BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11980
(831 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3OUH|A Chain A, Phd2-R127 With Jnj41536014
pdb|3OUJ|A Chain A, Phd2 With 2-Oxoglutarate
Length = 237
Score = 156 bits (394), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 84/192 (43%), Positives = 112/192 (58%), Gaps = 47/192 (24%)
Query: 640 IENVIRDMDQYGLCVVDNFLGPERGMAVLHEVLGMYHSGVFKDGQLVSNKSTNKQDLKTI 699
+E ++ M+++G+CVVD+FLG E G + EV ++ +G F DGQLVS KS + +D I
Sbjct: 16 LEYIVPCMNKHGICVVDDFLGKETGQQIGDEVRALHDTGKFTDGQLVSQKSDSSKD---I 72
Query: 700 RGDQITWIDGRETYCSNIGRLISEVDAIIMRANRMVNNGRMGDFVINGRTKQNGGLLRIF 759
RGD+ITWI+G+E C IG L+S +D +I N G++G + INGRTK
Sbjct: 73 RGDKITWIEGKEPGCETIGLLMSSMDDLIRHCN-----GKLGSYKINGRTK--------- 118
Query: 760 PEGGGDKVADIEPMFDRILFFWSDRRNPHEAMVACYPGHGSHYVKHVDNPNRDGRCITAI 819
AMVACYPG+G+ YV+HVDNPN DGRC+T I
Sbjct: 119 ------------------------------AMVACYPGNGTGYVRHVDNPNGDGRCVTCI 148
Query: 820 YYLNRDWDIKVS 831
YYLN+DWD KVS
Sbjct: 149 YYLNKDWDAKVS 160
Score = 122 bits (305), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 87/274 (31%), Positives = 118/274 (43%), Gaps = 103/274 (37%)
Query: 597 MDQYGLCVLDDFLGPERDMHLDTNVVVVPPFHHTNNDRVHSDMIENVIRDMDQYGLCVVD 656
M+++G+CV+DDFLG E
Sbjct: 23 MNKHGICVVDDFLGKE-------------------------------------------- 38
Query: 657 NFLGPERGMAVLHEVLGMYHSGVFKDGQLVSNKSTNKQDLKTIRGDQITWIDGRETYCSN 716
G + EV ++ +G F DGQLVS KS + +D IRGD+ITWI+G+E C
Sbjct: 39 ------TGQQIGDEVRALHDTGKFTDGQLVSQKSDSSKD---IRGDKITWIEGKEPGCET 89
Query: 717 IGRLISEVDAIIMRANRMVNNGRMGDFVINGRTKQ------------------------- 751
IG L+S +D +I NG++G + INGRTK
Sbjct: 90 IGLLMSSMDDLIRHC-----NGKLGSYKINGRTKAMVACYPGNGTGYVRHVDNPNGDGRC 144
Query: 752 ---------------NGGLLRIFPEGGGDKVADIEPMFDRILFFWSDRRNPHEAMVACYP 796
+GG+LRIFPEG + ADIEP FDR+LFFWSDRRNPHE P
Sbjct: 145 VTCIYYLNKDWDAKVSGGILRIFPEGKA-QFADIEPKFDRLLFFWSDRRNPHEVQ----P 199
Query: 797 GHGSHYVKHVDNPNRDGRCITAIYYLNRDWDIKV 830
+ + Y V + D R + YL + ++V
Sbjct: 200 AYATRYAITVWYFDADERARAKVKYLTGEKGVRV 233
>pdb|3HQR|A Chain A, Phd2:mn:nog:hif1-Alpha Substrate Complex
Length = 246
Score = 156 bits (394), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 84/192 (43%), Positives = 112/192 (58%), Gaps = 47/192 (24%)
Query: 640 IENVIRDMDQYGLCVVDNFLGPERGMAVLHEVLGMYHSGVFKDGQLVSNKSTNKQDLKTI 699
+E ++ M+++G+CVVD+FLG E G + EV ++ +G F DGQLVS KS + +D I
Sbjct: 15 LEYIVPCMNKHGICVVDDFLGKETGQQIGDEVRALHDTGKFTDGQLVSQKSDSSKD---I 71
Query: 700 RGDQITWIDGRETYCSNIGRLISEVDAIIMRANRMVNNGRMGDFVINGRTKQNGGLLRIF 759
RGD+ITWI+G+E C IG L+S +D +I N G++G + INGRTK
Sbjct: 72 RGDKITWIEGKEPGCETIGLLMSSMDDLIRHCN-----GKLGSYKINGRTK--------- 117
Query: 760 PEGGGDKVADIEPMFDRILFFWSDRRNPHEAMVACYPGHGSHYVKHVDNPNRDGRCITAI 819
AMVACYPG+G+ YV+HVDNPN DGRC+T I
Sbjct: 118 ------------------------------AMVACYPGNGTGYVRHVDNPNGDGRCVTCI 147
Query: 820 YYLNRDWDIKVS 831
YYLN+DWD KVS
Sbjct: 148 YYLNKDWDAKVS 159
Score = 122 bits (307), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 87/274 (31%), Positives = 118/274 (43%), Gaps = 103/274 (37%)
Query: 597 MDQYGLCVLDDFLGPERDMHLDTNVVVVPPFHHTNNDRVHSDMIENVIRDMDQYGLCVVD 656
M+++G+CV+DDFLG E
Sbjct: 22 MNKHGICVVDDFLGKE-------------------------------------------- 37
Query: 657 NFLGPERGMAVLHEVLGMYHSGVFKDGQLVSNKSTNKQDLKTIRGDQITWIDGRETYCSN 716
G + EV ++ +G F DGQLVS KS + +D IRGD+ITWI+G+E C
Sbjct: 38 ------TGQQIGDEVRALHDTGKFTDGQLVSQKSDSSKD---IRGDKITWIEGKEPGCET 88
Query: 717 IGRLISEVDAIIMRANRMVNNGRMGDFVINGRTKQ------------------------- 751
IG L+S +D +I NG++G + INGRTK
Sbjct: 89 IGLLMSSMDDLIRHC-----NGKLGSYKINGRTKAMVACYPGNGTGYVRHVDNPNGDGRC 143
Query: 752 ---------------NGGLLRIFPEGGGDKVADIEPMFDRILFFWSDRRNPHEAMVACYP 796
+GG+LRIFPEG + ADIEP FDR+LFFWSDRRNPHE P
Sbjct: 144 VTCIYYLNKDWDAKVSGGILRIFPEGKA-QFADIEPKFDRLLFFWSDRRNPHEVQ----P 198
Query: 797 GHGSHYVKHVDNPNRDGRCITAIYYLNRDWDIKV 830
+ + Y V + D R + YL + ++V
Sbjct: 199 AYATRYAITVWYFDADERAAAKVKYLTGEKGVRV 232
>pdb|2G1M|A Chain A, Cellular Oxygen Sensing: Crystal Structure Of Hypoxia-
Inducible Factor Prolyl Hydroxylase (Phd2)
pdb|3HQU|A Chain A, Phd2:fe:un9:partial Hif1-Alpha Substrate Complex
Length = 246
Score = 156 bits (394), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 84/192 (43%), Positives = 112/192 (58%), Gaps = 47/192 (24%)
Query: 640 IENVIRDMDQYGLCVVDNFLGPERGMAVLHEVLGMYHSGVFKDGQLVSNKSTNKQDLKTI 699
+E ++ M+++G+CVVD+FLG E G + EV ++ +G F DGQLVS KS + +D I
Sbjct: 15 LEYIVPCMNKHGICVVDDFLGKETGQQIGDEVRALHDTGKFTDGQLVSQKSDSSKD---I 71
Query: 700 RGDQITWIDGRETYCSNIGRLISEVDAIIMRANRMVNNGRMGDFVINGRTKQNGGLLRIF 759
RGD+ITWI+G+E C IG L+S +D +I N G++G + INGRTK
Sbjct: 72 RGDKITWIEGKEPGCETIGLLMSSMDDLIRHCN-----GKLGSYKINGRTK--------- 117
Query: 760 PEGGGDKVADIEPMFDRILFFWSDRRNPHEAMVACYPGHGSHYVKHVDNPNRDGRCITAI 819
AMVACYPG+G+ YV+HVDNPN DGRC+T I
Sbjct: 118 ------------------------------AMVACYPGNGTGYVRHVDNPNGDGRCVTCI 147
Query: 820 YYLNRDWDIKVS 831
YYLN+DWD KVS
Sbjct: 148 YYLNKDWDAKVS 159
Score = 122 bits (305), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 87/274 (31%), Positives = 118/274 (43%), Gaps = 103/274 (37%)
Query: 597 MDQYGLCVLDDFLGPERDMHLDTNVVVVPPFHHTNNDRVHSDMIENVIRDMDQYGLCVVD 656
M+++G+CV+DDFLG E
Sbjct: 22 MNKHGICVVDDFLGKE-------------------------------------------- 37
Query: 657 NFLGPERGMAVLHEVLGMYHSGVFKDGQLVSNKSTNKQDLKTIRGDQITWIDGRETYCSN 716
G + EV ++ +G F DGQLVS KS + +D IRGD+ITWI+G+E C
Sbjct: 38 ------TGQQIGDEVRALHDTGKFTDGQLVSQKSDSSKD---IRGDKITWIEGKEPGCET 88
Query: 717 IGRLISEVDAIIMRANRMVNNGRMGDFVINGRTKQ------------------------- 751
IG L+S +D +I NG++G + INGRTK
Sbjct: 89 IGLLMSSMDDLIRHC-----NGKLGSYKINGRTKAMVACYPGNGTGYVRHVDNPNGDGRC 143
Query: 752 ---------------NGGLLRIFPEGGGDKVADIEPMFDRILFFWSDRRNPHEAMVACYP 796
+GG+LRIFPEG + ADIEP FDR+LFFWSDRRNPHE P
Sbjct: 144 VTCIYYLNKDWDAKVSGGILRIFPEGKA-QFADIEPKFDRLLFFWSDRRNPHEVQ----P 198
Query: 797 GHGSHYVKHVDNPNRDGRCITAIYYLNRDWDIKV 830
+ + Y V + D R + YL + ++V
Sbjct: 199 AYATRYAITVWYFDADERARAKVKYLTGEKGVRV 232
>pdb|2G19|A Chain A, Cellular Oxygen Sensing: Crystal Structure Of Hypoxia-
Inducible Factor Prolyl Hydroxylase (Phd2)
Length = 244
Score = 156 bits (394), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 84/192 (43%), Positives = 112/192 (58%), Gaps = 47/192 (24%)
Query: 640 IENVIRDMDQYGLCVVDNFLGPERGMAVLHEVLGMYHSGVFKDGQLVSNKSTNKQDLKTI 699
+E ++ M+++G+CVVD+FLG E G + EV ++ +G F DGQLVS KS + +D I
Sbjct: 16 LEYIVPCMNKHGICVVDDFLGKETGQQIGDEVRALHDTGKFTDGQLVSQKSDSSKD---I 72
Query: 700 RGDQITWIDGRETYCSNIGRLISEVDAIIMRANRMVNNGRMGDFVINGRTKQNGGLLRIF 759
RGD+ITWI+G+E C IG L+S +D +I N G++G + INGRTK
Sbjct: 73 RGDKITWIEGKEPGCETIGLLMSSMDDLIRHCN-----GKLGSYKINGRTK--------- 118
Query: 760 PEGGGDKVADIEPMFDRILFFWSDRRNPHEAMVACYPGHGSHYVKHVDNPNRDGRCITAI 819
AMVACYPG+G+ YV+HVDNPN DGRC+T I
Sbjct: 119 ------------------------------AMVACYPGNGTGYVRHVDNPNGDGRCVTCI 148
Query: 820 YYLNRDWDIKVS 831
YYLN+DWD KVS
Sbjct: 149 YYLNKDWDAKVS 160
Score = 122 bits (305), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 87/274 (31%), Positives = 118/274 (43%), Gaps = 103/274 (37%)
Query: 597 MDQYGLCVLDDFLGPERDMHLDTNVVVVPPFHHTNNDRVHSDMIENVIRDMDQYGLCVVD 656
M+++G+CV+DDFLG E
Sbjct: 23 MNKHGICVVDDFLGKE-------------------------------------------- 38
Query: 657 NFLGPERGMAVLHEVLGMYHSGVFKDGQLVSNKSTNKQDLKTIRGDQITWIDGRETYCSN 716
G + EV ++ +G F DGQLVS KS + +D IRGD+ITWI+G+E C
Sbjct: 39 ------TGQQIGDEVRALHDTGKFTDGQLVSQKSDSSKD---IRGDKITWIEGKEPGCET 89
Query: 717 IGRLISEVDAIIMRANRMVNNGRMGDFVINGRTKQ------------------------- 751
IG L+S +D +I NG++G + INGRTK
Sbjct: 90 IGLLMSSMDDLIRHC-----NGKLGSYKINGRTKAMVACYPGNGTGYVRHVDNPNGDGRC 144
Query: 752 ---------------NGGLLRIFPEGGGDKVADIEPMFDRILFFWSDRRNPHEAMVACYP 796
+GG+LRIFPEG + ADIEP FDR+LFFWSDRRNPHE P
Sbjct: 145 VTCIYYLNKDWDAKVSGGILRIFPEGKA-QFADIEPKFDRLLFFWSDRRNPHEVQ----P 199
Query: 797 GHGSHYVKHVDNPNRDGRCITAIYYLNRDWDIKV 830
+ + Y V + D R + YL + ++V
Sbjct: 200 AYATRYAITVWYFDADERARAKVKYLTGEKGVRV 233
>pdb|2HBT|A Chain A, Crystal Structure Of Hif Prolyl Hydroxylase Egln-1 In
Complex With A Biologically Active Inhibitor
pdb|2HBU|A Chain A, Crystal Structure Of Hif Prolyl Hydroxylase Egln-1 In
Complex With A Biologically Active Inhibitor
Length = 247
Score = 155 bits (393), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 84/192 (43%), Positives = 112/192 (58%), Gaps = 47/192 (24%)
Query: 640 IENVIRDMDQYGLCVVDNFLGPERGMAVLHEVLGMYHSGVFKDGQLVSNKSTNKQDLKTI 699
+E ++ M+++G+CVVD+FLG E G + EV ++ +G F DGQLVS KS + +D I
Sbjct: 16 LEYIVPCMNKHGICVVDDFLGKETGQQIGDEVRALHDTGKFTDGQLVSQKSDSSKD---I 72
Query: 700 RGDQITWIDGRETYCSNIGRLISEVDAIIMRANRMVNNGRMGDFVINGRTKQNGGLLRIF 759
RGD+ITWI+G+E C IG L+S +D +I N G++G + INGRTK
Sbjct: 73 RGDKITWIEGKEPGCETIGLLMSSMDDLIRHCN-----GKLGSYKINGRTK--------- 118
Query: 760 PEGGGDKVADIEPMFDRILFFWSDRRNPHEAMVACYPGHGSHYVKHVDNPNRDGRCITAI 819
AMVACYPG+G+ YV+HVDNPN DGRC+T I
Sbjct: 119 ------------------------------AMVACYPGNGTGYVRHVDNPNGDGRCVTCI 148
Query: 820 YYLNRDWDIKVS 831
YYLN+DWD KVS
Sbjct: 149 YYLNKDWDAKVS 160
Score = 121 bits (304), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 87/274 (31%), Positives = 118/274 (43%), Gaps = 103/274 (37%)
Query: 597 MDQYGLCVLDDFLGPERDMHLDTNVVVVPPFHHTNNDRVHSDMIENVIRDMDQYGLCVVD 656
M+++G+CV+DDFLG E
Sbjct: 23 MNKHGICVVDDFLGKE-------------------------------------------- 38
Query: 657 NFLGPERGMAVLHEVLGMYHSGVFKDGQLVSNKSTNKQDLKTIRGDQITWIDGRETYCSN 716
G + EV ++ +G F DGQLVS KS + +D IRGD+ITWI+G+E C
Sbjct: 39 ------TGQQIGDEVRALHDTGKFTDGQLVSQKSDSSKD---IRGDKITWIEGKEPGCET 89
Query: 717 IGRLISEVDAIIMRANRMVNNGRMGDFVINGRTKQ------------------------- 751
IG L+S +D +I NG++G + INGRTK
Sbjct: 90 IGLLMSSMDDLIRHC-----NGKLGSYKINGRTKAMVACYPGNGTGYVRHVDNPNGDGRC 144
Query: 752 ---------------NGGLLRIFPEGGGDKVADIEPMFDRILFFWSDRRNPHEAMVACYP 796
+GG+LRIFPEG + ADIEP FDR+LFFWSDRRNPHE P
Sbjct: 145 VTCIYYLNKDWDAKVSGGILRIFPEGKA-QFADIEPKFDRLLFFWSDRRNPHEVQ----P 199
Query: 797 GHGSHYVKHVDNPNRDGRCITAIYYLNRDWDIKV 830
+ + Y V + D R + YL + ++V
Sbjct: 200 AYATRYAITVWYFDADERARAKVKYLTGEKGVRV 233
>pdb|3OUI|A Chain A, Phd2-R717 With 40787422
Length = 213
Score = 155 bits (392), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 84/192 (43%), Positives = 112/192 (58%), Gaps = 47/192 (24%)
Query: 640 IENVIRDMDQYGLCVVDNFLGPERGMAVLHEVLGMYHSGVFKDGQLVSNKSTNKQDLKTI 699
+E ++ M+++G+CVVD+FLG E G + EV ++ +G F DGQLVS KS + +D I
Sbjct: 16 LEYIVPCMNKHGICVVDDFLGKETGQQIGDEVRALHDTGKFTDGQLVSQKSDSSKD---I 72
Query: 700 RGDQITWIDGRETYCSNIGRLISEVDAIIMRANRMVNNGRMGDFVINGRTKQNGGLLRIF 759
RGD+ITWI+G+E C IG L+S +D +I N G++G + INGRTK
Sbjct: 73 RGDKITWIEGKEPGCETIGLLMSSMDDLIRHCN-----GKLGSYKINGRTK--------- 118
Query: 760 PEGGGDKVADIEPMFDRILFFWSDRRNPHEAMVACYPGHGSHYVKHVDNPNRDGRCITAI 819
AMVACYPG+G+ YV+HVDNPN DGRC+T I
Sbjct: 119 ------------------------------AMVACYPGNGTGYVRHVDNPNGDGRCVTCI 148
Query: 820 YYLNRDWDIKVS 831
YYLN+DWD KVS
Sbjct: 149 YYLNKDWDAKVS 160
Score = 117 bits (292), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 82/250 (32%), Positives = 108/250 (43%), Gaps = 103/250 (41%)
Query: 597 MDQYGLCVLDDFLGPERDMHLDTNVVVVPPFHHTNNDRVHSDMIENVIRDMDQYGLCVVD 656
M+++G+CV+DDFLG E
Sbjct: 23 MNKHGICVVDDFLGKE-------------------------------------------- 38
Query: 657 NFLGPERGMAVLHEVLGMYHSGVFKDGQLVSNKSTNKQDLKTIRGDQITWIDGRETYCSN 716
G + EV ++ +G F DGQLVS KS + +D IRGD+ITWI+G+E C
Sbjct: 39 ------TGQQIGDEVRALHDTGKFTDGQLVSQKSDSSKD---IRGDKITWIEGKEPGCET 89
Query: 717 IGRLISEVDAIIMRANRMVNNGRMGDFVINGRTKQ------------------------- 751
IG L+S +D +I NG++G + INGRTK
Sbjct: 90 IGLLMSSMDDLIRHC-----NGKLGSYKINGRTKAMVACYPGNGTGYVRHVDNPNGDGRC 144
Query: 752 ---------------NGGLLRIFPEGGGDKVADIEPMFDRILFFWSDRRNPHEAMVACYP 796
+GG+LRIFPEG + ADIEP FDR+LFFWSDRRNPHE P
Sbjct: 145 VTCIYYLNKDWDAKVSGGILRIFPEGKA-QFADIEPKFDRLLFFWSDRRNPHEVQ----P 199
Query: 797 GHGSHYVKHV 806
+ + Y V
Sbjct: 200 AYATRYAITV 209
>pdb|2Y33|A Chain A, S-Nitrosylated Phd2 (Gsno Soaked) In Complex With Zn(Ii)
And Un9
pdb|2Y34|A Chain A, S-Nitrosylated Phd2 (No Exposed) In Complex With Fe(Ii)
And Un9
Length = 252
Score = 152 bits (384), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 83/192 (43%), Positives = 111/192 (57%), Gaps = 47/192 (24%)
Query: 640 IENVIRDMDQYGLCVVDNFLGPERGMAVLHEVLGMYHSGVFKDGQLVSNKSTNKQDLKTI 699
+E ++ M+++G+CVVD+FLG E G + EV ++ +G F DGQLVS KS + +D I
Sbjct: 21 LEYIVPCMNKHGICVVDDFLGKETGQQIGDEVRALHDTGKFTDGQLVSQKSDSSKD---I 77
Query: 700 RGDQITWIDGRETYCSNIGRLISEVDAIIMRANRMVNNGRMGDFVINGRTKQNGGLLRIF 759
RGD+ITWI+G+E C IG L+S +D +I N G++G + INGRTK
Sbjct: 78 RGDKITWIEGKEPGCETIGLLMSSMDDLIRHCN-----GKLGSYKINGRTK--------- 123
Query: 760 PEGGGDKVADIEPMFDRILFFWSDRRNPHEAMVACYPGHGSHYVKHVDNPNRDGRCITAI 819
AMVA YPG+G+ YV+HVDNPN DGRC+T I
Sbjct: 124 ------------------------------AMVAXYPGNGTGYVRHVDNPNGDGRCVTCI 153
Query: 820 YYLNRDWDIKVS 831
YYLN+DWD KVS
Sbjct: 154 YYLNKDWDAKVS 165
Score = 122 bits (305), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 87/274 (31%), Positives = 118/274 (43%), Gaps = 103/274 (37%)
Query: 597 MDQYGLCVLDDFLGPERDMHLDTNVVVVPPFHHTNNDRVHSDMIENVIRDMDQYGLCVVD 656
M+++G+CV+DDFLG E
Sbjct: 28 MNKHGICVVDDFLGKE-------------------------------------------- 43
Query: 657 NFLGPERGMAVLHEVLGMYHSGVFKDGQLVSNKSTNKQDLKTIRGDQITWIDGRETYCSN 716
G + EV ++ +G F DGQLVS KS + +D IRGD+ITWI+G+E C
Sbjct: 44 ------TGQQIGDEVRALHDTGKFTDGQLVSQKSDSSKD---IRGDKITWIEGKEPGCET 94
Query: 717 IGRLISEVDAIIMRANRMVNNGRMGDFVINGRTKQ------------------------- 751
IG L+S +D +I NG++G + INGRTK
Sbjct: 95 IGLLMSSMDDLIRHC-----NGKLGSYKINGRTKAMVAXYPGNGTGYVRHVDNPNGDGRC 149
Query: 752 ---------------NGGLLRIFPEGGGDKVADIEPMFDRILFFWSDRRNPHEAMVACYP 796
+GG+LRIFPEG + ADIEP FDR+LFFWSDRRNPHE P
Sbjct: 150 VTCIYYLNKDWDAKVSGGILRIFPEGKA-QFADIEPKFDRLLFFWSDRRNPHEVQ----P 204
Query: 797 GHGSHYVKHVDNPNRDGRCITAIYYLNRDWDIKV 830
+ + Y V + D R + YL + ++V
Sbjct: 205 AYATRYAITVWYFDADERARAKVKYLTGEKGVRV 238
>pdb|2I13|A Chain A, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
pdb|2I13|B Chain B, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
Length = 190
Score = 134 bits (336), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 76/198 (38%), Positives = 105/198 (53%), Gaps = 30/198 (15%)
Query: 156 GERPYECKEVCGRVFNRKDNLREHLRAHAGETXXXXXXXXXXXXXQFYGLTLLRIHERLH 215
GE+PY C E CG+ F+R D+L EH R H GE + +
Sbjct: 18 GEKPYACPE-CGKSFSRSDHLAEHQRTHTGE--------------------------KPY 50
Query: 216 GLIERTCYARFAAKETLNRHMKTHSGVKPHVCEYCEKAFIQASQLKAHMFHHTGENGHTC 275
E C F+ K+ L RH +TH+G KP+ C C K+F Q + L+AH HTGE + C
Sbjct: 51 KCPE--CGKSFSDKKDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYAC 108
Query: 276 ELCNKTFNRKARLELHMKYIHEGADPYQCDICRKTFIRKEDLTRHCLLHTGVKPHKCPIC 335
C K+F++ A L H + H G PY+C C K+F R+++L H HTG KP+KCP C
Sbjct: 109 PECGKSFSQLAHLRAHQR-THTGEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPEC 167
Query: 336 TKGFTMKSSLKIHLLTHT 353
K F+ + +L +H THT
Sbjct: 168 GKSFSRRDALNVHQRTHT 185
Score = 119 bits (297), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 63/157 (40%), Positives = 84/157 (53%), Gaps = 1/157 (0%)
Query: 222 CYARFAAKETLNRHMKTHSGVKPHVCEYCEKAFIQASQLKAHMFHHTGENGHTCELCNKT 281
C F+ + L H +TH+G KP+ C C K+F L H HTGE + C C K+
Sbjct: 27 CGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKPYKCPECGKS 86
Query: 282 FNRKARLELHMKYIHEGADPYQCDICRKTFIRKEDLTRHCLLHTGVKPHKCPICTKGFTM 341
F+++A L H + H G PY C C K+F + L H HTG KP+KCP C K F+
Sbjct: 87 FSQRANLRAHQR-THTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSR 145
Query: 342 KSSLKIHLLTHTKEPPKSCEVCGRAFIRQDCLIRHLR 378
+ +L H THT E P C CG++F R+D L H R
Sbjct: 146 EDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQR 182
Score = 117 bits (294), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 71/201 (35%), Positives = 98/201 (48%), Gaps = 30/201 (14%)
Query: 128 AEKLYECDICKNRFPSSGAMKKHRRKHTGERPYECKEVCGRVFNRKDNLREHLRAHAGET 187
EK Y C C F S + +H+R HTGE+PY+C E CG+ F+ K +L H R H GE
Sbjct: 18 GEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPE-CGKSFSDKKDLTRHQRTHTGE- 75
Query: 188 XXXXXXXXXXXXXQFYGLTLLRIHERLHGLIERTCYARFAAKETLNRHMKTHSGVKPHVC 247
+ + E C F+ + L H +TH+G KP+ C
Sbjct: 76 -------------------------KPYKCPE--CGKSFSQRANLRAHQRTHTGEKPYAC 108
Query: 248 EYCEKAFIQASQLKAHMFHHTGENGHTCELCNKTFNRKARLELHMKYIHEGADPYQCDIC 307
C K+F Q + L+AH HTGE + C C K+F+R+ L H + H G PY+C C
Sbjct: 109 PECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQR-THTGEKPYKCPEC 167
Query: 308 RKTFIRKEDLTRHCLLHTGVK 328
K+F R++ L H HTG K
Sbjct: 168 GKSFSRRDALNVHQRTHTGKK 188
Score = 108 bits (270), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 56/138 (40%), Positives = 76/138 (55%), Gaps = 1/138 (0%)
Query: 241 GVKPHVCEYCEKAFIQASQLKAHMFHHTGENGHTCELCNKTFNRKARLELHMKYIHEGAD 300
G KP+ C C K+F ++ L H HTGE + C C K+F+ K L H + H G
Sbjct: 18 GEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQR-THTGEK 76
Query: 301 PYQCDICRKTFIRKEDLTRHCLLHTGVKPHKCPICTKGFTMKSSLKIHLLTHTKEPPKSC 360
PY+C C K+F ++ +L H HTG KP+ CP C K F+ + L+ H THT E P C
Sbjct: 77 PYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKC 136
Query: 361 EVCGRAFIRQDCLIRHLR 378
CG++F R+D L H R
Sbjct: 137 PECGKSFSREDNLHTHQR 154
Score = 99.8 bits (247), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 51/119 (42%), Positives = 70/119 (58%), Gaps = 5/119 (4%)
Query: 269 GENGHTCELCNKTFNRKARLELHMKYIHEGADPYQCDICRKTFIRKEDLTRHCLLHTGVK 328
GE + C C K+F+R L H + H G PY+C C K+F K+DLTRH HTG K
Sbjct: 18 GEKPYACPECGKSFSRSDHLAEHQR-THTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEK 76
Query: 329 PHKCPICTKGFTMKSSLKIHLLTHTKEPPKSCEVCGRAFIRQDCLIRHLRQKHRSHLDE 387
P+KCP C K F+ +++L+ H THT E P +C CG++F + + HLR R+H E
Sbjct: 77 PYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQ----LAHLRAHQRTHTGE 131
Score = 95.9 bits (237), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 63/198 (31%), Positives = 88/198 (44%), Gaps = 40/198 (20%)
Query: 78 CGRVFNRKDNLREHLRAHAGETXXXXXXXXXXXXXQFYGLTLLRIHERLHAEKLYECDIC 137
CG+ F+R D+L EH R H GE K Y+C C
Sbjct: 27 CGKSFSRSDHLAEHQRTHTGE-------------------------------KPYKCPEC 55
Query: 138 KNRFPSSGAMKKHRRKHTGERPYECKEVCGRVFNRKDNLREHLRAHAGETXXXXXXXXXX 197
F + +H+R HTGE+PY+C E CG+ F+++ NLR H R H GE
Sbjct: 56 GKSFSDKKDLTRHQRTHTGEKPYKCPE-CGKSFSQRANLRAHQRTHTGE----KPYACPE 110
Query: 198 XXXQFYGLTLLRIHERLHGLIER----TCYARFAAKETLNRHMKTHSGVKPHVCEYCEKA 253
F L LR H+R H + C F+ ++ L+ H +TH+G KP+ C C K+
Sbjct: 111 CGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKS 170
Query: 254 FIQASQLKAHMFHHTGEN 271
F + L H HTG+
Sbjct: 171 FSRRDALNVHQRTHTGKK 188
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 45/84 (53%)
Query: 295 IHEGADPYQCDICRKTFIRKEDLTRHCLLHTGVKPHKCPICTKGFTMKSSLKIHLLTHTK 354
+ G PY C C K+F R + L H HTG KP+KCP C K F+ K L H THT
Sbjct: 15 LEPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTG 74
Query: 355 EPPKSCEVCGRAFIRQDCLIRHLR 378
E P C CG++F ++ L H R
Sbjct: 75 EKPYKCPECGKSFSQRANLRAHQR 98
Score = 36.6 bits (83), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 46/124 (37%), Gaps = 36/124 (29%)
Query: 35 VGEKTVPGHLCKGCYRIFTSQGYMLLSYKSKEEEKQICTYIKVCGRVFNRKDNLREHLRA 94
GEK + C C + F+ ++ ++ EK CG+ F+R+DNL H R
Sbjct: 101 TGEKP---YACPECGKSFSQLAHLRAHQRTHTGEKPY--KCPECGKSFSREDNLHTHQRT 155
Query: 95 HAGETXXXXXXXXXXXXXQFYGLTLLRIHERLHAEKLYECDICKNRFPSSGAMKKHRRKH 154
H G EK Y+C C F A+ H+R H
Sbjct: 156 HTG-------------------------------EKPYKCPECGKSFSRRDALNVHQRTH 184
Query: 155 TGER 158
TG++
Sbjct: 185 TGKK 188
>pdb|2JP9|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2JPA|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2PRT|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
Length = 119
Score = 79.7 bits (195), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 44/103 (42%), Positives = 57/103 (55%), Gaps = 5/103 (4%)
Query: 278 CNKTFNRKARLELHMKYIHEGADPYQCDI--CRKTFIRKEDLTRHCLLHTGVKPHKCPIC 335
CNK + + + L++H + H G PYQCD C + F R + L RH HTGVKP +C C
Sbjct: 14 CNKRYFKLSHLQMHSR-KHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTC 72
Query: 336 TKGFTMKSSLKIHLLTHTKEPPKSCE--VCGRAFIRQDCLIRH 376
+ F+ LK H THT E P SC C + F R D L+RH
Sbjct: 73 QRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRH 115
Score = 69.3 bits (168), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 34/77 (44%), Positives = 52/77 (67%), Gaps = 4/77 (5%)
Query: 113 QFYGLTLLRIHERLH-AEKLYECDI--CKNRFPSSGAMKKHRRKHTGERPYECKEVCGRV 169
+++ L+ L++H R H EK Y+CD C+ RF S +K+H+R+HTG +P++CK C R
Sbjct: 17 RYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCK-TCQRK 75
Query: 170 FNRKDNLREHLRAHAGE 186
F+R D+L+ H R H GE
Sbjct: 76 FSRSDHLKTHTRTHTGE 92
Score = 66.2 bits (160), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 56/107 (52%), Gaps = 5/107 (4%)
Query: 222 CYARFAAKETLNRHMKTHSGVKPHVCEY--CEKAFIQASQLKAHMFHHTGENGHTCELCN 279
C R+ L H + H+G KP+ C++ CE+ F ++ QLK H HTG C+ C
Sbjct: 14 CNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQ 73
Query: 280 KTFNRKARLELHMKYIHEGADPYQCDI--CRKTFIRKEDLTRHCLLH 324
+ F+R L+ H + H G P+ C C+K F R ++L RH +H
Sbjct: 74 RKFSRSDHLKTHTR-THTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 51/99 (51%), Gaps = 8/99 (8%)
Query: 201 QFYGLTLLRIHERLHGLIE------RTCYARFAAKETLNRHMKTHSGVKPHVCEYCEKAF 254
+++ L+ L++H R H + + C RF+ + L RH + H+GVKP C+ C++ F
Sbjct: 17 RYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKF 76
Query: 255 IQASQLKAHMFHHTGENGHTCEL--CNKTFNRKARLELH 291
++ LK H HTGE +C C K F R L H
Sbjct: 77 SRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRH 115
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 53/138 (38%), Gaps = 32/138 (23%)
Query: 47 GCYRIFTSQGYMLLSYKSKEEEKQICTYIKVCGRVFNRKDNLREHLRAHAGETXXXXXXX 106
GC + + ++ + + EK K C R F+R D L+ H R H G
Sbjct: 13 GCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGV-------- 64
Query: 107 XXXXXXQFYGLTLLRIHERLHAEKLYECDICKNRFPSSGAMKKHRRKHTGERPYECK-EV 165
K ++C C+ +F S +K H R HTGE+P+ C+
Sbjct: 65 -----------------------KPFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPS 101
Query: 166 CGRVFNRKDNLREHLRAH 183
C + F R D L H H
Sbjct: 102 CQKKFARSDELVRHHNMH 119
Score = 46.2 bits (108), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 37/82 (45%), Gaps = 4/82 (4%)
Query: 301 PYQCDI--CRKTFIRKEDLTRHCLLHTGVKPHKCPI--CTKGFTMKSSLKIHLLTHTKEP 356
P+ C C K + + L H HTG KP++C C + F+ LK H HT
Sbjct: 6 PFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVK 65
Query: 357 PKSCEVCGRAFIRQDCLIRHLR 378
P C+ C R F R D L H R
Sbjct: 66 PFQCKTCQRKFSRSDHLKTHTR 87
>pdb|1MEY|C Chain C, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
pdb|1MEY|F Chain F, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
pdb|1MEY|G Chain G, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
Length = 87
Score = 79.0 bits (193), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 37/78 (47%), Positives = 47/78 (60%)
Query: 301 PYQCDICRKTFIRKEDLTRHCLLHTGVKPHKCPICTKGFTMKSSLKIHLLTHTKEPPKSC 360
PY+C C K+F + +L +H HTG KP+KCP C K F+ S L+ H THT E P C
Sbjct: 4 PYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYKC 63
Query: 361 EVCGRAFIRQDCLIRHLR 378
CG++F R D L RH R
Sbjct: 64 PECGKSFSRSDHLSRHQR 81
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
Query: 270 ENGHTCELCNKTFNRKARLELHMKYIHEGADPYQCDICRKTFIRKEDLTRHCLLHTGVKP 329
E + C C K+F++ + L+ H + H G PY+C C K+F + DL +H HTG KP
Sbjct: 2 EKPYKCPECGKSFSQSSNLQKHQR-THTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKP 60
Query: 330 HKCPICTKGFTMKSSLKIHLLTH 352
+KCP C K F+ L H TH
Sbjct: 61 YKCPECGKSFSRSDHLSRHQRTH 83
Score = 68.6 bits (166), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 49/86 (56%), Gaps = 1/86 (1%)
Query: 243 KPHVCEYCEKAFIQASQLKAHMFHHTGENGHTCELCNKTFNRKARLELHMKYIHEGADPY 302
KP+ C C K+F Q+S L+ H HTGE + C C K+F++ + L+ H + H G PY
Sbjct: 3 KPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQR-THTGEKPY 61
Query: 303 QCDICRKTFIRKEDLTRHCLLHTGVK 328
+C C K+F R + L+RH H K
Sbjct: 62 KCPECGKSFSRSDHLSRHQRTHQNKK 87
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 50/106 (47%), Gaps = 32/106 (30%)
Query: 78 CGRVFNRKDNLREHLRAHAGETXXXXXXXXXXXXXQFYGLTLLRIHERLHAEKLYECDIC 137
CG+ F++ NL++H R H GE K Y+C C
Sbjct: 10 CGKSFSQSSNLQKHQRTHTGE-------------------------------KPYKCPEC 38
Query: 138 KNRFPSSGAMKKHRRKHTGERPYECKEVCGRVFNRKDNLREHLRAH 183
F S ++KH+R HTGE+PY+C E CG+ F+R D+L H R H
Sbjct: 39 GKSFSQSSDLQKHQRTHTGEKPYKCPE-CGKSFSRSDHLSRHQRTH 83
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 40/72 (55%)
Query: 222 CYARFAAKETLNRHMKTHSGVKPHVCEYCEKAFIQASQLKAHMFHHTGENGHTCELCNKT 281
C F+ L +H +TH+G KP+ C C K+F Q+S L+ H HTGE + C C K+
Sbjct: 10 CGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYKCPECGKS 69
Query: 282 FNRKARLELHMK 293
F+R L H +
Sbjct: 70 FSRSDHLSRHQR 81
Score = 60.1 bits (144), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 39/58 (67%), Gaps = 1/58 (1%)
Query: 129 EKLYECDICKNRFPSSGAMKKHRRKHTGERPYECKEVCGRVFNRKDNLREHLRAHAGE 186
EK Y+C C F S ++KH+R HTGE+PY+C E CG+ F++ +L++H R H GE
Sbjct: 2 EKPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPE-CGKSFSQSSDLQKHQRTHTGE 58
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 49/111 (44%), Gaps = 29/111 (26%)
Query: 157 ERPYECKEVCGRVFNRKDNLREHLRAHAGETXXXXXXXXXXXXXQFYGLTLLRIHERLHG 216
E+PY+C E CG+ F++ NL++H R H GE + +
Sbjct: 2 EKPYKCPE-CGKSFSQSSNLQKHQRTHTGE--------------------------KPYK 34
Query: 217 LIERTCYARFAAKETLNRHMKTHSGVKPHVCEYCEKAFIQASQLKAHMFHH 267
E C F+ L +H +TH+G KP+ C C K+F ++ L H H
Sbjct: 35 CPE--CGKSFSQSSDLQKHQRTHTGEKPYKCPECGKSFSRSDHLSRHQRTH 83
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 31/51 (60%)
Query: 328 KPHKCPICTKGFTMKSSLKIHLLTHTKEPPKSCEVCGRAFIRQDCLIRHLR 378
KP+KCP C K F+ S+L+ H THT E P C CG++F + L +H R
Sbjct: 3 KPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQR 53
>pdb|1A1I|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site)
pdb|1A1J|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt Site)
pdb|1A1K|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site)
Length = 90
Score = 75.5 bits (184), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 40/86 (46%), Positives = 50/86 (58%), Gaps = 6/86 (6%)
Query: 301 PYQCDI--CRKTFIRKEDLTRHCLLHTGVKPHKCPICTKGFTMKSSLKIHLLTHTKEPPK 358
PY C + C + F R DLTRH +HTG KP +C IC + F+ L H+ THT E P
