RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy1198
(249 letters)
>gnl|CDD|237537 PRK13875, PRK13875, conjugal transfer protein TrbL; Provisional.
Length = 440
Score = 41.0 bits (97), Expect = 3e-04
Identities = 30/108 (27%), Positives = 44/108 (40%), Gaps = 4/108 (3%)
Query: 8 GGGVGGGGHHNSGSAAAAAATSGGGQGGKAATLYGAPGGGKAATLYAQSGMSAGETQGGS 67
G GGG G+AAAA + G +A GA GG AA +G+ G S
Sbjct: 293 GLAAGGGAAAAGGAAAAARGGAAAAGGASSAYSAGAAGGSGAAG--VAAGLGGVARAGAS 350
Query: 68 VAGEEDKNA--GAQGSTSTSGAASGTASTSLLSGVASSSSGPSHAPGA 113
A + A A S +S A ++ G A++++ + A G
Sbjct: 351 AAASPLRRAASRAAESMKSSFRAGARSTGGGAGGAAAAAAAGAAAAGP 398
Score = 37.2 bits (87), Expect = 0.006
Identities = 34/120 (28%), Positives = 43/120 (35%), Gaps = 12/120 (10%)
Query: 7 GGGGVGGGGHHNSGSAAAAAATSGGGQGGKAATLYGAPGGGKAATLYAQSGMSA------ 60
G G G G G+A AAAA +G GG AA GA + A SA
Sbjct: 270 GAGAAVGTGLAAGGAAVAAAAGAGLAAGGGAAAAGGAAAAARGGAAAAGGASSAYSAGAA 329
Query: 61 GETQGGSVAGEEDKNAGAQGSTSTSGAASGTAS------TSLLSGVASSSSGPSHAPGAA 114
G + VA A A S + S + +S +G S+ G A AA
Sbjct: 330 GGSGAAGVAAGLGGVARAGASAAASPLRRAASRAAESMKSSFRAGARSTGGGAGGAAAAA 389
Score = 35.7 bits (83), Expect = 0.020
Identities = 29/124 (23%), Positives = 41/124 (33%), Gaps = 8/124 (6%)
Query: 7 GGGGVGGGGHHNSGSAAAAAATSGGGQGGKAATLYGAPGGGKAA---TLYAQSGMSAGET 63
GG +G AA A + GG A A GG +A SG +
Sbjct: 280 AAGGAAVAAAAGAGLAAGGGAAAAGGAAAAARGGAAAAGGASSAYSAGAAGGSGAAGVAA 339
Query: 64 QGGSVAGEEDKNAGAQGSTSTSGAASGTASTSLLSGVASSSSGPSHAPGAALDSESEDTA 123
G VA AGA + S A+ A+ S+ S + + G A + + A
Sbjct: 340 GLGGVAR-----AGASAAASPLRRAASRAAESMKSSFRAGARSTGGGAGGAAAAAAAGAA 394
Query: 124 TKAQ 127
Sbjct: 395 AAGP 398
Score = 33.7 bits (78), Expect = 0.076
Identities = 30/106 (28%), Positives = 42/106 (39%), Gaps = 2/106 (1%)
Query: 9 GGVGGGGHHNSGSAAAAAATSGGGQGGKAATLYGAPGGGKAATLYAQSGMSAGETQGGSV 68
G V G +G+A +GG AA A GGG AA A + G G
Sbjct: 261 GLVSGAPQLGAGAAVGTGLAAGGAAVAAAAGAGLAAGGGAAAAGGAAAAARGGAAAAGGA 320
Query: 69 AGEEDKNAGAQGSTSTSGAASGTASTSLLSGVASSSSGPSHAPGAA 114
+ +AGA G + +G A+G + A++S A AA
Sbjct: 321 SSA--YSAGAAGGSGAAGVAAGLGGVARAGASAAASPLRRAASRAA 364
Score = 32.6 bits (75), Expect = 0.17
Identities = 34/121 (28%), Positives = 45/121 (37%), Gaps = 14/121 (11%)
Query: 20 GSAAAAAATSGG---GQGGKAATLYGAPGGGKAATLYAQSGMSAGETQGGSVAGEEDKNA 76
G A SG G G T A G AA A G G A A
Sbjct: 255 GPGIANGLVSGAPQLGAGAAVGTGLAAGGAAVAAAAGAGLAAGGGAAAAGGAA------A 308
Query: 77 GAQGSTSTSGAAS-----GTASTSLLSGVASSSSGPSHAPGAALDSESEDTATKAQQLLV 131
A+G + +G AS G A S +GVA+ G + A +A S A++A + +
Sbjct: 309 AARGGAAAAGGASSAYSAGAAGGSGAAGVAAGLGGVARAGASAAASPLRRAASRAAESMK 368
Query: 132 S 132
S
Sbjct: 369 S 369
Score = 31.8 bits (73), Expect = 0.32
Identities = 28/110 (25%), Positives = 47/110 (42%), Gaps = 7/110 (6%)
Query: 1 RRSSSRGGGGVGGGGHHNSGSAAAAAATSGGGQGGKAATLYGAPGGGKAATLYAQSGMSA 60
++ GG G+++A +A + GG G A G G A A + S
Sbjct: 300 AAAAGGAAAAARGGAAAAGGASSAYSAGAAGGSGAAGV----AAGLGGVARAGASAAASP 355
Query: 61 GETQGGSVAGEEDKNAGAQGSTSTSGAASGTASTSLLSGVASSSSGPSHA 110
+ S A E K++ G+ ST G A G A+ + + A+++ P+ A
Sbjct: 356 LR-RAASRAAESMKSSFRAGARSTGGGAGGAAAAA--AAGAAAAGPPAWA 402
>gnl|CDD|240430 PTZ00473, PTZ00473, Plasmodium Vir superfamily; Provisional.
Length = 420
Score = 36.7 bits (85), Expect = 0.008
Identities = 24/124 (19%), Positives = 38/124 (30%), Gaps = 20/124 (16%)
Query: 1 RRSSSRGGGGVGGGGHHNS-GSAAAAAATSGGGQGGKAATLYGAPGGGKAATLYAQSGMS 59
RR G G + N G + + +G + + T
Sbjct: 304 RRRWRNMGHDSRGPYNANYGGQFNSRSGRTGSSESIRGFTYDS----------------- 346
Query: 60 AGETQGGSVAGEEDKNAGAQ-GSTSTSGAASGTASTSLLSGVASSSSGPSHAPGAALDSE 118
T GGS G ++ + GS ST +++G S S SS + + DS
Sbjct: 347 -STTYGGSSYGTSQTDSTSTYGSRSTFDSSTGGGSQSGGGSTYGGSSTFDGSSRGSSDSF 405
Query: 119 SEDT 122
Sbjct: 406 GVSY 409
>gnl|CDD|226365 COG3846, TrbL, Type IV secretory pathway, TrbL components
[Intracellular trafficking and secretion].
