHHHHHHHHHHcC-ccHHHHHHHHHHHHHHHccCcccc
Confidence 5666666666 4788887788888887654 1111112 134688888888884 457777777777888888776555
Q ss_pred HHHhccHH------------HHHHHhh--cCCChhHHHHHHH
Q psy1198 205 AVVLDAVP------------TFLEKLQ--VIQCMDVAEQSLT 232 (249)
Q Consensus 205 ~~VVGAVP------------iL~~kLL--si~yiDVAEQALw 232 (249)
..|+-+|+ .|+..|. ++.+.++.--++.
T Consensus 238 ~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~amt 279 (339)
T 3dad_A 238 PLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTVT 279 (339)
T ss_dssp HHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHHH
T ss_pred hHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHHH
Confidence 55545554 6776443 1445555444443
No 127
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=30.92 E-value=54 Score=26.37 Aligned_cols=84 Identities=14% Similarity=0.075 Sum_probs=54.2
Q ss_pred hhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCCC-----CCccHHHHHHHHHH
Q psy1198 120 EDTATKAQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMD-----HNFDMMNNACRALT 194 (249)
Q Consensus 120 s~~~~rl~~Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~e-----~n~dLQ~eAArALT 194 (249)
.+...-++.|...|++ .++..|+.||.-|--+......+--..|-...|+..|+++++.. .+++++.-+...|-
T Consensus 34 ~~~k~a~rai~krl~~-~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~ 112 (148)
T 1mhq_A 34 NGPTHAPWLLAHKIQS-PQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILF 112 (148)
T ss_dssp HHHHHHHHHHHHHHTC-SSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHH
Confidence 3444556777778888 59999999987765544443222223455678999999999742 25677766665555
Q ss_pred HHHhcCchhH
Q psy1198 195 YMMEALPRSS 204 (249)
Q Consensus 195 NIasgtp~qT 204 (249)
.-.+.++...
T Consensus 113 ~W~~~f~~~p 122 (148)
T 1mhq_A 113 SWTVWFPEDI 122 (148)
T ss_dssp HHHHHCTTCH
T ss_pred HHHHHcCCCc
Confidence 5555565443
No 128
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=30.28 E-value=17 Score=27.14 Aligned_cols=19 Identities=37% Similarity=0.559 Sum_probs=15.0
Q ss_pred CccceeccCCCCCchhhhh
Q psy1198 35 GKAATLYGAPGGGKAATLY 53 (249)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~ 53 (249)
.....+||.||.||...+.
T Consensus 43 ~~~~ll~G~~G~GKT~l~~ 61 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVE 61 (195)
T ss_dssp SCEEEEECCTTSCHHHHHH
T ss_pred CCceEEECCCCCCHHHHHH
Confidence 4557899999999987653
No 129
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=29.86 E-value=91 Score=32.75 Aligned_cols=78 Identities=13% Similarity=0.172 Sum_probs=44.2
Q ss_pred cChHHHHHHhcC----CCCCccHHHHHHHHHHHHHhcCchhHH----HHhccHHHHHHHhhcCCChhHHHHHHHHHHHhh
Q psy1198 167 KQVVPALITLLS----MDHNFDMMNNACRALTYMMEALPRSSA----VVLDAVPTFLEKLQVIQCMDVAEQSLTALEMLS 238 (249)
Q Consensus 167 ~glVP~LV~iLs----~e~n~dLQ~eAArALTNIasgtp~qT~----~VVGAVPiL~~kLLsi~yiDVAEQALwALenIS 238 (249)
+.++|.++++|- ....-|-.-.-+-++.+++.-.|+.+. .+-..|..|++.+. -++.+|.|.|..||.+|+
T Consensus 516 ~~~Lp~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h~~~L~~vl~~L~~~m~-~~~~~vq~aA~~af~~i~ 594 (1073)
T 3gjx_A 516 KRFLVTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHWKFLKTVVNKLFEFMH-ETHDGVQDMACDTFIKIA 594 (1073)
T ss_dssp HHHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHTT-CCSTTHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHhCHHHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHH
