RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy11980
(831 letters)
>gnl|CDD|214780 smart00702, P4Hc, Prolyl 4-hydroxylase alpha subunit homologues.
Mammalian enzymes catalyse hydroxylation of collagen,
for example. Prokaryotic enzymes might catalyse
hydroxylation of antibiotic peptides. These are
2-oxoglutarate-dependent dioxygenases, requiring
2-oxoglutarate and dioxygen as cosubstrates and ferrous
iron as a cofactor.
Length = 165
Score = 58.6 bits (142), Expect = 6e-10
Identities = 27/111 (24%), Positives = 39/111 (35%), Gaps = 8/111 (7%)
Query: 715 SNIGRLISEVDAIIMRANRMVNNGRMGDFVINGRTKQNGGLLRIFPEGGGDKVAD-IEPM 773
+ +L+ E + + R + + +Q+ G D V + I
Sbjct: 3 AECQKLLEEAEPLGWRG-EVTRGIGNPNETSQ--YRQSNGTW--LELLERDLVIERIRQR 57
Query: 774 FDRIL-FFWSDRRNPHEAMVACYPGHGSHYVKHVDNPNRDGRCITAIYYLN 823
L + +A VA Y G G HY HVDN R T I YLN
Sbjct: 58 LADFLGLLAGLPLSAEDAQVARY-GPGGHYGPHVDNFLYGDRIATFILYLN 107
Score = 38.9 bits (91), Expect = 0.003
Identities = 12/40 (30%), Positives = 16/40 (40%), Gaps = 2/40 (5%)
Query: 753 GGLLRIFPEGGGDKVADIEPMFDRILFFWS-DRRNPHEAM 791
GG L VA ++P +LFF S R+ H
Sbjct: 112 GGELVFPGLRL-MVVATVKPKKGDLLFFPSGHGRSLHGVC 150
>gnl|CDD|201954 pfam01753, zf-MYND, MYND finger.
Length = 39
Score = 52.0 bits (125), Expect = 6e-09
Identities = 17/33 (51%), Positives = 20/33 (60%)
Query: 423 GEENLLRCSKCKVTFYCSKQHQTLDWKAHKINC 455
LLRCS+CK +YCSK+ Q DW HK C
Sbjct: 7 EALKLLRCSRCKSVYYCSKECQKADWPYHKKEC 39
>gnl|CDD|177301 PHA00733, PHA00733, hypothetical protein.
Length = 128
Score = 46.0 bits (109), Expect = 7e-06
Identities = 21/55 (38%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 327 VKPHKCPICTKGFTMKSSLKIHLLTHTKEPPKSCEVCGRAFIRQDCLIRHLRQKH 381
V P+ CP+C F+ SLK H+ E K C VCG+ F D + H+ +KH
Sbjct: 71 VSPYVCPLCLMPFSSSVSLKQHI--RYTEHSKVCPVCGKEFRNTDSTLDHVCKKH 123
Score = 30.6 bits (69), Expect = 1.2
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 7/51 (13%)
Query: 132 YECDICKNRFPSSGAMKKHRR--KHTGERPYECKEVCGRVFNRKDNLREHL 180
Y C +C F SS ++K+H R +H+ P VCG+ F D+ +H+
Sbjct: 74 YVCPLCLMPFSSSVSLKQHIRYTEHSKVCP-----VCGKEFRNTDSTLDHV 119
>gnl|CDD|227381 COG5048, COG5048, FOG: Zn-finger [General function prediction
only].
Length = 467
Score = 48.2 bits (114), Expect = 1e-05
Identities = 41/168 (24%), Positives = 63/168 (37%), Gaps = 16/168 (9%)
Query: 221 TCYARFAAKETLNRHMKT--HSG--VKPHVC--EYCEKAFIQASQLKAHMFHHTGENGHT 274
C F+ L RH+++ HSG +KP C C K F + LK H+ HT +
Sbjct: 294 QCNISFSRSSPLTRHLRSVNHSGESLKPFSCPYSLCGKLFSRNDALKRHILLHTSISPAK 353
Query: 275 CEL--CNKTFNRKA----RLELHMKYIHEGADPYQCD--ICRKTFIRKEDLTRHCLLHTG 326
+L + F+ L + + C + F R +L+ H + H
Sbjct: 354 EKLLNSSSKFSPLLNNEPPQSLQQYKDLKNDKKSETLSNSCIRNFKRDSNLSLHIITHLS 413
Query: 327 VKPH--KCPICTKGFTMKSSLKIHLLTHTKEPPKSCEVCGRAFIRQDC 372
+P+ K P C+K F +L H HT P C + D
Sbjct: 414 FRPYNCKNPPCSKSFNRHYNLIPHKKIHTNHAPLLCSILKSFRRDLDL 461
Score = 43.1 bits (101), Expect = 4e-04
Identities = 40/257 (15%), Positives = 73/257 (28%), Gaps = 20/257 (7%)
Query: 328 KPHKCPICTKGFTMKSSLKIHLLTHTKEPPKSCEVCGRA--FIRQDCLIRHLRQKHRSHL 385
+P CP CT F+ L H+ +HT E P C G F R L RHLR H +
Sbjct: 32 RPDSCPNCTDSFSRLEHLTRHIRSHTGEKPSQCSYSGCDKSFSRPLELSRHLRTHHNNPS 91
Query: 386 DEVLAQGDKKKLEAQLLAAAATELTSVLEDGEEEGDEGEENLLRCSKCKVTFYCSKQHQT 445
D +A + +++ S + + Q
Sbjct: 92 DLNSKSLPLSNSKASSSSLSSSSSNSNDNNLLSSHSLPPSSRDP------------QLPD 139
Query: 446 LDWKAHKINCNILSNQSATNNTSLANNTPQVAQIQNQFPLSNQYFHEGSSENEIANSTVQ 505
L ++ N + N S++ NT +N+ + + S N +
Sbjct: 140 LLSISNLRNNPLPGNNSSSVNTPQSNSLHPPLPANSLSKDPSSNLSLLISSNVSTSIPSS 199