Length = 452
Score = 35.1 bits (81), Expect = 0.029
Identities = 25/128 (19%), Positives = 32/128 (25%), Gaps = 7/128 (5%)
Query: 8 GGGVGGGGHHNSGSAAAAAATSGGGQGGKAATLYGAPGGGKAATLYAQSGMSAGETQGGS 67
G G G G S A AA + G G A A T A + SA +
Sbjct: 288 GAGAVGAGVAISLKATGAAGAALAGARGATAGASLASSVTALGTSMASAAASAFASGRKG 347
Query: 68 VAGEEDKNAGAQGSTSTSGAASG-------TASTSLLSGVASSSSGPSHAPGAALDSESE 120
A G + GA + T + + S AA S
Sbjct: 348 SGSGAFGTAAGVGDVKSPGAKAAMRTLGRAAGDTGVSVASGVGQAPKSAGGSAAGKSAVA 407
Query: 121 DTATKAQQ 128
Sbjct: 408 KATGVQAA 415
>gnl|CDD|235906 PRK07003, PRK07003, DNA polymerase III subunits gamma and tau;
Validated.
Length = 830
Score = 34.1 bits (78), Expect = 0.070
Identities = 24/121 (19%), Positives = 39/121 (32%), Gaps = 3/121 (2%)
Query: 7 GGGGVGGGGHHNSGSAAAAAATSGGGQGGKAATLYGAPGGGKAATLYAQSGMSAGETQGG 66
GG GG +G+ A A + G A A G A L ++ +A T+
Sbjct: 365 GGAPGGGVPARVAGAVPAPGARAAAAVGASAVPAVTAVTGAAGAALAPKAAAAAAATRAE 424
Query: 67 SVAGEEDKNAGAQGSTSTSGAASGTASTSLLSGVASSSSGPSHAPGAALDSESEDTATKA 126
+ A + AA G A + +S+ A ++S + A
Sbjct: 425 APPAAP---APPATADRGDDAADGDAPVPAKANARASADSRCDERDAQPPADSGSASAPA 481
Query: 127 Q 127
Sbjct: 482 S 482
Score = 28.7 bits (64), Expect = 3.5
Identities = 23/102 (22%), Positives = 35/102 (34%)
Query: 22 AAAAAATSGGGQGGKAATLYGAPGGGKAATLYAQSGMSAGETQGGSVAGEEDKNAGAQGS 81
A GGG + A APG AA + A + + G + A K A A +
Sbjct: 361 AVTGGGAPGGGVPARVAGAVPAPGARAAAAVGASAVPAVTAVTGAAGAALAPKAAAAAAA 420
Query: 82 TSTSGAASGTASTSLLSGVASSSSGPSHAPGAALDSESEDTA 123
T + A + ++ G + P A S D+
Sbjct: 421 TRAEAPPAAPAPPATADRGDDAADGDAPVPAKANARASADSR 462
>gnl|CDD|240324 PTZ00234, PTZ00234, variable surface protein Vir12; Provisional.
Length = 433
Score = 33.8 bits (77), Expect = 0.075
Identities = 24/120 (20%), Positives = 41/120 (34%), Gaps = 16/120 (13%)
Query: 2 RSSSRGGGGVGGGGHHNSGSAAAAAATSGGGQGGKAATLYGAPGGGKAATLYAQSGMSAG 61
+ S+ G +S A + S G Q + +PGG SAG
Sbjct: 226 QGSNGSQSSFLGWFWGSSSPKTAPSKGSPGAQEPAKTAVVKSPGGIP----------SAG 275
Query: 62 ETQGGSVAGEEDKNAGAQGSTSTSGAASGTASTSLLSGVASSSSGPSHAPGAALDSESED 121
+ G+ +K + + + +GT + V + G S A G + S+D
Sbjct: 276 GKRAGAEGAGANKGLASVAPSQSREVLNGTQNP-----VPVAPLGSSQA-GVHMPHGSKD 329
>gnl|CDD|182974 PRK11115, PRK11115, transcriptional regulator PhoU; Provisional.
Length = 236
Score = 32.7 bits (75), Expect = 0.12
Identities = 29/101 (28%), Positives = 41/101 (40%), Gaps = 21/101 (20%)
Query: 113 AALDSESEDTATKAQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPA 172
AL+ S + Q LLVSL+++G + QML D L F + +
Sbjct: 112 TALEKFS----QQHQPLLVSLESLGR-----HTI----QML----HDVLDAF-ARMDLDE 153
Query: 173 LITLLSMDHNFDMMNNA-CRAL-TYMMEALPRSSAVVLDAV 211
+ + D D R L TYMME PR+ VL +
Sbjct: 154 AVRIYREDKKVDQEYEGIVRQLMTYMMED-PRTIPSVLTVL 193
>gnl|CDD|180700 PRK06800, fliH, flagellar assembly protein H; Validated.
Length = 228
Score = 32.2 bits (73), Expect = 0.19
Identities = 30/117 (25%), Positives = 47/117 (40%), Gaps = 12/117 (10%)
Query: 113 AALDSESEDTATKAQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTL----TGFPVKQ 168
L ++ + + QL Q + E QQL A E Q V + F +Q
Sbjct: 41 EELLAQQKSLHKELNQLRQEQQKLERERQQLLADREQFQEHVQQQMKEIEAARQQFQKEQ 100
Query: 169 VVPAL-ITLLSMDHNFDM----MNNACRALTYMMEALPRSSAVVLDAVPTFLEKLQV 220
A T L D +F + +N A T +++ LP + +V +PT EKL +
Sbjct: 101 QETAYEWTELLWDQSFQLAEKIVNQAVD--TRLLDVLPILTGIV-QTLPTSFEKLNI 154
>gnl|CDD|180777 PRK06958, PRK06958, single-stranded DNA-binding protein;
Provisional.