Confidence 367777776663 111111111222223335555555532 11155555555333 357899999999999999
Q ss_pred hhchhHH
Q psy1198 239 RRHSKAI 245 (249)
Q Consensus 239 gD~p~aI 245 (249)
.++.+.+
T Consensus 595 ~~C~~~l 601 (1073)
T 3gjx_A 595 QKCRRHF 601 (1073)
T ss_dssp HHTGGGG
T ss_pred HHHHHHH
Confidence 9998764
No 130
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=29.33 E-value=1.5e+02 Score=30.55 Aligned_cols=64 Identities=16% Similarity=0.162 Sum_probs=43.1
Q ss_pred HHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCC------CCCccHHHHHHHHHHHHHhcCchhH
Q psy1198 131 VSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSM------DHNFDMMNNACRALTYMMEALPRSS 204 (249)
Q Consensus 131 ~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~------e~n~dLQ~eAArALTNIasgtp~qT 204 (249)
+.+.+ .|+...+..|..|.++= .| ..++.|..+|.. +....++..|.|||-++.+-.|+.+
T Consensus 447 ~~~~~-~~~~~~~~~LkaLGN~g----------~p--~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~~v 513 (1056)
T 1lsh_A 447 QSSDR-AKEEEIVLALKALGNAG----------QP--NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRKV 513 (1056)
T ss_dssp HHHHT-TCHHHHHHHHHHHHHHT----------CG--GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHHH
T ss_pred HHHhc-CChHHHHHHHHHhhccC----------Ch--hHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhchHHH
Confidence 44555 36666666666665542 22 368888888853 2245788999999999999888766
Q ss_pred HHH
Q psy1198 205 AVV 207 (249)
Q Consensus 205 ~~V 207 (249)
..|
T Consensus 514 ~~i 516 (1056)
T 1lsh_A 514 QEI 516 (1056)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
No 131
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=29.13 E-value=13 Score=33.50 Aligned_cols=21 Identities=14% Similarity=-0.012 Sum_probs=16.7
Q ss_pred CCccceeccCCCCCchhhhhh
Q psy1198 34 GGKAATLYGAPGGGKAATLYA 54 (249)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~ 54 (249)
-+....+||.||.||.++.-.
T Consensus 44 ~~~~lli~GpPGTGKT~~v~~ 64 (318)
T 3te6_A 44 QNKLFYITNADDSTKFQLVND 64 (318)
T ss_dssp CCCEEEEECCCSHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHH
Confidence 345678999999999987643
No 132
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=29.04 E-value=2.7e+02 Score=23.64 Aligned_cols=99 Identities=17% Similarity=0.218 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCC-CCCccChHHHHHHhcCCCC-Cc-cHHHHHHHHHHHHHhcCchhHHHHh-ccHHHH
Q psy1198 139 EDQQLQAVVEMCQMLVMGNEDTLT-GFPVKQVVPALITLLSMDH-NF-DMMNNACRALTYMMEALPRSSAVVL-DAVPTF 214 (249)
Q Consensus 139 ~~~QLeAL~eLrelLSmsnep~I~-~fp~~glVP~LV~iLs~e~-n~-dLQ~eAArALTNIasgtp~qT~~VV-GAVPiL 214 (249)
.-.++..+.++.+-|.. ||.|. +.-...++|.++.|+=..+ .+ .+--.||..|.+|+.-.......+- -.+-.|
T Consensus 59 ~l~~L~~lm~~~~ALl~--N~~l~lepYlH~LipsvLtCll~k~l~~~~LRd~AA~lL~~I~~~~~~~y~~L~~RI~~tl 136 (196)
T 4atg_A 59 EAEVLKTCIALYFSLIK--NKHVFIDPYLHQILPSLLTCVIGKSIVDDDVRKMSADIVKYIYDTYSRSYKTLAPRVLKTL 136 (196)
T ss_dssp CHHHHHHHHHHHHHHHH--CTTCCCGGGHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHHHTTTSTTHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHc--CCCCChHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHhCccCchHHHHHHHHH
Confidence 34566777777676655 56654 2224589999888873322 22 7999999999999998776554444 444555
Q ss_pred HHHhhcC-CChhHHHHHHHHHHHhhh
Q psy1198 215 LEKLQVI-QCMDVAEQSLTALEMLSR 239 (249)
Q Consensus 215 ~~kLLsi-~yiDVAEQALwALenISg 239 (249)
.+-|++. ..+-.--=|++.|..+-.