Sbjct: 4 PYACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPF 63
Query: 359 SCEVCGRAFIRQDCLIR----HLRQK 380
+C++CGR F R D R HLRQK
Sbjct: 64 ACDICGRKFARSDERKRHTKIHLRQK 89
Score = 62.8 bits (151), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
Query: 276 ELCNKTFNRKARLELHMKYIHEGADPYQCDICRKTFIRKEDLTRHCLLHTGVKPHKCPIC 335
E C++ F+R A L H++ IH G P+QC IC + F R + LT H HTG KP C IC
Sbjct: 10 ESCDRRFSRSADLTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDIC 68
Query: 336 TKGFTMKSSLKIHLLTHTKE 355
+ F K H H ++
Sbjct: 69 GRKFARSDERKRHTKIHLRQ 88
Score = 57.0 bits (136), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 41/82 (50%)
Query: 212 ERLHGLIERTCYARFAAKETLNRHMKTHSGVKPHVCEYCEKAFIQASQLKAHMFHHTGEN 271
ER + +C RF+ L RH++ H+G KP C C + F ++ L H+ HTGE
Sbjct: 2 ERPYACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 272 GHTCELCNKTFNRKARLELHMK 293
C++C + F R + H K
Sbjct: 62 PFACDICGRKFARSDERKRHTK 83
Score = 53.1 bits (126), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 38/60 (63%), Gaps = 3/60 (5%)
Query: 129 EKLYECDI--CKNRFPSSGAMKKHRRKHTGERPYECKEVCGRVFNRKDNLREHLRAHAGE 186
E+ Y C + C RF S + +H R HTG++P++C+ +C R F+R D+L H+R H GE
Sbjct: 2 ERPYACPVESCDRRFSRSADLTRHIRIHTGQKPFQCR-ICMRNFSRSDHLTTHIRTHTGE 60
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 46/109 (42%), Gaps = 32/109 (29%)
Query: 75 IKVCGRVFNRKDNLREHLRAHAGETXXXXXXXXXXXXXQFYGLTLLRIHERLHAEKLYEC 134
++ C R F+R +L H+R H G+ K ++C
Sbjct: 9 VESCDRRFSRSADLTRHIRIHTGQ-------------------------------KPFQC 37
Query: 135 DICKNRFPSSGAMKKHRRKHTGERPYECKEVCGRVFNRKDNLREHLRAH 183
IC F S + H R HTGE+P+ C ++CGR F R D + H + H
Sbjct: 38 RICMRNFSRSDHLTTHIRTHTGEKPFAC-DICGRKFARSDERKRHTKIH 85
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 44/108 (40%), Gaps = 29/108 (26%)
Query: 157 ERPYECK-EVCGRVFNRKDNLREHLRAHAGETXXXXXXXXXXXXXQFYGLTLLRIHERLH 215
ERPY C E C R F+R +L H+R H G+
Sbjct: 2 ERPYACPVESCDRRFSRSADLTRHIRIHTGQKPFQC------------------------ 37
Query: 216 GLIERTCYARFAAKETLNRHMKTHSGVKPHVCEYCEKAFIQASQLKAH 263
R C F+ + L H++TH+G KP C+ C + F ++ + K H
Sbjct: 38 ----RICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRH 81
>pdb|1AAY|A Chain A, Zif268 Zinc Finger-Dna Complex
pdb|1A1L|A Chain A, Zif268 Zinc Finger-Dna Complex (Gcac Site)
Length = 90
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 39/86 (45%), Positives = 51/86 (59%), Gaps = 6/86 (6%)
Query: 301 PYQCDI--CRKTFIRKEDLTRHCLLHTGVKPHKCPICTKGFTMKSSLKIHLLTHTKEPPK 358
PY C + C + F R ++LTRH +HTG KP +C IC + F+ L H+ THT E P
Sbjct: 4 PYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPF 63
Query: 359 SCEVCGRAFIRQDCLIR----HLRQK 380
+C++CGR F R D R HLRQK
Sbjct: 64 ACDICGRKFARSDERKRHTKIHLRQK 89
Score = 60.8 bits (146), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 276 ELCNKTFNRKARLELHMKYIHEGADPYQCDICRKTFIRKEDLTRHCLLHTGVKPHKCPIC 335
E C++ F+R L H++ IH G P+QC IC + F R + LT H HTG KP C IC
Sbjct: 10 ESCDRRFSRSDELTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDIC 68
Query: 336 TKGFTMKSSLKIHLLTHTKE 355
+ F K H H ++
Sbjct: 69 GRKFARSDERKRHTKIHLRQ 88
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 42/82 (51%)
Query: 212 ERLHGLIERTCYARFAAKETLNRHMKTHSGVKPHVCEYCEKAFIQASQLKAHMFHHTGEN 271
ER + +C RF+ + L RH++ H+G KP C C + F ++ L H+ HTGE
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 272 GHTCELCNKTFNRKARLELHMK 293
C++C + F R + H K
Sbjct: 62 PFACDICGRKFARSDERKRHTK 83
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 46/109 (42%), Gaps = 32/109 (29%)
Query: 75 IKVCGRVFNRKDNLREHLRAHAGETXXXXXXXXXXXXXQFYGLTLLRIHERLHAEKLYEC 134
++ C R F+R D L H+R H G+ K ++C
Sbjct: 9 VESCDRRFSRSDELTRHIRIHTGQ-------------------------------KPFQC 37
Query: 135 DICKNRFPSSGAMKKHRRKHTGERPYECKEVCGRVFNRKDNLREHLRAH 183
IC F S + H R HTGE+P+ C ++CGR F R D + H + H
Sbjct: 38 RICMRNFSRSDHLTTHIRTHTGEKPFAC-DICGRKFARSDERKRHTKIH 85
Score = 52.4 bits (124), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 38/60 (63%), Gaps = 3/60 (5%)
Query: 129 EKLYECDI--CKNRFPSSGAMKKHRRKHTGERPYECKEVCGRVFNRKDNLREHLRAHAGE 186
E+ Y C + C RF S + +H R HTG++P++C+ +C R F+R D+L H+R H GE
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCR-ICMRNFSRSDHLTTHIRTHTGE 60
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 44/108 (40%), Gaps = 29/108 (26%)
Query: 157 ERPYECK-EVCGRVFNRKDNLREHLRAHAGETXXXXXXXXXXXXXQFYGLTLLRIHERLH 215
ERPY C E C R F+R D L H+R H G+
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQC------------------------ 37
Query: 216 GLIERTCYARFAAKETLNRHMKTHSGVKPHVCEYCEKAFIQASQLKAH 263
R C F+ + L H++TH+G KP C+ C + F ++ + K H
Sbjct: 38 ----RICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRH 81
>pdb|1JK1|A Chain A, Zif268 D20a Mutant Bound To Wt Dna Site
pdb|1JK2|A Chain A, Zif268 D20a Mutant Bound To The Gct Dna Site
Length = 90
Score = 73.6 bits (179), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 39/86 (45%), Positives = 50/86 (58%), Gaps = 6/86 (6%)
Query: 301 PYQCDI--CRKTFIRKEDLTRHCLLHTGVKPHKCPICTKGFTMKSSLKIHLLTHTKEPPK 358
PY C + C + F R +LTRH +HTG KP +C IC + F+ L H+ THT E P
Sbjct: 4 PYACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPF 63
Query: 359 SCEVCGRAFIRQDCLIR----HLRQK 380
+C++CGR F R D R HLRQK
Sbjct: 64 ACDICGRKFARSDERKRHTKIHLRQK 89
Score = 63.2 bits (152), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
Query: 276 ELCNKTFNRKARLELHMKYIHEGADPYQCDICRKTFIRKEDLTRHCLLHTGVKPHKCPIC 335
E C++ F+R A L H++ IH G P+QC IC + F R + LT H HTG KP C IC
Sbjct: 10 ESCDRRFSRSAELTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDIC 68
Query: 336 TKGFTMKSSLKIHLLTHTKE 355
+ F K H H ++
Sbjct: 69 GRKFARSDERKRHTKIHLRQ 88
Score = 56.6 bits (135), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 41/82 (50%)
Query: 212 ERLHGLIERTCYARFAAKETLNRHMKTHSGVKPHVCEYCEKAFIQASQLKAHMFHHTGEN 271
ER + +C RF+ L RH++ H+G KP C C + F ++ L H+ HTGE
Sbjct: 2 ERPYACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 272 GHTCELCNKTFNRKARLELHMK 293
C++C + F R + H K
Sbjct: 62 PFACDICGRKFARSDERKRHTK 83
Score = 53.1 bits (126), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 38/60 (63%), Gaps = 3/60 (5%)
Query: 129 EKLYECDI--CKNRFPSSGAMKKHRRKHTGERPYECKEVCGRVFNRKDNLREHLRAHAGE 186
E+ Y C + C RF S + +H R HTG++P++C+ +C R F+R D+L H+R H GE
Sbjct: 2 ERPYACPVESCDRRFSRSAELTRHIRIHTGQKPFQCR-ICMRNFSRSDHLTTHIRTHTGE 60
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 45/109 (41%), Gaps = 32/109 (29%)
Query: 75 IKVCGRVFNRKDNLREHLRAHAGETXXXXXXXXXXXXXQFYGLTLLRIHERLHAEKLYEC 134
++ C R F+R L H+R H G+ K ++C
Sbjct: 9 VESCDRRFSRSAELTRHIRIHTGQ-------------------------------KPFQC 37
Query: 135 DICKNRFPSSGAMKKHRRKHTGERPYECKEVCGRVFNRKDNLREHLRAH 183
IC F S + H R HTGE+P+ C ++CGR F R D + H + H
Sbjct: 38 RICMRNFSRSDHLTTHIRTHTGEKPFAC-DICGRKFARSDERKRHTKIH 85
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 43/108 (39%), Gaps = 29/108 (26%)
Query: 157 ERPYECK-EVCGRVFNRKDNLREHLRAHAGETXXXXXXXXXXXXXQFYGLTLLRIHERLH 215
ERPY C E C R F+R L H+R H G+
Sbjct: 2 ERPYACPVESCDRRFSRSAELTRHIRIHTGQKPFQC------------------------ 37
Query: 216 GLIERTCYARFAAKETLNRHMKTHSGVKPHVCEYCEKAFIQASQLKAH 263
R C F+ + L H++TH+G KP C+ C + F ++ + K H
Sbjct: 38 ----RICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRH 81
>pdb|2KMK|A Chain A, Gfi-1 Zinc Fingers 3-5 Complexed With Dna
Length = 82
Score = 73.2 bits (178), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 34/79 (43%), Positives = 46/79 (58%), Gaps = 1/79 (1%)
Query: 275 CELCNKTFNRKARLELHMKYIHEGADPYQCDICRKTFIRKEDLTRHCLLHTGVKPHKCPI 334
C++C K+F R + L H+ IH PY C C K F +K D+ +H +HTG KPHKC +
Sbjct: 4 CKICGKSFKRSSTLSTHL-LIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQV 62
Query: 335 CTKGFTMKSSLKIHLLTHT 353
C K F+ S+L H HT
Sbjct: 63 CGKAFSQSSNLITHSRKHT 81
Score = 70.1 bits (170), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 45/78 (57%)
Query: 302 YQCDICRKTFIRKEDLTRHCLLHTGVKPHKCPICTKGFTMKSSLKIHLLTHTKEPPKSCE 361
+ C IC K+F R L+ H L+H+ +P+ C C K F KS +K H HT E P C+
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQ 61
Query: 362 VCGRAFIRQDCLIRHLRQ 379
VCG+AF + LI H R+
Sbjct: 62 VCGKAFSQSSNLITHSRK 79
Score = 63.5 bits (153), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 42/74 (56%)
Query: 220 RTCYARFAAKETLNRHMKTHSGVKPHVCEYCEKAFIQASQLKAHMFHHTGENGHTCELCN 279
+ C F TL+ H+ HS +P+ C+YC K F Q S +K H F HTGE H C++C
Sbjct: 5 KICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCG 64
Query: 280 KTFNRKARLELHMK 293
K F++ + L H +
Sbjct: 65 KAFSQSSNLITHSR 78
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 1/80 (1%)
Query: 247 CEYCEKAFIQASQLKAHMFHHTGENGHTCELCNKTFNRKARLELHMKYIHEGADPYQCDI 306
C+ C K+F ++S L H+ H+ + C+ C K F++K+ ++ H +IH G P++C +
Sbjct: 4 CKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHT-FIHTGEKPHKCQV 62
Query: 307 CRKTFIRKEDLTRHCLLHTG 326
C K F + +L H HTG
Sbjct: 63 CGKAFSQSSNLITHSRKHTG 82
Score = 56.6 bits (135), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 45/110 (40%), Gaps = 32/110 (29%)
Query: 76 KVCGRVFNRKDNLREHLRAHAGETXXXXXXXXXXXXXQFYGLTLLRIHERLHAEKLYECD 135
K+CG+ F R L HL H+ + Y C
Sbjct: 5 KICGKSFKRSSTLSTHLLIHSDT-------------------------------RPYPCQ 33
Query: 136 ICKNRFPSSGAMKKHRRKHTGERPYECKEVCGRVFNRKDNLREHLRAHAG 185
C RF MKKH HTGE+P++C +VCG+ F++ NL H R H G
Sbjct: 34 YCGKRFHQKSDMKKHTFIHTGEKPHKC-QVCGKAFSQSSNLITHSRKHTG 82
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 43/110 (39%), Gaps = 29/110 (26%)
Query: 160 YECKEVCGRVFNRKDNLREHLRAHAGETXXXXXXXXXXXXXQFYGLTLLRIHERLHGLIE 219
++CK +CG+ F R L HL IH
Sbjct: 2 FDCK-ICGKSFKRSSTLSTHLL----------------------------IHSDTRPYPC 32
Query: 220 RTCYARFAAKETLNRHMKTHSGVKPHVCEYCEKAFIQASQLKAHMFHHTG 269
+ C RF K + +H H+G KPH C+ C KAF Q+S L H HTG
Sbjct: 33 QYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGKAFSQSSNLITHSRKHTG 82
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 132 YECDICKNRFPSSGAMKKHRRKHTGERPYECKEVCGRVFNRKDNLREHLRAHAGE 186
++C IC F S + H H+ RPY C + CG+ F++K ++++H H GE
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPC-QYCGKRFHQKSDMKKHTFIHTGE 55
>pdb|1P47|A Chain A, Crystal Structure Of Tandem Zif268 Molecules Complexed To
Dna
pdb|1P47|B Chain B, Crystal Structure Of Tandem Zif268 Molecules Complexed To
Dna
Length = 87
Score = 73.2 bits (178), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 35/80 (43%), Positives = 48/80 (60%), Gaps = 2/80 (2%)
Query: 301 PYQCDI--CRKTFIRKEDLTRHCLLHTGVKPHKCPICTKGFTMKSSLKIHLLTHTKEPPK 358
PY C + C + F R ++LTRH +HTG KP +C IC + F+ L H+ THT E P
Sbjct: 3 PYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPF 62
Query: 359 SCEVCGRAFIRQDCLIRHLR 378
+C++CGR F R D RH +
Sbjct: 63 ACDICGRKFARSDERKRHTK 82
Score = 60.8 bits (146), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 276 ELCNKTFNRKARLELHMKYIHEGADPYQCDICRKTFIRKEDLTRHCLLHTGVKPHKCPIC 335
E C++ F+R L H++ IH G P+QC IC + F R + LT H HTG KP C IC
Sbjct: 9 ESCDRRFSRSDELTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDIC 67
Query: 336 TKGFTMKSSLKIHLLTHTKE 355
+ F K H H ++
Sbjct: 68 GRKFARSDERKRHTKIHLRQ 87
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 42/82 (51%)
Query: 212 ERLHGLIERTCYARFAAKETLNRHMKTHSGVKPHVCEYCEKAFIQASQLKAHMFHHTGEN 271
ER + +C RF+ + L RH++ H+G KP C C + F ++ L H+ HTGE
Sbjct: 1 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 60
Query: 272 GHTCELCNKTFNRKARLELHMK 293
C++C + F R + H K
Sbjct: 61 PFACDICGRKFARSDERKRHTK 82
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 46/109 (42%), Gaps = 32/109 (29%)
Query: 75 IKVCGRVFNRKDNLREHLRAHAGETXXXXXXXXXXXXXQFYGLTLLRIHERLHAEKLYEC 134
++ C R F+R D L H+R H G+ K ++C
Sbjct: 8 VESCDRRFSRSDELTRHIRIHTGQ-------------------------------KPFQC 36
Query: 135 DICKNRFPSSGAMKKHRRKHTGERPYECKEVCGRVFNRKDNLREHLRAH 183
IC F S + H R HTGE+P+ C ++CGR F R D + H + H
Sbjct: 37 RICMRNFSRSDHLTTHIRTHTGEKPFAC-DICGRKFARSDERKRHTKIH 84
Score = 52.4 bits (124), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 38/60 (63%), Gaps = 3/60 (5%)
Query: 129 EKLYECDI--CKNRFPSSGAMKKHRRKHTGERPYECKEVCGRVFNRKDNLREHLRAHAGE 186
E+ Y C + C RF S + +H R HTG++P++C+ +C R F+R D+L H+R H GE
Sbjct: 1 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCR-ICMRNFSRSDHLTTHIRTHTGE 59
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 44/108 (40%), Gaps = 29/108 (26%)
Query: 157 ERPYECK-EVCGRVFNRKDNLREHLRAHAGETXXXXXXXXXXXXXQFYGLTLLRIHERLH 215
ERPY C E C R F+R D L H+R H G+
Sbjct: 1 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQC------------------------ 36
Query: 216 GLIERTCYARFAAKETLNRHMKTHSGVKPHVCEYCEKAFIQASQLKAH 263
R C F+ + L H++TH+G KP C+ C + F ++ + K H
Sbjct: 37 ----RICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRH 80
>pdb|1ZAA|C Chain C, Zinc Finger-Dna Recognition: Crystal Structure Of A
Zif268- Dna Complex At 2.1 Angstroms
Length = 87
Score = 72.8 bits (177), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 35/80 (43%), Positives = 48/80 (60%), Gaps = 2/80 (2%)
Query: 301 PYQCDI--CRKTFIRKEDLTRHCLLHTGVKPHKCPICTKGFTMKSSLKIHLLTHTKEPPK 358
PY C + C + F R ++LTRH +HTG KP +C IC + F+ L H+ THT E P
Sbjct: 4 PYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPF 63
Query: 359 SCEVCGRAFIRQDCLIRHLR 378
+C++CGR F R D RH +
Sbjct: 64 ACDICGRKFARSDERKRHTK 83
Score = 60.1 bits (144), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
Query: 276 ELCNKTFNRKARLELHMKYIHEGADPYQCDICRKTFIRKEDLTRHCLLHTGVKPHKCPIC 335
E C++ F+R L H++ IH G P+QC IC + F R + LT H HTG KP C IC
Sbjct: 10 ESCDRRFSRSDELTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDIC 68
Query: 336 TKGFTMKSSLKIHLLTHTK 354
+ F K H H +
Sbjct: 69 GRKFARSDERKRHTKIHLR 87
Score = 59.7 bits (143), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 43/83 (51%)
Query: 211 HERLHGLIERTCYARFAAKETLNRHMKTHSGVKPHVCEYCEKAFIQASQLKAHMFHHTGE 270
HER + +C RF+ + L RH++ H+G KP C C + F ++ L H+ HTGE
Sbjct: 1 HERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Query: 271 NGHTCELCNKTFNRKARLELHMK 293
C++C + F R + H K
Sbjct: 61 KPFACDICGRKFARSDERKRHTK 83
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 46/109 (42%), Gaps = 32/109 (29%)
Query: 75 IKVCGRVFNRKDNLREHLRAHAGETXXXXXXXXXXXXXQFYGLTLLRIHERLHAEKLYEC 134
++ C R F+R D L H+R H G+ K ++C
Sbjct: 9 VESCDRRFSRSDELTRHIRIHTGQ-------------------------------KPFQC 37
Query: 135 DICKNRFPSSGAMKKHRRKHTGERPYECKEVCGRVFNRKDNLREHLRAH 183
IC F S + H R HTGE+P+ C ++CGR F R D + H + H
Sbjct: 38 RICMRNFSRSDHLTTHIRTHTGEKPFAC-DICGRKFARSDERKRHTKIH 85
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 38/60 (63%), Gaps = 3/60 (5%)
Query: 129 EKLYECDI--CKNRFPSSGAMKKHRRKHTGERPYECKEVCGRVFNRKDNLREHLRAHAGE 186
E+ Y C + C RF S + +H R HTG++P++C+ +C R F+R D+L H+R H GE
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCR-ICMRNFSRSDHLTTHIRTHTGE 60
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 44/108 (40%), Gaps = 29/108 (26%)
Query: 157 ERPYECK-EVCGRVFNRKDNLREHLRAHAGETXXXXXXXXXXXXXQFYGLTLLRIHERLH 215
ERPY C E C R F+R D L H+R H G+
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQC------------------------ 37
Query: 216 GLIERTCYARFAAKETLNRHMKTHSGVKPHVCEYCEKAFIQASQLKAH 263
R C F+ + L H++TH+G KP C+ C + F ++ + K H
Sbjct: 38 ----RICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRH 81
>pdb|1A1F|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site)
pdb|1A1G|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt Site)
Length = 90
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/86 (44%), Positives = 49/86 (56%), Gaps = 6/86 (6%)
Query: 301 PYQCDI--CRKTFIRKEDLTRHCLLHTGVKPHKCPICTKGFTMKSSLKIHLLTHTKEPPK 358
PY C + C + F +LTRH +HTG KP +C IC + F+ L H+ THT E P
Sbjct: 4 PYACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPF 63
Query: 359 SCEVCGRAFIRQDCLIR----HLRQK 380
+C++CGR F R D R HLRQK
Sbjct: 64 ACDICGRKFARSDERKRHTKIHLRQK 89
Score = 59.3 bits (142), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 276 ELCNKTFNRKARLELHMKYIHEGADPYQCDICRKTFIRKEDLTRHCLLHTGVKPHKCPIC 335
E C++ F+ + L H++ IH G P+QC IC + F R + LT H HTG KP C IC
Sbjct: 10 ESCDRRFSDSSNLTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDIC 68
Query: 336 TKGFTMKSSLKIHLLTHTKE 355
+ F K H H ++
Sbjct: 69 GRKFARSDERKRHTKIHLRQ 88
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 41/82 (50%)
Query: 212 ERLHGLIERTCYARFAAKETLNRHMKTHSGVKPHVCEYCEKAFIQASQLKAHMFHHTGEN 271
ER + +C RF+ L RH++ H+G KP C C + F ++ L H+ HTGE
Sbjct: 2 ERPYACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 272 GHTCELCNKTFNRKARLELHMK 293
C++C + F R + H K
Sbjct: 62 PFACDICGRKFARSDERKRHTK 83
Score = 53.1 bits (126), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 38/60 (63%), Gaps = 3/60 (5%)
Query: 129 EKLYECDI--CKNRFPSSGAMKKHRRKHTGERPYECKEVCGRVFNRKDNLREHLRAHAGE 186
E+ Y C + C RF S + +H R HTG++P++C+ +C R F+R D+L H+R H GE
Sbjct: 2 ERPYACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCR-ICMRNFSRSDHLTTHIRTHTGE 60
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 45/109 (41%), Gaps = 32/109 (29%)
Query: 75 IKVCGRVFNRKDNLREHLRAHAGETXXXXXXXXXXXXXQFYGLTLLRIHERLHAEKLYEC 134
++ C R F+ NL H+R H G+ K ++C
Sbjct: 9 VESCDRRFSDSSNLTRHIRIHTGQ-------------------------------KPFQC 37
Query: 135 DICKNRFPSSGAMKKHRRKHTGERPYECKEVCGRVFNRKDNLREHLRAH 183
IC F S + H R HTGE+P+ C ++CGR F R D + H + H
Sbjct: 38 RICMRNFSRSDHLTTHIRTHTGEKPFAC-DICGRKFARSDERKRHTKIH 85
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 43/108 (39%), Gaps = 29/108 (26%)
Query: 157 ERPYECK-EVCGRVFNRKDNLREHLRAHAGETXXXXXXXXXXXXXQFYGLTLLRIHERLH 215
ERPY C E C R F+ NL H+R H G+
Sbjct: 2 ERPYACPVESCDRRFSDSSNLTRHIRIHTGQKPFQC------------------------ 37
Query: 216 GLIERTCYARFAAKETLNRHMKTHSGVKPHVCEYCEKAFIQASQLKAH 263
R C F+ + L H++TH+G KP C+ C + F ++ + K H
Sbjct: 38 ----RICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRH 81
>pdb|1A1H|A Chain A, Qgsr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site)
Length = 90
Score = 70.9 bits (172), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 38/86 (44%), Positives = 49/86 (56%), Gaps = 6/86 (6%)
Query: 301 PYQCDI--CRKTFIRKEDLTRHCLLHTGVKPHKCPICTKGFTMKSSLKIHLLTHTKEPPK 358
PY C + C + F + LTRH +HTG KP +C IC + F+ L H+ THT E P
Sbjct: 4 PYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPF 63
Query: 359 SCEVCGRAFIRQDCLIR----HLRQK 380
+C++CGR F R D R HLRQK
Sbjct: 64 ACDICGRKFARSDERKRHTKIHLRQK 89
Score = 60.1 bits (144), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 276 ELCNKTFNRKARLELHMKYIHEGADPYQCDICRKTFIRKEDLTRHCLLHTGVKPHKCPIC 335
E C++ F++ L H++ IH G P+QC IC + F R + LT H HTG KP C IC
Sbjct: 10 ESCDRRFSQSGSLTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDIC 68
Query: 336 TKGFTMKSSLKIHLLTHTKE 355
+ F K H H ++
Sbjct: 69 GRKFARSDERKRHTKIHLRQ 88
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 42/82 (51%)
Query: 212 ERLHGLIERTCYARFAAKETLNRHMKTHSGVKPHVCEYCEKAFIQASQLKAHMFHHTGEN 271
ER + +C RF+ +L RH++ H+G KP C C + F ++ L H+ HTGE
Sbjct: 2 ERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 272 GHTCELCNKTFNRKARLELHMK 293
C++C + F R + H K
Sbjct: 62 PFACDICGRKFARSDERKRHTK 83
Score = 56.6 bits (135), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 40/60 (66%), Gaps = 3/60 (5%)
Query: 129 EKLYECDI--CKNRFPSSGAMKKHRRKHTGERPYECKEVCGRVFNRKDNLREHLRAHAGE 186
E+ Y C + C RF SG++ +H R HTG++P++C+ +C R F+R D+L H+R H GE
Sbjct: 2 ERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCR-ICMRNFSRSDHLTTHIRTHTGE 60
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 46/109 (42%), Gaps = 32/109 (29%)
Query: 75 IKVCGRVFNRKDNLREHLRAHAGETXXXXXXXXXXXXXQFYGLTLLRIHERLHAEKLYEC 134
++ C R F++ +L H+R H G+ K ++C
Sbjct: 9 VESCDRRFSQSGSLTRHIRIHTGQ-------------------------------KPFQC 37
Query: 135 DICKNRFPSSGAMKKHRRKHTGERPYECKEVCGRVFNRKDNLREHLRAH 183
IC F S + H R HTGE+P+ C ++CGR F R D + H + H
Sbjct: 38 RICMRNFSRSDHLTTHIRTHTGEKPFAC-DICGRKFARSDERKRHTKIH 85
Score = 46.2 bits (108), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 44/108 (40%), Gaps = 29/108 (26%)
Query: 157 ERPYECK-EVCGRVFNRKDNLREHLRAHAGETXXXXXXXXXXXXXQFYGLTLLRIHERLH 215
ERPY C E C R F++ +L H+R H G+
Sbjct: 2 ERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQC------------------------ 37
Query: 216 GLIERTCYARFAAKETLNRHMKTHSGVKPHVCEYCEKAFIQASQLKAH 263
R C F+ + L H++TH+G KP C+ C + F ++ + K H
Sbjct: 38 ----RICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRH 81
Score = 33.9 bits (76), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 40/109 (36%), Gaps = 33/109 (30%)
Query: 46 KGCYRIFTSQGYMLLSYKSKEEEKQICTYIKVCGRVFNRKDNLREHLRAHAGETXXXXXX 105
+ C R F+ G + + +K ++C R F+R D+L H+R H G
Sbjct: 10 ESCDRRFSQSGSLTRHIRIHTGQKPF--QCRICMRNFSRSDHLTTHIRTHTG-------- 59
Query: 106 XXXXXXXQFYGLTLLRIHERLHAEKLYECDICKNRFPSSGAMKKHRRKH 154
EK + CDIC +F S K+H + H
Sbjct: 60 -----------------------EKPFACDICGRKFARSDERKRHTKIH 85
>pdb|2DLQ|A Chain A, Solution Structure Of The Tandem Four Zf-C2h2 Domain
Repeats Of Murine Gli-Kruppel Family Member Hkr3
Length = 124
Score = 68.9 bits (167), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 40/110 (36%), Positives = 58/110 (52%), Gaps = 5/110 (4%)
Query: 221 TCYARFAAKETLNRHMKTHSGVKPHVCEYCEKAFIQASQLKAHMFHHT---GENGHTCEL 277
TC+ +F +K L H + H+G KP C C K + + L H + E TC +
Sbjct: 12 TCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSV 71
Query: 278 CNKTFNRKARLELHMKYIHEGADPYQCDICRKTFIRKEDLTRHCL-LHTG 326
C +TF R+ L LHM H G PY+C C + F++K+DL H + LH+G
Sbjct: 72 CQETFRRRMELRLHM-VSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSG 120
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 39/113 (34%), Positives = 57/113 (50%), Gaps = 5/113 (4%)
Query: 240 SGVKPHVCEYCEKAFIQASQLKAHMFHHTGENGHTCELCNKTFNRKARLELH--MKYIHE 297
SGV+ C C K F+ LK H HTGE C C K + RK L H ++
Sbjct: 6 SGVE---CPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNR 62
Query: 298 GADPYQCDICRKTFIRKEDLTRHCLLHTGVKPHKCPICTKGFTMKSSLKIHLL 350
+ C +C++TF R+ +L H + HTG P+KC C++ F K L+ H++
Sbjct: 63 SEQVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMI 115
Score = 65.1 bits (157), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 69/168 (41%), Gaps = 54/168 (32%)
Query: 133 ECDICKNRFPSSGAMKKHRRKHTGERPYECKEVCGRVFNRKDNLREHLRAHAGETXXXXX 192
EC C +F S +K H RKHTGE+P+EC + CG+ + RK+NL EH
Sbjct: 9 ECPTCHKKFLSKYYLKVHNRKHTGEKPFECPK-CGKCYFRKENLLEH------------- 54
Query: 193 XXXXXXXXQFYGLTLLRIHERLHGLIERTCYARFAAKETLNRHMKTHSGVKPHVCEYCEK 252
A+ +NR + + C C++
Sbjct: 55 ----------------------------------EARNCMNRSEQVFT------CSVCQE 74
Query: 253 AFIQASQLKAHMFHHTGENGHTCELCNKTFNRKARLELHMKYIHEGAD 300
F + +L+ HM HTGE + C C++ F +K L+ HM +H G
Sbjct: 75 TFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSGPS 122
Score = 63.2 bits (152), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 64/118 (54%), Gaps = 6/118 (5%)
Query: 268 TGENGHTCELCNKTFNRKARLELHMKYIHEGADPYQCDICRKTFIRKEDL----TRHCLL 323
+G +G C C+K F K L++H + H G P++C C K + RKE+L R+C+
Sbjct: 3 SGSSGVECPTCHKKFLSKYYLKVHNRK-HTGEKPFECPKCGKCYFRKENLLEHEARNCM- 60
Query: 324 HTGVKPHKCPICTKGFTMKSSLKIHLLTHTKEPPKSCEVCGRAFIRQDCLIRHLRQKH 381
+ + C +C + F + L++H+++HT E P C C + F+++ L H+ + H
Sbjct: 61 NRSEQVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLH 118
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 36/153 (23%), Positives = 63/153 (41%), Gaps = 32/153 (20%)
Query: 36 GEKTVPGHLCKGCYRIFTSQGYMLLSYKSKEEEKQICTYIKVCGRVFNRKDNLREHLRAH 95
G G C C++ F S+ Y+ + + EK CG+ + RK+NL EH +
Sbjct: 1 GSSGSSGVECPTCHKKFLSKYYLKVHNRKHTGEKPF--ECPKCGKCYFRKENLLEHEARN 58
Query: 96 AGETXXXXXXXXXXXXXQFYGLTLLRIHERLHAEKLYECDICKNRFPSSGAMKKHRRKHT 155
+E+++ C +C+ F ++ H HT
Sbjct: 59 CMN----------------------------RSEQVFTCSVCQETFRRRMELRLHMVSHT 90
Query: 156 GERPYECKEVCGRVFNRKDNLREHL-RAHAGET 187
GE PY+C C + F +K +L+ H+ + H+G +
Sbjct: 91 GEMPYKCSS-CSQQFMQKKDLQSHMIKLHSGPS 122
>pdb|1G2F|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
pdb|1G2F|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
Length = 90
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 50/86 (58%), Gaps = 6/86 (6%)
Query: 301 PYQCDI--CRKTFIRKEDLTRHCLLHTGVKPHKCPICTKGFTMKSSLKIHLLTHTKEPPK 358
PY C + C + F +K +L H +HTG KP +C IC + F+ ++SL H+ THT E P
Sbjct: 4 PYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKPF 63
Query: 359 SCEVCGRAFIRQDCLIR----HLRQK 380
+C++CGR F R HLRQK
Sbjct: 64 ACDICGRKFATLHTRTRHTKIHLRQK 89
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 43/78 (55%), Gaps = 5/78 (6%)
Query: 276 ELCNKTFNRKARLELHMKYIHEGADPYQCDICRKTFIRKEDLTRHCLLHTGVKPHKCPIC 335
E C++ F++K L+ H++ IH G P+QC IC + F ++ L H HTG KP C IC
Sbjct: 10 ESCDRRFSQKTNLDTHIR-IHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKPFACDIC 68
Query: 336 TKGF----TMKSSLKIHL 349
+ F T KIHL
Sbjct: 69 GRKFATLHTRTRHTKIHL 86
Score = 56.6 bits (135), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 39/71 (54%)
Query: 212 ERLHGLIERTCYARFAAKETLNRHMKTHSGVKPHVCEYCEKAFIQASQLKAHMFHHTGEN 271
ER + +C RF+ K L+ H++ H+G KP C C + F Q + L AH+ HTGE
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEK 61
Query: 272 GHTCELCNKTF 282
C++C + F
Sbjct: 62 PFACDICGRKF 72
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 42/99 (42%), Gaps = 29/99 (29%)
Query: 157 ERPYECK-EVCGRVFNRKDNLREHLRAHAGETXXXXXXXXXXXXXQFYGLTLLRIHERLH 215
ERPY C E C R F++K NL H+R H G+
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQC------------------------ 37
Query: 216 GLIERTCYARFAAKETLNRHMKTHSGVKPHVCEYCEKAF 254
R C F+ + +LN H++TH+G KP C+ C + F
Sbjct: 38 ----RICMRNFSQQASLNAHIRTHTGEKPFACDICGRKF 72
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 44/109 (40%), Gaps = 32/109 (29%)
Query: 75 IKVCGRVFNRKDNLREHLRAHAGETXXXXXXXXXXXXXQFYGLTLLRIHERLHAEKLYEC 134
++ C R F++K NL H+R H G+ K ++C
Sbjct: 9 VESCDRRFSQKTNLDTHIRIHTGQ-------------------------------KPFQC 37
Query: 135 DICKNRFPSSGAMKKHRRKHTGERPYECKEVCGRVFNRKDNLREHLRAH 183
IC F ++ H R HTGE+P+ C ++CGR F H + H
Sbjct: 38 RICMRNFSQQASLNAHIRTHTGEKPFAC-DICGRKFATLHTRTRHTKIH 85
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 36/60 (60%), Gaps = 3/60 (5%)
Query: 129 EKLYECDI--CKNRFPSSGAMKKHRRKHTGERPYECKEVCGRVFNRKDNLREHLRAHAGE 186
E+ Y C + C RF + H R HTG++P++C+ +C R F+++ +L H+R H GE
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCR-ICMRNFSQQASLNAHIRTHTGE 60