Length = 182
Score = 31.7 bits (72), Expect = 0.19
Identities = 19/46 (41%), Positives = 21/46 (45%), Gaps = 3/46 (6%)
Query: 5 SRGGGGVGGGGHHNS---GSAAAAAATSGGGQGGKAATLYGAPGGG 47
GGGG GGG S G A+ GGG GG A+ GGG
Sbjct: 127 GGGGGGGGGGYGGESRSGGGGGRASGGGGGGAGGGASRPSAPAGGG 172
Score = 30.1 bits (68), Expect = 0.68
Identities = 19/45 (42%), Positives = 21/45 (46%)
Query: 3 SSSRGGGGVGGGGHHNSGSAAAAAATSGGGQGGKAATLYGAPGGG 47
GGGG G GG SG A+ GGG G A+ AP GG
Sbjct: 127 GGGGGGGGGGYGGESRSGGGGGRASGGGGGGAGGGASRPSAPAGG 171
Score = 28.6 bits (64), Expect = 2.6
Identities = 18/69 (26%), Positives = 24/69 (34%), Gaps = 3/69 (4%)
Query: 5 SRGGGGVGGGGHHNSGSAAAAAATSGGGQGGKAATLYGAPGGGKAATLYAQSGMSAGETQ 64
RGG G GGGG G GG G + G GG + +G A
Sbjct: 110 GRGGSGGGGGGGDEGGYGGGGGGGGGGYGGESRS---GGGGGRASGGGGGGAGGGASRPS 166
Query: 65 GGSVAGEED 73
+ G ++
Sbjct: 167 APAGGGFDE 175
Score = 27.5 bits (61), Expect = 4.7
Identities = 21/61 (34%), Positives = 24/61 (39%), Gaps = 5/61 (8%)
Query: 2 RSSSRGGGGVG-----GGGHHNSGSAAAAAATSGGGQGGKAATLYGAPGGGKAATLYAQS 56
R S GGGG G GGG G + SGGG G + G GGG +
Sbjct: 111 RGGSGGGGGGGDEGGYGGGGGGGGGGYGGESRSGGGGGRASGGGGGGAGGGASRPSAPAG 170
Query: 57 G 57
G
Sbjct: 171 G 171
>gnl|CDD|185641 PTZ00462, PTZ00462, Serine-repeat antigen protein; Provisional.
Length = 1004
Score = 32.7 bits (74), Expect = 0.21
Identities = 29/130 (22%), Positives = 49/130 (37%), Gaps = 26/130 (20%)
Query: 7 GGGGVGGGGHHNSGSAAAAAATSGGGQGGKAATLYGA----PGGGKAATLYAQSGMSAGE 62
GGG GG G N+G+ G G A ++ + P A L + E
Sbjct: 34 GGGQAGGTGGDNAGN------IDGSPIGNLDANIHASFGADPKESSGANLPGKKEKKKKE 87
Query: 63 TQGGSVAGEEDKNAGAQGSTSTSGAASGTASTSLLS---GVASSSSGPSH-------APG 112
+G + N+ +Q S+S + ++LL G+ +GP + P
Sbjct: 88 IRGHDIM----SNSDSQNSSSIEKQDNIQIKSALLKDNKGL--KITGPCNENFIIFLVPH 141
Query: 113 AALDSESEDT 122
+D ++ED
Sbjct: 142 IYIDVDTEDN 151
>gnl|CDD|224346 COG1429, CobN, Cobalamin biosynthesis protein CobN and related
Mg-chelatases [Coenzyme metabolism].
Length = 1388
Score = 32.4 bits (74), Expect = 0.22
Identities = 20/112 (17%), Positives = 32/112 (28%), Gaps = 5/112 (4%)
Query: 20 GSAAAAAATSGGGQGGKAATLYGAPGGGKA--ATLYAQSGMSAG-ETQGGSVAGEEDKNA 76
G A L PG + A YA + +A A E
Sbjct: 1249 GVACCHHTCGNPALDEWVLGLVSVPGVPELVEAATYAATRYAAFAPASATPGAPE--SVG 1306
Query: 77 GAQGSTSTSGAASGTASTSLLSGVASSSSGPSHAPGAALDSESEDTATKAQQ 128
ST++S +++ + SG S+ A E + +A
Sbjct: 1307 TTAVSTASSASSATVTGSDAGSGADSTGPSLGAAGSVTGAGEGYEMTKEAVS 1358
>gnl|CDD|129050 smart00814, Alpha_TIF, Alpha trans-inducing protein (Alpha-TIF).
Alpha-TIF (VP16) from Herpes Simplex virus is an
essential tegument protein involved in the
transcriptional activation of viral immediate early (IE)
promoters (alpha genes) during the lytic phase of viral
infection. VP16 associates with cellular transcription
factors to enhance transcription rates, including the
general transcription factor TFIIB and the
transcriptional coactivator PC4. The N-terminal residues
of VP16 confer specificity for the IE genes, while the
C-terminal residues are responsible for transcriptional
activation. Within the C-terminal region are two
activation regions that can independently and
cooperatively activate transcription. VP16 forms a
transcriptional regulatory complex with two cellular
proteins, the POU-domain transcription factor Oct-1 and
the cell-proliferation factor HCF-1. VP16 is an
alpha/beta protein with an unusual fold. Other
transcription factors may have a similar topology.
Length = 356
Score = 31.6 bits (72), Expect = 0.40
Identities = 23/95 (24%), Positives = 33/95 (34%), Gaps = 18/95 (18%)
Query: 86 GAASGTASTSLLSGVASSSSGPSHAPGAALDSESEDTATKAQQLLVSLQAIGDEDQQLQA 145
GAA+ + S + P A AAL Q+LL L E L +
Sbjct: 6 GAAALVYAPGYPSSAQLALPPPRPASPAAL----------YQRLLTELGF--AEGPALLS 53
Query: 146 VVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMD 180
+E NED + FP + + +LS
Sbjct: 54 ALETW------NEDLFSCFPTNEDLYREAKILSTS 82
>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau;
Validated.
Length = 824
Score = 31.5 bits (72), Expect = 0.47
Identities = 21/119 (17%), Positives = 36/119 (30%), Gaps = 5/119 (4%)
Query: 10 GVGGGGHHNSGSAAAAAATSGGGQGGKAATLYGAPGGGKAATLYAQSGMSAGETQGGSVA 69
+G G + +AAA +A + A A A A +
Sbjct: 384 RLGVAGGAGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPS 443
Query: 70 GEEDKNAGAQGSTSTSGAASGT-----ASTSLLSGVASSSSGPSHAPGAALDSESEDTA 123
+ AG S + A S A+ + + + + AP AA + + A
Sbjct: 444 PAGNAPAGGAPSPPPAAAPSAQPAPAPAAAPEPTAAPAPAPPAAPAPAAAPAAPAAPAA 502
>gnl|CDD|147458 pfam05268, GP38, Phage tail fibre adhesin Gp38. This family
contains several Gp38 proteins from T-even-like phages.