T Consensus 137 ~k~l~dp~~~l~t~YGAi~GL~~lG~ 162 (196)
T 4atg_A 137 KGVWMDPNRSEDSQYGALYCLSILSK 162 (196)
T ss_dssp HHHHTCTTSCHHHHHHHHHHHHHHCH
T ss_pred HHHHcCCCCChHHHHHHHHHHHHhHH
Confidence 5545442 223444446666655544
No 133
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=28.67 E-value=34 Score=29.44 Aligned_cols=26 Identities=35% Similarity=0.578 Sum_probs=19.6
Q ss_pred hCCCCCCccceeccCCCCCchhhhhh
Q psy1198 29 SGGGQGGKAATLYGAPGGGKAATLYA 54 (249)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 54 (249)
..+...++..-|||.||.||.....+
T Consensus 64 ~~~~~~~~~vLl~GppGtGKT~la~~ 89 (368)
T 3uk6_A 64 REGKIAGRAVLIAGQPGTGKTAIAMG 89 (368)
T ss_dssp HTTCCTTCEEEEEESTTSSHHHHHHH
T ss_pred HcCCCCCCEEEEECCCCCCHHHHHHH
Confidence 34455578899999999999866543
No 134
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=28.11 E-value=25 Score=33.23 Aligned_cols=25 Identities=40% Similarity=0.571 Sum_probs=18.7
Q ss_pred CCCCCccceeccCCCCCchhhhhhh
Q psy1198 31 GGQGGKAATLYGAPGGGKAATLYAQ 55 (249)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~ 55 (249)
|-.--+..-|||.||.||.....|-
T Consensus 211 g~~~prGvLLyGPPGTGKTllAkAi 235 (434)
T 4b4t_M 211 GIRAPKGALMYGPPGTGKTLLARAC 235 (434)
T ss_dssp CCCCCCEEEEESCTTSSHHHHHHHH
T ss_pred CCCCCCeeEEECcCCCCHHHHHHHH
Confidence 4455677899999999997655543
No 135
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=26.33 E-value=46 Score=28.42 Aligned_cols=23 Identities=30% Similarity=0.359 Sum_probs=17.7
Q ss_pred CCCccceeccCCCCCchhhhhhh
Q psy1198 33 QGGKAATLYGAPGGGKAATLYAQ 55 (249)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~ 55 (249)
..+...-+||.||.||...+.+-
T Consensus 35 ~~~~~lll~G~~GtGKT~la~~i 57 (324)
T 1l8q_A 35 SLYNPIFIYGSVGTGKTHLLQAA 57 (324)
T ss_dssp TSCSSEEEECSSSSSHHHHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHH
Confidence 34667889999999998666543
No 136
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=26.16 E-value=26 Score=27.24 Aligned_cols=23 Identities=39% Similarity=0.531 Sum_probs=18.2
Q ss_pred CCccceeccCCCCCchhhhhhhc
Q psy1198 34 GGKAATLYGAPGGGKAATLYAQS 56 (249)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~ 56 (249)
.|+.-.|||.||.||...+.+-.