Query: 506 YLNPSLFQNNTPNQLVDTAGTSRAPGPSNMNTQYGLYSDIPILNENNGQNNLTNMHLDTN 565
N L + + + + T L + + ++ +
Sbjct: 200 SENSPLSSSYSIPSSSSDQNLENSSSSLPLTTNSQLSPKSLLSQSPSSLSS------SDS 253
Query: 566 VVVVPPFHHTNNDRVHS 582
++ S
Sbjct: 254 SSSASESPRSSLPTASS 270
Score = 41.6 bits (97), Expect = 0.001
Identities = 27/92 (29%), Positives = 40/92 (43%), Gaps = 6/92 (6%)
Query: 301 PYQCDICRKTFIRKEDLTRH--CLLHTG--VKPHKCPI--CTKGFTMKSSLKIHLLTHTK 354
P + C +F R LTRH + H+G +KP CP C K F+ +LK H+L HT
Sbjct: 289 PIKSKQCNISFSRSSPLTRHLRSVNHSGESLKPFSCPYSLCGKLFSRNDALKRHILLHTS 348
Query: 355 EPPKSCEVCGRAFIRQDCLIRHLRQKHRSHLD 386
P ++ + L Q + + D
Sbjct: 349 ISPAKEKLLNSSSKFSPLLNNEPPQSLQQYKD 380
Score = 35.1 bits (80), Expect = 0.14
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 128 AEKLYECDICKNRFPSSGAMKKHRRKHTGERPYECKEV-CGRVFNRKDNLREHLRAH 183
A + C C + F + +H R HTGE+P +C C + F+R L HLR H
Sbjct: 30 APRPDSCPNCTDSFSRLEHLTRHIRSHTGEKPSQCSYSGCDKSFSRPLELSRHLRTH 86
Score = 34.7 bits (79), Expect = 0.21
Identities = 38/155 (24%), Positives = 59/155 (38%), Gaps = 17/155 (10%)
Query: 43 HLCKGCYRIFTSQG-----YMLLSYKSKEEEKQICTYIKVCGRVFNRKDNLREHLRAHAG 97
K C F+ +++ + + C Y CG++F+R D L+ H+ H
Sbjct: 290 IKSKQCNISFSRSSPLTRHLRSVNHSGESLKPFSCPYSL-CGKLFSRNDALKRHILLHTS 348
Query: 98 ETKRKKKFKCDKCEKQFYGL------TLLRIHERLHAEKLYECD--ICKNRFPSSGAMKK 149
+ K+K +F L L+ ++ L +K E C F +
Sbjct: 349 ISPAKEKL--LNSSSKFSPLLNNEPPQSLQQYKDLKNDKKSETLSNSCIRNFKRDSNLSL 406
Query: 150 HRRKHTGERPYECKE-VCGRVFNRKDNLREHLRAH 183
H H RPY CK C + FNR NL H + H
Sbjct: 407 HIITHLSFRPYNCKNPPCSKSFNRHYNLIPHKKIH 441
Score = 34.7 bits (79), Expect = 0.24
Identities = 21/132 (15%), Positives = 38/132 (28%), Gaps = 10/132 (7%)
Query: 243 KPHVCEYCEKAFIQASQLKAHMFHHTGENGHTCELCNKTFNRKARLEL--HMKYIHEGAD 300
+P C C +F + L H+ HTGE C + LEL H++ H
Sbjct: 32 RPDSCPNCTDSFSRLEHLTRHIRSHTGEKPSQCSYSGCDKSFSRPLELSRHLRTHHNNPS 91
Query: 301 PYQCDICRKTFIRKEDLTRHCLL----HTGVKPHKCPICTKGFTMKSSLKIHLLTHTKEP 356
D+ K+ L + + + + LL+ +
Sbjct: 92 ----DLNSKSLPLSNSKASSSSLSSSSSNSNDNNLLSSHSLPPSSRDPQLPDLLSISNLR 147
Query: 357 PKSCEVCGRAFI 368
+ +
Sbjct: 148 NNPLPGNNSSSV 159
Score = 32.7 bits (74), Expect = 0.90
Identities = 44/200 (22%), Positives = 69/200 (34%), Gaps = 31/200 (15%)
Query: 130 KLYECDICKNRFPSSGAMKKHRRK--HTGE--RPYEC-KEVCGRVFNRKDNLREHLRAHA 184
+ C F S + +H R H+GE +P+ C +CG++F+R D L+ H+ H
Sbjct: 288 LPIKSKQCNISFSRSSPLTRHLRSVNHSGESLKPFSCPYSLCGKLFSRNDALKRHILLHT 347
Query: 185 GETKRKKKFKCDKCEKQFYGLTLLRIHERLHGLIERTCYARFAAKETLNRHMKTHSGVKP 244
+ K+K +F L + L K K
Sbjct: 348 SISPAKEKL--LNSSSKFSPLLNNEPPQSLQ-------------------QYKDLKNDKK 386
Query: 245 HVCEY--CEKAFIQASQLKAHMFHHTGENGHTCE--LCNKTFNRKARLELHMKYIHEGAD 300
C + F + S L H+ H + C+ C+K+FNR L H K A
Sbjct: 387 SETLSNSCIRNFKRDSNLSLHIITHLSFRPYNCKNPPCSKSFNRHYNLIPHKKIHTNHA- 445
Query: 301 PYQCDICRKTFIRKEDLTRH 320
P C I + +
Sbjct: 446 PLLCSILKSFRRDLDLSNHG 465
Score = 30.0 bits (67), Expect = 6.5
Identities = 28/151 (18%), Positives = 45/151 (29%), Gaps = 3/151 (1%)
Query: 221 TCYARFAAKETLNRHMKTHSGVKPHVCEY--CEKAFIQASQLKAHMFHHTGENGHTCELC 278
C F+ E L RH+++H+G KP C Y C+K+F + +L H+ H
Sbjct: 38 NCTDSFSRLEHLTRHIRSHTGEKPSQCSYSGCDKSFSRPLELSRHLRTHHNNPSDLNSKS 97
Query: 279 NKTFNRKARLELHMKYIHEGADPYQCDICRKTFIRKEDLTRHCLLHTGVKPHKCPICTKG 338
N KA D ++ L + ++ + P
Sbjct: 98 LPLSNSKASSSSLSSSSSNSNDNNLLSSHSLPPSSRDPQLPDLLSISNLRNNPLPGNNSS 157
Query: 339 FT-MKSSLKIHLLTHTKEPPKSCEVCGRAFI 368
S +H K I
Sbjct: 158 SVNTPQSNSLHPPLPANSLSKDPSSNLSLLI 188
>gnl|CDD|222150 pfam13465, zf-H2C2_2, Zinc-finger double domain.