Gp38, together with a second phage protein, gp57,
catalyzes the organisation of gp37 but is absent from
the phage particle. Gp37 is responsible for receptor
recognition.
Length = 261
Score = 30.9 bits (70), Expect = 0.56
Identities = 26/92 (28%), Positives = 33/92 (35%), Gaps = 4/92 (4%)
Query: 7 GGGGVGGGGHHNSGSAAAAAATSGGGQGGKAATLYGAPGGGKAATLYAQSGMSAGETQGG 66
GGGG GGG + GGG+ A G+ G A+L A G S + G
Sbjct: 153 GGGGGGGGASLKNSWRGNGVCGGGGGRPFGAGGKSGSHMSGGNASLTAPGGGSGTGSAYG 212
Query: 67 SVAGEEDKNAGAQG----STSTSGAASGTAST 94
G AG + G A+G A
Sbjct: 213 GGNGGNVGAAGGRAWGGNGYEYGGGAAGYAVI 244
Score = 28.2 bits (63), Expect = 3.9
Identities = 21/72 (29%), Positives = 26/72 (36%), Gaps = 11/72 (15%)
Query: 7 GGGG--VGGGGHHNSGSAAAAAATSGGGQGGKAATLYGAPGGGKAA---------TLYAQ 55
GGGG G GG S + A+ + G G + YG GG Y
Sbjct: 175 GGGGRPFGAGGKSGSHMSGGNASLTAPGGGSGTGSAYGGGNGGNVGAAGGRAWGGNGYEY 234
Query: 56 SGMSAGETQGGS 67
G +AG GS
Sbjct: 235 GGGAAGYAVIGS 246
>gnl|CDD|237284 PRK13108, PRK13108, prolipoprotein diacylglyceryl transferase;
Reviewed.
Length = 460
Score = 30.7 bits (69), Expect = 0.69
Identities = 20/130 (15%), Positives = 35/130 (26%), Gaps = 6/130 (4%)
Query: 21 SAAAAAATSGGGQ--GGKAATLYGAPGGGKAATLYAQSGMSAGETQGGSVAGEEDKNAGA 78
SAA+A G G+ + A + + G ++ + A
Sbjct: 310 SAASAVGPVGPGEPNQPDDVAEAVKAEVAEVTDEVAAESVVQVADRDGESTPAVEETSEA 369
Query: 79 QGSTSTSGAASGTASTSLLSGVASSSSGPSHAPGAALDSESEDTATKAQQLLVSLQAIGD 138
G +G A + + S AP SE ++ I D
Sbjct: 370 DIEREQPGDLAGQAPAA----HQVDAEAASAAPEEPAALASEAHDETEPEVPEKAAPIPD 425
Query: 139 EDQQLQAVVE 148
+ + V
Sbjct: 426 PAKPDELAVA 435
>gnl|CDD|237529 PRK13841, PRK13841, conjugal transfer protein TrbL; Provisional.
Length = 391
Score = 30.6 bits (69), Expect = 0.80
Identities = 32/110 (29%), Positives = 38/110 (34%), Gaps = 7/110 (6%)
Query: 8 GGGVGGG------GHHNSGSAAAAAATSGGGQGGKAATLYGAPGGGKAATLYAQSGMSAG 61
G V GG G + AA AA + G G A A GG + A GM AG
Sbjct: 277 GASVSGGMEAIRHGGQAASFAAGAAFLAAGAAGAGFAAASAARAGGSSLAGAALRGMGAG 336
Query: 62 ETQGGSVAGEEDKNAGAQGSTSTSGAASGTASTSLLSGVASSSSGPSHAP 111
GS AG K A GS + + + L S P P
Sbjct: 337 IGSAGSAAGSAAKEK-AIGSPGAYAGSLLGLANAKLDQQRGGPSAPPPPP 385
>gnl|CDD|236092 PRK07772, PRK07772, single-stranded DNA-binding protein;
Provisional.
Length = 186
Score = 30.0 bits (68), Expect = 0.82
Identities = 22/61 (36%), Positives = 27/61 (44%), Gaps = 2/61 (3%)
Query: 1 RRSSSRGGGGVGGGGHHNSGSAAAAAATSGGGQGGKAATLYGAPGGGKAATLYAQSGMSA 60
R+S GGGG GGGG G + GGG GG A GA A ++ + S
Sbjct: 118 TRASRGGGGGGGGGGF--GGGGGGSGGGGGGGGGGGAPGGGGAQASAPADDPWSSAPASG 175
Query: 61 G 61
G
Sbjct: 176 G 176
Score = 29.6 bits (67), Expect = 1.2
Identities = 22/64 (34%), Positives = 26/64 (40%), Gaps = 2/64 (3%)
Query: 4 SSRGGGGVGGGGHHNSGSAAAAAATSGGGQGGKAATLYGAPGGGKAATLYAQSGMSAGET 63
+SRGGGG GGGG G + GGG GG G A S ++G
Sbjct: 120 ASRGGGGGGGGGGFGGGGGGSGGGGGGGGGGGAPGG--GGAQASAPADDPWSSAPASGGF 177
Query: 64 QGGS 67
GG
Sbjct: 178 GGGD 181
>gnl|CDD|237657 PRK14281, PRK14281, chaperone protein DnaJ; Provisional.
Length = 397
Score = 30.2 bits (68), Expect = 0.99
Identities = 28/79 (35%), Positives = 31/79 (39%), Gaps = 12/79 (15%)
Query: 15 GHHNSGSAAAAAATSGGGQGGKAATLYGAPGGGKAATLYAQSGMSAGETQ--GGSVAGEE 72
GH GS+AA SGGG G YG GG A + M G + GGS G E
Sbjct: 69 GHAGVGSSAA----SGGGPG------YGGGGGDFNDIFSAFNDMFGGGARRGGGSPFGFE 118
Query: 73 DKNAGAQGSTSTSGAASGT 91
D G S GT
Sbjct: 119 DVFGGGGRRRRASAGIPGT 137
>gnl|CDD|177931 PLN02294, PLN02294, cytochrome c oxidase subunit Vb.
Length = 174
Score = 29.4 bits (66), Expect = 1.2
Identities = 23/73 (31%), Positives = 30/73 (41%)
Query: 76 AGAQGSTSTSGAASGTASTSLLSGVASSSSGPSHAPGAALDSESEDTATKAQQLLVSLQA 135
A + + S T LS SS S S SES DTA K + V A
Sbjct: 14 AASVVAASPRRTVVATTRPLYLSRSRSSISASSSVFSRYFSSESADTAVKKRVEDVMPIA 73
Query: 136 IGDEDQQLQAVVE 148
G E ++L+A +E
Sbjct: 74 TGHEREELEAELE 86
>gnl|CDD|183072 PRK11280, PRK11280, hypothetical protein; Provisional.