T Consensus 37 ~g~~~~l~G~~G~GKTtL~~~i~ 59 (180)
T 3ec2_A 37 EGKGLTFVGSPGVGKTHLAVATL 59 (180)
T ss_dssp GCCEEEECCSSSSSHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHH
Confidence 46778999999999987765543
No 137
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=25.97 E-value=1e+02 Score=32.16 Aligned_cols=78 Identities=5% Similarity=0.106 Sum_probs=46.5
Q ss_pred hHHHHHHhc-C-CCCCccHHHHHHHHHHHHHhcCchhHHHHhccHHHHHHHhhcC-----------CChhHHHHHHHHHH
Q psy1198 169 VVPALITLL-S-MDHNFDMMNNACRALTYMMEALPRSSAVVLDAVPTFLEKLQVI-----------QCMDVAEQSLTALE 235 (249)
Q Consensus 169 lVP~LV~iL-s-~e~n~dLQ~eAArALTNIasgtp~qT~~VVGAVPiL~~kLLsi-----------~yiDVAEQALwALe 235 (249)
++|.|+++| + +.++|.+..-...||-.+.+-+......+-..+..|+..|... ...+|+++|..+|-
T Consensus 530 ~~~~Ll~~ll~~~~~~p~l~~~~i~~l~~l~~~~~~~p~~L~~vL~~ll~~l~~~~~~~~~~~~~~~~k~vr~~a~~al~ 609 (1204)
T 3a6p_A 530 DGIELLQMVLNFDTKDPLILSCVLTNVSALFPFVTYRPEFLPQVFSKLFSSVTFETVEESKAPRTRAVRNVRRHACSSII 609 (1204)
T ss_dssp HHHHHHHHHHHCCCSCHHHHHHHHHHHHHHGGGGGTCGGGHHHHHHHHHHHHHCCTTCSTTSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhhccCCcccccccccHHHHHHHHHHHHHHH
Confidence 567777663 3 3456878776766664444433322221113344444333221 23489999999999
Q ss_pred HhhhhchhHHh
Q psy1198 236 MLSRRHSKAIL 246 (249)
Q Consensus 236 nISgD~p~aIL 246 (249)
.|+.++|..++
T Consensus 610 ~L~~~~~~~L~ 620 (1204)
T 3a6p_A 610 KMCRDYPQLVL 620 (1204)
T ss_dssp HHHHHCHHHHG
T ss_pred HHHHHhhHHHH
Confidence 99999998764
No 138
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=25.96 E-value=23 Score=27.12 Aligned_cols=16 Identities=44% Similarity=0.646 Sum_probs=13.4
Q ss_pred ceeccCCCCCchhhhh
Q psy1198 38 ATLYGAPGGGKAATLY 53 (249)
Q Consensus 38 ~~~~~~~~~~~~~~~~ 53 (249)
..+||.||.||...+.
T Consensus 41 ~ll~G~~G~GKT~l~~ 56 (226)
T 2chg_A 41 LLFSGPPGTGKTATAI 56 (226)
T ss_dssp EEEECSTTSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 7899999999976543
No 139
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=24.38 E-value=61 Score=26.66 Aligned_cols=82 Identities=16% Similarity=0.084 Sum_probs=51.2
Q ss_pred hhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCC-----CCCccHHHHHHHHHHH
Q psy1198 121 DTATKAQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSM-----DHNFDMMNNACRALTY 195 (249)
Q Consensus 121 ~~~~rl~~Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~-----e~n~dLQ~eAArALTN 195 (249)
+...-++.|...|++ .++..|+.||.-|-.+...+..+--..|-...|+..|+++++. ..+++++.-+...|-.
T Consensus 47 ~~k~A~ral~krl~~-~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~ 125 (171)
T 1juq_A 47 GPQIAVRLLAHKIQS-PQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYS 125 (171)
T ss_dssp HHHHHHHHHHHHHTC-SSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHH
Confidence 444456667778888 4899999888766544443322222235556889999999863 1246666666655555
Q ss_pred HHhcCchh
Q psy1198 196 MMEALPRS 203 (249)
Q Consensus 196 Iasgtp~q 203 (249)
-.+.++..
