RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11980
(831 letters)
>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex;
1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*
Length = 190
Score = 187 bits (477), Expect = 5e-55
Identities = 80/217 (36%), Positives = 111/217 (51%), Gaps = 30/217 (13%)
Query: 141 FPSSGAMKKHRRKHTGERPYECKEVCGRVFNRKDNLREHLRAHAGETKRKKKFKCDKCEK 200
S + GE+PY C E CG+ F+R D+L EH R H GE K +KC +C K
Sbjct: 3 EFGSSSSVAQAALEPGEKPYACPE-CGKSFSRSDHLAEHQRTHTGE----KPYKCPECGK 57
Query: 201 QFYGLTLLRIHERLHGLIERTCYARFAAKETLNRHMKTHSGVKPHVCEYCEKAFIQASQL 260
F+ K+ L RH +TH+G KP+ C C K+F Q + L
Sbjct: 58 ------------------------SFSDKKDLTRHQRTHTGEKPYKCPECGKSFSQRANL 93
Query: 261 KAHMFHHTGENGHTCELCNKTFNRKARLELHMKYIHEGADPYQCDICRKTFIRKEDLTRH 320
+AH HTGE + C C K+F++ A L H + H G PY+C C K+F R+++L H
Sbjct: 94 RAHQRTHTGEKPYACPECGKSFSQLAHLRAHQR-THTGEKPYKCPECGKSFSREDNLHTH 152
Query: 321 CLLHTGVKPHKCPICTKGFTMKSSLKIHLLTHTKEPP 357
HTG KP+KCP C K F+ + +L +H THT +
Sbjct: 153 QRTHTGEKPYKCPECGKSFSRRDALNVHQRTHTGKKT 189
Score = 168 bits (427), Expect = 4e-48
Identities = 73/249 (29%), Positives = 99/249 (39%), Gaps = 63/249 (25%)
Query: 82 FNRKDNLREHLRAHAGETKRKKKFKCDKCEKQFYGLTLLRIHERLH-AEKLYECDICKNR 140
+ GE K + C +C K F L H+R H EK Y+C C
Sbjct: 3 EFGSSSSVAQAALEPGE----KPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKS 58
Query: 141 FPSSGAMKKHRRKHTGERPYECKEVCGRVFNRKDNLREHLRAHAGETKRKKKFKCDKCEK 200
F + +H+R HTGE+PY+C E CG+ F+++ NLR H R H GE K + C +C K
Sbjct: 59 FSDKKDLTRHQRTHTGEKPYKCPE-CGKSFSQRANLRAHQRTHTGE----KPYACPECGK 113
Query: 201 QFYGLTLLRIHERLHGLIERTCYARFAAKETLNRHMKTHSGVKPHVCEYCEKAFIQASQL 260
F+ L H +TH+G KP+ C C K+F + L
Sbjct: 114 ------------------------SFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNL 149
Query: 261 KAHMFHHTGENGHTCELCNKTFNRKARLELHMKYIHEGADPYQCDICRKTFIRKEDLTRH 320
H HTGE PY+C C K+F R++ L H
Sbjct: 150 HTHQRTHTGEK-----------------------------PYKCPECGKSFSRRDALNVH 180
Query: 321 CLLHTGVKP 329
HTG K
Sbjct: 181 QRTHTGKKT 189
Score = 153 bits (390), Expect = 4e-43
Identities = 56/153 (36%), Positives = 77/153 (50%), Gaps = 1/153 (0%)
Query: 226 FAAKETLNRHMKTHSGVKPHVCEYCEKAFIQASQLKAHMFHHTGENGHTCELCNKTFNRK 285
+ G KP+ C C K+F ++ L H HTGE + C C K+F+ K
Sbjct: 3 EFGSSSSVAQAALEPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDK 62
Query: 286 ARLELHMKYIHEGADPYQCDICRKTFIRKEDLTRHCLLHTGVKPHKCPICTKGFTMKSSL 345
L H + H G PY+C C K+F ++ +L H HTG KP+ CP C K F+ + L
Sbjct: 63 KDLTRHQR-THTGEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHL 121
Query: 346 KIHLLTHTKEPPKSCEVCGRAFIRQDCLIRHLR 378
+ H THT E P C CG++F R+D L H R
Sbjct: 122 RAHQRTHTGEKPYKCPECGKSFSREDNLHTHQR 154
Score = 131 bits (333), Expect = 2e-35
Identities = 59/139 (42%), Positives = 77/139 (55%), Gaps = 10/139 (7%)
Query: 78 CGRVFNRKDNLREHLRAHAGETKRKKKFKCDKCEKQFYGLTLLRIHERLH-AEKLYECDI 136
CG+ F+ K +L H R H GE K +KC +C K F LR H+R H EK Y C
Sbjct: 55 CGKSFSDKKDLTRHQRTHTGE----KPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPE 110
Query: 137 CKNRFPSSGAMKKHRRKHTGERPYECKEVCGRVFNRKDNLREHLRAHAGETKRKKKFKCD 196
C F ++ H+R HTGE+PY+C E CG+ F+R+DNL H R H GE K +KC
Sbjct: 111 CGKSFSQLAHLRAHQRTHTGEKPYKCPE-CGKSFSREDNLHTHQRTHTGE----KPYKCP 165
Query: 197 KCEKQFYGLTLLRIHERLH 215
+C K F L +H+R H
Sbjct: 166 ECGKSFSRRDALNVHQRTH 184
Score = 127 bits (321), Expect = 8e-34
Identities = 50/126 (39%), Positives = 69/126 (54%), Gaps = 1/126 (0%)
Query: 253 AFIQASQLKAHMFHHTGENGHTCELCNKTFNRKARLELHMKYIHEGADPYQCDICRKTFI 312
+ +S A GE + C C K+F+R L H + H G PY+C C K+F
Sbjct: 2 SEFGSSSSVAQAALEPGEKPYACPECGKSFSRSDHLAEHQR-THTGEKPYKCPECGKSFS 60
Query: 313 RKEDLTRHCLLHTGVKPHKCPICTKGFTMKSSLKIHLLTHTKEPPKSCEVCGRAFIRQDC 372
K+DLTRH HTG KP+KCP C K F+ +++L+ H THT E P +C CG++F +
Sbjct: 61 DKKDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAH 120
Query: 373 LIRHLR 378
L H R
Sbjct: 121 LRAHQR 126
Score = 113 bits (286), Expect = 4e-29
Identities = 48/112 (42%), Positives = 64/112 (57%), Gaps = 6/112 (5%)
Query: 76 KVCGRVFNRKDNLREHLRAHAGETKRKKKFKCDKCEKQFYGLTLLRIHERLH-AEKLYEC 134
CG+ F+++ NLR H R H GE K + C +C K F L LR H+R H EK Y+C
Sbjct: 81 PECGKSFSQRANLRAHQRTHTGE----KPYACPECGKSFSQLAHLRAHQRTHTGEKPYKC 136
Query: 135 DICKNRFPSSGAMKKHRRKHTGERPYECKEVCGRVFNRKDNLREHLRAHAGE 186
C F + H+R HTGE+PY+C E CG+ F+R+D L H R H G+
Sbjct: 137 PECGKSFSREDNLHTHQRTHTGEKPYKCPE-CGKSFSRRDALNVHQRTHTGK 187
Score = 76.7 bits (190), Expect = 4e-16
Identities = 32/85 (37%), Positives = 44/85 (51%), Gaps = 5/85 (5%)
Query: 76 KVCGRVFNRKDNLREHLRAHAGETKRKKKFKCDKCEKQFYGLTLLRIHERLH-AEKLYEC 134
CG+ F++ +LR H R H GE K +KC +C K F L H+R H EK Y+C
Sbjct: 109 PECGKSFSQLAHLRAHQRTHTGE----KPYKCPECGKSFSREDNLHTHQRTHTGEKPYKC 164
Query: 135 DICKNRFPSSGAMKKHRRKHTGERP 159
C F A+ H+R HTG++
Sbjct: 165 PECGKSFSRRDALNVHQRTHTGKKT 189
>1tf6_A Protein (transcription factor IIIA); complex (transcription
regulation/DNA), RNA polymerase III, transcription
initiation, zinc finger protein; HET: DNA; 3.10A
{Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A
Length = 190
Score = 157 bits (399), Expect = 2e-44
Identities = 53/241 (21%), Positives = 75/241 (31%), Gaps = 60/241 (24%)
Query: 149 KHRRKHTGERPYECKEV-CGRVFNRKDNLREHLRAHAGETKRKKKFKCDKCEKQFYGLTL 207
+ + Y C CG +N+ L+ HL H GE K F C
Sbjct: 2 GEKALPVVYKRYICSFADCGAAYNKNWKLQAHLCKHTGE----KPFPCK----------- 46
Query: 208 LRIHERLHGLIERTCYARFAAKETLNRHMKTHSGVKPHVCE--YCEKAFIQASQLKAHMF 265
E C F + L RH TH+G K C+ C+ F + +K H
Sbjct: 47 -----------EEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFN 95
Query: 266 HHTGENGHTCELCNKTFNRKARLELHMKYIHEGADPYQCDI--CRKTFIRKEDLTRHCLL 323
Y C C K F + L H
Sbjct: 96 RFHNIK---------------------------ICVYVCHFENCGKAFKKHNQLKVHQFS 128
Query: 324 HTGVKPHKC--PICTKGFTMKSSLKIHLLTHTKEPPKSCEVCGRAFIRQDCLIRHLRQKH 381
HT P++C C K F++ S LK H H P K + C ++H+ + H
Sbjct: 129 HTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTWTLYLKHVAECH 188
Query: 382 R 382
+
Sbjct: 189 Q 189
Score = 141 bits (358), Expect = 9e-39
Identities = 45/217 (20%), Positives = 72/217 (33%), Gaps = 40/217 (18%)
Query: 91 HLRAHAGETKRKKKFKCDK--CEKQFYGLTLLRIHERLHA-EKLYECD--ICKNRFPSSG 145
K++ C C + L+ H H EK + C C+ F S
Sbjct: 3 EKALPVVY----KRYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLH 58
Query: 146 AMKKHRRKHTGERPYECKEV-CGRVFNRKDNLREHLRAHAGETKRKKKFKCDK--CEKQF 202
+ +H HTGE+ + C C F K N+++H + + C C K F
Sbjct: 59 HLTRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRFHNI--KICVYVCHFENCGKAF 116
Query: 203 YGLTLLRIHERLHGLIERTCYARFAAKETLNRHMKTHSGVKPHVC--EYCEKAFIQASQL 260
L++H+ +H+ P+ C E C+K F S+L
Sbjct: 117 KKHNQLKVHQF------------------------SHTQQLPYECPHEGCDKRFSLPSRL 152
Query: 261 KAHMFHHTGENGHTCELCNKTFNRKARLELHMKYIHE 297
K H H G + C+ H+ H+
Sbjct: 153 KRHEKVHAGYPCKKDDSCSFVGKTWTLYLKHVAECHQ 189
Score = 116 bits (293), Expect = 5e-30
Identities = 40/146 (27%), Positives = 56/146 (38%), Gaps = 15/146 (10%)
Query: 78 CGRVFNRKDNLREHLRAHAGETKRKKKFKCD--KCEKQFYGLTLLRIHERLH-AEKL--Y 132
C + F +L H H GE K F CD C+ +F ++ H K+ Y
Sbjct: 50 CEKGFTSLHHLTRHSLTHTGE----KNFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVY 105
Query: 133 ECDI--CKNRFPSSGAMKKHRRKHTGERPYECKEV-CGRVFNRKDNLREHLRAHAGETKR 189
C C F +K H+ HT + PYEC C + F+ L+ H + HAG
Sbjct: 106 VCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGY-PC 164
Query: 190 KKKFKCDKCEKQFYGLTLLRIHERLH 215
KK C K + L+ H
Sbjct: 165 KKDDSCSFVGKTWT--LYLKHVAECH 188
>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA
complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 155
Score = 126 bits (318), Expect = 7e-34
Identities = 44/179 (24%), Positives = 65/179 (36%), Gaps = 33/179 (18%)
Query: 157 ERPYECKEVCGRVFNRKDNLREHL---RAHAGETKRKKKFKCDKCEKQFYGLTLLRIHER 213
E C + F+ ++ L H+ H K+F C
Sbjct: 1 ETDCRWDG-CSQEFDSQEQLVHHINSEHIHGER----KEFVCHWGGCS------------ 43
Query: 214 LHGLIERTCYARFAAKETLNRHMKTHSGVKPHVCEY--CEKAFIQASQLKAHMFHHTGEN 271
F A+ L HM+ H+G KPH C + C K++ + LK H+ HTGE
Sbjct: 44 -------RELRPFKAQYMLVVHMRRHTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEK 96
Query: 272 GHTCE--LCNKTFNRKARLELHMKYIHEGADPYQCDI--CRKTFIRKEDLTRHCLLHTG 326
+ CE C+K F+ + H H PY C + C K + L +H G
Sbjct: 97 PYMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKTVHG 155
Score = 125 bits (315), Expect = 2e-33
Identities = 46/182 (25%), Positives = 66/182 (36%), Gaps = 39/182 (21%)
Query: 129 EKLYECDICKNRFPSSGAMKKH---RRKHTGERPYECKE----VCGRVFNRKDNLREHLR 181
E D C F S + H H + + C R F + L H+R
Sbjct: 1 ETDCRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMR 60
Query: 182 AHAGETKRKKKFKCDKCEKQFYGLTLLRIHERLHGLIERTCYARFAAKETLNRHMKTHSG 241
H GE K KC C ++ E L H+++H+G
Sbjct: 61 RHTGE----KPHKCTFEG----------------------CRKSYSRLENLKTHLRSHTG 94
Query: 242 VKPHVCEY--CEKAFIQASQLKAHMFH-HTGENGHTCEL--CNKTFNRKARLELHMKYIH 296
KP++CE+ C KAF AS H H+ E + C+L C K + + L H+K
Sbjct: 95 EKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVK-TV 153
Query: 297 EG 298
G
Sbjct: 154 HG 155
Score = 123 bits (311), Expect = 6e-33
Identities = 41/151 (27%), Positives = 64/151 (42%), Gaps = 16/151 (10%)
Query: 243 KPHVCEYCEKAFIQASQLKAHMFH---HTGENGHTCELCN-----KTFNRKARLELHMKY 294
+ C + F QL H+ H C + F + L +HM+
Sbjct: 2 TDCRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMR- 60
Query: 295 IHEGADPYQCDI--CRKTFIRKEDLTRHCLLHTGVKPHKC--PICTKGFTMKSSLKIHLL 350
H G P++C CRK++ R E+L H HTG KP+ C C+K F+ S H
Sbjct: 61 RHTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQN 120
Query: 351 -THTKEPPKSCEV--CGRAFIRQDCLIRHLR 378
TH+ E P C++ C + + L +H++
Sbjct: 121 RTHSNEKPYVCKLPGCTKRYTDPSSLRKHVK 151
Score = 121 bits (305), Expect = 4e-32
Identities = 47/180 (26%), Positives = 73/180 (40%), Gaps = 39/180 (21%)
Query: 103 KKFKCDKCEKQFYGLTLLRIH---ERLHA-EKLYECDICKNR-----FPSSGAMKKHRRK 153
+ D C ++F L H E +H K + C F + + H R+
Sbjct: 2 TDCRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRR 61
Query: 154 HTGERPYECK-EVCGRVFNRKDNLREHLRAHAGETKRKKKFKCDKCEKQFYGLTLLRIHE 212
HTGE+P++C E C + ++R +NL+ HLR+H GE K + C+
Sbjct: 62 HTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGE----KPYMCE---------------- 101
Query: 213 RLHGLIERTCYARFAAKETLNRHMK-THSGVKPHVCEY--CEKAFIQASQLKAHMFHHTG 269
C F+ +H THS KP+VC+ C K + S L+ H+ G
Sbjct: 102 ------HEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKTVHG 155
Score = 120 bits (304), Expect = 6e-32
Identities = 48/175 (27%), Positives = 67/175 (38%), Gaps = 34/175 (19%)
Query: 191 KKFKCDKCEKQFYGLTLLRIHERLHGLIERTCYARFAAKETLNRHMKTHSGVKPHVCEYC 250
+ D C ++F L H H K VC +
Sbjct: 2 TDCRWDGCSQEFDSQEQLVHHINSE---------------------HIHGERKEFVCHWG 40
Query: 251 E-----KAFIQASQLKAHMFHHTGENGHTC--ELCNKTFNRKARLELHMKYIHEGADPYQ 303
+ F L HM HTGE H C E C K+++R L+ H++ H G PY
Sbjct: 41 GCSRELRPFKAQYMLVVHMRRHTGEKPHKCTFEGCRKSYSRLENLKTHLR-SHTGEKPYM 99
Query: 304 C--DICRKTFIRKEDLTRH-CLLHTGVKPHKCPI--CTKGFTMKSSLKIHLLTHT 353
C + C K F D +H H+ KP+ C + CTK +T SSL+ H+ T
Sbjct: 100 CEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKTVH 154
Score = 109 bits (276), Expect = 3e-28
Identities = 40/153 (26%), Positives = 66/153 (43%), Gaps = 23/153 (15%)
Query: 78 CGRVFNRKDNLREHL---RAHAGETKRKKKFKCDKCE-----KQFYGLTLLRIHERLHA- 128
C + F+ ++ L H+ H K+F C + F +L +H R H
Sbjct: 9 CSQEFDSQEQLVHHINSEHIHGER----KEFVCHWGGCSRELRPFKAQYMLVVHMRRHTG 64
Query: 129 EKLYECDI--CKNRFPSSGAMKKHRRKHTGERPYECKEV-CGRVFNRKDNLREH-LRAHA 184
EK ++C C+ + +K H R HTGE+PY C+ C + F+ + +H R H+
Sbjct: 65 EKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHS 124
Query: 185 GETKRKKKFKCDK--CEKQFYGLTLLRIHERLH 215
E K + C C K++ + LR H +
Sbjct: 125 NE----KPYVCKLPGCTKRYTDPSSLRKHVKTV 153
Score = 31.4 bits (72), Expect = 0.52
Identities = 7/27 (25%), Positives = 13/27 (48%)
Query: 355 EPPKSCEVCGRAFIRQDCLIRHLRQKH 381
E + C + F Q+ L+ H+ +H
Sbjct: 1 ETDCRWDGCSQEFDSQEQLVHHINSEH 27
Score = 28.3 bits (64), Expect = 6.1
Identities = 5/20 (25%), Positives = 11/20 (55%)
Query: 78 CGRVFNRKDNLREHLRAHAG 97
C + + +LR+H++ G
Sbjct: 136 CTKRYTDPSSLRKHVKTVHG 155
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Mus musculus} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 124
Score = 122 bits (309), Expect = 5e-33
Identities = 40/145 (27%), Positives = 60/145 (41%), Gaps = 26/145 (17%)
Query: 154 HTGERPYECKEVCGRVFNRKDNLREHLRAHAGETKRKKKFKCDKCEKQFYGLTLLRIHER 213
+G EC C + F K L+ H R H GE K F+C KC K ++ L HE
Sbjct: 2 SSGSSGVECPT-CHKKFLSKYYLKVHNRKHTGE----KPFECPKCGKCYFRKENLLEHEA 56
Query: 214 LHGLIERTCYARFAAKETLNRHMKTHSGVKPHVCEYCEKAFIQASQLKAHMFHHTGENGH 273
+ + + C C++ F + +L+ HM HTGE +
Sbjct: 57 RNC---------------------MNRSEQVFTCSVCQETFRRRMELRLHMVSHTGEMPY 95
Query: 274 TCELCNKTFNRKARLELHMKYIHEG 298
C C++ F +K L+ HM +H G
Sbjct: 96 KCSSCSQQFMQKKDLQSHMIKLHSG 120
Score = 122 bits (309), Expect = 5e-33
Identities = 39/120 (32%), Positives = 57/120 (47%), Gaps = 3/120 (2%)
Query: 239 HSGVKPHVCEYCEKAFIQASQLKAHMFHHTGENGHTCELCNKTFNRKARLELHMKY--IH 296
SG C C K F+ LK H HTGE C C K + RK L H ++
Sbjct: 2 SSGSSGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMN 61
Query: 297 EGADPYQCDICRKTFIRKEDLTRHCLLHTGVKPHKCPICTKGFTMKSSLKIHLL-THTKE 355
+ C +C++TF R+ +L H + HTG P+KC C++ F K L+ H++ H+
Sbjct: 62 RSEQVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSGP 121
Score = 116 bits (292), Expect = 1e-30
Identities = 44/146 (30%), Positives = 65/146 (44%), Gaps = 33/146 (22%)
Query: 129 EKLYECDICKNRFPSSGAMKKHRRKHTGERPYECKEVCGRVFNRKDNLREHLRA---HAG 185
EC C +F S +K H RKHTGE+P+EC + CG+ + RK+NL EH +
Sbjct: 5 SSGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPK-CGKCYFRKENLLEHEARNCMNRS 63
Query: 186 ETKRKKKFKCDKCEKQFYGLTLLRIHERLHGLIERTCYARFAAKETLNRHMKTHSGVKPH 245
E + F C C++ F + L HM +H+G P+
Sbjct: 64 E----QVFTCSVCQET------------------------FRRRMELRLHMVSHTGEMPY 95
Query: 246 VCEYCEKAFIQASQLKAHMFH-HTGE 270
C C + F+Q L++HM H+G
Sbjct: 96 KCSSCSQQFMQKKDLQSHMIKLHSGP 121
Score = 115 bits (291), Expect = 1e-30
Identities = 35/121 (28%), Positives = 61/121 (50%), Gaps = 7/121 (5%)
Query: 267 HTGENGHTCELCNKTFNRKARLELHMKYIHEGADPYQCDICRKTFIRKEDLTRH---CLL 323
+G +G C C+K F K L++H + H G P++C C K + RKE+L H +
Sbjct: 2 SSGSSGVECPTCHKKFLSKYYLKVHNR-KHTGEKPFECPKCGKCYFRKENLLEHEARNCM 60
Query: 324 HTGVKPHKCPICTKGFTMKSSLKIHLLTHTKEPPKSCEVCGRAFIRQDCLIRHLRQKHRS 383
+ + C +C + F + L++H+++HT E P C C + F+++ L H +
Sbjct: 61 NRSEQVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSH---MIKL 117
Query: 384 H 384
H
Sbjct: 118 H 118
Score = 106 bits (267), Expect = 3e-27
Identities = 37/114 (32%), Positives = 58/114 (50%), Gaps = 10/114 (8%)
Query: 78 CGRVFNRKDNLREHLRAHAGETKRKKKFKCDKCEKQFYGLTLLRIHERLHA----EKLYE 133
C + F K L+ H R H GE K F+C KC K ++ L HE + E+++
Sbjct: 13 CHKKFLSKYYLKVHNRKHTGE----KPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFT 68
Query: 134 CDICKNRFPSSGAMKKHRRKHTGERPYECKEVCGRVFNRKDNLREH-LRAHAGE 186
C +C+ F ++ H HTGE PY+C C + F +K +L+ H ++ H+G
Sbjct: 69 CSVCQETFRRRMELRLHMVSHTGEMPYKCSS-CSQQFMQKKDLQSHMIKLHSGP 121
Score = 47.1 bits (113), Expect = 1e-06
Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 5/53 (9%)
Query: 76 KVCGRVFNRKDNLREHLRAHAGETKRKKKFKCDKCEKQFYGLTLLRIH-ERLH 127
VC F R+ LR H+ +H GE +KC C +QF L+ H +LH
Sbjct: 70 SVCQETFRRRMELRLHMVSHTGE----MPYKCSSCSQQFMQKKDLQSHMIKLH 118
>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the
cerebellum 3, disease mutation, DNA-binding,
metal-binding, nucleus, polymorphism; NMR {Homo sapiens}
Length = 155
Score = 121 bits (305), Expect = 4e-32
Identities = 35/151 (23%), Positives = 56/151 (37%), Gaps = 17/151 (11%)
Query: 226 FAAKETLNRHMK---THSGVKPHVCEYCEKAFIQASQLKAHMFHHTGE---------NGH 273
++ + + + + + C++ F +L H+
Sbjct: 4 GSSGQPIKQELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWE 63
Query: 274 TCELCNKTFNRKARLELHMKYIHEGADPYQCDI--CRKTFIRKEDLTRHCLLHTGVKPHK 331
C K+F K +L H++ +H G P+ C C K F R E+L H HTG KP K
Sbjct: 64 ECPREGKSFKAKYKLVNHIR-VHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFK 122
Query: 332 CPI--CTKGFTMKSSLKIHLLTHTKEPPKSC 360
C C + F S K H+ HT +
Sbjct: 123 CEFEGCDRRFANSSDRKKHMHVHTSDKSGPS 153
Score = 120 bits (303), Expect = 7e-32
Identities = 35/175 (20%), Positives = 55/175 (31%), Gaps = 29/175 (16%)
Query: 137 CKNRFPSSGAMKKHRRKHTGERPYECKEVCGRVFNRKDNLREHLRAHAGETKRKKKFKC- 195
+ + + K C R F+ L H+ + C
Sbjct: 3 SGSSGQPIKQELSCKWIDEAQLSRPKKS-CDRTFSTMHELVTHVTMEHVGGPEQNNHVCY 61
Query: 196 -DKCEKQFYGLTLLRIHERLHGLIERTCYARFAAKETLNRHMKTHSGVKPHVCEY--CEK 252
++C + F AK L H++ H+G KP C + C K
Sbjct: 62 WEECPR---------------------EGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGK 100
Query: 253 AFIQASQLKAHMFHHTGENGHTCEL--CNKTFNRKARLELHMKYIHEGADPYQCD 305
F ++ LK H HTGE CE C++ F + + HM +H
Sbjct: 101 IFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMH-VHTSDKSGPSS 154
Score = 118 bits (299), Expect = 2e-31
Identities = 39/179 (21%), Positives = 54/179 (30%), Gaps = 39/179 (21%)
Query: 109 KCEKQFYGLTLLRIHERLHA-EKLYECDICKNRFPSSGAMKKHRRKHTGERPY------- 160
+ + + + C F + + H P
Sbjct: 2 SSGSSGQPIKQELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCY 61
Query: 161 --ECKEVCGRVFNRKDNLREHLRAHAGETKRKKKFKCDKCEKQFYGLTLLRIHERLHGLI 218
EC G+ F K L H+R H GE K F C
Sbjct: 62 WEECPR-EGKSFKAKYKLVNHIRVHTGE----KPFPCPFPG------------------- 97
Query: 219 ERTCYARFAAKETLNRHMKTHSGVKPHVCEY--CEKAFIQASQLKAHMFHHTGENGHTC 275
C FA E L H +TH+G KP CE+ C++ F +S K HM HT +
Sbjct: 98 ---CGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVHTSDKSGPS 153
Score = 111 bits (279), Expect = 1e-28
Identities = 39/143 (27%), Positives = 54/143 (37%), Gaps = 17/143 (11%)
Query: 252 KAFIQASQLKAHMFH---HTGENGHTCELCNKTFNRKARLELHMKYIHEGADPYQ----- 303
+ +K + + + C++TF+ L H+ + P Q
Sbjct: 2 SSGSSGQPIKQELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVT-MEHVGGPEQNNHVC 60
Query: 304 ----CDICRKTFIRKEDLTRHCLLHTGVKPHKCPI--CTKGFTMKSSLKIHLLTHTKEPP 357
C K+F K L H +HTG KP CP C K F +LKIH THT E P
Sbjct: 61 YWEECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKP 120
Query: 358 KSCEV--CGRAFIRQDCLIRHLR 378
CE C R F +H+
Sbjct: 121 FKCEFEGCDRRFANSSDRKKHMH 143
Score = 108 bits (271), Expect = 2e-27
Identities = 39/181 (21%), Positives = 55/181 (30%), Gaps = 41/181 (22%)
Query: 78 CGRVFNRKDNLREHLRAHAGETKRKKKFKCDKCEKQFYGLTLLRIHERLH-AEKLY---- 132
G + C++ F + L H +
Sbjct: 3 SGSSGQPIKQELSCKWIDEAQ----LSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNH 58
Query: 133 -----ECDICKNRFPSSGAMKKHRRKHTGERPYECKEV-CGRVFNRKDNLREHLRAHAGE 186
EC F + + H R HTGE+P+ C CG++F R +NL+ H R H GE
Sbjct: 59 VCYWEECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGE 118
Query: 187 TKRKKKFKCDKCEKQFYGLTLLRIHERLHGLIERTCYARFAAKETLNRHMKTHSGVKPHV 246
K FKC+ C RFA +HM H+ K
Sbjct: 119 ----KPFKCEFEG----------------------CDRRFANSSDRKKHMHVHTSDKSGP 152
Query: 247 C 247
Sbjct: 153 S 153
Score = 43.4 bits (103), Expect = 5e-05
Identities = 6/47 (12%), Positives = 12/47 (25%)
Query: 335 CTKGFTMKSSLKIHLLTHTKEPPKSCEVCGRAFIRQDCLIRHLRQKH 381
+ + + C R F L+ H+ +H
Sbjct: 3 SGSSGQPIKQELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEH 49
>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET:
DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*
Length = 119
Score = 118 bits (299), Expect = 9e-32
Identities = 42/145 (28%), Positives = 64/145 (44%), Gaps = 30/145 (20%)
Query: 155 TGERPYECKEV-CGRVFNRKDNLREHLRAHAGETKRKKKFKCDKCEKQFYGLTLLRIHER 213
+ +RP+ C C + + + +L+ H R H GE K ++CD +
Sbjct: 2 SEKRPFMCAYPGCNKRYFKLSHLQMHSRKHTGE----KPYQCDFKD-------------- 43
Query: 214 LHGLIERTCYARFAAKETLNRHMKTHSGVKPHVCEYCEKAFIQASQLKAHMFHHTGENGH 273
C RF+ + L RH + H+GVKP C+ C++ F ++ LK H HTGE
Sbjct: 44 --------CERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKFSRSDHLKTHTRTHTGEKPF 95
Query: 274 TCEL--CNKTFNRKARLELHMKYIH 296
+C C K F R L H +H
Sbjct: 96 SCRWPSCQKKFARSDELVRHHN-MH 119
Score = 115 bits (290), Expect = 2e-30
Identities = 42/119 (35%), Positives = 58/119 (48%), Gaps = 7/119 (5%)
Query: 240 SGVKPHVCEY--CEKAFIQASQLKAHMFHHTGENGHTCEL--CNKTFNRKARLELHMKYI 295
S +P +C Y C K + + S L+ H HTGE + C+ C + F+R +L+ H +
Sbjct: 2 SEKRPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQR-R 60
Query: 296 HEGADPYQCDICRKTFIRKEDLTRHCLLHTGVKPHKC--PICTKGFTMKSSLKIHLLTH 352
H G P+QC C++ F R + L H HTG KP C P C K F L H H
Sbjct: 61 HTGVKPFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119
Score = 112 bits (283), Expect = 2e-29
Identities = 38/110 (34%), Positives = 58/110 (52%), Gaps = 8/110 (7%)
Query: 78 CGRVFNRKDNLREHLRAHAGETKRKKKFKCDK--CEKQFYGLTLLRIHERLH-AEKLYEC 134
C + + + +L+ H R H GE K ++CD CE++F L+ H+R H K ++C
Sbjct: 14 CNKRYFKLSHLQMHSRKHTGE----KPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQC 69
Query: 135 DICKNRFPSSGAMKKHRRKHTGERPYECKEV-CGRVFNRKDNLREHLRAH 183
C+ +F S +K H R HTGE+P+ C+ C + F R D L H H
Sbjct: 70 KTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119
Score = 111 bits (279), Expect = 6e-29
Identities = 45/117 (38%), Positives = 60/117 (51%), Gaps = 7/117 (5%)
Query: 268 TGENGHTCE--LCNKTFNRKARLELHMKYIHEGADPYQCDI--CRKTFIRKEDLTRHCLL 323
+ + C CNK + + + L++H + H G PYQCD C + F R + L RH
Sbjct: 2 SEKRPFMCAYPGCNKRYFKLSHLQMHSR-KHTGEKPYQCDFKDCERRFSRSDQLKRHQRR 60
Query: 324 HTGVKPHKCPICTKGFTMKSSLKIHLLTHTKEPPKSCEV--CGRAFIRQDCLIRHLR 378
HTGVKP +C C + F+ LK H THT E P SC C + F R D L+RH
Sbjct: 61 HTGVKPFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHN 117
>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB
domain containing protein 22B, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 110
Score = 117 bits (296), Expect = 2e-31
Identities = 37/110 (33%), Positives = 52/110 (47%), Gaps = 4/110 (3%)
Query: 236 MKTHSGVKPHVCEYCEKAFIQASQLKAHMFHHTGENGHTCELCNKTFNRKARLELHMKYI 295
SG K + C+ C K+F SQ HM H G + C +C K F K L HMK I
Sbjct: 2 SSGSSGDKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMK-I 59
Query: 296 HEGADPYQCDICRKTFIRKEDLTRHCLLHTGVKPHKCPICTKGFTMKSSL 345
H G PY+C+IC K F+ ++ RH + + K ++ + T S
Sbjct: 60 HTGIKPYECNICAKRFMWRDSFHRH--VTSCTKSYEAAKAEQNTTEASGP 107
Score = 103 bits (260), Expect = 1e-26
Identities = 31/103 (30%), Positives = 48/103 (46%), Gaps = 4/103 (3%)
Query: 267 HTGENGHTCELCNKTFNRKARLELHMKYIHEGADPYQCDICRKTFIRKEDLTRHCLLHTG 326
+G+ + C+ C K+F K++ + HM +H G PY C +C K F K L H +HTG
Sbjct: 5 SSGDKLYPCQ-CGKSFTHKSQRDRHMS-MHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTG 62
Query: 327 VKPHKCPICTKGFTMKSSLKIHLLTHTKEPPKSCEVCGRAFIR 369
+KP++C IC K F + S H + +
Sbjct: 63 IKPYECNICAKRFMWRDSF--HRHVTSCTKSYEAAKAEQNTTE 103
Score = 98.7 bits (247), Expect = 9e-25
Identities = 34/140 (24%), Positives = 52/140 (37%), Gaps = 33/140 (23%)
Query: 124 ERLH-AEKLYECDICKNRFPSSGAMKKHRRKHTGERPYECKEVCGRVFNRKDNLREHLRA 182
+KLY C C F +H H G RPY C CG+ F K +L H++
Sbjct: 2 SSGSSGDKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGV-CGKKFKMKHHLVGHMKI 59
Query: 183 HAGETKRKKKFKCDKCEKQFYGLTLLRIHERLHGLIERTCYARFAAKETLNRHMKTHSGV 242
H G K ++C+ C K RF +++ +RH+ S
Sbjct: 60 HTGI----KPYECNICAK------------------------RFMWRDSFHRHV--TSCT 89
Query: 243 KPHVCEYCEKAFIQASQLKA 262
K + E+ +AS +
Sbjct: 90 KSYEAAKAEQNTTEASGPSS 109
Score = 94.0 bits (235), Expect = 3e-23
Identities = 27/111 (24%), Positives = 45/111 (40%), Gaps = 13/111 (11%)
Query: 93 RAHAGETKRKKKFKCDKCEKQFYGLTLLRIHERLH-AEKLYECDICKNRFPSSGAMKKHR 151
+G+ K + C C K F + H +H + Y C +C +F + H
Sbjct: 3 SGSSGD----KLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHM 57
Query: 152 RKHTGERPYECKEVCGRVFNRKDNLREHLRAHAGETKRKKKFKCDKCEKQF 202
+ HTG +PYEC C + F +D+ H + K ++ K E+
Sbjct: 58 KIHTGIKPYECNI-CAKRFMWRDSF--HRHVTSCT----KSYEAAKAEQNT 101
Score = 87.5 bits (218), Expect = 7e-21
Identities = 29/82 (35%), Positives = 40/82 (48%), Gaps = 1/82 (1%)
Query: 295 IHEGADPYQCDICRKTFIRKEDLTRHCLLHTGVKPHKCPICTKGFTMKSSLKIHLLTHTK 354
G Y C C K+F K RH +H G++P+ C +C K F MK L H+ HT
Sbjct: 4 GSSGDKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTG 62