Length = 170
Score = 29.2 bits (66), Expect = 1.3
Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 7/54 (12%)
Query: 16 HHNSGSAAAAAATS------GGGQGGKAATLYGAPGGGKAATLYAQSGMSAGET 63
+ +GS A A GGG+G AT+ GA GGG A Q GM +T
Sbjct: 63 NRIAGSVLGAVAGGVLGHQFGGGRGKDVATVAGALGGGYAGN-QIQGGMQERDT 115
>gnl|CDD|140324 PTZ00303, PTZ00303, phosphatidylinositol kinase; Provisional.
Length = 1374
Score = 29.7 bits (66), Expect = 1.7
Identities = 15/47 (31%), Positives = 21/47 (44%), Gaps = 2/47 (4%)
Query: 2 RSSSRGGGGVGGGGHHNSGSAAAAAATSGG--GQGGKAATLYGAPGG 46
R R +GG + ++G AA A G G+GG +A GG
Sbjct: 386 RLRGRPSSSIGGNANSSTGGNGAAGAGGAGAAGKGGGSAAARATVGG 432
Score = 28.9 bits (64), Expect = 3.2
Identities = 36/139 (25%), Positives = 55/139 (39%), Gaps = 29/139 (20%)
Query: 1 RRSSSRGGGGVGGGGHHNSGSAAAAAATSGGGQGGKAATLYGAPGGGKAATLYAQSGMSA 60
RR ++ GG VG G G AAAAAT+G G A + GA G + + + +++
Sbjct: 105 RRGANTSGGTVGSGRCGVHGDPAAAAATAGSCGAGGAVSGSGAIHSG-VSGIPSMCCLNS 163
Query: 61 GETQGG-------------------------SVAGEEDKNAGAQGSTSTSGAASGTASTS 95
GG SVA D N QG+++ + AAS +A +
Sbjct: 164 CSPAGGPVPRKLEETLRETLSENSDFFFRVSSVAYHLDPN--PQGASACT-AASASAGSG 220
Query: 96 LLSGVASSSSGPSHAPGAA 114
++ + P G A
Sbjct: 221 VMGNAGVGARSPRRGEGLA 239
>gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat. Approx. 40
amino acid repeat. Tandem repeats form super-helix of
helices that is proposed to mediate interaction of
beta-catenin with its ligands. CAUTION: This family does
not contain all known armadillo repeats.
Length = 41
Score = 26.3 bits (59), Expect = 1.9
Identities = 9/28 (32%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Query: 169 VVPALITLLSMDHNFDMMNNACRALTYM 196
VP L+ LLS + ++ A AL+ +
Sbjct: 13 AVPPLVQLLS-SPDEEVQEEAAWALSNL 39
>gnl|CDD|217902 pfam04111, APG6, Autophagy protein Apg6. In yeast, 15 Apg proteins
coordinate the formation of autophagosomes. Autophagy is
a bulk degradation process induced by starvation in
eukaryotic cells. Apg6/Vps30p has two distinct functions
in the autophagic process, either associated with the
membrane or in a retrieval step of the carboxypeptidase
Y sorting pathway.
Length = 356
Score = 29.1 bits (65), Expect = 2.0
Identities = 12/39 (30%), Positives = 20/39 (51%)
Query: 113 AALDSESEDTATKAQQLLVSLQAIGDEDQQLQAVVEMCQ 151
ALDSE ++ + ++LL L+ + ED L + Q
Sbjct: 66 EALDSELDELKKEEERLLDELEELEKEDDDLDGELVELQ 104
>gnl|CDD|236782 PRK10871, nlpD, lipoprotein NlpD; Provisional.
Length = 319
Score = 29.0 bits (65), Expect = 2.2
Identities = 20/99 (20%), Positives = 36/99 (36%), Gaps = 8/99 (8%)
Query: 9 GGVGGGGHHNSGSAAAAAATSGGGQGGKAATLYGAPGGGKAATLYAQSGMSAGETQGGSV 68
G G + A A G + P + +Q ++ E+ G
Sbjct: 106 GNASGTPITGGNAITQADAAEQG--------VVIKPAQNSTVAVASQPTITYSESSGEQS 157
Query: 69 AGEEDKNAGAQGSTSTSGAASGTASTSLLSGVASSSSGP 107
A + N +T T+ + TAST+ + ++S+S P
Sbjct: 158 ANKMLPNNKPAATTVTAPVTAPTASTTEPTASSTSTSTP 196
>gnl|CDD|181425 PRK08441, oorC, 2-oxoglutarate-acceptor oxidoreductase subunit
OorC; Reviewed.
Length = 183
Score = 28.5 bits (64), Expect = 2.3
Identities = 14/30 (46%), Positives = 16/30 (53%)
Query: 10 GVGGGGHHNSGSAAAAAATSGGGQGGKAAT 39
GVGG G +G A A GG G KA+T
Sbjct: 9 GVGGQGVLLAGEILAEAKIKAGGYGVKAST 38
>gnl|CDD|234519 TIGR04244, nitrous_NosZ_RR, nitrous-oxide reductase,
TAT-dependent. Members of this family are the
nitrous-oxide reductase structural protein, NosZ, with
an N-terminal twin-arginine translocation (TAT) signal
sequence (see TIGR01409). The TAT system replaces the
Sec system for export of proteins with bound cofactor.
Length = 627
Score = 28.9 bits (65), Expect = 2.5
Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 6/48 (12%)
Query: 1 RRS---SSRGGGGVGGGGHHNSGSAAAAAATSGGGQGGKAATLYGAPG 45
RR ++ G G G +G+AAAAAA + GK APG
Sbjct: 4 RRGFLGTAALAGLAGAGAAGAAGAAAAAAAAAAAAAAGKYHV---APG 48
>gnl|CDD|226625 COG4145, PanF, Na+/panthothenate symporter [Coenzyme metabolism].
Length = 473
Score = 28.9 bits (65), Expect = 2.5
Identities = 18/87 (20%), Positives = 37/87 (42%), Gaps = 2/87 (2%)
Query: 159 DTLTGFPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEALPRSSAVVLDAVPTFLEKL 218
DT+ G + ++ ++ + + + ++NA LT + L P F+
Sbjct: 183 DTIQGLVM--LIGTVVLFVGVIYAGGGLSNAVETLTTIDPGLVTPQGADDILDPPFMASF 240
Query: 219 QVIQCMDVAEQSLTALEMLSRRHSKAI 245
++ C V TA+ ++ + SKAI
Sbjct: 241 WILVCFGVLGLPHTAVRCIAFKDSKAI 267
>gnl|CDD|227244 COG4907, COG4907, Predicted membrane protein [Function unknown].