>pdb|1UBD|C Chain C, Co-Crystal Structure Of Human Yy1 Zinc Finger Domain Bound
To The Adeno-Associated Virus P5 Initiator Element
Length = 124
Score = 67.0 bits (162), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 43/113 (38%), Positives = 57/113 (50%), Gaps = 6/113 (5%)
Query: 220 RTCYARFAAKETLNRHMKTHSGVKPHVCEYCEKAFIQASQLKAHMFHHTGENGHTC--EL 277
+ C F + +H+ TH G + HVC C KAF+++S+LK H HTGE C E
Sbjct: 11 KGCTKMFRDNSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEG 69
Query: 278 CNKTFNRKARLELHMKYIHEGADPYQC--DICRKTFIRKEDLTRHCLLHTGVK 328
C K F+ L H++ IH G PY C D C K F + +L H L H K
Sbjct: 70 CGKRFSLDFNLRTHVR-IHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKAK 121
Score = 66.2 bits (160), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 40/109 (36%), Positives = 56/109 (51%), Gaps = 6/109 (5%)
Query: 250 CEKAFIQASQLKAHMFHHTGENGHTCELCNKTFNRKARLELHMKYIHEGADPYQCDI--C 307
C K F S ++ H+ H G H C C K F ++L+ H + +H G P+QC C
Sbjct: 13 CTKMFRDNSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRH-QLVHTGEKPFQCTFEGC 70
Query: 308 RKTFIRKEDLTRHCLLHTGVKPHKCPI--CTKGFTMKSSLKIHLLTHTK 354
K F +L H +HTG +P+ CP C K F ++LK H+LTH K
Sbjct: 71 GKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAK 119
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 114 FYGLTLLRIHERLHAEKLYECDICKNRFPSSGAMKKHRRKHTGERPYECK-EVCGRVFNR 172
F + +R H H +++ C C F S +K+H+ HTGE+P++C E CG+ F+
Sbjct: 17 FRDNSAMRKHLHTHGPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSL 76
Query: 173 KDNLREHLRAHAGE 186
NLR H+R H G+
Sbjct: 77 DFNLRTHVRIHTGD 90
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 50/104 (48%), Gaps = 6/104 (5%)
Query: 278 CNKTFNRKARLELHMKYIHEGADPYQCDICRKTFIRKEDLTRHCLLHTGVKPHKCPI--C 335
C K F + + H+ + H G + C C K F+ L RH L+HTG KP +C C
Sbjct: 13 CTKMFRDNSAMRKHL-HTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGC 70
Query: 336 TKGFTMKSSLKIHLLTHTKEPPKSCEV--CGRAFIRQDCLIRHL 377
K F++ +L+ H+ HT + P C C + F + L H+
Sbjct: 71 GKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHI 114
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 54/122 (44%), Gaps = 9/122 (7%)
Query: 67 EEKQICTYIKVCGRVFNRKDNLREHLRAHAGETXXXXXXXXXXXXXQFYGLTLLRIHERL 126
E + I K C ++F +R+HL H F + L+ H+ +
Sbjct: 2 EPRTIACPHKGCTKMFRDNSAMRKHLHTHGPRVHVCAECGKA-----FVESSKLKRHQLV 56
Query: 127 H-AEKLYECDI--CKNRFPSSGAMKKHRRKHTGERPYECK-EVCGRVFNRKDNLREHLRA 182
H EK ++C C RF ++ H R HTG+RPY C + C + F + NL+ H+
Sbjct: 57 HTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILT 116
Query: 183 HA 184
HA
Sbjct: 117 HA 118
Score = 30.0 bits (66), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 24/56 (42%)
Query: 43 HLCKGCYRIFTSQGYMLLSYKSKEEEKQICTYIKVCGRVFNRKDNLREHLRAHAGE 98
H+C C + F + EK + CG+ F+ NLR H+R H G+
Sbjct: 35 HVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGD 90
>pdb|2DMD|A Chain A, Solution Structure Of The N-Terminal C2h2 Type
Zinc-Binding Domain Of The Zinc Finger Protein 64,
Isoforms 1 And 2
Length = 96
Score = 65.1 bits (157), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 48/89 (53%), Gaps = 2/89 (2%)
Query: 268 TGENG-HTCELCNKTFNRKARLELHMKYIHEGADPYQCDICRKTFIRKEDLTRHCLLHTG 326
+G +G H CE+C K F+RK +L+ HM+ H G PY+C C L +H +H+
Sbjct: 3 SGSSGPHKCEVCGKCFSRKDKLKTHMR-CHTGVKPYKCKTCDYAAADSSSLNKHLRIHSD 61
Query: 327 VKPHKCPICTKGFTMKSSLKIHLLTHTKE 355
+P KC IC S L +HL +HT +
Sbjct: 62 ERPFKCQICPYASRNSSQLTVHLRSHTGD 90
Score = 63.5 bits (153), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 43/81 (53%)
Query: 299 ADPYQCDICRKTFIRKEDLTRHCLLHTGVKPHKCPICTKGFTMKSSLKIHLLTHTKEPPK 358
+ P++C++C K F RK+ L H HTGVKP+KC C SSL HL H+ E P
Sbjct: 6 SGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPF 65
Query: 359 SCEVCGRAFIRQDCLIRHLRQ 379
C++C A L HLR
Sbjct: 66 KCQICPYASRNSSQLTVHLRS 86
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 53/114 (46%), Gaps = 29/114 (25%)
Query: 159 PYECKEVCGRVFNRKDNLREHLRAHAGETXXXXXXXXXXXXXQFYGLTLLRIHERLHGLI 218
P++C EVCG+ F+RKD L+ H+R H G +
Sbjct: 8 PHKC-EVCGKCFSRKDKLKTHMRCHTG----------------------------VKPYK 38
Query: 219 ERTCYARFAAKETLNRHMKTHSGVKPHVCEYCEKAFIQASQLKAHMFHHTGENG 272
+TC A +LN+H++ HS +P C+ C A +SQL H+ HTG++G
Sbjct: 39 CKTCDYAAADSSSLNKHLRIHSDERPFKCQICPYASRNSSQLTVHLRSHTGDSG 92
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
Query: 244 PHVCEYCEKAFIQASQLKAHMFHHTGENGHTCELCNKTFNRKARLELHMKYIHEGADPYQ 303
PH CE C K F + +LK HM HTG + C+ C+ + L H++ IH P++
Sbjct: 8 PHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLR-IHSDERPFK 66
Query: 304 CDICRKTFIRKEDLTRHCLLHTG 326
C IC LT H HTG
Sbjct: 67 CQICPYASRNSSQLTVHLRSHTG 89
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 48/113 (42%), Gaps = 32/113 (28%)
Query: 75 IKVCGRVFNRKDNLREHLRAHAGETXXXXXXXXXXXXXQFYGLTLLRIHERLHAEKLYEC 134
+VCG+ F+RKD L+ H+R H G K Y+C
Sbjct: 11 CEVCGKCFSRKDKLKTHMRCHTGV-------------------------------KPYKC 39
Query: 135 DICKNRFPSSGAMKKHRRKHTGERPYECKEVCGRVFNRKDNLREHLRAHAGET 187
C S ++ KH R H+ ERP++C ++C L HLR+H G++
Sbjct: 40 KTCDYAAADSSSLNKHLRIHSDERPFKC-QICPYASRNSSQLTVHLRSHTGDS 91
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 40/72 (55%)
Query: 222 CYARFAAKETLNRHMKTHSGVKPHVCEYCEKAFIQASQLKAHMFHHTGENGHTCELCNKT 281
C F+ K+ L HM+ H+GVKP+ C+ C+ A +S L H+ H+ E C++C
Sbjct: 14 CGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQICPYA 73
Query: 282 FNRKARLELHMK 293
++L +H++
Sbjct: 74 SRNSSQLTVHLR 85
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 132 YECDICKNRFPSSGAMKKHRRKHTGERPYECKEVCGRVFNRKDNLREHLRAHAGE 186
++C++C F +K H R HTG +PY+CK C +L +HLR H+ E
Sbjct: 9 HKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCK-TCDYAAADSSSLNKHLRIHSDE 62
>pdb|1G2D|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE
#2)
pdb|1G2D|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE
#2)
Length = 90
Score = 63.5 bits (153), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 48/86 (55%), Gaps = 6/86 (6%)
Query: 301 PYQCDI--CRKTFIRKEDLTRHCLLHTGVKPHKCPICTKGFTMKSSLKIHLLTHTKEPPK 358
PY C + C + F +K +L H +HTG KP +C IC + F+ + L H+ THT E P
Sbjct: 4 PYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKPF 63
Query: 359 SCEVCGRAFIRQDCLIR----HLRQK 380
+C++CGR F R HLRQK
Sbjct: 64 ACDICGRKFATLHTRDRHTKIHLRQK 89
Score = 56.6 bits (135), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 43/78 (55%), Gaps = 5/78 (6%)
Query: 276 ELCNKTFNRKARLELHMKYIHEGADPYQCDICRKTFIRKEDLTRHCLLHTGVKPHKCPIC 335
E C++ F++K L+ H++ IH G P+QC IC + F + L +H HTG KP C IC
Sbjct: 10 ESCDRRFSQKTNLDTHIR-IHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKPFACDIC 68
Query: 336 TKGF----TMKSSLKIHL 349
+ F T KIHL
Sbjct: 69 GRKFATLHTRDRHTKIHL 86
Score = 53.5 bits (127), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 38/71 (53%)
Query: 212 ERLHGLIERTCYARFAAKETLNRHMKTHSGVKPHVCEYCEKAFIQASQLKAHMFHHTGEN 271
ER + +C RF+ K L+ H++ H+G KP C C + F Q + L H+ HTGE
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEK 61
Query: 272 GHTCELCNKTF 282
C++C + F
Sbjct: 62 PFACDICGRKF 72
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 41/99 (41%), Gaps = 29/99 (29%)
Query: 157 ERPYECK-EVCGRVFNRKDNLREHLRAHAGETXXXXXXXXXXXXXQFYGLTLLRIHERLH 215
ERPY C E C R F++K NL H+R H G+
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQC------------------------ 37
Query: 216 GLIERTCYARFAAKETLNRHMKTHSGVKPHVCEYCEKAF 254
R C F+ LN+H++TH+G KP C+ C + F
Sbjct: 38 ----RICMRNFSQHTGLNQHIRTHTGEKPFACDICGRKF 72
Score = 47.0 bits (110), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 35/60 (58%), Gaps = 3/60 (5%)
Query: 129 EKLYECDI--CKNRFPSSGAMKKHRRKHTGERPYECKEVCGRVFNRKDNLREHLRAHAGE 186
E+ Y C + C RF + H R HTG++P++C+ +C R F++ L +H+R H GE
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCR-ICMRNFSQHTGLNQHIRTHTGE 60
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 44/109 (40%), Gaps = 32/109 (29%)
Query: 75 IKVCGRVFNRKDNLREHLRAHAGETXXXXXXXXXXXXXQFYGLTLLRIHERLHAEKLYEC 134
++ C R F++K NL H+R H G+ K ++C
Sbjct: 9 VESCDRRFSQKTNLDTHIRIHTGQ-------------------------------KPFQC 37
Query: 135 DICKNRFPSSGAMKKHRRKHTGERPYECKEVCGRVFNRKDNLREHLRAH 183
IC F + +H R HTGE+P+ C ++CGR F H + H
Sbjct: 38 RICMRNFSQHTGLNQHIRTHTGEKPFAC-DICGRKFATLHTRDRHTKIH 85
>pdb|2CSH|A Chain A, Solution Structure Of Tandem Repeat Of The Zf-C2h2 Domains
Of Human Zinc Finger Protein 297b
Length = 110
Score = 62.8 bits (151), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 50/88 (56%), Gaps = 2/88 (2%)
Query: 268 TGENGHTCELCNKTFNRKARLELHMKYIHEGADPYQCDICRKTFIRKEDLTRHCLLHTGV 327
+G+ + C+ C K+F K++ + HM +H G PY C +C K F K L H +HTG+
Sbjct: 6 SGDKLYPCQ-CGKSFTHKSQRDRHMS-MHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGI 63
Query: 328 KPHKCPICTKGFTMKSSLKIHLLTHTKE 355
KP++C IC K F + S H+ + TK
Sbjct: 64 KPYECNICAKRFMWRDSFHRHVTSCTKS 91
Score = 59.3 bits (142), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 44/81 (54%), Gaps = 2/81 (2%)
Query: 240 SGVKPHVCEYCEKAFIQASQLKAHMFHHTGENGHTCELCNKTFNRKARLELHMKYIHEGA 299
SG K + C+ C K+F SQ HM H G + C +C K F K L HMK IH G
Sbjct: 6 SGDKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMK-IHTGI 63
Query: 300 DPYQCDICRKTFIRKEDLTRH 320
PY+C+IC K F+ ++ RH
Sbjct: 64 KPYECNICAKRFMWRDSFHRH 84
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Query: 297 EGADPYQCDICRKTFIRKEDLTRHCLLHTGVKPHKCPICTKGFTMKSSLKIHLLTHTKEP 356
G Y C C K+F K RH +H G++P+ C +C K F MK L H+ HT
Sbjct: 6 SGDKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIK 64
Query: 357 PKSCEVCGRAFIRQDCLIRHL 377
P C +C + F+ +D RH+
Sbjct: 65 PYECNICAKRFMWRDSFHRHV 85
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 32/71 (45%)
Query: 222 CYARFAAKETLNRHMKTHSGVKPHVCEYCEKAFIQASQLKAHMFHHTGENGHTCELCNKT 281
C F K +RHM H G++P+ C C K F L HM HTG + C +C K
Sbjct: 15 CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKR 74
Query: 282 FNRKARLELHM 292
F + H+
Sbjct: 75 FMWRDSFHRHV 85
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Query: 128 AEKLYECDICKNRFPSSGAMKKHRRKHTGERPYECKEVCGRVFNRKDNLREHLRAHAG 185
+KLY C C F +H H G RPY C VCG+ F K +L H++ H G
Sbjct: 7 GDKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGC-GVCGKKFKMKHHLVGHMKIHTG 62
Score = 37.0 bits (84), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 132 YECDICKNRFPSSGAMKKHRRKHTGERPYECKEVCGRVFNRKDNLREHLRA 182
Y C +C +F + H + HTG +PYEC +C + F +D+ H+ +
Sbjct: 38 YGCGVCGKKFKMKHHLVGHMKIHTGIKPYEC-NICAKRFMWRDSFHRHVTS 87
>pdb|1TF6|A Chain A, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain
Bound To The 5s Ribosomal Rna Gene Internal Control
Region
pdb|1TF6|D Chain D, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain
Bound To The 5s Ribosomal Rna Gene Internal Control
Region
Length = 190
Score = 62.4 bits (150), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 55/173 (31%), Positives = 74/173 (42%), Gaps = 15/173 (8%)
Query: 222 CYARFAAKETLNRHMKTHSGVKPHVC--EYCEKAFIQASQLKAHMFHHTGENGHTCEL-- 277
C A + L H+ H+G KP C E CEK F L H HTGE TC+
Sbjct: 20 CGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDG 79
Query: 278 CNKTFNRKARLELHMKYIHE-GADPYQCDI--CRKTFIRKEDLTRHCLLHTGVKPHKCP- 333
C+ F KA ++ H H Y C C K F + L H HT P++CP
Sbjct: 80 CDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPH 139
Query: 334 -ICTKGFTMKSSLKIHLLTHTKEPPK---SCEVCGRAFIRQDCLIRHLRQKHR 382
C K F++ S LK H H P K SC G+ + ++H+ + H+
Sbjct: 140 EGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTWTL---YLKHVAECHQ 189
Score = 53.1 bits (126), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 55/194 (28%), Positives = 80/194 (41%), Gaps = 38/194 (19%)
Query: 130 KLYECDI--CKNRFPSSGAMKKHRRKHTGERPYECKEV-CGRVFNRKDNLREHLRAHAGE 186
K Y C C + + ++ H KHTGE+P+ CKE C + F +L H H GE
Sbjct: 11 KRYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGE 70
Query: 187 TXXXXXXXXXXXXXQFYGLTLLRIHERLHGLIERTCYARFAAKETLNRHMKTHSGVK--P 244
C RF K + +H +K
Sbjct: 71 KNFTCD--------------------------SDGCDLRFTTKANMKKHFNRFHNIKICV 104
Query: 245 HVCEY--CEKAFIQASQLKAHMFHHTGENGHTC--ELCNKTFNRKARLELHMKYIHEGAD 300
+VC + C KAF + +QLK H F HT + + C E C+K F+ +RL+ H K +H G
Sbjct: 105 YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEK-VHAGYP 163
Query: 301 PYQCDICRKTFIRK 314
+ D C +F+ K
Sbjct: 164 CKKDDSC--SFVGK 175
Score = 37.4 bits (85), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 56/154 (36%), Gaps = 39/154 (25%)
Query: 68 EKQICTYIKVCGRVFNRKDNLREHLRAHAGETXXXXXXXXXXXXXQFYGLTLLRIHERLH 127
++ IC++ CG +N+ L+ HL H GE F L L H H
Sbjct: 11 KRYICSFAD-CGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKG--FTSLHHLTRHSLTH 67
Query: 128 -AEKLYECDI--CKNRFPSSGAMKKHRRK------------------------------- 153
EK + CD C RF + MKKH +
Sbjct: 68 TGEKNFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQF 127
Query: 154 -HTGERPYECK-EVCGRVFNRKDNLREHLRAHAG 185
HT + PYEC E C + F+ L+ H + HAG
Sbjct: 128 SHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG 161
>pdb|2YT9|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 345 In
Zinc Finger Protein 278
Length = 95
Score = 60.8 bits (146), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 44/87 (50%), Gaps = 2/87 (2%)
Query: 297 EGADPYQCDICRKTFIRKEDLTRHCLLHTGVKPHKCPICTKGFTMKSSLKIHLLTHTKE- 355
G+ C+IC K F L RH L H+G KP+ CP+C F K + H+ +H
Sbjct: 3 SGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSV 62
Query: 356 -PPKSCEVCGRAFIRQDCLIRHLRQKH 381
P C+ CG+ F R D L H++Q H
Sbjct: 63 GKPYICQSCGKGFSRPDHLNGHIKQVH 89
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 40/83 (48%), Gaps = 3/83 (3%)
Query: 240 SGVKPHVCEYCEKAFIQASQLKAHMFHHTGENGHTCELCNKTFNRKARLELHMKYIHEGA 299
SG CE C K F L H H+GE ++C +C F RK R+ H++ H+G+
Sbjct: 3 SGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVR-SHDGS 61
Query: 300 --DPYQCDICRKTFIRKEDLTRH 320
PY C C K F R + L H
Sbjct: 62 VGKPYICQSCGKGFSRPDHLNGH 84
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 41/85 (48%), Gaps = 2/85 (2%)
Query: 216 GLIERTCYARFAAKETLNRHMKTHSGVKPHVCEYCEKAFIQASQLKAHMFHHTGENG--H 273
G+ C F LNRH +HSG KP+ C C F + ++ H+ H G G +
Sbjct: 7 GVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPY 66
Query: 274 TCELCNKTFNRKARLELHMKYIHEG 298
C+ C K F+R L H+K +H G
Sbjct: 67 ICQSCGKGFSRPDHLNGHIKQVHSG 91
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 134 CDICKNRFPSSGAMKKHRRKHTGERPYECKEVCGRVFNRKDNLREHLRAHAGET 187
C+IC F + +H+ H+GE+PY C VCG F RKD + H+R+H G
Sbjct: 10 CEICGKIFRDVYHLNRHKLSHSGEKPYSC-PVCGLRFKRKDRMSYHVRSHDGSV 62
Score = 43.1 bits (100), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 34/63 (53%), Gaps = 4/63 (6%)
Query: 128 AEKLYECDICKNRFPSSGAMKKHRRKHTGE--RPYECKEVCGRVFNRKDNLREHLR-AHA 184
EK Y C +C RF M H R H G +PY C+ CG+ F+R D+L H++ H+
Sbjct: 32 GEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQS-CGKGFSRPDHLNGHIKQVHS 90
Query: 185 GET 187
G +
Sbjct: 91 GPS 93
Score = 38.1 bits (87), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 41/103 (39%), Gaps = 30/103 (29%)
Query: 164 EVCGRVFNRKDNLREHLRAHAGETXXXXXXXXXXXXXQFYGLTLLRIHERLHGLIERTCY 223
E+CG++F +L H +H+GE C
Sbjct: 11 EICGKIFRDVYHLNRHKLSHSGEKPYSCP----------------------------VCG 42
Query: 224 ARFAAKETLNRHMKTHSGV--KPHVCEYCEKAFIQASQLKAHM 264
RF K+ ++ H+++H G KP++C+ C K F + L H+
Sbjct: 43 LRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGFSRPDHLNGHI 85
>pdb|2WBU|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound
To Its Target Dna
Length = 90
Score = 59.7 bits (143), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 46/84 (54%), Gaps = 5/84 (5%)
Query: 273 HTCEL--CNKTFNRKARLELHMKYIHEGADPYQCDI--CRKTFIRKEDLTRHCLLHTGVK 328
HTC+ C KT+ + + L+ H++ H G PY CD C F R ++LTRH HTG +
Sbjct: 7 HTCDYAGCGKTYTKSSHLKAHLR-THTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHR 65
Query: 329 PHKCPICTKGFTMKSSLKIHLLTH 352
P +C C + F+ L +H+ H
Sbjct: 66 PFQCQKCDRAFSRSDHLALHMKRH 89
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 51/116 (43%), Gaps = 35/116 (30%)
Query: 70 QICTYIKVCGRVFNRKDNLREHLRAHAGETXXXXXXXXXXXXXQFYGLTLLRIHERLHAE 129
C Y CG+ + + +L+ HLR H GE
Sbjct: 7 HTCDYAG-CGKTYTKSSHLKAHLRTHTGE------------------------------- 34
Query: 130 KLYECDI--CKNRFPSSGAMKKHRRKHTGERPYECKEVCGRVFNRKDNLREHLRAH 183
K Y CD C +F S + +H RKHTG RP++C++ C R F+R D+L H++ H
Sbjct: 35 KPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQK-CDRAFSRSDHLALHMKRH 89
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 39/74 (52%), Gaps = 2/74 (2%)
Query: 222 CYARFAAKETLNRHMKTHSGVKPHVCEY--CEKAFIQASQLKAHMFHHTGENGHTCELCN 279
C + L H++TH+G KP+ C++ C F ++ +L H HTG C+ C+
Sbjct: 14 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCD 73
Query: 280 KTFNRKARLELHMK 293
+ F+R L LHMK
Sbjct: 74 RAFSRSDHLALHMK 87
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 37/82 (45%), Gaps = 4/82 (4%)
Query: 302 YQCDI--CRKTFIRKEDLTRHCLLHTGVKPHKCPI--CTKGFTMKSSLKIHLLTHTKEPP 357
+ CD C KT+ + L H HTG KP+ C C F L H HT P
Sbjct: 7 HTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRP 66
Query: 358 KSCEVCGRAFIRQDCLIRHLRQ 379
C+ C RAF R D L H+++
Sbjct: 67 FQCQKCDRAFSRSDHLALHMKR 88
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Query: 132 YECDI--CKNRFPSSGAMKKHRRKHTGERPYECK-EVCGRVFNRKDNLREHLRAHAG 185
+ CD C + S +K H R HTGE+PY C + CG F R D L H R H G
Sbjct: 7 HTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTG 63
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 43/102 (42%), Gaps = 26/102 (25%)
Query: 166 CGRVFNRKDNLREHLRAHAGETXXXXXXXXXXXXXQFYGLTLLRIHERLHGLIERTCYAR 225
CG+ + + +L+ HLR H GE H G C +
Sbjct: 14 CGKTYTKSSHLKAHLRTHTGEKP---------------------YHCDWDG-----CGWK 47
Query: 226 FAAKETLNRHMKTHSGVKPHVCEYCEKAFIQASQLKAHMFHH 267
FA + L RH + H+G +P C+ C++AF ++ L HM H
Sbjct: 48 FARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLALHMKRH 89
>pdb|2WBS|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound
To Its Target Dna
Length = 89
Score = 59.3 bits (142), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 46/84 (54%), Gaps = 5/84 (5%)
Query: 273 HTCEL--CNKTFNRKARLELHMKYIHEGADPYQCDI--CRKTFIRKEDLTRHCLLHTGVK 328
HTC+ C KT+ + + L+ H++ H G PY CD C F R ++LTRH HTG +
Sbjct: 6 HTCDYAGCGKTYTKSSHLKAHLR-THTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHR 64
Query: 329 PHKCPICTKGFTMKSSLKIHLLTH 352
P +C C + F+ L +H+ H
Sbjct: 65 PFQCQKCDRAFSRSDHLALHMKRH 88
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 52/121 (42%), Gaps = 35/121 (28%)
Query: 65 KEEEKQICTYIKVCGRVFNRKDNLREHLRAHAGETXXXXXXXXXXXXXQFYGLTLLRIHE 124
K C Y CG+ + + +L+ HLR H GE
Sbjct: 1 KRTATHTCDYAG-CGKTYTKSSHLKAHLRTHTGE-------------------------- 33
Query: 125 RLHAEKLYECDI--CKNRFPSSGAMKKHRRKHTGERPYECKEVCGRVFNRKDNLREHLRA 182
K Y CD C +F S + +H RKHTG RP++C++ C R F+R D+L H++
Sbjct: 34 -----KPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQK-CDRAFSRSDHLALHMKR 87
Query: 183 H 183
H
Sbjct: 88 H 88
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 39/74 (52%), Gaps = 2/74 (2%)
Query: 222 CYARFAAKETLNRHMKTHSGVKPHVCEY--CEKAFIQASQLKAHMFHHTGENGHTCELCN 279
C + L H++TH+G KP+ C++ C F ++ +L H HTG C+ C+
Sbjct: 13 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCD 72
Query: 280 KTFNRKARLELHMK 293
+ F+R L LHMK
Sbjct: 73 RAFSRSDHLALHMK 86
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 37/82 (45%), Gaps = 4/82 (4%)
Query: 302 YQCDI--CRKTFIRKEDLTRHCLLHTGVKPHKCPI--CTKGFTMKSSLKIHLLTHTKEPP 357
+ CD C KT+ + L H HTG KP+ C C F L H HT P
Sbjct: 6 HTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRP 65
Query: 358 KSCEVCGRAFIRQDCLIRHLRQ 379
C+ C RAF R D L H+++
Sbjct: 66 FQCQKCDRAFSRSDHLALHMKR 87
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Query: 132 YECDI--CKNRFPSSGAMKKHRRKHTGERPYECK-EVCGRVFNRKDNLREHLRAHAG 185
+ CD C + S +K H R HTGE+PY C + CG F R D L H R H G
Sbjct: 6 HTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTG 62
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 43/102 (42%), Gaps = 26/102 (25%)
Query: 166 CGRVFNRKDNLREHLRAHAGETXXXXXXXXXXXXXQFYGLTLLRIHERLHGLIERTCYAR 225
CG+ + + +L+ HLR H GE H G C +
Sbjct: 13 CGKTYTKSSHLKAHLRTHTGEKP---------------------YHCDWDG-----CGWK 46
Query: 226 FAAKETLNRHMKTHSGVKPHVCEYCEKAFIQASQLKAHMFHH 267
FA + L RH + H+G +P C+ C++AF ++ L HM H
Sbjct: 47 FARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLALHMKRH 88
>pdb|2LCE|A Chain A, Chemical Shift Assignment Of Hr4436b From Homo Sapiens,
Northeast Structural Genomics Consortium
Length = 74
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 129 EKLYECDICKNRFPSSGAMKKHRRKHTGERPYECKEVCGRVFNRKDNLREHLRAHAGE 186
+K Y+CD C+ F G + H+ HTGE+PY C +CG FNR NL+ H R H+GE
Sbjct: 15 DKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRC-NICGAQFNRPANLKTHTRIHSGE 71
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 34/57 (59%)
Query: 301 PYQCDICRKTFIRKEDLTRHCLLHTGVKPHKCPICTKGFTMKSSLKIHLLTHTKEPP 357
PY+CD C+ +F K +L H +HTG KP++C IC F ++LK H H+ E P
Sbjct: 17 PYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKP 73
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 243 KPHVCEYCEKAFIQASQLKAHMFHHTGENGHTCELCNKTFNRKARLELHMKYIHEGADP 301
KP+ C+ C+ +F L +H HTGE + C +C FNR A L+ H + IH G P
Sbjct: 16 KPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTR-IHSGEKP 73
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 24/51 (47%)
Query: 328 KPHKCPICTKGFTMKSSLKIHLLTHTKEPPKSCEVCGRAFIRQDCLIRHLR 378
KP+KC C F K +L H HT E P C +CG F R L H R
Sbjct: 16 KPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTR 66
Score = 38.1 bits (87), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 24/49 (48%)
Query: 222 CYARFAAKETLNRHMKTHSGVKPHVCEYCEKAFIQASQLKAHMFHHTGE 270
C A F K L H H+G KP+ C C F + + LK H H+GE
Sbjct: 23 CQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGE 71
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 120 LRIHERLH-AEKLYECDICKNRFPSSGAMKKHRRKHTGERP 159
L H+ +H EK Y C+IC +F +K H R H+GE+P
Sbjct: 33 LASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKP 73
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 15/22 (68%)
Query: 77 VCGRVFNRKDNLREHLRAHAGE 98
+CG FNR NL+ H R H+GE
Sbjct: 50 ICGAQFNRPANLKTHTRIHSGE 71
>pdb|2EBT|A Chain A, Solution Structure Of Three Tandem Repeats Of Zf-C2h2
Domains From Human Kruppel-Like Factor 5
Length = 100
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 46/84 (54%), Gaps = 5/84 (5%)
Query: 273 HTCEL--CNKTFNRKARLELHMKYIHEGADPYQC--DICRKTFIRKEDLTRHCLLHTGVK 328
H C+ C K + + + L+ H++ H G PY+C + C F R ++LTRH HTG K
Sbjct: 16 HYCDYPGCTKVYTKSSHLKAHLR-THTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAK 74
Query: 329 PHKCPICTKGFTMKSSLKIHLLTH 352
P +C +C + F+ L +H+ H
Sbjct: 75 PFQCGVCNRSFSRSDHLALHMKRH 98
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 43/83 (51%), Gaps = 2/83 (2%)
Query: 213 RLHGLIERTCYARFAAKETLNRHMKTHSGVKPHVCEY--CEKAFIQASQLKAHMFHHTGE 270
R+H C + L H++TH+G KP+ C + C+ F ++ +L H HTG
Sbjct: 14 RIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGA 73
Query: 271 NGHTCELCNKTFNRKARLELHMK 293
C +CN++F+R L LHMK
Sbjct: 74 KPFQCGVCNRSFSRSDHLALHMK 96
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 49/108 (45%), Gaps = 34/108 (31%)
Query: 78 CGRVFNRKDNLREHLRAHAGETXXXXXXXXXXXXXQFYGLTLLRIHERLHAEKLYEC--D 135
C +V+ + +L+ HLR H GE K Y+C +
Sbjct: 23 CTKVYTKSSHLKAHLRTHTGE-------------------------------KPYKCTWE 51
Query: 136 ICKNRFPSSGAMKKHRRKHTGERPYECKEVCGRVFNRKDNLREHLRAH 183
C RF S + +H RKHTG +P++C VC R F+R D+L H++ H
Sbjct: 52 GCDWRFARSDELTRHYRKHTGAKPFQCG-VCNRSFSRSDHLALHMKRH 98
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 36/80 (45%), Gaps = 4/80 (5%)
Query: 304 CDI--CRKTFIRKEDLTRHCLLHTGVKPHKCPI--CTKGFTMKSSLKIHLLTHTKEPPKS 359
CD C K + + L H HTG KP+KC C F L H HT P
Sbjct: 18 CDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQ 77
Query: 360 CEVCGRAFIRQDCLIRHLRQ 379
C VC R+F R D L H+++
Sbjct: 78 CGVCNRSFSRSDHLALHMKR 97
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 50/125 (40%), Gaps = 31/125 (24%)
Query: 143 SSGAMKKHRRKHTGERPYECKEVCGRVFNRKDNLREHLRAHAGETXXXXXXXXXXXXXQF 202
SSG + RR H + P C +V+ + +L+ HLR H GE
Sbjct: 5 SSGPDLEKRRIHYCDYP-----GCTKVYTKSSHLKAHLRTHTGE---------------- 43
Query: 203 YGLTLLRIHERLHGLIERTCYARFAAKETLNRHMKTHSGVKPHVCEYCEKAFIQASQLKA 262
+ + C RFA + L RH + H+G KP C C ++F ++ L
Sbjct: 44 ----------KPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLAL 93
Query: 263 HMFHH 267
HM H
Sbjct: 94 HMKRH 98
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
Query: 126 LHAEKLYECDI--CKNRFPSSGAMKKHRRKHTGERPYECK-EVCGRVFNRKDNLREHLRA 182
L +++ CD C + S +K H R HTGE+PY+C E C F R D L H R
Sbjct: 10 LEKRRIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRK 69
Query: 183 HAG 185
H G
Sbjct: 70 HTG 72
>pdb|2GLI|A Chain A, Five-Finger GliDNA COMPLEX
Length = 155
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 56/130 (43%), Gaps = 30/130 (23%)
Query: 226 FAAKETLNRHMKTHSGVKPHVC--EYCEKAFIQASQLKAHMFHHTGENGHTCEL--CNKT 281
F A+ L HM+ H+G KPH C E C K++ + LK H+ HTGE + CE C+K
Sbjct: 49 FKAQYMLVVHMRRHTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKA 108
Query: 282 FNRKARLELHMKYIHEGADPYQCDICRKTFIRKEDLTRHCLLHTGVKPHKCPICTKGFTM 341
F+ + H H PY C + P CTK +T
Sbjct: 109 FSNASDRAKHQNRTHSNEKPYVCKL--------------------------PGCTKRYTD 142
Query: 342 KSSLKIHLLT 351
SSL+ H+ T
Sbjct: 143 PSSLRKHVKT 152
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 55/109 (50%), Gaps = 8/109 (7%)
Query: 280 KTFNRKARLELHMKYIHEGADPYQCDI--CRKTFIRKEDLTRHCLLHTGVKPHKC--PIC 335
+ F + L +HM+ H G P++C CRK++ R E+L H HTG KP+ C C
Sbjct: 47 RPFKAQYMLVVHMRR-HTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGC 105
Query: 336 TKGFTMKSSLKIHL-LTHTKEPPKSCEV--CGRAFIRQDCLIRHLRQKH 381
+K F+ S H TH+ E P C++ C + + L +H++ H
Sbjct: 106 SKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKTVH 154
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 52/103 (50%), Gaps = 7/103 (6%)
Query: 201 QFYGLTLLRIH--ERLHGLIERTCYARFAAKETLNRHMKTHSGVKPHVCEY--CEKAFIQ 256
Q+ + +R H E+ H C ++ E L H+++H+G KP++CE+ C KAF
Sbjct: 52 QYMLVVHMRRHTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSN 111
Query: 257 ASQLKAHMFH-HTGENGHTCEL--CNKTFNRKARLELHMKYIH 296
AS H H+ E + C+L C K + + L H+K +H
Sbjct: 112 ASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKTVH 154
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 39/78 (50%), Gaps = 5/78 (6%)
Query: 114 FYGLTLLRIHERLH-AEKLYECDI--CKNRFPSSGAMKKHRRKHTGERPYECK-EVCGRV 169