Query: 355 EPPKSCEVCGRAFIRQDCLIRH 376
P C +C + F+ +D RH
Sbjct: 63 IKPYECNICAKRFMWRDSFHRH 84
Score = 67.5 bits (166), Expect = 8e-14
Identities = 21/102 (20%), Positives = 31/102 (30%), Gaps = 34/102 (33%)
Query: 76 KVCGRVFNRKDNLREHLRAHAGETKRKKKFKCDKCEKQFYGLTLLRIHERLHAEKLYECD 135
VCG+ F K +L H++ H G K YEC+
Sbjct: 41 GVCGKKFKMKHHLVGHMKIHTG-------------------------------IKPYECN 69
Query: 136 ICKNRFPSSGAMKKHRRKHTGERPYECKEVCGRVFNRKDNLR 177
IC RF + HR + + YE + +
Sbjct: 70 ICAKRFMWRDSF--HRHVTSCTKSYEAAK-AEQNTTEASGPS 108
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Mus musculus} SCOP:
k.12.1.1
Length = 106
Score = 111 bits (280), Expect = 3e-29
Identities = 29/102 (28%), Positives = 45/102 (44%), Gaps = 1/102 (0%)
Query: 231 TLNRHMKTHSGVKPHVCEYCEKAFIQASQLKAHMFHHTGENGHTCELCNKTFNRKARLEL 290
+ K +C++C + F ++ L H HT E +TC++C+K F R+ L
Sbjct: 4 GSSGGRLPSKTKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRD 63
Query: 291 HMKYIHEGADPYQCDICRKTFIRKEDLTRHCLLHTGVKPHKC 332
H +YIH P++C C K F + L H LH
Sbjct: 64 H-RYIHSKEKPFKCQECGKGFCQSRTLAVHKTLHMQTSSPTA 104
Score = 102 bits (257), Expect = 3e-26
Identities = 31/110 (28%), Positives = 44/110 (40%), Gaps = 10/110 (9%)
Query: 87 NLREHLRAHAGETKRKKKFKCDKCEKQFYGLTLLRIHERLH-AEKLYECDICKNRFPSSG 145
+ K+F C C + F L IHER H E+ Y CDIC F
Sbjct: 4 GSSGGRLPSKTK----KEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQD 59
Query: 146 AMKKHRRKHTGERPYECKEVCGRVFNRKDNLREHLRAHAGETKRKKKFKC 195
++ HR H+ E+P++C+E CG+ F + L H H
Sbjct: 60 HLRDHRYIHSKEKPFKCQE-CGKGFCQSRTLAVHKTLHMQT----SSPTA 104
Score = 102 bits (257), Expect = 3e-26
Identities = 30/103 (29%), Positives = 44/103 (42%), Gaps = 1/103 (0%)
Query: 258 SQLKAHMFHHTGENGHTCELCNKTFNRKARLELHMKYIHEGADPYQCDICRKTFIRKEDL 317
S + C+ C + F + L +H + H PY CDIC K F R++ L
Sbjct: 3 SGSSGGRLPSKTKKEFICKFCGRHFTKSYNLLIHER-THTDERPYTCDICHKAFRRQDHL 61
Query: 318 TRHCLLHTGVKPHKCPICTKGFTMKSSLKIHLLTHTKEPPKSC 360
H +H+ KP KC C KGF +L +H H + +
Sbjct: 62 RDHRYIHSKEKPFKCQECGKGFCQSRTLAVHKTLHMQTSSPTA 104
Score = 92.9 bits (232), Expect = 8e-23
Identities = 25/94 (26%), Positives = 39/94 (41%), Gaps = 1/94 (1%)
Query: 285 KARLELHMKYIHEGADPYQCDICRKTFIRKEDLTRHCLLHTGVKPHKCPICTKGFTMKSS 344
+ + + C C + F + +L H HT +P+ C IC K F +
Sbjct: 2 SSGSSGGRL-PSKTKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDH 60
Query: 345 LKIHLLTHTKEPPKSCEVCGRAFIRQDCLIRHLR 378
L+ H H+KE P C+ CG+ F + L H
Sbjct: 61 LRDHRYIHSKEKPFKCQECGKGFCQSRTLAVHKT 94
Score = 86.7 bits (216), Expect = 1e-20
Identities = 26/130 (20%), Positives = 42/130 (32%), Gaps = 29/130 (22%)
Query: 175 NLREHLRAHAGETKRKKKFKCDKCEKQFYGLTLLRIHERLHGLIERTCYARFAAKETLNR 234
+ K+F C C + F L
Sbjct: 4 GSSGGRLPSKTK----KEFICKFCGRHF------------------------TKSYNLLI 35
Query: 235 HMKTHSGVKPHVCEYCEKAFIQASQLKAHMFHHTGENGHTCELCNKTFNRKARLELHMKY 294
H +TH+ +P+ C+ C KAF + L+ H + H+ E C+ C K F + L +H
Sbjct: 36 HERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQECGKGFCQSRTLAVHKT- 94
Query: 295 IHEGADPYQC 304
+H
Sbjct: 95 LHMQTSSPTA 104
Score = 56.3 bits (137), Expect = 5e-10
Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 5/60 (8%)
Query: 76 KVCGRVFNRKDNLREHLRAHAGETKRKKKFKCDKCEKQFYGLTLLRIHERLH-AEKLYEC 134
+C + F R+D+LR+H H+ E K FKC +C K F L +H+ LH
Sbjct: 49 DICHKAFRRQDHLRDHRYIHSKE----KPFKCQECGKGFCQSRTLAVHKTLHMQTSSPTA 104
>1ubd_C Protein (YY1 zinc finger domain); transcription initiation,
initiator element, zinc finger protein, DNA- protein
recognition; HET: DNA; 2.50A {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*
Length = 124
Score = 111 bits (281), Expect = 3e-29
Identities = 41/121 (33%), Positives = 58/121 (47%), Gaps = 8/121 (6%)
Query: 243 KPHVCEY--CEKAFIQASQLKAHMFHHTGENGHTCELCNKTFNRKARLELHMKYIHEGAD 300
+ C + C K F S ++ H+ H G H C C K F ++L+ H +H G
Sbjct: 4 RTIACPHKGCTKMFRDNSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQL-VHTGEK 61
Query: 301 PYQCDI--CRKTFIRKEDLTRHCLLHTGVKPHKCPI--CTKGFTMKSSLKIHLLTHTKEP 356
P+QC C K F +L H +HTG +P+ CP C K F ++LK H+LTH K
Sbjct: 62 PFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKAK 121
Query: 357 P 357
Sbjct: 122 N 122
Score = 109 bits (274), Expect = 2e-28
Identities = 39/124 (31%), Positives = 60/124 (48%), Gaps = 9/124 (7%)
Query: 67 EEKQICTYIKVCGRVFNRKDNLREHLRAHAGETKRKKKFKCDKCEKQFYGLTLLRIHERL 126
E + I K C ++F +R+HL H G + C +C K F + L+ H+ +
Sbjct: 2 EPRTIACPHKGCTKMFRDNSAMRKHLHTH-GP----RVHVCAECGKAFVESSKLKRHQLV 56
Query: 127 H-AEKLYECDI--CKNRFPSSGAMKKHRRKHTGERPYEC-KEVCGRVFNRKDNLREHLRA 182
H EK ++C C RF ++ H R HTG+RPY C + C + F + NL+ H+
Sbjct: 57 HTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILT 116
Query: 183 HAGE 186
HA
Sbjct: 117 HAKA 120
Score = 108 bits (273), Expect = 3e-28
Identities = 38/148 (25%), Positives = 60/148 (40%), Gaps = 29/148 (19%)
Query: 101 RKKKFKCDK--CEKQFYGLTLLRIHERLHAEKLYECDICKNRFPSSGAMKKHRRKHTGER 158
+ C C K F + +R H H +++ C C F S +K+H+ HTGE+
Sbjct: 2 EPRTIACPHKGCTKMFRDNSAMRKHLHTHGPRVHVCAECGKAFVESSKLKRHQLVHTGEK 61
Query: 159 PYECKEV-CGRVFNRKDNLREHLRAHAGETKRKKKFKCDKCEKQFYGLTLLRIHERLHGL 217
P++C CG+ F+ NLR H+R H G+ + + C
Sbjct: 62 PFQCTFEGCGKRFSLDFNLRTHVRIHTGD----RPYVCPFDG------------------ 99
Query: 218 IERTCYARFAAKETLNRHMKTHSGVKPH 245
C +FA L H+ TH+ K +
Sbjct: 100 ----CNKKFAQSTNLKSHILTHAKAKNN 123
Score = 106 bits (268), Expect = 2e-27
Identities = 41/114 (35%), Positives = 56/114 (49%), Gaps = 6/114 (5%)
Query: 222 CYARFAAKETLNRHMKTHSGVKPHVCEYCEKAFIQASQLKAHMFHHTGENGHTCEL--CN 279
C F + +H+ TH G + HVC C KAF+++S+LK H HTGE C C
Sbjct: 13 CTKMFRDNSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCG 71
Query: 280 KTFNRKARLELHMKYIHEGADPYQCDI--CRKTFIRKEDLTRHCLLHTGVKPHK 331
K F+ L H++ IH G PY C C K F + +L H L H K ++
Sbjct: 72 KRFSLDFNLRTHVR-IHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKAKNNQ 124
Score = 96.8 bits (242), Expect = 5e-24
Identities = 33/109 (30%), Positives = 50/109 (45%), Gaps = 6/109 (5%)
Query: 274 TCELCNKTFNRKARLELHMKYIHEGADPYQCDICRKTFIRKEDLTRHCLLHTGVKPHKCP 333
+ C K F + + H+ H G + C C K F+ L RH L+HTG KP +C
Sbjct: 9 PHKGCTKMFRDNSAMRKHLH-TH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCT 66
Query: 334 I--CTKGFTMKSSLKIHLLTHTKEPPKSCEV--CGRAFIRQDCLIRHLR 378
C K F++ +L+ H+ HT + P C C + F + L H+
Sbjct: 67 FEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHIL 115
Score = 76.8 bits (190), Expect = 5e-17
Identities = 27/89 (30%), Positives = 39/89 (43%), Gaps = 9/89 (10%)
Query: 78 CGRVFNRKDNLREHLRAHAGETKRKKKFKC--DKCEKQFYGLTLLRIHERLH-AEKLYEC 134
CG+ F L+ H H GE K F+C + C K+F LR H R+H ++ Y C
Sbjct: 40 CGKAFVESSKLKRHQLVHTGE----KPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVC 95
Query: 135 DI--CKNRFPSSGAMKKHRRKHTGERPYE 161
C +F S +K H H + +
Sbjct: 96 PFDGCNKKFAQSTNLKSHILTHAKAKNNQ 124
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein,
DNA- binding, transcription, C2H2-type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1
Length = 96
Score = 108 bits (272), Expect = 3e-28
Identities = 30/95 (31%), Positives = 41/95 (43%), Gaps = 1/95 (1%)
Query: 238 THSGVKPHVCEYCEKAFIQASQLKAHMFHHTGENGHTCELCNKTFNRKARLELHMKYIHE 297
+ PH CE C K F + +LK HM HTG + C+ C+ + L H++ IH
Sbjct: 2 SSGSSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLR-IHS 60
Query: 298 GADPYQCDICRKTFIRKEDLTRHCLLHTGVKPHKC 332
P++C IC LT H HTG
Sbjct: 61 DERPFKCQICPYASRNSSQLTVHLRSHTGDSGPSS 95
Score = 102 bits (256), Expect = 4e-26
Identities = 32/94 (34%), Positives = 45/94 (47%), Gaps = 1/94 (1%)
Query: 267 HTGENGHTCELCNKTFNRKARLELHMKYIHEGADPYQCDICRKTFIRKEDLTRHCLLHTG 326
H CE+C K F+RK +L+ HM+ H G PY+C C L +H +H+
Sbjct: 3 SGSSGPHKCEVCGKCFSRKDKLKTHMR-CHTGVKPYKCKTCDYAAADSSSLNKHLRIHSD 61
Query: 327 VKPHKCPICTKGFTMKSSLKIHLLTHTKEPPKSC 360
+P KC IC S L +HL +HT + S
Sbjct: 62 ERPFKCQICPYASRNSSQLTVHLRSHTGDSGPSS 95
Score = 98.7 bits (247), Expect = 5e-25
Identities = 29/102 (28%), Positives = 40/102 (39%), Gaps = 10/102 (9%)
Query: 95 HAGETKRKKKFKCDKCEKQFYGLTLLRIHERLH-AEKLYECDICKNRFPSSGAMKKHRRK 153
KC+ C K F L+ H R H K Y+C C S ++ KH R
Sbjct: 3 SGSS----GPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRI 58
Query: 154 HTGERPYECKEVCGRVFNRKDNLREHLRAHAGETKRKKKFKC 195
H+ ERP++C+ C L HLR+H G+
Sbjct: 59 HSDERPFKCQI-CPYASRNSSQLTVHLRSHTGD----SGPSS 95
Score = 96.3 bits (241), Expect = 4e-24
Identities = 33/83 (39%), Positives = 43/83 (51%)
Query: 296 HEGADPYQCDICRKTFIRKEDLTRHCLLHTGVKPHKCPICTKGFTMKSSLKIHLLTHTKE 355
+ P++C++C K F RK+ L H HTGVKP+KC C SSL HL H+ E
Sbjct: 3 SGSSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDE 62
Query: 356 PPKSCEVCGRAFIRQDCLIRHLR 378
P C++C A L HLR
Sbjct: 63 RPFKCQICPYASRNSSQLTVHLR 85
Score = 89.8 bits (224), Expect = 7e-22
Identities = 30/88 (34%), Positives = 46/88 (52%), Gaps = 5/88 (5%)
Query: 76 KVCGRVFNRKDNLREHLRAHAGETKRKKKFKCDKCEKQFYGLTLLRIHERLHA-EKLYEC 134
+VCG+ F+RKD L+ H+R H G K +KC C+ + L H R+H+ E+ ++C
Sbjct: 12 EVCGKCFSRKDKLKTHMRCHTGV----KPYKCKTCDYAAADSSSLNKHLRIHSDERPFKC 67
Query: 135 DICKNRFPSSGAMKKHRRKHTGERPYEC 162
IC +S + H R HTG+
Sbjct: 68 QICPYASRNSSQLTVHLRSHTGDSGPSS 95
Score = 89.8 bits (224), Expect = 8e-22
Identities = 29/151 (19%), Positives = 49/151 (32%), Gaps = 58/151 (38%)
Query: 154 HTGERPYECKEVCGRVFNRKDNLREHLRAHAGETKRKKKFKCDKCEKQFYGLTLLRIHER 213
P++C+ C KC
Sbjct: 3 SGSSGPHKCEV------------------------------CGKC--------------- 17
Query: 214 LHGLIERTCYARFAAKETLNRHMKTHSGVKPHVCEYCEKAFIQASQLKAHMFHHTGENGH 273
F+ K+ L HM+ H+GVKP+ C+ C+ A +S L H+ H+ E
Sbjct: 18 ------------FSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPF 65
Query: 274 TCELCNKTFNRKARLELHMKYIHEGADPYQC 304
C++C ++L +H++ H G
Sbjct: 66 KCQICPYASRNSSQLTVHLR-SHTGDSGPSS 95
Score = 36.6 bits (86), Expect = 0.003
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 351 THTKEPPKSCEVCGRAFIRQDCLIRHLR 378
+ P CEVCG+ F R+D L H+R
Sbjct: 2 SSGSSGPHKCEVCGKCFSRKDKLKTHMR 29
>2hbt_A EGL nine homolog 1; prolyl hydroxylase, hypoxia inducible factor,
HIF, 2- oxoglutarate, oxygenase, oxidoreductase; HET:
UN9; 1.60A {Homo sapiens} PDB: 2hbu_A* 2g1m_A* 3hqu_A*
3hqr_A* 2y33_A* 2y34_A* 2g19_A* 3ouj_A* 3ouh_A* 3oui_A*
Length = 247
Score = 111 bits (279), Expect = 9e-28
Identities = 81/204 (39%), Positives = 112/204 (54%), Gaps = 47/204 (23%)
Query: 626 PFHHTNNDRVHSDMIENVIRDMDQYGLCVVDNFLGPERGMAVLHEVLGMYHSGVFKDGQL 685
HH ++ +E ++ M+++G+CVVD+FLG E G + EV ++ +G F DGQL
Sbjct: 2 AHHHHHHLPALKLALEYIVPCMNKHGICVVDDFLGKETGQQIGDEVRALHDTGKFTDGQL 61
Query: 686 VSNKSTNKQDLKTIRGDQITWIDGRETYCSNIGRLISEVDAIIMRANRMVNNGRMGDFVI 745
VS KS + +D IRGD+ITWI+G+E C IG L+S +D +I N ++G + I
Sbjct: 62 VSQKSDSSKD---IRGDKITWIEGKEPGCETIGLLMSSMDDLIRHCNG-----KLGSYKI 113
Query: 746 NGRTKQNGGLLRIFPEGGGDKVADIEPMFDRILFFWSDRRNPHEAMVACYPGHGSHYVKH 805
NGR +AMVACYPG+G+ YV+H
Sbjct: 114 NGR---------------------------------------TKAMVACYPGNGTGYVRH 134
Query: 806 VDNPNRDGRCITAIYYLNRDWDIK 829
VDNPN DGRC+T IYYLN+DWD K
Sbjct: 135 VDNPNGDGRCVTCIYYLNKDWDAK 158
>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 86
Score = 94.5 bits (236), Expect = 1e-23
Identities = 25/110 (22%), Positives = 35/110 (31%), Gaps = 25/110 (22%)
Query: 145 GAMKKHRRKHTGERPYECKEVCGRVFNRKDNLREHLRAHAGETKRKKKFKCDKCEKQFYG 204
G+ R HTGE+PY C C + F +K L H + + F C KC K
Sbjct: 1 GSSGSSGRTHTGEKPYACSH-CDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGK---- 55
Query: 205 LTLLRIHERLHGLIERTCYARFAAKETLNRHMKTHSGVKPHVCEYCEKAF 254
F + T+ RH +G E +
Sbjct: 56 --------------------TFTRRNTMARHADNCAGPDGVEGENSGPSS 85
Score = 87.2 bits (217), Expect = 4e-21
Identities = 22/85 (25%), Positives = 34/85 (40%), Gaps = 5/85 (5%)
Query: 231 TLNRHMKTHSGVKPHVCEYCEKAFIQASQLKAHMFHHTGENG----HTCELCNKTFNRKA 286
+ +TH+G KP+ C +C+K F Q L H + N C C KTF R+
Sbjct: 2 SSGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRN 61
Query: 287 RLELHMKYIHEGADPYQCDICRKTF 311
+ H G D + + +
Sbjct: 62 TMARHAD-NCAGPDGVEGENSGPSS 85
Score = 81.8 bits (203), Expect = 3e-19
Identities = 17/88 (19%), Positives = 29/88 (32%), Gaps = 10/88 (11%)
Query: 120 LRIHERLH-AEKLYECDICKNRFPSSGAMKKHRRKHTGE----RPYECKEVCGRVFNRKD 174
R H EK Y C C F + H +++ + C + CG+ F R++
Sbjct: 3 SGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSK-CGKTFTRRN 61
Query: 175 NLREHLRAHAGETKRKKKFKCDKCEKQF 202
+ H AG + +
Sbjct: 62 TMARHADNCAGP----DGVEGENSGPSS 85
Score = 80.6 bits (200), Expect = 9e-19
Identities = 20/84 (23%), Positives = 29/84 (34%), Gaps = 5/84 (5%)
Query: 288 LELHMKYIHEGADPYQCDICRKTFIRKEDLTRHCLLHTG----VKPHKCPICTKGFTMKS 343
+ H G PY C C KTF +K+ L H + C C K FT ++
Sbjct: 3 SGSSGR-THTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRN 61
Query: 344 SLKIHLLTHTKEPPKSCEVCGRAF 367
++ H E G +
Sbjct: 62 TMARHADNCAGPDGVEGENSGPSS 85
Score = 79.9 bits (198), Expect = 1e-18
Identities = 20/89 (22%), Positives = 29/89 (32%), Gaps = 10/89 (11%)
Query: 87 NLREHLRAHAGETKRKKKFKCDKCEKQFYGLTLLRIHERLH-----AEKLYECDICKNRF 141
+ R H GE K + C C+K F LL +H + + + C C F
Sbjct: 2 SSGSSGRTHTGE----KPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTF 57
Query: 142 PSSGAMKKHRRKHTGERPYECKEVCGRVF 170
M +H G E + G
Sbjct: 58 TRRNTMARHADNCAGPDGVEGEN-SGPSS 85
Score = 64.9 bits (159), Expect = 3e-13
Identities = 19/66 (28%), Positives = 26/66 (39%), Gaps = 4/66 (6%)
Query: 317 LTRHCLLHTGVKPHKCPICTKGFTMKSSLKIHLLTHTKEP----PKSCEVCGRAFIRQDC 372
HTG KP+ C C K F K L +H + C CG+ F R++
Sbjct: 3 SGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNT 62
Query: 373 LIRHLR 378
+ RH
Sbjct: 63 MARHAD 68
Score = 38.3 bits (90), Expect = 8e-04
Identities = 11/35 (31%), Positives = 16/35 (45%)
Query: 344 SLKIHLLTHTKEPPKSCEVCGRAFIRQDCLIRHLR 378
S THT E P +C C + F ++ L H +
Sbjct: 2 SSGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFK 36
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 77
Score = 94.1 bits (235), Expect = 1e-23
Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 2/74 (2%)
Query: 231 TLNRHMKTHSGVKPHVCEYCEKAFIQASQLKAHMFHHTGENG--HTCELCNKTFNRKARL 288
+ +THSG KP+ C C F Q+ +K H+ EN C C+ RK+ L
Sbjct: 2 SSGSSGRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDL 61
Query: 289 ELHMKYIHEGADPY 302
+H++ H + P
Sbjct: 62 GVHLRKQHSYSGPS 75
Score = 83.3 bits (207), Expect = 8e-20
Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 3/69 (4%)
Query: 145 GAMKKHRRKHTGERPYECKEVCGRVFNRKDNLREHLRAHAGETKRKKKFKCDKCEKQFYG 204
G+ R H+GE+PYEC C F + ++ H+ E KF C C+
Sbjct: 1 GSSGSSGRTHSGEKPYECYI-CHARFTQSGTMKMHILQKHTE--NVAKFHCPHCDTVIAR 57
Query: 205 LTLLRIHER 213
+ L +H R
Sbjct: 58 KSDLGVHLR 66
Score = 81.4 bits (202), Expect = 4e-19
Identities = 27/71 (38%), Positives = 31/71 (43%), Gaps = 5/71 (7%)
Query: 120 LRIHERLH-AEKLYECDICKNRFPSSGAMKKHRRKHTGE--RPYECKEVCGRVFNRKDNL 176
R H EK YEC IC RF SG MK H + E + C C V RK +L
Sbjct: 3 SGSSGRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPH-CDTVIARKSDL 61
Query: 177 REHLR-AHAGE 186
HLR H+
Sbjct: 62 GVHLRKQHSYS 72
Score = 81.4 bits (202), Expect = 4e-19
Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 2/67 (2%)
Query: 317 LTRHCLLHTGVKPHKCPICTKGFTMKSSLKIHLLTHTKEPPK--SCEVCGRAFIRQDCLI 374
H+G KP++C IC FT ++K+H+L E C C R+ L
Sbjct: 3 SGSSGRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLG 62
Query: 375 RHLRQKH 381
HLR++H
Sbjct: 63 VHLRKQH 69
Score = 76.0 bits (188), Expect = 3e-17
Identities = 21/73 (28%), Positives = 27/73 (36%), Gaps = 4/73 (5%)
Query: 288 LELHMKYIHEGADPYQCDICRKTFIRKEDLTRHCLLHTG--VKPHKCPICTKGFTMKSSL 345
+ H G PY+C IC F + + H L V CP C KS L
Sbjct: 3 SGSSGR-THSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDL 61
Query: 346 KIHLLT-HTKEPP 357
+HL H+ P
Sbjct: 62 GVHLRKQHSYSGP 74
Score = 73.3 bits (181), Expect = 2e-16
Identities = 15/78 (19%), Positives = 28/78 (35%), Gaps = 8/78 (10%)
Query: 87 NLREHLRAHAGETKRKKKFKCDKCEKQFYGLTLLRIHERLH---AEKLYECDICKNRFPS 143
+ R H+GE K ++C C +F +++H + C C
Sbjct: 2 SSGSSGRTHSGE----KPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIAR 57
Query: 144 SGAMKKH-RRKHTGERPY 160
+ H R++H+ P
Sbjct: 58 KSDLGVHLRKQHSYSGPS 75
Score = 43.7 bits (104), Expect = 8e-06
Identities = 12/38 (31%), Positives = 17/38 (44%)
Query: 344 SLKIHLLTHTKEPPKSCEVCGRAFIRQDCLIRHLRQKH 381
S TH+ E P C +C F + + H+ QKH
Sbjct: 2 SSGSSGRTHSGEKPYECYICHARFTQSGTMKMHILQKH 39
>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding
protein, transcription/DNA complex; HET: DNA; 1.60A {Mus
musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A
1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A*
1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C
Length = 90
Score = 94.1 bits (235), Expect = 2e-23
Identities = 32/115 (27%), Positives = 48/115 (41%), Gaps = 29/115 (25%)
Query: 157 ERPYEC-KEVCGRVFNRKDNLREHLRAHAGETKRKKKFKCDKCEKQFYGLTLLRIHERLH 215
ERPY C E C R F++ +L H+R H G+ K F+C C + F
Sbjct: 2 ERPYACPVESCDRRFSQSGSLTRHIRIHTGQ----KPFQCRICMRNFSRSD--------- 48
Query: 216 GLIERTCYARFAAKETLNRHMKTHSGVKPHVCEYCEKAFIQASQLKAHMFHHTGE 270
L H++TH+G KP C+ C + F ++ + K H H +
Sbjct: 49 ---------------HLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIHLRQ 88
Score = 92.9 bits (232), Expect = 4e-23
Identities = 29/87 (33%), Positives = 44/87 (50%), Gaps = 4/87 (4%)
Query: 103 KKFKCDK--CEKQFYGLTLLRIHERLH-AEKLYECDICKNRFPSSGAMKKHRRKHTGERP 159
+ + C C+++F L H R+H +K ++C IC F S + H R HTGE+P
Sbjct: 3 RPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 160 YECKEVCGRVFNRKDNLREHLRAHAGE 186
+ C CGR F R D + H + H +
Sbjct: 63 FACDI-CGRKFARSDERKRHTKIHLRQ 88
Score = 92.5 bits (231), Expect = 6e-23
Identities = 37/117 (31%), Positives = 52/117 (44%), Gaps = 31/117 (26%)
Query: 129 EKLYECDI--CKNRFPSSGAMKKHRRKHTGERPYECKEVCGRVFNRKDNLREHLRAHAGE 186
E+ Y C + C RF SG++ +H R HTG++P++C+ C R F+R D+L H+R H GE
Sbjct: 2 ERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRI-CMRNFSRSDHLTTHIRTHTGE 60
Query: 187 TKRKKKFKCDKCEKQFYGLTLLRIHERLHGLIERTCYARFAAKETLNRHMKTHSGVK 243
K F CD C ++F RH K H K
Sbjct: 61 ----KPFACDICGRKFARSD------------------------ERKRHTKIHLRQK 89
Score = 91.4 bits (228), Expect = 2e-22
Identities = 34/80 (42%), Positives = 46/80 (57%), Gaps = 2/80 (2%)
Query: 301 PYQCDI--CRKTFIRKEDLTRHCLLHTGVKPHKCPICTKGFTMKSSLKIHLLTHTKEPPK 358
PY C + C + F + LTRH +HTG KP +C IC + F+ L H+ THT E P
Sbjct: 4 PYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPF 63
Query: 359 SCEVCGRAFIRQDCLIRHLR 378
+C++CGR F R D RH +
Sbjct: 64 ACDICGRKFARSDERKRHTK 83
Score = 91.0 bits (227), Expect = 2e-22
Identities = 30/88 (34%), Positives = 47/88 (53%), Gaps = 3/88 (3%)
Query: 243 KPHVC--EYCEKAFIQASQLKAHMFHHTGENGHTCELCNKTFNRKARLELHMKYIHEGAD 300
+P+ C E C++ F Q+ L H+ HTG+ C +C + F+R L H++ H G
Sbjct: 3 RPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR-THTGEK 61
Query: 301 PYQCDICRKTFIRKEDLTRHCLLHTGVK 328
P+ CDIC + F R ++ RH +H K
Sbjct: 62 PFACDICGRKFARSDERKRHTKIHLRQK 89
Score = 84.1 bits (209), Expect = 7e-20
Identities = 27/77 (35%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
Query: 222 CYARFAAKETLNRHMKTHSGVKPHVCEYCEKAFIQASQLKAHMFHHTGENGHTCELCNKT 281
C RF+ +L RH++ H+G KP C C + F ++ L H+ HTGE C++C +
Sbjct: 12 CDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 282 FNRKARLELHMKYIHEG 298
F R + H K IH
Sbjct: 72 FARSDERKRHTK-IHLR 87
Score = 82.5 bits (205), Expect = 2e-19
Identities = 28/82 (34%), Positives = 41/82 (50%), Gaps = 5/82 (6%)
Query: 78 CGRVFNRKDNLREHLRAHAGETKRKKKFKCDKCEKQFYGLTLLRIHERLH-AEKLYECDI 136
C R F++ +L H+R H G+ K F+C C + F L H R H EK + CDI
Sbjct: 12 CDRRFSQSGSLTRHIRIHTGQ----KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDI 67
Query: 137 CKNRFPSSGAMKKHRRKHTGER 158
C +F S K+H + H ++
Sbjct: 68 CGRKFARSDERKRHTKIHLRQK 89
Score = 54.8 bits (133), Expect = 1e-09
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 4/52 (7%)
Query: 76 KVCGRVFNRKDNLREHLRAHAGETKRKKKFKCDKCEKQFYGLTLLRIHERLH 127
++C R F+R D+L H+R H GE K F CD C ++F + H ++H
Sbjct: 38 RICMRNFSRSDHLTTHIRTHTGE----KPFACDICGRKFARSDERKRHTKIH 85
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1
Length = 95
Score = 93.7 bits (234), Expect = 3e-23
Identities = 31/93 (33%), Positives = 41/93 (44%), Gaps = 4/93 (4%)
Query: 239 HSGVKPHVCEYCEKAFIQASQLKAHMFHHTGENGHTCELCNKTFNRKARLELHMKYIH-- 296
SG CE C K F L H H+GE ++C +C F RK R+ H++ H
Sbjct: 2 SSGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVR-SHDG 60
Query: 297 EGADPYQCDICRKTFIRKEDLTRHC-LLHTGVK 328
PY C C K F R + L H +H+G
Sbjct: 61 SVGKPYICQSCGKGFSRPDHLNGHIKQVHSGPS 93
Score = 93.3 bits (233), Expect = 4e-23
Identities = 32/88 (36%), Positives = 44/88 (50%), Gaps = 2/88 (2%)
Query: 296 HEGADPYQCDICRKTFIRKEDLTRHCLLHTGVKPHKCPICTKGFTMKSSLKIHLLTHTKE 355
G+ C+IC K F L RH L H+G KP+ CP+C F K + H+ +H
Sbjct: 2 SSGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGS 61
Query: 356 PPK--SCEVCGRAFIRQDCLIRHLRQKH 381
K C+ CG+ F R D L H++Q H
Sbjct: 62 VGKPYICQSCGKGFSRPDHLNGHIKQVH 89
Score = 92.9 bits (232), Expect = 5e-23
Identities = 29/120 (24%), Positives = 49/120 (40%), Gaps = 32/120 (26%)
Query: 154 HTGERPYECKEVCGRVFNRKDNLREHLRAHAGETKRKKKFKCDKCEKQFYGLTLLRIHER 213
+G C+ CG++F +L H +H+GE K + C C
Sbjct: 2 SSGSSGVACEI-CGKIFRDVYHLNRHKLSHSGE----KPYSCPVCGL------------- 43
Query: 214 LHGLIERTCYARFAAKETLNRHMKTHSG--VKPHVCEYCEKAFIQASQLKAHMFH-HTGE 270
RF K+ ++ H+++H G KP++C+ C K F + L H+ H+G
Sbjct: 44 -----------RFKRKDRMSYHVRSHDGSVGKPYICQSCGKGFSRPDHLNGHIKQVHSGP 92
Score = 87.5 bits (218), Expect = 4e-21
Identities = 28/85 (32%), Positives = 39/85 (45%), Gaps = 3/85 (3%)
Query: 129 EKLYECDICKNRFPSSGAMKKHRRKHTGERPYECKEVCGRVFNRKDNLREHLRAHAGETK 188
C+IC F + +H+ H+GE+PY C CG F RKD + H+R+H G
Sbjct: 5 SSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPV-CGLRFKRKDRMSYHVRSHDGSV- 62
Query: 189 RKKKFKCDKCEKQFYGLTLLRIHER 213
K + C C K F L H +
Sbjct: 63 -GKPYICQSCGKGFSRPDHLNGHIK 86
Score = 86.8 bits (216), Expect = 7e-21
Identities = 32/97 (32%), Positives = 45/97 (46%), Gaps = 9/97 (9%)
Query: 94 AHAGETKRKKKFKCDKCEKQFYGLTLLRIHERLH-AEKLYECDICKNRFPSSGAMKKHRR 152
+G C+ C K F + L H+ H EK Y C +C RF M H R
Sbjct: 1 GSSGS----SGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVR 56
Query: 153 KHTGE--RPYECKEVCGRVFNRKDNLREHL-RAHAGE 186
H G +PY C+ CG+ F+R D+L H+ + H+G
Sbjct: 57 SHDGSVGKPYICQS-CGKGFSRPDHLNGHIKQVHSGP 92
Score = 84.8 bits (211), Expect = 3e-20
Identities = 31/119 (26%), Positives = 44/119 (36%), Gaps = 30/119 (25%)
Query: 182 AHAGETKRKKKFKCDKCEKQFYGLTLLRIHERLHGLIERTCYARFAAKETLNRHMKTHSG 241
+G C+ C K F LNRH +HSG
Sbjct: 1 GSSGS----SGVACEICGKIF------------------------RDVYHLNRHKLSHSG 32
Query: 242 VKPHVCEYCEKAFIQASQLKAHMFHHTGENG--HTCELCNKTFNRKARLELHMKYIHEG 298
KP+ C C F + ++ H+ H G G + C+ C K F+R L H+K +H G
Sbjct: 33 EKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGFSRPDHLNGHIKQVHSG 91
Score = 46.3 bits (111), Expect = 1e-06
Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Query: 76 KVCGRVFNRKDNLREHLRAHAGETKRKKKFKCDKCEKQFYGLTLLRIHER 125
VCG F RKD + H+R+H G K + C C K F L H +
Sbjct: 39 PVCGLRFKRKDRMSYHVRSHDGSV--GKPYICQSCGKGFSRPDHLNGHIK 86
>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND,
transcription factor, kruppel-like factor, GC-box
promoter elements, structural genomics; NMR {Homo
sapiens}
Length = 100
Score = 93.1 bits (232), Expect = 5e-23
Identities = 37/128 (28%), Positives = 52/128 (40%), Gaps = 31/128 (24%)
Query: 141 FPSSGAMKKHRRKHTGERPYECKEVCGRVFNRKDNLREHLRAHAGETKRKKKFKCDKCEK 200
SSG + RR H + P C +V+ + +L+ HLR H GE K +KC
Sbjct: 3 SGSSGPDLEKRRIHYCDYPG-----CTKVYTKSSHLKAHLRTHTGE----KPYKCTWEG- 52
Query: 201 QFYGLTLLRIHERLHGLIERTCYARFAAKETLNRHMKTHSGVKPHVCEYCEKAFIQASQL 260
C RFA + L RH + H+G KP C C ++F ++ L
Sbjct: 53 ---------------------CDWRFARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHL 91
Query: 261 KAHMFHHT 268
HM H
Sbjct: 92 ALHMKRHQ 99
Score = 92.7 bits (231), Expect = 8e-23
Identities = 34/132 (25%), Positives = 49/132 (37%), Gaps = 35/132 (26%)
Query: 224 ARFAAKETLNRHMKTHSGVKPHVCEYCEKAFIQASQLKAHMFHHTGENGHTCELCNKTFN 283