Length = 595
Score = 28.7 bits (64), Expect = 2.8
Identities = 14/33 (42%), Positives = 16/33 (48%), Gaps = 7/33 (21%)
Query: 3 SSSRGGGGVGGGGHHNSGSAAAAAATSGGGQGG 35
+SSR GGGG + G SGGG GG
Sbjct: 568 ASSRRSSSSGGGGGFSGGG-------SGGGGGG 593
>gnl|CDD|240291 PTZ00146, PTZ00146, fibrillarin; Provisional.
Length = 293
Score = 28.5 bits (64), Expect = 2.9
Identities = 16/46 (34%), Positives = 18/46 (39%)
Query: 7 GGGGVGGGGHHNSGSAAAAAATSGGGQGGKAATLYGAPGGGKAATL 52
G GG GGGG G G G+GG G GGG +
Sbjct: 13 GRGGGGGGGRGGGGRGGGRGGGRGRGRGGGGGGRGGGGGGGPGKVI 58
Score = 27.8 bits (62), Expect = 4.8
Identities = 16/43 (37%), Positives = 18/43 (41%)
Query: 6 RGGGGVGGGGHHNSGSAAAAAATSGGGQGGKAATLYGAPGGGK 48
G GG GGG G GGG+GG G GGG+
Sbjct: 4 GGFGGGRGGGRGGGGGGGRGGGGRGGGRGGGRGRGRGGGGGGR 46
>gnl|CDD|240274 PTZ00112, PTZ00112, origin recognition complex 1 protein;
Provisional.
Length = 1164
Score = 28.8 bits (64), Expect = 3.0
Identities = 14/28 (50%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
Query: 29 SGGGQGGKAATLY--GAPGGGKAATLYA 54
SG Q G LY G PG GK AT+Y+
Sbjct: 773 SGIKQSGSNQILYISGMPGTGKTATVYS 800
>gnl|CDD|233045 TIGR00601, rad23, UV excision repair protein Rad23. All proteins
in this family for which functions are known are
components of a multiprotein complex used for targeting
nucleotide excision repair to specific parts of the
genome. In humans, Rad23 complexes with the XPC protein.
This family is based on the phylogenomic analysis of JA
Eisen (1999, Ph.D. Thesis, Stanford University) [DNA
metabolism, DNA replication, recombination, and repair].
Length = 378
Score = 28.3 bits (63), Expect = 3.6
Identities = 31/127 (24%), Positives = 47/127 (37%), Gaps = 11/127 (8%)
Query: 79 QGSTSTSGAASGTASTSLLSGVASSSSGPSHAPGAAL--DSESEDTATKAQQLLVSLQAI 136
G + A +A T S AS +SG S AP +A+ S SE++AT S
Sbjct: 81 TGKVAPPAATPTSAPTPTPSPPASPASGMSAAPASAVEEKSPSEESATATAPESPSTSVP 140
Query: 137 GDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHNFDMMNNACRALTYM 196
+V + E G+ ++V AL NN RA+ Y+
Sbjct: 141 SSGSDAASTLVVGSERETTIEEIMEMGYEREEVERALRA---------AFNNPDRAVEYL 191
Query: 197 MEALPRS 203
+ +P
Sbjct: 192 LTGIPED 198
>gnl|CDD|218673 pfam05642, Sporozoite_P67, Sporozoite P67 surface antigen. This
family consists of several Theileria P67 surface
antigens. A stage specific surface antigen of Theileria
parva, p67, is the basis for the development of an
anti-sporozoite vaccine for the control of East Coast
fever (ECF) in cattle. The antigen has been shown to
contain five distinct linear peptide sequences
recognised by sporozoite-neutralising murine monoclonal
antibodies.
Length = 727
Score = 28.5 bits (63), Expect = 3.8
Identities = 27/122 (22%), Positives = 34/122 (27%), Gaps = 17/122 (13%)
Query: 7 GGGGVGGGGHHNSGSAAAAAATSGGGQGGKAATLYGAPGGGKAATLYAQSGMSAGETQGG 66
GGGG G G A + GG GG A G+TQ
Sbjct: 201 GGGGAGALPGVGVGRAGVSPGVGVGGLGGVPGVGILASNTS-----------REGQTQDD 249
Query: 67 SVAGEEDKNAGAQGSTSTSGAASGTASTSLLSGVASS------SSGPSHAPGAALDSESE 120
+ + T+S S S+ SSGPS G S +
Sbjct: 250 QERDGDGRVIEPGVGLPGVRVGDSTSSPSTTRPSGSTTTTTPASSGPSAPGGPGSSSRNA 309
Query: 121 DT 122
T
Sbjct: 310 VT 311
>gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit;
Provisional.
Length = 482
Score = 28.3 bits (64), Expect = 4.1
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 32 GQGGKAATLYGAPGGGKAATLYA 54
G+ KA LYG PG GK + +A
Sbjct: 36 GKPKKALLLYGPPGVGKTSLAHA 58
>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional.
Length = 1352
Score = 28.6 bits (64), Expect = 4.3
Identities = 28/123 (22%), Positives = 43/123 (34%)
Query: 1 RRSSSRGGGGVGGGGHHNSGSAAAAAATSGGGQGGKAATLYGAPGGGKAATLYAQSGMSA 60
S + G S S ++++ +SG G G + P T ++
Sbjct: 217 ASSPAPAPGRSAADDAGASSSDSSSSESSGCGWGPENECPLPRPAPITLPTRIWEASGWN 276
Query: 61 GETQGGSVAGEEDKNAGAQGSTSTSGAASGTASTSLLSGVASSSSGPSHAPGAALDSESE 120
G + A S S S SG A +S + +SSSS S + + SES
Sbjct: 277 GPSSRPGPASSSSSPRERSPSPSPSSPGSGPAPSSPRASSSSSSSRESSSSSTSSSSESS 336
Query: 121 DTA 123
A
Sbjct: 337 RGA 339
Score = 27.8 bits (62), Expect = 7.1
Identities = 20/89 (22%), Positives = 26/89 (29%)
Query: 33 QGGKAATLYGAPGGGKAATLYAQSGMSAGETQGGSVAGEEDKNAGAQGSTSTSGAASGTA 92
A L A + A +G S + + + S AS
Sbjct: 761 PSLVPAKLAEALALLEPAEPQRGAGSSPPVRAEAAFRRPGRLRRSGPAADAASRTASKRK 820
Query: 93 STSLLSGVASSSSGPSHAPGAALDSESED 121
S S S SSGP+ PGAA
Sbjct: 821 SRSHTPDGGSESSGPARPPGAAARPPPAR 849
>gnl|CDD|235307 PRK04537, PRK04537, ATP-dependent RNA helicase RhlB; Provisional.