Length = 26
Score = 38.9 bits (91), Expect = 2e-04
Identities = 13/25 (52%), Positives = 17/25 (68%)
Query: 232 LNRHMKTHSGVKPHVCEYCEKAFIQ 256
L RHM+TH+G KP+ C C K+F
Sbjct: 2 LRRHMRTHTGEKPYKCPVCGKSFSS 26
Score = 36.6 bits (85), Expect = 0.001
Identities = 13/27 (48%), Positives = 20/27 (74%), Gaps = 1/27 (3%)
Query: 146 AMKKHRRKHTGERPYECKEVCGRVFNR 172
+++H R HTGE+PY+C VCG+ F+
Sbjct: 1 NLRRHMRTHTGEKPYKCP-VCGKSFSS 26
Score = 35.8 bits (83), Expect = 0.002
Identities = 14/25 (56%), Positives = 18/25 (72%)
Query: 316 DLTRHCLLHTGVKPHKCPICTKGFT 340
+L RH HTG KP+KCP+C K F+
Sbjct: 1 NLRRHMRTHTGEKPYKCPVCGKSFS 25
Score = 30.8 bits (70), Expect = 0.14
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 344 SLKIHLLTHTKEPPKSCEVCGRAFIR 369
+L+ H+ THT E P C VCG++F
Sbjct: 1 NLRRHMRTHTGEKPYKCPVCGKSFSS 26
Score = 30.4 bits (69), Expect = 0.18
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 260 LKAHMFHHTGENGHTCELCNKTFNR 284
L+ HM HTGE + C +C K+F+
Sbjct: 2 LRRHMRTHTGEKPYKCPVCGKSFSS 26
Score = 30.4 bits (69), Expect = 0.18
Identities = 14/28 (50%), Positives = 16/28 (57%), Gaps = 4/28 (14%)
Query: 87 NLREHLRAHAGETKRKKKFKCDKCEKQF 114
NLR H+R H GE K +KC C K F
Sbjct: 1 NLRRHMRTHTGE----KPYKCPVCGKSF 24
Score = 30.4 bits (69), Expect = 0.18
Identities = 14/28 (50%), Positives = 16/28 (57%), Gaps = 4/28 (14%)
Query: 175 NLREHLRAHAGETKRKKKFKCDKCEKQF 202
NLR H+R H GE K +KC C K F
Sbjct: 1 NLRRHMRTHTGE----KPYKCPVCGKSF 24
Score = 28.5 bits (64), Expect = 0.81
Identities = 11/26 (42%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Query: 288 LELHMKYIHEGADPYQCDICRKTFIR 313
L HM+ H G PY+C +C K+F
Sbjct: 2 LRRHMR-THTGEKPYKCPVCGKSFSS 26
Score = 26.6 bits (59), Expect = 4.1
Identities = 11/23 (47%), Positives = 13/23 (56%), Gaps = 1/23 (4%)
Query: 120 LRIHERLH-AEKLYECDICKNRF 141
LR H R H EK Y+C +C F
Sbjct: 2 LRRHMRTHTGEKPYKCPVCGKSF 24
>gnl|CDD|222280 pfam13640, 2OG-FeII_Oxy_3, 2OG-Fe(II) oxygenase superfamily. This
family contains members of the 2-oxoglutarate (2OG) and
Fe(II)-dependent oxygenase superfamily.
Length = 93
Score = 38.2 bits (89), Expect = 0.001
Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Query: 790 AMVACYPGHGSHYVKHVDNPNRDGRCITAIYYLNRDWD 827
A ++ Y G H DN ++ R +T + YLN DW
Sbjct: 1 AGLSRYR-PGGFLGPHTDN-SKGERRVTLLLYLNDDWW 36
Score = 36.2 bits (84), Expect = 0.007
Identities = 12/39 (30%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
Query: 753 GGLLRIFPEGGGDKVADIEPMFDRILFFWSDRRNPHEAM 791
GG L ++P G V I P R++ F S + H
Sbjct: 40 GGELELYPSDDGGVVRVIAPKPGRLVLFRSG-NSLHGVT 77
>gnl|CDD|226274 COG3751, EGL-9, Predicted proline hydroxylase [Posttranslational
modification, protein turnover, chaperones].
Length = 252
Score = 40.1 bits (94), Expect = 0.002
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Query: 789 EAMVACYPGHGSHYVKHVDN-PNRDGRCITAIYYLNRDW 826
E + Y G +KH DN ++D R T +YYL R+W
Sbjct: 137 EGQITVYN-PGCFLLKHDDNGRDKDIRLATYVYYLTREW 174
Score = 28.9 bits (65), Expect = 8.9
Identities = 14/48 (29%), Positives = 19/48 (39%), Gaps = 8/48 (16%)
Query: 753 GGLLRIFPEG-----GGDKVADIEPMFDRILFFWSDRRNPHEAM-VAC 794
GG LR+F D I P+F+ ++FF S H V
Sbjct: 179 GGELRLFHSLQKNNTAADSFKTIAPVFNSLVFFKSRPS--HSVHSVEE 224
>gnl|CDD|227561 COG5236, COG5236, Uncharacterized conserved protein, contains RING
Zn-finger [General function prediction only].