+ + H P C K + ++S LKAH+ HTGE
Sbjct: 1 GSSGSSGPDLEKRRIHYCDYP----GCTKVYTKSSHLKAHLRTHTGEK------------ 44
Query: 284 RKARLELHMKYIHEGADPYQCDI--CRKTFIRKEDLTRHCLLHTGVKPHKCPICTKGFTM 341
PY+C C F R ++LTRH HTG KP +C +C + F+
Sbjct: 45 -----------------PYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCNRSFSR 87
Query: 342 KSSLKIHLLTHT 353
L +H+ H
Sbjct: 88 SDHLALHMKRHQ 99
Score = 90.8 bits (226), Expect = 4e-22
Identities = 33/91 (36%), Positives = 51/91 (56%), Gaps = 6/91 (6%)
Query: 98 ETKRKKKFKCDK--CEKQFYGLTLLRIHERLHA-EKLYECDI--CKNRFPSSGAMKKHRR 152
+ ++++ CD C K + + L+ H R H EK Y+C C RF S + +H R
Sbjct: 9 DLEKRRIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYR 68
Query: 153 KHTGERPYECKEVCGRVFNRKDNLREHLRAH 183
KHTG +P++C VC R F+R D+L H++ H
Sbjct: 69 KHTGAKPFQC-GVCNRSFSRSDHLALHMKRH 98
Score = 77.7 bits (192), Expect = 1e-17
Identities = 30/100 (30%), Positives = 38/100 (38%), Gaps = 7/100 (7%)
Query: 281 TFNRKARLELHMKYIHEGADPYQCDICRKTFIRKEDLTRHCLLHTGVKPHKC--PICTKG 338
+ + IH P C K + + L H HTG KP+KC C
Sbjct: 2 SSGSSGPDLEKRR-IHYCDYPG----CTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWR 56
Query: 339 FTMKSSLKIHLLTHTKEPPKSCEVCGRAFIRQDCLIRHLR 378
F L H HT P C VC R+F R D L H++
Sbjct: 57 FARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLALHMK 96
Score = 73.4 bits (181), Expect = 4e-16
Identities = 29/88 (32%), Positives = 43/88 (48%), Gaps = 2/88 (2%)
Query: 208 LRIHERLHGLIERTCYARFAAKETLNRHMKTHSGVKPHVC--EYCEKAFIQASQLKAHMF 265
R+H C + L H++TH+G KP+ C E C+ F ++ +L H
Sbjct: 9 DLEKRRIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYR 68
Query: 266 HHTGENGHTCELCNKTFNRKARLELHMK 293
HTG C +CN++F+R L LHMK
Sbjct: 69 KHTGAKPFQCGVCNRSFSRSDHLALHMK 96
Score = 69.2 bits (170), Expect = 1e-14
Identities = 25/81 (30%), Positives = 40/81 (49%), Gaps = 7/81 (8%)
Query: 78 CGRVFNRKDNLREHLRAHAGETKRKKKFKC--DKCEKQFYGLTLLRIHERLH-AEKLYEC 134
C +V+ + +L+ HLR H GE K +KC + C+ +F L H R H K ++C
Sbjct: 23 CTKVYTKSSHLKAHLRTHTGE----KPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQC 78
Query: 135 DICKNRFPSSGAMKKHRRKHT 155
+C F S + H ++H
Sbjct: 79 GVCNRSFSRSDHLALHMKRHQ 99
Score = 30.3 bits (69), Expect = 0.72
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 76 KVCGRVFNRKDNLREHLRAH 95
VC R F+R D+L H++ H
Sbjct: 79 GVCNRSFSRSDHLALHMKRH 98
>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine
zipper, X-RAY crystallography, structure-based design,
zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1
g.37.1.1 PDB: 1xf7_A
Length = 88
Score = 88.7 bits (221), Expect = 1e-21
Identities = 27/114 (23%), Positives = 36/114 (31%), Gaps = 27/114 (23%)
Query: 130 KLYECDICKNRFPSSGAMKKHRRKHTGERPYECKEVCGRVFNRKDNLREHLRAHAGETKR 189
K ++C IC F S + H R HTGE+P+ C CGR F R D + H
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDI-CGRKFARSDERKRHRDIQ-HI--- 56
Query: 190 KKKFKCDKCEKQFYGLTLLRIHERLHGLIERTCYARFAAKETLNRHMKTHSGVK 243
DK E+ L +K G +
Sbjct: 57 -LPILEDKVEELLSKNYHLENE---------------------VARLKKLVGER 88
Score = 87.6 bits (218), Expect = 3e-21
Identities = 23/84 (27%), Positives = 31/84 (36%), Gaps = 2/84 (2%)
Query: 301 PYQCDICRKTFIRKEDLTRHCLLHTGVKPHKCPICTKGFTMKSSLKIHLLTHTKEPPKSC 360
P+QC IC + F R + LT H HTG KP C IC + F K H P
Sbjct: 3 PFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQH-ILPILE 61
Query: 361 EVCGRAFIRQDCLIRHLRQKHRSH 384
+ + L + +
Sbjct: 62 DKVEELLSKNYHLENE-VARLKKL 84
Score = 86.0 bits (214), Expect = 1e-20
Identities = 21/90 (23%), Positives = 33/90 (36%), Gaps = 5/90 (5%)
Query: 242 VKPHVCEYCEKAFIQASQLKAHMFHHTGENGHTCELCNKTFNRKARLELHMKYIHEGADP 301
+KP C C + F ++ L H+ HTGE C++C + F R + H I P
Sbjct: 1 MKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRD-IQ-HILP 58
Query: 302 YQCDICRKTFIRKEDLTRHCLL---HTGVK 328
D + + L G +
Sbjct: 59 ILEDKVEELLSKNYHLENEVARLKKLVGER 88
Score = 85.2 bits (212), Expect = 2e-20
Identities = 25/88 (28%), Positives = 36/88 (40%), Gaps = 6/88 (6%)
Query: 103 KKFKCDKCEKQFYGLTLLRIHERLH-AEKLYECDICKNRFPSSGAMKKHRRKHTGERPYE 161
K F+C C + F L H R H EK + CDIC +F S K+HR P
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQH-ILPIL 60
Query: 162 CKEVCGRVFNRKDNLREH---LRAHAGE 186
+ + ++ +L L+ GE
Sbjct: 61 EDK-VEELLSKNYHLENEVARLKKLVGE 87
Score = 81.8 bits (203), Expect = 3e-19
Identities = 23/86 (26%), Positives = 37/86 (43%), Gaps = 7/86 (8%)
Query: 76 KVCGRVFNRKDNLREHLRAHAGETKRKKKFKCDKCEKQFYGLTLLRIHERLHAEKLYECD 135
++C R F+R D+L H+R H GE K F CD C ++F + H + D
Sbjct: 7 RICMRNFSRSDHLTTHIRTHTGE----KPFACDICGRKFARSDERKRHRDIQHILPILED 62
Query: 136 ICKNRFPSSGAMKKHR---RKHTGER 158
+ + ++ +K GER
Sbjct: 63 KVEELLSKNYHLENEVARLKKLVGER 88
Score = 73.7 bits (182), Expect = 2e-16
Identities = 20/110 (18%), Positives = 37/110 (33%), Gaps = 27/110 (24%)
Query: 191 KKFKCDKCEKQFYGLTLLRIHERLHGLIERTCYARFAAKETLNRHMKTHSGVKPHVCEYC 250
K F+C C + F + + L H++TH+G KP C+ C
Sbjct: 2 KPFQCRICMRNF------------------------SRSDHLTTHIRTHTGEKPFACDIC 37
Query: 251 EKAFIQASQLKAHMFHHTGENGHTCELCNKTFNRKARLELHMKY--IHEG 298
+ F ++ + K H + + ++ LE + G
Sbjct: 38 GRKFARSDERKRHRDIQH-ILPILEDKVEELLSKNYHLENEVARLKKLVG 86
Score = 67.1 bits (165), Expect = 5e-14
Identities = 22/52 (42%), Positives = 30/52 (57%)
Query: 327 VKPHKCPICTKGFTMKSSLKIHLLTHTKEPPKSCEVCGRAFIRQDCLIRHLR 378
+KP +C IC + F+ L H+ THT E P +C++CGR F R D RH
Sbjct: 1 MKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRD 52
>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding,
transcription, metal-binding, DNA, protein, nucleus,
activator; 1.70A {Mus musculus} PDB: 2wbu_A
Length = 89
Score = 88.4 bits (220), Expect = 2e-21
Identities = 31/87 (35%), Positives = 45/87 (51%), Gaps = 4/87 (4%)
Query: 100 KRKKKFKCDKCEKQFYGLTLLRIHERLHA-EKLYECDI--CKNRFPSSGAMKKHRRKHTG 156
C K + + L+ H R H EK Y CD C +F S + +H RKHTG
Sbjct: 3 TATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTG 62
Query: 157 ERPYECKEVCGRVFNRKDNLREHLRAH 183
RP++C++ C R F+R D+L H++ H
Sbjct: 63 HRPFQCQK-CDRAFSRSDHLALHMKRH 88
Score = 86.0 bits (214), Expect = 1e-20
Identities = 32/116 (27%), Positives = 45/116 (38%), Gaps = 31/116 (26%)
Query: 239 HSGVKPHVCEYCEKAFIQASQLKAHMFHHTGENGHTCELCNKTFNRKARLELHMKYIHEG 298
+ C K + ++S LKAH+ HTGE
Sbjct: 2 RTATHTCDYAGCGKTYTKSSHLKAHLRTHTGEK--------------------------- 34
Query: 299 ADPYQCDI--CRKTFIRKEDLTRHCLLHTGVKPHKCPICTKGFTMKSSLKIHLLTH 352
PY CD C F R ++LTRH HTG +P +C C + F+ L +H+ H
Sbjct: 35 --PYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLALHMKRH 88
Score = 85.7 bits (213), Expect = 2e-20
Identities = 30/88 (34%), Positives = 41/88 (46%), Gaps = 5/88 (5%)
Query: 129 EKLYECDICKNRFPSSGAMKKHRRKHTGERPYECK-EVCGRVFNRKDNLREHLRAHAGET 187
+ C + S +K H R HTGE+PY C + CG F R D L H R H G
Sbjct: 5 THTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGH- 63
Query: 188 KRKKKFKCDKCEKQFYGLTLLRIHERLH 215
+ F+C KC++ F L +H + H
Sbjct: 64 ---RPFQCQKCDRAFSRSDHLALHMKRH 88
Score = 85.3 bits (212), Expect = 3e-20
Identities = 31/115 (26%), Positives = 48/115 (41%), Gaps = 27/115 (23%)
Query: 153 KHTGERPYECKEVCGRVFNRKDNLREHLRAHAGETKRKKKFKCDKCEKQFYGLTLLRIHE 212
K T + CG+ + + +L+ HLR H GE K + CD
Sbjct: 1 KRTATHTCDYAG-CGKTYTKSSHLKAHLRTHTGE----KPYHCDWDG------------- 42
Query: 213 RLHGLIERTCYARFAAKETLNRHMKTHSGVKPHVCEYCEKAFIQASQLKAHMFHH 267
C +FA + L RH + H+G +P C+ C++AF ++ L HM H
Sbjct: 43 ---------CGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLALHMKRH 88
Score = 79.1 bits (196), Expect = 3e-18
Identities = 28/92 (30%), Positives = 33/92 (35%), Gaps = 6/92 (6%)
Query: 296 HEGADPYQCDICRKTFIRKEDLTRHCLLHTGVKPHKC--PICTKGFTMKSSLKIHLLTHT 353
C KT+ + L H HTG KP+ C C F L H HT
Sbjct: 2 RTATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHT 61
Query: 354 KEPPKSCEVCGRAFIRQDCLIRHLRQKHRSHL 385
P C+ C RAF R D HL + H
Sbjct: 62 GHRPFQCQKCDRAFSRSD----HLALHMKRHF 89
Score = 71.0 bits (175), Expect = 2e-15
Identities = 28/111 (25%), Positives = 41/111 (36%), Gaps = 27/111 (24%)
Query: 188 KRKKKFKCDKCEKQFYGLTLLRIHERLHGLIERTCYARFAAKETLNRHMKTHSGVKPHVC 247
C K + + L+ H R TH+G KP+ C
Sbjct: 3 TATHTCDYAGCGKTYTKSSHLKAHLR------------------------THTGEKPYHC 38
Query: 248 --EYCEKAFIQASQLKAHMFHHTGENGHTCELCNKTFNRKARLELHMKYIH 296
+ C F ++ +L H HTG C+ C++ F+R L LHMK H
Sbjct: 39 DWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLALHMK-RH 88
Score = 49.1 bits (118), Expect = 1e-07
Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 4/50 (8%)
Query: 78 CGRVFNRKDNLREHLRAHAGETKRKKKFKCDKCEKQFYGLTLLRIHERLH 127
CG F R D L H R H G + F+C KC++ F L +H + H
Sbjct: 43 CGWKFARSDELTRHYRKHTGH----RPFQCQKCDRAFSRSDHLALHMKRH 88
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain,
protein-DNA complex, DNA-B metal-binding, nucleus; HET:
DNA; NMR {Rattus norvegicus}
Length = 82
Score = 86.7 bits (216), Expect = 7e-21
Identities = 34/79 (43%), Positives = 46/79 (58%), Gaps = 1/79 (1%)
Query: 275 CELCNKTFNRKARLELHMKYIHEGADPYQCDICRKTFIRKEDLTRHCLLHTGVKPHKCPI 334
C++C K+F R + L H+ IH PY C C K F +K D+ +H +HTG KPHKC +
Sbjct: 4 CKICGKSFKRSSTLSTHLL-IHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQV 62
Query: 335 CTKGFTMKSSLKIHLLTHT 353
C K F+ S+L H HT
Sbjct: 63 CGKAFSQSSNLITHSRKHT 81
Score = 86.3 bits (215), Expect = 7e-21
Identities = 32/82 (39%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Query: 105 FKCDKCEKQFYGLTLLRIHERLH-AEKLYECDICKNRFPSSGAMKKHRRKHTGERPYECK 163
F C C K F + L H +H + Y C C RF MKKH HTGE+P++C+
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQ 61
Query: 164 EVCGRVFNRKDNLREHLRAHAG 185
CG+ F++ NL H R H G
Sbjct: 62 V-CGKAFSQSSNLITHSRKHTG 82
Score = 85.9 bits (214), Expect = 1e-20
Identities = 33/77 (42%), Positives = 44/77 (57%)
Query: 302 YQCDICRKTFIRKEDLTRHCLLHTGVKPHKCPICTKGFTMKSSLKIHLLTHTKEPPKSCE 361
+ C IC K+F R L+ H L+H+ +P+ C C K F KS +K H HT E P C+
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQ 61
Query: 362 VCGRAFIRQDCLIRHLR 378
VCG+AF + LI H R
Sbjct: 62 VCGKAFSQSSNLITHSR 78
Score = 80.2 bits (199), Expect = 1e-18
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 1/80 (1%)
Query: 247 CEYCEKAFIQASQLKAHMFHHTGENGHTCELCNKTFNRKARLELHMKYIHEGADPYQCDI 306
C+ C K+F ++S L H+ H+ + C+ C K F++K+ ++ H +IH G P++C +
Sbjct: 4 CKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKH-TFIHTGEKPHKCQV 62
Query: 307 CRKTFIRKEDLTRHCLLHTG 326
C K F + +L H HTG
Sbjct: 63 CGKAFSQSSNLITHSRKHTG 82
Score = 79.4 bits (197), Expect = 2e-18
Identities = 34/110 (30%), Positives = 45/110 (40%), Gaps = 29/110 (26%)
Query: 160 YECKEVCGRVFNRKDNLREHLRAHAGETKRKKKFKCDKCEKQFYGLTLLRIHERLHGLIE 219
++CK CG+ F R L HL H+ + + C C K
Sbjct: 2 FDCKI-CGKSFKRSSTLSTHLLIHSDT----RPYPCQYCGK------------------- 37
Query: 220 RTCYARFAAKETLNRHMKTHSGVKPHVCEYCEKAFIQASQLKAHMFHHTG 269
RF K + +H H+G KPH C+ C KAF Q+S L H HTG
Sbjct: 38 -----RFHQKSDMKKHTFIHTGEKPHKCQVCGKAFSQSSNLITHSRKHTG 82
Score = 75.9 bits (188), Expect = 4e-17
Identities = 30/73 (41%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 226 FAAKETLNRHMKTHSGVKPHVCEYCEKAFIQASQLKAHMFHHTGENGHTCELCNKTFNRK 285
F TL+ H+ HS +P+ C+YC K F Q S +K H F HTGE H C++C K F++
Sbjct: 11 FKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGKAFSQS 70
Query: 286 ARLELHMKYIHEG 298
+ L H + H G
Sbjct: 71 SNLITHSR-KHTG 82
Score = 46.3 bits (111), Expect = 1e-06
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 4/52 (7%)
Query: 76 KVCGRVFNRKDNLREHLRAHAGETKRKKKFKCDKCEKQFYGLTLLRIHERLH 127
+ CG+ F++K ++++H H GE K KC C K F + L H R H
Sbjct: 33 QYCGKRFHQKSDMKKHTFIHTGE----KPHKCQVCGKAFSQSSNLITHSRKH 80
Score = 29.3 bits (67), Expect = 1.1
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 76 KVCGRVFNRKDNLREHLRAHAG 97
+VCG+ F++ NL H R H G
Sbjct: 61 QVCGKAFSQSSNLITHSRKHTG 82
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast
structural genomics consortiu PSI-biology, protein
structure initiative; NMR {Homo sapiens}
Length = 74
Score = 81.3 bits (202), Expect = 4e-19
Identities = 28/68 (41%), Positives = 38/68 (55%), Gaps = 2/68 (2%)
Query: 120 LRIHERLH-AEKLYECDICKNRFPSSGAMKKHRRKHTGERPYECKEVCGRVFNRKDNLRE 178
H + ++K Y+CD C+ F G + H+ HTGE+PY C CG FNR NL+
Sbjct: 5 HHHHSHMTHSDKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNI-CGAQFNRPANLKT 63
Query: 179 HLRAHAGE 186
H R H+GE
Sbjct: 64 HTRIHSGE 71
Score = 77.1 bits (191), Expect = 1e-17
Identities = 25/71 (35%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Query: 232 LNRHMKTHSGVKPHVCEYCEKAFIQASQLKAHMFHHTGENGHTCELCNKTFNRKARLELH 291
+ H KP+ C+ C+ +F L +H HTGE + C +C FNR A L+ H
Sbjct: 5 HHHHSHMTHSDKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTH 64
Query: 292 MKYIHEGADPY 302
+ IH G PY
Sbjct: 65 TR-IHSGEKPY 74
Score = 75.6 bits (187), Expect = 4e-17
Identities = 25/70 (35%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Query: 288 LELHMKYIHEGADPYQCDICRKTFIRKEDLTRHCLLHTGVKPHKCPICTKGFTMKSSLKI 347
H + PY+CD C+ +F K +L H +HTG KP++C IC F ++LK
Sbjct: 5 HHHHSH-MTHSDKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKT 63
Query: 348 HLLTHTKEPP 357
H H+ E P
Sbjct: 64 HTRIHSGEKP 73
Score = 73.3 bits (181), Expect = 2e-16
Identities = 25/97 (25%), Positives = 33/97 (34%), Gaps = 29/97 (29%)
Query: 149 KHRRKHTGERPYECKEVCGRVFNRKDNLREHLRAHAGETKRKKKFKCDKCEKQFYGLTLL 208
H ++PY+C C F K NL H H GE K ++C+ C QF
Sbjct: 7 HHSHMTHSDKPYKCDR-CQASFRYKGNLASHKTVHTGE----KPYRCNICGAQF------ 55
Query: 209 RIHERLHGLIERTCYARFAAKETLNRHMKTHSGVKPH 245
L H + HSG KP+
Sbjct: 56 ------------------NRPANLKTHTRIHSGEKPY 74
Score = 73.3 bits (181), Expect = 2e-16
Identities = 22/73 (30%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
Query: 258 SQLKAHMFHHTGENGHTCELCNKTFNRKARLELHMKYIHEGADPYQCDICRKTFIRKEDL 317
H + + C+ C +F K L H +H G PY+C+IC F R +L
Sbjct: 3 HHHHHHSHMTHSDKPYKCDRCQASFRYKGNLASHKT-VHTGEKPYRCNICGAQFNRPANL 61
Query: 318 TRHCLLHTGVKPH 330
H +H+G KP+
Sbjct: 62 KTHTRIHSGEKPY 74
Score = 71.3 bits (176), Expect = 1e-15
Identities = 25/75 (33%), Positives = 37/75 (49%), Gaps = 5/75 (6%)
Query: 87 NLREHLRAHAGETKRKKKFKCDKCEKQFYGLTLLRIHERLHA-EKLYECDICKNRFPSSG 145
+ H + K +KCD+C+ F L H+ +H EK Y C+IC +F
Sbjct: 4 HHHHHSHMTHSD----KPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPA 59
Query: 146 AMKKHRRKHTGERPY 160
+K H R H+GE+PY
Sbjct: 60 NLKTHTRIHSGEKPY 74
Score = 70.6 bits (174), Expect = 2e-15
Identities = 22/62 (35%), Positives = 26/62 (41%)
Query: 317 LTRHCLLHTGVKPHKCPICTKGFTMKSSLKIHLLTHTKEPPKSCEVCGRAFIRQDCLIRH 376
H + KP+KC C F K +L H HT E P C +CG F R L H
Sbjct: 5 HHHHSHMTHSDKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTH 64
Query: 377 LR 378
R
Sbjct: 65 TR 66
Score = 64.4 bits (158), Expect = 3e-13
Identities = 23/96 (23%), Positives = 33/96 (34%), Gaps = 28/96 (29%)
Query: 175 NLREHLRAHAGETKRKKKFKCDKCEKQFYGLTLLRIHERLHGLIERTCYARFAAKETLNR 234
+ H + K +KCD+C+ F K L
Sbjct: 4 HHHHHSHMTHSD----KPYKCDRCQASF------------------------RYKGNLAS 35
Query: 235 HMKTHSGVKPHVCEYCEKAFIQASQLKAHMFHHTGE 270
H H+G KP+ C C F + + LK H H+GE
Sbjct: 36 HKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGE 71
Score = 40.9 bits (97), Expect = 7e-05
Identities = 8/38 (21%), Positives = 12/38 (31%)
Query: 341 MKSSLKIHLLTHTKEPPKSCEVCGRAFIRQDCLIRHLR 378
M H + P C+ C +F + L H
Sbjct: 1 MGHHHHHHSHMTHSDKPYKCDRCQASFRYKGNLASHKT 38
Score = 32.4 bits (75), Expect = 0.059
Identities = 12/23 (52%), Positives = 15/23 (65%)
Query: 76 KVCGRVFNRKDNLREHLRAHAGE 98
+CG FNR NL+ H R H+GE
Sbjct: 49 NICGAQFNRPANLKTHTRIHSGE 71
>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 79
Score = 81.1 bits (201), Expect = 5e-19
Identities = 20/77 (25%), Positives = 32/77 (41%), Gaps = 4/77 (5%)
Query: 267 HTGENGHTCEL--CNKTFNRKARLELHMKYIHEGADPYQCD--ICRKTFIRKEDLTRHCL 322
+G +G C+ C + F+ + L H KY H + C C K+F K+ L H
Sbjct: 2 SSGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMK 61
Query: 323 LHTGVKPHKCPICTKGF 339
LH+ + + C
Sbjct: 62 LHSDTRDYICEFSGPSS 78
Score = 81.1 bits (201), Expect = 6e-19
Identities = 24/103 (23%), Positives = 36/103 (34%), Gaps = 28/103 (27%)
Query: 154 HTGERPYECK-EVCGRVFNRKDNLREHLR-AHAGETKRKKKFKCDKCEKQFYGLTLLRIH 211
+G C CGR+F+ + L H + H + K F C
Sbjct: 2 SSGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQ----KSFSCP--------------- 42
Query: 212 ERLHGLIERTCYARFAAKETLNRHMKTHSGVKPHVCEYCEKAF 254
E C F K+ L HMK HS + ++CE+ +
Sbjct: 43 -------EPACGKSFNFKKHLKEHMKLHSDTRDYICEFSGPSS 78
Score = 80.7 bits (200), Expect = 8e-19
Identities = 22/77 (28%), Positives = 29/77 (37%), Gaps = 5/77 (6%)
Query: 296 HEGADPYQCDI--CRKTFIRKEDLTRHC-LLHTGVKPHKCP--ICTKGFTMKSSLKIHLL 350
G+ CD C + F ++ L H H K CP C K F K LK H+
Sbjct: 2 SSGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMK 61
Query: 351 THTKEPPKSCEVCGRAF 367
H+ CE G +
Sbjct: 62 LHSDTRDYICEFSGPSS 78
Score = 67.2 bits (165), Expect = 4e-14
Identities = 18/83 (21%), Positives = 29/83 (34%), Gaps = 11/83 (13%)
Query: 94 AHAGETKRKKKFKCDK--CEKQFYGLTLLRIHERLH--AEKLYECD--ICKNRFPSSGAM 147
+G CD C + F L H++ +K + C C F +
Sbjct: 1 GSSGS----SGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHL 56
Query: 148 KKHRRKHTGERPYECKEVCGRVF 170
K+H + H+ R Y C+ G
Sbjct: 57 KEHMKLHSDTRDYICEF-SGPSS 78
Score = 66.4 bits (163), Expect = 7e-14
Identities = 22/104 (21%), Positives = 30/104 (28%), Gaps = 29/104 (27%)
Query: 182 AHAGETKRKKKFKCDKCEKQFYGLTLLRIHERLHGLIERTCYARFAAKETLNRHMK-THS 240
+G CD C F+ ++ LN H K H
Sbjct: 1 GSSGS----SGMPCDFPG----------------------CGRIFSNRQYLNHHKKYQHI 34
Query: 241 GVKPHVCEY--CEKAFIQASQLKAHMFHHTGENGHTCELCNKTF 282
K C C K+F LK HM H+ + CE +
Sbjct: 35 HQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICEFSGPSS 78
Score = 58.7 bits (143), Expect = 4e-11
Identities = 14/60 (23%), Positives = 24/60 (40%), Gaps = 5/60 (8%)
Query: 324 HTGVKPHKCPI--CTKGFTMKSSLKIHL-LTHTKEPPKSCE--VCGRAFIRQDCLIRHLR 378
+G C C + F+ + L H H + SC CG++F + L H++
Sbjct: 2 SSGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMK 61
Score = 42.5 bits (101), Expect = 2e-05
Identities = 11/43 (25%), Positives = 20/43 (46%), Gaps = 5/43 (11%)
Query: 72 CTYIKVCGRVFNRKDNLREHLRAHAGETKRKKKFKCDKCEKQF 114
C CG+ FN K +L+EH++ H+ + + C+
Sbjct: 41 CPE-PACGKSFNFKKHLKEHMKLHSDT----RDYICEFSGPSS 78
Score = 33.7 bits (78), Expect = 0.023
Identities = 8/32 (25%), Positives = 13/32 (40%), Gaps = 2/32 (6%)
Query: 352 HTKEPPKSCEV--CGRAFIRQDCLIRHLRQKH 381
+ C+ CGR F + L H + +H
Sbjct: 2 SSGSSGMPCDFPGCGRIFSNRQYLNHHKKYQH 33
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN
domain containing protein 16, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 77
Score = 80.2 bits (199), Expect = 1e-18
Identities = 27/68 (39%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Query: 120 LRIHERLHA-EKLYECDICKNRFPSSGAMKKHRRKHTGERPYECKEVCGRVFNRKDNLRE 178
E + Y+CD C F S + KHRR HTGE+PY+C E CG+ F ++ +L
Sbjct: 6 SGRSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDE-CGKAFIQRSHLIG 64
Query: 179 HLRAHAGE 186
H R H G
Sbjct: 65 HHRVHTGS 72
Score = 77.5 bits (192), Expect = 9e-18
Identities = 27/73 (36%), Positives = 39/73 (53%), Gaps = 5/73 (6%)
Query: 143 SSGAMKKHRRKHTGERPYECKEVCGRVFNRKDNLREHLRAHAGETKRKKKFKCDKCEKQF 202
SSG+ + + R Y+C E CG+ F+ +L +H R H GE K +KCD+C K F
Sbjct: 2 SSGSSGRSEWQQRERRRYKCDE-CGKSFSHSSDLSKHRRTHTGE----KPYKCDECGKAF 56
Query: 203 YGLTLLRIHERLH 215
+ L H R+H
Sbjct: 57 IQRSHLIGHHRVH 69
Score = 75.6 bits (187), Expect = 4e-17
Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 1/76 (1%)
Query: 256 QASQLKAHMFHHTGENGHTCELCNKTFNRKARLELHMKYIHEGADPYQCDICRKTFIRKE 315
+ + + C+ C K+F+ + L H + H G PY+CD C K FI++
Sbjct: 2 SSGSSGRSEWQQRERRRYKCDECGKSFSHSSDLSKHRR-THTGEKPYKCDECGKAFIQRS 60
Query: 316 DLTRHCLLHTGVKPHK 331
L H +HTG P
Sbjct: 61 HLIGHHRVHTGSGPSS 76
Score = 71.7 bits (177), Expect = 9e-16
Identities = 25/63 (39%), Positives = 31/63 (49%)
Query: 295 IHEGADPYQCDICRKTFIRKEDLTRHCLLHTGVKPHKCPICTKGFTMKSSLKIHLLTHTK 354
Y+CD C K+F DL++H HTG KP+KC C K F +S L H HT
Sbjct: 12 QQRERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTG 71
Query: 355 EPP 357
P
Sbjct: 72 SGP 74
Score = 71.3 bits (176), Expect = 1e-15
Identities = 26/69 (37%), Positives = 33/69 (47%), Gaps = 4/69 (5%)
Query: 316 DLTRHCLLHTGVKPHKCPICTKGFTMKSSLKIHLLTHTKEPPKSCEVCGRAFIRQDCLIR 375
R + +KC C K F+ S L H THT E P C+ CG+AFI++ LI
Sbjct: 5 SSGRSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIG 64
Query: 376 HLRQKHRSH 384
H HR H
Sbjct: 65 H----HRVH 69
Score = 69.0 bits (170), Expect = 8e-15
Identities = 23/76 (30%), Positives = 31/76 (40%), Gaps = 5/76 (6%)
Query: 87 NLREHLRAHAGETKRKKKFKCDKCEKQFYGLTLLRIHERLH-AEKLYECDICKNRFPSSG 145
+ +++KCD+C K F + L H R H EK Y+CD C F
Sbjct: 5 SSGRSEWQQRER----RRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRS 60
Query: 146 AMKKHRRKHTGERPYE 161
+ H R HTG P
Sbjct: 61 HLIGHHRVHTGSGPSS 76
Score = 59.4 bits (145), Expect = 2e-11
Identities = 26/96 (27%), Positives = 38/96 (39%), Gaps = 28/96 (29%)
Query: 175 NLREHLRAHAGETKRKKKFKCDKCEKQFYGLTLLRIHERLHGLIERTCYARFAAKETLNR 234
+ +++KCD+C K F+ L++
Sbjct: 5 SSGRSEWQQRER----RRYKCDECGK------------------------SFSHSSDLSK 36
Query: 235 HMKTHSGVKPHVCEYCEKAFIQASQLKAHMFHHTGE 270
H +TH+G KP+ C+ C KAFIQ S L H HTG
Sbjct: 37 HRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGS 72
Score = 39.3 bits (93), Expect = 2e-04
Identities = 8/37 (21%), Positives = 13/37 (35%)
Query: 342 KSSLKIHLLTHTKEPPKSCEVCGRAFIRQDCLIRHLR 378
S + C+ CG++F L +H R
Sbjct: 3 SGSSGRSEWQQRERRRYKCDECGKSFSHSSDLSKHRR 39
Score = 30.1 bits (69), Expect = 0.51
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 78 CGRVFNRKDNLREHLRAHAGE 98
CG+ F ++ +L H R H G
Sbjct: 52 CGKAFIQRSHLIGHHRVHTGS 72
>2j7j_A Transcription factor IIIA; zinc finger module, alternative
initiation, nuclear protein, phosphorylation,
hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus
laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B
2hgh_A
Length = 85
Score = 80.4 bits (199), Expect = 1e-18
Identities = 26/88 (29%), Positives = 36/88 (40%), Gaps = 6/88 (6%)
Query: 131 LYECDI--CKNRFPSSGAMKKHRRKHTGERPYECK-EVCGRVFNRKDNLREHLRAHAGET 187
+Y C C F +K H+ HT + PYEC E C + F+ L+ H + HAG
Sbjct: 1 MYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGY- 59
Query: 188 KRKKKFKCDKCEKQFYGLTLLRIHERLH 215
KK C K + L+ H
Sbjct: 60 PCKKDDSCSFVGKTWT--LYLKHVAECH 85
Score = 76.1 bits (188), Expect = 3e-17
Identities = 27/80 (33%), Positives = 40/80 (50%), Gaps = 5/80 (6%)
Query: 245 HVCEY--CEKAFIQASQLKAHMFHHTGENGHTC--ELCNKTFNRKARLELHMKYIHEGAD 300
+VC + C KAF + +QLK H F HT + + C E C+K F+ +RL+ H K +H G
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEK-VHAGYP 60
Query: 301 PYQCDICRKTFIRKEDLTRH 320
+ D C +H
Sbjct: 61 CKKDDSCSFVGKTWTLYLKH 80
Score = 75.0 bits (185), Expect = 9e-17
Identities = 24/84 (28%), Positives = 34/84 (40%), Gaps = 4/84 (4%)
Query: 302 YQCDI--CRKTFIRKEDLTRHCLLHTGVKPHKC--PICTKGFTMKSSLKIHLLTHTKEPP 357
Y C C K F + L H HT P++C C K F++ S LK H H P
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPC 61
Query: 358 KSCEVCGRAFIRQDCLIRHLRQKH 381
K + C ++H+ + H
Sbjct: 62 KKDDSCSFVGKTWTLYLKHVAECH 85
Score = 68.4 bits (168), Expect = 1e-14
Identities = 19/77 (24%), Positives = 28/77 (36%), Gaps = 2/77 (2%)
Query: 222 CYARFAAKETLNRHMKTHSGVKPHVCEY--CEKAFIQASQLKAHMFHHTGENGHTCELCN 279
C F L H +H+ P+ C + C+K F S+LK H H G + C+
Sbjct: 9 CGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCS 68
Query: 280 KTFNRKARLELHMKYIH 296
H+ H
Sbjct: 69 FVGKTWTLYLKHVAECH 85
Score = 61.5 bits (150), Expect = 5e-12
Identities = 20/112 (17%), Positives = 34/112 (30%), Gaps = 35/112 (31%)
Query: 72 CTYIKVCGRVFNRKDNLREHLRAHAGETKRKKKFKCDKCEKQFYGLTLLRIHERLHAEKL 131
C + + CG+ F + + L+ H +H +
Sbjct: 4 CHF-ENCGKAFKKHNQLKVHQFSHTQ-------------------------------QLP 31
Query: 132 YECD--ICKNRFPSSGAMKKHRRKHTGERPYECKEVCGRVFNRKDNLREHLR 181
YEC C RF +K+H + H G + C V +H+
Sbjct: 32 YECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDS-CSFVGKTWTLYLKHVA 82
Score = 44.5 bits (106), Expect = 5e-06
Identities = 14/56 (25%), Positives = 22/56 (39%), Gaps = 4/56 (7%)