T Consensus 126 W~~~f~~~ 133 (171)
T 1juq_A 126 WTMALPEE 133 (171)
T ss_dssp HHHHCTTC
T ss_pred HHHHcCCC
Confidence 55555543
No 140
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=24.35 E-value=34 Score=29.62 Aligned_cols=25 Identities=32% Similarity=0.448 Sum_probs=18.8
Q ss_pred CCCCCccceeccCCCCCchhhhhhh
Q psy1198 31 GGQGGKAATLYGAPGGGKAATLYAQ 55 (249)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~ 55 (249)
+....+..-|||.||.||.....+-
T Consensus 47 ~~~~~~~vLl~GppGtGKT~la~ai 71 (322)
T 3eie_A 47 NRKPTSGILLYGPPGTGKSYLAKAV 71 (322)
T ss_dssp TCCCCCEEEEECSSSSCHHHHHHHH
T ss_pred CCCCCCeEEEECCCCCcHHHHHHHH
Confidence 4455677899999999997665443
No 141
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=23.86 E-value=30 Score=27.21 Aligned_cols=20 Identities=25% Similarity=0.424 Sum_probs=16.1
Q ss_pred CCccceeccCCCCCchhhhh
Q psy1198 34 GGKAATLYGAPGGGKAATLY 53 (249)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~ 53 (249)
.+....+||.||.||...+.
T Consensus 51 ~~~~~ll~G~~G~GKT~la~ 70 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIH 70 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHH
Confidence 45678899999999976554
No 142
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=22.99 E-value=37 Score=26.07 Aligned_cols=18 Identities=28% Similarity=0.318 Sum_probs=14.6
Q ss_pred ccceeccCCCCCchhhhh
Q psy1198 36 KAATLYGAPGGGKAATLY 53 (249)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~ 53 (249)
....+||.||.||...+.
T Consensus 46 ~~~ll~G~~G~GKT~l~~ 63 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIAR 63 (250)
T ss_dssp SEEEEECSTTSCHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 467899999999986654
No 143
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=22.96 E-value=35 Score=32.21 Aligned_cols=24 Identities=42% Similarity=0.580 Sum_probs=18.0
Q ss_pred CCCCCccceeccCCCCCchhhhhh
Q psy1198 31 GGQGGKAATLYGAPGGGKAATLYA 54 (249)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~ 54 (249)
|-.--+..-|||.||.||.....|
T Consensus 211 g~~~prGvLL~GPPGtGKTllAkA 234 (437)
T 4b4t_L 211 GIKPPKGVLLYGPPGTGKTLLAKA 234 (437)
T ss_dssp CCCCCCEEEEESCTTSSHHHHHHH
T ss_pred CCCCCCeEEEECCCCCcHHHHHHH
Confidence 444567788999999999765544
No 144
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=22.80 E-value=36 Score=32.03 Aligned_cols=25 Identities=36% Similarity=0.569 Sum_probs=18.4
Q ss_pred CCCCCccceeccCCCCCchhhhhhh
Q psy1198 31 GGQGGKAATLYGAPGGGKAATLYAQ 55 (249)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~ 55 (249)
|-.--+..-|||.||.||.....|-
T Consensus 202 g~~~prGiLL~GPPGtGKT~lakAi 226 (428)
T 4b4t_K 202 GIDPPRGVLLYGPPGTGKTMLVKAV 226 (428)
T ss_dssp CCCCCCEEEEESCTTTTHHHHHHHH
T ss_pred CCCCCceEEEECCCCCCHHHHHHHH
Confidence 3445567889999999997665553
No 145
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=22.80 E-value=37 Score=27.53 Aligned_cols=20 Identities=40% Similarity=0.461 Sum_probs=15.0
Q ss_pred CCccceeccCCCCCchhhhh
Q psy1198 34 GGKAATLYGAPGGGKAATLY 53 (249)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~ 53 (249)
..+..-|||.||.||.....