Length = 493
Score = 35.8 bits (82), Expect = 0.10
Identities = 34/121 (28%), Positives = 44/121 (36%), Gaps = 6/121 (4%)
Query: 84 RKDNLREHLRAHAGETKRKKKFKCDKCEKQFYGLTLLRIHERLHAEKLYECD----ICKN 139
R LR+H E K C C+ FY LR H RL E + CD I
Sbjct: 200 RSSTLRDHKNGGLEEEGFKGHPLCIFCKIYFYDDDELRRHCRLRHEACHICDMVGPIRYQ 259
Query: 140 RFPSSGAMKKHRRK-HTGERPYECKEVCGRVFNRKDNLREHL-RAHAGETKRKKKFKCDK 197
F S ++ H R H C+ VF L EHL R H + + + +
Sbjct: 260 YFKSYEDLEAHFRNAHYCCTFQTCRVGKCYVFPYHTELLEHLTRFHKVNARLSEIPRPGR 319
Query: 198 C 198
C
Sbjct: 320 C 320
Score = 32.7 bits (74), Expect = 0.82
Identities = 33/143 (23%), Positives = 48/143 (33%), Gaps = 30/143 (20%)
Query: 104 KFKC--DKCEKQFYGLTLLRIHERLHAEKLYECDICKNRFPSSGAMKKHRRKHTGERPYE 161
FKC KC ++ L L+ H + + C C +++ E
Sbjct: 151 SFKCPKSKCHRRCGSLKELKKHYKAQHGFVL-CSECI----------GNKKDFWNEI--- 196
Query: 162 CKEVCGRVFNRKDNLREHLRAHAGETKRKKKFKCDKCEKQFYGLTLLRI-----HERLH- 215
R+F R LR+H E K C C+ FY LR HE H
Sbjct: 197 ------RLF-RSSTLRDHKNGGLEEEGFKGHPLCIFCKIYFYDDDELRRHCRLRHEACHI 249
Query: 216 -GLIERTCYARFAAKETLNRHMK 237
++ Y F + E L H +
Sbjct: 250 CDMVGPIRYQYFKSYEDLEAHFR 272
>gnl|CDD|200998 pfam00096, zf-C2H2, Zinc finger, C2H2 type. The C2H2 zinc finger
is the classical zinc finger domain. The two conserved
cysteines and histidines co-ordinate a zinc ion. The
following pattern describes the zinc finger.
#-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can
be any amino acid, and numbers in brackets indicate the
number of residues. The positions marked # are those
that are important for the stable fold of the zinc
finger. The final position can be either his or cys. The
C2H2 zinc finger is composed of two short beta strands
followed by an alpha helix. The amino terminal part of
the helix binds the major groove in DNA binding zinc
fingers. The accepted consensus binding sequence for Sp1
is usually defined by the asymmetric hexanucleotide core
GGGCGG but this sequence does not include, among others,
the GAG (=CTC) repeat that constitutes a high-affinity
site for Sp1 binding to the wt1 promoter.
Length = 22
Score = 31.2 bits (71), Expect = 0.10
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 303 QCDICRKTFIRKEDLTRHCLLH 324
+C C K+F RK +L RH H
Sbjct: 1 KCPDCGKSFSRKSNLKRHLRTH 22
Score = 31.2 bits (71), Expect = 0.11
Identities = 14/22 (63%), Positives = 16/22 (72%)
Query: 331 KCPICTKGFTMKSSLKIHLLTH 352
KCP C K F+ KS+LK HL TH
Sbjct: 1 KCPDCGKSFSRKSNLKRHLRTH 22
Score = 29.2 bits (66), Expect = 0.48
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 246 VCEYCEKAFIQASQLKAHMFHH 267
C C K+F + S LK H+ H
Sbjct: 1 KCPDCGKSFSRKSNLKRHLRTH 22
Score = 29.2 bits (66), Expect = 0.52
Identities = 11/20 (55%), Positives = 14/20 (70%)
Query: 164 EVCGRVFNRKDNLREHLRAH 183
CG+ F+RK NL+ HLR H
Sbjct: 3 PDCGKSFSRKSNLKRHLRTH 22
Score = 29.2 bits (66), Expect = 0.53
Identities = 11/20 (55%), Positives = 14/20 (70%)
Query: 76 KVCGRVFNRKDNLREHLRAH 95
CG+ F+RK NL+ HLR H
Sbjct: 3 PDCGKSFSRKSNLKRHLRTH 22
Score = 27.3 bits (61), Expect = 2.6
Identities = 10/20 (50%), Positives = 13/20 (65%)
Query: 359 SCEVCGRAFIRQDCLIRHLR 378
C CG++F R+ L RHLR
Sbjct: 1 KCPDCGKSFSRKSNLKRHLR 20
Score = 26.9 bits (60), Expect = 3.0
Identities = 8/20 (40%), Positives = 14/20 (70%)
Query: 274 TCELCNKTFNRKARLELHMK 293
C C K+F+RK+ L+ H++
Sbjct: 1 KCPDCGKSFSRKSNLKRHLR 20
Score = 26.5 bits (59), Expect = 4.6
Identities = 7/22 (31%), Positives = 10/22 (45%)
Query: 133 ECDICKNRFPSSGAMKKHRRKH 154
+C C F +K+H R H
Sbjct: 1 KCPDCGKSFSRKSNLKRHLRTH 22
>gnl|CDD|197676 smart00355, ZnF_C2H2, zinc finger.