F +L +H R H EK ++C C+ + +K H R HTGE+PY C+ E C +
Sbjct: 49 FKAQYMLVVHMRRHTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKA 108
Query: 170 F-NRKDNLREHLRAHAGE 186
F N D + R H+ E
Sbjct: 109 FSNASDRAKHQNRTHSNE 126
Score = 37.7 bits (86), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 62/139 (44%), Gaps = 39/139 (28%)
Query: 50 RIFTSQGYMLLSYKSKE--EEKQICTYIKVCGRVFNRKDNLREHLRAHAGETXXXXXXXX 107
R F +Q YML+ + + E+ CT+ + C + ++R +NL+ HLR+H GE
Sbjct: 47 RPFKAQ-YMLVVHMRRHTGEKPHKCTF-EGCRKSYSRLENLKTHLRSHTGE--------- 95
Query: 108 XXXXXQFYGLTLLRIHERLHAEKLYECDI--CKNRFPSSGAMKKHR-RKHTGERPYECK- 163
K Y C+ C F ++ KH+ R H+ E+PY CK
Sbjct: 96 ----------------------KPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKL 133
Query: 164 EVCGRVFNRKDNLREHLRA 182
C + + +LR+H++
Sbjct: 134 PGCTKRYTDPSSLRKHVKT 152
>pdb|2EE8|A Chain A, Solution Structure Of Three Zf-C2h2 Domains From Mouse
Protein Odd-Skipped-Related 2 Splicing Isoform 2
Length = 106
Score = 56.6 bits (135), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Query: 275 CELCNKTFNRKARLELHMKYIHEGADPYQCDICRKTFIRKEDLTRHCLLHTGVKPHKCPI 334
C+ C + F + L +H + H PY CDIC K F R++ L H +H+ KP KC
Sbjct: 20 CKFCGRHFTKSYNLLIHER-THTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQE 78
Query: 335 CTKGFTMKSSLKIHLLTH 352
C KGF +L +H H
Sbjct: 79 CGKGFCQSRTLAVHKTLH 96
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 44/82 (53%), Gaps = 1/82 (1%)
Query: 243 KPHVCEYCEKAFIQASQLKAHMFHHTGENGHTCELCNKTFNRKARLELHMKYIHEGADPY 302
K +C++C + F ++ L H HT E +TC++C+K F R+ L H +YIH P+
Sbjct: 16 KEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDH-RYIHSKEKPF 74
Query: 303 QCDICRKTFIRKEDLTRHCLLH 324
+C C K F + L H LH
Sbjct: 75 KCQECGKGFCQSRTLAVHKTLH 96
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 37/75 (49%)
Query: 302 YQCDICRKTFIRKEDLTRHCLLHTGVKPHKCPICTKGFTMKSSLKIHLLTHTKEPPKSCE 361
+ C C + F + +L H HT +P+ C IC K F + L+ H H+KE P C+
Sbjct: 18 FICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQ 77
Query: 362 VCGRAFIRQDCLIRH 376
CG+ F + L H
Sbjct: 78 ECGKGFCQSRTLAVH 92
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 128 AEKLYECDICKNRFPSSGAMKKHRRKHTGERPYECKEVCGRVFNRKDNLREHLRAHAGE 186
+K + C C F S + H R HT ERPY C ++C + F R+D+LR+H H+ E
Sbjct: 14 TKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTC-DICHKAFRRQDHLRDHRYIHSKE 71
Score = 45.8 bits (107), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
Query: 120 LRIHERLHA-EKLYECDICKNRFPSSGAMKKHRRKHTGERPYECKEVCGRVFNRKDNLRE 178
L IHER H E+ Y CDIC F ++ HR H+ E+P++C+E CG+ F + L
Sbjct: 33 LLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQE-CGKGFCQSRTLAV 91
Query: 179 HLRAH 183
H H
Sbjct: 92 HKTLH 96
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 39/85 (45%)
Query: 217 LIERTCYARFAAKETLNRHMKTHSGVKPHVCEYCEKAFIQASQLKAHMFHHTGENGHTCE 276
I + C F L H +TH+ +P+ C+ C KAF + L+ H + H+ E C+
Sbjct: 18 FICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQ 77
Query: 277 LCNKTFNRKARLELHMKYIHEGADP 301
C K F + L +H + + P
Sbjct: 78 ECGKGFCQSRTLAVHKTLHMQTSSP 102
Score = 33.5 bits (75), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Query: 35 VGEKTVPGHLCKGCYRIFTSQGYMLLSYKSKEEEKQICTYIKVCGRVFNRKDNLREHLRA 94
+ KT +CK C R FT +L+ ++ +E+ +C + F R+D+LR+H
Sbjct: 10 LPSKTKKEFICKFCGRHFTKSYNLLIHERTHTDERPY--TCDICHKAFRRQDHLRDHRYI 67
Query: 95 HAGE 98
H+ E
Sbjct: 68 HSKE 71
>pdb|2LT7|A Chain A, Solution Nmr Structure Of Kaiso Zinc Finger Dna Binding
Domain In Complex With Kaiso Binding Site Dna
pdb|4F6M|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding Domain
In Complex With Kaiso Binding Site Dna
pdb|4F6N|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding Protein
In Complex With Methylated Cpg Site Dna
Length = 133
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 44/100 (44%), Gaps = 7/100 (7%)
Query: 221 TCYARFAAKETLNRHMKTHSGVKPHVCEYCEKAFIQASQLKAHMFHHTGENGHTCELCNK 280
C + +L RH HS K + C YCEK F A H HHTGE + C C K
Sbjct: 27 VCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQCLACGK 86
Query: 281 TFNRKARLELHMKYIHEGADP------YQCDICRKTFIRK 314
+F + H+K +H DP Y+ CR IR+
Sbjct: 87 SFINYQFMSSHIKSVH-SQDPSGDSKLYRLHPCRSLQIRQ 125
Score = 49.3 bits (116), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 47/97 (48%)
Query: 285 KARLELHMKYIHEGADPYQCDICRKTFIRKEDLTRHCLLHTGVKPHKCPICTKGFTMKSS 344
K + + H + I +G Y C +C+++++ L RH +H+ K + C C K F +
Sbjct: 6 KVKHDDHYELIVDGRVYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEY 65
Query: 345 LKIHLLTHTKEPPKSCEVCGRAFIRQDCLIRHLRQKH 381
H + HT E C CG++FI + H++ H
Sbjct: 66 RTKHEIHHTGERRYQCLACGKSFINYQFMSSHIKSVH 102
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 36/67 (53%), Gaps = 2/67 (2%)
Query: 117 LTLLRIHERLHA-EKLYECDICKNRFPSSGAMKKHRRKHTGERPYECKEVCGRVFNRKDN 175
LT LR H +H+ EK Y C C+ FP + KH HTGER Y+C CG+ F
Sbjct: 35 LTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQCL-ACGKSFINYQF 93
Query: 176 LREHLRA 182
+ H+++
Sbjct: 94 MSSHIKS 100
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 40/79 (50%), Gaps = 7/79 (8%)
Query: 245 HVCEYCEKAFIQASQLKAHMFHHTGENGHTCELCNKTF---NRKARLELHMKYIHEGADP 301
++C C+++++ + L+ H H+ E + C C K F + + E+H H G
Sbjct: 23 YICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIH----HTGERR 78
Query: 302 YQCDICRKTFIRKEDLTRH 320
YQC C K+FI + ++ H
Sbjct: 79 YQCLACGKSFINYQFMSSH 97
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 41/89 (46%), Gaps = 2/89 (2%)
Query: 269 GENGHTCELCNKTFNRKARLELHMKYIHEGADPYQCDICRKTFIRKEDLTRHCLLHTGVK 328
G + C +C +++ L H IH Y C C K F E T+H + HTG +
Sbjct: 19 GRVYYICIVCKRSYVCLTSLRRHFN-IHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGER 77
Query: 329 PHKCPICTKGFTMKSSLKIHLLT-HTKEP 356
++C C K F + H+ + H+++P
Sbjct: 78 RYQCLACGKSFINYQFMSSHIKSVHSQDP 106
Score = 31.2 bits (69), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 132 YECDICKNRFPSSGAMKKHRRKHTGERPYECKEVCGRVFNRKDNLREHLRAHAGE 186
Y C +CK + ++++H H+ E+ Y C+ C +VF + +H H GE
Sbjct: 23 YICIVCKRSYVCLTSLRRHFNIHSWEKKYPCR-YCEKVFPLAEYRTKHEIHHTGE 76
>pdb|2ADR|A Chain A, Adr1 Dna-Binding Domain From Saccharomyces Cerevisiae,
Nmr, 25 Structures
Length = 60
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 34/56 (60%)
Query: 332 CPICTKGFTMKSSLKIHLLTHTKEPPKSCEVCGRAFIRQDCLIRHLRQKHRSHLDE 387
C +CT+ F + LK H +HT E P C +C RAF R+D LIRH ++ H +L E
Sbjct: 5 CEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSGNLGE 60
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 29/53 (54%)
Query: 246 VCEYCEKAFIQASQLKAHMFHHTGENGHTCELCNKTFNRKARLELHMKYIHEG 298
VCE C +AF + LK H HT E + C LCN+ F R+ L H + IH G
Sbjct: 4 VCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Query: 132 YECDICKNRFPSSGAMKKHRRKHTGERPYECKEVCGRVFNRKDNLREHL-RAHAG 185
+ C++C F +K+H R HT E+PY C +C R F R+D L H + H+G
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCG-LCNRAFTRRDLLIRHAQKIHSG 56
Score = 42.7 bits (99), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 27/47 (57%)
Query: 302 YQCDICRKTFIRKEDLTRHCLLHTGVKPHKCPICTKGFTMKSSLKIH 348
+ C++C + F R+E L RH HT KP+ C +C + FT + L H
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRH 49
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 274 TCELCNKTFNRKARLELHMKYIHEGADPYQCDICRKTFIRKEDLTRHCL-LHTG 326
CE+C + F R+ L+ H + H PY C +C + F R++ L RH +H+G
Sbjct: 4 VCEVCTRAFARQEHLKRHYRS-HTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56
Score = 34.7 bits (78), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 23/43 (53%)
Query: 221 TCYARFAAKETLNRHMKTHSGVKPHVCEYCEKAFIQASQLKAH 263
C FA +E L RH ++H+ KP+ C C +AF + L H
Sbjct: 7 VCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRH 49
>pdb|2COT|A Chain A, Solution Structure Of The First And Second Zf-C2h2 Domain
Of Zinc Finger Protein 435
Length = 77
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 35/56 (62%), Gaps = 1/56 (1%)
Query: 130 KLYECDICKNRFPSSGAMKKHRRKHTGERPYECKEVCGRVFNRKDNLREHLRAHAG 185
+ Y+CD C F S + KHRR HTGE+PY+C E CG+ F ++ +L H R H G
Sbjct: 17 RRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDE-CGKAFIQRSHLIGHHRVHTG 71
Score = 53.1 bits (126), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 32/58 (55%)
Query: 302 YQCDICRKTFIRKEDLTRHCLLHTGVKPHKCPICTKGFTMKSSLKIHLLTHTKEPPKS 359
Y+CD C K+F DL++H HTG KP+KC C K F +S L H HT P S
Sbjct: 19 YKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGPSS 76
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 29/49 (59%)
Query: 330 HKCPICTKGFTMKSSLKIHLLTHTKEPPKSCEVCGRAFIRQDCLIRHLR 378
+KC C K F+ S L H THT E P C+ CG+AFI++ LI H R
Sbjct: 19 YKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHR 67
Score = 47.0 bits (110), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 275 CELCNKTFNRKARLELHMKYIHEGADPYQCDICRKTFIRKEDLTRHCLLHTGVKP 329
C+ C K+F+ + L H + H G PY+CD C K FI++ L H +HTG P
Sbjct: 21 CDECGKSFSHSSDLSKHRR-THTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGP 74
Score = 45.8 bits (107), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 29/48 (60%)
Query: 222 CYARFAAKETLNRHMKTHSGVKPHVCEYCEKAFIQASQLKAHMFHHTG 269
C F+ L++H +TH+G KP+ C+ C KAFIQ S L H HTG
Sbjct: 24 CGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTG 71
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 247 CEYCEKAFIQASQLKAHMFHHTGENGHTCELCNKTFNRKARLELHMKYIHEGADP 301
C+ C K+F +S L H HTGE + C+ C K F +++ L H + +H G+ P
Sbjct: 21 CDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHR-VHTGSGP 74
>pdb|1F2I|G Chain G, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|H Chain H, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|I Chain I, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|J Chain J, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|K Chain K, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|L Chain L, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
Length = 73
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 36/64 (56%), Gaps = 2/64 (3%)
Query: 292 MKYIHEGADPYQCDI--CRKTFIRKEDLTRHCLLHTGVKPHKCPICTKGFTMKSSLKIHL 349
+ Y+ PY C + C + F R ++LTRH +HTG KP +C IC + F+ L H+
Sbjct: 10 LNYVVPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHI 69
Query: 350 LTHT 353
THT
Sbjct: 70 RTHT 73
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 35/57 (61%), Gaps = 3/57 (5%)
Query: 130 KLYECDI--CKNRFPSSGAMKKHRRKHTGERPYECKEVCGRVFNRKDNLREHLRAHA 184
+ Y C + C RF S + +H R HTG++P++C+ +C R F+R D+L H+R H
Sbjct: 18 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCR-ICMRNFSRSDHLTTHIRTHT 73
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Query: 327 VKPHKCPI--CTKGFTMKSSLKIHLLTHTKEPPKSCEVCGRAFIRQDCLIRHLR 378
++P+ CP+ C + F+ L H+ HT + P C +C R F R D L H+R
Sbjct: 17 MRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR 70
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 27/48 (56%)
Query: 221 TCYARFAAKETLNRHMKTHSGVKPHVCEYCEKAFIQASQLKAHMFHHT 268
+C RF+ + L RH++ H+G KP C C + F ++ L H+ HT
Sbjct: 26 SCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT 73
Score = 38.1 bits (87), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
Query: 242 VKPHVC--EYCEKAFIQASQLKAHMFHHTGENGHTCELCNKTFNRKARLELHMK 293
++P+ C E C++ F ++ +L H+ HTG+ C +C + F+R L H++
Sbjct: 17 MRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR 70
Score = 33.9 bits (76), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Query: 158 RPYECK-EVCGRVFNRKDNLREHLRAHAGE 186
RPY C E C R F+R D L H+R H G+
Sbjct: 18 RPYACPVESCDRRFSRSDELTRHIRIHTGQ 47
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 34/97 (35%), Gaps = 32/97 (32%)
Query: 59 LLSYKSKEEEKQICTYIKVCGRVFNRKDNLREHLRAHAGETXXXXXXXXXXXXXQFYGLT 118
LL+Y + C ++ C R F+R D L H+R H G
Sbjct: 9 LLNYVVPKMRPYACP-VESCDRRFSRSDELTRHIRIHTG--------------------- 46
Query: 119 LLRIHERLHAEKLYECDICKNRFPSSGAMKKHRRKHT 155
+K ++C IC F S + H R HT
Sbjct: 47 ----------QKPFQCRICMRNFSRSDHLTTHIRTHT 73
>pdb|2RPC|A Chain A, Solution Structure Of The Tandem Zf-C2h2 Domains From The
Human Zinc Finger Protein Zic 3
Length = 155
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 48/112 (42%), Gaps = 12/112 (10%)
Query: 278 CNKTFNRKARLELHMKYIHEGADPYQCDICR--------KTFIRKEDLTRHCLLHTGVKP 329
C++TF+ L H+ H G +C K+F K L H +HTG KP
Sbjct: 31 CDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKP 90
Query: 330 HKCPI--CTKGFTMKSSLKIHLLTHTKEPPKSCEV--CGRAFIRQDCLIRHL 377
CP C K F +LKIH THT E P CE C R F +H+
Sbjct: 91 FPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHM 142
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 36/71 (50%), Gaps = 4/71 (5%)
Query: 226 FAAKETLNRHMKTHSGVKPHVCEY--CEKAFIQASQLKAHMFHHTGENGHTCEL--CNKT 281
F AK L H++ H+G KP C + C K F ++ LK H HTGE CE C++
Sbjct: 72 FKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRR 131
Query: 282 FNRKARLELHM 292
F + + HM
Sbjct: 132 FANSSDRKKHM 142
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 37/68 (54%), Gaps = 4/68 (5%)
Query: 123 HERLH-AEKLYECDI--CKNRFPSSGAMKKHRRKHTGERPYECK-EVCGRVFNRKDNLRE 178
H R+H EK + C C F S +K H+R HTGE+P++C+ E C R F + ++
Sbjct: 81 HIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKK 140
Query: 179 HLRAHAGE 186
H+ H +
Sbjct: 141 HMHVHTSD 148
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 222 CYARFAAKETLNRHMKTHSGVKPHVCEY--CEKAFIQASQLKAHMFHHTGE 270
C FA E L H +TH+G KP CE+ C++ F +S K HM HT +
Sbjct: 98 CGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVHTSD 148
Score = 37.0 bits (84), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 52/123 (42%), Gaps = 12/123 (9%)
Query: 46 KGCYRIFTSQ----GYMLLSYKSKEEEKQICTYIKVC---GRVFNRKDNLREHLRAHAGE 98
K C R F++ ++ + + E+ Y + C G+ F K L H+R H GE
Sbjct: 29 KSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGE 88
Query: 99 TXXXXXXXXXXXXXQFYGLTLLRIHERLH-AEKLYECDI--CKNRFPSSGAMKKHRRKHT 155
F L+IH+R H EK ++C+ C RF +S KKH HT
Sbjct: 89 KPFPCPFPGCGKI--FARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVHT 146
Query: 156 GER 158
++
Sbjct: 147 SDK 149
>pdb|1LLM|C Chain C, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
pdb|1LLM|D Chain D, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
Length = 88
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 30/50 (60%)
Query: 327 VKPHKCPICTKGFTMKSSLKIHLLTHTKEPPKSCEVCGRAFIRQDCLIRH 376
+KP +C IC + F+ L H+ THT E P +C++CGR F R D RH
Sbjct: 1 MKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRH 50
Score = 46.2 bits (108), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 130 KLYECDICKNRFPSSGAMKKHRRKHTGERPYECKEVCGRVFNRKDNLREH 179
K ++C IC F S + H R HTGE+P+ C ++CGR F R D + H
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFAC-DICGRKFARSDERKRH 50
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 25/48 (52%)
Query: 301 PYQCDICRKTFIRKEDLTRHCLLHTGVKPHKCPICTKGFTMKSSLKIH 348
P+QC IC + F R + LT H HTG KP C IC + F K H
Sbjct: 3 PFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRH 50
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 275 CELCNKTFNRKARLELHMKYIHEGADPYQCDICRKTFIRKEDLTRH 320
C +C + F+R L H++ H G P+ CDIC + F R ++ RH
Sbjct: 6 CRICMRNFSRSDHLTTHIR-THTGEKPFACDICGRKFARSDERKRH 50
Score = 38.5 bits (88), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 25/44 (56%)
Query: 220 RTCYARFAAKETLNRHMKTHSGVKPHVCEYCEKAFIQASQLKAH 263
R C F+ + L H++TH+G KP C+ C + F ++ + K H
Sbjct: 7 RICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRH 50
Score = 37.7 bits (86), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 26/55 (47%)
Query: 242 VKPHVCEYCEKAFIQASQLKAHMFHHTGENGHTCELCNKTFNRKARLELHMKYIH 296
+KP C C + F ++ L H+ HTGE C++C + F R + H H
Sbjct: 1 MKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQH 55
Score = 33.5 bits (75), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 29/76 (38%), Gaps = 31/76 (40%)
Query: 76 KVCGRVFNRKDNLREHLRAHAGETXXXXXXXXXXXXXQFYGLTLLRIHERLHAEKLYECD 135
++C R F+R D+L H+R H GE K + CD
Sbjct: 7 RICMRNFSRSDHLTTHIRTHTGE-------------------------------KPFACD 35
Query: 136 ICKNRFPSSGAMKKHR 151
IC +F S K+HR
Sbjct: 36 ICGRKFARSDERKRHR 51
Score = 32.7 bits (73), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 21/29 (72%), Gaps = 1/29 (3%)
Query: 158 RPYECKEVCGRVFNRKDNLREHLRAHAGE 186
+P++C+ +C R F+R D+L H+R H GE
Sbjct: 2 KPFQCR-ICMRNFSRSDHLTTHIRTHTGE 29
>pdb|1X6E|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain Of
Human Zinc Finger Protein 24
Length = 72
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 129 EKLYECDICKNRFPSSGAMKKHRRKHTGERPYECKEVCGRVFNRKDNLREHLRAH 183
EK Y C C F S + +H+R HTGE+PY+C E CG+ F++ L H R H
Sbjct: 12 EKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLE-CGKAFSQNSGLINHQRIH 65
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 29/56 (51%)
Query: 301 PYQCDICRKTFIRKEDLTRHCLLHTGVKPHKCPICTKGFTMKSSLKIHLLTHTKEP 356
PY C C K F R L +H +HTG KP+KC C K F+ S L H HT P
Sbjct: 14 PYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHTSGP 69
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 26/51 (50%)
Query: 328 KPHKCPICTKGFTMKSSLKIHLLTHTKEPPKSCEVCGRAFIRQDCLIRHLR 378
KP+ C C K F+ S L H HT E P C CG+AF + LI H R
Sbjct: 13 KPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQR 63
Score = 38.1 bits (87), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Query: 212 ERLHGLIERTCYARFAAKETLNRHMKTHSGVKPHVCEYCEKAFIQASQLKAHMFHHT 268
E+ +G +E C F+ L +H + H+G KP+ C C KAF Q S L H HT
Sbjct: 12 EKPYGCVE--CGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHT 66
Score = 37.4 bits (85), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 28/51 (54%)
Query: 243 KPHVCEYCEKAFIQASQLKAHMFHHTGENGHTCELCNKTFNRKARLELHMK 293
KP+ C C KAF ++S L H HTGE + C C K F++ + L H +
Sbjct: 13 KPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQR 63
Score = 33.9 bits (76), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Query: 157 ERPYECKEVCGRVFNRKDNLREHLRAHAGE 186
E+PY C E CG+ F+R L +H R H GE
Sbjct: 12 EKPYGCVE-CGKAFSRSSILVQHQRVHTGE 40
>pdb|2EL5|A Chain A, Solution Structure Of The 18th Zf-C2h2 Domain From Human
Zinc Finger Protein 268
Length = 42
Score = 47.8 bits (112), Expect = 2e-05, Method: Composition-based stats.
Identities = 21/33 (63%), Positives = 24/33 (72%), Gaps = 1/33 (3%)
Query: 155 TGERPYECKEVCGRVFNRKDNLREHLRAHAGET 187
+GE PYEC E CG+ FNRKD L H R HAGE+
Sbjct: 6 SGENPYECSE-CGKAFNRKDQLISHQRTHAGES 37
Score = 35.4 bits (80), Expect = 0.13, Method: Composition-based stats.
Identities = 14/22 (63%), Positives = 16/22 (72%)
Query: 78 CGRVFNRKDNLREHLRAHAGET 99
CG+ FNRKD L H R HAGE+
Sbjct: 16 CGKAFNRKDQLISHQRTHAGES 37
Score = 32.7 bits (73), Expect = 0.79, Method: Composition-based stats.
Identities = 15/33 (45%), Positives = 19/33 (57%)
Query: 240 SGVKPHVCEYCEKAFIQASQLKAHMFHHTGENG 272
SG P+ C C KAF + QL +H H GE+G
Sbjct: 6 SGENPYECSECGKAFNRKDQLISHQRTHAGESG 38
Score = 31.6 bits (70), Expect = 2.0, Method: Composition-based stats.
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 298 GADPYQCDICRKTFIRKEDLTRHCLLHTG 326
G +PY+C C K F RK+ L H H G
Sbjct: 7 GENPYECSECGKAFNRKDQLISHQRTHAG 35
Score = 30.0 bits (66), Expect = 5.3, Method: Composition-based stats.
Identities = 13/24 (54%), Positives = 15/24 (62%)
Query: 355 EPPKSCEVCGRAFIRQDCLIRHLR 378
E P C CG+AF R+D LI H R
Sbjct: 8 ENPYECSECGKAFNRKDQLISHQR 31
Score = 29.3 bits (64), Expect = 9.5, Method: Composition-based stats.
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 268 TGENGHTCELCNKTFNRKARLELHMK 293
+GEN + C C K FNRK +L H +
Sbjct: 6 SGENPYECSECGKAFNRKDQLISHQR 31
>pdb|1X6H|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain Of
Human Transcriptional Repressor Ctcf
Length = 86
Score = 45.8 bits (107), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 32/60 (53%), Gaps = 9/60 (15%)
Query: 267 HTGENGHTCELCNKTFNRKARLELHMKYIHEGADP------YQCDICRKTFIRKEDLTRH 320
HTGE + C C+KTF +K L++H K H DP + C C KTF R+ + RH
Sbjct: 10 HTGEKPYACSHCDKTFRQKQLLDMHFKRYH---DPNFVPAAFVCSKCGKTFTRRNTMARH 66
Score = 39.3 bits (90), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 4/60 (6%)
Query: 237 KTHSGVKPHVCEYCEKAFIQASQLKAHMFHHTGEN----GHTCELCNKTFNRKARLELHM 292
+TH+G KP+ C +C+K F Q L H + N C C KTF R+ + H
Sbjct: 8 RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHA 67
Score = 35.8 bits (81), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 6/59 (10%)
Query: 324 HTGVKPHKCPICTKGFTMKSSLKIHLLTHTKEP---PKS--CEVCGRAFIRQDCLIRHL 377
HTG KP+ C C K F K L +H + +P P + C CG+ F R++ + RH
Sbjct: 10 HTGEKPYACSHCDKTFRQKQLLDMHFKRY-HDPNFVPAAFVCSKCGKTFTRRNTMARHA 67
Score = 29.3 bits (64), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 145 GAMKKHRRKHTGERPYECKEVCGRVFNRKDNLREHLR 181
G+ R HTGE+PY C C + F +K L H +
Sbjct: 1 GSSGSSGRTHTGEKPYACSH-CDKTFRQKQLLDMHFK 36
>pdb|4GZN|C Chain C, Mouse Zfp57 Zinc Fingers In Complex With Methylated Dna
Length = 60
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 29/56 (51%)
Query: 301 PYQCDICRKTFIRKEDLTRHCLLHTGVKPHKCPICTKGFTMKSSLKIHLLTHTKEP 356
P+ C+ C KT+ L+RH H G +P CP C K F +S + HL H +P
Sbjct: 4 PFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQNKP 59
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 128 AEKLYECDICKNRFPSSGAMKKHRRKHTGERPYECKEVCGRVFNRKDNLREHLRAH 183
+E+ + C+ C + + + +HRR H G RP C E CG+ F + + HL+ H
Sbjct: 1 SERPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPE-CGKCFRDQSEVNRHLKVH 55
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 24/51 (47%)
Query: 243 KPHVCEYCEKAFIQASQLKAHMFHHTGENGHTCELCNKTFNRKARLELHMK 293
+P C +C K + AS L H H G +C C K F ++ + H+K
Sbjct: 3 RPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLK 53
Score = 34.3 bits (77), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 24/51 (47%)
Query: 328 KPHKCPICTKGFTMKSSLKIHLLTHTKEPPKSCEVCGRAFIRQDCLIRHLR 378
+P C C K + S L H H P+SC CG+ F Q + RHL+
Sbjct: 3 RPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLK 53
Score = 30.4 bits (67), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 5/51 (9%)
Query: 219 ERTCYARFAAK-----ETLNRHMKTHSGVKPHVCEYCEKAFIQASQLKAHM 264
ER + F K L+RH + H G +P C C K F S++ H+
Sbjct: 2 ERPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHL 52
Score = 29.6 bits (65), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Query: 275 CELCNKTFNRKARLELHMKYIHEGADPYQCDICRKTFIRKEDLTRHCLLH 324
C C KT+ + L H + H G P C C K F + ++ RH +H
Sbjct: 7 CNFCGKTYRDASGLSRHRR-AHLGYRPRSCPECGKCFRDQSEVNRHLKVH 55
>pdb|1TF3|A Chain A, Tfiiia Finger 1-3 Bound To Dna, Nmr, 22 Structures
Length = 92
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 35/79 (44%), Gaps = 4/79 (5%)
Query: 222 CYARFAAKETLNRHMKTHSGVKPHVC--EYCEKAFIQASQLKAHMFHHTGENGHTCEL-- 277
C A + L H+ H+G KP C E CEK F L H HTGE TC+
Sbjct: 11 CGAAYNKNWKLQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDG 70
Query: 278 CNKTFNRKARLELHMKYIH 296
C+ F KA ++ H H
Sbjct: 71 CDLRFTTKANMKKHFNRFH 89
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 37/76 (48%), Gaps = 5/76 (6%)
Query: 278 CNKTFNRKARLELHMKYIHEGADPYQC--DICRKTFIRKEDLTRHCLLHTGVKPHKCPI- 334
C +N+ +L+ H+ H G P+ C + C K F LTRH L HTG K C
Sbjct: 11 CGAAYNKNWKLQAHLS-KHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSD 69
Query: 335 -CTKGFTMKSSLKIHL 349
C FT K+++K H
Sbjct: 70 GCDLRFTTKANMKKHF 85
Score = 35.0 bits (79), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 34/79 (43%), Gaps = 4/79 (5%)
Query: 307 CRKTFIRKEDLTRHCLLHTGVKPHKCPI--CTKGFTMKSSLKIHLLTHTKEPPKSCEV-- 362
C + + L H HTG KP C C KGFT L H LTHT E +C+
Sbjct: 11 CGAAYNKNWKLQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDG 70
Query: 363 CGRAFIRQDCLIRHLRQKH 381
C F + + +H + H
Sbjct: 71 CDLRFTTKANMKKHFNRFH 89
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
Query: 130 KLYECDI--CKNRFPSSGAMKKHRRKHTGERPYECKEV-CGRVFNRKDNLREHLRAHAGE 186
K Y C C + + ++ H KHTGE+P+ CKE C + F +L H H GE
Sbjct: 2 KRYICSFADCGAAYNKNWKLQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGE 61
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 36/86 (41%), Gaps = 6/86 (6%)
Query: 68 EKQICTYIKVCGRVFNRKDNLREHLRAHAGETXXXXXXXXXXXXXQFYGLTLLRIHERLH 127
++ IC++ CG +N+ L+ HL H GE F L L H H
Sbjct: 2 KRYICSFAD-CGAAYNKNWKLQAHLSKHTGE--KPFPCKEEGCEKGFTSLHHLTRHSLTH 58
Query: 128 -AEKLYECDI--CKNRFPSSGAMKKH 150
EK + CD C RF + MKKH
Sbjct: 59 TGEKNFTCDSDGCDLRFTTKANMKKH 84
>pdb|3UK3|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|3UK3|D Chain D, Crystal Structure Of Znf217 Bound To Dna
pdb|4F2J|C Chain C, Crystal Structure Of Znf217 Bound To Dna, P6522 Crystal
Form
pdb|4IS1|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|4IS1|D Chain D, Crystal Structure Of Znf217 Bound To Dna
Length = 57
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 27/57 (47%)
Query: 298 GADPYQCDICRKTFIRKEDLTRHCLLHTGVKPHKCPICTKGFTMKSSLKIHLLTHTK 354
G+ +C C K F L H HTG KP+KC C K+SL+ HL H K
Sbjct: 1 GSSSRECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERHHK 57
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 27/57 (47%)
Query: 326 GVKPHKCPICTKGFTMKSSLKIHLLTHTKEPPKSCEVCGRAFIRQDCLIRHLRQKHR 382
G +C C K F L IHL THT E P CE C A ++ L HL + H+
Sbjct: 1 GSSSRECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERHHK 57
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 133 ECDICKNRFPSSGAMKKHRRKHTGERPYECKEVCGRVFNRKDNLREHLRAH 183
EC C F S+ + H R HTGE+PY+C E C +K +LR HL H
Sbjct: 6 ECSYCGKFFRSNYYLNIHLRTHTGEKPYKC-EFCEYAAAQKTSLRYHLERH 55
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 27/42 (64%)
Query: 226 FAAKETLNRHMKTHSGVKPHVCEYCEKAFIQASQLKAHMFHH 267
F + LN H++TH+G KP+ CE+CE A Q + L+ H+ H
Sbjct: 14 FRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERH 55
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 25/57 (43%)
Query: 241 GVKPHVCEYCEKAFIQASQLKAHMFHHTGENGHTCELCNKTFNRKARLELHMKYIHE 297
G C YC K F L H+ HTGE + CE C +K L H++ H+
Sbjct: 1 GSSSRECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERHHK 57
Score = 35.0 bits (79), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
Query: 269 GENGHTCELCNKTFNRKARLELHMKYIHEGADPYQCDICRKTFIRKEDLTRH 320
G + C C K F L +H++ H G PY+C+ C +K L H
Sbjct: 1 GSSSRECSYCGKFFRSNYYLNIHLR-THTGEKPYKCEFCEYAAAQKTSLRYH 51
>pdb|2YSV|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 17 In
Zinc Finger Protein 473
Length = 42
Score = 40.8 bits (94), Expect = 0.003, Method: Composition-based stats.