Length = 572
Score = 28.4 bits (63), Expect = 4.4
Identities = 21/126 (16%), Positives = 33/126 (26%), Gaps = 4/126 (3%)
Query: 1 RRSSSRGGGGVGGGGHHNS-GSAAAAAATSGGGQGGKAATLYGAPGGGKAATLYAQSGMS 59
RR R G G G G A G + + + G A +
Sbjct: 431 RRGGGRSGPGGGSRSGSVGGGGRRDGAGADGKPRPRRKPRVEGEADAAAAGAETPVVAAA 490
Query: 60 AGETQG-GSVAGEE--DKNAGAQGSTSTSGAASGTASTSLLSGVASSSSGPSHAPGAALD 116
A + G + GE K + GA + + + + AA
Sbjct: 491 AAQAPGVVAADGERAPRKRRRRRNGRPVEGAEPVSTPVPAPAAPRKPTQVVATPVRAAAK 550
Query: 117 SESEDT 122
S +
Sbjct: 551 SSGSPS 556
>gnl|CDD|236573 PRK09567, nirA, ferredoxin-nitrite reductase; Reviewed.
Length = 593
Score = 28.4 bits (64), Expect = 4.4
Identities = 15/51 (29%), Positives = 18/51 (35%), Gaps = 3/51 (5%)
Query: 22 AAAAAATSGGGQGGKAATLYGAPGGGKAATLYAQSGMSAGETQGGSVAGEE 72
A AA AT G G A P G A + AQ G + +E
Sbjct: 22 ADAARATRGAAGGQTPAAPAAEPTGPDAIHIKAQ---DRFLAAGKKLCDQE 69
>gnl|CDD|216001 pfam00577, Usher, Type VII secretion system (T7SS), usher protein.
The chaperone-usher (CU) pathway or Type VII secretion
system (T7SS) in Gram-negative (diderm) bacteria is
responsible for the secretion and assembly of prepilins
for fimbriae biogenesis, the prototypical Type 1 pili.
Following the prepilins export to the periplasm by the
Sec translocon, the biogenesis of fimbriae requires a
two-component assembly and transport system which is
composed of a periplasmic chaperone and an outer
membrane protein, which has been termed a molecular
'usher'. The usher protein is rather large (from 86 to
100 Kd) and seems to be mainly composed of
membrane-spanning beta-sheets, a structure reminiscent
of porins. Although the degree of sequence similarity of
these proteins is not very high they share a number of
characteristics. One of these is the presence of two
pairs of cysteines, the first one located in the
N-terminal part and the second at the C-terminal
extremity that are probably involved in disulphide
bonds. The best conserved region is located in the
central part of these proteins.
Length = 552
Score = 28.0 bits (63), Expect = 5.2
Identities = 20/112 (17%), Positives = 29/112 (25%), Gaps = 19/112 (16%)
Query: 3 SSSRGGGGVGGGGHHNSGSAAAAAATSGGGQGGKAATLYGAPGGGKAATLYAQSGMSAGE 62
+S+ G G S A ++ G G Y Y + S
Sbjct: 397 TSNTGVSGSLFEDDRLSYGVNAGRSSDGKESSGSLNLSYRGD--------YGELSGSYSY 448
Query: 63 TQGGSVAGEEDKNAGAQGSTSTSGAASGTASTSLLSGVASSSSGPSHAPGAA 114
++ Q S SG + LS + APG A
Sbjct: 449 SRDYR-----------QLGASLSGGIVAHSHGVTLSQPLGDTRALVDAPGVA 489
>gnl|CDD|223023 PHA03249, PHA03249, DNA packaging tegument protein UL25;
Provisional.
Length = 653
Score = 28.1 bits (62), Expect = 5.3
Identities = 12/95 (12%), Positives = 28/95 (29%), Gaps = 3/95 (3%)
Query: 1 RRSSSRGGGGVGGGGHHNSGSAAAAAATSGGGQGGKAATLYGAPGGGKAATLYAQSGMSA 60
+ + G G GG + + + T+ A A +S +
Sbjct: 72 SEAEAERGRRAGMGGRNKATKPSRRNKTTQCRPTSLAL---ATAATMPATPSSGKSPKVS 128
Query: 61 GETQGGSVAGEEDKNAGAQGSTSTSGAASGTASTS 95
S++ E++ G +S + + +
Sbjct: 129 SPPSIPSLSEEDEGAERNSGGDDSSHTDNESTQSQ 163
>gnl|CDD|225676 COG3134, COG3134, Predicted outer membrane lipoprotein [Function
unknown].
Length = 179
Score = 27.5 bits (61), Expect = 5.6
Identities = 19/55 (34%), Positives = 24/55 (43%), Gaps = 7/55 (12%)
Query: 15 GHHNSGSAAAAAATS------GGGQGGKAATLYGAPGGGKAATLYAQSGMSAGET 63
+ +GS A A GGG+G AT+ GA GGG A Q M +T
Sbjct: 68 ENRIAGSVLGAVAGGVIGHQFGGGRGKDVATVAGALGGGYAGN-QVQGSMQESDT 121
>gnl|CDD|234371 TIGR03839, termin_org_P1, adhesin P1. Members of this protein
family are the major adhesin of the Mycoplasma terminal
organelle. The protein is called adhesin P1, cytadhesin
P1, P140, attachment protein, and MgPa, with locus names
MG191 in Mycoplasma genitalium and MPN141 in M.
pneumoniae. A conserved C-terminal region is shared by
additional paralogs in M. pneumoniae and M.
gallisepticum, as well as by the member of this family
[Cell envelope, Surface structures, Cellular processes,
Pathogenesis].
Length = 1425
Score = 27.8 bits (61), Expect = 6.9
Identities = 15/72 (20%), Positives = 21/72 (29%), Gaps = 1/72 (1%)
Query: 59 SAGETQGGSVAGEEDKNAGAQGSTSTSGAASGTASTSLLSGVASSSSGPSHAPGAALDSE 118
G G V +A G G AS S S S + P+ A + E
Sbjct: 212 YFGAMFGLKVKNAM-SDAPKTGEKLAEGTASSAGSGSSSSAAGGGAVAPTAAKALKREVE 270
Query: 119 SEDTATKAQQLL 130
++ L
Sbjct: 271 EGSSSGMGTMLP 282
>gnl|CDD|236722 PRK10590, PRK10590, ATP-dependent RNA helicase RhlE; Provisional.