T Consensus 38 ~~~~vll~G~~GtGKT~la~ 57 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAK 57 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHH
Confidence 34557899999999975543
No 146
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=22.72 E-value=38 Score=29.64 Aligned_cols=23 Identities=30% Similarity=0.437 Sum_probs=17.5
Q ss_pred CCCCccceeccCCCCCchhhhhh
Q psy1198 32 GQGGKAATLYGAPGGGKAATLYA 54 (249)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~ 54 (249)
....+..-|||.||.||.....+
T Consensus 42 ~~~~~~iLL~GppGtGKT~la~a 64 (322)
T 1xwi_A 42 RTPWRGILLFGPPGTGKSYLAKA 64 (322)
T ss_dssp CCCCSEEEEESSSSSCHHHHHHH
T ss_pred CCCCceEEEECCCCccHHHHHHH
Confidence 34457789999999999765544
No 147
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=22.69 E-value=14 Score=26.94 Aligned_cols=58 Identities=17% Similarity=0.221 Sum_probs=36.0
Q ss_pred ccChHHHHH--HhcCCCC-----CccHHHHHHHHHHHHHhcCchhHHHHhccHHHHHHHhhcCCChhHHHH
Q psy1198 166 VKQVVPALI--TLLSMDH-----NFDMMNNACRALTYMMEALPRSSAVVLDAVPTFLEKLQVIQCMDVAEQ 229 (249)
Q Consensus 166 ~~glVP~LV--~iLs~e~-----n~dLQ~eAArALTNIasgtp~qT~~VVGAVPiL~~kLLsi~yiDVAEQ 229 (249)
++.+++.|+ .+|+.++ ......+-+|.|..+.. .... .|...||+-|.+..|.+|++.
T Consensus 24 v~~lld~L~~~~vlt~~~~e~I~~~~t~~~kar~Lld~l~---~kG~---~af~~F~~aL~~~~~~~La~~ 88 (94)
T 2p1h_A 24 TSYIMDHMISDGFLTISEEEKVRNEPTQQQRAAMLIKMIL---KKDN---DSYVSFYNALLHEGYKDLAAL 88 (94)
T ss_dssp HHHHHHHHHHHTSSCHHHHHHHHTSSSHHHHHHHHHHHHT---TSCH---HHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHcCCChHHHHHHHHHHHH---HcCH---HHHHHHHHHHHHcCHHHHHHH
Confidence 456677666 3565332 11345566666666652 1111 488999999999888888875
No 148
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=22.45 E-value=35 Score=28.56 Aligned_cols=20 Identities=25% Similarity=0.410 Sum_probs=16.0
Q ss_pred CCCccceeccCCCCCchhhh
Q psy1198 33 QGGKAATLYGAPGGGKAATL 52 (249)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~ 52 (249)
..+..--|||.||.||....
T Consensus 65 ~~~~~vll~G~~GtGKT~la 84 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVA 84 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHH
T ss_pred CCCceEEEECCCCCCHHHHH
Confidence 44566789999999997655
No 149
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=22.40 E-value=40 Score=27.74 Aligned_cols=21 Identities=38% Similarity=0.419 Sum_probs=15.3
Q ss_pred CCccceeccCCCCCchhhhhh
Q psy1198 34 GGKAATLYGAPGGGKAATLYA 54 (249)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~ 54 (249)
-.+..-|||.||.||.....+
T Consensus 43 ~~~~vll~G~~GtGKT~la~~ 63 (268)
T 2r62_A 43 IPKGVLLVGPPGTGKTLLAKA 63 (268)
T ss_dssp CCSCCCCBCSSCSSHHHHHHH
T ss_pred CCceEEEECCCCCcHHHHHHH
Confidence 344578999999999755433
No 150
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=22.18 E-value=40 Score=27.94 Aligned_cols=23 Identities=39% Similarity=0.543 Sum_probs=17.3
Q ss_pred CCCccceeccCCCCCchhhhhhh
Q psy1198 33 QGGKAATLYGAPGGGKAATLYAQ 55 (249)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~ 55 (249)
...+..-|||.||.||.....+-
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~l 71 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAV 71 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHH
Confidence 44566889999999997665443
No 151
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=21.72 E-value=21 Score=26.77 Aligned_cols=19 Identities=37% Similarity=0.555 Sum_probs=14.6
Q ss_pred CccceeccCCCCCchhhhh
Q psy1198 35 GKAATLYGAPGGGKAATLY 53 (249)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~ 53 (249)
.....+||.||.||...+.