Identities = 19/33 (57%), Positives = 23/33 (69%)
Query: 240 SGVKPHVCEYCEKAFIQASQLKAHMFHHTGENG 272
SG KP+VC+ C KAF Q+S L H HTGE+G
Sbjct: 6 SGEKPYVCQECGKAFTQSSCLSIHRRVHTGESG 38
Score = 35.8 bits (81), Expect = 0.10, Method: Composition-based stats.
Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Query: 155 TGERPYECKEVCGRVFNRKDNLREHLRAHAGET 187
+GE+PY C+E CG+ F + L H R H GE+
Sbjct: 6 SGEKPYVCQE-CGKAFTQSSCLSIHRRVHTGES 37
Score = 32.7 bits (73), Expect = 0.84, Method: Composition-based stats.
Identities = 15/31 (48%), Positives = 17/31 (54%)
Query: 325 TGVKPHKCPICTKGFTMKSSLKIHLLTHTKE 355
+G KP+ C C K FT S L IH HT E
Sbjct: 6 SGEKPYVCQECGKAFTQSSCLSIHRRVHTGE 36
Score = 31.6 bits (70), Expect = 2.1, Method: Composition-based stats.
Identities = 14/30 (46%), Positives = 15/30 (50%)
Query: 128 AEKLYECDICKNRFPSSGAMKKHRRKHTGE 157
EK Y C C F S + HRR HTGE
Sbjct: 7 GEKPYVCQECGKAFTQSSCLSIHRRVHTGE 36
>pdb|2EOG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
693- 723) Of Human Zinc Finger Protein 268
Length = 44
Score = 40.0 bits (92), Expect = 0.005, Method: Composition-based stats.
Identities = 18/33 (54%), Positives = 21/33 (63%)
Query: 325 TGVKPHKCPICTKGFTMKSSLKIHLLTHTKEPP 357
+GVKP+ C C K F KS L IH+ THT E P
Sbjct: 6 SGVKPYGCSECGKAFRSKSYLIIHMRTHTGEKP 38
Score = 37.0 bits (84), Expect = 0.041, Method: Composition-based stats.
Identities = 18/31 (58%), Positives = 19/31 (61%)
Query: 240 SGVKPHVCEYCEKAFIQASQLKAHMFHHTGE 270
SGVKP+ C C KAF S L HM HTGE
Sbjct: 6 SGVKPYGCSECGKAFRSKSYLIIHMRTHTGE 36
Score = 34.3 bits (77), Expect = 0.26, Method: Composition-based stats.
Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 155 TGERPYECKEVCGRVFNRKDNLREHLRAHAGE 186
+G +PY C E CG+ F K L H+R H GE
Sbjct: 6 SGVKPYGCSE-CGKAFRSKSYLIIHMRTHTGE 36
Score = 31.2 bits (69), Expect = 2.2, Method: Composition-based stats.
Identities = 15/32 (46%), Positives = 15/32 (46%)
Query: 298 GADPYQCDICRKTFIRKEDLTRHCLLHTGVKP 329
G PY C C K F K L H HTG KP
Sbjct: 7 GVKPYGCSECGKAFRSKSYLIIHMRTHTGEKP 38
Score = 29.6 bits (65), Expect = 7.4, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 15/30 (50%)
Query: 130 KLYECDICKNRFPSSGAMKKHRRKHTGERP 159
K Y C C F S + H R HTGE+P
Sbjct: 9 KPYGCSECGKAFRSKSYLIIHMRTHTGEKP 38
>pdb|2CT1|A Chain A, Solution Structure Of The Zinc Finger Domain Of
Transcriptional Repressor Ctcf Protein
Length = 77
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
Query: 237 KTHSGVKPHVCEYCEKAFIQASQLKAHMFHHTGEN--GHTCELCNKTFNRKARLELHMKY 294
+THSG KP+ C C F Q+ +K H+ EN C C+ RK+ L +H++
Sbjct: 8 RTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRK 67
Query: 295 IHEGADP 301
H + P
Sbjct: 68 QHSYSGP 74
Score = 38.9 bits (89), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 34/60 (56%), Gaps = 2/60 (3%)
Query: 324 HTGVKPHKCPICTKGFTMKSSLKIHLLT-HTKEPPK-SCEVCGRAFIRQDCLIRHLRQKH 381
H+G KP++C IC FT ++K+H+L HT+ K C C R+ L HLR++H
Sbjct: 10 HSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQH 69
Score = 38.5 bits (88), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Query: 128 AEKLYECDICKNRFPSSGAMKKH-RRKHTGE-RPYECKEVCGRVFNRKDNLREHLR 181
EK YEC IC RF SG MK H +KHT + C C V RK +L HLR
Sbjct: 12 GEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPH-CDTVIARKSDLGVHLR 66
Score = 34.3 bits (77), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 29/68 (42%), Gaps = 3/68 (4%)
Query: 295 IHEGADPYQCDICRKTFIRKEDLTRHCLL-HT-GVKPHKCPICTKGFTMKSSLKIHLL-T 351
H G PY+C IC F + + H L HT V CP C KS L +HL
Sbjct: 9 THSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQ 68
Query: 352 HTKEPPKS 359
H+ P S
Sbjct: 69 HSYSGPSS 76
>pdb|2ENH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
556- 588) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 20/29 (68%)
Query: 301 PYQCDICRKTFIRKEDLTRHCLLHTGVKP 329
PY+CD+CRK F LT+H +H+G KP
Sbjct: 12 PYECDVCRKAFSHHASLTQHQRVHSGEKP 40
Score = 38.9 bits (89), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 22/31 (70%)
Query: 129 EKLYECDICKNRFPSSGAMKKHRRKHTGERP 159
EK YECD+C+ F ++ +H+R H+GE+P
Sbjct: 10 EKPYECDVCRKAFSHHASLTQHQRVHSGEKP 40
Score = 33.1 bits (74), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Query: 157 ERPYECKEVCGRVFNRKDNLREHLRAHAGE 186
E+PYEC +VC + F+ +L +H R H+GE
Sbjct: 10 EKPYEC-DVCRKAFSHHASLTQHQRVHSGE 38
Score = 29.3 bits (64), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 328 KPHKCPICTKGFTMKSSLKIHLLTHTKEPP 357
KP++C +C K F+ +SL H H+ E P
Sbjct: 11 KPYECDVCRKAFSHHASLTQHQRVHSGEKP 40
>pdb|2EOJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
355- 385) Of Human Zinc Finger Protein 268
Length = 44
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 23/31 (74%), Gaps = 1/31 (3%)
Query: 157 ERPYECKEVCGRVFNRKDNLREHLRAHAGET 187
E PYEC E CG+VF+RKD L H + H+G++
Sbjct: 10 ENPYECCE-CGKVFSRKDQLVSHQKTHSGQS 39
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 17/22 (77%)
Query: 78 CGRVFNRKDNLREHLRAHAGET 99
CG+VF+RKD L H + H+G++
Sbjct: 18 CGKVFSRKDQLVSHQKTHSGQS 39
Score = 29.3 bits (64), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 300 DPYQCDICRKTFIRKEDLTRHCLLHTG 326
+PY+C C K F RK+ L H H+G
Sbjct: 11 NPYECCECGKVFSRKDQLVSHQKTHSG 37
>pdb|2EPA|A Chain A, Solution Structure Of The First And Second Zf-C2h2 Domains
From Human Krueppel-Like Factor 10
Length = 72
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
Query: 327 VKPHKC--PICTKGFTMKSSLKIHLLTHTKEPPKSCEV--CGRAFIRQDCLIRHLR 378
++ H C P C K + S LK H THT E P SC C R F R D L RH R
Sbjct: 15 IRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRR 70
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 137 CKNRFPSSGAMKKHRRKHTGERPYECK-EVCGRVFNRKDNLREHLRAH 183
C + S +K H R HTGE+P+ C + C R F R D L H R H
Sbjct: 25 CGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH 72
Score = 38.1 bits (87), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
Query: 240 SGVKPHVCEY--CEKAFIQASQLKAHMFHHTGENGHTCEL--CNKTFNRKARLELHMK 293
S ++ H+C + C K + ++S LKAH HTGE +C C + F R L H +
Sbjct: 13 SRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRR 70
Score = 30.4 bits (67), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Query: 222 CYARFAAKETLNRHMKTHSGVKPHVCEY--CEKAFIQASQLKAHMFHH 267
C + L H +TH+G KP C + CE+ F ++ +L H H
Sbjct: 25 CGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH 72
Score = 30.0 bits (66), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 20/48 (41%), Gaps = 2/48 (4%)
Query: 307 CRKTFIRKEDLTRHCLLHTGVKPHKCPI--CTKGFTMKSSLKIHLLTH 352
C KT+ + L H HTG KP C C + F L H TH
Sbjct: 25 CGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH 72
Score = 29.3 bits (64), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 24/58 (41%), Gaps = 2/58 (3%)
Query: 40 VPGHLCK--GCYRIFTSQGYMLLSYKSKEEEKQICTYIKVCGRVFNRKDNLREHLRAH 95
+ H+C GC + + ++ ++ EK K C R F R D L H R H
Sbjct: 15 IRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH 72
>pdb|2EM6|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
199- 231) Of Human Zinc Finger Protein 224
Length = 46
Score = 39.3 bits (90), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 129 EKLYECDICKNRFPSSGAMKKHRRKHTGERP 159
EK Y+CD+C F S ++ H+R HTGE+P
Sbjct: 10 EKCYKCDVCGKEFSQSSHLQTHQRVHTGEKP 40
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 302 YQCDICRKTFIRKEDLTRHCLLHTGVKP 329
Y+CD+C K F + L H +HTG KP
Sbjct: 13 YKCDVCGKEFSQSSHLQTHQRVHTGEKP 40
Score = 30.8 bits (68), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Query: 157 ERPYECKEVCGRVFNRKDNLREHLRAHAGE 186
E+ Y+C +VCG+ F++ +L+ H R H GE
Sbjct: 10 EKCYKC-DVCGKEFSQSSHLQTHQRVHTGE 38
>pdb|2EQW|A Chain A, Solution Structure Of The 6th C2h2 Type Zinc Finger Domain
Of Zinc Finger Protein 484
Length = 42
Score = 38.5 bits (88), Expect = 0.016, Method: Composition-based stats.
Identities = 18/33 (54%), Positives = 21/33 (63%)
Query: 240 SGVKPHVCEYCEKAFIQASQLKAHMFHHTGENG 272
SG KP+VC C KAFI+ S H HTGE+G
Sbjct: 6 SGEKPYVCTECGKAFIRKSHFITHERIHTGESG 38
Score = 36.6 bits (83), Expect = 0.064, Method: Composition-based stats.
Identities = 16/33 (48%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Query: 155 TGERPYECKEVCGRVFNRKDNLREHLRAHAGET 187
+GE+PY C E CG+ F RK + H R H GE+
Sbjct: 6 SGEKPYVCTE-CGKAFIRKSHFITHERIHTGES 37
Score = 32.0 bits (71), Expect = 1.5, Method: Composition-based stats.
Identities = 14/29 (48%), Positives = 15/29 (51%)
Query: 298 GADPYQCDICRKTFIRKEDLTRHCLLHTG 326
G PY C C K FIRK H +HTG
Sbjct: 7 GEKPYVCTECGKAFIRKSHFITHERIHTG 35
>pdb|1BBO|A Chain A, High-Resolution Solution Structure Of The Double Cys2His2
Zinc Finger From The Human Enhancer Binding Protein
Mbp-1
Length = 57
Score = 38.1 bits (87), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 132 YECDICKNRFPSSGAMKKHRRKHTGERPYECKEVCGRVFNRKDNLREHLRAHA 184
Y C+ C R +KKH R HT RPY C C F K NL +H+++ A
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHC-TYCNFSFKTKGNLTKHMKSKA 53
Score = 33.9 bits (76), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 22/43 (51%)
Query: 222 CYARFAAKETLNRHMKTHSGVKPHVCEYCEKAFIQASQLKAHM 264
C R L +H++TH+ V+P+ C YC +F L HM
Sbjct: 7 CGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHM 49
Score = 32.7 bits (73), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 24/49 (48%)
Query: 245 HVCEYCEKAFIQASQLKAHMFHHTGENGHTCELCNKTFNRKARLELHMK 293
++CE C + S LK H+ HT + C CN +F K L HMK
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMK 50
>pdb|2EN0|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
385- 413) Of Human Zinc Finger Protein 268
Length = 42
Score = 37.7 bits (86), Expect = 0.023, Method: Composition-based stats.
Identities = 19/33 (57%), Positives = 21/33 (63%)
Query: 240 SGVKPHVCEYCEKAFIQASQLKAHMFHHTGENG 272
SG KP+VC C KAF SQL H HTGE+G
Sbjct: 6 SGQKPYVCNECGKAFGLKSQLIIHERIHTGESG 38
Score = 34.7 bits (78), Expect = 0.25, Method: Composition-based stats.
Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 155 TGERPYECKEVCGRVFNRKDNLREHLRAHAGET 187
+G++PY C E CG+ F K L H R H GE+
Sbjct: 6 SGQKPYVCNE-CGKAFGLKSQLIIHERIHTGES 37
Score = 32.3 bits (72), Expect = 1.2, Method: Composition-based stats.
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 325 TGVKPHKCPICTKGFTMKSSLKIHLLTHTKE 355
+G KP+ C C K F +KS L IH HT E
Sbjct: 6 SGQKPYVCNECGKAFGLKSQLIIHERIHTGE 36
>pdb|2DRP|A Chain A, The Crystal Structure Of A Two Zinc-Finger Peptide Reveals
An Extension To The Rules For Zinc-FingerDNA RECOGNITION
pdb|2DRP|D Chain D, The Crystal Structure Of A Two Zinc-Finger Peptide Reveals
An Extension To The Rules For Zinc-FingerDNA RECOGNITION
Length = 66
Score = 37.7 bits (86), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Query: 292 MKYIHEGADPYQCDICRKTFIRKEDLTRHCLLH--TGVKPHKCPICTKGFTMKSSLKIHL 349
M++ EG Y+C +C + + + RH + VK + CP C K FT K ++ H+
Sbjct: 1 MEFTKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHV 60
Score = 31.2 bits (69), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 269 GENGHTCELCNKTFNRKARLELHMKYIHE-GADPYQCDICRKTFIRKEDLTRH 320
GE+ + C++C++ + + H H+ Y C C K F RK+++T H
Sbjct: 7 GEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAH 59
>pdb|2EOF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
411- 441) Of Human Zinc Finger Protein 268
Length = 44
Score = 37.7 bits (86), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 157 ERPYECKEVCGRVFNRKDNLREHLRAHAGET 187
E+PYEC E C + FN K NL H R H GE+
Sbjct: 10 EKPYECNE-CQKAFNTKSNLMVHQRTHTGES 39
Score = 32.7 bits (73), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 18/30 (60%)
Query: 243 KPHVCEYCEKAFIQASQLKAHMFHHTGENG 272
KP+ C C+KAF S L H HTGE+G
Sbjct: 11 KPYECNECQKAFNTKSNLMVHQRTHTGESG 40
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 328 KPHKCPICTKGFTMKSSLKIHLLTHTKE 355
KP++C C K F KS+L +H THT E
Sbjct: 11 KPYECNECQKAFNTKSNLMVHQRTHTGE 38
Score = 30.8 bits (68), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 129 EKLYECDICKNRFPSSGAMKKHRRKHTGE 157
EK YEC+ C+ F + + H+R HTGE
Sbjct: 10 EKPYECNECQKAFNTKSNLMVHQRTHTGE 38
Score = 29.6 bits (65), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 301 PYQCDICRKTFIRKEDLTRHCLLHTG 326
PY+C+ C+K F K +L H HTG
Sbjct: 12 PYECNECQKAFNTKSNLMVHQRTHTG 37
>pdb|2EOL|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
581- 609) Of Human Zinc Finger Protein 268
Length = 42
Score = 37.7 bits (86), Expect = 0.026, Method: Composition-based stats.
Identities = 16/33 (48%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Query: 155 TGERPYECKEVCGRVFNRKDNLREHLRAHAGET 187
+GE+PYEC + CG+ F K L H R H GE+
Sbjct: 6 SGEKPYECTD-CGKAFGLKSQLIIHQRTHTGES 37
Score = 36.2 bits (82), Expect = 0.085, Method: Composition-based stats.
Identities = 16/31 (51%), Positives = 20/31 (64%)
Query: 325 TGVKPHKCPICTKGFTMKSSLKIHLLTHTKE 355
+G KP++C C K F +KS L IH THT E
Sbjct: 6 SGEKPYECTDCGKAFGLKSQLIIHQRTHTGE 36
Score = 35.8 bits (81), Expect = 0.10, Method: Composition-based stats.
Identities = 18/33 (54%), Positives = 20/33 (60%)
Query: 240 SGVKPHVCEYCEKAFIQASQLKAHMFHHTGENG 272
SG KP+ C C KAF SQL H HTGE+G
Sbjct: 6 SGEKPYECTDCGKAFGLKSQLIIHQRTHTGESG 38
>pdb|2EPQ|A Chain A, Solution Structure Of The Third Zinc Finger Domain Of Zinc
Finger Protein 278
Length = 45
Score = 37.7 bits (86), Expect = 0.027, Method: Composition-based stats.
Identities = 16/31 (51%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Query: 155 TGERPYECKEVCGRVFNRKDNLREHLRAHAG 185
+GE+PY C VCG F RKD + H+R+H G
Sbjct: 6 SGEKPYSCP-VCGLRFKRKDRMSYHVRSHDG 35
Score = 29.3 bits (64), Expect = 8.3, Method: Composition-based stats.
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 325 TGVKPHKCPICTKGFTMKSSLKIHLLTHTKEPPKS 359
+G KP+ CP+C F K + H+ +H KS
Sbjct: 6 SGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKS 40
>pdb|2EOQ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
283- 315) Of Human Zinc Finger Protein 224
Length = 46
Score = 37.7 bits (86), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 20/29 (68%)
Query: 301 PYQCDICRKTFIRKEDLTRHCLLHTGVKP 329
P++CDIC K+F + L RH ++HT KP
Sbjct: 12 PFKCDICGKSFCGRSRLNRHSMVHTAEKP 40
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 17/30 (56%)
Query: 328 KPHKCPICTKGFTMKSSLKIHLLTHTKEPP 357
KP KC IC K F +S L H + HT E P
Sbjct: 11 KPFKCDICGKSFCGRSRLNRHSMVHTAEKP 40
Score = 29.3 bits (64), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 129 EKLYECDICKNRFPSSGAMKKHRRKHTGERP 159
EK ++CDIC F + +H HT E+P
Sbjct: 10 EKPFKCDICGKSFCGRSRLNRHSMVHTAEKP 40
>pdb|2EMV|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
859- 889) Of Human Zinc Finger Protein 268
Length = 44
Score = 37.7 bits (86), Expect = 0.029, Method: Composition-based stats.
Identities = 17/33 (51%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Query: 155 TGERPYECKEVCGRVFNRKDNLREHLRAHAGET 187
T E+PYEC E CG+ F R L H R H+GE+
Sbjct: 8 TREKPYECSE-CGKAFIRNSQLIVHQRTHSGES 39
Score = 36.6 bits (83), Expect = 0.067, Method: Composition-based stats.
Identities = 16/30 (53%), Positives = 20/30 (66%)
Query: 243 KPHVCEYCEKAFIQASQLKAHMFHHTGENG 272
KP+ C C KAFI+ SQL H H+GE+G
Sbjct: 11 KPYECSECGKAFIRNSQLIVHQRTHSGESG 40
Score = 32.7 bits (73), Expect = 0.92, Method: Composition-based stats.
Identities = 14/26 (53%), Positives = 16/26 (61%)
Query: 353 TKEPPKSCEVCGRAFIRQDCLIRHLR 378
T+E P C CG+AFIR LI H R
Sbjct: 8 TREKPYECSECGKAFIRNSQLIVHQR 33
Score = 29.6 bits (65), Expect = 7.8, Method: Composition-based stats.
Identities = 12/26 (46%), Positives = 14/26 (53%)
Query: 301 PYQCDICRKTFIRKEDLTRHCLLHTG 326
PY+C C K FIR L H H+G
Sbjct: 12 PYECSECGKAFIRNSQLIVHQRTHSG 37
>pdb|2EMY|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
551- 583) Of Human Zinc Finger Protein 268
Length = 46
Score = 37.4 bits (85), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 18/30 (60%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Query: 157 ERPYECKEVCGRVFNRKDNLREHLRAHAGE 186
E PYEC E CG+ F+RK L H R HAGE
Sbjct: 10 ENPYECHE-CGKAFSRKYQLISHQRTHAGE 38
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 16/30 (53%)
Query: 300 DPYQCDICRKTFIRKEDLTRHCLLHTGVKP 329
+PY+C C K F RK L H H G KP
Sbjct: 11 NPYECHECGKAFSRKYQLISHQRTHAGEKP 40
Score = 29.3 bits (64), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 14/21 (66%)
Query: 78 CGRVFNRKDNLREHLRAHAGE 98
CG+ F+RK L H R HAGE
Sbjct: 18 CGKAFSRKYQLISHQRTHAGE 38
>pdb|2LV2|A Chain A, Solution Nmr Structure Of C2h2-Type Zinc-Fingers 4 And 5
From Human Insulinoma-Associated Protein 1 (Fragment
424-497), Northeast Structural Genomics Consortium
Target Hr7614b
Length = 85
Score = 37.4 bits (85), Expect = 0.032, Method: Composition-based stats.
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 273 HTCELCNKTFNRKARLELHMKYIHEGADPYQCDICRKTFIRKEDLTRH 320
H C +C ++F K E H++ +H A + C C TF LTRH
Sbjct: 29 HLCPVCGESFASKGAQERHLRLLH-AAQVFPCKYCPATFYSSPGLTRH 75
Score = 32.0 bits (71), Expect = 1.4, Method: Composition-based stats.
Identities = 17/61 (27%), Positives = 25/61 (40%)
Query: 323 LHTGVKPHKCPICTKGFTMKSSLKIHLLTHTKEPPKSCEVCGRAFIRQDCLIRHLRQKHR 382
L + H CP+C + F K + + HL C+ C F L RH+ + H
Sbjct: 22 LSASAECHLCPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRHINKCHP 81
Query: 383 S 383
S
Sbjct: 82 S 82
>pdb|2ENA|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
311- 343) Of Human Zinc Finger Protein 224
Length = 46
Score = 37.4 bits (85), Expect = 0.034, Method: Composition-based stats.
Identities = 15/32 (46%), Positives = 18/32 (56%)
Query: 128 AEKLYECDICKNRFPSSGAMKKHRRKHTGERP 159
AEK + CD C F A+ HR HTGE+P
Sbjct: 9 AEKPFRCDTCDKSFRQRSALNSHRMIHTGEKP 40
Score = 36.2 bits (82), Expect = 0.086, Method: Composition-based stats.
Identities = 13/29 (44%), Positives = 20/29 (68%)
Query: 301 PYQCDICRKTFIRKEDLTRHCLLHTGVKP 329
P++CD C K+F ++ L H ++HTG KP
Sbjct: 12 PFRCDTCDKSFRQRSALNSHRMIHTGEKP 40
Score = 33.9 bits (76), Expect = 0.36, Method: Composition-based stats.
Identities = 14/33 (42%), Positives = 18/33 (54%)
Query: 325 TGVKPHKCPICTKGFTMKSSLKIHLLTHTKEPP 357
T KP +C C K F +S+L H + HT E P
Sbjct: 8 TAEKPFRCDTCDKSFRQRSALNSHRMIHTGEKP 40
Score = 33.1 bits (74), Expect = 0.61, Method: Composition-based stats.
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 243 KPHVCEYCEKAFIQASQLKAHMFHHTGE 270
KP C+ C+K+F Q S L +H HTGE
Sbjct: 11 KPFRCDTCDKSFRQRSALNSHRMIHTGE 38
>pdb|2EMK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
668- 700) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 37.4 bits (85), Expect = 0.039, Method: Composition-based stats.
Identities = 16/30 (53%), Positives = 22/30 (73%), Gaps = 1/30 (3%)
Query: 157 ERPYECKEVCGRVFNRKDNLREHLRAHAGE 186
E+PYECKE CG+ F++ +L +H R H GE
Sbjct: 10 EKPYECKE-CGKAFSQTTHLIQHQRVHTGE 38
Score = 33.5 bits (75), Expect = 0.52, Method: Composition-based stats.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 129 EKLYECDICKNRFPSSGAMKKHRRKHTGERP 159
EK YEC C F + + +H+R HTGE+P
Sbjct: 10 EKPYECKECGKAFSQTTHLIQHQRVHTGEKP 40
Score = 30.4 bits (67), Expect = 3.9, Method: Composition-based stats.
Identities = 14/28 (50%), Positives = 17/28 (60%)
Query: 243 KPHVCEYCEKAFIQASQLKAHMFHHTGE 270
KP+ C+ C KAF Q + L H HTGE
Sbjct: 11 KPYECKECGKAFSQTTHLIQHQRVHTGE 38
Score = 30.4 bits (67), Expect = 4.5, Method: Composition-based stats.
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 301 PYQCDICRKTFIRKEDLTRHCLLHTGVKP 329
PY+C C K F + L +H +HTG KP
Sbjct: 12 PYECKECGKAFSQTTHLIQHQRVHTGEKP 40
>pdb|2YTA|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 3 In
Zinc Finger Protein 32
Length = 41
Score = 37.0 bits (84), Expect = 0.041, Method: Composition-based stats.
Identities = 15/31 (48%), Positives = 23/31 (74%), Gaps = 1/31 (3%)
Query: 155 TGERPYECKEVCGRVFNRKDNLREHLRAHAG 185
+GE+PY+CKE CG+ F+++ +L H R H G
Sbjct: 6 SGEKPYQCKE-CGKSFSQRGSLAVHERLHTG 35
Score = 33.9 bits (76), Expect = 0.34, Method: Composition-based stats.
Identities = 14/35 (40%), Positives = 20/35 (57%)
Query: 325 TGVKPHKCPICTKGFTMKSSLKIHLLTHTKEPPKS 359
+G KP++C C K F+ + SL +H HT P S
Sbjct: 6 SGEKPYQCKECGKSFSQRGSLAVHERLHTGSGPSS 40
Score = 33.9 bits (76), Expect = 0.41, Method: Composition-based stats.
Identities = 15/32 (46%), Positives = 18/32 (56%)
Query: 298 GADPYQCDICRKTFIRKEDLTRHCLLHTGVKP 329
G PYQC C K+F ++ L H LHTG P
Sbjct: 7 GEKPYQCKECGKSFSQRGSLAVHERLHTGSGP 38
Score = 32.0 bits (71), Expect = 1.3, Method: Composition-based stats.
Identities = 13/32 (40%), Positives = 16/32 (50%)
Query: 128 AEKLYECDICKNRFPSSGAMKKHRRKHTGERP 159
EK Y+C C F G++ H R HTG P
Sbjct: 7 GEKPYQCKECGKSFSQRGSLAVHERLHTGSGP 38
Score = 30.8 bits (68), Expect = 3.5, Method: Composition-based stats.
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 240 SGVKPHVCEYCEKAFIQASQLKAHMFHHTG 269
SG KP+ C+ C K+F Q L H HTG
Sbjct: 6 SGEKPYQCKECGKSFSQRGSLAVHERLHTG 35
>pdb|2EP2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
603- 635) Of Human Zinc Finger Protein 484
Length = 46
Score = 37.0 bits (84), Expect = 0.041, Method: Composition-based stats.
Identities = 16/30 (53%), Positives = 19/30 (63%)
Query: 328 KPHKCPICTKGFTMKSSLKIHLLTHTKEPP 357
KP++C IC K FT KS L +H HT E P
Sbjct: 11 KPYECSICGKSFTKKSQLHVHQQIHTGEKP 40
Score = 36.2 bits (82), Expect = 0.078, Method: Composition-based stats.
Identities = 15/29 (51%), Positives = 19/29 (65%)
Query: 301 PYQCDICRKTFIRKEDLTRHCLLHTGVKP 329
PY+C IC K+F +K L H +HTG KP
Sbjct: 12 PYECSICGKSFTKKSQLHVHQQIHTGEKP 40
Score = 34.3 bits (77), Expect = 0.27, Method: Composition-based stats.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 129 EKLYECDICKNRFPSSGAMKKHRRKHTGERP 159
EK YEC IC F + H++ HTGE+P
Sbjct: 10 EKPYECSICGKSFTKKSQLHVHQQIHTGEKP 40
Score = 33.5 bits (75), Expect = 0.44, Method: Composition-based stats.
Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Query: 157 ERPYECKEVCGRVFNRKDNLREHLRAHAGE 186
E+PYEC +CG+ F +K L H + H GE
Sbjct: 10 EKPYEC-SICGKSFTKKSQLHVHQQIHTGE 38
Score = 32.0 bits (71), Expect = 1.4, Method: Composition-based stats.
Identities = 14/28 (50%), Positives = 17/28 (60%)
Query: 243 KPHVCEYCEKAFIQASQLKAHMFHHTGE 270
KP+ C C K+F + SQL H HTGE
Sbjct: 11 KPYECSICGKSFTKKSQLHVHQQIHTGE 38
Score = 29.6 bits (65), Expect = 8.1, Method: Composition-based stats.
Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 270 ENGHTCELCNKTFNRKARLELHMKYIHEGADP 301
E + C +C K+F +K++L +H + IH G P
Sbjct: 10 EKPYECSICGKSFTKKSQLHVHQQ-IHTGEKP 40
>pdb|2EOK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
441- 469) Of Human Zinc Finger Protein 268
Length = 42
Score = 37.0 bits (84), Expect = 0.044, Method: Composition-based stats.
Identities = 18/33 (54%), Positives = 20/33 (60%)
Query: 240 SGVKPHVCEYCEKAFIQASQLKAHMFHHTGENG 272
SG KP+VC C KAF SQL H HTG +G
Sbjct: 6 SGEKPYVCSDCGKAFTFKSQLIVHQGIHTGVSG 38
Score = 32.7 bits (73), Expect = 0.90, Method: Composition-based stats.
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 325 TGVKPHKCPICTKGFTMKSSLKIHLLTHT 353
+G KP+ C C K FT KS L +H HT
Sbjct: 6 SGEKPYVCSDCGKAFTFKSQLIVHQGIHT 34
Score = 30.4 bits (67), Expect = 3.8, Method: Composition-based stats.
Identities = 14/30 (46%), Positives = 15/30 (50%)
Query: 298 GADPYQCDICRKTFIRKEDLTRHCLLHTGV 327
G PY C C K F K L H +HTGV
Sbjct: 7 GEKPYVCSDCGKAFTFKSQLIVHQGIHTGV 36
Score = 29.6 bits (65), Expect = 6.6, Method: Composition-based stats.
Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 155 TGERPYECKEVCGRVFNRKDNLREHLRAHAG 185
+GE+PY C + CG+ F K L H H G
Sbjct: 6 SGEKPYVCSD-CGKAFTFKSQLIVHQGIHTG 35
>pdb|2YTS|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
715- 747) Of Human Zinc Finger Protein 484
Length = 46
Score = 37.0 bits (84), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 20/29 (68%)
Query: 301 PYQCDICRKTFIRKEDLTRHCLLHTGVKP 329
PY C+ C K+FI+K L RH +HTG KP
Sbjct: 12 PYICNECGKSFIQKSHLNRHRRIHTGEKP 40
Score = 33.9 bits (76), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 18/28 (64%)
Query: 243 KPHVCEYCEKAFIQASQLKAHMFHHTGE 270
KP++C C K+FIQ S L H HTGE
Sbjct: 11 KPYICNECGKSFIQKSHLNRHRRIHTGE 38
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Query: 157 ERPYECKEVCGRVFNRKDNLREHLRAHAGE 186
E+PY C E CG+ F +K +L H R H GE
Sbjct: 10 EKPYICNE-CGKSFIQKSHLNRHRRIHTGE 38
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 129 EKLYECDICKNRFPSSGAMKKHRRKHTGERP 159
EK Y C+ C F + +HRR HTGE+P
Sbjct: 10 EKPYICNECGKSFIQKSHLNRHRRIHTGEKP 40
>pdb|2EN9|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
415- 447) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 36.6 bits (83), Expect = 0.053, Method: Composition-based stats.