Query: 72 CTYIKVCGRVFNRKDNLREHLRAHAGETKRKKKFKCDKCEKQFYGLTLLRIHERLH 127
C + + C + F+ L+ H + HAG KK C K + L+ H
Sbjct: 34 CPH-EGCDKRFSLPSRLKRHEKVHAGY-PCKKDDSCSFVGKTWT--LYLKHVAECH 85
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 78
Score = 79.8 bits (197), Expect = 2e-18
Identities = 16/76 (21%), Positives = 21/76 (27%), Gaps = 3/76 (3%)
Query: 239 HSGVKPHVCEYCEKAFIQASQLKAHMFHHTGENGH---TCELCNKTFNRKARLELHMKYI 295
SG CE C Q + L H H CE C K F + + H
Sbjct: 2 SSGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKS 61
Query: 296 HEGADPYQCDICRKTF 311
H + +
Sbjct: 62 HPALLLAPQESSGPSS 77
Score = 74.4 bits (183), Expect = 1e-16
Identities = 14/74 (18%), Positives = 25/74 (33%), Gaps = 4/74 (5%)
Query: 129 EKLYECDICKNRFPSSGAMKKHRRKHT---GERPYECKEVCGRVFNRKDNLREHLRAHAG 185
+C+IC ++ H+RKH + C E CG+ F + D++ H
Sbjct: 5 SSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPC-EFCGKRFEKPDSVAAHRSKSHP 63
Query: 186 ETKRKKKFKCDKCE 199
+
Sbjct: 64 ALLLAPQESSGPSS 77
Score = 74.0 bits (182), Expect = 2e-16
Identities = 17/61 (27%), Positives = 25/61 (40%), Gaps = 3/61 (4%)
Query: 324 HTGVKPHKCPICTKGFTMKSSLKIHLLTHTK---EPPKSCEVCGRAFIRQDCLIRHLRQK 380
+G +C IC K+SL H H + CE CG+ F + D + H +
Sbjct: 2 SSGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKS 61
Query: 381 H 381
H
Sbjct: 62 H 62
Score = 73.2 bits (180), Expect = 3e-16
Identities = 18/76 (23%), Positives = 23/76 (30%), Gaps = 4/76 (5%)
Query: 296 HEGADPYQCDICRKTFIRKEDLTRHCLLHT---GVKPHKCPICTKGFTMKSSLKIHLLTH 352
G+ QC+IC T +K L H H C C K F S+ H
Sbjct: 2 SSGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKS 61
Query: 353 TKEP-PKSCEVCGRAF 367
E G +
Sbjct: 62 HPALLLAPQESSGPSS 77
Score = 69.7 bits (171), Expect = 5e-15
Identities = 17/62 (27%), Positives = 26/62 (41%), Gaps = 2/62 (3%)
Query: 154 HTGERPYECKEVCGRVFNRKDNLREHLRAHAGETKRKKKFKCDKCEKQFYGLTLLRIHER 213
+G +C E+CG +K +L H R HA +F C+ C K+F + H
Sbjct: 2 SSGSSGLQC-EICGFTCRQKASLNWHQRKHAETVA-ALRFPCEFCGKRFEKPDSVAAHRS 59
Query: 214 LH 215
Sbjct: 60 KS 61
Score = 65.5 bits (160), Expect = 1e-13
Identities = 17/80 (21%), Positives = 26/80 (32%), Gaps = 8/80 (10%)
Query: 95 HAGETKRKKKFKCDKCEKQFYGLTLLRIHERLH----AEKLYECDICKNRFPSSGAMKKH 150
+G +C+ C L H+R H A + C+ C RF ++ H
Sbjct: 2 SSGS----SGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAH 57
Query: 151 RRKHTGERPYECKEVCGRVF 170
R K +E G
Sbjct: 58 RSKSHPALLLAPQESSGPSS 77
Score = 34.7 bits (80), Expect = 0.013
Identities = 5/35 (14%), Positives = 10/35 (28%)
Query: 77 VCGRVFNRKDNLREHLRAHAGETKRKKKFKCDKCE 111
CG+ F + D++ H +
Sbjct: 43 FCGKRFEKPDSVAAHRSKSHPALLLAPQESSGPSS 77
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 72
Score = 78.3 bits (194), Expect = 5e-18
Identities = 25/68 (36%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Query: 120 LRIHERLHA-EKLYECDICKNRFPSSGAMKKHRRKHTGERPYECKEVCGRVFNRKDNLRE 178
+H+ EK Y C C F S + +H+R HTGE+PY+C E CG+ F++ L
Sbjct: 2 SSGSSGIHSGEKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLE-CGKAFSQNSGLIN 60
Query: 179 HLRAHAGE 186
H R H
Sbjct: 61 HQRIHTSG 68
Score = 76.0 bits (188), Expect = 3e-17
Identities = 27/67 (40%), Positives = 37/67 (55%), Gaps = 5/67 (7%)
Query: 149 KHRRKHTGERPYECKEVCGRVFNRKDNLREHLRAHAGETKRKKKFKCDKCEKQFYGLTLL 208
H+GE+PY C E CG+ F+R L +H R H GE K +KC +C K F + L
Sbjct: 4 GSSGIHSGEKPYGCVE-CGKAFSRSSILVQHQRVHTGE----KPYKCLECGKAFSQNSGL 58
Query: 209 RIHERLH 215
H+R+H
Sbjct: 59 INHQRIH 65
Score = 73.3 bits (181), Expect = 2e-16
Identities = 28/63 (44%), Positives = 32/63 (50%)
Query: 295 IHEGADPYQCDICRKTFIRKEDLTRHCLLHTGVKPHKCPICTKGFTMKSSLKIHLLTHTK 354
IH G PY C C K F R L +H +HTG KP+KC C K F+ S L H HT
Sbjct: 8 IHSGEKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHTS 67
Query: 355 EPP 357
P
Sbjct: 68 GPS 70
Score = 69.4 bits (171), Expect = 6e-15
Identities = 27/99 (27%), Positives = 34/99 (34%), Gaps = 29/99 (29%)
Query: 232 LNRHMKTHSGVKPHVCEYCEKAFIQASQLKAHMFHHTGENGHTCELCNKTFNRKARLELH 291
+ HSG KP+ C C KAF ++S L H HTGE
Sbjct: 2 SSGSSGIHSGEKPYGCVECGKAFSRSSILVQHQRVHTGEK-------------------- 41
Query: 292 MKYIHEGADPYQCDICRKTFIRKEDLTRHCLLHTGVKPH 330
PY+C C K F + L H +HT
Sbjct: 42 ---------PYKCLECGKAFSQNSGLINHQRIHTSGPSS 71
Score = 69.0 bits (170), Expect = 7e-15
Identities = 24/62 (38%), Positives = 31/62 (50%)
Query: 317 LTRHCLLHTGVKPHKCPICTKGFTMKSSLKIHLLTHTKEPPKSCEVCGRAFIRQDCLIRH 376
+ +H+G KP+ C C K F+ S L H HT E P C CG+AF + LI H
Sbjct: 2 SSGSSGIHSGEKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINH 61
Query: 377 LR 378
R
Sbjct: 62 QR 63
Score = 64.8 bits (159), Expect = 2e-13
Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 5/74 (6%)
Query: 88 LREHLRAHAGETKRKKKFKCDKCEKQFYGLTLLRIHERLH-AEKLYECDICKNRFPSSGA 146
H+GE K + C +C K F ++L H+R+H EK Y+C C F +
Sbjct: 2 SSGSSGIHSGE----KPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSG 57
Query: 147 MKKHRRKHTGERPY 160
+ H+R HT
Sbjct: 58 LINHQRIHTSGPSS 71
Score = 55.6 bits (135), Expect = 4e-10
Identities = 25/95 (26%), Positives = 33/95 (34%), Gaps = 28/95 (29%)
Query: 176 LREHLRAHAGETKRKKKFKCDKCEKQFYGLTLLRIHERLHGLIERTCYARFAAKETLNRH 235
H+GE K + C +C K F + L +H
Sbjct: 2 SSGSSGIHSGE----KPYGCVECGKAF------------------------SRSSILVQH 33
Query: 236 MKTHSGVKPHVCEYCEKAFIQASQLKAHMFHHTGE 270
+ H+G KP+ C C KAF Q S L H HT
Sbjct: 34 QRVHTGEKPYKCLECGKAFSQNSGLINHQRIHTSG 68
Score = 47.5 bits (114), Expect = 3e-07
Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 5/58 (8%)
Query: 76 KVCGRVFNRKDNLREHLRAHAGETKRKKKFKCDKCEKQFYGLTLLRIHERLH-AEKLY 132
CG+ F+R L +H R H GE K +KC +C K F + L H+R+H +
Sbjct: 18 VECGKAFSRSSILVQHQRVHTGE----KPYKCLECGKAFSQNSGLINHQRIHTSGPSS 71
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double
helix, transcription/DNA complex; HET: DNA; 2.80A
{Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Length = 66
Score = 77.6 bits (192), Expect = 6e-18
Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
Query: 292 MKYIHEGADPYQCDICRKTFIRKEDLTRHC--LLHTGVKPHKCPICTKGFTMKSSLKIHL 349
M++ EG Y+C +C + + + RH VK + CP C K FT K ++ H+
Sbjct: 1 MEFTKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHV 60
Query: 350 LTHTK 354
K
Sbjct: 61 KIIHK 65
Score = 73.0 bits (180), Expect = 3e-16
Identities = 15/67 (22%), Positives = 23/67 (34%), Gaps = 6/67 (8%)
Query: 121 RIHERLHAEKLYECDICKNRFPSSGAMKKHRR--KHTGERPYECKEVCGRVFNRKDNLRE 178
E E Y C +C + +H + Y C C + F RKDN+
Sbjct: 3 FTKE---GEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPF-CFKEFTRKDNMTA 58
Query: 179 HLRAHAG 185
H++
Sbjct: 59 HVKIIHK 65
Score = 73.0 bits (180), Expect = 3e-16
Identities = 14/61 (22%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
Query: 324 HTGVKPHKCPICTKGFTMKSSLKIHLLT--HTKEPPKSCEVCGRAFIRQDCLIRHLRQKH 381
G ++C +C++ +T S+ H +T C C + F R+D + H++ H
Sbjct: 5 KEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIH 64
Query: 382 R 382
+
Sbjct: 65 K 65
Score = 71.8 bits (177), Expect = 6e-16
Identities = 17/62 (27%), Positives = 25/62 (40%), Gaps = 2/62 (3%)
Query: 238 THSGVKPHVCEYCEKAFIQASQLKAHM--FHHTGENGHTCELCNKTFNRKARLELHMKYI 295
T G + C+ C + + S H H + C C K F RK + H+K I
Sbjct: 4 TKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKII 63
Query: 296 HE 297
H+
Sbjct: 64 HK 65
Score = 65.7 bits (161), Expect = 9e-14
Identities = 18/93 (19%), Positives = 25/93 (26%), Gaps = 31/93 (33%)
Query: 152 RKHTGERPYECKEVCGRVFNRKDNLREHLR--AHAGETKRKKKFKCDKCEKQFYGLTLLR 209
GE Y CK C RV+ N H K + C C K+F
Sbjct: 3 FTKEGEHTYRCKV-CSRVYTHISNFCRHYVTSHKRNV----KVYPCPFCFKEF------- 50
Query: 210 IHERLHGLIERTCYARFAAKETLNRHMKTHSGV 242
K+ + H+K +
Sbjct: 51 -----------------TRKDNMTAHVKIIHKI 66
Score = 63.3 bits (155), Expect = 6e-13
Identities = 14/62 (22%), Positives = 27/62 (43%), Gaps = 1/62 (1%)
Query: 267 HTGENGHTCELCNKTFNRKARLELHMK-YIHEGADPYQCDICRKTFIRKEDLTRHCLLHT 325
GE+ + C++C++ + + H Y C C K F RK+++T H +
Sbjct: 5 KEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIH 64
Query: 326 GV 327
+
Sbjct: 65 KI 66
Score = 55.6 bits (135), Expect = 3e-10
Identities = 15/91 (16%), Positives = 24/91 (26%), Gaps = 30/91 (32%)
Query: 181 RAHAGETKRKKKFKCDKCEKQFYGLTLLRIHERLHGLIERTCYARFAAKETLNRHMKT-- 238
GE ++C C + + RH T
Sbjct: 3 FTKEGE----HTYRCKVCSRVY------------------------THISNFCRHYVTSH 34
Query: 239 HSGVKPHVCEYCEKAFIQASQLKAHMFHHTG 269
VK + C +C K F + + AH+
Sbjct: 35 KRNVKVYPCPFCFKEFTRKDNMTAHVKIIHK 65
Score = 52.2 bits (126), Expect = 6e-09
Identities = 12/67 (17%), Positives = 20/67 (29%), Gaps = 7/67 (10%)
Query: 93 RAHAGETKRKKKFKCDKCEKQFYGLTLLRIHERLHA---EKLYECDICKNRFPSSGAMKK 149
GE ++C C + + ++ H K+Y C C F M
Sbjct: 3 FTKEGE----HTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTA 58
Query: 150 HRRKHTG 156
H +
Sbjct: 59 HVKIIHK 65
Score = 39.1 bits (92), Expect = 2e-04
Identities = 9/31 (29%), Positives = 11/31 (35%)
Query: 351 THTKEPPKSCEVCGRAFIRQDCLIRHLRQKH 381
T E C+VC R + RH H
Sbjct: 4 TKEGEHTYRCKVCSRVYTHISNFCRHYVTSH 34
Score = 32.5 bits (75), Expect = 0.048
Identities = 16/65 (24%), Positives = 27/65 (41%), Gaps = 9/65 (13%)
Query: 36 GEKTVPGHLCKGCYRIFTSQGYM---LLSYKSKEEEKQICTYIKVCGRVFNRKDNLREHL 92
GE T + CK C R++T ++ + + C C + F RKDN+ H+
Sbjct: 7 GEHT---YRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCP---FCFKEFTRKDNMTAHV 60
Query: 93 RAHAG 97
+
Sbjct: 61 KIIHK 65
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA
binding, transcription, C2H2 type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 70
Score = 77.2 bits (191), Expect = 1e-17
Identities = 16/69 (23%), Positives = 24/69 (34%), Gaps = 2/69 (2%)
Query: 296 HEGADPYQCDICRKTFIRKEDLTRHCLLHTGVKPHKCPICTKGFTMKSSLKIHLLTHTKE 355
P +C C + K L H +H +P KC C+ S+L H+ +
Sbjct: 4 GSSGHPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHGD 63
Query: 356 PPKSCEVCG 364
S G
Sbjct: 64 --MSGPSSG 70
Score = 74.1 bits (183), Expect = 1e-16
Identities = 15/58 (25%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Query: 129 EKLYECDICKNRFPSSGAMKKHRRKHTGERPYECKEVCGRVFNRKDNLREHLRAHAGE 186
+C C S A++ H R H +RP++C C + NL +H++ G+
Sbjct: 7 GHPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNY-CSFDTKQPSNLSKHMKKFHGD 63
Score = 73.3 bits (181), Expect = 2e-16
Identities = 19/93 (20%), Positives = 27/93 (29%), Gaps = 29/93 (31%)
Query: 152 RKHTGERPYECKEVCGRVFNRKDNLREHLRAHAGETKRKKKFKCDKCEKQFYGLTLLRIH 211
+ P +C E C + K LR H R H + + FKC+ C
Sbjct: 2 SSGSSGHPEKCSE-CSYSCSSKAALRIHERIHCTD----RPFKCNYCSF----------- 45
Query: 212 ERLHGLIERTCYARFAAKETLNRHMKTHSGVKP 244
L++HMK G
Sbjct: 46 -------------DTKQPSNLSKHMKKFHGDMS 65
Score = 67.9 bits (167), Expect = 2e-14
Identities = 14/67 (20%), Positives = 28/67 (41%), Gaps = 1/67 (1%)
Query: 267 HTGENGHTCELCNKTFNRKARLELHMKYIHEGADPYQCDICRKTFIRKEDLTRHCLLHTG 326
+ + C C+ + + KA L +H + IH P++C+ C + +L++H G
Sbjct: 4 GSSGHPEKCSECSYSCSSKAALRIHER-IHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHG 62
Query: 327 VKPHKCP 333
Sbjct: 63 DMSGPSS 69
Score = 66.8 bits (164), Expect = 4e-14
Identities = 15/58 (25%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Query: 324 HTGVKPHKCPICTKGFTMKSSLKIHLLTHTKEPPKSCEVCGRAFIRQDCLIRHLRQKH 381
+ P KC C+ + K++L+IH H + P C C + L +H++ K
Sbjct: 4 GSSGHPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMK-KF 60
Score = 66.0 bits (162), Expect = 7e-14
Identities = 14/61 (22%), Positives = 22/61 (36%), Gaps = 1/61 (1%)
Query: 238 THSGVKPHVCEYCEKAFIQASQLKAHMFHHTGENGHTCELCNKTFNRKARLELHMKYIHE 297
+ S P C C + + L+ H H + C C+ + + L HMK
Sbjct: 3 SGSSGHPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMK-KFH 61
Query: 298 G 298
G
Sbjct: 62 G 62
Score = 64.8 bits (159), Expect = 2e-13
Identities = 16/71 (22%), Positives = 28/71 (39%), Gaps = 5/71 (7%)
Query: 93 RAHAGETKRKKKFKCDKCEKQFYGLTLLRIHERLH-AEKLYECDICKNRFPSSGAMKKHR 151
+ + KC +C LRIHER+H ++ ++C+ C + KH
Sbjct: 2 SSGSSG----HPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHM 57
Query: 152 RKHTGERPYEC 162
+K G+
Sbjct: 58 KKFHGDMSGPS 68
Score = 32.1 bits (74), Expect = 0.077
Identities = 6/28 (21%), Positives = 11/28 (39%)
Query: 351 THTKEPPKSCEVCGRAFIRQDCLIRHLR 378
+ + P+ C C + + L H R
Sbjct: 3 SGSSGHPEKCSECSYSCSSKAALRIHER 30
Score = 31.7 bits (73), Expect = 0.12
Identities = 5/21 (23%), Positives = 10/21 (47%)
Query: 78 CGRVFNRKDNLREHLRAHAGE 98
C + NL +H++ G+
Sbjct: 43 CSFDTKQPSNLSKHMKKFHGD 63
>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 115
Score = 75.6 bits (185), Expect = 1e-16
Identities = 22/108 (20%), Positives = 38/108 (35%), Gaps = 6/108 (5%)
Query: 256 QASQLKAHMFHHTGENGHTCELCNKTFNRKARLELHMK----YIHEGADPYQCDICRKTF 311
S K + TG + C+ C+ ++ L +HM Y + + + R +
Sbjct: 3 SGSSGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSK 62
Query: 312 IRKEDLTRHCLLHTGVKPHKCPICTKGFTMKSSLKIHLL--THTKEPP 357
RK L K KC C F L +H++ H ++
Sbjct: 63 PRKRSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVHMIKTKHYQKVS 110
Score = 64.8 bits (157), Expect = 7e-13
Identities = 20/109 (18%), Positives = 32/109 (29%), Gaps = 8/109 (7%)
Query: 288 LELHMKYIHEGADPYQCDICRKTFIRKEDLTRHC-----LLHTGVKPHKCPICTKGFTMK 342
+L+ I GA ++C C + +LT H + K
Sbjct: 7 GKLYGS-IFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRK 65
Query: 343 SSLKIHLLTHTKEPPKSCEVCGRAFIRQDCLIRHLRQKHRSHLDEVLAQ 391
SL + C CG +F L H+ + H +V
Sbjct: 66 RSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVHMIKTK--HYQKVSGP 112
Score = 64.0 bits (155), Expect = 1e-12
Identities = 21/122 (17%), Positives = 33/122 (27%), Gaps = 24/122 (19%)
Query: 143 SSGAMKKHRRKHTGERPYECKEVCGRVFNRKDNLREHLRAHAGETKRKKKFKCDKCEKQF 202
S + K + TG + CK+ C ++ L H+ R + D +
Sbjct: 3 SGSSGKLYGSIFTGASKFRCKD-CSAAYDTLVELTVHMNETG--HYRDDNHETDNNNPKR 59
Query: 203 YGLTLLRIHERLHGLIERTCYARFAAKETLNRHMKTHSGVKPHVCEYCEKAFIQASQLKA 262
+ K +L K C YC +F L
Sbjct: 60 WS---------------------KPRKRSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSV 98
Query: 263 HM 264
HM
Sbjct: 99 HM 100
Score = 60.2 bits (145), Expect = 4e-11
Identities = 17/104 (16%), Positives = 32/104 (30%), Gaps = 11/104 (10%)
Query: 87 NLREHLRAHAGETKRKKKFKCDKCEKQFYGLTLLRIHERLHAEKLYECDICKNRFPSSG- 145
+ + + G KF+C C + L L +H + N P
Sbjct: 6 SGKLYGSIFTGA----SKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWS 61
Query: 146 -----AMKKHRRKHTGERPYECKEVCGRVFNRKDNLREHLRAHA 184
++ + K ++ +C CG F +L H+
Sbjct: 62 KPRKRSLLEMEGKEDAQKVLKCM-YCGHSFESLQDLSVHMIKTK 104
Score = 52.5 bits (125), Expect = 1e-08
Identities = 19/130 (14%), Positives = 31/130 (23%), Gaps = 24/130 (18%)
Query: 175 NLREHLRAHAGETKRKKKFKCDKCEKQFYGLTLLRIHERLHGLIERTCYARFAAKETLNR 234
+ + + G KF+C C + L L +H G
Sbjct: 6 SGKLYGSIFTGA----SKFRCKDCSAAYDTLVELTVHMNETG------------------ 43
Query: 235 HMKTHSGVKPHVCEYCEKAFIQASQLKAHMFHHTGENGHTCELCNKTFNRKARLELHM-K 293
H + + + L + C C +F L +HM K
Sbjct: 44 H-YRDDNHETDNNNPKRWSKPRKRSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVHMIK 102
Query: 294 YIHEGADPYQ 303
H
Sbjct: 103 TKHYQKVSGP 112
Score = 50.9 bits (121), Expect = 5e-08
Identities = 17/95 (17%), Positives = 30/95 (31%), Gaps = 5/95 (5%)
Query: 120 LRIHERLH-AEKLYECDICKNRFPSSGAMKKHRRKHTGERPYEC--KEVCGRVFNRKDNL 176
+++ + + C C + + + H TG + + K
Sbjct: 7 GKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMN-ETGHYRDDNHETDNNNPKRWSKPRK 65
Query: 177 REHLRAHAGETKRKKKFKCDKCEKQFYGLTLLRIH 211
R L G+ +K KC C F L L +H
Sbjct: 66 R-SLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVH 99
Score = 47.5 bits (112), Expect = 9e-07
Identities = 17/92 (18%), Positives = 33/92 (35%), Gaps = 8/92 (8%)
Query: 76 KVCGRVFNRKDNLREHLRAHAGETKRKKKFKCDKCEKQFYGL----TLLRIHERLHAEKL 131
K C ++ L H+ R + D + + +LL + + A+K+
Sbjct: 23 KDCSAAYDTLVELTVHMNETG--HYRDDNHETDNNNPKRWSKPRKRSLLEMEGKEDAQKV 80
Query: 132 YECDICKNRFPSSGAMKKH--RRKHTGERPYE 161
+C C + F S + H + KH +
Sbjct: 81 LKCMYCGHSFESLQDLSVHMIKTKHYQKVSGP 112
Score = 37.8 bits (87), Expect = 0.002
Identities = 19/95 (20%), Positives = 33/95 (34%), Gaps = 9/95 (9%)
Query: 343 SSLKIHLLTHTKEPPKSCEVCGRAFIRQDCLIRHLRQKHRSHLDEVLAQGDKKKLEAQLL 402
SS K++ T C+ C A+ L H+ + H + + D +
Sbjct: 5 SSGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETG--HYRDDNHETDNNNPKRWSK 62
Query: 403 AAAATELTSVLEDGEEEGDEGEENLLRCSKCKVTF 437
+ L EG E + +L+C C +F
Sbjct: 63 PRKRSLLEM-------EGKEDAQKVLKCMYCGHSF 90
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces
cerevisiae} SCOP: g.37.1.1 g.37.1.1
Length = 60
Score = 71.4 bits (176), Expect = 9e-16
Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Query: 130 KLYECDICKNRFPSSGAMKKHRRKHTGERPYECKEVCGRVFNRKDNLREHL-RAHAGET 187
+ + C++C F +K+H R HT E+PY C C R F R+D L H + H+G
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGL-CNRAFTRRDLLIRHAQKIHSGNL 58
Score = 68.7 bits (169), Expect = 6e-15
Identities = 23/54 (42%), Positives = 32/54 (59%)
Query: 328 KPHKCPICTKGFTMKSSLKIHLLTHTKEPPKSCEVCGRAFIRQDCLIRHLRQKH 381
+ C +CT+ F + LK H +HT E P C +C RAF R+D LIRH ++ H
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIH 54
Score = 67.5 bits (166), Expect = 2e-14
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 301 PYQCDICRKTFIRKEDLTRHCLLHTGVKPHKCPICTKGFTMKSSLKIHLL-THTKE 355
+ C++C + F R+E L RH HT KP+ C +C + FT + L H H+
Sbjct: 2 SFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSGN 57
Score = 62.1 bits (152), Expect = 1e-12
Identities = 23/56 (41%), Positives = 30/56 (53%)
Query: 243 KPHVCEYCEKAFIQASQLKAHMFHHTGENGHTCELCNKTFNRKARLELHMKYIHEG 298
+ VCE C +AF + LK H HT E + C LCN+ F R+ L H + IH G
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56
Score = 51.7 bits (125), Expect = 7e-09
Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 226 FAAKETLNRHMKTHSGVKPHVCEYCEKAFIQASQLKAHMF-HHTGENG 272
FA +E L RH ++H+ KP+ C C +AF + L H H+G G
Sbjct: 12 FARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSGNLG 59
Score = 46.7 bits (112), Expect = 3e-07
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 5/53 (9%)
Query: 76 KVCGRVFNRKDNLREHLRAHAGETKRKKKFKCDKCEKQFYGLTLLRIHE-RLH 127
+VC R F R+++L+ H R+H E K + C C + F LL H ++H
Sbjct: 6 EVCTRAFARQEHLKRHYRSHTNE----KPYPCGLCNRAFTRRDLLIRHAQKIH 54
Score = 46.7 bits (112), Expect = 4e-07
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Query: 103 KKFKCDKCEKQFYGLTLLRIHERLHA-EKLYECDICKNRFPSSGAMKKHRRK-HTGE 157
+ F C+ C + F L+ H R H EK Y C +C F + +H +K H+G
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSGN 57
>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc
finger, dimer, protein-DNA complex, cooperativity,
transcription/DNA complex; 2.35A {Mus musculus} SCOP:
g.37.1.1 g.37.1.1
Length = 73
Score = 70.0 bits (172), Expect = 4e-15
Identities = 23/66 (34%), Positives = 36/66 (54%), Gaps = 4/66 (6%)
Query: 120 LRIHERLHAEKLYECDI--CKNRFPSSGAMKKHRRKHTGERPYECKEVCGRVFNRKDNLR 177
L + + Y C + C RF S + +H R HTG++P++C +C R F+R D+L
Sbjct: 9 LLNYVVPK-MRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQC-RICMRNFSRSDHLT 66
Query: 178 EHLRAH 183
H+R H
Sbjct: 67 THIRTH 72
Score = 66.6 bits (163), Expect = 6e-14
Identities = 24/77 (31%), Positives = 31/77 (40%), Gaps = 7/77 (9%)
Query: 140 RFPSSGAMKKHRRKHTGERPYECK-EVCGRVFNRKDNLREHLRAHAGETKRKKKFKCDKC 198
+ + RPY C E C R F+R D L H+R H G+ K F+C C
Sbjct: 2 EPHPMNNLLNYVV--PKMRPYACPVESCDRRFSRSDELTRHIRIHTGQ----KPFQCRIC 55
Query: 199 EKQFYGLTLLRIHERLH 215
+ F L H R H
Sbjct: 56 MRNFSRSDHLTTHIRTH 72
Score = 65.8 bits (161), Expect = 1e-13
Identities = 26/77 (33%), Positives = 38/77 (49%), Gaps = 9/77 (11%)
Query: 279 NKTFNRKARLELHMKYIHEGADPYQCDI--CRKTFIRKEDLTRHCLLHTGVKPHKCPICT 336
+ N + M+ PY C + C + F R ++LTRH +HTG KP +C IC
Sbjct: 4 HPMNNLLNYVVPKMR-------PYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICM 56
Query: 337 KGFTMKSSLKIHLLTHT 353
+ F+ L H+ THT
Sbjct: 57 RNFSRSDHLTTHIRTHT 73
Score = 58.5 bits (142), Expect = 3e-11
Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 4/68 (5%)
Query: 313 RKEDLTRHCLLHTGVKPHKCPI--CTKGFTMKSSLKIHLLTHTKEPPKSCEVCGRAFIRQ 370
+L + + ++P+ CP+ C + F+ L H+ HT + P C +C R F R
Sbjct: 5 PMNNLLNY--VVPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRS 62
Query: 371 DCLIRHLR 378
D L H+R
Sbjct: 63 DHLTTHIR 70
Score = 58.5 bits (142), Expect = 4e-11
Identities = 17/64 (26%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
Query: 232 LNRHMKTHSGVKPHVC--EYCEKAFIQASQLKAHMFHHTGENGHTCELCNKTFNRKARLE 289
L ++ +P+ C E C++ F ++ +L H+ HTG+ C +C + F+R L
Sbjct: 9 LLNYVVPKM--RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLT 66
Query: 290 LHMK 293
H++
Sbjct: 67 THIR 70
Score = 57.7 bits (140), Expect = 8e-11
Identities = 18/61 (29%), Positives = 30/61 (49%)
Query: 208 LRIHERLHGLIERTCYARFAAKETLNRHMKTHSGVKPHVCEYCEKAFIQASQLKAHMFHH 267
+ R + +C RF+ + L RH++ H+G KP C C + F ++ L H+ H
Sbjct: 13 VVPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 72
Query: 268 T 268
T
Sbjct: 73 T 73
Score = 53.5 bits (129), Expect = 2e-09
Identities = 19/77 (24%), Positives = 33/77 (42%), Gaps = 9/77 (11%)
Query: 82 FNRKDNLREHLRAHAGETKRKKKFKCD--KCEKQFYGLTLLRIHERLH-AEKLYECDICK 138
+ +NL ++ + + C C+++F L H R+H +K ++C IC
Sbjct: 3 PHPMNNLLNYVVPK------MRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICM 56
Query: 139 NRFPSSGAMKKHRRKHT 155
F S + H R HT
Sbjct: 57 RNFSRSDHLTTHIRTHT 73
Score = 50.0 bits (120), Expect = 3e-08
Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 4/50 (8%)
Query: 78 CGRVFNRKDNLREHLRAHAGETKRKKKFKCDKCEKQFYGLTLLRIHERLH 127
C R F+R D L H+R H G+ K F+C C + F L H R H
Sbjct: 27 CDRRFSRSDELTRHIRIHTGQ----KPFQCRICMRNFSRSDHLTTHIRTH 72
>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 95
Score = 66.1 bits (161), Expect = 1e-13
Identities = 22/81 (27%), Positives = 27/81 (33%), Gaps = 9/81 (11%)
Query: 289 ELHMKYIHEGADPYQCDICRKTFIRKEDLTRH-CLLHTGVKPHK--------CPICTKGF 339
EL K+I E C +TF +L H + H G CP K F
Sbjct: 13 ELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSF 72
Query: 340 TMKSSLKIHLLTHTKEPPKSC 360
K L H+ HT E
Sbjct: 73 KAKYKLVNHIRVHTGEKSGPS 93
Score = 63.1 bits (153), Expect = 2e-12
Identities = 17/74 (22%), Positives = 26/74 (35%), Gaps = 8/74 (10%)
Query: 267 HTGENGHTCELCNKTFNRKARLELHMKYIHEGADPYQCDICR--------KTFIRKEDLT 318
+ + C++TF+ L H+ H G +C K+F K L
Sbjct: 20 DEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLV 79
Query: 319 RHCLLHTGVKPHKC 332
H +HTG K
Sbjct: 80 NHIRVHTGEKSGPS 93
Score = 52.7 bits (126), Expect = 7e-09
Identities = 19/95 (20%), Positives = 27/95 (28%), Gaps = 22/95 (23%)
Query: 154 HTGERPYECKEVCGRVFNRKDNLREHL-RAHAGETKRKKKFKCDKCEKQFYGLTLLRIHE 212
+ K C R F+ L H+ H G + C E G +
Sbjct: 20 DEAQLSRPKKS-CDRTFSTMHELVTHVTMEHVGG-PEQNNHVCYWEECPREGKS------ 71
Query: 213 RLHGLIERTCYARFAAKETLNRHMKTHSGVKPHVC 247
F AK L H++ H+G K
Sbjct: 72 -------------FKAKYKLVNHIRVHTGEKSGPS 93
Score = 49.6 bits (118), Expect = 9e-08
Identities = 18/88 (20%), Positives = 24/88 (27%), Gaps = 24/88 (27%)
Query: 76 KVCGRVFNRKDNLREHL-RAHAGETKRKKKFKCDKCEKQFYGLTLLRIHERLHAEKLYEC 134
K C R F+ L H+ H G + C EC
Sbjct: 29 KSCDRTFSTMHELVTHVTMEHVGG-PEQNNHVCYW----------------------EEC 65
Query: 135 DICKNRFPSSGAMKKHRRKHTGERPYEC 162
F + + H R HTGE+
Sbjct: 66 PREGKSFKAKYKLVNHIRVHTGEKSGPS 93
Score = 48.8 bits (116), Expect = 2e-07
Identities = 16/75 (21%), Positives = 23/75 (30%), Gaps = 12/75 (16%)
Query: 129 EKLYECDICKNRFPSSGAMKKH-RRKHTGERP---YECK----EVCGRVFNRKDNLREHL 180
+ C F + + H +H G + C G+ F K L H+
Sbjct: 23 QLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHI 82
Query: 181 RAHAGETKRKKKFKC 195
R H GE K
Sbjct: 83 RVHTGE----KSGPS 93
Score = 47.7 bits (113), Expect = 5e-07
Identities = 12/65 (18%), Positives = 23/65 (35%), Gaps = 9/65 (13%)
Query: 323 LHTGVKPHKCPICTKGFTMKSSLKIHLL-THTKEPPKS--------CEVCGRAFIRQDCL 373
+ C + F+ L H+ H P ++ C G++F + L
Sbjct: 19 IDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKL 78
Query: 374 IRHLR 378
+ H+R
Sbjct: 79 VNHIR 83
Score = 47.3 bits (112), Expect = 7e-07
Identities = 17/75 (22%), Positives = 25/75 (33%), Gaps = 9/75 (12%)