Length = 23
Score = 30.5 bits (69), Expect = 0.19
Identities = 11/23 (47%), Positives = 16/23 (69%)
Query: 330 HKCPICTKGFTMKSSLKIHLLTH 352
++CP C K F KS+L+ H+ TH
Sbjct: 1 YRCPECGKVFKSKSALREHMRTH 23
Score = 30.1 bits (68), Expect = 0.20
Identities = 9/23 (39%), Positives = 10/23 (43%)
Query: 302 YQCDICRKTFIRKEDLTRHCLLH 324
Y+C C K F K L H H
Sbjct: 1 YRCPECGKVFKSKSALREHMRTH 23
Score = 29.7 bits (67), Expect = 0.32
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 132 YECDICKNRFPSSGAMKKHRRKH 154
Y C C F S A+++H R H
Sbjct: 1 YRCPECGKVFKSKSALREHMRTH 23
Score = 29.0 bits (65), Expect = 0.67
Identities = 13/24 (54%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
Query: 160 YECKEVCGRVFNRKDNLREHLRAH 183
Y C CG+VF K LREH+R H
Sbjct: 1 YRC-PECGKVFKSKSALREHMRTH 23
Score = 28.6 bits (64), Expect = 0.80
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 273 HTCELCNKTFNRKARLELHMK 293
+ C C K F K+ L HM+
Sbjct: 1 YRCPECGKVFKSKSALREHMR 21
Score = 28.6 bits (64), Expect = 0.88
Identities = 9/23 (39%), Positives = 11/23 (47%)
Query: 245 HVCEYCEKAFIQASQLKAHMFHH 267
+ C C K F S L+ HM H
Sbjct: 1 YRCPECGKVFKSKSALREHMRTH 23
Score = 27.4 bits (61), Expect = 2.3
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 76 KVCGRVFNRKDNLREHLRAH 95
CG+VF K LREH+R H
Sbjct: 4 PECGKVFKSKSALREHMRTH 23
Score = 25.9 bits (57), Expect = 7.6
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 105 FKCDKCEKQFYGLTLLRIHERLH 127
++C +C K F + LR H R H
Sbjct: 1 YRCPECGKVFKSKSALREHMRTH 23
Score = 25.9 bits (57), Expect = 7.6
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 193 FKCDKCEKQFYGLTLLRIHERLH 215
++C +C K F + LR H R H
Sbjct: 1 YRCPECGKVFKSKSALREHMRTH 23
>gnl|CDD|240014 cd04643, CBS_pair_30, The CBS domain, named after human CBS, is a
small domain originally identified in cystathionine
beta-synthase and is subsequently found in a wide range
of different proteins. CBS domains usually occur in
tandem repeats. They associate to form a so-called
Bateman domain or a CBS pair based on crystallographic
studies in bacteria. The CBS pair was used as a basis
for this cd hierarchy since the human CBS proteins can
adopt the typical core structure and form an
intramolecular CBS pair. The interface between the two
CBS domains forms a cleft that is a potential ligand
binding site. The CBS pair coexists with a variety of
other functional domains and this has been used to help
in its classification here. It has been proposed that
the CBS domain may play a regulatory role, although its
exact function is unknown. Mutations of conserved
residues within this domain are associated with a
variety of human hereditary diseases, including
congenital myotonia, idiopathic generalized epilepsy,
hypercalciuric nephrolithiasis, and classic Bartter
syndrome (CLC chloride channel family members),
Wolff-Parkinson-White syndrome (gamma 2 subunit of
AMP-activated protein kinase), retinitis pigmentosa (IMP
dehydrogenase-1), and homocystinuria (cystathionine
beta-synthase).
Length = 116
Score = 31.8 bits (73), Expect = 0.38
Identities = 25/91 (27%), Positives = 40/91 (43%), Gaps = 21/91 (23%)
Query: 537 TQYGLYSDIPILNEN-------------NGQNNLTNMHL-DTNVVVVPPFHHTNNDRVHS 582
T++G YS IP+L++ L N+ L + V +T+ +
Sbjct: 20 TKHG-YSAIPVLDKEGKYVGTISLTDILWKLKGLENLDLERLVDLKVIDVMNTDVPVIID 78
Query: 583 DIMIEKMCHNVIRDMDQYGLCVLDD---FLG 610
D IE++ H +I DQ L V+DD F+G
Sbjct: 79 DADIEEILHLLI---DQPFLPVVDDDGIFIG 106
>gnl|CDD|222297 pfam13661, 2OG-FeII_Oxy_4, 2OG-Fe(II) oxygenase superfamily. This
family contains members of the 2-oxoglutarate (2OG) and
Fe(II)-dependent oxygenase superfamily.
Length = 65
Score = 30.5 bits (69), Expect = 0.42
Identities = 11/31 (35%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 797 GHGSHYVKHVDNPNRDGRCITAIYYLNRDWD 827
G + H+D + R ++A+ YLN DWD
Sbjct: 18 RRGDFFGPHIDADPEELRDLSALLYLN-DWD 47
>gnl|CDD|227516 COG5189, SFP1, Putative transcriptional repressor regulating G2/M
transition [Transcription / Cell division and chromosome
partitioning].
Length = 423
Score = 33.5 bits (76), Expect = 0.43
Identities = 21/84 (25%), Positives = 33/84 (39%), Gaps = 7/84 (8%)
Query: 187 TKRKKKFKCD--KCEKQFYGLTLLRIHERLHGLIERTCYARFAAKETLNRHMKTHSGVKP 244
K K +KC C K++ L+ H LHG + + + + KP
Sbjct: 344 VKDGKPYKCPVEGCNKKYKNQNGLKYH-MLHG----HQNQKLHENPSPEKMNIFSAKDKP 398
Query: 245 HVCEYCEKAFIQASQLKAHMFHHT 268
+ CE C+K + + LK H H
Sbjct: 399 YRCEVCDKRYKNLNGLKYHRKHSH 422
Score = 33.2 bits (75), Expect = 0.59
Identities = 17/89 (19%), Positives = 32/89 (35%), Gaps = 12/89 (13%)
Query: 262 AHMFHHTGENGHTCEL--CNKTFNRKARLELHMKYIHEGADPYQCDICRKTFIRKEDLTR 319
+ M + C + CNK + + L+ HM + H + +
Sbjct: 339 SRMLKVKDGKPYKCPVEGCNKKYKNQNGLKYHMLHGH----------QNQKLHENPSPEK 388
Query: 320 HCLLHTGVKPHKCPICTKGFTMKSSLKIH 348
+ KP++C +C K + + LK H
Sbjct: 389 MNIFSAKDKPYRCEVCDKRYKNLNGLKYH 417
Score = 31.2 bits (70), Expect = 2.1
Identities = 20/77 (25%), Positives = 30/77 (38%), Gaps = 21/77 (27%)
Query: 326 GVKPHKCPI--CTKGFTMKSSLKIHLL--------THTKEP-----------PKSCEVCG 364
KP+KCP+ C K + ++ LK H+L P P CEVC
Sbjct: 346 DGKPYKCPVEGCNKKYKNQNGLKYHMLHGHQNQKLHENPSPEKMNIFSAKDKPYRCEVCD 405
Query: 365 RAFIRQDCLIRHLRQKH 381
+ + + L H + H
Sbjct: 406 KRYKNLNGLKYHRKHSH 422
Score = 29.3 bits (65), Expect = 9.6
Identities = 20/77 (25%), Positives = 29/77 (37%), Gaps = 21/77 (27%)
Query: 241 GVKPHVCEY--CEKAFIQASQLKAHMFH-HTGENGHT------------------CELCN 279
KP+ C C K + + LK HM H H + H CE+C+
Sbjct: 346 DGKPYKCPVEGCNKKYKNQNGLKYHMLHGHQNQKLHENPSPEKMNIFSAKDKPYRCEVCD 405
Query: 280 KTFNRKARLELHMKYIH 296
K + L+ H K+ H
Sbjct: 406 KRYKNLNGLKYHRKHSH 422
>gnl|CDD|206065 pfam13894, zf-C2H2_4, C2H2-type zinc finger. This family contains
a number of divergent C2H2 type zinc fingers.
