RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy1198
(249 letters)
>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId:
10090]}
Length = 434
Score = 67.5 bits (163), Expect = 1e-13
Identities = 24/131 (18%), Positives = 50/131 (38%), Gaps = 4/131 (3%)
Query: 116 DSESED-TATKAQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALI 174
D S T + + +V + + QLQA ++L + + ++P +
Sbjct: 3 DIGSNQGTVNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFV 62
Query: 175 TLLSMDHNFDMMNNACRALTYMMEALPRSSAVVL--DAVPTFLEKLQVIQCMDVAEQSLT 232
+ L + + ALT + + V+ A+P F+ L ++EQ++
Sbjct: 63 SFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLA-SPHAHISEQAVW 121
Query: 233 ALEMLSRRHSK 243
AL ++ S
Sbjct: 122 ALGNIAGDGSA 132
Score = 39.8 bits (91), Expect = 2e-04
Identities = 16/116 (13%), Positives = 43/116 (37%), Gaps = 5/116 (4%)
Query: 128 QLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHNFDMMN 187
LV + + D Q +A + G + + ++ L+ LLS ++
Sbjct: 317 PFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDT-KIIQ 375
Query: 188 NACRALTYMMEALPRSS----AVVLDAVPTFLEKLQVIQCMDVAEQSLTALEMLSR 239
A++ + +A + ++ L+K++ +Q + +L ++ +
Sbjct: 376 VILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEK 431
>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 503
Score = 65.9 bits (159), Expect = 4e-13
Identities = 30/141 (21%), Positives = 55/141 (39%), Gaps = 3/141 (2%)
Query: 103 SSSGPSHAPGAALDSESEDTATKAQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLT 162
+ S + D + + + D +QL A V+ Q+L + +
Sbjct: 54 ADSDEEDESSVSADQQFYSQLQQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPID 113
Query: 163 GFPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEALPRSSAVVLD--AVPTFLEKLQV 220
VVP L+ + + + A ALT + + VV+D AVP F++ L
Sbjct: 114 VVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLY- 172
Query: 221 IQCMDVAEQSLTALEMLSRRH 241
++V EQ++ AL ++
Sbjct: 173 TGSVEVKEQAIWALGNVAGDS 193
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein
phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId:
9606]}
Length = 588
Score = 43.2 bits (100), Expect = 2e-05
Identities = 27/119 (22%), Positives = 47/119 (39%), Gaps = 13/119 (10%)
Query: 125 KAQQLLVS--LQAIGDEDQQL-QAVVEMCQML--VMGNEDTLTGFPVKQVVPALITLLSM 179
A ++ L GD + + +L V G + T K ++P ++ +
Sbjct: 476 WAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDIT-----TKHMLPTVLRMAG- 529
Query: 180 DHNFDMMNNACRALTYMMEALPRSSAVVLDAVPTFLEKLQVIQCMDVAEQSLTALEMLS 238
D ++ N ++L + L S + V LEKL Q +DV + AL +LS
Sbjct: 530 DPVANVRFNVAKSLQKIGPILDNS--TLQSEVKPILEKLTQDQDVDVKYFAQEALTVLS 586
>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId:
9606]}
Length = 529
Score = 39.1 bits (89), Expect = 3e-04
Identities = 22/123 (17%), Positives = 40/123 (32%), Gaps = 5/123 (4%)
Query: 121 DTATKAQQLLVSLQAIGDEDQQLQ-AVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSM 179
+ AT+A L L + DEDQ + M L Q+V A++ +
Sbjct: 13 ELATRAIPELTKL--LNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQN 70
Query: 180 DHNFDMMNNACRALTYMMEALPRSSAVV-LDAVPTFLEKLQVIQCMDVAEQSLTALEMLS 238
++ + L + A+ +P ++ L V ++T L L
Sbjct: 71 TNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLG-SPVDSVLFYAITTLHNLL 129
Query: 239 RRH 241
Sbjct: 130 LHQ 132
Score = 29.1 bits (63), Expect = 0.58
Identities = 20/124 (16%), Positives = 35/124 (28%), Gaps = 3/124 (2%)
Query: 73 DKNAGAQGSTSTSGAASGTASTSLLSGVASSSSGPSHAPGAALDSESEDTATKAQQLLVS 132
+ Q TS G + + +G H + + L V
Sbjct: 408 RAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQ 467
Query: 133 LQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHNFDMMNNACRA 192
L E+ Q A +C++ +++ + L LL N + A
Sbjct: 468 LLYSPIENIQRVAAGVLCEL--AQDKEAAEAIEAEGATAPLTELLH-SRNEGVATYAAAV 524
Query: 193 LTYM 196
L M
Sbjct: 525 LFRM 528
>d1w6ga3 d.17.2.1 (A:97-211) Copper amine oxidase, domains 1 and 2
{Arthrobacter globiformis [TaxId: 1665]}
Length = 115
Score = 26.3 bits (58), Expect = 1.9
Identities = 9/57 (15%), Positives = 22/57 (38%), Gaps = 5/57 (8%)
Query: 147 VEMCQMLVMGNEDTLT-----GFPVKQVVPALITLLSMDHNFDMMNNACRALTYMME 198
E+ + L+ +E L V +V A ++ ++ + R L ++ +
Sbjct: 9 FEVVEQLLATDERWLKALAARNLDVSKVRVAPLSAGVFEYAEERGRRILRGLAFVQD 65
>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic
domain {Archaeon Methanococcus voltae [TaxId: 2188]}
Length = 258
Score = 27.0 bits (58), Expect = 2.2
Identities = 22/172 (12%), Positives = 46/172 (26%), Gaps = 2/172 (1%)
Query: 19 SGSAAAAAATSGGGQGGKAATLYGAPGGGKAATLYAQSGMSAGETQGGSVAGEEDKNAGA 78
+ S+ + GG + G G GK + QS ++ + E
Sbjct: 18 TSSSELDSVLGGGLESQSVTEFAGVFGSGK-TQIMHQSCVNLQNPEFLFYDEEAVSKGEV 76
Query: 79 QGSTSTSGAASGTASTSLLSGVASSSSGPSHAPGAALDSESEDTATKAQQLLVSLQAIGD 138
+ GT + +A + + ++ +
Sbjct: 77 AQPKAVYIDTEGTFRPERIMQMAEHAGIDGQTVLDNTFVARAYNSDMQMLFAEKIEDLIQ 136
Query: 139 EDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHNFDMMNNAC 190
E ++ VV NE T G ++ L ++ + + N
Sbjct: 137 EGNNIKLVVIDSLTSTFRNEYTGRGKLAER-QQKLGRHMATLNKLADLFNCV 187
>d1kv7a3 b.6.1.3 (A:336-516) multi-copper oxidase CueO {Escherichia
coli [TaxId: 562]}
Length = 181
Score = 25.0 bits (54), Expect = 8.4
Identities = 9/28 (32%), Positives = 12/28 (42%)
Query: 160 TLTGFPVKQVVPALITLLSMDHNFDMMN 187
+L P + + LSMD DMM
Sbjct: 1 SLPALPSLEGLTVRKLQLSMDPMLDMMG 28
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.309 0.124 0.336
Gapped
Lambda K H
0.267 0.0592 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 766,496
Number of extensions: 30878
Number of successful extensions: 101
Number of sequences better than 10.0: 1
Number of HSP's gapped: 101
Number of HSP's successfully gapped: 17
Length of query: 249
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 166
Effective length of database: 1,268,006
Effective search space: 210488996
Effective search space used: 210488996
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 52 (24.1 bits)