Query: 210 IHERLHGLIERTCYARFAAKETLNRHM-KTHSGVKPHVCEYCE--------KAFIQASQL 260
I E +++C F+ L H+ H G C K+F +L
Sbjct: 19 IDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKL 78
Query: 261 KAHMFHHTGENGHTC 275
H+ HTGE
Sbjct: 79 VNHIRVHTGEKSGPS 93
Score = 34.9 bits (80), Expect = 0.015
Identities = 6/31 (19%), Positives = 12/31 (38%)
Query: 351 THTKEPPKSCEVCGRAFIRQDCLIRHLRQKH 381
+ + + C R F L+ H+ +H
Sbjct: 19 IDEAQLSRPKKSCDRTFSTMHELVTHVTMEH 49
>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 62.9 bits (154), Expect = 4e-13
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 5/49 (10%)
Query: 149 KHRRKHTGERPYECKEVCGRVFNRKDNLREHLRAHAGETKRKKKFKCDK 197
TGE+PY+C++ CG+ +N K NL H + H GE +
Sbjct: 2 SSGSSGTGEKPYKCEK-CGKGYNSKFNLDMHQKVHTGE----RPSGPSS 45
Score = 51.0 bits (123), Expect = 8e-09
Identities = 13/42 (30%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 122 IHERLHA-EKLYECDICKNRFPSSGAMKKHRRKHTGERPYEC 162
EK Y+C+ C + S + H++ HTGERP
Sbjct: 2 SSGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKVHTGERPSGP 43
Score = 49.4 bits (119), Expect = 3e-08
Identities = 16/41 (39%), Positives = 20/41 (48%)
Query: 320 HCLLHTGVKPHKCPICTKGFTMKSSLKIHLLTHTKEPPKSC 360
TG KP+KC C KG+ K +L +H HT E P
Sbjct: 3 SGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKVHTGERPSGP 43
Score = 47.9 bits (115), Expect = 1e-07
Identities = 13/38 (34%), Positives = 19/38 (50%)
Query: 295 IHEGADPYQCDICRKTFIRKEDLTRHCLLHTGVKPHKC 332
G PY+C+ C K + K +L H +HTG +P
Sbjct: 6 SGTGEKPYKCEKCGKGYNSKFNLDMHQKVHTGERPSGP 43
Score = 46.8 bits (112), Expect = 3e-07
Identities = 13/41 (31%), Positives = 17/41 (41%)
Query: 235 HMKTHSGVKPHVCEYCEKAFIQASQLKAHMFHHTGENGHTC 275
+ +G KP+ CE C K + L H HTGE
Sbjct: 3 SGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKVHTGERPSGP 43
Score = 41.4 bits (98), Expect = 2e-05
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Query: 267 HTGENGHTCELCNKTFNRKARLELHMKYIHEGADPYQC 304
TGE + CE C K +N K L++H K +H G P
Sbjct: 7 GTGEKPYKCEKCGKGYNSKFNLDMHQK-VHTGERPSGP 43
Score = 34.4 bits (80), Expect = 0.007
Identities = 9/32 (28%), Positives = 14/32 (43%)
Query: 347 IHLLTHTKEPPKSCEVCGRAFIRQDCLIRHLR 378
+ T E P CE CG+ + + L H +
Sbjct: 2 SSGSSGTGEKPYKCEKCGKGYNSKFNLDMHQK 33
Score = 34.0 bits (79), Expect = 0.008
Identities = 10/32 (31%), Positives = 14/32 (43%), Gaps = 4/32 (12%)
Query: 78 CGRVFNRKDNLREHLRAHAGETKRKKKFKCDK 109
CG+ +N K NL H + H GE +
Sbjct: 18 CGKGYNSKFNLDMHQKVHTGE----RPSGPSS 45
>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 62.5 bits (153), Expect = 6e-13
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 5/49 (10%)
Query: 149 KHRRKHTGERPYECKEVCGRVFNRKDNLREHLRAHAGETKRKKKFKCDK 197
+GE+PY+C E CG+ + R+ +L H R H GE K
Sbjct: 2 SSGSSGSGEKPYKCVE-CGKGYKRRLDLDFHQRVHTGE----KLSGPSS 45
Score = 51.0 bits (123), Expect = 8e-09
Identities = 14/38 (36%), Positives = 18/38 (47%)
Query: 295 IHEGADPYQCDICRKTFIRKEDLTRHCLLHTGVKPHKC 332
G PY+C C K + R+ DL H +HTG K
Sbjct: 6 SGSGEKPYKCVECGKGYKRRLDLDFHQRVHTGEKLSGP 43
Score = 49.1 bits (118), Expect = 4e-08
Identities = 13/41 (31%), Positives = 17/41 (41%)
Query: 235 HMKTHSGVKPHVCEYCEKAFIQASQLKAHMFHHTGENGHTC 275
+ SG KP+ C C K + + L H HTGE
Sbjct: 3 SGSSGSGEKPYKCVECGKGYKRRLDLDFHQRVHTGEKLSGP 43
Score = 47.9 bits (115), Expect = 1e-07
Identities = 11/41 (26%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Query: 123 HERLHA-EKLYECDICKNRFPSSGAMKKHRRKHTGERPYEC 162
+ EK Y+C C + + H+R HTGE+
Sbjct: 3 SGSSGSGEKPYKCVECGKGYKRRLDLDFHQRVHTGEKLSGP 43
Score = 47.9 bits (115), Expect = 1e-07
Identities = 13/41 (31%), Positives = 17/41 (41%)
Query: 320 HCLLHTGVKPHKCPICTKGFTMKSSLKIHLLTHTKEPPKSC 360
+G KP+KC C KG+ + L H HT E
Sbjct: 3 SGSSGSGEKPYKCVECGKGYKRRLDLDFHQRVHTGEKLSGP 43
Score = 41.0 bits (97), Expect = 3e-05
Identities = 10/44 (22%), Positives = 18/44 (40%), Gaps = 1/44 (2%)
Query: 262 AHMFHHTGENGHTCELCNKTFNRKARLELHMKYIHEGADPYQCD 305
+ +GE + C C K + R+ L+ H + +H G
Sbjct: 2 SSGSSGSGEKPYKCVECGKGYKRRLDLDFHQR-VHTGEKLSGPS 44
Score = 39.8 bits (94), Expect = 8e-05
Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 5/46 (10%)
Query: 91 HLRAHAGETKRKKKFKCDKCEKQFYGLTLLRIHERLH-AEKLYECD 135
+ +GE K +KC +C K + L H+R+H EKL
Sbjct: 3 SGSSGSGE----KPYKCVECGKGYKRRLDLDFHQRVHTGEKLSGPS 44
Score = 36.0 bits (84), Expect = 0.002
Identities = 9/31 (29%), Positives = 14/31 (45%)
Query: 348 HLLTHTKEPPKSCEVCGRAFIRQDCLIRHLR 378
+ + E P C CG+ + R+ L H R
Sbjct: 3 SGSSGSGEKPYKCVECGKGYKRRLDLDFHQR 33
Score = 34.0 bits (79), Expect = 0.009
Identities = 10/32 (31%), Positives = 14/32 (43%), Gaps = 4/32 (12%)
Query: 78 CGRVFNRKDNLREHLRAHAGETKRKKKFKCDK 109
CG+ + R+ +L H R H GE K
Sbjct: 18 CGKGYKRRLDLDFHQRVHTGE----KLSGPSS 45
>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 62.5 bits (153), Expect = 7e-13
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 5/49 (10%)
Query: 149 KHRRKHTGERPYECKEVCGRVFNRKDNLREHLRAHAGETKRKKKFKCDK 197
+GE+PY+C E CG+ F+R +L EH R H G +
Sbjct: 2 SSGSSGSGEKPYKCSE-CGKAFHRHTHLNEHRRIHTGY----RPSGPSS 45
Score = 50.2 bits (121), Expect = 2e-08
Identities = 14/38 (36%), Positives = 17/38 (44%)
Query: 295 IHEGADPYQCDICRKTFIRKEDLTRHCLLHTGVKPHKC 332
G PY+C C K F R L H +HTG +P
Sbjct: 6 SGSGEKPYKCSECGKAFHRHTHLNEHRRIHTGYRPSGP 43
Score = 49.4 bits (119), Expect = 3e-08
Identities = 14/43 (32%), Positives = 18/43 (41%)
Query: 234 RHMKTHSGVKPHVCEYCEKAFIQASQLKAHMFHHTGENGHTCE 276
+ SG KP+ C C KAF + + L H HTG
Sbjct: 2 SSGSSGSGEKPYKCSECGKAFHRHTHLNEHRRIHTGYRPSGPS 44
Score = 48.3 bits (116), Expect = 9e-08
Identities = 14/41 (34%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Query: 123 HERLH-AEKLYECDICKNRFPSSGAMKKHRRKHTGERPYEC 162
EK Y+C C F + +HRR HTG RP
Sbjct: 3 SGSSGSGEKPYKCSECGKAFHRHTHLNEHRRIHTGYRPSGP 43
Score = 45.2 bits (108), Expect = 1e-06
Identities = 13/43 (30%), Positives = 16/43 (37%)
Query: 319 RHCLLHTGVKPHKCPICTKGFTMKSSLKIHLLTHTKEPPKSCE 361
+G KP+KC C K F + L H HT P
Sbjct: 2 SSGSSGSGEKPYKCSECGKAFHRHTHLNEHRRIHTGYRPSGPS 44
Score = 41.7 bits (99), Expect = 2e-05
Identities = 13/42 (30%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Query: 263 HMFHHTGENGHTCELCNKTFNRKARLELHMKYIHEGADPYQC 304
+GE + C C K F+R L H + IH G P
Sbjct: 3 SGSSGSGEKPYKCSECGKAFHRHTHLNEHRR-IHTGYRPSGP 43
Score = 35.2 bits (82), Expect = 0.004
Identities = 11/31 (35%), Positives = 14/31 (45%)
Query: 348 HLLTHTKEPPKSCEVCGRAFIRQDCLIRHLR 378
+ + E P C CG+AF R L H R
Sbjct: 3 SGSSGSGEKPYKCSECGKAFHRHTHLNEHRR 33
Score = 33.6 bits (78), Expect = 0.011
Identities = 10/32 (31%), Positives = 14/32 (43%), Gaps = 4/32 (12%)
Query: 78 CGRVFNRKDNLREHLRAHAGETKRKKKFKCDK 109
CG+ F+R +L EH R H G +
Sbjct: 18 CGKAFHRHTHLNEHRRIHTGY----RPSGPSS 45
>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 62.1 bits (152), Expect = 9e-13
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 5/48 (10%)
Query: 150 HRRKHTGERPYECKEVCGRVFNRKDNLREHLRAHAGETKRKKKFKCDK 197
+ E+PY+C++ CG+ +NR+ NL H R H GE K
Sbjct: 3 SGSSGSVEKPYKCED-CGKGYNRRLNLDMHQRVHMGE----KTSGPSS 45
Score = 49.0 bits (118), Expect = 4e-08
Identities = 11/41 (26%), Positives = 17/41 (41%)
Query: 320 HCLLHTGVKPHKCPICTKGFTMKSSLKIHLLTHTKEPPKSC 360
+ KP+KC C KG+ + +L +H H E
Sbjct: 3 SGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRVHMGEKTSGP 43
Score = 48.6 bits (117), Expect = 5e-08
Identities = 11/38 (28%), Positives = 17/38 (44%)
Query: 295 IHEGADPYQCDICRKTFIRKEDLTRHCLLHTGVKPHKC 332
PY+C+ C K + R+ +L H +H G K
Sbjct: 6 SGSVEKPYKCEDCGKGYNRRLNLDMHQRVHMGEKTSGP 43
Score = 47.9 bits (115), Expect = 1e-07
Identities = 10/41 (24%), Positives = 16/41 (39%), Gaps = 1/41 (2%)
Query: 123 HERLH-AEKLYECDICKNRFPSSGAMKKHRRKHTGERPYEC 162
EK Y+C+ C + + H+R H GE+
Sbjct: 3 SGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRVHMGEKTSGP 43
Score = 47.9 bits (115), Expect = 1e-07
Identities = 12/41 (29%), Positives = 16/41 (39%)
Query: 235 HMKTHSGVKPHVCEYCEKAFIQASQLKAHMFHHTGENGHTC 275
+ S KP+ CE C K + + L H H GE
Sbjct: 3 SGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRVHMGEKTSGP 43
Score = 42.5 bits (101), Expect = 7e-06
Identities = 11/43 (25%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 262 AHMFHHTGENGHTCELCNKTFNRKARLELHMKYIHEGADPYQC 304
+ + E + CE C K +NR+ L++H + +H G
Sbjct: 2 SSGSSGSVEKPYKCEDCGKGYNRRLNLDMHQR-VHMGEKTSGP 43
Score = 38.6 bits (91), Expect = 2e-04
Identities = 12/45 (26%), Positives = 20/45 (44%), Gaps = 5/45 (11%)
Query: 91 HLRAHAGETKRKKKFKCDKCEKQFYGLTLLRIHERLHA-EKLYEC 134
+ + E K +KC+ C K + L +H+R+H EK
Sbjct: 3 SGSSGSVE----KPYKCEDCGKGYNRRLNLDMHQRVHMGEKTSGP 43
Score = 35.9 bits (84), Expect = 0.002
Identities = 10/31 (32%), Positives = 15/31 (48%)
Query: 348 HLLTHTKEPPKSCEVCGRAFIRQDCLIRHLR 378
+ + E P CE CG+ + R+ L H R
Sbjct: 3 SGSSGSVEKPYKCEDCGKGYNRRLNLDMHQR 33
Score = 35.2 bits (82), Expect = 0.004
Identities = 12/32 (37%), Positives = 15/32 (46%), Gaps = 4/32 (12%)
Query: 78 CGRVFNRKDNLREHLRAHAGETKRKKKFKCDK 109
CG+ +NR+ NL H R H GE K
Sbjct: 18 CGKGYNRRLNLDMHQRVHMGE----KTSGPSS 45
Score = 33.2 bits (77), Expect = 0.015
Identities = 10/37 (27%), Positives = 18/37 (48%), Gaps = 4/37 (10%)
Query: 179 HLRAHAGETKRKKKFKCDKCEKQFYGLTLLRIHERLH 215
+ + E K +KC+ C K + L +H+R+H
Sbjct: 3 SGSSGSVE----KPYKCEDCGKGYNRRLNLDMHQRVH 35
>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 62.2 bits (152), Expect = 1e-12
Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 5/49 (10%)
Query: 149 KHRRKHTGERPYECKEVCGRVFNRKDNLREHLRAHAGETKRKKKFKCDK 197
TGE+P++C E CG+ +N++ +L +H R H GE K
Sbjct: 2 SSGSSGTGEKPFKCGE-CGKSYNQRVHLTQHQRVHTGE----KPSGPSS 45
Score = 49.4 bits (119), Expect = 3e-08
Identities = 13/38 (34%), Positives = 21/38 (55%)
Query: 295 IHEGADPYQCDICRKTFIRKEDLTRHCLLHTGVKPHKC 332
G P++C C K++ ++ LT+H +HTG KP
Sbjct: 6 SGTGEKPFKCGECGKSYNQRVHLTQHQRVHTGEKPSGP 43
Score = 47.9 bits (115), Expect = 1e-07
Identities = 13/42 (30%), Positives = 17/42 (40%)
Query: 234 RHMKTHSGVKPHVCEYCEKAFIQASQLKAHMFHHTGENGHTC 275
+ +G KP C C K++ Q L H HTGE
Sbjct: 2 SSGSSGTGEKPFKCGECGKSYNQRVHLTQHQRVHTGEKPSGP 43
Score = 47.5 bits (114), Expect = 2e-07
Identities = 11/41 (26%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Query: 123 HERLH-AEKLYECDICKNRFPSSGAMKKHRRKHTGERPYEC 162
EK ++C C + + +H+R HTGE+P
Sbjct: 3 SGSSGTGEKPFKCGECGKSYNQRVHLTQHQRVHTGEKPSGP 43
Score = 46.4 bits (111), Expect = 4e-07
Identities = 14/42 (33%), Positives = 16/42 (38%)
Query: 319 RHCLLHTGVKPHKCPICTKGFTMKSSLKIHLLTHTKEPPKSC 360
TG KP KC C K + + L H HT E P
Sbjct: 2 SSGSSGTGEKPFKCGECGKSYNQRVHLTQHQRVHTGEKPSGP 43
Score = 41.4 bits (98), Expect = 2e-05
Identities = 12/42 (28%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 263 HMFHHTGENGHTCELCNKTFNRKARLELHMKYIHEGADPYQC 304
TGE C C K++N++ L H + +H G P
Sbjct: 3 SGSSGTGEKPFKCGECGKSYNQRVHLTQHQR-VHTGEKPSGP 43
Score = 38.7 bits (91), Expect = 2e-04
Identities = 14/45 (31%), Positives = 19/45 (42%), Gaps = 5/45 (11%)
Query: 91 HLRAHAGETKRKKKFKCDKCEKQFYGLTLLRIHERLH-AEKLYEC 134
+ GE K FKC +C K + L H+R+H EK
Sbjct: 3 SGSSGTGE----KPFKCGECGKSYNQRVHLTQHQRVHTGEKPSGP 43
Score = 34.0 bits (79), Expect = 0.009
Identities = 9/31 (29%), Positives = 16/31 (51%)
Query: 348 HLLTHTKEPPKSCEVCGRAFIRQDCLIRHLR 378
+ T E P C CG+++ ++ L +H R
Sbjct: 3 SGSSGTGEKPFKCGECGKSYNQRVHLTQHQR 33
Score = 32.9 bits (76), Expect = 0.019
Identities = 10/32 (31%), Positives = 16/32 (50%), Gaps = 4/32 (12%)
Query: 78 CGRVFNRKDNLREHLRAHAGETKRKKKFKCDK 109
CG+ +N++ +L +H R H GE K
Sbjct: 18 CGKSYNQRVHLTQHQRVHTGE----KPSGPSS 45
>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A
Length = 46
Score = 62.2 bits (152), Expect = 1e-12
Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 5/49 (10%)
Query: 149 KHRRKHTGERPYECKEVCGRVFNRKDNLREHLRAHAGETKRKKKFKCDK 197
TGE+ Y+C E CG+VF+R L +H + H GE K
Sbjct: 2 SSGSSGTGEKRYKCNE-CGKVFSRNSQLSQHQKIHTGE----KPSGPSS 45
Score = 49.4 bits (119), Expect = 3e-08
Identities = 14/38 (36%), Positives = 19/38 (50%)
Query: 295 IHEGADPYQCDICRKTFIRKEDLTRHCLLHTGVKPHKC 332
G Y+C+ C K F R L++H +HTG KP
Sbjct: 6 SGTGEKRYKCNECGKVFSRNSQLSQHQKIHTGEKPSGP 43
Score = 48.3 bits (116), Expect = 7e-08
Identities = 14/43 (32%), Positives = 18/43 (41%)
Query: 234 RHMKTHSGVKPHVCEYCEKAFIQASQLKAHMFHHTGENGHTCE 276
+ +G K + C C K F + SQL H HTGE
Sbjct: 2 SSGSSGTGEKRYKCNECGKVFSRNSQLSQHQKIHTGEKPSGPS 44
Score = 47.9 bits (115), Expect = 1e-07
Identities = 12/41 (29%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Query: 123 HERLH-AEKLYECDICKNRFPSSGAMKKHRRKHTGERPYEC 162
EK Y+C+ C F + + +H++ HTGE+P
Sbjct: 3 SGSSGTGEKRYKCNECGKVFSRNSQLSQHQKIHTGEKPSGP 43
Score = 46.7 bits (112), Expect = 2e-07
Identities = 15/43 (34%), Positives = 17/43 (39%)
Query: 319 RHCLLHTGVKPHKCPICTKGFTMKSSLKIHLLTHTKEPPKSCE 361
TG K +KC C K F+ S L H HT E P
Sbjct: 2 SSGSSGTGEKRYKCNECGKVFSRNSQLSQHQKIHTGEKPSGPS 44
Score = 42.1 bits (100), Expect = 1e-05
Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 263 HMFHHTGENGHTCELCNKTFNRKARLELHMKYIHEGADPYQC 304
TGE + C C K F+R ++L H K IH G P
Sbjct: 3 SGSSGTGEKRYKCNECGKVFSRNSQLSQHQK-IHTGEKPSGP 43
Score = 38.7 bits (91), Expect = 2e-04
Identities = 13/45 (28%), Positives = 22/45 (48%), Gaps = 5/45 (11%)
Query: 91 HLRAHAGETKRKKKFKCDKCEKQFYGLTLLRIHERLH-AEKLYEC 134
+ GE K++KC++C K F + L H+++H EK
Sbjct: 3 SGSSGTGE----KRYKCNECGKVFSRNSQLSQHQKIHTGEKPSGP 43
Score = 35.2 bits (82), Expect = 0.004
Identities = 9/31 (29%), Positives = 13/31 (41%)
Query: 348 HLLTHTKEPPKSCEVCGRAFIRQDCLIRHLR 378
+ T E C CG+ F R L +H +
Sbjct: 3 SGSSGTGEKRYKCNECGKVFSRNSQLSQHQK 33
Score = 33.6 bits (78), Expect = 0.012
Identities = 11/32 (34%), Positives = 15/32 (46%), Gaps = 4/32 (12%)
Query: 78 CGRVFNRKDNLREHLRAHAGETKRKKKFKCDK 109
CG+VF+R L +H + H GE K
Sbjct: 18 CGKVFSRNSQLSQHQKIHTGE----KPSGPSS 45
>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 61.8 bits (151), Expect = 1e-12
Identities = 18/46 (39%), Positives = 22/46 (47%), Gaps = 5/46 (10%)
Query: 150 HRRKHTGERPYECKEVCGRVFNRKDNLREHLRAHAGETKRKKKFKC 195
+GERPY C E CG+ F R +L EHL+ H E K
Sbjct: 3 SGSSGSGERPYGCNE-CGKNFGRHSHLIEHLKRHFRE----KSSGP 43
Score = 48.3 bits (116), Expect = 7e-08
Identities = 12/38 (31%), Positives = 13/38 (34%)
Query: 295 IHEGADPYQCDICRKTFIRKEDLTRHCLLHTGVKPHKC 332
G PY C+ C K F R L H H K
Sbjct: 6 SGSGERPYGCNECGKNFGRHSHLIEHLKRHFREKSSGP 43
Score = 47.1 bits (113), Expect = 2e-07
Identities = 12/41 (29%), Positives = 17/41 (41%)
Query: 235 HMKTHSGVKPHVCEYCEKAFIQASQLKAHMFHHTGENGHTC 275
+ SG +P+ C C K F + S L H+ H E
Sbjct: 3 SGSSGSGERPYGCNECGKNFGRHSHLIEHLKRHFREKSSGP 43
Score = 46.0 bits (110), Expect = 4e-07
Identities = 8/41 (19%), Positives = 16/41 (39%), Gaps = 1/41 (2%)
Query: 123 HERLHA-EKLYECDICKNRFPSSGAMKKHRRKHTGERPYEC 162
+ E+ Y C+ C F + +H ++H E+
Sbjct: 3 SGSSGSGERPYGCNECGKNFGRHSHLIEHLKRHFREKSSGP 43
Score = 44.8 bits (107), Expect = 1e-06
Identities = 12/41 (29%), Positives = 16/41 (39%)
Query: 320 HCLLHTGVKPHKCPICTKGFTMKSSLKIHLLTHTKEPPKSC 360
+G +P+ C C K F S L HL H +E
Sbjct: 3 SGSSGSGERPYGCNECGKNFGRHSHLIEHLKRHFREKSSGP 43
Score = 42.5 bits (101), Expect = 9e-06
Identities = 11/42 (26%), Positives = 15/42 (35%), Gaps = 1/42 (2%)
Query: 263 HMFHHTGENGHTCELCNKTFNRKARLELHMKYIHEGADPYQC 304
+GE + C C K F R + L H+K H
Sbjct: 3 SGSSGSGERPYGCNECGKNFGRHSHLIEHLK-RHFREKSSGP 43
Score = 37.9 bits (89), Expect = 4e-04
Identities = 11/31 (35%), Positives = 15/31 (48%)
Query: 348 HLLTHTKEPPKSCEVCGRAFIRQDCLIRHLR 378
+ + E P C CG+ F R LI HL+
Sbjct: 3 SGSSGSGERPYGCNECGKNFGRHSHLIEHLK 33
Score = 34.8 bits (81), Expect = 0.004
Identities = 11/30 (36%), Positives = 14/30 (46%), Gaps = 4/30 (13%)
Query: 78 CGRVFNRKDNLREHLRAHAGETKRKKKFKC 107
CG+ F R +L EHL+ H E K
Sbjct: 18 CGKNFGRHSHLIEHLKRHFRE----KSSGP 43
Score = 33.3 bits (77), Expect = 0.018
Identities = 11/69 (15%), Positives = 18/69 (26%), Gaps = 28/69 (40%)
Query: 179 HLRAHAGETKRKKKFKCDKCEKQFYGLTLLRIHERLHGLIERTCYARFAAKETLNRHMKT 238
+ +GE + + C++C K F L H+K
Sbjct: 3 SGSSGSGE----RPYGCNECGK------------------------NFGRHSHLIEHLKR 34
Query: 239 HSGVKPHVC 247
H K
Sbjct: 35 HFREKSSGP 43
>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 61.4 bits (150), Expect = 2e-12
Identities = 20/47 (42%), Positives = 21/47 (44%), Gaps = 5/47 (10%)
Query: 149 KHRRKHTGERPYECKEVCGRVFNRKDNLREHLRAHAGETKRKKKFKC 195
TGER YEC E CG+ F RK L H R H GE K
Sbjct: 2 SSGSSGTGERHYECSE-CGKAFARKSTLIMHQRIHTGE----KPSGP 43
Score = 50.2 bits (121), Expect = 2e-08
Identities = 13/42 (30%), Positives = 18/42 (42%)
Query: 234 RHMKTHSGVKPHVCEYCEKAFIQASQLKAHMFHHTGENGHTC 275
+ +G + + C C KAF + S L H HTGE
Sbjct: 2 SSGSSGTGERHYECSECGKAFARKSTLIMHQRIHTGEKPSGP 43
Score = 49.8 bits (120), Expect = 2e-08
Identities = 15/38 (39%), Positives = 17/38 (44%)
Query: 295 IHEGADPYQCDICRKTFIRKEDLTRHCLLHTGVKPHKC 332
G Y+C C K F RK L H +HTG KP
Sbjct: 6 SGTGERHYECSECGKAFARKSTLIMHQRIHTGEKPSGP 43
Score = 49.4 bits (119), Expect = 3e-08
Identities = 13/41 (31%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Query: 123 HERLH-AEKLYECDICKNRFPSSGAMKKHRRKHTGERPYEC 162
E+ YEC C F + H+R HTGE+P
Sbjct: 3 SGSSGTGERHYECSECGKAFARKSTLIMHQRIHTGEKPSGP 43
Score = 47.1 bits (113), Expect = 2e-07
Identities = 14/42 (33%), Positives = 19/42 (45%)
Query: 319 RHCLLHTGVKPHKCPICTKGFTMKSSLKIHLLTHTKEPPKSC 360
TG + ++C C K F KS+L +H HT E P
Sbjct: 2 SSGSSGTGERHYECSECGKAFARKSTLIMHQRIHTGEKPSGP 43
Score = 42.1 bits (100), Expect = 1e-05
Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 263 HMFHHTGENGHTCELCNKTFNRKARLELHMKYIHEGADPYQC 304
TGE + C C K F RK+ L +H + IH G P
Sbjct: 3 SGSSGTGERHYECSECGKAFARKSTLIMHQR-IHTGEKPSGP 43
Score = 35.9 bits (84), Expect = 0.002
Identities = 12/31 (38%), Positives = 15/31 (48%)
Query: 348 HLLTHTKEPPKSCEVCGRAFIRQDCLIRHLR 378
+ T E C CG+AF R+ LI H R
Sbjct: 3 SGSSGTGERHYECSECGKAFARKSTLIMHQR 33
Score = 31.3 bits (72), Expect = 0.085
Identities = 12/30 (40%), Positives = 13/30 (43%), Gaps = 4/30 (13%)
Query: 78 CGRVFNRKDNLREHLRAHAGETKRKKKFKC 107
CG+ F RK L H R H GE K
Sbjct: 18 CGKAFARKSTLIMHQRIHTGE----KPSGP 43
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 54
Score = 61.4 bits (150), Expect = 2e-12
Identities = 14/54 (25%), Positives = 23/54 (42%), Gaps = 6/54 (11%)
Query: 150 HRRKHTGERPYECKEVCGRVFNRKDNLREHLRA-HAGETKRKKKFKCDKCEKQF 202
+ +PY C+ CG+ F+R D+L H++ H E + KC
Sbjct: 3 SGSSGSVGKPYICQS-CGKGFSRPDHLNGHIKQVHTSE----RPHKCQVWVSGP 51
Score = 59.1 bits (144), Expect = 1e-11
Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
Query: 295 IHEGADPYQCDICRKTFIRKEDLTRHC-LLHTGVKPHKCPICTKGFT 340
PY C C K F R + L H +HT +PHKC + G +
Sbjct: 6 SGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPS 52
Score = 58.0 bits (141), Expect = 3e-11
Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Query: 235 HMKTHSGVKPHVCEYCEKAFIQASQLKAHMFH-HTGENGHTCELCNKTFN 283
+ S KP++C+ C K F + L H+ HT E H C++ +
Sbjct: 3 SGSSGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPS 52
Score = 58.0 bits (141), Expect = 4e-11
Identities = 15/45 (33%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
Query: 324 HTGVKPHKCPICTKGFTMKSSLKIHL-LTHTKEPPKSCEVCGRAF 367
+ KP+ C C KGF+ L H+ HT E P C+V
Sbjct: 7 GSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGP 51
Score = 56.0 bits (136), Expect = 1e-10
Identities = 11/45 (24%), Positives = 20/45 (44%)
Query: 267 HTGENGHTCELCNKTFNRKARLELHMKYIHEGADPYQCDICRKTF 311
+ + C+ C K F+R L H+K +H P++C +
Sbjct: 7 GSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGP 51
Score = 52.2 bits (126), Expect = 3e-09
Identities = 12/51 (23%), Positives = 20/51 (39%), Gaps = 3/51 (5%)
Query: 123 HERLHA-EKLYECDICKNRFPSSGAMKKH-RRKHTGERPYECKEVCGRVFN 171
+ K Y C C F + H ++ HT ERP++C+ +
Sbjct: 3 SGSSGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQV-WVSGPS 52
Score = 41.8 bits (99), Expect = 2e-05
Identities = 11/79 (13%), Positives = 19/79 (24%), Gaps = 27/79 (34%)
Query: 179 HLRAHAGETKRKKKFKCDKCEKQFYGLTLLRIHERLHGLIERTCYARFAAKETLNRHMKT 238
+ + K + C C K F L H + +
Sbjct: 3 SGSSGSVG----KPYICQSCGKGFSRPDHLNGHIK-----------------------QV 35
Query: 239 HSGVKPHVCEYCEKAFIQA 257
H+ +PH C+
Sbjct: 36 HTSERPHKCQVWVSGPSSG 54
Score = 41.4 bits (98), Expect = 3e-05
Identities = 11/40 (27%), Positives = 18/40 (45%), Gaps = 5/40 (12%)
Query: 76 KVCGRVFNRKDNLREHLRA-HAGETKRKKKFKCDKCEKQF 114
+ CG+ F+R D+L H++ H E + KC
Sbjct: 16 QSCGKGFSRPDHLNGHIKQVHTSE----RPHKCQVWVSGP 51
Score = 39.5 bits (93), Expect = 1e-04
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 351 THTKEPPKSCEVCGRAFIRQDCLIRHLRQKH 381
+ + P C+ CG+ F R D L H++Q H
Sbjct: 6 SGSVGKPYICQSCGKGFSRPDHLNGHIKQVH 36
>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 61.4 bits (150), Expect = 2e-12
Identities = 19/49 (38%), Positives = 21/49 (42%), Gaps = 5/49 (10%)
Query: 149 KHRRKHTGERPYECKEVCGRVFNRKDNLREHLRAHAGETKRKKKFKCDK 197
TGER YEC E CG+ F +K L H R H GE K
Sbjct: 2 SSGSSGTGERHYECSE-CGKAFIQKSTLSMHQRIHRGE----KPSGPSS 45
Score = 49.1 bits (118), Expect = 4e-08
Identities = 12/41 (29%), Positives = 16/41 (39%), Gaps = 1/41 (2%)
Query: 123 HERLH-AEKLYECDICKNRFPSSGAMKKHRRKHTGERPYEC 162
E+ YEC C F + H+R H GE+P
Sbjct: 3 SGSSGTGERHYECSECGKAFIQKSTLSMHQRIHRGEKPSGP 43
Score = 49.1 bits (118), Expect = 4e-08
Identities = 14/38 (36%), Positives = 18/38 (47%)
Query: 295 IHEGADPYQCDICRKTFIRKEDLTRHCLLHTGVKPHKC 332
G Y+C C K FI+K L+ H +H G KP
Sbjct: 6 SGTGERHYECSECGKAFIQKSTLSMHQRIHRGEKPSGP 43
Score = 47.5 bits (114), Expect = 1e-07
Identities = 14/41 (34%), Positives = 18/41 (43%)
Query: 235 HMKTHSGVKPHVCEYCEKAFIQASQLKAHMFHHTGENGHTC 275
+ +G + + C C KAFIQ S L H H GE
Sbjct: 3 SGSSGTGERHYECSECGKAFIQKSTLSMHQRIHRGEKPSGP 43
Score = 46.4 bits (111), Expect = 4e-07
Identities = 13/41 (31%), Positives = 18/41 (43%)
Query: 320 HCLLHTGVKPHKCPICTKGFTMKSSLKIHLLTHTKEPPKSC 360
TG + ++C C K F KS+L +H H E P
Sbjct: 3 SGSSGTGERHYECSECGKAFIQKSTLSMHQRIHRGEKPSGP 43
Score = 40.2 bits (95), Expect = 6e-05
Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Query: 267 HTGENGHTCELCNKTFNRKARLELHMKYIHEGADPYQC 304
TGE + C C K F +K+ L +H + IH G P
Sbjct: 7 GTGERHYECSECGKAFIQKSTLSMHQR-IHRGEKPSGP 43
Score = 39.0 bits (92), Expect = 1e-04
Identities = 12/46 (26%), Positives = 21/46 (45%), Gaps = 5/46 (10%)
Query: 90 EHLRAHAGETKRKKKFKCDKCEKQFYGLTLLRIHERLH-AEKLYEC 134
+ GE + ++C +C K F + L +H+R+H EK
Sbjct: 2 SSGSSGTGE----RHYECSECGKAFIQKSTLSMHQRIHRGEKPSGP 43
Score = 35.2 bits (82), Expect = 0.003
Identities = 11/31 (35%), Positives = 15/31 (48%)
Query: 348 HLLTHTKEPPKSCEVCGRAFIRQDCLIRHLR 378
+ T E C CG+AFI++ L H R
Sbjct: 3 SGSSGTGERHYECSECGKAFIQKSTLSMHQR 33
Score = 31.3 bits (72), Expect = 0.073
Identities = 11/32 (34%), Positives = 13/32 (40%), Gaps = 4/32 (12%)
Query: 78 CGRVFNRKDNLREHLRAHAGETKRKKKFKCDK 109
CG+ F +K L H R H GE K
Sbjct: 18 CGKAFIQKSTLSMHQRIHRGE----KPSGPSS 45
>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 61.0 bits (149), Expect = 2e-12
Identities = 17/48 (35%), Positives = 20/48 (41%), Gaps = 5/48 (10%)
Query: 150 HRRKHTGERPYECKEVCGRVFNRKDNLREHLRAHAGETKRKKKFKCDK 197
TGE+PY+C E CG+ F NL H H GE K
Sbjct: 3 SGSSGTGEKPYKCNE-CGKAFRAHSNLTTHQVIHTGE----KPSGPSS 45
Score = 48.7 bits (117), Expect = 5e-08
Identities = 15/38 (39%), Positives = 20/38 (52%)
Query: 295 IHEGADPYQCDICRKTFIRKEDLTRHCLLHTGVKPHKC 332
G PY+C+ C K F +LT H ++HTG KP
Sbjct: 6 SGTGEKPYKCNECGKAFRAHSNLTTHQVIHTGEKPSGP 43
Score = 46.7 bits (112), Expect = 3e-07
Identities = 12/41 (29%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Query: 123 HERLH-AEKLYECDICKNRFPSSGAMKKHRRKHTGERPYEC 162
EK Y+C+ C F + + H+ HTGE+P
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRAHSNLTTHQVIHTGEKPSGP 43
Score = 46.7 bits (112), Expect = 3e-07
Identities = 15/42 (35%), Positives = 18/42 (42%)
Query: 235 HMKTHSGVKPHVCEYCEKAFIQASQLKAHMFHHTGENGHTCE 276
+ +G KP+ C C KAF S L H HTGE
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRAHSNLTTHQVIHTGEKPSGPS 44
Score = 46.4 bits (111), Expect = 3e-07
Identities = 16/42 (38%), Positives = 19/42 (45%)