Length = 24
Score = 29.1 bits (65), Expect = 0.60
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 302 YQCDICRKTFIRKEDLTRHCLLH 324
++C +C K+F K+ L RH H
Sbjct: 1 FKCPLCGKSFSSKDALKRHLRKH 23
Score = 28.0 bits (62), Expect = 1.2
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 132 YECDICKNRFPSSGAMKKHRRKH 154
++C +C F S A+K+H RKH
Sbjct: 1 FKCPLCGKSFSSKDALKRHLRKH 23
Score = 28.0 bits (62), Expect = 1.3
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 273 HTCELCNKTFNRKARLELHMKYIH 296
C LC K+F+ K L+ H++ H
Sbjct: 1 FKCPLCGKSFSSKDALKRHLRKHH 24
Score = 27.6 bits (61), Expect = 2.1
Identities = 12/23 (52%), Positives = 15/23 (65%)
Query: 330 HKCPICTKGFTMKSSLKIHLLTH 352
KCP+C K F+ K +LK HL H
Sbjct: 1 FKCPLCGKSFSSKDALKRHLRKH 23
Score = 26.8 bits (59), Expect = 3.8
Identities = 11/24 (45%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
Query: 160 YECKEVCGRVFNRKDNLREHLRAH 183
++C +CG+ F+ KD L+ HLR H
Sbjct: 1 FKCP-LCGKSFSSKDALKRHLRKH 23
Score = 26.4 bits (58), Expect = 5.6
Identities = 11/22 (50%), Positives = 16/22 (72%)
Query: 360 CEVCGRAFIRQDCLIRHLRQKH 381
C +CG++F +D L RHLR+ H
Sbjct: 3 CPLCGKSFSSKDALKRHLRKHH 24
Score = 26.1 bits (57), Expect = 7.6
Identities = 10/20 (50%), Positives = 14/20 (70%)
Query: 76 KVCGRVFNRKDNLREHLRAH 95
+CG+ F+ KD L+ HLR H
Sbjct: 4 PLCGKSFSSKDALKRHLRKH 23
>gnl|CDD|178473 PLN02885, PLN02885, nicotinate phosphoribosyltransferase.
Length = 545
Score = 32.3 bits (74), Expect = 1.1
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 4/46 (8%)
Query: 23 NRTRGLLNEDDAVGEKTVPGHLCKGCYRIFTSQGYMLLSYKSKEEE 68
+ R L+ED V + T+P K CYR++ +GY L+ + E E
Sbjct: 401 GQPRIKLSED--VEKVTIPC--KKRCYRLYGKEGYPLVDLMTGENE 442
>gnl|CDD|223571 COG0497, RecN, ATPase involved in DNA repair [DNA replication,
recombination, and repair].
Length = 557
Score = 32.6 bits (75), Expect = 1.1
Identities = 20/116 (17%), Positives = 45/116 (38%), Gaps = 5/116 (4%)
Query: 375 RHLRQKHRSHLDEVLAQGDKKKLEAQLLAAAATELTSV-LEDGEEEGDEGEENLLRCSKC 433
+ +Q R L+++ + ++ A LL EL + L+ GE+E E E L +
Sbjct: 164 QAWKQA-RRELEDLQEKERERAQRADLLQFQLEELEELNLQPGEDEELEEERKRL-SNSE 221
Query: 434 KVTFYCSKQHQTLDWKAHKINCNILSNQSATNNTSLANNTPQVAQIQNQFPLSNQY 489
K+ + L + ++ L ++ L+ +++++ L
Sbjct: 222 KLAEAIQNALELLSGEDDTVSALSLLGRALEALEDLSEYDGKLSELAEL--LEEAL 275
>gnl|CDD|226202 COG3677, COG3677, Transposase and inactivated derivatives [DNA
replication, recombination, and repair].
Length = 129
Score = 30.8 bits (70), Expect = 1.2
Identities = 25/115 (21%), Positives = 34/115 (29%), Gaps = 23/115 (20%)
Query: 111 EKQFYGLTLLRIHERLHAEKLYECDICK--NRFPSSGAMKKHRRKHTGERPYECKEVCGR 168
+ + L R+ K+ C CK N G + H+R Y+CK CG
Sbjct: 11 KLKSIALADAAYAIRMQITKVN-CPRCKSSNVVKIGGIRRGHQR-------YKCKS-CGS 61
Query: 169 VFNRKDNLREHLRAHAGETKRKKKFKCDKCEKQFYGLTLLR--IHERLHGLIERT 221
F + G K +K Y L L I L I
Sbjct: 62 TFTVET----------GSPLSKALYKIKLQAVTLYMLGLGIRDIARTLGISINTV 106
>gnl|CDD|180567 PRK06452, sdhA, succinate dehydrogenase flavoprotein subunit;
Reviewed.
Length = 566
Score = 31.8 bits (72), Expect = 1.6
Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 10/68 (14%)
Query: 59 LLSYKSKEEEKQICTYIKVCGRVFNRKDNLREHLRAHAGETKRKKKFKCDKCEKQFYGLT 118
LLS KS E I ++ G +FNR+ + R +R G+T + +F DK G+
Sbjct: 87 LLSNKSGE----IVMLLERWGALFNRQPDGRVAVRYFGGQTYPRTRFVGDKT-----GMA 137
Query: 119 LLR-IHER 125
LL + ER
Sbjct: 138 LLHTLFER 145
>gnl|CDD|238371 cd00729, rubredoxin_SM, Rubredoxin, Small Modular nonheme iron
binding domain containing a [Fe(SCys)4] center, present
in rubrerythrin and nigerythrin and detected either N-
or C-terminal to such proteins as flavin reductase,
NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin
reductase. In rubredoxin, the iron atom is coordinated
by four cysteine residues (Fe(S-Cys)4), and believed to
be involved in electron transfer. Rubrerythrins and
nigerythrins are small homodimeric proteins, generally
consisting of 2 domains: a rubredoxin domain C-terminal
to a non-sulfur, oxo-bridged diiron site in the
N-terminal rubrerythrin domain. Rubrerythrins and
nigerythrins have putative peroxide activity.