Identities = 14/31 (45%), Positives = 22/31 (70%)
Query: 129 EKLYECDICKNRFPSSGAMKKHRRKHTGERP 159
+KL++C+ CK F S ++ H+R HTGE+P
Sbjct: 10 KKLFKCNECKKTFTQSSSLTVHQRIHTGEKP 40
Score = 32.7 bits (73), Expect = 0.76, Method: Composition-based stats.
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 302 YQCDICRKTFIRKEDLTRHCLLHTGVKP 329
++C+ C+KTF + LT H +HTG KP
Sbjct: 13 FKCNECKKTFTQSSSLTVHQRIHTGEKP 40
Score = 30.4 bits (67), Expect = 4.1, Method: Composition-based stats.
Identities = 15/30 (50%), Positives = 16/30 (53%)
Query: 328 KPHKCPICTKGFTMKSSLKIHLLTHTKEPP 357
K KC C K FT SSL +H HT E P
Sbjct: 11 KLFKCNECKKTFTQSSSLTVHQRIHTGEKP 40
>pdb|2YRJ|A Chain A, Solution Structure Of The C2h2-Type Zinc Finger Domain
(781- 813) From Zinc Finger Protein 473
Length = 46
Score = 36.6 bits (83), Expect = 0.055, Method: Composition-based stats.
Identities = 16/30 (53%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Query: 157 ERPYECKEVCGRVFNRKDNLREHLRAHAGE 186
E+PY C E CG+ F +K NL +H R H GE
Sbjct: 10 EKPYRCGE-CGKAFAQKANLTQHQRIHTGE 38
Score = 35.8 bits (81), Expect = 0.096, Method: Composition-based stats.
Identities = 15/29 (51%), Positives = 20/29 (68%)
Query: 301 PYQCDICRKTFIRKEDLTRHCLLHTGVKP 329
PY+C C K F +K +LT+H +HTG KP
Sbjct: 12 PYRCGECGKAFAQKANLTQHQRIHTGEKP 40
Score = 32.3 bits (72), Expect = 1.0, Method: Composition-based stats.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 129 EKLYECDICKNRFPSSGAMKKHRRKHTGERP 159
EK Y C C F + +H+R HTGE+P
Sbjct: 10 EKPYRCGECGKAFAQKANLTQHQRIHTGEKP 40
Score = 30.4 bits (67), Expect = 3.9, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 328 KPHKCPICTKGFTMKSSLKIHLLTHTKEPP 357
KP++C C K F K++L H HT E P
Sbjct: 11 KPYRCGECGKAFAQKANLTQHQRIHTGEKP 40
Score = 30.4 bits (67), Expect = 4.2, Method: Composition-based stats.
Identities = 14/28 (50%), Positives = 16/28 (57%)
Query: 243 KPHVCEYCEKAFIQASQLKAHMFHHTGE 270
KP+ C C KAF Q + L H HTGE
Sbjct: 11 KPYRCGECGKAFAQKANLTQHQRIHTGE 38
>pdb|1UN6|B Chain B, The Crystal Structure Of A Zinc Finger - Rna Complex
Reveals Two Modes Of Molecular Recognition
pdb|1UN6|C Chain C, The Crystal Structure Of A Zinc Finger - Rna Complex
Reveals Two Modes Of Molecular Recognition
pdb|1UN6|D Chain D, The Crystal Structure Of A Zinc Finger - Rna Complex
Reveals Two Modes Of Molecular Recognition
pdb|2HGH|A Chain A, Transcription Factor Iiia Zinc Fingers 4-6 Bound To 5s
Rrna 55mer (Nmr Structure)
Length = 87
Score = 36.6 bits (83), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 39/69 (56%), Gaps = 5/69 (7%)
Query: 248 EYCEKAFIQASQLKAHMFHHTGENGHTC--ELCNKTFNRKARLELHMKYIHEGADPYQCD 305
E C KAF + +QLK H F HT + + C E C+K F+ +RL+ H K +H G + D
Sbjct: 7 ENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEK-VHAGYPCKKDD 65
Query: 306 ICRKTFIRK 314
C +F+ K
Sbjct: 66 SC--SFVGK 72
Score = 34.7 bits (78), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
Query: 131 LYECDI--CKNRFPSSGAMKKHRRKHTGERPYECK-EVCGRVFNRKDNLREHLRAHAG 185
+Y C C F +K H+ HT + PYEC E C + F+ L+ H + HAG
Sbjct: 1 MYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG 58
Score = 33.1 bits (74), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 30/67 (44%), Gaps = 5/67 (7%)
Query: 307 CRKTFIRKEDLTRHCLLHTGVKPHKCPI--CTKGFTMKSSLKIHLLTHTKEPPK---SCE 361
C K F + L H HT P++CP C K F++ S LK H H P K SC
Sbjct: 9 CGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCS 68
Query: 362 VCGRAFI 368
G+ +
Sbjct: 69 FVGKTWT 75
>pdb|2EQ0|A Chain A, Solution Structure Of The 8th C2h2 Type Zinc Finger Domain
Of Zinc Finger Protein 347
Length = 46
Score = 36.6 bits (83), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 18/29 (62%)
Query: 301 PYQCDICRKTFIRKEDLTRHCLLHTGVKP 329
PY+C C K F R L RH L+HTG KP
Sbjct: 12 PYKCHECGKVFRRNSHLARHQLIHTGEKP 40
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Query: 157 ERPYECKEVCGRVFNRKDNLREHLRAHAGE 186
E+PY+C E CG+VF R +L H H GE
Sbjct: 10 EKPYKCHE-CGKVFRRNSHLARHQLIHTGE 38
>pdb|2EP0|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
528- 560) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 36.6 bits (83), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 19/29 (65%)
Query: 301 PYQCDICRKTFIRKEDLTRHCLLHTGVKP 329
PY+CD+C K+F LT H +HTG KP
Sbjct: 12 PYKCDVCHKSFRYGSSLTVHQRIHTGEKP 40
Score = 35.0 bits (79), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 129 EKLYECDICKNRFPSSGAMKKHRRKHTGERP 159
EK Y+CD+C F ++ H+R HTGE+P
Sbjct: 10 EKPYKCDVCHKSFRYGSSLTVHQRIHTGEKP 40
Score = 33.1 bits (74), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 18/30 (60%)
Query: 328 KPHKCPICTKGFTMKSSLKIHLLTHTKEPP 357
KP+KC +C K F SSL +H HT E P
Sbjct: 11 KPYKCDVCHKSFRYGSSLTVHQRIHTGEKP 40
Score = 29.3 bits (64), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 243 KPHVCEYCEKAFIQASQLKAHMFHHTGEN 271
KP+ C+ C K+F S L H HTGE
Sbjct: 11 KPYKCDVCHKSFRYGSSLTVHQRIHTGEK 39
>pdb|3RIB|A Chain A, Human Lysine Methyltransferase Smyd2 In Complex With
Adohcy
pdb|3RIB|B Chain B, Human Lysine Methyltransferase Smyd2 In Complex With
Adohcy
Length = 441
Score = 36.6 bits (83), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 427 LLRCSKCKVTFYCSKQHQTLDWKAHKINCN 456
L +C +CK FYC+ + Q DW HK+ C+
Sbjct: 62 LSKCGRCKQAFYCNVECQKEDWPMHKLECS 91
>pdb|2EM3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
640- 672) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 36.6 bits (83), Expect = 0.064, Method: Composition-based stats.
Identities = 15/30 (50%), Positives = 20/30 (66%)
Query: 328 KPHKCPICTKGFTMKSSLKIHLLTHTKEPP 357
KP++C +C+K FT K+ L H THT E P
Sbjct: 11 KPYECKVCSKAFTQKAHLAQHQKTHTGEKP 40
Score = 36.2 bits (82), Expect = 0.077, Method: Composition-based stats.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 129 EKLYECDICKNRFPSSGAMKKHRRKHTGERP 159
EK YEC +C F + +H++ HTGE+P
Sbjct: 10 EKPYECKVCSKAFTQKAHLAQHQKTHTGEKP 40
Score = 35.4 bits (80), Expect = 0.14, Method: Composition-based stats.
Identities = 15/30 (50%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Query: 157 ERPYECKEVCGRVFNRKDNLREHLRAHAGE 186
E+PYECK VC + F +K +L +H + H GE
Sbjct: 10 EKPYECK-VCSKAFTQKAHLAQHQKTHTGE 38
Score = 35.0 bits (79), Expect = 0.16, Method: Composition-based stats.
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 301 PYQCDICRKTFIRKEDLTRHCLLHTGVKP 329
PY+C +C K F +K L +H HTG KP
Sbjct: 12 PYECKVCSKAFTQKAHLAQHQKTHTGEKP 40
Score = 33.1 bits (74), Expect = 0.67, Method: Composition-based stats.
Identities = 14/28 (50%), Positives = 17/28 (60%)
Query: 243 KPHVCEYCEKAFIQASQLKAHMFHHTGE 270
KP+ C+ C KAF Q + L H HTGE
Sbjct: 11 KPYECKVCSKAFTQKAHLAQHQKTHTGE 38
>pdb|3S7B|A Chain A, Structural Basis Of Substrate Methylation And Inhibition
Of Smyd2
pdb|3S7D|A Chain A, Structural Basis Of Substrate Methylation And Inhibition
Of Smyd2
pdb|3S7F|A Chain A, Structural Basis Of Substrate Methylation And Inhibition
Of Smyd2
pdb|3S7J|A Chain A, Structural Basis Of Substrate Methylation And Inhibition
Of Smyd2
Length = 433
Score = 36.6 bits (83), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 427 LLRCSKCKVTFYCSKQHQTLDWKAHKINCN 456
L +C +CK FYC+ + Q DW HK+ C+
Sbjct: 62 LSKCGRCKQAFYCNVECQKEDWPMHKLECS 91
>pdb|3TG4|A Chain A, Structure Of Smyd2 In Complex With Sam
pdb|3TG5|A Chain A, Structure Of Smyd2 In Complex With P53 And Sah
Length = 433
Score = 36.6 bits (83), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 427 LLRCSKCKVTFYCSKQHQTLDWKAHKINCN 456
L +C +CK FYC+ + Q DW HK+ C+
Sbjct: 62 LSKCGRCKQAFYCNVECQKEDWPMHKLECS 91
>pdb|2J7J|A Chain A, Invariance Of The Zinc Finger Module: A Comparison Of The
Free Structure With Those In Nucleic-Acid Complexes
Length = 85
Score = 36.6 bits (83), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 39/69 (56%), Gaps = 5/69 (7%)
Query: 248 EYCEKAFIQASQLKAHMFHHTGENGHTC--ELCNKTFNRKARLELHMKYIHEGADPYQCD 305
E C KAF + +QLK H F HT + + C E C+K F+ +RL+ H K +H G + D
Sbjct: 7 ENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEK-VHAGYPCKKDD 65
Query: 306 ICRKTFIRK 314
C +F+ K
Sbjct: 66 SC--SFVGK 72
Score = 34.7 bits (78), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
Query: 131 LYECDI--CKNRFPSSGAMKKHRRKHTGERPYECK-EVCGRVFNRKDNLREHLRAHAG 185
+Y C C F +K H+ HT + PYEC E C + F+ L+ H + HAG
Sbjct: 1 MYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG 58
Score = 32.7 bits (73), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 30/67 (44%), Gaps = 5/67 (7%)
Query: 307 CRKTFIRKEDLTRHCLLHTGVKPHKCPI--CTKGFTMKSSLKIHLLTHTKEPPK---SCE 361
C K F + L H HT P++CP C K F++ S LK H H P K SC
Sbjct: 9 CGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCS 68
Query: 362 VCGRAFI 368
G+ +
Sbjct: 69 FVGKTWT 75
>pdb|2EOW|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
368- 400) Of Human Zinc Finger Protein 347
Length = 46
Score = 36.2 bits (82), Expect = 0.068, Method: Composition-based stats.
Identities = 16/30 (53%), Positives = 19/30 (63%)
Query: 328 KPHKCPICTKGFTMKSSLKIHLLTHTKEPP 357
KP+KC C K F +SSL IH TH+ E P
Sbjct: 11 KPYKCNECGKAFRARSSLAIHQATHSGEKP 40
Score = 31.2 bits (69), Expect = 2.3, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Query: 157 ERPYECKEVCGRVFNRKDNLREHLRAHAGE 186
E+PY+C E CG+ F + +L H H+GE
Sbjct: 10 EKPYKCNE-CGKAFRARSSLAIHQATHSGE 38
Score = 30.0 bits (66), Expect = 5.6, Method: Composition-based stats.
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 129 EKLYECDICKNRFPSSGAMKKHRRKHTGERP 159
EK Y+C+ C F + ++ H+ H+GE+P
Sbjct: 10 EKPYKCNECGKAFRARSSLAIHQATHSGEKP 40
>pdb|2EM1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
637- 667) Of Human Zinc Finger Protein 268
Length = 44
Score = 36.2 bits (82), Expect = 0.082, Method: Composition-based stats.
Identities = 16/32 (50%), Positives = 18/32 (56%)
Query: 298 GADPYQCDICRKTFIRKEDLTRHCLLHTGVKP 329
G PY C+ C K F K L H +HTGVKP
Sbjct: 7 GEKPYSCNECGKAFTFKSQLIVHKGVHTGVKP 38
Score = 33.5 bits (75), Expect = 0.45, Method: Composition-based stats.
Identities = 15/33 (45%), Positives = 18/33 (54%)
Query: 325 TGVKPHKCPICTKGFTMKSSLKIHLLTHTKEPP 357
+G KP+ C C K FT KS L +H HT P
Sbjct: 6 SGEKPYSCNECGKAFTFKSQLIVHKGVHTGVKP 38
Score = 32.7 bits (73), Expect = 0.81, Method: Composition-based stats.
Identities = 16/30 (53%), Positives = 17/30 (56%)
Query: 240 SGVKPHVCEYCEKAFIQASQLKAHMFHHTG 269
SG KP+ C C KAF SQL H HTG
Sbjct: 6 SGEKPYSCNECGKAFTFKSQLIVHKGVHTG 35
Score = 32.0 bits (71), Expect = 1.4, Method: Composition-based stats.
Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 155 TGERPYECKEVCGRVFNRKDNLREHLRAHAG 185
+GE+PY C E CG+ F K L H H G
Sbjct: 6 SGEKPYSCNE-CGKAFTFKSQLIVHKGVHTG 35
Score = 29.3 bits (64), Expect = 8.7, Method: Composition-based stats.
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 268 TGENGHTCELCNKTFNRKARLELHMKYIHEGADP 301
+GE ++C C K F K++L +H K +H G P
Sbjct: 6 SGEKPYSCNECGKAFTFKSQLIVH-KGVHTGVKP 38
>pdb|3QWV|A Chain A, Crystal Structure Of Histone Lysine Methyltransferase
Smyd2 In Complex With The Cofactor Product Adohcy
pdb|3QWW|A Chain A, Crystal Structure Of Histone Lysine Methyltransferase
Smyd2 In Complex With The Methyltransferase Inhibitor
Sinefungin
Length = 433
Score = 36.2 bits (82), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 427 LLRCSKCKVTFYCSKQHQTLDWKAHKINCN 456
L +C +CK FYC + Q DW HK+ C+
Sbjct: 62 LSKCGRCKQAFYCDVECQKEDWPLHKLECS 91
>pdb|2EME|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
725- 757) Of Human Zinc Finger Protein 473
Length = 46
Score = 35.8 bits (81), Expect = 0.090, Method: Composition-based stats.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 129 EKLYECDICKNRFPSSGAMKKHRRKHTGERP 159
EK Y CD C F S + +H+R HTGE+P
Sbjct: 10 EKPYVCDYCGKAFGLSAELVRHQRIHTGEKP 40
Score = 35.0 bits (79), Expect = 0.16, Method: Composition-based stats.
Identities = 15/28 (53%), Positives = 20/28 (71%)
Query: 243 KPHVCEYCEKAFIQASQLKAHMFHHTGE 270
KP+VC+YC KAF +++L H HTGE
Sbjct: 11 KPYVCDYCGKAFGLSAELVRHQRIHTGE 38
Score = 35.0 bits (79), Expect = 0.18, Method: Composition-based stats.
Identities = 15/29 (51%), Positives = 17/29 (58%)
Query: 301 PYQCDICRKTFIRKEDLTRHCLLHTGVKP 329
PY CD C K F +L RH +HTG KP
Sbjct: 12 PYVCDYCGKAFGLSAELVRHQRIHTGEKP 40
>pdb|2LVU|A Chain A, Solution Structure Of Miz-1 Zinc Finger 10
Length = 26
Score = 35.8 bits (81), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 15/25 (60%), Positives = 19/25 (76%)
Query: 243 KPHVCEYCEKAFIQASQLKAHMFHH 267
KP+VCE C K F+Q+SQL H+ HH
Sbjct: 1 KPYVCERCGKRFVQSSQLANHIRHH 25
>pdb|2YTK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
396- 428) Of Human Zinc Finger Protein 347
Length = 46
Score = 35.8 bits (81), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Query: 157 ERPYECKEVCGRVFNRKDNLREHLRAHAGE 186
E+PY+C E CG+VF + +L H R H GE
Sbjct: 10 EKPYKCNE-CGKVFTQNSHLTNHWRIHTGE 38
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 301 PYQCDICRKTFIRKEDLTRHCLLHTGVKP 329
PY+C+ C K F + LT H +HTG KP
Sbjct: 12 PYKCNECGKVFTQNSHLTNHWRIHTGEKP 40
Score = 30.0 bits (66), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 129 EKLYECDICKNRFPSSGAMKKHRRKHTGERP 159
EK Y+C+ C F + + H R HTGE+P
Sbjct: 10 EKPYKCNECGKVFTQNSHLTNHWRIHTGEKP 40
Score = 29.6 bits (65), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 15/28 (53%)
Query: 243 KPHVCEYCEKAFIQASQLKAHMFHHTGE 270
KP+ C C K F Q S L H HTGE
Sbjct: 11 KPYKCNECGKVFTQNSHLTNHWRIHTGE 38
>pdb|2YTF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
607- 639) Of Human Zinc Finger Protein 268
Length = 46
Score = 35.4 bits (80), Expect = 0.13, Method: Composition-based stats.
Identities = 16/30 (53%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Query: 157 ERPYECKEVCGRVFNRKDNLREHLRAHAGE 186
E+P+EC E C + FN K NL H R H GE
Sbjct: 10 EKPFECSE-CQKAFNTKSNLIVHQRTHTGE 38
Score = 33.9 bits (76), Expect = 0.35, Method: Composition-based stats.
Identities = 15/30 (50%), Positives = 18/30 (60%)
Query: 328 KPHKCPICTKGFTMKSSLKIHLLTHTKEPP 357
KP +C C K F KS+L +H THT E P
Sbjct: 11 KPFECSECQKAFNTKSNLIVHQRTHTGEKP 40
Score = 33.1 bits (74), Expect = 0.71, Method: Composition-based stats.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 129 EKLYECDICKNRFPSSGAMKKHRRKHTGERP 159
EK +EC C+ F + + H+R HTGE+P
Sbjct: 10 EKPFECSECQKAFNTKSNLIVHQRTHTGEKP 40
Score = 30.8 bits (68), Expect = 3.5, Method: Composition-based stats.
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 301 PYQCDICRKTFIRKEDLTRHCLLHTGVKP 329
P++C C+K F K +L H HTG KP
Sbjct: 12 PFECSECQKAFNTKSNLIVHQRTHTGEKP 40
Score = 29.6 bits (65), Expect = 7.3, Method: Composition-based stats.
Identities = 14/28 (50%), Positives = 15/28 (53%)
Query: 243 KPHVCEYCEKAFIQASQLKAHMFHHTGE 270
KP C C+KAF S L H HTGE
Sbjct: 11 KPFECSECQKAFNTKSNLIVHQRTHTGE 38
>pdb|2EMX|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
273- 303) Of Human Zinc Finger Protein 268
Length = 44
Score = 35.4 bits (80), Expect = 0.14, Method: Composition-based stats.
Identities = 15/33 (45%), Positives = 19/33 (57%)
Query: 325 TGVKPHKCPICTKGFTMKSSLKIHLLTHTKEPP 357
+G KP C C K F+ KS L +H TH +E P
Sbjct: 6 SGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKP 38
Score = 29.3 bits (64), Expect = 8.8, Method: Composition-based stats.
Identities = 15/31 (48%), Positives = 15/31 (48%)
Query: 240 SGVKPHVCEYCEKAFIQASQLKAHMFHHTGE 270
SG KP C CEKAF S L H H E
Sbjct: 6 SGEKPFGCSCCEKAFSSKSYLLVHQQTHAEE 36
>pdb|2EOR|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
255- 287) Of Human Zinc Finger Protein 224
Length = 46
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 17/28 (60%), Positives = 19/28 (67%)
Query: 243 KPHVCEYCEKAFIQASQLKAHMFHHTGE 270
KP+ CE C KAFI SQL+ H HTGE
Sbjct: 11 KPYNCEECGKAFIHDSQLQEHQRIHTGE 38
Score = 33.9 bits (76), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 16/29 (55%)
Query: 301 PYQCDICRKTFIRKEDLTRHCLLHTGVKP 329
PY C+ C K FI L H +HTG KP
Sbjct: 12 PYNCEECGKAFIHDSQLQEHQRIHTGEKP 40
Score = 33.9 bits (76), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Query: 157 ERPYECKEVCGRVFNRKDNLREHLRAHAGE 186
E+PY C+E CG+ F L+EH R H GE
Sbjct: 10 EKPYNCEE-CGKAFIHDSQLQEHQRIHTGE 38
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 129 EKLYECDICKNRFPSSGAMKKHRRKHTGERP 159
EK Y C+ C F +++H+R HTGE+P
Sbjct: 10 EKPYNCEECGKAFIHDSQLQEHQRIHTGEKP 40
>pdb|2EM7|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
339- 371) Of Human Zinc Finger Protein 224
Length = 46
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 20/29 (68%)
Query: 301 PYQCDICRKTFIRKEDLTRHCLLHTGVKP 329
PY+C+ C K FI + DL H ++HTG KP
Sbjct: 12 PYKCEECGKGFICRRDLYTHHMVHTGEKP 40
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 328 KPHKCPICTKGFTMKSSLKIHLLTHTKEPP 357
KP+KC C KGF + L H + HT E P
Sbjct: 11 KPYKCEECGKGFICRRDLYTHHMVHTGEKP 40
>pdb|2EOE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
508- 540) Of Human Zinc Finger Protein 347
Length = 46
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 301 PYQCDICRKTFIRKEDLTRHCLLHTGVKP 329
PY+C+ C K F + L H +HTGVKP
Sbjct: 12 PYKCNECGKVFTQNSHLANHQRIHTGVKP 40
Score = 33.1 bits (74), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Query: 157 ERPYECKEVCGRVFNRKDNLREHLRAHAG 185
E+PY+C E CG+VF + +L H R H G
Sbjct: 10 EKPYKCNE-CGKVFTQNSHLANHQRIHTG 37
>pdb|2EM2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
584- 616) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 35.0 bits (79), Expect = 0.16, Method: Composition-based stats.
Identities = 15/30 (50%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Query: 157 ERPYECKEVCGRVFNRKDNLREHLRAHAGE 186
E+P++CKE CG+ F + +L HLR H GE
Sbjct: 10 EKPFKCKE-CGKAFRQNIHLASHLRIHTGE 38
Score = 29.6 bits (65), Expect = 6.6, Method: Composition-based stats.
Identities = 14/28 (50%), Positives = 17/28 (60%)
Query: 243 KPHVCEYCEKAFIQASQLKAHMFHHTGE 270
KP C+ C KAF Q L +H+ HTGE
Sbjct: 11 KPFKCKECGKAFRQNIHLASHLRIHTGE 38
>pdb|2YTQ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
775- 807) Of Human Zinc Finger Protein 268
Length = 46
Score = 35.0 bits (79), Expect = 0.17, Method: Composition-based stats.
Identities = 15/30 (50%), Positives = 19/30 (63%)
Query: 328 KPHKCPICTKGFTMKSSLKIHLLTHTKEPP 357
KP+ C C K F+ KS L IH+ TH+ E P
Sbjct: 11 KPYGCSECGKAFSSKSYLIIHMRTHSGEKP 40
Score = 35.0 bits (79), Expect = 0.18, Method: Composition-based stats.
Identities = 15/30 (50%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Query: 157 ERPYECKEVCGRVFNRKDNLREHLRAHAGE 186
E+PY C E CG+ F+ K L H+R H+GE
Sbjct: 10 EKPYGCSE-CGKAFSSKSYLIIHMRTHSGE 38
Score = 30.4 bits (67), Expect = 4.2, Method: Composition-based stats.
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 129 EKLYECDICKNRFPSSGAMKKHRRKHTGERP 159
EK Y C C F S + H R H+GE+P
Sbjct: 10 EKPYGCSECGKAFSSKSYLIIHMRTHSGEKP 40
Score = 30.4 bits (67), Expect = 4.5, Method: Composition-based stats.
Identities = 14/28 (50%), Positives = 16/28 (57%)
Query: 243 KPHVCEYCEKAFIQASQLKAHMFHHTGE 270
KP+ C C KAF S L HM H+GE
Sbjct: 11 KPYGCSECGKAFSSKSYLIIHMRTHSGE 38
>pdb|2EQ2|A Chain A, Solution Structure Of The 16th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 35.0 bits (79), Expect = 0.17, Method: Composition-based stats.
Identities = 15/29 (51%), Positives = 18/29 (62%)
Query: 301 PYQCDICRKTFIRKEDLTRHCLLHTGVKP 329
PYQC+ C K F + L RH +HTG KP
Sbjct: 12 PYQCNECGKAFSQTSKLARHQRVHTGEKP 40
Score = 33.1 bits (74), Expect = 0.58, Method: Composition-based stats.
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 130 KLYECDICKNRFPSSGAMKKHRRKHTGERP 159
K Y+C+ C F + + +H+R HTGE+P
Sbjct: 11 KPYQCNECGKAFSQTSKLARHQRVHTGEKP 40
Score = 32.3 bits (72), Expect = 1.0, Method: Composition-based stats.
Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Query: 158 RPYECKEVCGRVFNRKDNLREHLRAHAGE 186
+PY+C E CG+ F++ L H R H GE
Sbjct: 11 KPYQCNE-CGKAFSQTSKLARHQRVHTGE 38
Score = 32.3 bits (72), Expect = 1.2, Method: Composition-based stats.
Identities = 15/28 (53%), Positives = 17/28 (60%)
Query: 243 KPHVCEYCEKAFIQASQLKAHMFHHTGE 270
KP+ C C KAF Q S+L H HTGE
Sbjct: 11 KPYQCNECGKAFSQTSKLARHQRVHTGE 38
Score = 29.6 bits (65), Expect = 7.7, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 328 KPHKCPICTKGFTMKSSLKIHLLTHTKEPP 357
KP++C C K F+ S L H HT E P
Sbjct: 11 KPYQCNECGKAFSQTSKLARHQRVHTGEKP 40
>pdb|1XF7|A Chain A, High Resolution Nmr Structure Of The Wilms' Tumor
Suppressor Protein (Wt1) Finger 3
Length = 29
Score = 35.0 bits (79), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Query: 158 RPYECKEVCGRVFNRKDNLREHLRAHAGE 186
+P++CK C R F+R D+L+ H R H GE
Sbjct: 1 KPFQCK-TCQRKFSRSDHLKTHTRTHTGE 28
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 15/23 (65%)
Query: 76 KVCGRVFNRKDNLREHLRAHAGE 98
K C R F+R D+L+ H R H GE
Sbjct: 6 KTCQRKFSRSDHLKTHTRTHTGE 28
Score = 30.4 bits (67), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 130 KLYECDICKNRFPSSGAMKKHRRKHTGER 158
K ++C C+ +F S +K H R HTGE+
Sbjct: 1 KPFQCKTCQRKFSRSDHLKTHTRTHTGEK 29
Score = 29.6 bits (65), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 301 PYQCDICRKTFIRKEDLTRHCLLHTGVK 328
P+QC C++ F R + L H HTG K
Sbjct: 2 PFQCKTCQRKFSRSDHLKTHTRTHTGEK 29
Score = 29.6 bits (65), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 243 KPHVCEYCEKAFIQASQLKAHMFHHTGEN 271
KP C+ C++ F ++ LK H HTGE
Sbjct: 1 KPFQCKTCQRKFSRSDHLKTHTRTHTGEK 29
>pdb|3OXG|A Chain A, Human Lysine Methyltransferase Smyd3 In Complex With
Adohcy (Form Iii)
Length = 464
Score = 35.0 bits (79), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 426 NLLRCSKCKVTFYCSKQHQTLDWKAHKINCN 456
L+RCS+C+V YCS + Q W HK C
Sbjct: 94 KLMRCSQCRVAKYCSAKCQKKAWPDHKRECK 124
>pdb|2LVT|A Chain A, Solution Structure Of Miz-1 Zinc Finger 9
Length = 29
Score = 34.7 bits (78), Expect = 0.20, Method: Composition-based stats.
Identities = 17/28 (60%), Positives = 18/28 (64%)
Query: 243 KPHVCEYCEKAFIQASQLKAHMFHHTGE 270
KP C C KAF QAS L AH+ HTGE
Sbjct: 1 KPCQCVMCGKAFTQASSLIAHVRQHTGE 28
Score = 30.4 bits (67), Expect = 4.1, Method: Composition-based stats.
Identities = 14/28 (50%), Positives = 17/28 (60%)
Query: 328 KPHKCPICTKGFTMKSSLKIHLLTHTKE 355
KP +C +C K FT SSL H+ HT E
Sbjct: 1 KPCQCVMCGKAFTQASSLIAHVRQHTGE 28
>pdb|2YTB|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 5 In
Zinc Finger Protein 32
Length = 42
Score = 34.7 bits (78), Expect = 0.21, Method: Composition-based stats.
Identities = 14/32 (43%), Positives = 19/32 (59%)
Query: 328 KPHKCPICTKGFTMKSSLKIHLLTHTKEPPKS 359
KP++C C K F+ K SL +H+ HT P S
Sbjct: 10 KPYRCDQCGKAFSQKGSLIVHIRVHTGSGPSS 41
Score = 33.1 bits (74), Expect = 0.68, Method: Composition-based stats.
Identities = 13/29 (44%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Query: 157 ERPYECKEVCGRVFNRKDNLREHLRAHAG 185
E+PY C + CG+ F++K +L H+R H G
Sbjct: 9 EKPYRCDQ-CGKAFSQKGSLIVHIRVHTG 36
Score = 32.7 bits (73), Expect = 0.83, Method: Composition-based stats.
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 301 PYQCDICRKTFIRKEDLTRHCLLHTGVKP 329
PY+CD C K F +K L H +HTG P
Sbjct: 11 PYRCDQCGKAFSQKGSLIVHIRVHTGSGP 39
Score = 32.0 bits (71), Expect = 1.6, Method: Composition-based stats.
Identities = 14/31 (45%), Positives = 16/31 (51%)
Query: 129 EKLYECDICKNRFPSSGAMKKHRRKHTGERP 159
EK Y CD C F G++ H R HTG P
Sbjct: 9 EKPYRCDQCGKAFSQKGSLIVHIRVHTGSGP 39
Score = 29.6 bits (65), Expect = 6.6, Method: Composition-based stats.
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 243 KPHVCEYCEKAFIQASQLKAHMFHHTG 269
KP+ C+ C KAF Q L H+ HTG
Sbjct: 10 KPYRCDQCGKAFSQKGSLIVHIRVHTG 36
>pdb|2YTO|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
659- 691) Of Human Zinc Finger Protein 484
Length = 46
Score = 34.7 bits (78), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 16/28 (57%), Positives = 18/28 (64%)
Query: 328 KPHKCPICTKGFTMKSSLKIHLLTHTKE 355
KP+KC C K FT KS L IH +HT E
Sbjct: 11 KPYKCSDCGKAFTRKSGLHIHQQSHTGE 38
Score = 34.3 bits (77), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Query: 157 ERPYECKEVCGRVFNRKDNLREHLRAHAGE 186
E+PY+C + CG+ F RK L H ++H GE
Sbjct: 10 EKPYKCSD-CGKAFTRKSGLHIHQQSHTGE 38
Score = 29.3 bits (64), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 16/28 (57%)
Query: 243 KPHVCEYCEKAFIQASQLKAHMFHHTGE 270
KP+ C C KAF + S L H HTGE
Sbjct: 11 KPYKCSDCGKAFTRKSGLHIHQQSHTGE 38
Score = 29.3 bits (64), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 14/26 (53%)
Query: 301 PYQCDICRKTFIRKEDLTRHCLLHTG 326
PY+C C K F RK L H HTG
Sbjct: 12 PYKCSDCGKAFTRKSGLHIHQQSHTG 37
>pdb|3RU0|A Chain A, Cocrystal Structure Of Human Smyd3 With Inhibitor
Sinefungin Bound
pdb|3RU0|B Chain B, Cocrystal Structure Of Human Smyd3 With Inhibitor
Sinefungin Bound
Length = 438
Score = 34.7 bits (78), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 426 NLLRCSKCKVTFYCSKQHQTLDWKAHKINCN 456
L+RCS+C+V YCS + Q W HK C
Sbjct: 60 KLMRCSQCRVAKYCSAKCQKKAWPDHKRECK 90
>pdb|2EP1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
435- 467) Of Human Zinc Finger Protein 484
Length = 46
Score = 34.7 bits (78), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 19/29 (65%)
Query: 243 KPHVCEYCEKAFIQASQLKAHMFHHTGEN 271
KP+ C C K+FI+ SQL H HTGEN
Sbjct: 11 KPYECSDCGKSFIKKSQLHVHQRIHTGEN 39
Score = 33.9 bits (76), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 301 PYQCDICRKTFIRKEDLTRHCLLHTGVKP 329
PY+C C K+FI+K L H +HTG P
Sbjct: 12 PYECSDCGKSFIKKSQLHVHQRIHTGENP 40
Score = 33.9 bits (76), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Query: 157 ERPYECKEVCGRVFNRKDNLREHLRAHAGE 186
E+PYEC + CG+ F +K L H R H GE
Sbjct: 10 EKPYECSD-CGKSFIKKSQLHVHQRIHTGE 38
Score = 30.4 bits (67), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 16/31 (51%)
Query: 129 EKLYECDICKNRFPSSGAMKKHRRKHTGERP 159
EK YEC C F + H+R HTGE P
Sbjct: 10 EKPYECSDCGKSFIKKSQLHVHQRIHTGENP 40
Score = 30.0 bits (66), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 328 KPHKCPICTKGFTMKSSLKIHLLTHTKEPP 357
KP++C C K F KS L +H HT E P
Sbjct: 11 KPYECSDCGKSFIKKSQLHVHQRIHTGENP 40
>pdb|3OXF|A Chain A, Human Lysine Methyltransferase Smyd3 In Complex With
Adohcy (Form I)
pdb|3OXF|B Chain B, Human Lysine Methyltransferase Smyd3 In Complex With
Adohcy (Form I)
Length = 436
Score = 34.7 bits (78), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 426 NLLRCSKCKVTFYCSKQHQTLDWKAHKINCN 456
L+RCS+C+V YCS + Q W HK C
Sbjct: 58 KLMRCSQCRVAKYCSAKCQKKAWPDHKRECK 88
>pdb|3QWP|A Chain A, Crystal Structure Of Set And Mynd Domain Containing 3;
Zinc Finger Mynd Domain-Containing Protein 1
Length = 429
Score = 34.7 bits (78), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 427 LLRCSKCKVTFYCSKQHQTLDWKAHKINC 455
L+RCS+C+V YCS + Q W HK C
Sbjct: 60 LMRCSQCRVAKYCSAKCQKKAWPDHKREC 88
>pdb|3PDN|A Chain A, Crystal Structure Of Smyd3 In Complex With
Methyltransferase Inhibitor Sinefungin
pdb|3OXL|A Chain A, Human Lysine Methyltransferase Smyd3 In Complex With
Adohcy (Form Ii)
Length = 428
Score = 34.7 bits (78), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 426 NLLRCSKCKVTFYCSKQHQTLDWKAHKINCN 456
L+RCS+C+V YCS + Q W HK C
Sbjct: 58 KLMRCSQCRVAKYCSAKCQKKAWPDHKRECK 88
>pdb|2EQ1|A Chain A, Solution Structure Of The 9th C2h2 Type Zinc Finger Domain
Of Zinc Finger Protein 347
Length = 46
Score = 34.7 bits (78), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 19/29 (65%)
Query: 301 PYQCDICRKTFIRKEDLTRHCLLHTGVKP 329
PY+C+ C K F +LT H ++HTG KP
Sbjct: 12 PYKCNECGKAFRAHSNLTTHQVIHTGEKP 40
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Query: 157 ERPYECKEVCGRVFNRKDNLREHLRAHAGE 186
E+PY+C E CG+ F NL H H GE
Sbjct: 10 EKPYKCNE-CGKAFRAHSNLTTHQVIHTGE 38
Score = 29.6 bits (65), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 328 KPHKCPICTKGFTMKSSLKIHLLTHTKEPP 357
KP+KC C K F S+L H + HT E P
Sbjct: 11 KPYKCNECGKAFRAHSNLTTHQVIHTGEKP 40
>pdb|2EMP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
536- 568) Of Human Zinc Finger Protein 347
Length = 46
Score = 34.7 bits (78), Expect = 0.24, Method: Composition-based stats.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 327 VKPHKCPICTKGFTMKSSLKIHLLTHTKEPP 357
VKP+ C C K F++ SSL H + HT E P
Sbjct: 10 VKPYMCNECGKAFSVYSSLTTHQVIHTGEKP 40
Score = 33.1 bits (74), Expect = 0.60, Method: Composition-based stats.