Query: 320 HCLLHTGVKPHKCPICTKGFTMKSSLKIHLLTHTKEPPKSCE 361
TG KP+KC C K F S+L H + HT E P
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRAHSNLTTHQVIHTGEKPSGPS 44
Score = 39.4 bits (93), Expect = 1e-04
Identities = 13/43 (30%), Positives = 16/43 (37%), Gaps = 1/43 (2%)
Query: 262 AHMFHHTGENGHTCELCNKTFNRKARLELHMKYIHEGADPYQC 304
+ TGE + C C K F + L H IH G P
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFRAHSNLTTHQV-IHTGEKPSGP 43
Score = 37.9 bits (89), Expect = 3e-04
Identities = 13/45 (28%), Positives = 20/45 (44%), Gaps = 5/45 (11%)
Query: 91 HLRAHAGETKRKKKFKCDKCEKQFYGLTLLRIHERLH-AEKLYEC 134
+ GE K +KC++C K F + L H+ +H EK
Sbjct: 3 SGSSGTGE----KPYKCNECGKAFRAHSNLTTHQVIHTGEKPSGP 43
Score = 35.6 bits (83), Expect = 0.003
Identities = 10/31 (32%), Positives = 12/31 (38%)
Query: 348 HLLTHTKEPPKSCEVCGRAFIRQDCLIRHLR 378
+ T E P C CG+AF L H
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRAHSNLTTHQV 33
Score = 33.6 bits (78), Expect = 0.013
Identities = 10/32 (31%), Positives = 11/32 (34%), Gaps = 4/32 (12%)
Query: 78 CGRVFNRKDNLREHLRAHAGETKRKKKFKCDK 109
CG+ F NL H H GE K
Sbjct: 18 CGKAFRAHSNLTTHQVIHTGE----KPSGPSS 45
>2ent_A Krueppel-like factor 15; zinc binding, transcription factor,
adipogenesis, CLCNKA, chloride channel Ka, rhodopsin,
IRBP; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 48
Score = 61.2 bits (149), Expect = 2e-12
Identities = 16/48 (33%), Positives = 21/48 (43%), Gaps = 5/48 (10%)
Query: 150 HRRKHTGERPYECK-EVCGRVFNRKDNLREHLRAHAGETKRKKKFKCD 196
TGE+P+ C CG F+R D L H R+H+G K
Sbjct: 3 SGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGV----KPSGPS 46
Score = 48.8 bits (117), Expect = 5e-08
Identities = 10/44 (22%), Positives = 17/44 (38%), Gaps = 2/44 (4%)
Query: 235 HMKTHSGVKPHVCEY--CEKAFIQASQLKAHMFHHTGENGHTCE 276
+ +G KP C + C F ++ +L H H+G
Sbjct: 3 SGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGPS 46
Score = 48.5 bits (116), Expect = 7e-08
Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
Query: 295 IHEGADPYQCD--ICRKTFIRKEDLTRHCLLHTGVKPHKC 332
G P+ C C F R ++L+RH H+GVKP
Sbjct: 6 SGTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGP 45
Score = 48.5 bits (116), Expect = 8e-08
Identities = 13/43 (30%), Positives = 18/43 (41%), Gaps = 3/43 (6%)
Query: 123 HERLHA-EKLYECD--ICKNRFPSSGAMKKHRRKHTGERPYEC 162
EK + C C RF S + +HRR H+G +P
Sbjct: 3 SGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGP 45
Score = 44.6 bits (106), Expect = 1e-06
Identities = 12/44 (27%), Positives = 15/44 (34%), Gaps = 2/44 (4%)
Query: 320 HCLLHTGVKPHKC--PICTKGFTMKSSLKIHLLTHTKEPPKSCE 361
TG KP C P C F+ L H +H+ P
Sbjct: 3 SGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGPS 46
Score = 41.9 bits (99), Expect = 2e-05
Identities = 17/70 (24%), Positives = 23/70 (32%), Gaps = 26/70 (37%)
Query: 179 HLRAHAGETKRKKKFKCDKCEKQFYGLTLLRIHERLHGLIERTCYARFAAKETLNRHMKT 238
+ GE K F C C RF+ + L+RH ++
Sbjct: 3 SGSSGTGE----KPFACT----------------------WPGCGWRFSRSDELSRHRRS 36
Query: 239 HSGVKPHVCE 248
HSGVKP
Sbjct: 37 HSGVKPSGPS 46
Score = 36.5 bits (85), Expect = 0.001
Identities = 11/31 (35%), Positives = 14/31 (45%), Gaps = 4/31 (12%)
Query: 78 CGRVFNRKDNLREHLRAHAGETKRKKKFKCD 108
CG F+R D L H R+H+G K
Sbjct: 20 CGWRFSRSDELSRHRRSHSGV----KPSGPS 46
Score = 35.7 bits (83), Expect = 0.002
Identities = 14/36 (38%), Positives = 16/36 (44%), Gaps = 3/36 (8%)
Query: 348 HLLTHTKEPPKSC--EVCGRAFIRQDCLIRHLRQKH 381
+ T E P +C CG F R D L RH R H
Sbjct: 3 SGSSGTGEKPFACTWPGCGWRFSRSDELSRHRR-SH 37
>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2ena_A 2en4_A
Length = 46
Score = 61.0 bits (149), Expect = 3e-12
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 5/47 (10%)
Query: 149 KHRRKHTGERPYECKEVCGRVFNRKDNLREHLRAHAGETKRKKKFKC 195
TGE+P++C E CG+ F+R+ L H + H GE K
Sbjct: 2 SSGSSGTGEKPFKCVE-CGKGFSRRSALNVHHKLHTGE----KPSGP 43
Score = 49.4 bits (119), Expect = 3e-08
Identities = 15/38 (39%), Positives = 18/38 (47%)
Query: 295 IHEGADPYQCDICRKTFIRKEDLTRHCLLHTGVKPHKC 332
G P++C C K F R+ L H LHTG KP
Sbjct: 6 SGTGEKPFKCVECGKGFSRRSALNVHHKLHTGEKPSGP 43
Score = 49.1 bits (118), Expect = 4e-08
Identities = 12/41 (29%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Query: 123 HERLHA-EKLYECDICKNRFPSSGAMKKHRRKHTGERPYEC 162
EK ++C C F A+ H + HTGE+P
Sbjct: 3 SGSSGTGEKPFKCVECGKGFSRRSALNVHHKLHTGEKPSGP 43
Score = 49.1 bits (118), Expect = 5e-08
Identities = 17/42 (40%), Positives = 21/42 (50%)
Query: 319 RHCLLHTGVKPHKCPICTKGFTMKSSLKIHLLTHTKEPPKSC 360
TG KP KC C KGF+ +S+L +H HT E P
Sbjct: 2 SSGSSGTGEKPFKCVECGKGFSRRSALNVHHKLHTGEKPSGP 43
Score = 47.5 bits (114), Expect = 1e-07
Identities = 14/42 (33%), Positives = 17/42 (40%)
Query: 234 RHMKTHSGVKPHVCEYCEKAFIQASQLKAHMFHHTGENGHTC 275
+ +G KP C C K F + S L H HTGE
Sbjct: 2 SSGSSGTGEKPFKCVECGKGFSRRSALNVHHKLHTGEKPSGP 43
Score = 40.6 bits (96), Expect = 4e-05
Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 262 AHMFHHTGENGHTCELCNKTFNRKARLELHMKYIHEGADPYQC 304
+ TGE C C K F+R++ L +H K +H G P
Sbjct: 2 SSGSSGTGEKPFKCVECGKGFSRRSALNVHHK-LHTGEKPSGP 43
Score = 34.4 bits (80), Expect = 0.006
Identities = 12/37 (32%), Positives = 16/37 (43%), Gaps = 4/37 (10%)
Query: 348 HLLTHTKEPPKSCEVCGRAFIRQDCLIRHLRQKHRSH 384
+ T E P C CG+ F R+ L H H+ H
Sbjct: 3 SGSSGTGEKPFKCVECGKGFSRRSALNVH----HKLH 35
Score = 32.5 bits (75), Expect = 0.034
Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 4/30 (13%)
Query: 78 CGRVFNRKDNLREHLRAHAGETKRKKKFKC 107
CG+ F+R+ L H + H GE K
Sbjct: 18 CGKGFSRRSALNVHHKLHTGE----KPSGP 43
>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 60.6 bits (148), Expect = 3e-12
Identities = 19/46 (41%), Positives = 21/46 (45%), Gaps = 5/46 (10%)
Query: 150 HRRKHTGERPYECKEVCGRVFNRKDNLREHLRAHAGETKRKKKFKC 195
TGE+PYEC E C + FN K NL H R H GE
Sbjct: 3 SGSSGTGEKPYECNE-CQKAFNTKSNLMVHQRTHTGE----SGPSS 43
Score = 51.3 bits (124), Expect = 6e-09
Identities = 13/42 (30%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 122 IHERLHA-EKLYECDICKNRFPSSGAMKKHRRKHTGERPYEC 162
EK YEC+ C+ F + + H+R HTGE
Sbjct: 2 SSGSSGTGEKPYECNECQKAFNTKSNLMVHQRTHTGESGPSS 43
Score = 48.6 bits (117), Expect = 5e-08
Identities = 16/41 (39%), Positives = 22/41 (53%)
Query: 235 HMKTHSGVKPHVCEYCEKAFIQASQLKAHMFHHTGENGHTC 275
+ +G KP+ C C+KAF S L H HTGE+G +
Sbjct: 3 SGSSGTGEKPYECNECQKAFNTKSNLMVHQRTHTGESGPSS 43
Score = 47.9 bits (115), Expect = 9e-08
Identities = 13/38 (34%), Positives = 17/38 (44%)
Query: 295 IHEGADPYQCDICRKTFIRKEDLTRHCLLHTGVKPHKC 332
G PY+C+ C+K F K +L H HTG
Sbjct: 6 SGTGEKPYECNECQKAFNTKSNLMVHQRTHTGESGPSS 43
Score = 47.9 bits (115), Expect = 1e-07
Identities = 17/37 (45%), Positives = 21/37 (56%)
Query: 324 HTGVKPHKCPICTKGFTMKSSLKIHLLTHTKEPPKSC 360
TG KP++C C K F KS+L +H THT E S
Sbjct: 7 GTGEKPYECNECQKAFNTKSNLMVHQRTHTGESGPSS 43
Score = 40.5 bits (96), Expect = 4e-05
Identities = 13/43 (30%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Query: 262 AHMFHHTGENGHTCELCNKTFNRKARLELHMKYIHEGADPYQC 304
+ TGE + C C K FN K+ L +H + H G
Sbjct: 2 SSGSSGTGEKPYECNECQKAFNTKSNLMVHQR-THTGESGPSS 43
Score = 33.6 bits (78), Expect = 0.010
Identities = 10/32 (31%), Positives = 14/32 (43%)
Query: 347 IHLLTHTKEPPKSCEVCGRAFIRQDCLIRHLR 378
+ T E P C C +AF + L+ H R
Sbjct: 2 SSGSSGTGEKPYECNECQKAFNTKSNLMVHQR 33
Score = 32.5 bits (75), Expect = 0.031
Identities = 11/30 (36%), Positives = 12/30 (40%), Gaps = 4/30 (13%)
Query: 78 CGRVFNRKDNLREHLRAHAGETKRKKKFKC 107
C + FN K NL H R H GE
Sbjct: 18 CQKAFNTKSNLMVHQRTHTGE----SGPSS 43
Score = 31.7 bits (73), Expect = 0.055
Identities = 13/69 (18%), Positives = 21/69 (30%), Gaps = 28/69 (40%)
Query: 179 HLRAHAGETKRKKKFKCDKCEKQFYGLTLLRIHERLHGLIERTCYARFAAKETLNRHMKT 238
+ GE K ++C++C+K F K L H +T
Sbjct: 3 SGSSGTGE----KPYECNECQK------------------------AFNTKSNLMVHQRT 34
Query: 239 HSGVKPHVC 247
H+G
Sbjct: 35 HTGESGPSS 43
>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 60.6 bits (148), Expect = 3e-12
Identities = 16/48 (33%), Positives = 20/48 (41%), Gaps = 5/48 (10%)
Query: 150 HRRKHTGERPYECKEVCGRVFNRKDNLREHLRAHAGETKRKKKFKCDK 197
TG + +EC E CG+ F RK L H + H GE K
Sbjct: 3 SGSSGTGGKHFECTE-CGKAFTRKSTLSMHQKIHTGE----KPSGPSS 45
Score = 49.4 bits (119), Expect = 3e-08
Identities = 14/38 (36%), Positives = 18/38 (47%)
Query: 295 IHEGADPYQCDICRKTFIRKEDLTRHCLLHTGVKPHKC 332
G ++C C K F RK L+ H +HTG KP
Sbjct: 6 SGTGGKHFECTECGKAFTRKSTLSMHQKIHTGEKPSGP 43
Score = 48.7 bits (117), Expect = 5e-08
Identities = 11/41 (26%), Positives = 16/41 (39%), Gaps = 1/41 (2%)
Query: 123 HERLHA-EKLYECDICKNRFPSSGAMKKHRRKHTGERPYEC 162
K +EC C F + H++ HTGE+P
Sbjct: 3 SGSSGTGGKHFECTECGKAFTRKSTLSMHQKIHTGEKPSGP 43
Score = 47.1 bits (113), Expect = 2e-07
Identities = 14/43 (32%), Positives = 17/43 (39%)
Query: 234 RHMKTHSGVKPHVCEYCEKAFIQASQLKAHMFHHTGENGHTCE 276
+ +G K C C KAF + S L H HTGE
Sbjct: 2 SSGSSGTGGKHFECTECGKAFTRKSTLSMHQKIHTGEKPSGPS 44
Score = 47.1 bits (113), Expect = 2e-07
Identities = 16/43 (37%), Positives = 19/43 (44%)
Query: 319 RHCLLHTGVKPHKCPICTKGFTMKSSLKIHLLTHTKEPPKSCE 361
TG K +C C K FT KS+L +H HT E P
Sbjct: 2 SSGSSGTGGKHFECTECGKAFTRKSTLSMHQKIHTGEKPSGPS 44
Score = 41.7 bits (99), Expect = 2e-05
Identities = 15/43 (34%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Query: 262 AHMFHHTGENGHTCELCNKTFNRKARLELHMKYIHEGADPYQC 304
+ TG C C K F RK+ L +H K IH G P
Sbjct: 2 SSGSSGTGGKHFECTECGKAFTRKSTLSMHQK-IHTGEKPSGP 43
Score = 38.3 bits (90), Expect = 3e-04
Identities = 12/45 (26%), Positives = 20/45 (44%), Gaps = 5/45 (11%)
Query: 91 HLRAHAGETKRKKKFKCDKCEKQFYGLTLLRIHERLH-AEKLYEC 134
+ G K F+C +C K F + L +H+++H EK
Sbjct: 3 SGSSGTGG----KHFECTECGKAFTRKSTLSMHQKIHTGEKPSGP 43
Score = 34.4 bits (80), Expect = 0.006
Identities = 9/31 (29%), Positives = 13/31 (41%)
Query: 348 HLLTHTKEPPKSCEVCGRAFIRQDCLIRHLR 378
+ T C CG+AF R+ L H +
Sbjct: 3 SGSSGTGGKHFECTECGKAFTRKSTLSMHQK 33
Score = 32.5 bits (75), Expect = 0.036
Identities = 11/32 (34%), Positives = 13/32 (40%), Gaps = 4/32 (12%)
Query: 78 CGRVFNRKDNLREHLRAHAGETKRKKKFKCDK 109
CG+ F RK L H + H GE K
Sbjct: 18 CGKAFTRKSTLSMHQKIHTGE----KPSGPSS 45
>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 60.6 bits (148), Expect = 3e-12
Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 5/48 (10%)
Query: 150 HRRKHTGERPYECKEVCGRVFNRKDNLREHLRAHAGETKRKKKFKCDK 197
TGERP++C E CG+ F + +L +H R H GE K
Sbjct: 3 SGSSGTGERPHKCNE-CGKSFIQSAHLIQHQRIHTGE----KPSGPSS 45
Score = 49.4 bits (119), Expect = 3e-08
Identities = 14/38 (36%), Positives = 21/38 (55%)
Query: 295 IHEGADPYQCDICRKTFIRKEDLTRHCLLHTGVKPHKC 332
G P++C+ C K+FI+ L +H +HTG KP
Sbjct: 6 SGTGERPHKCNECGKSFIQSAHLIQHQRIHTGEKPSGP 43
Score = 48.7 bits (117), Expect = 5e-08
Identities = 15/43 (34%), Positives = 21/43 (48%)
Query: 234 RHMKTHSGVKPHVCEYCEKAFIQASQLKAHMFHHTGENGHTCE 276
+ +G +PH C C K+FIQ++ L H HTGE
Sbjct: 2 SSGSSGTGERPHKCNECGKSFIQSAHLIQHQRIHTGEKPSGPS 44
Score = 48.3 bits (116), Expect = 8e-08
Identities = 12/41 (29%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Query: 123 HERLH-AEKLYECDICKNRFPSSGAMKKHRRKHTGERPYEC 162
E+ ++C+ C F S + +H+R HTGE+P
Sbjct: 3 SGSSGTGERPHKCNECGKSFIQSAHLIQHQRIHTGEKPSGP 43
Score = 46.3 bits (111), Expect = 4e-07
Identities = 15/43 (34%), Positives = 17/43 (39%)
Query: 319 RHCLLHTGVKPHKCPICTKGFTMKSSLKIHLLTHTKEPPKSCE 361
TG +PHKC C K F + L H HT E P
Sbjct: 2 SSGSSGTGERPHKCNECGKSFIQSAHLIQHQRIHTGEKPSGPS 44
Score = 40.6 bits (96), Expect = 4e-05
Identities = 15/42 (35%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 263 HMFHHTGENGHTCELCNKTFNRKARLELHMKYIHEGADPYQC 304
TGE H C C K+F + A L H + IH G P
Sbjct: 3 SGSSGTGERPHKCNECGKSFIQSAHLIQHQR-IHTGEKPSGP 43
Score = 34.8 bits (81), Expect = 0.005
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 348 HLLTHTKEPPKSCEVCGRAFIRQDCLIRHLR 378
+ T E P C CG++FI+ LI+H R
Sbjct: 3 SGSSGTGERPHKCNECGKSFIQSAHLIQHQR 33
Score = 32.1 bits (74), Expect = 0.046
Identities = 10/32 (31%), Positives = 14/32 (43%), Gaps = 4/32 (12%)
Query: 78 CGRVFNRKDNLREHLRAHAGETKRKKKFKCDK 109
CG+ F + +L +H R H GE K
Sbjct: 18 CGKSFIQSAHLIQHQRIHTGE----KPSGPSS 45
>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 60.6 bits (148), Expect = 4e-12
Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 5/49 (10%)
Query: 149 KHRRKHTGERPYECKEVCGRVFNRKDNLREHLRAHAGETKRKKKFKCDK 197
TGE+PY+C E CG+ F + +L H H+GE K
Sbjct: 2 SSGSSGTGEKPYKCNE-CGKAFRARSSLAIHQATHSGE----KPSGPSS 45
Score = 49.8 bits (120), Expect = 2e-08
Identities = 11/41 (26%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Query: 123 HERLH-AEKLYECDICKNRFPSSGAMKKHRRKHTGERPYEC 162
EK Y+C+ C F + ++ H+ H+GE+P
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRARSSLAIHQATHSGEKPSGP 43
Score = 48.7 bits (117), Expect = 5e-08
Identities = 18/42 (42%), Positives = 21/42 (50%)
Query: 319 RHCLLHTGVKPHKCPICTKGFTMKSSLKIHLLTHTKEPPKSC 360
TG KP+KC C K F +SSL IH TH+ E P
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFRARSSLAIHQATHSGEKPSGP 43
Score = 47.1 bits (113), Expect = 2e-07
Identities = 13/38 (34%), Positives = 17/38 (44%)
Query: 295 IHEGADPYQCDICRKTFIRKEDLTRHCLLHTGVKPHKC 332
G PY+C+ C K F + L H H+G KP
Sbjct: 6 SGTGEKPYKCNECGKAFRARSSLAIHQATHSGEKPSGP 43
Score = 46.8 bits (112), Expect = 3e-07
Identities = 14/42 (33%), Positives = 18/42 (42%)
Query: 234 RHMKTHSGVKPHVCEYCEKAFIQASQLKAHMFHHTGENGHTC 275
+ +G KP+ C C KAF S L H H+GE
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFRARSSLAIHQATHSGEKPSGP 43
Score = 40.6 bits (96), Expect = 5e-05
Identities = 14/45 (31%), Positives = 20/45 (44%), Gaps = 5/45 (11%)
Query: 91 HLRAHAGETKRKKKFKCDKCEKQFYGLTLLRIHERLH-AEKLYEC 134
+ GE K +KC++C K F + L IH+ H EK
Sbjct: 3 SGSSGTGE----KPYKCNECGKAFRARSSLAIHQATHSGEKPSGP 43
Score = 38.7 bits (91), Expect = 2e-04
Identities = 12/38 (31%), Positives = 16/38 (42%), Gaps = 1/38 (2%)
Query: 267 HTGENGHTCELCNKTFNRKARLELHMKYIHEGADPYQC 304
TGE + C C K F ++ L +H H G P
Sbjct: 7 GTGEKPYKCNECGKAFRARSSLAIHQA-THSGEKPSGP 43
Score = 32.1 bits (74), Expect = 0.045
Identities = 9/32 (28%), Positives = 13/32 (40%), Gaps = 4/32 (12%)
Query: 78 CGRVFNRKDNLREHLRAHAGETKRKKKFKCDK 109
CG+ F + +L H H+GE K
Sbjct: 18 CGKAFRARSSLAIHQATHSGE----KPSGPSS 45
Score = 32.1 bits (74), Expect = 0.047
Identities = 10/31 (32%), Positives = 13/31 (41%)
Query: 348 HLLTHTKEPPKSCEVCGRAFIRQDCLIRHLR 378
+ T E P C CG+AF + L H
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRARSSLAIHQA 33
>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 60.7 bits (148), Expect = 4e-12
Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 150 HRRKHTGERPYECKEVCGRVFNRKDNLREHLRAHAGE 186
TGE+P++CKE CG F+ +L +HLR+H
Sbjct: 3 SGSSGTGEKPFQCKE-CGMNFSWSCSLFKHLRSHERT 38
Score = 50.7 bits (122), Expect = 1e-08
Identities = 13/37 (35%), Positives = 17/37 (45%)
Query: 324 HTGVKPHKCPICTKGFTMKSSLKIHLLTHTKEPPKSC 360
TG KP +C C F+ SL HL +H + P
Sbjct: 7 GTGEKPFQCKECGMNFSWSCSLFKHLRSHERTDPSGP 43
Score = 49.1 bits (118), Expect = 4e-08
Identities = 9/41 (21%), Positives = 15/41 (36%)
Query: 235 HMKTHSGVKPHVCEYCEKAFIQASQLKAHMFHHTGENGHTC 275
+ +G KP C+ C F + L H+ H +
Sbjct: 3 SGSSGTGEKPFQCKECGMNFSWSCSLFKHLRSHERTDPSGP 43
Score = 48.0 bits (115), Expect = 9e-08
Identities = 11/41 (26%), Positives = 15/41 (36%), Gaps = 1/41 (2%)
Query: 123 HERLH-AEKLYECDICKNRFPSSGAMKKHRRKHTGERPYEC 162
EK ++C C F S ++ KH R H P
Sbjct: 3 SGSSGTGEKPFQCKECGMNFSWSCSLFKHLRSHERTDPSGP 43
Score = 43.7 bits (104), Expect = 3e-06
Identities = 10/37 (27%), Positives = 12/37 (32%)
Query: 296 HEGADPYQCDICRKTFIRKEDLTRHCLLHTGVKPHKC 332
G P+QC C F L +H H P
Sbjct: 7 GTGEKPFQCKECGMNFSWSCSLFKHLRSHERTDPSGP 43
Score = 41.0 bits (97), Expect = 3e-05
Identities = 12/44 (27%), Positives = 17/44 (38%), Gaps = 1/44 (2%)
Query: 262 AHMFHHTGENGHTCELCNKTFNRKARLELHMKYIHEGADPYQCD 305
+ TGE C+ C F+ L H++ HE DP
Sbjct: 2 SSGSSGTGEKPFQCKECGMNFSWSCSLFKHLR-SHERTDPSGPS 44
Score = 37.9 bits (89), Expect = 3e-04
Identities = 11/31 (35%), Positives = 14/31 (45%)
Query: 348 HLLTHTKEPPKSCEVCGRAFIRQDCLIRHLR 378
+ T E P C+ CG F L +HLR
Sbjct: 3 SGSSGTGEKPFQCKECGMNFSWSCSLFKHLR 33
Score = 34.1 bits (79), Expect = 0.007
Identities = 11/69 (15%), Positives = 20/69 (28%), Gaps = 28/69 (40%)
Query: 179 HLRAHAGETKRKKKFKCDKCEKQFYGLTLLRIHERLHGLIERTCYARFAAKETLNRHMKT 238
+ GE K F+C +C F + +L +H+++
Sbjct: 3 SGSSGTGE----KPFQCKECGMNF------------------------SWSCSLFKHLRS 34
Query: 239 HSGVKPHVC 247
H P
Sbjct: 35 HERTDPSGP 43
Score = 32.9 bits (76), Expect = 0.019
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 76 KVCGRVFNRKDNLREHLRAHAGE 98
K CG F+ +L +HLR+H
Sbjct: 16 KECGMNFSWSCSLFKHLRSHERT 38
>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 60.6 bits (148), Expect = 4e-12
Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 5/46 (10%)
Query: 150 HRRKHTGERPYECKEVCGRVFNRKDNLREHLRAHAGETKRKKKFKC 195
TGE+ Y CKE CG+ F+R L +H R H+GE K
Sbjct: 3 SGSSGTGEKLYNCKE-CGKSFSRAPCLLKHERLHSGE----KPSGP 43
Score = 49.8 bits (120), Expect = 2e-08
Identities = 14/41 (34%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Query: 123 HERLH-AEKLYECDICKNRFPSSGAMKKHRRKHTGERPYEC 162
EKLY C C F + + KH R H+GE+P
Sbjct: 3 SGSSGTGEKLYNCKECGKSFSRAPCLLKHERLHSGEKPSGP 43
Score = 47.9 bits (115), Expect = 9e-08
Identities = 14/38 (36%), Positives = 17/38 (44%)
Query: 295 IHEGADPYQCDICRKTFIRKEDLTRHCLLHTGVKPHKC 332
G Y C C K+F R L +H LH+G KP
Sbjct: 6 SGTGEKLYNCKECGKSFSRAPCLLKHERLHSGEKPSGP 43
Score = 47.1 bits (113), Expect = 2e-07
Identities = 12/41 (29%), Positives = 19/41 (46%)
Query: 235 HMKTHSGVKPHVCEYCEKAFIQASQLKAHMFHHTGENGHTC 275
+ +G K + C+ C K+F +A L H H+GE
Sbjct: 3 SGSSGTGEKLYNCKECGKSFSRAPCLLKHERLHSGEKPSGP 43
Score = 45.2 bits (108), Expect = 1e-06
Identities = 12/41 (29%), Positives = 15/41 (36%)
Query: 320 HCLLHTGVKPHKCPICTKGFTMKSSLKIHLLTHTKEPPKSC 360
TG K + C C K F+ L H H+ E P
Sbjct: 3 SGSSGTGEKLYNCKECGKSFSRAPCLLKHERLHSGEKPSGP 43
Score = 42.9 bits (102), Expect = 6e-06
Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 262 AHMFHHTGENGHTCELCNKTFNRKARLELHMKYIHEGADPYQC 304
+ TGE + C+ C K+F+R L H + +H G P
Sbjct: 2 SSGSSGTGEKLYNCKECGKSFSRAPCLLKHER-LHSGEKPSGP 43
Score = 39.0 bits (92), Expect = 2e-04
Identities = 15/45 (33%), Positives = 19/45 (42%), Gaps = 5/45 (11%)
Query: 91 HLRAHAGETKRKKKFKCDKCEKQFYGLTLLRIHERLHA-EKLYEC 134
+ GE K + C +C K F L HERLH+ EK
Sbjct: 3 SGSSGTGE----KLYNCKECGKSFSRAPCLLKHERLHSGEKPSGP 43
Score = 37.5 bits (88), Expect = 6e-04
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 348 HLLTHTKEPPKSCEVCGRAFIRQDCLIRHLR 378
+ T E +C+ CG++F R CL++H R
Sbjct: 3 SGSSGTGEKLYNCKECGKSFSRAPCLLKHER 33
Score = 31.3 bits (72), Expect = 0.080
Identities = 11/30 (36%), Positives = 15/30 (50%), Gaps = 4/30 (13%)
Query: 78 CGRVFNRKDNLREHLRAHAGETKRKKKFKC 107
CG+ F+R L +H R H+GE K
Sbjct: 18 CGKSFSRAPCLLKHERLHSGE----KPSGP 43
>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 60.6 bits (148), Expect = 4e-12
Identities = 18/47 (38%), Positives = 22/47 (46%), Gaps = 5/47 (10%)
Query: 149 KHRRKHTGERPYECKEVCGRVFNRKDNLREHLRAHAGETKRKKKFKC 195
TGE+PY C E CG+ F +K +L H R H GE K
Sbjct: 2 SSGSSGTGEKPYICNE-CGKSFIQKSHLNRHRRIHTGE----KPSGP 43
Score = 49.8 bits (120), Expect = 2e-08
Identities = 17/38 (44%), Positives = 21/38 (55%)
Query: 295 IHEGADPYQCDICRKTFIRKEDLTRHCLLHTGVKPHKC 332
G PY C+ C K+FI+K L RH +HTG KP
Sbjct: 6 SGTGEKPYICNECGKSFIQKSHLNRHRRIHTGEKPSGP 43
Score = 49.4 bits (119), Expect = 3e-08
Identities = 14/43 (32%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Query: 123 HERLH-AEKLYECDICKNRFPSSGAMKKHRRKHTGERPYECKE 164
EK Y C+ C F + +HRR HTGE+P
Sbjct: 3 SGSSGTGEKPYICNECGKSFIQKSHLNRHRRIHTGEKPSGPSS 45
Score = 49.0 bits (118), Expect = 5e-08
Identities = 16/42 (38%), Positives = 21/42 (50%)
Query: 235 HMKTHSGVKPHVCEYCEKAFIQASQLKAHMFHHTGENGHTCE 276
+ +G KP++C C K+FIQ S L H HTGE
Sbjct: 3 SGSSGTGEKPYICNECGKSFIQKSHLNRHRRIHTGEKPSGPS 44
Score = 46.0 bits (110), Expect = 5e-07
Identities = 16/42 (38%), Positives = 17/42 (40%)
Query: 320 HCLLHTGVKPHKCPICTKGFTMKSSLKIHLLTHTKEPPKSCE 361
TG KP+ C C K F KS L H HT E P
Sbjct: 3 SGSSGTGEKPYICNECGKSFIQKSHLNRHRRIHTGEKPSGPS 44
Score = 41.3 bits (98), Expect = 2e-05
Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 262 AHMFHHTGENGHTCELCNKTFNRKARLELHMKYIHEGADPYQC 304
+ TGE + C C K+F +K+ L H + IH G P
Sbjct: 2 SSGSSGTGEKPYICNECGKSFIQKSHLNRHRR-IHTGEKPSGP 43
Score = 36.0 bits (84), Expect = 0.002
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 348 HLLTHTKEPPKSCEVCGRAFIRQDCLIRHLR 378
+ T E P C CG++FI++ L RH R
Sbjct: 3 SGSSGTGEKPYICNECGKSFIQKSHLNRHRR 33
Score = 30.9 bits (71), Expect = 0.10
Identities = 11/30 (36%), Positives = 14/30 (46%), Gaps = 4/30 (13%)
Query: 78 CGRVFNRKDNLREHLRAHAGETKRKKKFKC 107
CG+ F +K +L H R H GE K
Sbjct: 18 CGKSFIQKSHLNRHRRIHTGE----KPSGP 43
>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 60.6 bits (148), Expect = 4e-12
Identities = 18/49 (36%), Positives = 22/49 (44%), Gaps = 5/49 (10%)
Query: 149 KHRRKHTGERPYECKEVCGRVFNRKDNLREHLRAHAGETKRKKKFKCDK 197
TGE+PY+C E CG+VF R +L H H GE K
Sbjct: 2 SSGSSGTGEKPYKCHE-CGKVFRRNSHLARHQLIHTGE----KPSGPSS 45
Score = 49.8 bits (120), Expect = 2e-08
Identities = 17/38 (44%), Positives = 19/38 (50%)
Query: 295 IHEGADPYQCDICRKTFIRKEDLTRHCLLHTGVKPHKC 332
G PY+C C K F R L RH L+HTG KP
Sbjct: 6 SGTGEKPYKCHECGKVFRRNSHLARHQLIHTGEKPSGP 43
Score = 49.0 bits (118), Expect = 4e-08
Identities = 14/43 (32%), Positives = 18/43 (41%)
Query: 234 RHMKTHSGVKPHVCEYCEKAFIQASQLKAHMFHHTGENGHTCE 276
+ +G KP+ C C K F + S L H HTGE
Sbjct: 2 SSGSSGTGEKPYKCHECGKVFRRNSHLARHQLIHTGEKPSGPS 44
Score = 47.1 bits (113), Expect = 2e-07
Identities = 12/41 (29%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Query: 123 HERLH-AEKLYECDICKNRFPSSGAMKKHRRKHTGERPYEC 162
EK Y+C C F + + +H+ HTGE+P
Sbjct: 3 SGSSGTGEKPYKCHECGKVFRRNSHLARHQLIHTGEKPSGP 43
Score = 45.5 bits (109), Expect = 6e-07
Identities = 17/43 (39%), Positives = 18/43 (41%)
Query: 319 RHCLLHTGVKPHKCPICTKGFTMKSSLKIHLLTHTKEPPKSCE 361
TG KP+KC C K F S L H L HT E P
Sbjct: 2 SSGSSGTGEKPYKCHECGKVFRRNSHLARHQLIHTGEKPSGPS 44
Score = 42.5 bits (101), Expect = 1e-05
Identities = 14/43 (32%), Positives = 17/43 (39%), Gaps = 1/43 (2%)
Query: 262 AHMFHHTGENGHTCELCNKTFNRKARLELHMKYIHEGADPYQC 304
+ TGE + C C K F R + L H IH G P
Sbjct: 2 SSGSSGTGEKPYKCHECGKVFRRNSHLARHQL-IHTGEKPSGP 43
Score = 37.1 bits (87), Expect = 7e-04
Identities = 13/45 (28%), Positives = 19/45 (42%), Gaps = 5/45 (11%)
Query: 91 HLRAHAGETKRKKKFKCDKCEKQFYGLTLLRIHERLH-AEKLYEC 134
+ GE K +KC +C K F + L H+ +H EK
Sbjct: 3 SGSSGTGE----KPYKCHECGKVFRRNSHLARHQLIHTGEKPSGP 43
Score = 34.4 bits (80), Expect = 0.007
Identities = 11/31 (35%), Positives = 13/31 (41%)
Query: 348 HLLTHTKEPPKSCEVCGRAFIRQDCLIRHLR 378
+ T E P C CG+ F R L RH
Sbjct: 3 SGSSGTGEKPYKCHECGKVFRRNSHLARHQL 33
Score = 32.8 bits (76), Expect = 0.026
Identities = 11/34 (32%), Positives = 13/34 (38%), Gaps = 4/34 (11%)
Query: 76 KVCGRVFNRKDNLREHLRAHAGETKRKKKFKCDK 109
CG+VF R +L H H GE K
Sbjct: 16 HECGKVFRRNSHLARHQLIHTGE----KPSGPSS 45
>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 60.2 bits (147), Expect = 4e-12
Identities = 13/38 (34%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Query: 149 KHRRKHTGERPYECKEVCGRVFNRKDNLREHLRAHAGE 186
GER + C + CG+ F + N +H R H GE
Sbjct: 2 SSGSSGHGERGHRCSD-CGKFFLQASNFIQHRRIHTGE 38
Score = 48.3 bits (116), Expect = 8e-08
Identities = 14/37 (37%), Positives = 17/37 (45%)
Query: 234 RHMKTHSGVKPHVCEYCEKAFIQASQLKAHMFHHTGE 270
+ G + H C C K F+QAS H HTGE
Sbjct: 2 SSGSSGHGERGHRCSDCGKFFLQASNFIQHRRIHTGE 38
Score = 47.1 bits (113), Expect = 2e-07
Identities = 11/40 (27%), Positives = 18/40 (45%)
Query: 293 KYIHEGADPYQCDICRKTFIRKEDLTRHCLLHTGVKPHKC 332
G ++C C K F++ + +H +HTG KP
Sbjct: 4 GSSGHGERGHRCSDCGKFFLQASNFIQHRRIHTGEKPSGP 43
Score = 47.1 bits (113), Expect = 2e-07
Identities = 12/37 (32%), Positives = 15/37 (40%)