Length = 456
Score = 27.5 bits (61), Expect = 7.3
Identities = 11/45 (24%), Positives = 12/45 (26%)
Query: 5 SRGGGGVGGGGHHNSGSAAAAAATSGGGQGGKAATLYGAPGGGKA 49
RGGGG G GG G + G A
Sbjct: 393 QRGGGGRGQGGGRGQQQGQPRRGEGGAKSASAKPAEKPSRRLGDA 437
>gnl|CDD|233046 TIGR00603, rad25, DNA repair helicase rad25. All proteins in this
family for which functions are known are DNA-DNA
helicases used for the initiation of nucleotide excision
repair and transacription as part of the TFIIH
complex.This family is based on the phylogenomic
analysis of JA Eisen (1999, Ph.D. Thesis, Stanford
University) [DNA metabolism, DNA replication,
recombination, and repair].
Length = 732
Score = 27.5 bits (61), Expect = 7.7
Identities = 15/56 (26%), Positives = 23/56 (41%), Gaps = 2/56 (3%)
Query: 55 QSGMSAGETQGGSVAGEEDKNAGAQGSTSTSGAASGTASTSLLSGVASSSSGPSHA 110
Q + AG+ E + + A G++ + +ASG A G SS SG
Sbjct: 656 QKVLLAGDLDAELEVLEGEFGSRALGASRSMSSASGKAVRR--GGSLSSLSGGDDM 709
>gnl|CDD|236382 PRK09111, PRK09111, DNA polymerase III subunits gamma and tau;
Validated.
Length = 598
Score = 27.6 bits (62), Expect = 8.0
Identities = 20/52 (38%), Positives = 22/52 (42%), Gaps = 4/52 (7%)
Query: 3 SSSRGGGGVGGGGHHNSGSAAA----AAATSGGGQGGKAATLYGAPGGGKAA 50
S GGGG GG G+ AA AA + GG AA L P AA
Sbjct: 392 PSPGGGGGGPPGGGGAPGAPAAAAAPGAAAAAPAAGGPAAALAAVPDAAAAA 443
>gnl|CDD|131830 TIGR02783, TrbL_P, P-type conjugative transfer protein TrbL. The
TrbL protein is found in the trb locus of Agrobacterium
Ti plasmids where it is involved in the type IV
secretion system for plasmid conjugative transfer. TrbL
is a homolog of the F-type TraG protein (which is
believed to be a mating pair stabilization pore-forming
protein, pfam07916) as well as the vir system VirB6
protein [Cellular processes, Conjugation].
Length = 298
Score = 27.4 bits (61), Expect = 8.2
Identities = 14/47 (29%), Positives = 15/47 (31%), Gaps = 4/47 (8%)
Query: 8 GGGVGGGGHHNSGSAAAAAATSGG----GQGGKAATLYGAPGGGKAA 50
V G +G A AAAA G G A A G A
Sbjct: 251 ASLVSGASVMGAGGAVAAAAAVAGVAAAGGAALGAGASSAMAGASGA 297
>gnl|CDD|235782 PRK06341, PRK06341, single-stranded DNA-binding protein;
Provisional.
Length = 166
Score = 26.7 bits (59), Expect = 8.4
Identities = 10/32 (31%), Positives = 13/32 (40%)
Query: 4 SSRGGGGVGGGGHHNSGSAAAAAATSGGGQGG 35
GG GGG +SG + + G GG
Sbjct: 123 GGGGGDDGGGGDFGSSGPSRGGPRPASSGGGG 154
>gnl|CDD|237658 PRK14284, PRK14284, chaperone protein DnaJ; Provisional.
Length = 391
Score = 27.5 bits (61), Expect = 8.4
Identities = 19/62 (30%), Positives = 24/62 (38%), Gaps = 1/62 (1%)
Query: 6 RGGGGVGGGGHHNSGSAAAAAATSGGGQGGKAATLYGAPGGGKAATLYAQSGMSAGETQG 65
G GG GG G N A + GG+ G + + GG + G AG QG
Sbjct: 73 AGAGGFGGAGMGNMEDALRTFMGAFGGEFGGGGSFFEGLFGGLGEA-FGMRGGPAGARQG 131
Query: 66 GS 67
S
Sbjct: 132 AS 133
>gnl|CDD|218573 pfam05387, Chorion_3, Chorion family 3. This family consists of
several Drosophila chorion proteins S36 and S38. The
chorion genes of Drosophila are amplified in response to
developmental signals in the follicle cells of the
ovary.
Length = 277
Score = 27.0 bits (59), Expect = 9.4
Identities = 20/96 (20%), Positives = 34/96 (35%), Gaps = 2/96 (2%)
Query: 5 SRGGGGVGGGGHHNSGSAAAAAATSGGGQGGKAATLYGAPGGGKAATLYAQSGMSAGETQ 64
S GGGG G G + +G++A GG + G G A + + +
Sbjct: 22 SAGGGGGHGSGQYGAGASAGLEEYVNAAAGGAQPS--GGNIIGAQAEIQPTPEEAGRLGR 79
Query: 65 GGSVAGEEDKNAGAQGSTSTSGAASGTASTSLLSGV 100
+ + N Q +++ A A L S +
Sbjct: 80 VQAQLQALNANPPYQKLKNSNTIAESLAEPQLASNI 115
>gnl|CDD|205691 pfam13513, HEAT_EZ, HEAT-like repeat. The HEAT repeat family is
related to armadillo/beta-catenin-like repeats (see
pfam00514). These EZ repeats are found in subunits of
cyanobacterial phycocyanin lyase and other proteins and
probably carry out a scaffolding role.
Length = 55
Score = 25.1 bits (55), Expect = 9.4
Identities = 10/28 (35%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Query: 166 VKQVVPALITLLSMDHNFDMMNNACRAL 193
V +++PAL+ LL D + ++ A AL
Sbjct: 26 VPELLPALLPLLKDDDD-EVREAAAWAL 52
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.309 0.124 0.336
Gapped
Lambda K H
0.267 0.0630 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 11,768,117
Number of extensions: 1090581
Number of successful extensions: 2015
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1688
Number of HSP's successfully gapped: 217
Length of query: 249
Length of database: 10,937,602
Length adjustment: 94
Effective length of query: 155
Effective length of database: 6,768,326
Effective search space: 1049090530
Effective search space used: 1049090530
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 58 (26.3 bits)