T Consensus 43 ~~~vll~G~~G~GKT~la~ 61 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVE 61 (187)
T ss_dssp SCEEEEESCGGGCHHHHHH
T ss_pred CCceEEECCCCCCHHHHHH
Confidence 3456899999999976543
No 152
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=21.67 E-value=56 Score=25.88 Aligned_cols=77 Identities=5% Similarity=0.045 Sum_probs=42.2
Q ss_pred hhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCC-CCCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhc
Q psy1198 121 DTATKAQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLT-GFPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEA 199 (249)
Q Consensus 121 ~~~~rl~~Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~-~fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasg 199 (249)
+...-++.|...|++ .++..|+.||.-|--+.... .+++- .+-...|+..|+.++++ .+++++......|..-.+.
T Consensus 39 ~~k~a~rai~Krl~~-~n~~~ql~AL~LLe~~vkNc-G~~f~~evas~~Fl~el~~l~~~-~~~~Vk~kil~li~~W~~~ 115 (140)
T 3ldz_A 39 GPKDCLRSIMRRVNH-KDPHVAMQALTLLGACVSNC-GKIFHLEVCSRDFASEVSNVLNK-GHPKVCEKLKALMVEWTDE 115 (140)
T ss_dssp HHHHHHHHHHHHHTC-SSHHHHHHHHHHHHHHHHHS-CHHHHHHHSSHHHHHHHHHHHHH-SCHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHcC-CChHHHHHHHHHHHHHHHhc-CHHHHHHHhhHHHHHHHHHHhcc-CCHHHHHHHHHHHHHHHHH
Confidence 444455666667777 47888888876553333222 12211 23345677778877754 3456655554444444443
Q ss_pred C
Q psy1198 200 L 200 (249)
Q Consensus 200 t 200 (249)
+
T Consensus 116 f 116 (140)
T 3ldz_A 116 F 116 (140)
T ss_dssp H
T ss_pred h
Confidence 3
No 153
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=21.48 E-value=35 Score=28.58 Aligned_cols=23 Identities=35% Similarity=0.527 Sum_probs=17.6
Q ss_pred CCCccceeccCCCCCchhhhhhh
Q psy1198 33 QGGKAATLYGAPGGGKAATLYAQ 55 (249)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~ 55 (249)
...+..-|||.||.||.....+-
T Consensus 52 ~~~~~vll~Gp~GtGKT~la~~l 74 (297)
T 3b9p_A 52 APAKGLLLFGPPGNGKTLLARAV 74 (297)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHH
T ss_pred CCCCeEEEECcCCCCHHHHHHHH
Confidence 34567889999999998765544
No 154
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=21.40 E-value=41 Score=31.68 Aligned_cols=25 Identities=40% Similarity=0.535 Sum_probs=18.4
Q ss_pred CCCCCccceeccCCCCCchhhhhhh
Q psy1198 31 GGQGGKAATLYGAPGGGKAATLYAQ 55 (249)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~ 55 (249)
|-.--|..-|||.||.||.....|-
T Consensus 178 gi~~prGvLL~GPPGTGKTllAkAi 202 (405)
T 4b4t_J 178 GIAQPKGVILYGPPGTGKTLLARAV 202 (405)
T ss_dssp TCCCCCCEEEESCSSSSHHHHHHHH
T ss_pred CCCCCCceEEeCCCCCCHHHHHHHH
Confidence 4445577889999999997655443
No 155
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=21.34 E-value=31 Score=28.73 Aligned_cols=24 Identities=25% Similarity=0.194 Sum_probs=17.8
Q ss_pred CCCCCccceeccCCCCCchhhhhh
Q psy1198 31 GGQGGKAATLYGAPGGGKAATLYA 54 (249)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~ 54 (249)
+....+..-|||.||.||.....+
T Consensus 60 ~~~~~~~vLl~G~~GtGKT~la~~ 83 (272)
T 1d2n_A 60 DRTPLVSVLLEGPPHSGKTALAAK 83 (272)
T ss_dssp SSCSEEEEEEECSTTSSHHHHHHH
T ss_pred CCCCCeEEEEECCCCCcHHHHHHH
Confidence 345566788999999999765443
No 156
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=20.90 E-value=33 Score=27.39 Aligned_cols=26 Identities=31% Similarity=0.436 Sum_probs=20.8
Q ss_pred hhhCCCCCCccceeccCCCCCchhhh
Q psy1198 27 ATSGGGQGGKAATLYGAPGGGKAATL 52 (249)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 52 (249)
.+.||=+-|....++|.||.||..-.