Identities = 15/29 (51%), Positives = 17/29 (58%)
Query: 242 VKPHVCEYCEKAFIQASQLKAHMFHHTGE 270
VKP++C C KAF S L H HTGE
Sbjct: 10 VKPYMCNECGKAFSVYSSLTTHQVIHTGE 38
Score = 33.1 bits (74), Expect = 0.65, Method: Composition-based stats.
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 301 PYQCDICRKTFIRKEDLTRHCLLHTGVKP 329
PY C+ C K F LT H ++HTG KP
Sbjct: 12 PYMCNECGKAFSVYSSLTTHQVIHTGEKP 40
>pdb|2YTR|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
760- 792) Of Human Zinc Finger Protein 347
Length = 46
Score = 34.7 bits (78), Expect = 0.24, Method: Composition-based stats.
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 129 EKLYECDICKNRFPSSGAMKKHRRKHTGERP 159
EK Y+C+ C F + + +H+R HTGE+P
Sbjct: 10 EKPYKCNECGKAFSQTSKLARHQRIHTGEKP 40
Score = 33.9 bits (76), Expect = 0.43, Method: Composition-based stats.
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 301 PYQCDICRKTFIRKEDLTRHCLLHTGVKP 329
PY+C+ C K F + L RH +HTG KP
Sbjct: 12 PYKCNECGKAFSQTSKLARHQRIHTGEKP 40
Score = 33.5 bits (75), Expect = 0.51, Method: Composition-based stats.
Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Query: 157 ERPYECKEVCGRVFNRKDNLREHLRAHAGE 186
E+PY+C E CG+ F++ L H R H GE
Sbjct: 10 EKPYKCNE-CGKAFSQTSKLARHQRIHTGE 38
Score = 32.0 bits (71), Expect = 1.3, Method: Composition-based stats.
Identities = 15/28 (53%), Positives = 17/28 (60%)
Query: 243 KPHVCEYCEKAFIQASQLKAHMFHHTGE 270
KP+ C C KAF Q S+L H HTGE
Sbjct: 11 KPYKCNECGKAFSQTSKLARHQRIHTGE 38
Score = 30.4 bits (67), Expect = 4.0, Method: Composition-based stats.
Identities = 14/30 (46%), Positives = 16/30 (53%)
Query: 328 KPHKCPICTKGFTMKSSLKIHLLTHTKEPP 357
KP+KC C K F+ S L H HT E P
Sbjct: 11 KPYKCNECGKAFSQTSKLARHQRIHTGEKP 40
>pdb|2EMW|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
301- 331) Of Human Zinc Finger Protein 268
Length = 44
Score = 34.7 bits (78), Expect = 0.25, Method: Composition-based stats.
Identities = 16/32 (50%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 155 TGERPYECKEVCGRVFNRKDNLREHLRAHAGE 186
+GE+PY C E CG+ F+ K L H R H GE
Sbjct: 6 SGEKPYGCNE-CGKDFSSKSYLIVHQRIHTGE 36
Score = 30.4 bits (67), Expect = 4.2, Method: Composition-based stats.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 325 TGVKPHKCPICTKGFTMKSSLKIHLLTHTKE 355
+G KP+ C C K F+ KS L +H HT E
Sbjct: 6 SGEKPYGCNECGKDFSSKSYLIVHQRIHTGE 36
Score = 29.6 bits (65), Expect = 6.3, Method: Composition-based stats.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 128 AEKLYECDICKNRFPSSGAMKKHRRKHTGER 158
EK Y C+ C F S + H+R HTGE+
Sbjct: 7 GEKPYGCNECGKDFSSKSYLIVHQRIHTGEK 37
Score = 29.6 bits (65), Expect = 6.4, Method: Composition-based stats.
Identities = 15/31 (48%), Positives = 16/31 (51%)
Query: 240 SGVKPHVCEYCEKAFIQASQLKAHMFHHTGE 270
SG KP+ C C K F S L H HTGE
Sbjct: 6 SGEKPYGCNECGKDFSSKSYLIVHQRIHTGE 36
>pdb|2YTI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
564- 596) Of Human Zinc Finger Protein 347
Length = 46
Score = 34.3 bits (77), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 301 PYQCDICRKTFIRKEDLTRHCLLHTGVKP 329
PY+C+ C K F + L RH +HTG KP
Sbjct: 12 PYKCNECGKVFTQNSHLARHRGIHTGEKP 40
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Query: 157 ERPYECKEVCGRVFNRKDNLREHLRAHAGE 186
E+PY+C E CG+VF + +L H H GE
Sbjct: 10 EKPYKCNE-CGKVFTQNSHLARHRGIHTGE 38
Score = 30.4 bits (67), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 129 EKLYECDICKNRFPSSGAMKKHRRKHTGERP 159
EK Y+C+ C F + + +HR HTGE+P
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHRGIHTGEKP 40
>pdb|2ELZ|A Chain A, Solution Structure Of The 17th Zf-C2h2 Domain From Human
Zinc Finger Protein 224
Length = 46
Score = 34.3 bits (77), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Query: 157 ERPYECKEVCGRVFNRKDNLREHLRAHAGE 186
E+PY+C E CG+ +NR+ NL H R H GE
Sbjct: 10 EKPYKC-EDCGKGYNRRLNLDMHQRVHMGE 38
>pdb|2EM4|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
724- 756) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 34.3 bits (77), Expect = 0.27, Method: Composition-based stats.
Identities = 16/30 (53%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Query: 157 ERPYECKEVCGRVFNRKDNLREHLRAHAGE 186
+RPYEC E CG+ F K +L H R+H GE
Sbjct: 10 QRPYECIE-CGKAFKTKSSLICHRRSHTGE 38
Score = 32.7 bits (73), Expect = 0.75, Method: Composition-based stats.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 129 EKLYECDICKNRFPSSGAMKKHRRKHTGERP 159
++ YEC C F + ++ HRR HTGE+P
Sbjct: 10 QRPYECIECGKAFKTKSSLICHRRSHTGEKP 40
Score = 31.2 bits (69), Expect = 2.4, Method: Composition-based stats.
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 328 KPHKCPICTKGFTMKSSLKIHLLTHTKEPP 357
+P++C C K F KSSL H +HT E P
Sbjct: 11 RPYECIECGKAFKTKSSLICHRRSHTGEKP 40
>pdb|2YU8|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
648- 680) Of Human Zinc Finger Protein 347
Length = 46
Score = 34.3 bits (77), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 301 PYQCDICRKTFIRKEDLTRHCLLHTGVKP 329
PY+C+ C K F + L RH +HTG KP
Sbjct: 12 PYKCNECGKVFTQNSHLARHRRVHTGGKP 40
Score = 32.7 bits (73), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Query: 157 ERPYECKEVCGRVFNRKDNLREHLRAHAG 185
E+PY+C E CG+VF + +L H R H G
Sbjct: 10 EKPYKCNE-CGKVFTQNSHLARHRRVHTG 37
Score = 30.8 bits (68), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 129 EKLYECDICKNRFPSSGAMKKHRRKHTGERP 159
EK Y+C+ C F + + +HRR HTG +P
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHRRVHTGGKP 40
>pdb|2YTN|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
732- 764) Of Human Zinc Finger Protein 347
Length = 46
Score = 34.3 bits (77), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 301 PYQCDICRKTFIRKEDLTRHCLLHTGVKP 329
PY+C+ C K F + L RH +HTG KP
Sbjct: 12 PYKCNECGKVFTQNSHLARHRGIHTGEKP 40
Score = 30.0 bits (66), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Query: 157 ERPYECKEVCGRVFNRKDNLREHLRAHAGE 186
++PY+C E CG+VF + +L H H GE
Sbjct: 10 KKPYKCNE-CGKVFTQNSHLARHRGIHTGE 38
Score = 29.3 bits (64), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 15/28 (53%)
Query: 243 KPHVCEYCEKAFIQASQLKAHMFHHTGE 270
KP+ C C K F Q S L H HTGE
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRGIHTGE 38
>pdb|2EN2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
598- 626) Of Human B-Cell Lymphoma 6 Protein
Length = 42
Score = 34.3 bits (77), Expect = 0.28, Method: Composition-based stats.
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 243 KPHVCEYCEKAFIQASQLKAHMFHHTG 269
KP+ CE C F+Q + L+AH+ HTG
Sbjct: 10 KPYKCETCGARFVQVAHLRAHVLIHTG 36
Score = 32.0 bits (71), Expect = 1.5, Method: Composition-based stats.
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 301 PYQCDICRKTFIRKEDLTRHCLLHTGVKP 329
PY+C+ C F++ L H L+HTG P
Sbjct: 11 PYKCETCGARFVQVAHLRAHVLIHTGSGP 39
Score = 31.2 bits (69), Expect = 2.5, Method: Composition-based stats.
Identities = 13/32 (40%), Positives = 17/32 (53%)
Query: 328 KPHKCPICTKGFTMKSSLKIHLLTHTKEPPKS 359
KP+KC C F + L+ H+L HT P S
Sbjct: 10 KPYKCETCGARFVQVAHLRAHVLIHTGSGPSS 41
>pdb|2EQ3|A Chain A, Solution Structure Of The 17th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 34.3 bits (77), Expect = 0.29, Method: Composition-based stats.
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 301 PYQCDICRKTFIRKEDLTRHCLLHTGVKP 329
PY+C+ C K F + LT H +HTG KP
Sbjct: 12 PYECNQCGKAFSVRSSLTTHQAIHTGKKP 40
Score = 32.3 bits (72), Expect = 1.0, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 328 KPHKCPICTKGFTMKSSLKIHLLTHTKEPP 357
KP++C C K F+++SSL H HT + P
Sbjct: 11 KPYECNQCGKAFSVRSSLTTHQAIHTGKKP 40
Score = 30.8 bits (68), Expect = 3.0, Method: Composition-based stats.
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 129 EKLYECDICKNRFPSSGAMKKHRRKHTGERP 159
EK YEC+ C F ++ H+ HTG++P
Sbjct: 10 EKPYECNQCGKAFSVRSSLTTHQAIHTGKKP 40
Score = 30.4 bits (67), Expect = 4.8, Method: Composition-based stats.
Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Query: 157 ERPYECKEVCGRVFNRKDNLREHLRAHAGE 186
E+PYEC + CG+ F+ + +L H H G+
Sbjct: 10 EKPYECNQ-CGKAFSVRSSLTTHQAIHTGK 38
>pdb|2ELY|A Chain A, Solution Structure Of The Third Zf-C2h2 Domain From Human
Zinc Finger Protein 224
Length = 46
Score = 34.3 bits (77), Expect = 0.29, Method: Composition-based stats.
Identities = 15/30 (50%), Positives = 19/30 (63%)
Query: 328 KPHKCPICTKGFTMKSSLKIHLLTHTKEPP 357
KP KC C KGF+ +S+L +H HT E P
Sbjct: 11 KPFKCVECGKGFSRRSALNVHHKLHTGEKP 40
Score = 30.4 bits (67), Expect = 4.6, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Query: 157 ERPYECKEVCGRVFNRKDNLREHLRAHAGE 186
E+P++C E CG+ F+R+ L H + H GE
Sbjct: 10 EKPFKCVE-CGKGFSRRSALNVHHKLHTGE 38
Score = 30.0 bits (66), Expect = 5.1, Method: Composition-based stats.
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 301 PYQCDICRKTFIRKEDLTRHCLLHTGVKP 329
P++C C K F R+ L H LHTG KP
Sbjct: 12 PFKCVECGKGFSRRSALNVHHKLHTGEKP 40
>pdb|2EOV|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
519- 551) Of Human Zinc Finger Protein 484
Length = 46
Score = 34.3 bits (77), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 16/28 (57%), Positives = 18/28 (64%)
Query: 328 KPHKCPICTKGFTMKSSLKIHLLTHTKE 355
KP+KC C K FT KS L+IH HT E
Sbjct: 11 KPYKCSDCGKSFTWKSRLRIHQKCHTGE 38
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Query: 157 ERPYECKEVCGRVFNRKDNLREHLRAHAGE 186
E+PY+C + CG+ F K LR H + H GE
Sbjct: 10 EKPYKCSD-CGKSFTWKSRLRIHQKCHTGE 38
Score = 29.3 bits (64), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 243 KPHVCEYCEKAFIQASQLKAHMFHHTGE 270
KP+ C C K+F S+L+ H HTGE
Sbjct: 11 KPYKCSDCGKSFTWKSRLRIHQKCHTGE 38
>pdb|2EN6|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
887- 919) Of Human Zinc Finger Protein 268
Length = 46
Score = 34.3 bits (77), Expect = 0.32, Method: Composition-based stats.
Identities = 15/30 (50%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Query: 157 ERPYECKEVCGRVFNRKDNLREHLRAHAGE 186
E+PY C E CG+ F++K L H R H GE
Sbjct: 10 EKPYGCNE-CGKTFSQKSILSAHQRTHTGE 38
Score = 33.1 bits (74), Expect = 0.71, Method: Composition-based stats.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 129 EKLYECDICKNRFPSSGAMKKHRRKHTGERP 159
EK Y C+ C F + H+R HTGE+P
Sbjct: 10 EKPYGCNECGKTFSQKSILSAHQRTHTGEKP 40
Score = 32.7 bits (73), Expect = 0.92, Method: Composition-based stats.
Identities = 15/29 (51%), Positives = 18/29 (62%)
Query: 301 PYQCDICRKTFIRKEDLTRHCLLHTGVKP 329
PY C+ C KTF +K L+ H HTG KP
Sbjct: 12 PYGCNECGKTFSQKSILSAHQRTHTGEKP 40
Score = 32.0 bits (71), Expect = 1.5, Method: Composition-based stats.
Identities = 15/30 (50%), Positives = 17/30 (56%)
Query: 328 KPHKCPICTKGFTMKSSLKIHLLTHTKEPP 357
KP+ C C K F+ KS L H THT E P
Sbjct: 11 KPYGCNECGKTFSQKSILSAHQRTHTGEKP 40
Score = 31.6 bits (70), Expect = 1.8, Method: Composition-based stats.
Identities = 15/28 (53%), Positives = 16/28 (57%)
Query: 243 KPHVCEYCEKAFIQASQLKAHMFHHTGE 270
KP+ C C K F Q S L AH HTGE
Sbjct: 11 KPYGCNECGKTFSQKSILSAHQRTHTGE 38
>pdb|2ENF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
340- 372) Of Human Zinc Finger Protein 347
Length = 46
Score = 34.3 bits (77), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 301 PYQCDICRKTFIRKEDLTRHCLLHTGVKP 329
PY+C+ C K F + L RH +HTG KP
Sbjct: 12 PYKCNECGKVFTQNSHLVRHRGIHTGEKP 40
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Query: 157 ERPYECKEVCGRVFNRKDNLREHLRAHAGE 186
E+PY+C E CG+VF + +L H H GE
Sbjct: 10 EKPYKCNE-CGKVFTQNSHLVRHRGIHTGE 38
Score = 29.6 bits (65), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 129 EKLYECDICKNRFPSSGAMKKHRRKHTGERP 159
EK Y+C+ C F + + +HR HTGE+P
Sbjct: 10 EKPYKCNECGKVFTQNSHLVRHRGIHTGEKP 40
>pdb|2YTD|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
426- 458) Of Human Zinc Finger Protein 473
Length = 46
Score = 33.9 bits (76), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Query: 157 ERPYECKEVCGRVFNRKDNLREHLRAHAG 185
E+PY+C E CG+ F+R +L EH R H G
Sbjct: 10 EKPYKCSE-CGKAFHRHTHLNEHRRIHTG 37
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 301 PYQCDICRKTFIRKEDLTRHCLLHTGVKP 329
PY+C C K F R L H +HTG +P
Sbjct: 12 PYKCSECGKAFHRHTHLNEHRRIHTGYRP 40
>pdb|2EQ4|A Chain A, Solution Structure Of The 11th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 224
Length = 46
Score = 33.9 bits (76), Expect = 0.35, Method: Composition-based stats.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 129 EKLYECDICKNRFPSSGAMKKHRRKHTGERP 159
EKLY C C F + + KH R H+GE+P
Sbjct: 10 EKLYNCKECGKSFSRAPCLLKHERLHSGEKP 40
Score = 30.8 bits (68), Expect = 3.1, Method: Composition-based stats.
Identities = 15/30 (50%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Query: 157 ERPYECKEVCGRVFNRKDNLREHLRAHAGE 186
E+ Y CKE CG+ F+R L +H R H+GE
Sbjct: 10 EKLYNCKE-CGKSFSRAPCLLKHERLHSGE 38
>pdb|2EL4|A Chain A, Solution Structure Of The 15th Zf-C2h2 Domain From Human
Zinc Finger Protein 268
Length = 46
Score = 33.9 bits (76), Expect = 0.37, Method: Composition-based stats.
Identities = 16/29 (55%), Positives = 16/29 (55%)
Query: 301 PYQCDICRKTFIRKEDLTRHCLLHTGVKP 329
PY C C KTF K L H HTGVKP
Sbjct: 12 PYGCSQCAKTFSLKSQLIVHQRSHTGVKP 40
Score = 33.5 bits (75), Expect = 0.45, Method: Composition-based stats.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 327 VKPHKCPICTKGFTMKSSLKIHLLTHTKEPP 357
VKP+ C C K F++KS L +H +HT P
Sbjct: 10 VKPYGCSQCAKTFSLKSQLIVHQRSHTGVKP 40
Score = 30.8 bits (68), Expect = 3.4, Method: Composition-based stats.
Identities = 14/28 (50%), Positives = 15/28 (53%)
Query: 242 VKPHVCEYCEKAFIQASQLKAHMFHHTG 269
VKP+ C C K F SQL H HTG
Sbjct: 10 VKPYGCSQCAKTFSLKSQLIVHQRSHTG 37
>pdb|2EMJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
612- 644) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 33.9 bits (76), Expect = 0.37, Method: Composition-based stats.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 129 EKLYECDICKNRFPSSGAMKKHRRKHTGERP 159
EK +EC C F S + H+R HTGE+P
Sbjct: 10 EKPFECAECGKSFSISSQLATHQRIHTGEKP 40
Score = 32.7 bits (73), Expect = 0.96, Method: Composition-based stats.
Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Query: 157 ERPYECKEVCGRVFNRKDNLREHLRAHAGE 186
E+P+EC E CG+ F+ L H R H GE
Sbjct: 10 EKPFECAE-CGKSFSISSQLATHQRIHTGE 38
Score = 30.8 bits (68), Expect = 3.1, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 328 KPHKCPICTKGFTMKSSLKIHLLTHTKEPP 357
KP +C C K F++ S L H HT E P
Sbjct: 11 KPFECAECGKSFSISSQLATHQRIHTGEKP 40
Score = 30.0 bits (66), Expect = 5.6, Method: Composition-based stats.
Identities = 14/28 (50%), Positives = 16/28 (57%)
Query: 243 KPHVCEYCEKAFIQASQLKAHMFHHTGE 270
KP C C K+F +SQL H HTGE
Sbjct: 11 KPFECAECGKSFSISSQLATHQRIHTGE 38
Score = 29.3 bits (64), Expect = 10.0, Method: Composition-based stats.
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 301 PYQCDICRKTFIRKEDLTRHCLLHTGVKP 329
P++C C K+F L H +HTG KP
Sbjct: 12 PFECAECGKSFSISSQLATHQRIHTGEKP 40
>pdb|2EMH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
491- 523) Of Human Zinc Finger Protein 484
Length = 46
Score = 33.9 bits (76), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Query: 157 ERPYECKEVCGRVFNRKDNLREHLRAHAGE 186
ERPY C VCG+ F + NL +H + H GE
Sbjct: 10 ERPYIC-TVCGKAFTDRSNLIKHQKIHTGE 38
Score = 33.5 bits (75), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 301 PYQCDICRKTFIRKEDLTRHCLLHTGVKP 329
PY C +C K F + +L +H +HTG KP
Sbjct: 12 PYICTVCGKAFTDRSNLIKHQKIHTGEKP 40
Score = 30.0 bits (66), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 243 KPHVCEYCEKAFIQASQLKAHMFHHTGE 270
+P++C C KAF S L H HTGE
Sbjct: 11 RPYICTVCGKAFTDRSNLIKHQKIHTGE 38
Score = 30.0 bits (66), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 129 EKLYECDICKNRFPSSGAMKKHRRKHTGERP 159
E+ Y C +C F + KH++ HTGE+P
Sbjct: 10 ERPYICTVCGKAFTDRSNLIKHQKIHTGEKP 40
Score = 29.6 bits (65), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 3/32 (9%)
Query: 67 EEKQICTYIKVCGRVFNRKDNLREHLRAHAGE 98
E ICT VCG+ F + NL +H + H GE
Sbjct: 10 ERPYICT---VCGKAFTDRSNLIKHQKIHTGE 38
>pdb|1VA1|A Chain A, Solution Structure Of Transcription Factor Sp1 Dna
Binding Domain (Zinc Finger 1)
Length = 37
Score = 33.9 bits (76), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 22/32 (68%)
Query: 67 EEKQICTYIKVCGRVFNRKDNLREHLRAHAGE 98
++KQ +I+ CG+V+ + +LR HLR H GE
Sbjct: 5 KKKQHICHIQGCGKVYGKTSHLRAHLRWHTGE 36
Score = 30.0 bits (66), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 166 CGRVFNRKDNLREHLRAHAGE 186
CG+V+ + +LR HLR H GE
Sbjct: 16 CGKVYGKTSHLRAHLRWHTGE 36
>pdb|2YTP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
687- 719) Of Human Zinc Finger Protein 484
Length = 46
Score = 33.9 bits (76), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Query: 157 ERPYECKEVCGRVFNRKDNLREHLRAHAGE 186
ER YEC E CG+ F RK L H R H GE
Sbjct: 10 ERHYECSE-CGKAFARKSTLIMHQRIHTGE 38
Score = 32.7 bits (73), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 16/28 (57%)
Query: 302 YQCDICRKTFIRKEDLTRHCLLHTGVKP 329
Y+C C K F RK L H +HTG KP
Sbjct: 13 YECSECGKAFARKSTLIMHQRIHTGEKP 40
Score = 30.4 bits (67), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 129 EKLYECDICKNRFPSSGAMKKHRRKHTGERP 159
E+ YEC C F + H+R HTGE+P
Sbjct: 10 ERHYECSECGKAFARKSTLIMHQRIHTGEKP 40
>pdb|2EML|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
752- 784) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 33.9 bits (76), Expect = 0.43, Method: Composition-based stats.
Identities = 14/30 (46%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Query: 157 ERPYECKEVCGRVFNRKDNLREHLRAHAGE 186
E+PYEC VCG+ F+ + +L H R H+G+
Sbjct: 10 EKPYEC-SVCGKAFSHRQSLSVHQRIHSGK 38
Score = 33.5 bits (75), Expect = 0.51, Method: Composition-based stats.
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 301 PYQCDICRKTFIRKEDLTRHCLLHTGVKP 329
PY+C +C K F ++ L+ H +H+G KP
Sbjct: 12 PYECSVCGKAFSHRQSLSVHQRIHSGKKP 40
Score = 32.3 bits (72), Expect = 1.00, Method: Composition-based stats.
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 129 EKLYECDICKNRFPSSGAMKKHRRKHTGERP 159
EK YEC +C F ++ H+R H+G++P
Sbjct: 10 EKPYECSVCGKAFSHRQSLSVHQRIHSGKKP 40
Score = 32.0 bits (71), Expect = 1.5, Method: Composition-based stats.
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 328 KPHKCPICTKGFTMKSSLKIHLLTHTKEPP 357
KP++C +C K F+ + SL +H H+ + P
Sbjct: 11 KPYECSVCGKAFSHRQSLSVHQRIHSGKKP 40
>pdb|2ELT|A Chain A, Solution Structure Of The 3rd C2h2 Zinc Finger Of Human
Zinc Finger Protein 406
Length = 36
Score = 33.9 bits (76), Expect = 0.43, Method: Composition-based stats.
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 328 KPHKCPICTKGFTMKSSLKIHLLTHTKE 355
KP+KCP C+ +K++L +HL HT E
Sbjct: 8 KPYKCPQCSYASAIKANLNVHLRKHTGE 35
>pdb|2EN7|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
495- 525) Of Human Zinc Finger Protein 268
Length = 44
Score = 33.5 bits (75), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 19/31 (61%)
Query: 242 VKPHVCEYCEKAFIQASQLKAHMFHHTGENG 272
+KP+VC C KAF S L H HTGE+G
Sbjct: 10 MKPYVCNECGKAFRSKSYLIIHTRTHTGESG 40
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Query: 158 RPYECKEVCGRVFNRKDNLREHLRAHAGET 187
+PY C E CG+ F K L H R H GE+
Sbjct: 11 KPYVCNE-CGKAFRSKSYLIIHTRTHTGES 39
Score = 29.6 bits (65), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 17/29 (58%)
Query: 327 VKPHKCPICTKGFTMKSSLKIHLLTHTKE 355
+KP+ C C K F KS L IH THT E
Sbjct: 10 MKPYVCNECGKAFRSKSYLIIHTRTHTGE 38
>pdb|2EN4|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
284- 316) Of Human Zinc Finger Protein 347
Length = 46
Score = 33.5 bits (75), Expect = 0.46, Method: Composition-based stats.
Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 155 TGERPYECKEVCGRVFNRKDNLREHLRAHAGE 186
T E+PY+C E CG+ F + NL H H GE
Sbjct: 8 TKEKPYKCYE-CGKAFRTRSNLTTHQVIHTGE 38
Score = 30.8 bits (68), Expect = 2.9, Method: Composition-based stats.
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 301 PYQCDICRKTFIRKEDLTRHCLLHTGVK 328
PY+C C K F + +LT H ++HTG K
Sbjct: 12 PYKCYECGKAFRTRSNLTTHQVIHTGEK 39
Score = 30.8 bits (68), Expect = 3.2, Method: Composition-based stats.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 325 TGVKPHKCPICTKGFTMKSSLKIHLLTHTKE 355
T KP+KC C K F +S+L H + HT E
Sbjct: 8 TKEKPYKCYECGKAFRTRSNLTTHQVIHTGE 38
Score = 29.6 bits (65), Expect = 6.8, Method: Composition-based stats.
Identities = 14/28 (50%), Positives = 15/28 (53%)
Query: 243 KPHVCEYCEKAFIQASQLKAHMFHHTGE 270
KP+ C C KAF S L H HTGE
Sbjct: 11 KPYKCYECGKAFRTRSNLTTHQVIHTGE 38
>pdb|2EPT|A Chain A, Solution Structure Of The First C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 32
Length = 41
Score = 33.5 bits (75), Expect = 0.49, Method: Composition-based stats.
Identities = 15/31 (48%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Query: 155 TGERPYECKEVCGRVFNRKDNLREHLRAHAG 185
+G+R YEC+E CG+ F +K +L H R H G
Sbjct: 6 SGQRVYECQE-CGKSFRQKGSLTLHERIHTG 35
Score = 32.0 bits (71), Expect = 1.4, Method: Composition-based stats.
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 128 AEKLYECDICKNRFPSSGAMKKHRRKHTGERP 159
+++YEC C F G++ H R HTG P
Sbjct: 7 GQRVYECQECGKSFRQKGSLTLHERIHTGSGP 38
Score = 30.0 bits (66), Expect = 5.6, Method: Composition-based stats.
Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 268 TGENGHTCELCNKTFNRKARLELHMKYIHEGADP 301
+G+ + C+ C K+F +K L LH + IH G+ P
Sbjct: 6 SGQRVYECQECGKSFRQKGSLTLHER-IHTGSGP 38
Score = 29.6 bits (65), Expect = 6.3, Method: Composition-based stats.
Identities = 14/32 (43%), Positives = 18/32 (56%)
Query: 298 GADPYQCDICRKTFIRKEDLTRHCLLHTGVKP 329
G Y+C C K+F +K LT H +HTG P
Sbjct: 7 GQRVYECQECGKSFRQKGSLTLHERIHTGSGP 38
>pdb|2EPY|A Chain A, Solution Structure Of The 10th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 268
Length = 42
Score = 33.5 bits (75), Expect = 0.51, Method: Composition-based stats.
Identities = 18/33 (54%), Positives = 19/33 (57%)
Query: 240 SGVKPHVCEYCEKAFIQASQLKAHMFHHTGENG 272
SG K H C C KAF SQL H HTGE+G
Sbjct: 6 SGEKLHECNNCGKAFSFKSQLIIHQRIHTGESG 38
Score = 31.6 bits (70), Expect = 2.0, Method: Composition-based stats.
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 325 TGVKPHKCPICTKGFTMKSSLKIHLLTHTKE 355
+G K H+C C K F+ KS L IH HT E
Sbjct: 6 SGEKLHECNNCGKAFSFKSQLIIHQRIHTGE 36
Score = 30.0 bits (66), Expect = 5.4, Method: Composition-based stats.
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 155 TGERPYECKEVCGRVFNRKDNLREHLRAHAGET 187
+GE+ +EC CG+ F+ K L H R H GE+
Sbjct: 6 SGEKLHECNN-CGKAFSFKSQLIIHQRIHTGES 37
Score = 29.6 bits (65), Expect = 6.3, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 128 AEKLYECDICKNRFPSSGAMKKHRRKHTGE 157
EKL+EC+ C F + H+R HTGE
Sbjct: 7 GEKLHECNNCGKAFSFKSQLIIHQRIHTGE 36
>pdb|2WBT|A Chain A, The Structure Of A Double C2h2 Zinc Finger Protein From A
Hyperthermophilic Archaeal Virus In The Absence Of Dna
pdb|2WBT|B Chain B, The Structure Of A Double C2h2 Zinc Finger Protein From A
Hyperthermophilic Archaeal Virus In The Absence Of Dna
Length = 129
Score = 33.5 bits (75), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Query: 332 CPICTKGFTMKSSLKIHLLTHTKEPPKSCEVCGRAFIRQDCLIRHLRQKH 381
CP+C F+ SLK H+ E K C VC + F D + H+ +KH
Sbjct: 77 CPLCLMPFSSSVSLKQHI--RYTEHTKVCPVCKKEFTSTDSALDHVCKKH 124
>pdb|2EOZ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
809- 841) Of Human Zinc Finger Protein 473
Length = 46
Score = 33.5 bits (75), Expect = 0.56, Method: Composition-based stats.
Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 157 ERPYECKEVCGRVFNRKDNLREHLRAHAGET 187
E+PY C VCG+ F +L +HLR H ET
Sbjct: 10 EKPYSCN-VCGKAFVLSAHLNQHLRVHTQET 39
Score = 32.3 bits (72), Expect = 1.00, Method: Composition-based stats.
Identities = 17/36 (47%), Positives = 20/36 (55%), Gaps = 4/36 (11%)
Query: 355 EPPKSCEVCGRAFIRQDCLIRHLRQKHRSHLDEVLA 390
E P SC VCG+AF+ L HL Q R H E L+
Sbjct: 10 EKPYSCNVCGKAFV----LSAHLNQHLRVHTQETLS 41
Score = 32.0 bits (71), Expect = 1.4, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 328 KPHKCPICTKGFTMKSSLKIHLLTHTKE 355
KP+ C +C K F + + L HL HT+E
Sbjct: 11 KPYSCNVCGKAFVLSAHLNQHLRVHTQE 38
Score = 29.6 bits (65), Expect = 6.6, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 243 KPHVCEYCEKAFIQASQLKAHMFHHTGE 270
KP+ C C KAF+ ++ L H+ HT E
Sbjct: 11 KPYSCNVCGKAFVLSAHLNQHLRVHTQE 38
>pdb|3MEK|A Chain A, Crystal Structure Of Human Histone-Lysine N-
Methyltransferase Smyd3 In Complex With S-Adenosyl-L-
Methionine
Length = 429
Score = 33.1 bits (74), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 427 LLRCSKCKVTFYCSKQHQTLDWKAHKINC 455
L RCS+C+V YCS + Q W HK C
Sbjct: 60 LXRCSQCRVAKYCSAKCQKKAWPDHKREC 88
>pdb|2EMZ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
628- 660) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 33.1 bits (74), Expect = 0.60, Method: Composition-based stats.
Identities = 15/30 (50%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Query: 157 ERPYECKEVCGRVFNRKDNLREHLRAHAGE 186
ERP++C E CG+ F R+ +L HLR H+ E
Sbjct: 10 ERPFKCNE-CGKGFGRRSHLAGHLRLHSRE 38
>pdb|2YSP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
507- 539) Of Human Zinc Finger Protein 224
Length = 46
Score = 33.1 bits (74), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Query: 157 ERPYECKEVCGRVFNRKDNLREHLRAHAGE 186
E+PY+C E CG+ +N K NL H + H GE
Sbjct: 10 EKPYKC-EKCGKGYNSKFNLDMHQKVHTGE 38
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 328 KPHKCPICTKGFTMKSSLKIHLLTHTKEPP 357
KP+KC C KG+ K +L +H HT E P
Sbjct: 11 KPYKCEKCGKGYNSKFNLDMHQKVHTGERP 40
Score = 29.3 bits (64), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 129 EKLYECDICKNRFPSSGAMKKHRRKHTGERP 159
EK Y+C+ C + S + H++ HTGERP
Sbjct: 10 EKPYKCEKCGKGYNSKFNLDMHQKVHTGERP 40
Score = 29.3 bits (64), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 301 PYQCDICRKTFIRKEDLTRHCLLHTGVKP 329
PY+C+ C K + K +L H +HTG +P
Sbjct: 12 PYKCEKCGKGYNSKFNLDMHQKVHTGERP 40
>pdb|2EPV|A Chain A, Solution Structure Of The 20th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 268
Length = 44
Score = 33.1 bits (74), Expect = 0.64, Method: Composition-based stats.