Length = 34
Score = 27.9 bits (63), Expect = 1.9
Identities = 9/35 (25%), Positives = 15/35 (42%), Gaps = 12/35 (34%)
Query: 330 HKCPICTKGFTMKSSLKIHLLTHTKEPPKSCEVCG 364
CP+C G+ + +E P+ C +CG
Sbjct: 3 WVCPVC--GYIHEG----------EEAPEKCPICG 25
>gnl|CDD|204841 pfam12171, zf-C2H2_jaz, Zinc-finger double-stranded RNA-binding.
This domain family is found in archaea and eukaryotes,
and is approximately 30 amino acids in length. The
mammalian members of this group occur multiple times
along the protein, joined by flexible linkers, and are
referred to as JAZ - dsRNA-binding ZF protein -
zinc-fingers. The JAZ proteins are expressed in all
tissues tested and localise in the nucleus, particularly
the nucleolus. JAZ preferentially binds to
double-stranded (ds) RNA or RNA/DNA hybrids rather than
DNA. In addition to binding double-stranded RNA, these
zinc-fingers are required for nucleolar localisation.
Length = 27
Score = 27.5 bits (62), Expect = 1.9
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 273 HTCELCNKTFNRKARLELHMK 293
C C+K F + LE H+K
Sbjct: 2 FYCVACDKYFKSENALENHLK 22
Score = 26.4 bits (59), Expect = 5.5
Identities = 6/21 (28%), Positives = 10/21 (47%)
Query: 244 PHVCEYCEKAFIQASQLKAHM 264
C C+K F + L+ H+
Sbjct: 1 QFYCVACDKYFKSENALENHL 21
>gnl|CDD|181996 PRK09619, flgD, flagellar basal body rod modification protein;
Reviewed.
Length = 218
Score = 30.9 bits (70), Expect = 2.0
Identities = 12/29 (41%), Positives = 12/29 (41%), Gaps = 2/29 (6%)
Query: 459 SNQSATNNTSLANN--TPQVAQIQNQFPL 485
L N T VAQIQNQ PL
Sbjct: 19 PEGGLPGAEQLNNQFMTLLVAQIQNQDPL 47
>gnl|CDD|205121 pfam12874, zf-met, Zinc-finger of C2H2 type. This is a zinc-finger
domain with the CxxCx(12)Hx(6)H motif, found in multiple
copies in a wide range of proteins from plants to
metazoans. Some member proteins, particularly those from
plants, are annotated as being RNA-binding.
Length = 25
Score = 27.5 bits (62), Expect = 2.0
Identities = 9/21 (42%), Positives = 15/21 (71%)
Query: 273 HTCELCNKTFNRKARLELHMK 293
CELCN TF +++L+ H++
Sbjct: 1 FYCELCNVTFTSESQLKSHLR 21
>gnl|CDD|206083 pfam13912, zf-C2H2_6, C2H2-type zinc finger.
Length = 27
Score = 27.6 bits (62), Expect = 2.1
Identities = 7/24 (29%), Positives = 13/24 (54%)
Query: 131 LYECDICKNRFPSSGAMKKHRRKH 154
++ C +C F S A+ H++ H
Sbjct: 1 VHTCGVCGKTFSSLQALGGHKKSH 24
Score = 26.4 bits (59), Expect = 4.2
Identities = 8/24 (33%), Positives = 13/24 (54%), Gaps = 1/24 (4%)
Query: 160 YECKEVCGRVFNRKDNLREHLRAH 183
+ C VCG+ F+ L H ++H
Sbjct: 2 HTCG-VCGKTFSSLQALGGHKKSH 24
>gnl|CDD|131199 TIGR02144, LysX_arch, Lysine biosynthesis enzyme LysX. The family
of proteins found in this equivalog include the
characterized LysX from Thermus thermophilus which is
part of a well-organized lysine biosynthesis gene
cluster. LysX is believed to carry out an ATP-dependent
acylation of the amino group of alpha-aminoadipate in
the prokaryotic version of the fungal AAA lysine
biosynthesis pathway. No species having a sequence in
this equivalog contains the elements of the more common
diaminopimelate lysine biosythesis pathway, and none has
been shown to be a lysine auxotroph. These sequences
have mainly recieved the name of the related enzyme,
"ribosomal protein S6 modification protein RimK". RimK
has been characterized in E. coli, and acts by
ATP-dependent condensation of S6 with glutamate
residues.
Length = 280
Score = 30.8 bits (70), Expect = 2.3
Identities = 11/39 (28%), Positives = 17/39 (43%), Gaps = 8/39 (20%)
Query: 796 PGHGSHYVK-HVDNPNRDGRC-------ITAIYYLNRDW 826
H Y++ +++ P RD R I AIY + W
Sbjct: 160 SQHKLFYIQEYINKPGRDIRVFVIGDEAIAAIYRYSNHW 198
>gnl|CDD|197394 cd10159, CsoR-like_DUF156_2, Uncharacterized family 2; belongs to a
superfamily containing transcriptional regulators CsoR
(copper-sensitive operon repressor), RcnR, and FrmR, and
related domains; this family was previously known as
part of DUF156. Uncharacterized family 2, belonging to
a larger superfamily that contains various
transcriptional regulators that respond to different
stressors such as Cu(I), Ni(I), sulfite, and
formaldehyde, and includes CsoRs (copper-sensitive
operon repressors). CsoRs form homotetramers (dimer of
dimers). In Mycobacterium tuberculosis CsoR, within each
dimer, two Cys residues on opposite subunits, along with
a His residue, bind the Cu(I) ion (forming a triagonal
S2N coordination complex, C-H-C). These residues are
conserved in the majority of members of this
superfamily, including this family, and a conserved Tyr
and a Glu residue that facilitate allosteric regulation
of DNA binding for CsoRs are also conserved.