T Consensus 22 ~l~GGl~~G~l~~i~G~pG~GKT~l~ 47 (251)
T 2zts_A 22 LIEGGFPEGTTVLLTGGTGTGKTTFA 47 (251)
T ss_dssp GTTTSEETTCEEEEECCTTSSHHHHH
T ss_pred hhcCCCCCCeEEEEEeCCCCCHHHHH
Confidence 34566678889999999999998643
No 157
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=20.72 E-value=40 Score=28.96 Aligned_cols=23 Identities=17% Similarity=0.157 Sum_probs=17.0
Q ss_pred CCCCCccceeccCCCCCchhhhh
Q psy1198 31 GGQGGKAATLYGAPGGGKAATLY 53 (249)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~ 53 (249)
+....+..-|||.||.||.....
T Consensus 32 ~~~~p~~lLl~GppGtGKT~la~ 54 (293)
T 3t15_A 32 NIKVPLILGIWGGKGQGKSFQCE 54 (293)
T ss_dssp TCCCCSEEEEEECTTSCHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHH
Confidence 44455677899999999976544
No 158
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=20.67 E-value=3.9e+02 Score=28.01 Aligned_cols=73 Identities=18% Similarity=0.233 Sum_probs=49.6
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHh----c
Q psy1198 124 TKAQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHNFDMMNNACRALTYMME----A 199 (249)
Q Consensus 124 ~rl~~Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIas----g 199 (249)
..+++++..+.+ +++..+-+|.+.|.++- +. ....+.+..+|....++++++.|+-.|.|... .
T Consensus 28 ~~Le~lv~~ly~-p~~~~r~qA~~~L~q~q----~s-------p~aw~~~~~iL~~s~~~~vR~fAa~~L~~~I~~~W~~ 95 (1073)
T 3gjx_A 28 NLLDNVVNCLYH-GEGAQQRMAQEVLTHLK----EH-------PDAWTRVDTILEFSQNMNTKYYGLQILENVIKTRWKI 95 (1073)
T ss_dssp HHHHHHHHTTTC-SSHHHHHHHHHHHHTSS----CC-------SCHHHHHTCC---CCSHHHHHHHHHHHHHHHHHTGGG
T ss_pred HHHHHHHHHHhC-CCHHHHHHHHHHHHHHH----cC-------chHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhhh
Confidence 568888988887 47776666766664421 11 14567778888887889999999999998876 4
Q ss_pred CchhHHHHh
Q psy1198 200 LPRSSAVVL 208 (249)
Q Consensus 200 tp~qT~~VV 208 (249)
+|+.-...+
T Consensus 96 L~~e~~~~L 104 (1073)
T 3gjx_A 96 LPRNQCEGI 104 (1073)
T ss_dssp SCHHHHHHH
T ss_pred CCHHHHHHH
Confidence 565555544
No 159
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=20.39 E-value=45 Score=28.31 Aligned_cols=20 Identities=40% Similarity=0.514 Sum_probs=16.2
Q ss_pred CCccceeccCCCCCchhhhh
Q psy1198 34 GGKAATLYGAPGGGKAATLY 53 (249)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~ 53 (249)
.+....+||.||.||...+.
T Consensus 43 ~~~~vll~G~~G~GKT~l~~ 62 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAVAR 62 (387)
T ss_dssp CCCCEEECBCTTSSHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHH
Confidence 45678899999999987654
Done!