Identities = 16/29 (55%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Query: 157 ERPYECKEVCGRVFNRKDNLREHLRAHAG 185
E+PYEC E CG+ F K L H R HAG
Sbjct: 10 EKPYECNE-CGKAFIWKSLLIVHERTHAG 37
>pdb|2EMM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
544- 576) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 33.1 bits (74), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 20/29 (68%)
Query: 301 PYQCDICRKTFIRKEDLTRHCLLHTGVKP 329
P++C+ C K+FI+ L +H +HTG KP
Sbjct: 12 PHKCNECGKSFIQSAHLIQHQRIHTGEKP 40
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 243 KPHVCEYCEKAFIQASQLKAHMFHHTGE 270
+PH C C K+FIQ++ L H HTGE
Sbjct: 11 RPHKCNECGKSFIQSAHLIQHQRIHTGE 38
Score = 30.4 bits (67), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Query: 157 ERPYECKEVCGRVFNRKDNLREHLRAHAGE 186
ERP++C E CG+ F + +L +H R H GE
Sbjct: 10 ERPHKCNE-CGKSFIQSAHLIQHQRIHTGE 38
Score = 29.3 bits (64), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 20/31 (64%)
Query: 129 EKLYECDICKNRFPSSGAMKKHRRKHTGERP 159
E+ ++C+ C F S + +H+R HTGE+P
Sbjct: 10 ERPHKCNECGKSFIQSAHLIQHQRIHTGEKP 40
>pdb|2YTH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
479- 511) Of Human Zinc Finger Protein 224
Length = 46
Score = 33.1 bits (74), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 129 EKLYECDICKNRFPSSGAMKKHRRKHTGERP 159
EK ++C+ C RF + + H+R HTGE+P
Sbjct: 10 EKPFQCEECGKRFTQNSHLHSHQRVHTGEKP 40
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Query: 157 ERPYECKEVCGRVFNRKDNLREHLRAHAGE 186
E+P++C+E CG+ F + +L H R H GE
Sbjct: 10 EKPFQCEE-CGKRFTQNSHLHSHQRVHTGE 38
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 301 PYQCDICRKTFIRKEDLTRHCLLHTGVKP 329
P+QC+ C K F + L H +HTG KP
Sbjct: 12 PFQCEECGKRFTQNSHLHSHQRVHTGEKP 40
Score = 30.0 bits (66), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 16/28 (57%)
Query: 243 KPHVCEYCEKAFIQASQLKAHMFHHTGE 270
KP CE C K F Q S L +H HTGE
Sbjct: 11 KPFQCEECGKRFTQNSHLHSHQRVHTGE 38
>pdb|2ENE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
592- 624) Of Human Zinc Finger Protein 347
Length = 46
Score = 33.1 bits (74), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 301 PYQCDICRKTFIRKEDLTRHCLLHTGVKP 329
PY+C+ C K F L+RH +HTG KP
Sbjct: 12 PYKCNECGKVFRHNSYLSRHQRIHTGEKP 40
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Query: 157 ERPYECKEVCGRVFNRKDNLREHLRAHAGE 186
E+PY+C E CG+VF L H R H GE
Sbjct: 10 EKPYKCNE-CGKVFRHNSYLSRHQRIHTGE 38
Score = 30.4 bits (67), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 129 EKLYECDICKNRFPSSGAMKKHRRKHTGERP 159
EK Y+C+ C F + + +H+R HTGE+P
Sbjct: 10 EKPYKCNECGKVFRHNSYLSRHQRIHTGEKP 40
>pdb|2EOH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
780- 812) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 33.1 bits (74), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 18/26 (69%)
Query: 301 PYQCDICRKTFIRKEDLTRHCLLHTG 326
PY+C CRKTFI+ L +H +HTG
Sbjct: 12 PYECKECRKTFIQIGHLNQHKRVHTG 37
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 129 EKLYECDICKNRFPSSGAMKKHRRKHTGER 158
+K YEC C+ F G + +H+R HTGER
Sbjct: 10 KKPYECKECRKTFIQIGHLNQHKRVHTGER 39
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 16/28 (57%)
Query: 243 KPHVCEYCEKAFIQASQLKAHMFHHTGE 270
KP+ C+ C K FIQ L H HTGE
Sbjct: 11 KPYECKECRKTFIQIGHLNQHKRVHTGE 38
Score = 30.0 bits (66), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Query: 157 ERPYECKEVCGRVFNRKDNLREHLRAHAGE 186
++PYECKE C + F + +L +H R H GE
Sbjct: 10 KKPYECKE-CRKTFIQIGHLNQHKRVHTGE 38
>pdb|2EMA|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
312- 344) Of Human Zinc Finger Protein 347
Length = 46
Score = 33.1 bits (74), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 302 YQCDICRKTFIRKEDLTRHCLLHTGVKP 329
Y+C+ C K F R L++H +HTG KP
Sbjct: 13 YKCNECGKVFSRNSQLSQHQKIHTGEKP 40
Score = 32.3 bits (72), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Query: 157 ERPYECKEVCGRVFNRKDNLREHLRAHAGE 186
E+ Y+C E CG+VF+R L +H + H GE
Sbjct: 10 EKRYKCNE-CGKVFSRNSQLSQHQKIHTGE 38
Score = 30.8 bits (68), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 20/31 (64%)
Query: 129 EKLYECDICKNRFPSSGAMKKHRRKHTGERP 159
EK Y+C+ C F + + +H++ HTGE+P
Sbjct: 10 EKRYKCNECGKVFSRNSQLSQHQKIHTGEKP 40
>pdb|2DLK|A Chain A, Solution Structure Of The First And The Second Zf-C2h2
Domains Of Zinc Finger Protein 692
Length = 79
Score = 33.1 bits (74), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 47 GCYRIFTSQGYMLLSYKSKE-EEKQICTYIKVCGRVFNRKDNLREHLRAHA 96
GC RIF+++ Y+ K + +K CG+ FN K +L+EH++ H+
Sbjct: 14 GCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHS 64
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 4/69 (5%)
Query: 268 TGENGHTCEL--CNKTFNRKARLELHMKYIHEGADPYQCD--ICRKTFIRKEDLTRHCLL 323
+G +G C+ C + F+ + L H KY H + C C K+F K+ L H L
Sbjct: 3 SGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKL 62
Query: 324 HTGVKPHKC 332
H+ + + C
Sbjct: 63 HSDTRDYIC 71
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 21/40 (52%)
Query: 210 IHERLHGLIERTCYARFAAKETLNRHMKTHSGVKPHVCEY 249
IH++ E C F K+ L HMK HS + ++CE+
Sbjct: 34 IHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICEF 73
>pdb|2EN1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
563- 595) Of Human Zinc Finger Protein 224
Length = 46
Score = 32.7 bits (73), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 129 EKLYECDICKNRFPSSGAMKKHRRKHTGERP 159
EK ++C+ C RF + + H+R HTGE+P
Sbjct: 10 EKPFKCEECGKRFTQNSQLHSHQRVHTGEKP 40
Score = 32.3 bits (72), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 16/28 (57%), Positives = 17/28 (60%)
Query: 243 KPHVCEYCEKAFIQASQLKAHMFHHTGE 270
KP CE C K F Q SQL +H HTGE
Sbjct: 11 KPFKCEECGKRFTQNSQLHSHQRVHTGE 38
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Query: 157 ERPYECKEVCGRVFNRKDNLREHLRAHAGE 186
E+P++C+E CG+ F + L H R H GE
Sbjct: 10 EKPFKCEE-CGKRFTQNSQLHSHQRVHTGE 38
Score = 30.0 bits (66), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 301 PYQCDICRKTFIRKEDLTRHCLLHTGVKP 329
P++C+ C K F + L H +HTG KP
Sbjct: 12 PFKCEECGKRFTQNSQLHSHQRVHTGEKP 40
>pdb|2EM9|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
367- 399) Of Human Zinc Finger Protein 224
Length = 46
Score = 32.7 bits (73), Expect = 0.78, Method: Composition-based stats.
Identities = 15/30 (50%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Query: 157 ERPYECKEVCGRVFNRKDNLREHLRAHAGE 186
E+PY CKE CG+ F L +H R H+GE
Sbjct: 10 EKPYNCKE-CGKSFRWASCLLKHQRVHSGE 38
Score = 31.6 bits (70), Expect = 1.8, Method: Composition-based stats.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 129 EKLYECDICKNRFPSSGAMKKHRRKHTGERP 159
EK Y C C F + + KH+R H+GE+P
Sbjct: 10 EKPYNCKECGKSFRWASCLLKHQRVHSGEKP 40
>pdb|2EOI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
329- 359) Of Human Zinc Finger Protein 268
Length = 44
Score = 32.7 bits (73), Expect = 0.81, Method: Composition-based stats.
Identities = 14/32 (43%), Positives = 18/32 (56%)
Query: 128 AEKLYECDICKNRFPSSGAMKKHRRKHTGERP 159
EKL+EC C+ F + H+R HTGE P
Sbjct: 7 GEKLHECSECRKTFSFHSQLVIHQRIHTGENP 38
Score = 32.0 bits (71), Expect = 1.6, Method: Composition-based stats.
Identities = 17/32 (53%), Positives = 17/32 (53%)
Query: 240 SGVKPHVCEYCEKAFIQASQLKAHMFHHTGEN 271
SG K H C C K F SQL H HTGEN
Sbjct: 6 SGEKLHECSECRKTFSFHSQLVIHQRIHTGEN 37
Score = 31.2 bits (69), Expect = 2.7, Method: Composition-based stats.
Identities = 15/33 (45%), Positives = 18/33 (54%)
Query: 325 TGVKPHKCPICTKGFTMKSSLKIHLLTHTKEPP 357
+G K H+C C K F+ S L IH HT E P
Sbjct: 6 SGEKLHECSECRKTFSFHSQLVIHQRIHTGENP 38
Score = 30.4 bits (67), Expect = 4.6, Method: Composition-based stats.
Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 268 TGENGHTCELCNKTFNRKARLELHMKYIHEGADP 301
+GE H C C KTF+ ++L +H + IH G +P
Sbjct: 6 SGEKLHECSECRKTFSFHSQLVIHQR-IHTGENP 38
>pdb|2EP3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
631- 663) Of Human Zinc Finger Protein 484
Length = 46
Score = 32.7 bits (73), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Query: 157 ERPYECKEVCGRVFNRKDNLREHLRAHAGE 186
E+PY C E CG+ F + NL H + H GE
Sbjct: 10 EKPYRCAE-CGKAFTDRSNLFTHQKIHTGE 38
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 301 PYQCDICRKTFIRKEDLTRHCLLHTGVKP 329
PY+C C K F + +L H +HTG KP
Sbjct: 12 PYRCAECGKAFTDRSNLFTHQKIHTGEKP 40
Score = 30.0 bits (66), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 328 KPHKCPICTKGFTMKSSLKIHLLTHTKEPP 357
KP++C C K FT +S+L H HT E P
Sbjct: 11 KPYRCAECGKAFTDRSNLFTHQKIHTGEKP 40
>pdb|2M0F|A Chain A, Solution Structure Of Miz-1 Zinc Finger 7
Length = 29
Score = 32.7 bits (73), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Query: 159 PYECKEVCGRVFNRKDNLREHLRAHAGE 186
P +C+E CG+ F NL+ HLR H+GE
Sbjct: 2 PLKCRE-CGKQFTTSGNLKRHLRIHSGE 28
>pdb|2YTG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
369- 401) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 32.7 bits (73), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 22/30 (73%), Gaps = 1/30 (3%)
Query: 157 ERPYECKEVCGRVFNRKDNLREHLRAHAGE 186
E+P++C E CG+ +N++ +L +H R H GE
Sbjct: 10 EKPFKCGE-CGKSYNQRVHLTQHQRVHTGE 38
Score = 30.4 bits (67), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 20/29 (68%)
Query: 301 PYQCDICRKTFIRKEDLTRHCLLHTGVKP 329
P++C C K++ ++ LT+H +HTG KP
Sbjct: 12 PFKCGECGKSYNQRVHLTQHQRVHTGEKP 40
>pdb|2EOS|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
626- 654) Of Human B-Cell Lymphoma 6 Protein
Length = 42
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 17/31 (54%)
Query: 129 EKLYECDICKNRFPSSGAMKKHRRKHTGERP 159
EK Y C+IC RF +K H R HTG P
Sbjct: 9 EKPYPCEICGTRFRHLQTLKSHLRIHTGSGP 39
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Query: 157 ERPYECKEVCGRVFNRKDNLREHLRAHAGE 186
E+PY C E+CG F L+ HLR H G
Sbjct: 9 EKPYPC-EICGTRFRHLQTLKSHLRIHTGS 37
>pdb|2YRH|A Chain A, Solution Structure Of The C2h2-Type Zinc Finger Domain
(699- 729) From Zinc Finger Protein 473
Length = 44
Score = 32.3 bits (72), Expect = 1.1, Method: Composition-based stats.
Identities = 16/31 (51%), Positives = 18/31 (58%)
Query: 240 SGVKPHVCEYCEKAFIQASQLKAHMFHHTGE 270
SG KP VC C K F Q+S L H H+GE
Sbjct: 6 SGKKPLVCNECGKTFRQSSCLSKHQRIHSGE 36
Score = 30.8 bits (68), Expect = 2.9, Method: Composition-based stats.
Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 155 TGERPYECKEVCGRVFNRKDNLREHLRAHAGE 186
+G++P C E CG+ F + L +H R H+GE
Sbjct: 6 SGKKPLVCNE-CGKTFRQSSCLSKHQRIHSGE 36
Score = 30.4 bits (67), Expect = 4.4, Method: Composition-based stats.
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 134 CDICKNRFPSSGAMKKHRRKHTGERP 159
C+ C F S + KH+R H+GE+P
Sbjct: 13 CNECGKTFRQSSCLSKHQRIHSGEKP 38
Score = 30.4 bits (67), Expect = 4.6, Method: Composition-based stats.
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 298 GADPYQCDICRKTFIRKEDLTRHCLLHTGVKP 329
G P C+ C KTF + L++H +H+G KP
Sbjct: 7 GKKPLVCNECGKTFRQSSCLSKHQRIHSGEKP 38
>pdb|2EM5|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
768- 800) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 327 VKPHKCPICTKGFTMKSSLKIHLLTHTKEPP 357
K H+C C +GFT+KS L H HT E P
Sbjct: 10 TKSHQCHECGRGFTLKSHLNQHQRIHTGEKP 40
>pdb|2YTT|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
204- 236) Of Human Zinc Finger Protein 473
Length = 46
Score = 32.3 bits (72), Expect = 1.1, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 328 KPHKCPICTKGFTMKSSLKIHLLTHTKEPP 357
KP++C C K F+ L H +THT+E P
Sbjct: 11 KPYQCSECGKSFSGSYRLTQHWITHTREKP 40
Score = 31.6 bits (70), Expect = 2.1, Method: Composition-based stats.
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 301 PYQCDICRKTFIRKEDLTRHCLLHTGVKP 329
PYQC C K+F LT+H + HT KP
Sbjct: 12 PYQCSECGKSFSGSYRLTQHWITHTREKP 40
>pdb|1PAA|A Chain A, Structure Of A Histidine-X4-Histidine Zinc Finger Domain:
Insights Into Adr1-Uas1 Protein-Dna Recognition
Length = 30
Score = 32.3 bits (72), Expect = 1.1, Method: Composition-based stats.
Identities = 13/27 (48%), Positives = 19/27 (70%)
Query: 359 SCEVCGRAFIRQDCLIRHLRQKHRSHL 385
+C +C RAF R+D LIRH ++ H +L
Sbjct: 4 ACGLCNRAFTRRDLLIRHAQKIHSGNL 30
>pdb|2YTJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
771- 803) Of Human Zinc Finger Protein 484
Length = 46
Score = 32.3 bits (72), Expect = 1.2, Method: Composition-based stats.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 328 KPHKCPICTKGFTMKSSLKIHLLTHTKEPP 357
KP+ C C K FT++S+L H HTK+ P
Sbjct: 11 KPYICAECGKAFTIRSNLIKHQKIHTKQKP 40
>pdb|2EMG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
463- 495) Of Human Zinc Finger Protein 484
Length = 46
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Query: 157 ERPYECKEVCGRVFNRKDNLREHLRAHAGE 186
E P+ C E CG+VF K NL H + H GE
Sbjct: 10 ENPFICSE-CGKVFTHKTNLIIHQKIHTGE 38
Score = 29.3 bits (64), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 300 DPYQCDICRKTFIRKEDLTRHCLLHTGVKP 329
+P+ C C K F K +L H +HTG +P
Sbjct: 11 NPFICSECGKVFTHKTNLIIHQKIHTGERP 40
>pdb|2D9H|A Chain A, Solution Structure Of The Forth And Fifth Zf-C2h2 Domains
Of Zinc Finger Protein 692
Length = 78
Score = 32.0 bits (71), Expect = 1.3, Method: Composition-based stats.
Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Query: 268 TGENGHTCELCNKTFNRKARLELHMKYIHE--GADPYQCDICRKTFIRKEDLTRH 320
+G +G CE+C T +KA L H + E A + C+ C K F + + + H
Sbjct: 3 SGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAH 57
Score = 29.3 bits (64), Expect = 8.5, Method: Composition-based stats.
Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 7/66 (10%)
Query: 325 TGVKPHKCPICTKGFT--MKSSLKIHLLTHTKEPPK---SCEVCGRAFIRQDCLIRHLRQ 379
+G +C IC GFT K+SL H H + CE CG+ F + D + H +
Sbjct: 3 SGSSGLQCEIC--GFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSK 60
Query: 380 KHRSHL 385
H + L
Sbjct: 61 SHPALL 66
>pdb|2EPS|A Chain A, Solution Structure Of The 4th Zinc Finger Domain Of Zinc
Finger Protein 278
Length = 54
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Query: 299 ADPYQCDICRKTFIRKEDLTRHC-LLHTGVKPHKCPICTKG 338
PY C C K F R + L H +HT +PHKC + G
Sbjct: 10 GKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSG 50
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 19/34 (55%)
Query: 273 HTCELCNKTFNRKARLELHMKYIHEGADPYQCDI 306
+ C+ C K F+R L H+K +H P++C +
Sbjct: 13 YICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQV 46
Score = 30.4 bits (67), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 243 KPHVCEYCEKAFIQASQLKAHMFH-HTGENGHTCEL 277
KP++C+ C K F + L H+ HT E H C++
Sbjct: 11 KPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQV 46
>pdb|2EOP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
719- 751) Of Human Zinc Finger Protein 268
Length = 46
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 17/29 (58%)
Query: 243 KPHVCEYCEKAFIQASQLKAHMFHHTGEN 271
KPH C C K+F SQL H HTGEN
Sbjct: 11 KPHECRECGKSFSFNSQLIVHQRIHTGEN 39
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 328 KPHKCPICTKGFTMKSSLKIHLLTHTKEPP 357
KPH+C C K F+ S L +H HT E P
Sbjct: 11 KPHECRECGKSFSFNSQLIVHQRIHTGENP 40
Score = 30.0 bits (66), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Query: 157 ERPYECKEVCGRVFNRKDNLREHLRAHAGE 186
E+P+EC+E CG+ F+ L H R H GE
Sbjct: 10 EKPHECRE-CGKSFSFNSQLIVHQRIHTGE 38
>pdb|2HH7|A Chain A, Crystal Structure Of Cu(I) Bound Csor From Mycobacterium
Tuberculosis
Length = 119
Score = 32.0 bits (71), Expect = 1.5, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 684 QLVSNKSTNKQDLKTIRG--DQITWIDGRETYCSNIGRLISEVDAIIMRANRMV 735
+L + K LKT+RG D I + + YC ++ + IS V + + RANR++
Sbjct: 4 ELTAKKRAALNRLKTVRGHLDGIVRMLESDAYCVDVMKQISAVQSSLERANRVM 57
>pdb|2EON|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
397- 429) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 32.0 bits (71), Expect = 1.6, Method: Composition-based stats.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 129 EKLYECDICKNRFPSSGAMKKHRRKHTGERP 159
EK Y+C +C F S + +H H+GERP
Sbjct: 10 EKPYKCQVCGKAFRVSSHLVQHHSVHSGERP 40
Score = 30.8 bits (68), Expect = 3.4, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Query: 157 ERPYECKEVCGRVFNRKDNLREHLRAHAGE 186
E+PY+C +VCG+ F +L +H H+GE
Sbjct: 10 EKPYKC-QVCGKAFRVSSHLVQHHSVHSGE 38
Score = 29.6 bits (65), Expect = 6.3, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 328 KPHKCPICTKGFTMKSSLKIHLLTHTKEPP 357
KP+KC +C K F + S L H H+ E P
Sbjct: 11 KPYKCQVCGKAFRVSSHLVQHHSVHSGERP 40
Score = 29.3 bits (64), Expect = 9.6, Method: Composition-based stats.
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 301 PYQCDICRKTFIRKEDLTRHCLLHTGVKP 329
PY+C +C K F L +H +H+G +P
Sbjct: 12 PYKCQVCGKAFRVSSHLVQHHSVHSGERP 40
>pdb|1SP2|A Chain A, Nmr Structure Of A Zinc Finger Domain From Transcription
Factor Sp1f2, Minimized Average Structure
pdb|1VA2|A Chain A, Solution Structure Of Transcription Factor Sp1 Dna Binding
Domain (Zinc Finger 2)
Length = 31
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Query: 158 RPYECK-EVCGRVFNRKDNLREHLRAHAGE 186
RP+ C CG+ F R D L+ H R H GE
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGE 30
Score = 30.8 bits (68), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Query: 71 ICTYIKVCGRVFNRKDNLREHLRAHAGE 98
+CT+ CG+ F R D L+ H R H GE
Sbjct: 4 MCTW-SYCGKRFTRSDELQRHKRTHTGE 30
>pdb|2EPU|A Chain A, Solution Structure Of The Secound C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 32
Length = 45
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Query: 157 ERPYECKEVCGRVFNRKDNLREHLRAHAGE 186
++P+EC CG+ F K NL H R H GE
Sbjct: 10 QKPFECTH-CGKSFRAKGNLVTHQRIHTGE 38
>pdb|1ARD|A Chain A, Structures Of Dna-Binding Mutant Zinc Finger Domains:
Implications For Dna Binding
Length = 29
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 20/28 (71%), Gaps = 4/28 (14%)
Query: 360 CEVCGRAFIRQDCLIRHLRQKHRSHLDE 387
CEVC RAF RQ+ HL++ +RSH +E
Sbjct: 5 CEVCTRAFARQE----HLKRHYRSHTNE 28
Score = 29.3 bits (64), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 16/23 (69%)
Query: 164 EVCGRVFNRKDNLREHLRAHAGE 186
EVC R F R+++L+ H R+H E
Sbjct: 6 EVCTRAFARQEHLKRHYRSHTNE 28
>pdb|2EMI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
547- 579) Of Human Zinc Finger Protein 484
Length = 46
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 302 YQCDICRKTFIRKEDLTRHCLLHTGVKP 329
Y+C C K FI+K L+ H +H G KP
Sbjct: 13 YECSECGKAFIQKSTLSMHQRIHRGEKP 40
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Query: 157 ERPYECKEVCGRVFNRKDNLREHLRAHAGE 186
ER YEC E CG+ F +K L H R H GE
Sbjct: 10 ERHYECSE-CGKAFIQKSTLSMHQRIHRGE 38
>pdb|1ARF|A Chain A, Structures Of Dna-Binding Mutant Zinc Finger Domains:
Implications For Dna Binding
Length = 29
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/28 (57%), Positives = 19/28 (67%), Gaps = 4/28 (14%)
Query: 360 CEVCGRAFIRQDCLIRHLRQKHRSHLDE 387
CEVC RAF RQ+ L RH +RSH +E
Sbjct: 5 CEVCTRAFARQEYLKRH----YRSHTNE 28
>pdb|2ENT|A Chain A, Solution Structure Of The Second C2h2-Type Zinc Finger
Domain From Human Krueppel-Like Factor 15
Length = 48
Score = 31.6 bits (70), Expect = 2.1, Method: Composition-based stats.
Identities = 12/23 (52%), Positives = 17/23 (73%)
Query: 222 CYARFAAKETLNRHMKTHSGVKP 244
C RF+ + L+RH ++HSGVKP
Sbjct: 20 CGWRFSRSDELSRHRRSHSGVKP 42
Score = 30.4 bits (67), Expect = 4.6, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Query: 157 ERPYECK-EVCGRVFNRKDNLREHLRAHAG 185
E+P+ C CG F+R D L H R+H+G
Sbjct: 10 EKPFACTWPGCGWRFSRSDELSRHRRSHSG 39
>pdb|1ARE|A Chain A, Structures Of Dna-Binding Mutant Zinc Finger Domains:
Implications For Dna Binding
Length = 29
Score = 31.2 bits (69), Expect = 2.2, Method: Composition-based stats.
Identities = 16/28 (57%), Positives = 19/28 (67%), Gaps = 4/28 (14%)
Query: 360 CEVCGRAFIRQDCLIRHLRQKHRSHLDE 387
CEVC RAF RQ+ L RH +RSH +E
Sbjct: 5 CEVCTRAFARQEALKRH----YRSHTNE 28
>pdb|2EMC|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
641- 673) Of Human Zinc Finger Protein 473
Length = 46
Score = 31.2 bits (69), Expect = 2.2, Method: Composition-based stats.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 301 PYQCDICRKTFIRKEDLTRHCLLHTGVKP 329
P++C+ C KTF L++H L+H G P
Sbjct: 12 PFKCNECGKTFSHSAHLSKHQLIHAGENP 40
Score = 30.8 bits (68), Expect = 2.9, Method: Composition-based stats.
Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 155 TGERPYECKEVCGRVFNRKDNLREHLRAHAGE 186
T E P++C E CG+ F+ +L +H HAGE
Sbjct: 8 TKEHPFKCNE-CGKTFSHSAHLSKHQLIHAGE 38
>pdb|2LVR|A Chain A, Solution Structure Of Miz-1 Zinc Finger 8
Length = 30
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 130 KLYECDICKNRFPSSGAMKKHRRKHTGER 158
K Y C C+ +F GA+++H R HTGE+
Sbjct: 2 KPYVCIHCQRQFADPGALQRHVRIHTGEK 30
Score = 29.6 bits (65), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 242 VKPHVCEYCEKAFIQASQLKAHMFHHTGEN 271
+KP+VC +C++ F L+ H+ HTGE
Sbjct: 1 MKPYVCIHCQRQFADPGALQRHVRIHTGEK 30
>pdb|2GQJ|A Chain A, Solution Structure Of The Two Zf-C2h2 Like
Domains(493-575) Of Human Zinc Finger Protein Kiaa1196
Length = 98
Score = 30.8 bits (68), Expect = 2.8, Method: Composition-based stats.
Identities = 25/81 (30%), Positives = 31/81 (38%), Gaps = 5/81 (6%)
Query: 266 HHTGENGHTCELCNKTFNRKARLEL--HMKYIHEGADPYQCDICRKTFIRKEDLTRHCLL 323
H GE C CN RK + L HM+ + D +C CRK F K L H +
Sbjct: 20 HERGEA--VCPTCN-VVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMA 76
Query: 324 HTGVKPHKCPICTKGFTMKSS 344
KP G + SS
Sbjct: 77 EHSAKPSDAEASEGGESGPSS 97
>pdb|2EPX|A Chain A, Solution Structure Of The Third C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 28 Homolog
Length = 47
Score = 30.8 bits (68), Expect = 3.0, Method: Composition-based stats.
Identities = 13/25 (52%), Positives = 15/25 (60%)
Query: 357 PKSCEVCGRAFIRQDCLIRHLRQKH 381
P C CG+AFI+ LIRH R H
Sbjct: 12 PYECIECGKAFIQNTSLIRHWRYYH 36
Score = 30.8 bits (68), Expect = 3.6, Method: Composition-based stats.
Identities = 15/29 (51%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Query: 243 KPHVCEYCEKAFIQASQLKAH-MFHHTGE 270
KP+ C C KAFIQ + L H ++HTGE
Sbjct: 11 KPYECIECGKAFIQNTSLIRHWRYYHTGE 39
Score = 30.4 bits (67), Expect = 3.9, Method: Composition-based stats.
Identities = 15/30 (50%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Query: 301 PYQCDICRKTFIRKEDLTRHC-LLHTGVKP 329
PY+C C K FI+ L RH HTG KP
Sbjct: 12 PYECIECGKAFIQNTSLIRHWRYYHTGEKP 41
>pdb|2EMF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
379- 411) Of Human Zinc Finger Protein 484
Length = 46
Score = 30.8 bits (68), Expect = 3.3, Method: Composition-based stats.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 302 YQCDICRKTFIRKEDLTRHCLLHTGVKP 329
++C C K F RK L+ H +HTG KP
Sbjct: 13 FECTECGKAFTRKSTLSMHQKIHTGEKP 40
Score = 29.6 bits (65), Expect = 7.0, Method: Composition-based stats.
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 328 KPHKCPICTKGFTMKSSLKIHLLTHTKEPP 357
K +C C K FT KS+L +H HT E P
Sbjct: 11 KHFECTECGKAFTRKSTLSMHQKIHTGEKP 40
Score = 29.6 bits (65), Expect = 7.4, Method: Composition-based stats.
Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Query: 160 YECKEVCGRVFNRKDNLREHLRAHAGE 186
+EC E CG+ F RK L H + H GE
Sbjct: 13 FECTE-CGKAFTRKSTLSMHQKIHTGE 38
>pdb|2D8Q|A Chain A, Solution Structure Of The Mynd Domain Of The Human Zinc
Finger Mynd Domain-Containing Protein 10
Length = 70
Score = 30.8 bits (68), Expect = 3.3, Method: Composition-based stats.
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 429 RCSKCKVTFYCSKQHQTLDWKAHKINC 455
RCS+C+ +YC ++ Q W+ H C
Sbjct: 28 RCSRCQNEWYCCRECQVKHWEKHGKTC 54
>pdb|2EOO|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
425- 457) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 30.8 bits (68), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Query: 157 ERPYECKEVCGRVFNRKDNLREHLRAH 183
ERPY C E CG+ F R +L EHL+ H
Sbjct: 10 ERPYGCNE-CGKNFGRHSHLIEHLKRH 35
>pdb|2DAN|A Chain A, The Solution Structure Of The Mynd Domain (Leu384-Cys430)
Of Human Zinc Finger Mynd Domain Containing Protein 10
Length = 60
Score = 30.8 bits (68), Expect = 3.6, Method: Composition-based stats.
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 429 RCSKCKVTFYCSKQHQTLDWKAHKINCN 456
RCS+C+ +YC ++ Q W+ H C+
Sbjct: 28 RCSRCQNEWYCCRECQVKHWEKHGKTCS 55
>pdb|2EL6|A Chain A, Solution Structure Of The 21th Zf-C2h2 Domain From Human
Zinc Finger Protein 268
Length = 46
Score = 30.4 bits (67), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 327 VKPHKCPICTKGFTMKSSLKIHLLTHTKEPP 357
V P+KC C K F+ K L +H HT+E P
Sbjct: 10 VNPYKCSQCEKSFSGKLRLLVHQRMHTREKP 40
>pdb|2EPZ|A Chain A, Solution Structure Of The 4th C2h2 Type Zinc Finger Domain
Of Zinc Finger Protein 28 Homolog
Length = 46
Score = 30.4 bits (67), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 129 EKLYECDICKNRFPSSGAMKKHRRKHTGERP 159
EK ++C C F + +HRR HTGE+P
Sbjct: 10 EKPFDCIDCGKAFSDHIGLNQHRRIHTGEKP 40
>pdb|2KVF|A Chain A, Structure Of The Three-Cys2his2 Domain Of Mouse Testis
Zinc Finger Protein
Length = 28
Score = 30.4 bits (67), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Query: 158 RPYECKEVCGRVFNRKDNLREHLRAHAG 185
RPY C VCG+ F+ K + H R H G
Sbjct: 2 RPYSC-SVCGKRFSLKHQMETHYRVHTG 28
>pdb|2ELX|A Chain A, Solution Structure Of The 8th C2h2 Zinc Finger Of Mouse
Zinc Finger Protein 406
Length = 35
Score = 30.4 bits (67), Expect = 4.3, Method: Composition-based stats.
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 268 TGENGHTCELCNKTFNRKARLELHMKYIHEGA 299
+G +G+ C LC K F RL H++ +H A
Sbjct: 3 SGSSGYVCALCLKKFVSSIRLRSHIREVHGAA 34
>pdb|2EM8|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
423- 455) Of Human Zinc Finger Protein 224
Length = 46
Score = 30.4 bits (67), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Query: 157 ERPYECKEVCGRVFNRKDNLREHLRAHAGE 186
E+PY+C E CG+ + R+ +L H R H GE
Sbjct: 10 EKPYKCVE-CGKGYKRRLDLDFHQRVHTGE 38
>pdb|2ELR|A Chain A, Solution Structure Of The 15th C2h2 Zinc Finger Of Human
Zinc Finger Protein 406
Length = 36
Score = 30.0 bits (66), Expect = 5.2, Method: Composition-based stats.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 130 KLYECDICKNRFPSSGAMKKHRRKHTGE 157
K + CD+C +F S G +K H+ HT +
Sbjct: 8 KTHLCDMCGKKFKSKGTLKSHKLLHTAD 35
>pdb|2YTM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
696- 728) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 30.0 bits (66), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 129 EKLYECDICKNRFPSSGAMKKHRRKHTGERP 159
EK Y+C C F + + +H+R HTG+RP
Sbjct: 10 EKPYKCMECGKAFGDNSSCTQHQRLHTGQRP 40
Score = 29.6 bits (65), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Query: 157 ERPYECKEVCGRVFNRKDNLREHLRAHAGE 186
E+PY+C E CG+ F + +H R H G+
Sbjct: 10 EKPYKCME-CGKAFGDNSSCTQHQRLHTGQ 38
Score = 29.6 bits (65), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 301 PYQCDICRKTFIRKEDLTRHCLLHTGVKP 329
PY+C C K F T+H LHTG +P
Sbjct: 12 PYKCMECGKAFGDNSSCTQHQRLHTGQRP 40
>pdb|2EN3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
796- 828) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 29.3 bits (64), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 20/27 (74%), Gaps = 1/27 (3%)
Query: 157 ERPYECKEVCGRVFNRKDNLREHLRAH 183
E+P++CKE CG F+ +L +HLR+H
Sbjct: 10 EKPFQCKE-CGMNFSWSCSLFKHLRSH 35
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.138 0.436
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,219,349
Number of Sequences: 62578
Number of extensions: 970636
Number of successful extensions: 3642
Number of sequences better than 100.0: 202
Number of HSP's better than 100.0 without gapping: 191
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 1795
Number of HSP's gapped (non-prelim): 1467
length of query: 831
length of database: 14,973,337
effective HSP length: 107
effective length of query: 724
effective length of database: 8,277,491
effective search space: 5992903484
effective search space used: 5992903484
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 56 (26.2 bits)