Length = 82
Score = 28.7 bits (65), Expect = 2.9
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 8/57 (14%)
Query: 689 KSTNKQDLKTIRGDQITWI-----DGRETYCSNIGRLISEVDAIIMRANRMVNNGRM 740
K + LKT RG QI I + R YC +I I A++ +AN+ + + M
Sbjct: 2 KKKALRLLKTARG-QIDGIIKMIEEDR--YCIDISNQILATQALLKKANKEILSAHM 55
>gnl|CDD|219584 pfam07800, DUF1644, Protein of unknown function (DUF1644). This
family consists of sequences found in a number of
hypothetical plant proteins of unknown function. The
region of interest contains nine highly conserved
cysteine residues and is approximately 160 amino acids
in length, and is probably a zinc-binding domain.
Length = 148
Score = 29.6 bits (67), Expect = 3.0
Identities = 24/104 (23%), Positives = 40/104 (38%), Gaps = 23/104 (22%)
Query: 296 HEGADPYQCDI------C----RKTFIRKEDLTRHCLLHTGVKPHKCPIC---TKGFTMK 342
+G PY CD C +K + +K + + + CP+C KG+T+
Sbjct: 24 DKGCRPYMCDTSHRHSNCLDQFKKAYSKKRNSGKDSEKEDSTELT-CPLCRGEVKGWTVV 82
Query: 343 SSLKIHLLTHTKEPPKSCEVCGRAFI---RQDCLIRHLRQKHRS 383
+ L +SC G +F R+ L +H R +H
Sbjct: 83 EPARRFL----NSKKRSCMQEGCSFSGTYRE--LRKHARSEHPG 120
>gnl|CDD|217403 pfam03171, 2OG-FeII_Oxy, 2OG-Fe(II) oxygenase superfamily. This
family contains members of the 2-oxoglutarate (2OG) and
Fe(II)-dependent oxygenase superfamily. This family
includes the C-terminal of prolyl 4-hydroxylase alpha
subunit. The holoenzyme has the activity EC:1.14.11.2
catalyzing the reaction: Procollagen L-proline +
2-oxoglutarate + O2 <=> procollagen trans-
4-hydroxy-L-proline + succinate + CO2. The full enzyme
consists of a alpha2 beta2 complex with the alpha
subunit contributing most of the parts of the active
site. The family also includes lysyl hydrolases,
isopenicillin synthases and AlkB.
Length = 96
Score = 28.9 bits (65), Expect = 3.2
Identities = 9/39 (23%), Positives = 12/39 (30%), Gaps = 6/39 (15%)
Query: 786 NPHEAMVACYP-GHGSHYVKHVDNPNRDGRCITAIYYLN 823
P +V YP G H D+ IT +
Sbjct: 1 TPEGLLVNYYPPDLGLGLGPHTDD-----SIITILLQDG 34
>gnl|CDD|221755 pfam12756, zf-C2H2_2, C2H2 type zinc-finger (2 copies). This
family contains two copies of a C2H2-like zinc finger
domain.
Length = 100
Score = 28.4 bits (64), Expect = 5.1
Identities = 14/70 (20%), Positives = 18/70 (25%), Gaps = 23/70 (32%)
Query: 247 CEYCEKAFIQASQLKAHMFHHTG-----------------------ENGHTCELCNKTFN 283
C +C + HMF G G+ C C K F
Sbjct: 2 CLFCNHTSDTVEENLEHMFKSHGFFIPEREYLVDLEGLLNYLREKIHEGNECLYCGKQFK 61
Query: 284 RKARLELHMK 293
L HM+
Sbjct: 62 SLEALRQHMR 71
>gnl|CDD|165133 PHA02768, PHA02768, hypothetical protein; Provisional.
Length = 55
Score = 26.5 bits (58), Expect = 7.8
Identities = 11/26 (42%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
Query: 360 CEVCGRAFIRQDCLIRHLRQKHRSHL 385
C +CG +I++ +I HLR KH ++L
Sbjct: 8 CPICGEIYIKRKSMITHLR-KHNTNL 32
>gnl|CDD|222400 pfam13824, zf-Mss51, Zinc-finger of mitochondrial splicing
suppressor 51. Mss51 regulates the expression of
cytochrome oxidase, so this domain is probably
DNA-binding.
Length = 55
Score = 26.6 bits (59), Expect = 7.9
Identities = 9/29 (31%), Positives = 16/29 (55%)
Query: 430 CSKCKVTFYCSKQHQTLDWKAHKINCNIL 458
C C + +CS++H D++ H+ C L
Sbjct: 17 CPDCGIPTHCSEEHWEDDYEEHRELCETL 45
>gnl|CDD|221190 pfam11727, ISG65-75, Invariant surface glycoprotein. This family
is found in Trypanosome species, and appears to be one
of two invariant surface glycoproteins, ISG65 and ISG75.
that are found in the mammalian stage of the parasitic
protozoan. the sequence suggests the two families are
polypeptides with N-terminal signal sequences,
hydrophilic extracellular domains, single trans-membrane
alpha-helices and short cytoplasmic domains. they are
both expressed in the bloodstream form but not in the
midgut stage. Both polypeptides are distributed over the
entire surface of the parasite.
Length = 286
Score = 29.4 bits (66), Expect = 8.1
Identities = 13/53 (24%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 373 LIRHLRQKHRSHLDEVLAQGDKKKLEAQLLAAAATELTSVLEDGEEEGDEGEE 425
+++ +K S D L+ DKKK+ ++ A ++ L + ++ G E E+
Sbjct: 77 RVKYYLEKLESRSDSKLSDSDKKKI-KEICEKAKDKIDEALPEAKKAGREAEK 128
>gnl|CDD|235514 PRK05580, PRK05580, primosome assembly protein PriA; Validated.
Length = 679
Score = 29.4 bits (67), Expect = 9.0
Identities = 11/37 (29%), Positives = 18/37 (48%), Gaps = 3/37 (8%)
Query: 331 KCPICTKGFTM---KSSLKIHLLTHTKEPPKSCEVCG 364
+CP C T+ + L+ H + + PK+C CG
Sbjct: 392 ECPHCDASLTLHRFQRRLRCHHCGYQEPIPKACPECG 428
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.321 0.136 0.425
Gapped
Lambda K H
0.267 0.0691 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 41,511,200
Number of extensions: 4009251
Number of successful extensions: 3548
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3524
Number of HSP's successfully gapped: 107
Length of query: 831
Length of database: 10,937,602
Length adjustment: 105
Effective length of query: 726
Effective length of database: 6,280,432
Effective search space: 4559593632
Effective search space used: 4559593632
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 63 (28.1 bits)