Query: 324 HTGVKPHKCPICTKGFTMKSSLKIHLLTHTKEPPKSC 360
G + H+C C K F S+ H HT E P
Sbjct: 7 GHGERGHRCSDCGKFFLQASNFIQHRRIHTGEKPSGP 43
Score = 46.0 bits (110), Expect = 5e-07
Identities = 12/41 (29%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Query: 123 HERLHA-EKLYECDICKNRFPSSGAMKKHRRKHTGERPYEC 162
E+ + C C F + +HRR HTGE+P
Sbjct: 3 SGSSGHGERGHRCSDCGKFFLQASNFIQHRRIHTGEKPSGP 43
Score = 40.2 bits (95), Expect = 6e-05
Identities = 13/42 (30%), Positives = 16/42 (38%), Gaps = 1/42 (2%)
Query: 263 HMFHHTGENGHTCELCNKTFNRKARLELHMKYIHEGADPYQC 304
GE GH C C K F + + H + IH G P
Sbjct: 3 SGSSGHGERGHRCSDCGKFFLQASNFIQHRR-IHTGEKPSGP 43
Score = 37.5 bits (88), Expect = 5e-04
Identities = 8/31 (25%), Positives = 13/31 (41%)
Query: 348 HLLTHTKEPPKSCEVCGRAFIRQDCLIRHLR 378
+ E C CG+ F++ I+H R
Sbjct: 3 SGSSGHGERGHRCSDCGKFFLQASNFIQHRR 33
Score = 30.2 bits (69), Expect = 0.18
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 78 CGRVFNRKDNLREHLRAHAGE 98
CG+ F + N +H R H GE
Sbjct: 18 CGKFFLQASNFIQHRRIHTGE 38
>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 46
Score = 60.2 bits (147), Expect = 4e-12
Identities = 19/47 (40%), Positives = 23/47 (48%), Gaps = 5/47 (10%)
Query: 149 KHRRKHTGERPYECKEVCGRVFNRKDNLREHLRAHAGETKRKKKFKC 195
TG+RPYEC E CG+ F K +L H R+H GE K
Sbjct: 2 SSGSSGTGQRPYECIE-CGKAFKTKSSLICHRRSHTGE----KPSGP 43
Score = 54.1 bits (131), Expect = 7e-10
Identities = 13/43 (30%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Query: 123 HERLH-AEKLYECDICKNRFPSSGAMKKHRRKHTGERPYECKE 164
++ YEC C F + ++ HRR HTGE+P
Sbjct: 3 SGSSGTGQRPYECIECGKAFKTKSSLICHRRSHTGEKPSGPSS 45
Score = 49.5 bits (119), Expect = 3e-08
Identities = 14/42 (33%), Positives = 18/42 (42%)
Query: 234 RHMKTHSGVKPHVCEYCEKAFIQASQLKAHMFHHTGENGHTC 275
+ +G +P+ C C KAF S L H HTGE
Sbjct: 2 SSGSSGTGQRPYECIECGKAFKTKSSLICHRRSHTGEKPSGP 43
Score = 48.3 bits (116), Expect = 7e-08
Identities = 16/42 (38%), Positives = 20/42 (47%)
Query: 319 RHCLLHTGVKPHKCPICTKGFTMKSSLKIHLLTHTKEPPKSC 360
TG +P++C C K F KSSL H +HT E P
Sbjct: 2 SSGSSGTGQRPYECIECGKAFKTKSSLICHRRSHTGEKPSGP 43
Score = 47.1 bits (113), Expect = 2e-07
Identities = 15/38 (39%), Positives = 16/38 (42%)
Query: 295 IHEGADPYQCDICRKTFIRKEDLTRHCLLHTGVKPHKC 332
G PY+C C K F K L H HTG KP
Sbjct: 6 SGTGQRPYECIECGKAFKTKSSLICHRRSHTGEKPSGP 43
Score = 39.4 bits (93), Expect = 9e-05
Identities = 12/42 (28%), Positives = 16/42 (38%), Gaps = 1/42 (2%)
Query: 263 HMFHHTGENGHTCELCNKTFNRKARLELHMKYIHEGADPYQC 304
TG+ + C C K F K+ L H + H G P
Sbjct: 3 SGSSGTGQRPYECIECGKAFKTKSSLICHRR-SHTGEKPSGP 43
Score = 34.8 bits (81), Expect = 0.004
Identities = 11/31 (35%), Positives = 15/31 (48%)
Query: 348 HLLTHTKEPPKSCEVCGRAFIRQDCLIRHLR 378
+ T + P C CG+AF + LI H R
Sbjct: 3 SGSSGTGQRPYECIECGKAFKTKSSLICHRR 33
Score = 29.8 bits (68), Expect = 0.24
Identities = 11/30 (36%), Positives = 14/30 (46%), Gaps = 4/30 (13%)
Query: 78 CGRVFNRKDNLREHLRAHAGETKRKKKFKC 107
CG+ F K +L H R+H GE K
Sbjct: 18 CGKAFKTKSSLICHRRSHTGE----KPSGP 43
>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 60.2 bits (147), Expect = 4e-12
Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 5/47 (10%)
Query: 149 KHRRKHTGERPYECKEVCGRVFNRKDNLREHLRAHAGETKRKKKFKC 195
TGE+PY+C E CG+ F++ L H R H GE K
Sbjct: 2 SSGSSGTGEKPYKCNE-CGKAFSQTSKLARHQRIHTGE----KPSGP 43
Score = 49.1 bits (118), Expect = 4e-08
Identities = 16/43 (37%), Positives = 20/43 (46%)
Query: 234 RHMKTHSGVKPHVCEYCEKAFIQASQLKAHMFHHTGENGHTCE 276
+ +G KP+ C C KAF Q S+L H HTGE
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFSQTSKLARHQRIHTGEKPSGPS 44
Score = 48.7 bits (117), Expect = 5e-08
Identities = 15/38 (39%), Positives = 19/38 (50%)
Query: 295 IHEGADPYQCDICRKTFIRKEDLTRHCLLHTGVKPHKC 332
G PY+C+ C K F + L RH +HTG KP
Sbjct: 6 SGTGEKPYKCNECGKAFSQTSKLARHQRIHTGEKPSGP 43
Score = 48.7 bits (117), Expect = 6e-08
Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Query: 123 HERLHA-EKLYECDICKNRFPSSGAMKKHRRKHTGERPYEC 162
EK Y+C+ C F + + +H+R HTGE+P
Sbjct: 3 SGSSGTGEKPYKCNECGKAFSQTSKLARHQRIHTGEKPSGP 43
Score = 47.9 bits (115), Expect = 1e-07
Identities = 16/43 (37%), Positives = 18/43 (41%)
Query: 319 RHCLLHTGVKPHKCPICTKGFTMKSSLKIHLLTHTKEPPKSCE 361
TG KP+KC C K F+ S L H HT E P
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFSQTSKLARHQRIHTGEKPSGPS 44
Score = 40.2 bits (95), Expect = 6e-05
Identities = 13/42 (30%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 263 HMFHHTGENGHTCELCNKTFNRKARLELHMKYIHEGADPYQC 304
TGE + C C K F++ ++L H + IH G P
Sbjct: 3 SGSSGTGEKPYKCNECGKAFSQTSKLARHQR-IHTGEKPSGP 43
Score = 39.4 bits (93), Expect = 1e-04
Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 5/45 (11%)
Query: 91 HLRAHAGETKRKKKFKCDKCEKQFYGLTLLRIHERLH-AEKLYEC 134
+ GE K +KC++C K F + L H+R+H EK
Sbjct: 3 SGSSGTGE----KPYKCNECGKAFSQTSKLARHQRIHTGEKPSGP 43
Score = 34.0 bits (79), Expect = 0.008
Identities = 12/31 (38%), Positives = 15/31 (48%)
Query: 348 HLLTHTKEPPKSCEVCGRAFIRQDCLIRHLR 378
+ T E P C CG+AF + L RH R
Sbjct: 3 SGSSGTGEKPYKCNECGKAFSQTSKLARHQR 33
Score = 31.3 bits (72), Expect = 0.087
Identities = 10/30 (33%), Positives = 13/30 (43%), Gaps = 4/30 (13%)
Query: 78 CGRVFNRKDNLREHLRAHAGETKRKKKFKC 107
CG+ F++ L H R H GE K
Sbjct: 18 CGKAFSQTSKLARHQRIHTGE----KPSGP 43
>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible
early growth response protein 1, TGFB-inducible early
growth response protein 1; NMR {Homo sapiens}
Length = 72
Score = 61.2 bits (149), Expect = 4e-12
Identities = 25/62 (40%), Positives = 29/62 (46%), Gaps = 5/62 (8%)
Query: 324 HTGVKPHKCPI--CTKGFTMKSSLKIHLLTHTKEPPKSCEV--CGRAFIRQDCLIRHLRQ 379
+ ++ H C C K + S LK H THT E P SC C R F R D L RH R
Sbjct: 12 SSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRR- 70
Query: 380 KH 381
H
Sbjct: 71 TH 72
Score = 60.5 bits (147), Expect = 8e-12
Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 4/70 (5%)
Query: 228 AKETLNRHMKTHSGVKPHVCEY--CEKAFIQASQLKAHMFHHTGENGHTC--ELCNKTFN 283
+ S ++ H+C + C K + ++S LKAH HTGE +C + C + F
Sbjct: 1 GSSGSSGPQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFA 60
Query: 284 RKARLELHMK 293
R L H +
Sbjct: 61 RSDELSRHRR 70
Score = 60.1 bits (146), Expect = 1e-11
Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 4/68 (5%)
Query: 120 LRIHERLHA-EKLYECDI--CKNRFPSSGAMKKHRRKHTGERPYECK-EVCGRVFNRKDN 175
+ + + + C C + S +K H R HTGE+P+ C + C R F R D
Sbjct: 5 SSGPQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDE 64
Query: 176 LREHLRAH 183
L H R H
Sbjct: 65 LSRHRRTH 72
Score = 55.9 bits (135), Expect = 3e-10
Identities = 24/97 (24%), Positives = 36/97 (37%), Gaps = 27/97 (27%)
Query: 144 SGAMKKHRRKHTGERPYECK-EVCGRVFNRKDNLREHLRAHAGETKRKKKFKCDKCEKQF 202
S + + R + C CG+ + + +L+ H R H GE K F C +
Sbjct: 2 SSGSSGPQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGE----KPFSCS-----W 52
Query: 203 YGLTLLRIHERLHGLIERTCYARFAAKETLNRHMKTH 239
G C RFA + L+RH +TH
Sbjct: 53 KG-----------------CERRFARSDELSRHRRTH 72
Score = 54.7 bits (132), Expect = 9e-10
Identities = 18/61 (29%), Positives = 22/61 (36%), Gaps = 4/61 (6%)
Query: 296 HEGADPYQCDI--CRKTFIRKEDLTRHCLLHTGVKPHKC--PICTKGFTMKSSLKIHLLT 351
+ C C KT+ + L H HTG KP C C + F L H T
Sbjct: 12 SSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRT 71
Query: 352 H 352
H
Sbjct: 72 H 72
Score = 45.8 bits (109), Expect = 1e-06
Identities = 18/95 (18%), Positives = 29/95 (30%), Gaps = 28/95 (29%)
Query: 177 REHLRAHAGETKRKKKFKCDK--CEKQFYGLTLLRIHERLHGLIERTCYARFAAKETLNR 234
++ R + C C K + L
Sbjct: 2 SSGSSGPQIDSSRIRSHICSHPGCGK------------------------TYFKSSHLKA 37
Query: 235 HMKTHSGVKPHVCEY--CEKAFIQASQLKAHMFHH 267
H +TH+G KP C + CE+ F ++ +L H H
Sbjct: 38 HTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH 72
Score = 38.9 bits (91), Expect = 3e-04
Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 7/67 (10%)
Query: 63 KSKEEEKQICTYIKVCGRVFNRKDNLREHLRAHAGETKRKKKFKCD--KCEKQFYGLTLL 120
S IC++ CG+ + + +L+ H R H GE K F C CE++F L
Sbjct: 11 DSSRIRSHICSH-PGCGKTYFKSSHLKAHTRTHTGE----KPFSCSWKGCERRFARSDEL 65
Query: 121 RIHERLH 127
H R H
Sbjct: 66 SRHRRTH 72
>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 60.2 bits (147), Expect = 5e-12
Identities = 15/49 (30%), Positives = 19/49 (38%), Gaps = 5/49 (10%)
Query: 149 KHRRKHTGERPYECKEVCGRVFNRKDNLREHLRAHAGETKRKKKFKCDK 197
TG +PY C E CG+ F+ +L H H GE K
Sbjct: 2 SSGSSGTGVKPYMCNE-CGKAFSVYSSLTTHQVIHTGE----KPSGPSS 45
Score = 49.1 bits (118), Expect = 4e-08
Identities = 16/43 (37%), Positives = 20/43 (46%)
Query: 234 RHMKTHSGVKPHVCEYCEKAFIQASQLKAHMFHHTGENGHTCE 276
+ +GVKP++C C KAF S L H HTGE
Sbjct: 2 SSGSSGTGVKPYMCNECGKAFSVYSSLTTHQVIHTGEKPSGPS 44
Score = 48.7 bits (117), Expect = 5e-08
Identities = 11/41 (26%), Positives = 16/41 (39%), Gaps = 1/41 (2%)
Query: 123 HERLHA-EKLYECDICKNRFPSSGAMKKHRRKHTGERPYEC 162
K Y C+ C F ++ H+ HTGE+P
Sbjct: 3 SGSSGTGVKPYMCNECGKAFSVYSSLTTHQVIHTGEKPSGP 43
Score = 48.7 bits (117), Expect = 6e-08
Identities = 17/43 (39%), Positives = 21/43 (48%)
Query: 319 RHCLLHTGVKPHKCPICTKGFTMKSSLKIHLLTHTKEPPKSCE 361
TGVKP+ C C K F++ SSL H + HT E P
Sbjct: 2 SSGSSGTGVKPYMCNECGKAFSVYSSLTTHQVIHTGEKPSGPS 44
Score = 48.3 bits (116), Expect = 8e-08
Identities = 15/38 (39%), Positives = 18/38 (47%)
Query: 295 IHEGADPYQCDICRKTFIRKEDLTRHCLLHTGVKPHKC 332
G PY C+ C K F LT H ++HTG KP
Sbjct: 6 SGTGVKPYMCNECGKAFSVYSSLTTHQVIHTGEKPSGP 43
Score = 39.4 bits (93), Expect = 1e-04
Identities = 12/43 (27%), Positives = 16/43 (37%), Gaps = 1/43 (2%)
Query: 262 AHMFHHTGENGHTCELCNKTFNRKARLELHMKYIHEGADPYQC 304
+ TG + C C K F+ + L H IH G P
Sbjct: 2 SSGSSGTGVKPYMCNECGKAFSVYSSLTTHQV-IHTGEKPSGP 43
Score = 38.7 bits (91), Expect = 2e-04
Identities = 11/45 (24%), Positives = 18/45 (40%), Gaps = 5/45 (11%)
Query: 91 HLRAHAGETKRKKKFKCDKCEKQFYGLTLLRIHERLH-AEKLYEC 134
+ G K + C++C K F + L H+ +H EK
Sbjct: 3 SGSSGTGV----KPYMCNECGKAFSVYSSLTTHQVIHTGEKPSGP 43
Score = 35.6 bits (83), Expect = 0.002
Identities = 9/31 (29%), Positives = 11/31 (35%)
Query: 348 HLLTHTKEPPKSCEVCGRAFIRQDCLIRHLR 378
+ T P C CG+AF L H
Sbjct: 3 SGSSGTGVKPYMCNECGKAFSVYSSLTTHQV 33
Score = 32.1 bits (74), Expect = 0.037
Identities = 9/32 (28%), Positives = 12/32 (37%), Gaps = 4/32 (12%)
Query: 78 CGRVFNRKDNLREHLRAHAGETKRKKKFKCDK 109
CG+ F+ +L H H GE K
Sbjct: 18 CGKAFSVYSSLTTHQVIHTGE----KPSGPSS 45
>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 60.2 bits (147), Expect = 5e-12
Identities = 18/47 (38%), Positives = 22/47 (46%), Gaps = 5/47 (10%)
Query: 149 KHRRKHTGERPYECKEVCGRVFNRKDNLREHLRAHAGETKRKKKFKC 195
TGE+PY C+E CG+ F L+EH R H GE K
Sbjct: 2 SSGSSGTGEKPYNCEE-CGKAFIHDSQLQEHQRIHTGE----KPSGP 43
Score = 51.8 bits (125), Expect = 5e-09
Identities = 18/43 (41%), Positives = 22/43 (51%)
Query: 234 RHMKTHSGVKPHVCEYCEKAFIQASQLKAHMFHHTGENGHTCE 276
+ +G KP+ CE C KAFI SQL+ H HTGE
Sbjct: 2 SSGSSGTGEKPYNCEECGKAFIHDSQLQEHQRIHTGEKPSGPS 44
Score = 48.7 bits (117), Expect = 5e-08
Identities = 13/41 (31%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Query: 123 HERLH-AEKLYECDICKNRFPSSGAMKKHRRKHTGERPYEC 162
EK Y C+ C F +++H+R HTGE+P
Sbjct: 3 SGSSGTGEKPYNCEECGKAFIHDSQLQEHQRIHTGEKPSGP 43
Score = 48.7 bits (117), Expect = 6e-08
Identities = 15/38 (39%), Positives = 17/38 (44%)
Query: 295 IHEGADPYQCDICRKTFIRKEDLTRHCLLHTGVKPHKC 332
G PY C+ C K FI L H +HTG KP
Sbjct: 6 SGTGEKPYNCEECGKAFIHDSQLQEHQRIHTGEKPSGP 43
Score = 48.3 bits (116), Expect = 7e-08
Identities = 15/43 (34%), Positives = 17/43 (39%)
Query: 319 RHCLLHTGVKPHKCPICTKGFTMKSSLKIHLLTHTKEPPKSCE 361
TG KP+ C C K F S L+ H HT E P
Sbjct: 2 SSGSSGTGEKPYNCEECGKAFIHDSQLQEHQRIHTGEKPSGPS 44
Score = 39.8 bits (94), Expect = 7e-05
Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 262 AHMFHHTGENGHTCELCNKTFNRKARLELHMKYIHEGADPYQC 304
+ TGE + CE C K F ++L+ H + IH G P
Sbjct: 2 SSGSSGTGEKPYNCEECGKAFIHDSQLQEHQR-IHTGEKPSGP 43
Score = 38.3 bits (90), Expect = 2e-04
Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 5/45 (11%)
Query: 91 HLRAHAGETKRKKKFKCDKCEKQFYGLTLLRIHERLH-AEKLYEC 134
+ GE K + C++C K F + L+ H+R+H EK
Sbjct: 3 SGSSGTGE----KPYNCEECGKAFIHDSQLQEHQRIHTGEKPSGP 43
Score = 35.2 bits (82), Expect = 0.003
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 348 HLLTHTKEPPKSCEVCGRAFIRQDCLIRHLR 378
+ T E P +CE CG+AFI L H R
Sbjct: 3 SGSSGTGEKPYNCEECGKAFIHDSQLQEHQR 33
Score = 31.0 bits (71), Expect = 0.11
Identities = 11/30 (36%), Positives = 13/30 (43%), Gaps = 4/30 (13%)
Query: 78 CGRVFNRKDNLREHLRAHAGETKRKKKFKC 107
CG+ F L+EH R H GE K
Sbjct: 18 CGKAFIHDSQLQEHQRIHTGE----KPSGP 43
Score = 31.0 bits (71), Expect = 0.12
Identities = 13/70 (18%), Positives = 19/70 (27%), Gaps = 28/70 (40%)
Query: 179 HLRAHAGETKRKKKFKCDKCEKQFYGLTLLRIHERLHGLIERTCYARFAAKETLNRHMKT 238
+ GE K + C++C K F L H +
Sbjct: 3 SGSSGTGE----KPYNCEECGK------------------------AFIHDSQLQEHQRI 34
Query: 239 HSGVKPHVCE 248
H+G KP
Sbjct: 35 HTGEKPSGPS 44
>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 60.2 bits (147), Expect = 5e-12
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 5/47 (10%)
Query: 149 KHRRKHTGERPYECKEVCGRVFNRKDNLREHLRAHAGETKRKKKFKC 195
+GE+P++CKE CG+ F + +L HLR H GE K
Sbjct: 2 SSGSSGSGEKPFKCKE-CGKAFRQNIHLASHLRIHTGE----KPSGP 43
Score = 49.0 bits (118), Expect = 4e-08
Identities = 16/43 (37%), Positives = 20/43 (46%)
Query: 234 RHMKTHSGVKPHVCEYCEKAFIQASQLKAHMFHHTGENGHTCE 276
+ SG KP C+ C KAF Q L +H+ HTGE
Sbjct: 2 SSGSSGSGEKPFKCKECGKAFRQNIHLASHLRIHTGEKPSGPS 44
Score = 49.0 bits (118), Expect = 4e-08
Identities = 13/38 (34%), Positives = 17/38 (44%)
Query: 295 IHEGADPYQCDICRKTFIRKEDLTRHCLLHTGVKPHKC 332
G P++C C K F + L H +HTG KP
Sbjct: 6 SGSGEKPFKCKECGKAFRQNIHLASHLRIHTGEKPSGP 43
Score = 47.1 bits (113), Expect = 2e-07
Identities = 12/41 (29%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Query: 123 HERLH-AEKLYECDICKNRFPSSGAMKKHRRKHTGERPYEC 162
EK ++C C F + + H R HTGE+P
Sbjct: 3 SGSSGSGEKPFKCKECGKAFRQNIHLASHLRIHTGEKPSGP 43
Score = 46.0 bits (110), Expect = 5e-07
Identities = 15/43 (34%), Positives = 16/43 (37%)
Query: 319 RHCLLHTGVKPHKCPICTKGFTMKSSLKIHLLTHTKEPPKSCE 361
+G KP KC C K F L HL HT E P
Sbjct: 2 SSGSSGSGEKPFKCKECGKAFRQNIHLASHLRIHTGEKPSGPS 44
Score = 40.2 bits (95), Expect = 5e-05
Identities = 12/43 (27%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Query: 262 AHMFHHTGENGHTCELCNKTFNRKARLELHMKYIHEGADPYQC 304
+ +GE C+ C K F + L H++ IH G P
Sbjct: 2 SSGSSGSGEKPFKCKECGKAFRQNIHLASHLR-IHTGEKPSGP 43
Score = 37.9 bits (89), Expect = 4e-04
Identities = 15/45 (33%), Positives = 19/45 (42%), Gaps = 5/45 (11%)
Query: 91 HLRAHAGETKRKKKFKCDKCEKQFYGLTLLRIHERLH-AEKLYEC 134
+ +GE K FKC +C K F L H R+H EK
Sbjct: 3 SGSSGSGE----KPFKCKECGKAFRQNIHLASHLRIHTGEKPSGP 43
Score = 34.0 bits (79), Expect = 0.009
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 348 HLLTHTKEPPKSCEVCGRAFIRQDCLIRHLR 378
+ + E P C+ CG+AF + L HLR
Sbjct: 3 SGSSGSGEKPFKCKECGKAFRQNIHLASHLR 33
Score = 31.3 bits (72), Expect = 0.077
Identities = 12/32 (37%), Positives = 15/32 (46%), Gaps = 4/32 (12%)
Query: 76 KVCGRVFNRKDNLREHLRAHAGETKRKKKFKC 107
K CG+ F + +L HLR H GE K
Sbjct: 16 KECGKAFRQNIHLASHLRIHTGE----KPSGP 43
>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 60.2 bits (147), Expect = 5e-12
Identities = 21/46 (45%), Positives = 23/46 (50%), Gaps = 5/46 (10%)
Query: 150 HRRKHTGERPYECKEVCGRVFNRKDNLREHLRAHAGETKRKKKFKC 195
TGE PYEC E CG+ F+RK L H R HAGE K
Sbjct: 3 SGSSGTGENPYECHE-CGKAFSRKYQLISHQRTHAGE----KPSGP 43
Score = 49.0 bits (118), Expect = 4e-08
Identities = 12/41 (29%), Positives = 15/41 (36%), Gaps = 1/41 (2%)
Query: 123 HERLH-AEKLYECDICKNRFPSSGAMKKHRRKHTGERPYEC 162
E YEC C F + H+R H GE+P
Sbjct: 3 SGSSGTGENPYECHECGKAFSRKYQLISHQRTHAGEKPSGP 43
Score = 48.3 bits (116), Expect = 8e-08
Identities = 15/38 (39%), Positives = 17/38 (44%)
Query: 295 IHEGADPYQCDICRKTFIRKEDLTRHCLLHTGVKPHKC 332
G +PY+C C K F RK L H H G KP
Sbjct: 6 SGTGENPYECHECGKAFSRKYQLISHQRTHAGEKPSGP 43
Score = 47.9 bits (115), Expect = 9e-08
Identities = 13/42 (30%), Positives = 18/42 (42%)
Query: 234 RHMKTHSGVKPHVCEYCEKAFIQASQLKAHMFHHTGENGHTC 275
+ +G P+ C C KAF + QL +H H GE
Sbjct: 2 SSGSSGTGENPYECHECGKAFSRKYQLISHQRTHAGEKPSGP 43
Score = 46.7 bits (112), Expect = 3e-07
Identities = 14/42 (33%), Positives = 17/42 (40%)
Query: 319 RHCLLHTGVKPHKCPICTKGFTMKSSLKIHLLTHTKEPPKSC 360
TG P++C C K F+ K L H TH E P
Sbjct: 2 SSGSSGTGENPYECHECGKAFSRKYQLISHQRTHAGEKPSGP 43
Score = 40.2 bits (95), Expect = 5e-05
Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Query: 267 HTGENGHTCELCNKTFNRKARLELHMKYIHEGADPYQC 304
TGEN + C C K F+RK +L H + H G P
Sbjct: 7 GTGENPYECHECGKAFSRKYQLISHQR-THAGEKPSGP 43
Score = 37.5 bits (88), Expect = 5e-04
Identities = 13/45 (28%), Positives = 18/45 (40%), Gaps = 5/45 (11%)
Query: 91 HLRAHAGETKRKKKFKCDKCEKQFYGLTLLRIHERLHA-EKLYEC 134
+ GE ++C +C K F L H+R HA EK
Sbjct: 3 SGSSGTGE----NPYECHECGKAFSRKYQLISHQRTHAGEKPSGP 43
Score = 34.4 bits (80), Expect = 0.006
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 348 HLLTHTKEPPKSCEVCGRAFIRQDCLIRHLR 378
+ T E P C CG+AF R+ LI H R
Sbjct: 3 SGSSGTGENPYECHECGKAFSRKYQLISHQR 33
Score = 31.7 bits (73), Expect = 0.064
Identities = 13/30 (43%), Positives = 15/30 (50%), Gaps = 4/30 (13%)
Query: 78 CGRVFNRKDNLREHLRAHAGETKRKKKFKC 107
CG+ F+RK L H R HAGE K
Sbjct: 18 CGKAFSRKYQLISHQRTHAGE----KPSGP 43
Score = 29.4 bits (67), Expect = 0.34
Identities = 14/69 (20%), Positives = 21/69 (30%), Gaps = 28/69 (40%)
Query: 179 HLRAHAGETKRKKKFKCDKCEKQFYGLTLLRIHERLHGLIERTCYARFAAKETLNRHMKT 238
+ GE ++C +C K F+ K L H +T
Sbjct: 3 SGSSGTGE----NPYECHECGK------------------------AFSRKYQLISHQRT 34
Query: 239 HSGVKPHVC 247
H+G KP
Sbjct: 35 HAGEKPSGP 43
>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 60.2 bits (147), Expect = 5e-12
Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 5/48 (10%)
Query: 150 HRRKHTGERPYECKEVCGRVFNRKDNLREHLRAHAGETKRKKKFKCDK 197
TGE+PYEC C + F+ +L +H R H+GE K
Sbjct: 3 SGSSGTGEKPYECDV-CRKAFSHHASLTQHQRVHSGE----KPSGPSS 45
Score = 51.4 bits (124), Expect = 7e-09
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 122 IHERLHA-EKLYECDICKNRFPSSGAMKKHRRKHTGERPYEC 162
EK YECD+C+ F ++ +H+R H+GE+P
Sbjct: 2 SSGSSGTGEKPYECDVCRKAFSHHASLTQHQRVHSGEKPSGP 43
Score = 48.7 bits (117), Expect = 5e-08
Identities = 16/38 (42%), Positives = 21/38 (55%)
Query: 295 IHEGADPYQCDICRKTFIRKEDLTRHCLLHTGVKPHKC 332
G PY+CD+CRK F LT+H +H+G KP
Sbjct: 6 SGTGEKPYECDVCRKAFSHHASLTQHQRVHSGEKPSGP 43
Score = 47.1 bits (113), Expect = 2e-07
Identities = 13/42 (30%), Positives = 19/42 (45%)
Query: 235 HMKTHSGVKPHVCEYCEKAFIQASQLKAHMFHHTGENGHTCE 276
+ +G KP+ C+ C KAF + L H H+GE
Sbjct: 3 SGSSGTGEKPYECDVCRKAFSHHASLTQHQRVHSGEKPSGPS 44
Score = 45.6 bits (109), Expect = 8e-07
Identities = 14/42 (33%), Positives = 20/42 (47%)
Query: 320 HCLLHTGVKPHKCPICTKGFTMKSSLKIHLLTHTKEPPKSCE 361
TG KP++C +C K F+ +SL H H+ E P
Sbjct: 3 SGSSGTGEKPYECDVCRKAFSHHASLTQHQRVHSGEKPSGPS 44
Score = 39.4 bits (93), Expect = 1e-04
Identities = 13/42 (30%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 263 HMFHHTGENGHTCELCNKTFNRKARLELHMKYIHEGADPYQC 304
TGE + C++C K F+ A L H + +H G P
Sbjct: 3 SGSSGTGEKPYECDVCRKAFSHHASLTQHQR-VHSGEKPSGP 43
Score = 38.6 bits (91), Expect = 2e-04
Identities = 14/45 (31%), Positives = 19/45 (42%), Gaps = 5/45 (11%)
Query: 91 HLRAHAGETKRKKKFKCDKCEKQFYGLTLLRIHERLH-AEKLYEC 134
+ GE K ++CD C K F L H+R+H EK
Sbjct: 3 SGSSGTGE----KPYECDVCRKAFSHHASLTQHQRVHSGEKPSGP 43
Score = 34.8 bits (81), Expect = 0.004
Identities = 11/32 (34%), Positives = 15/32 (46%)
Query: 347 IHLLTHTKEPPKSCEVCGRAFIRQDCLIRHLR 378
+ T E P C+VC +AF L +H R
Sbjct: 2 SSGSSGTGEKPYECDVCRKAFSHHASLTQHQR 33
Score = 31.7 bits (73), Expect = 0.067
Identities = 10/34 (29%), Positives = 15/34 (44%), Gaps = 4/34 (11%)
Query: 76 KVCGRVFNRKDNLREHLRAHAGETKRKKKFKCDK 109
VC + F+ +L +H R H+GE K
Sbjct: 16 DVCRKAFSHHASLTQHQRVHSGE----KPSGPSS 45
Score = 30.9 bits (71), Expect = 0.11
Identities = 15/70 (21%), Positives = 22/70 (31%), Gaps = 28/70 (40%)
Query: 179 HLRAHAGETKRKKKFKCDKCEKQFYGLTLLRIHERLHGLIERTCYARFAAKETLNRHMKT 238
+ GE K ++CD C K F + +L +H +
Sbjct: 3 SGSSGTGE----KPYECDVCRKAF------------------------SHHASLTQHQRV 34
Query: 239 HSGVKPHVCE 248
HSG KP
Sbjct: 35 HSGEKPSGPS 44
>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 60.3 bits (147), Expect = 5e-12
Identities = 14/48 (29%), Positives = 21/48 (43%), Gaps = 5/48 (10%)
Query: 150 HRRKHTGERPYECKEVCGRVFNRKDNLREHLRAHAGETKRKKKFKCDK 197
TGE+PY+C E CG+ F + +H R H G+ +
Sbjct: 3 SGSSGTGEKPYKCME-CGKAFGDNSSCTQHQRLHTGQ----RPSGPSS 45
Score = 49.5 bits (119), Expect = 3e-08
Identities = 13/41 (31%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Query: 123 HERLHA-EKLYECDICKNRFPSSGAMKKHRRKHTGERPYEC 162
EK Y+C C F + + +H+R HTG+RP
Sbjct: 3 SGSSGTGEKPYKCMECGKAFGDNSSCTQHQRLHTGQRPSGP 43
Score = 48.3 bits (116), Expect = 8e-08
Identities = 14/38 (36%), Positives = 17/38 (44%)
Query: 295 IHEGADPYQCDICRKTFIRKEDLTRHCLLHTGVKPHKC 332
G PY+C C K F T+H LHTG +P
Sbjct: 6 SGTGEKPYKCMECGKAFGDNSSCTQHQRLHTGQRPSGP 43
Score = 46.8 bits (112), Expect = 3e-07
Identities = 13/42 (30%), Positives = 17/42 (40%)
Query: 235 HMKTHSGVKPHVCEYCEKAFIQASQLKAHMFHHTGENGHTCE 276
+ +G KP+ C C KAF S H HTG+
Sbjct: 3 SGSSGTGEKPYKCMECGKAFGDNSSCTQHQRLHTGQRPSGPS 44
Score = 46.4 bits (111), Expect = 4e-07
Identities = 15/42 (35%), Positives = 17/42 (40%)
Query: 320 HCLLHTGVKPHKCPICTKGFTMKSSLKIHLLTHTKEPPKSCE 361
TG KP+KC C K F SS H HT + P
Sbjct: 3 SGSSGTGEKPYKCMECGKAFGDNSSCTQHQRLHTGQRPSGPS 44
Score = 39.9 bits (94), Expect = 8e-05
Identities = 11/43 (25%), Positives = 16/43 (37%), Gaps = 1/43 (2%)
Query: 262 AHMFHHTGENGHTCELCNKTFNRKARLELHMKYIHEGADPYQC 304
+ TGE + C C K F + H + +H G P
Sbjct: 2 SSGSSGTGEKPYKCMECGKAFGDNSSCTQHQR-LHTGQRPSGP 43
Score = 34.5 bits (80), Expect = 0.006
Identities = 10/31 (32%), Positives = 13/31 (41%)
Query: 348 HLLTHTKEPPKSCEVCGRAFIRQDCLIRHLR 378
+ T E P C CG+AF +H R
Sbjct: 3 SGSSGTGEKPYKCMECGKAFGDNSSCTQHQR 33
Score = 31.8 bits (73), Expect = 0.047
Identities = 7/32 (21%), Positives = 12/32 (37%), Gaps = 4/32 (12%)
Query: 78 CGRVFNRKDNLREHLRAHAGETKRKKKFKCDK 109
CG+ F + +H R H G+ +
Sbjct: 18 CGKAFGDNSSCTQHQRLHTGQ----RPSGPSS 45
Score = 31.0 bits (71), Expect = 0.12
Identities = 12/70 (17%), Positives = 20/70 (28%), Gaps = 28/70 (40%)
Query: 179 HLRAHAGETKRKKKFKCDKCEKQFYGLTLLRIHERLHGLIERTCYARFAAKETLNRHMKT 238
+ GE K +KC +C K F + +H +
Sbjct: 3 SGSSGTGE----KPYKCMECGKAF------------------------GDNSSCTQHQRL 34
Query: 239 HSGVKPHVCE 248
H+G +P
Sbjct: 35 HTGQRPSGPS 44
>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 60.2 bits (147), Expect = 5e-12
Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 5/47 (10%)
Query: 149 KHRRKHTGERPYECKEVCGRVFNRKDNLREHLRAHAGETKRKKKFKC 195
TGE+PY+C E CG+VF + +L H R H G K
Sbjct: 2 SSGSSGTGEKPYKCNE-CGKVFTQNSHLANHQRIHTGV----KPSGP 43
Score = 49.4 bits (119), Expect = 3e-08
Identities = 15/38 (39%), Positives = 19/38 (50%)
Query: 295 IHEGADPYQCDICRKTFIRKEDLTRHCLLHTGVKPHKC 332
G PY+C+ C K F + L H +HTGVKP
Sbjct: 6 SGTGEKPYKCNECGKVFTQNSHLANHQRIHTGVKPSGP 43
Score = 48.3 bits (116), Expect = 8e-08
Identities = 12/41 (29%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Query: 123 HERLH-AEKLYECDICKNRFPSSGAMKKHRRKHTGERPYEC 162
EK Y+C+ C F + + H+R HTG +P
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLANHQRIHTGVKPSGP 43
Score = 47.5 bits (114), Expect = 1e-07
Identities = 14/43 (32%), Positives = 17/43 (39%)
Query: 234 RHMKTHSGVKPHVCEYCEKAFIQASQLKAHMFHHTGENGHTCE 276
+ +G KP+ C C K F Q S L H HTG
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLANHQRIHTGVKPSGPS 44
Score = 46.7 bits (112), Expect = 3e-07
Identities = 16/43 (37%), Positives = 17/43 (39%)
Query: 319 RHCLLHTGVKPHKCPICTKGFTMKSSLKIHLLTHTKEPPKSCE 361
TG KP+KC C K FT S L H HT P
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLANHQRIHTGVKPSGPS 44
Score = 40.6 bits (96), Expect = 4e-05
Identities = 13/43 (30%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Query: 262 AHMFHHTGENGHTCELCNKTFNRKARLELHMKYIHEGADPYQC 304
+ TGE + C C K F + + L H + IH G P
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLANHQR-IHTGVKPSGP 43
Score = 39.0 bits (92), Expect = 2e-04
Identities = 13/45 (28%), Positives = 20/45 (44%), Gaps = 5/45 (11%)
Query: 91 HLRAHAGETKRKKKFKCDKCEKQFYGLTLLRIHERLH-AEKLYEC 134
+ GE K +KC++C K F + L H+R+H K
Sbjct: 3 SGSSGTGE----KPYKCNECGKVFTQNSHLANHQRIHTGVKPSGP 43
Score = 32.9 bits (76), Expect = 0.021
Identities = 10/31 (32%), Positives = 13/31 (41%)
Query: 348 HLLTHTKEPPKSCEVCGRAFIRQDCLIRHLR 378
+ T E P C CG+ F + L H R
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLANHQR 33
Score = 31.3 bits (72), Expect = 0.091
Identities = 10/30 (33%), Positives = 13/30 (43%), Gaps = 4/30 (13%)
Query: 78 CGRVFNRKDNLREHLRAHAGETKRKKKFKC 107
CG+VF + +L H R H G K
Sbjct: 18 CGKVFTQNSHLANHQRIHTGV----KPSGP 43
>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 60.2 bits (147), Expect = 5e-12
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 5/47 (10%)
Query: 149 KHRRKHTGERPYECKEVCGRVFNRKDNLREHLRAHAGETKRKKKFKC 195
TGE+PY+C + CG+ F RK L H ++H GE +
Sbjct: 2 SSGSSGTGEKPYKCSD-CGKAFTRKSGLHIHQQSHTGE----RHSGP 43
Score = 51.4 bits (124), Expect = 6e-09
Identities = 18/42 (42%), Positives = 20/42 (47%)
Query: 319 RHCLLHTGVKPHKCPICTKGFTMKSSLKIHLLTHTKEPPKSC 360
TG KP+KC C K FT KS L IH +HT E
Sbjct: 2 SSGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQSHTGERHSGP 43
Score = 49.4 bits (119), Expect = 3e-08
Identities = 15/42 (35%), Positives = 19/42 (45%)
Query: 234 RHMKTHSGVKPHVCEYCEKAFIQASQLKAHMFHHTGENGHTC 275
+ +G KP+ C C KAF + S L H HTGE
Sbjct: 2 SSGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQSHTGERHSGP 43
Score = 49.0 bits (118), Expect = 4e-08
Identities = 12/41 (29%), Positives = 16/41 (39%), Gaps = 1/41 (2%)
Query: 123 HERLH-AEKLYECDICKNRFPSSGAMKKHRRKHTGERPYEC 162
EK Y+C C F + H++ HTGER
Sbjct: 3 SGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQSHTGERHSGP 43
Score = 48.3 bits (116), Expect = 9e-08
Identities = 14/38 (36%), Positives = 16/38 (42%)
Query: 295 IHEGADPYQCDICRKTFIRKEDLTRHCLLHTGVKPHKC 332
G PY+C C K F RK L H HTG +
Sbjct: 6 SGTGEKPYKCSDCGKAFTRKSGLHIHQQSHTGERHSGP 43
Score = 39.8 bits (94), Expect = 7e-05
Identities = 13/38 (34%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Query: 267 HTGENGHTCELCNKTFNRKARLELHMKYIHEGADPYQC 304
TGE + C C K F RK+ L +H + H G
Sbjct: 7 GTGEKPYKCSDCGKAFTRKSGLHIHQQ-SHTGERHSGP 43
Score = 33.6 bits (78), Expect = 0.012
Identities = 11/31 (35%), Positives = 15/31 (48%)
Query: 348 HLLTHTKEPPKSCEVCGRAFIRQDCLIRHLR 378
+ T E P C CG+AF R+ L H +
Sbjct: 3 SGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQ 33
Score = 32.1 bits (74), Expect = 0.046
Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 4/30 (13%)
Query: 78 CGRVFNRKDNLREHLRAHAGETKRKKKFKC 107
CG+ F RK L H ++H GE +
Sbjct: 18 CGKAFTRKSGLHIHQQSHTGE----RHSGP 43
>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2eoi_A
Length = 46
Score = 60.2 bits (147), Expect = 5e-12
Identities = 17/47 (36%), Positives = 21/47 (44%), Gaps = 5/47 (10%)
Query: 149 KHRRKHTGERPYECKEVCGRVFNRKDNLREHLRAHAGETKRKKKFKC 195
TGE+P+EC E CG+ F+ L H R H GE K
Sbjct: 2 SSGSSGTGEKPFECAE-CGKSFSISSQLATHQRIHTGE----KPSGP 43
Score = 50.2 bits (121), Expect = 2e-08
Identities = 14/41 (34%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Query: 123 HERLHA-EKLYECDICKNRFPSSGAMKKHRRKHTGERPYEC 162
EK +EC C F S + H+R HTGE+P
Sbjct: 3 SGSSGTGEKPFECAECGKSFSISSQLATHQRIHTGEKPSGP 43
Score = 49.4 bits (119), Expect = 3e-08
Identities = 15/43 (34%), Positives = 19/43 (44%)
Query: 234 RHMKTHSGVKPHVCEYCEKAFIQASQLKAHMFHHTGENGHTCE 276
+ +G KP C C K+F +SQL H HTGE
Sbjct: 2 SSGSSGTGEKPFECAECGKSFSISSQLATHQRIHTGEKPSGPS 44
Score = 49.0 bits (118), Expect = 4e-08
Identities = 15/43 (34%), Positives = 18/43 (41%)
Query: 319 RHCLLHTGVKPHKCPICTKGFTMKSSLKIHLLTHTKEPPKSCE 361
TG KP +C C K F++ S L H HT E P
Sbjct: 2 SSGSSGTGEKPFECAECGKSFSISSQLATHQRIHTGEKPSGPS 44
Score = 48.7 bits (117), Expect = 5e-08
Identities = 13/38 (34%), Positives = 17/38 (44%)
Query: 295 IHEGADPYQCDICRKTFIRKEDLTRHCLLHTGVKPHKC 332
G P++C C K+F L H +HTG KP
Sbjct: 6 SGTGEKPFECAECGKSFSISSQLATHQRIHTGEKPSGP 43
Score = 39.8 bits (94), Expect = 7e-05
Identities = 13/38 (34%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Query: 267 HTGENGHTCELCNKTFNRKARLELHMKYIHEGADPYQC 304
TGE C C K+F+ ++L H + IH G P
Sbjct: 7 GTGEKPFECAECGKSFSISSQLATHQR-IHTGEKPSGP 43
Score = 38.6 bits (91), Expect = 2e-04
Identities = 14/45 (31%), Positives = 20/45 (44%), Gaps = 5/45 (11%)
Query: 91 HLRAHAGETKRKKKFKCDKCEKQFYGLTLLRIHERLH-AEKLYEC 134
+ GE K F+C +C K F + L H+R+H EK
Sbjct: 3 SGSSGTGE----KPFECAECGKSFSISSQLATHQRIHTGEKPSGP 43
Score = 33.6 bits (78), Expect = 0.012
Identities = 10/31 (32%), Positives = 13/31 (41%)
Query: 348 HLLTHTKEPPKSCEVCGRAFIRQDCLIRHLR 378
+ T E P C CG++F L H R
Sbjct: 3 SGSSGTGEKPFECAECGKSFSISSQLATHQR 33
Score = 30.5 bits (70), Expect = 0.17
Identities = 14/70 (20%), Positives = 20/70 (28%), Gaps = 28/70 (40%)
Query: 179 HLRAHAGETKRKKKFKCDKCEKQFYGLTLLRIHERLHGLIERTCYARFAAKETLNRHMKT 238
+ GE K F+C +C K F+ L H +
Sbjct: 3 SGSSGTGE----KPFECAECGK------------------------SFSISSQLATHQRI 34
Query: 239 HSGVKPHVCE 248
H+G KP
Sbjct: 35 HTGEKPSGPS 44
Score = 29.8 bits (68), Expect = 0.25
Identities = 10/30 (33%), Positives = 12/30 (40%), Gaps = 4/30 (13%)
Query: 78 CGRVFNRKDNLREHLRAHAGETKRKKKFKC 107
CG+ F+ L H R H GE K
Sbjct: 18 CGKSFSISSQLATHQRIHTGE----KPSGP 43
>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 59.9 bits (146), Expect = 6e-12
Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 5/48 (10%)
Query: 150 HRRKHTGERPYECKEVCGRVFNRKDNLREHLRAHAGETKRKKKFKCDK 197
TGE+PY+C + CG+ F K LR H + H GE +
Sbjct: 3 SGSSGTGEKPYKCSD-CGKSFTWKSRLRIHQKCHTGE----RHSGPSS 45
Score = 51.4 bits (124), Expect = 7e-09
Identities = 18/41 (43%), Positives = 20/41 (48%)
Query: 320 HCLLHTGVKPHKCPICTKGFTMKSSLKIHLLTHTKEPPKSC 360
TG KP+KC C K FT KS L+IH HT E
Sbjct: 3 SGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKCHTGERHSGP 43
Score = 49.8 bits (120), Expect = 2e-08
Identities = 12/41 (29%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Query: 123 HERLH-AEKLYECDICKNRFPSSGAMKKHRRKHTGERPYEC 162
EK Y+C C F ++ H++ HTGER
Sbjct: 3 SGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKCHTGERHSGP 43
Score = 49.8 bits (120), Expect = 2e-08
Identities = 14/41 (34%), Positives = 20/41 (48%)
Query: 235 HMKTHSGVKPHVCEYCEKAFIQASQLKAHMFHHTGENGHTC 275
+ +G KP+ C C K+F S+L+ H HTGE
Sbjct: 3 SGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKCHTGERHSGP 43
Score = 49.1 bits (118), Expect = 5e-08
Identities = 13/38 (34%), Positives = 16/38 (42%)
Query: 295 IHEGADPYQCDICRKTFIRKEDLTRHCLLHTGVKPHKC 332
G PY+C C K+F K L H HTG +
Sbjct: 6 SGTGEKPYKCSDCGKSFTWKSRLRIHQKCHTGERHSGP 43
Score = 41.0 bits (97), Expect = 3e-05
Identities = 14/43 (32%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Query: 262 AHMFHHTGENGHTCELCNKTFNRKARLELHMKYIHEGADPYQC 304
+ TGE + C C K+F K+RL +H K H G
Sbjct: 2 SSGSSGTGEKPYKCSDCGKSFTWKSRLRIHQK-CHTGERHSGP 43
Score = 41.0 bits (97), Expect = 3e-05
Identities = 14/45 (31%), Positives = 20/45 (44%), Gaps = 5/45 (11%)
Query: 91 HLRAHAGETKRKKKFKCDKCEKQFYGLTLLRIHERLH-AEKLYEC 134
+ GE K +KC C K F + LRIH++ H E+
Sbjct: 3 SGSSGTGE----KPYKCSDCGKSFTWKSRLRIHQKCHTGERHSGP 43
Score = 32.9 bits (76), Expect = 0.020
Identities = 10/32 (31%), Positives = 13/32 (40%), Gaps = 4/32 (12%)
Query: 78 CGRVFNRKDNLREHLRAHAGETKRKKKFKCDK 109
CG+ F K LR H + H GE +
Sbjct: 18 CGKSFTWKSRLRIHQKCHTGE----RHSGPSS 45
Score = 32.9 bits (76), Expect = 0.021
Identities = 9/31 (29%), Positives = 14/31 (45%)
Query: 348 HLLTHTKEPPKSCEVCGRAFIRQDCLIRHLR 378
+ T E P C CG++F + L H +
Sbjct: 3 SGSSGTGEKPYKCSDCGKSFTWKSRLRIHQK 33
>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 59.9 bits (146), Expect = 6e-12
Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 5/47 (10%)
Query: 149 KHRRKHTGERPYECKEVCGRVFNRKDNLREHLRAHAGETKRKKKFKC 195
TG +PY+C E CG+ F++ L H R H GE K
Sbjct: 2 SSGSSGTGGKPYQCNE-CGKAFSQTSKLARHQRVHTGE----KPSGP 43
Score = 50.2 bits (121), Expect = 2e-08
Identities = 12/42 (28%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 122 IHERLH-AEKLYECDICKNRFPSSGAMKKHRRKHTGERPYEC 162
K Y+C+ C F + + +H+R HTGE+P
Sbjct: 2 SSGSSGTGGKPYQCNECGKAFSQTSKLARHQRVHTGEKPSGP 43
Score = 49.5 bits (119), Expect = 3e-08
Identities = 16/38 (42%), Positives = 19/38 (50%)
Query: 295 IHEGADPYQCDICRKTFIRKEDLTRHCLLHTGVKPHKC 332
G PYQC+ C K F + L RH +HTG KP
Sbjct: 6 SGTGGKPYQCNECGKAFSQTSKLARHQRVHTGEKPSGP 43
Score = 46.8 bits (112), Expect = 3e-07
Identities = 16/42 (38%), Positives = 20/42 (47%)
Query: 235 HMKTHSGVKPHVCEYCEKAFIQASQLKAHMFHHTGENGHTCE 276
+ +G KP+ C C KAF Q S+L H HTGE
Sbjct: 3 SGSSGTGGKPYQCNECGKAFSQTSKLARHQRVHTGEKPSGPS 44
Score = 45.2 bits (108), Expect = 1e-06
Identities = 15/42 (35%), Positives = 18/42 (42%)
Query: 320 HCLLHTGVKPHKCPICTKGFTMKSSLKIHLLTHTKEPPKSCE 361
TG KP++C C K F+ S L H HT E P
Sbjct: 3 SGSSGTGGKPYQCNECGKAFSQTSKLARHQRVHTGEKPSGPS 44
Score = 40.2 bits (95), Expect = 6e-05
Identities = 11/43 (25%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Query: 262 AHMFHHTGENGHTCELCNKTFNRKARLELHMKYIHEGADPYQC 304
+ TG + C C K F++ ++L H + +H G P
Sbjct: 2 SSGSSGTGGKPYQCNECGKAFSQTSKLARHQR-VHTGEKPSGP 43
Score = 38.7 bits (91), Expect = 2e-04
Identities = 12/45 (26%), Positives = 20/45 (44%), Gaps = 5/45 (11%)
Query: 91 HLRAHAGETKRKKKFKCDKCEKQFYGLTLLRIHERLH-AEKLYEC 134
+ G K ++C++C K F + L H+R+H EK
Sbjct: 3 SGSSGTGG----KPYQCNECGKAFSQTSKLARHQRVHTGEKPSGP 43
Score = 35.2 bits (82), Expect = 0.003
Identities = 11/32 (34%), Positives = 14/32 (43%)
Query: 347 IHLLTHTKEPPKSCEVCGRAFIRQDCLIRHLR 378
+ T P C CG+AF + L RH R
Sbjct: 2 SSGSSGTGGKPYQCNECGKAFSQTSKLARHQR 33
Score = 30.6 bits (70), Expect = 0.16
Identities = 10/30 (33%), Positives = 13/30 (43%), Gaps = 4/30 (13%)
Query: 78 CGRVFNRKDNLREHLRAHAGETKRKKKFKC 107
CG+ F++ L H R H GE K
Sbjct: 18 CGKAFSQTSKLARHQRVHTGE----KPSGP 43
>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 59.9 bits (146), Expect = 6e-12
Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 5/49 (10%)
Query: 149 KHRRKHTGERPYECKEVCGRVFNRKDNLREHLRAHAGETKRKKKFKCDK 197
TGE+PYEC + CG+ F+ + +L H H G+ K
Sbjct: 2 SSGSSGTGEKPYECNQ-CGKAFSVRSSLTTHQAIHTGK----KPSGPSS 45
Score = 49.8 bits (120), Expect = 2e-08
Identities = 12/42 (28%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 123 HERLH-AEKLYECDICKNRFPSSGAMKKHRRKHTGERPYECK 163
EK YEC+ C F ++ H+ HTG++P
Sbjct: 3 SGSSGTGEKPYECNQCGKAFSVRSSLTTHQAIHTGKKPSGPS 44
Score = 48.3 bits (116), Expect = 8e-08
Identities = 15/38 (39%), Positives = 19/38 (50%)
Query: 295 IHEGADPYQCDICRKTFIRKEDLTRHCLLHTGVKPHKC 332
G PY+C+ C K F + LT H +HTG KP
Sbjct: 6 SGTGEKPYECNQCGKAFSVRSSLTTHQAIHTGKKPSGP 43
Score = 47.9 bits (115), Expect = 1e-07
Identities = 15/43 (34%), Positives = 21/43 (48%)
Query: 319 RHCLLHTGVKPHKCPICTKGFTMKSSLKIHLLTHTKEPPKSCE 361
TG KP++C C K F+++SSL H HT + P
Sbjct: 2 SSGSSGTGEKPYECNQCGKAFSVRSSLTTHQAIHTGKKPSGPS 44
Score = 47.5 bits (114), Expect = 1e-07
Identities = 14/43 (32%), Positives = 18/43 (41%)
Query: 234 RHMKTHSGVKPHVCEYCEKAFIQASQLKAHMFHHTGENGHTCE 276
+ +G KP+ C C KAF S L H HTG+
Sbjct: 2 SSGSSGTGEKPYECNQCGKAFSVRSSLTTHQAIHTGKKPSGPS 44
Score = 38.7 bits (91), Expect = 2e-04
Identities = 13/42 (30%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Query: 263 HMFHHTGENGHTCELCNKTFNRKARLELHMKYIHEGADPYQC 304
TGE + C C K F+ ++ L H IH G P
Sbjct: 3 SGSSGTGEKPYECNQCGKAFSVRSSLTTHQA-IHTGKKPSGP 43
Score = 38.3 bits (90), Expect = 3e-04
Identities = 11/45 (24%), Positives = 20/45 (44%), Gaps = 5/45 (11%)
Query: 91 HLRAHAGETKRKKKFKCDKCEKQFYGLTLLRIHERLH-AEKLYEC 134
+ GE K ++C++C K F + L H+ +H +K
Sbjct: 3 SGSSGTGE----KPYECNQCGKAFSVRSSLTTHQAIHTGKKPSGP 43
Score = 32.5 bits (75), Expect = 0.029
Identities = 10/31 (32%), Positives = 13/31 (41%)
Query: 348 HLLTHTKEPPKSCEVCGRAFIRQDCLIRHLR 378
+ T E P C CG+AF + L H
Sbjct: 3 SGSSGTGEKPYECNQCGKAFSVRSSLTTHQA 33
Score = 31.0 bits (71), Expect = 0.11
Identities = 8/32 (25%), Positives = 13/32 (40%), Gaps = 4/32 (12%)
Query: 78 CGRVFNRKDNLREHLRAHAGETKRKKKFKCDK 109
CG+ F+ + +L H H G+ K
Sbjct: 18 CGKAFSVRSSLTTHQAIHTGK----KPSGPSS 45
Score = 30.2 bits (69), Expect = 0.22
Identities = 13/70 (18%), Positives = 22/70 (31%), Gaps = 28/70 (40%)
Query: 179 HLRAHAGETKRKKKFKCDKCEKQFYGLTLLRIHERLHGLIERTCYARFAAKETLNRHMKT 238
+ GE K ++C++C K F + + +L H
Sbjct: 3 SGSSGTGE----KPYECNQCGKAF------------------------SVRSSLTTHQAI 34
Query: 239 HSGVKPHVCE 248
H+G KP
Sbjct: 35 HTGKKPSGPS 44
>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 59.9 bits (146), Expect = 6e-12
Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 5/47 (10%)
Query: 149 KHRRKHTGERPYECKEVCGRVFNRKDNLREHLRAHAGETKRKKKFKC 195
TGE+PYECK C + F +K +L +H + H GE K
Sbjct: 2 SSGSSGTGEKPYECKV-CSKAFTQKAHLAQHQKTHTGE----KPSGP 43
Score = 52.9 bits (128), Expect = 2e-09
Identities = 13/43 (30%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Query: 123 HERLH-AEKLYECDICKNRFPSSGAMKKHRRKHTGERPYECKE 164
EK YEC +C F + +H++ HTGE+P
Sbjct: 3 SGSSGTGEKPYECKVCSKAFTQKAHLAQHQKTHTGEKPSGPSS 45
Score = 49.5 bits (119), Expect = 3e-08
Identities = 15/43 (34%), Positives = 20/43 (46%)
Query: 234 RHMKTHSGVKPHVCEYCEKAFIQASQLKAHMFHHTGENGHTCE 276
+ +G KP+ C+ C KAF Q + L H HTGE
Sbjct: 2 SSGSSGTGEKPYECKVCSKAFTQKAHLAQHQKTHTGEKPSGPS 44
Score = 49.1 bits (118), Expect = 4e-08
Identities = 15/38 (39%), Positives = 19/38 (50%)
Query: 295 IHEGADPYQCDICRKTFIRKEDLTRHCLLHTGVKPHKC 332
G PY+C +C K F +K L +H HTG KP
Sbjct: 6 SGTGEKPYECKVCSKAFTQKAHLAQHQKTHTGEKPSGP 43
Score = 47.5 bits (114), Expect = 2e-07
Identities = 17/43 (39%), Positives = 22/43 (51%)
Query: 319 RHCLLHTGVKPHKCPICTKGFTMKSSLKIHLLTHTKEPPKSCE 361
TG KP++C +C+K FT K+ L H THT E P
Sbjct: 2 SSGSSGTGEKPYECKVCSKAFTQKAHLAQHQKTHTGEKPSGPS 44
Score = 40.2 bits (95), Expect = 6e-05
Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Query: 262 AHMFHHTGENGHTCELCNKTFNRKARLELHMKYIHEGADPYQC 304
+ TGE + C++C+K F +KA L H K H G P
Sbjct: 2 SSGSSGTGEKPYECKVCSKAFTQKAHLAQHQK-THTGEKPSGP 43
Score = 33.7 bits (78), Expect = 0.013
Identities = 10/31 (32%), Positives = 17/31 (54%)
Query: 348 HLLTHTKEPPKSCEVCGRAFIRQDCLIRHLR 378
+ T E P C+VC +AF ++ L +H +
Sbjct: 3 SGSSGTGEKPYECKVCSKAFTQKAHLAQHQK 33
Score = 31.0 bits (71), Expect = 0.12
Identities = 11/32 (34%), Positives = 16/32 (50%), Gaps = 4/32 (12%)
Query: 76 KVCGRVFNRKDNLREHLRAHAGETKRKKKFKC 107
KVC + F +K +L +H + H GE K
Sbjct: 16 KVCSKAFTQKAHLAQHQKTHTGE----KPSGP 43
>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 59.9 bits (146), Expect = 7e-12
Identities = 16/49 (32%), Positives = 21/49 (42%), Gaps = 5/49 (10%)
Query: 149 KHRRKHTGERPYECKEVCGRVFNRKDNLREHLRAHAGETKRKKKFKCDK 197
TGE+P+EC+E CG+ F+ L H R H GE
Sbjct: 2 SSGSSGTGEKPHECRE-CGKSFSFNSQLIVHQRIHTGE----NPSGPSS 45
Score = 51.0 bits (123), Expect = 9e-09
Identities = 17/42 (40%), Positives = 20/42 (47%)
Query: 234 RHMKTHSGVKPHVCEYCEKAFIQASQLKAHMFHHTGENGHTC 275
+ +G KPH C C K+F SQL H HTGEN
Sbjct: 2 SSGSSGTGEKPHECRECGKSFSFNSQLIVHQRIHTGENPSGP 43
Score = 48.7 bits (117), Expect = 5e-08
Identities = 13/41 (31%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Query: 123 HERLH-AEKLYECDICKNRFPSSGAMKKHRRKHTGERPYEC 162
EK +EC C F + + H+R HTGE P
Sbjct: 3 SGSSGTGEKPHECRECGKSFSFNSQLIVHQRIHTGENPSGP 43
Score = 48.3 bits (116), Expect = 7e-08
Identities = 16/42 (38%), Positives = 19/42 (45%)
Query: 319 RHCLLHTGVKPHKCPICTKGFTMKSSLKIHLLTHTKEPPKSC 360
TG KPH+C C K F+ S L +H HT E P
Sbjct: 2 SSGSSGTGEKPHECRECGKSFSFNSQLIVHQRIHTGENPSGP 43
Score = 46.8 bits (112), Expect = 3e-07
Identities = 12/38 (31%), Positives = 16/38 (42%)
Query: 295 IHEGADPYQCDICRKTFIRKEDLTRHCLLHTGVKPHKC 332
G P++C C K+F L H +HTG P
Sbjct: 6 SGTGEKPHECRECGKSFSFNSQLIVHQRIHTGENPSGP 43
Score = 40.2 bits (95), Expect = 6e-05
Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 263 HMFHHTGENGHTCELCNKTFNRKARLELHMKYIHEGADPYQC 304
TGE H C C K+F+ ++L +H + IH G +P
Sbjct: 3 SGSSGTGEKPHECRECGKSFSFNSQLIVHQR-IHTGENPSGP 43
Score = 38.3 bits (90), Expect = 3e-04
Identities = 12/45 (26%), Positives = 19/45 (42%), Gaps = 5/45 (11%)
Query: 91 HLRAHAGETKRKKKFKCDKCEKQFYGLTLLRIHERLH-AEKLYEC 134
+ GE K +C +C K F + L +H+R+H E
Sbjct: 3 SGSSGTGE----KPHECRECGKSFSFNSQLIVHQRIHTGENPSGP 43
Score = 33.3 bits (77), Expect = 0.018
Identities = 11/31 (35%), Positives = 14/31 (45%)
Query: 348 HLLTHTKEPPKSCEVCGRAFIRQDCLIRHLR 378
+ T E P C CG++F LI H R
Sbjct: 3 SGSSGTGEKPHECRECGKSFSFNSQLIVHQR 33
Score = 29.8 bits (68), Expect = 0.28
Identities = 9/32 (28%), Positives = 11/32 (34%), Gaps = 4/32 (12%)
Query: 78 CGRVFNRKDNLREHLRAHAGETKRKKKFKCDK 109
CG+ F+ L H R H GE
Sbjct: 18 CGKSFSFNSQLIVHQRIHTGE----NPSGPSS 45
>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 59.8 bits (146), Expect = 7e-12
Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 5/48 (10%)
Query: 150 HRRKHTGERPYECKEVCGRVFNRKDNLREHLRAHAGETKRKKKFKCDK 197
+GE+P++C+E CG+ F + L H R H GE K
Sbjct: 3 SGSSGSGEKPFKCEE-CGKRFTQNSQLHSHQRVHTGE----KPSGPSS 45
Score = 51.0 bits (123), Expect = 9e-09
Identities = 18/42 (42%), Positives = 20/42 (47%)
Query: 234 RHMKTHSGVKPHVCEYCEKAFIQASQLKAHMFHHTGENGHTC 275
+ SG KP CE C K F Q SQL +H HTGE
Sbjct: 2 SSGSSGSGEKPFKCEECGKRFTQNSQLHSHQRVHTGEKPSGP 43
Score = 50.2 bits (121), Expect = 2e-08
Identities = 16/42 (38%), Positives = 17/42 (40%)
Query: 319 RHCLLHTGVKPHKCPICTKGFTMKSSLKIHLLTHTKEPPKSC 360
+G KP KC C K FT S L H HT E P
Sbjct: 2 SSGSSGSGEKPFKCEECGKRFTQNSQLHSHQRVHTGEKPSGP 43
Score = 49.8 bits (120), Expect = 2e-08
Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Query: 123 HERLHA-EKLYECDICKNRFPSSGAMKKHRRKHTGERPYEC 162
+ EK ++C+ C RF + + H+R HTGE+P
Sbjct: 3 SGSSGSGEKPFKCEECGKRFTQNSQLHSHQRVHTGEKPSGP 43
Score = 49.4 bits (119), Expect = 3e-08
Identities = 13/38 (34%), Positives = 18/38 (47%)
Query: 295 IHEGADPYQCDICRKTFIRKEDLTRHCLLHTGVKPHKC 332
G P++C+ C K F + L H +HTG KP
Sbjct: 6 SGSGEKPFKCEECGKRFTQNSQLHSHQRVHTGEKPSGP 43
Score = 40.2 bits (95), Expect = 6e-05
Identities = 12/42 (28%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 263 HMFHHTGENGHTCELCNKTFNRKARLELHMKYIHEGADPYQC 304
+GE CE C K F + ++L H + +H G P
Sbjct: 3 SGSSGSGEKPFKCEECGKRFTQNSQLHSHQR-VHTGEKPSGP 43
Score = 39.4 bits (93), Expect = 1e-04
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 5/45 (11%)
Query: 91 HLRAHAGETKRKKKFKCDKCEKQFYGLTLLRIHERLH-AEKLYEC 134
+ +GE K FKC++C K+F + L H+R+H EK
Sbjct: 3 SGSSGSGE----KPFKCEECGKRFTQNSQLHSHQRVHTGEKPSGP 43
Score = 34.0 bits (79), Expect = 0.010
Identities = 10/31 (32%), Positives = 14/31 (45%)
Query: 348 HLLTHTKEPPKSCEVCGRAFIRQDCLIRHLR 378
+ + E P CE CG+ F + L H R
Sbjct: 3 SGSSGSGEKPFKCEECGKRFTQNSQLHSHQR 33
Score = 33.3 bits (77), Expect = 0.014
Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 4/37 (10%)
Query: 179 HLRAHAGETKRKKKFKCDKCEKQFYGLTLLRIHERLH 215
+ +GE K FKC++C K+F + L H+R+H
Sbjct: 3 SGSSGSGE----KPFKCEECGKRFTQNSQLHSHQRVH 35
Score = 32.5 bits (75), Expect = 0.030
Identities = 10/32 (31%), Positives = 12/32 (37%), Gaps = 4/32 (12%)
Query: 78 CGRVFNRKDNLREHLRAHAGETKRKKKFKCDK 109
CG+ F + L H R H GE K
Sbjct: 18 CGKRFTQNSQLHSHQRVHTGE----KPSGPSS 45
>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 59.8 bits (146), Expect = 7e-12
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 5/46 (10%)
Query: 150 HRRKHTGERPYECKEVCGRVFNRKDNLREHLRAHAGETKRKKKFKC 195
+GE+PY+C E CG+VF + +L H R H GE K
Sbjct: 3 SGSSGSGEKPYKCNE-CGKVFTQNSHLTNHWRIHTGE----KPSGP 43
Score = 49.8 bits (120), Expect = 2e-08
Identities = 13/43 (30%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Query: 123 HERLH-AEKLYECDICKNRFPSSGAMKKHRRKHTGERPYECKE 164
EK Y+C+ C F + + H R HTGE+P
Sbjct: 3 SGSSGSGEKPYKCNECGKVFTQNSHLTNHWRIHTGEKPSGPSS 45
Score = 49.0 bits (118), Expect = 4e-08
Identities = 15/38 (39%), Positives = 19/38 (50%)
Query: 295 IHEGADPYQCDICRKTFIRKEDLTRHCLLHTGVKPHKC 332
G PY+C+ C K F + LT H +HTG KP
Sbjct: 6 SGSGEKPYKCNECGKVFTQNSHLTNHWRIHTGEKPSGP 43
Score = 48.3 bits (116), Expect = 7e-08
Identities = 16/42 (38%), Positives = 18/42 (42%)
Query: 234 RHMKTHSGVKPHVCEYCEKAFIQASQLKAHMFHHTGENGHTC 275
+ SG KP+ C C K F Q S L H HTGE
Sbjct: 2 SSGSSGSGEKPYKCNECGKVFTQNSHLTNHWRIHTGEKPSGP 43
Score = 47.1 bits (113), Expect = 2e-07
Identities = 16/42 (38%), Positives = 18/42 (42%)
Query: 319 RHCLLHTGVKPHKCPICTKGFTMKSSLKIHLLTHTKEPPKSC 360
+G KP+KC C K FT S L H HT E P
Sbjct: 2 SSGSSGSGEKPYKCNECGKVFTQNSHLTNHWRIHTGEKPSGP 43
Score = 40.6 bits (96), Expect = 4e-05
Identities = 12/43 (27%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Query: 262 AHMFHHTGENGHTCELCNKTFNRKARLELHMKYIHEGADPYQC 304
+ +GE + C C K F + + L H + IH G P
Sbjct: 2 SSGSSGSGEKPYKCNECGKVFTQNSHLTNHWR-IHTGEKPSGP 43
Score = 34.8 bits (81), Expect = 0.005
Identities = 9/31 (29%), Positives = 13/31 (41%)
Query: 348 HLLTHTKEPPKSCEVCGRAFIRQDCLIRHLR 378
+ + E P C CG+ F + L H R
Sbjct: 3 SGSSGSGEKPYKCNECGKVFTQNSHLTNHWR 33
Score = 31.7 bits (73), Expect = 0.054
Identities = 11/30 (36%), Positives = 14/30 (46%), Gaps = 4/30 (13%)
Query: 78 CGRVFNRKDNLREHLRAHAGETKRKKKFKC 107
CG+VF + +L H R H GE K
Sbjct: 18 CGKVFTQNSHLTNHWRIHTGE----KPSGP 43
>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 59.8 bits (146), Expect = 7e-12
Identities = 19/46 (41%), Positives = 23/46 (50%), Gaps = 5/46 (10%)
Query: 150 HRRKHTGERPYECKEVCGRVFNRKDNLREHLRAHAGETKRKKKFKC 195
TGE+PY C E CG+ F +K NL +H R H GE K
Sbjct: 3 SGSSGTGEKPYRCGE-CGKAFAQKANLTQHQRIHTGE----KPSGP 43
Score = 48.7 bits (117), Expect = 6e-08
Identities = 16/38 (42%), Positives = 21/38 (55%)
Query: 295 IHEGADPYQCDICRKTFIRKEDLTRHCLLHTGVKPHKC 332
G PY+C C K F +K +LT+H +HTG KP
Sbjct: 6 SGTGEKPYRCGECGKAFAQKANLTQHQRIHTGEKPSGP 43
Score = 47.5 bits (114), Expect = 1e-07
Identities = 13/41 (31%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Query: 123 HERLH-AEKLYECDICKNRFPSSGAMKKHRRKHTGERPYEC 162
EK Y C C F + +H+R HTGE+P
Sbjct: 3 SGSSGTGEKPYRCGECGKAFAQKANLTQHQRIHTGEKPSGP 43
Score = 47.5 bits (114), Expect = 2e-07
Identities = 15/42 (35%), Positives = 19/42 (45%)
Query: 234 RHMKTHSGVKPHVCEYCEKAFIQASQLKAHMFHHTGENGHTC 275
+ +G KP+ C C KAF Q + L H HTGE
Sbjct: 2 SSGSSGTGEKPYRCGECGKAFAQKANLTQHQRIHTGEKPSGP 43
Score = 46.0 bits (110), Expect = 5e-07
Identities = 15/42 (35%), Positives = 19/42 (45%)
Query: 319 RHCLLHTGVKPHKCPICTKGFTMKSSLKIHLLTHTKEPPKSC 360
TG KP++C C K F K++L H HT E P
Sbjct: 2 SSGSSGTGEKPYRCGECGKAFAQKANLTQHQRIHTGEKPSGP 43
Score = 41.0 bits (97), Expect = 3e-05
Identities = 15/38 (39%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Query: 267 HTGENGHTCELCNKTFNRKARLELHMKYIHEGADPYQC 304
TGE + C C K F +KA L H + IH G P
Sbjct: 7 GTGEKPYRCGECGKAFAQKANLTQHQR-IHTGEKPSGP 43
Score = 34.0 bits (79), Expect = 0.009
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 348 HLLTHTKEPPKSCEVCGRAFIRQDCLIRHLR 378
+ T E P C CG+AF ++ L +H R
Sbjct: 3 SGSSGTGEKPYRCGECGKAFAQKANLTQHQR 33
Score = 31.3 bits (72), Expect = 0.069
Identities = 12/30 (40%), Positives = 15/30 (50%), Gaps = 4/30 (13%)
Query: 78 CGRVFNRKDNLREHLRAHAGETKRKKKFKC 107
CG+ F +K NL +H R H GE K
Sbjct: 18 CGKAFAQKANLTQHQRIHTGE----KPSGP 43
>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 59.5 bits (145), Expect = 8e-12
Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 5/47 (10%)
Query: 149 KHRRKHTGERPYECKEVCGRVFNRKDNLREHLRAHAGETKRKKKFKC 195
TGE+P++C + CG+ F+ L +H R H GE K
Sbjct: 2 SSGSSGTGEKPFDCID-CGKAFSDHIGLNQHRRIHTGE----KPSGP 43
Score = 50.2 bits (121), Expect = 2e-08
Identities = 13/41 (31%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Query: 123 HERLHA-EKLYECDICKNRFPSSGAMKKHRRKHTGERPYEC 162
EK ++C C F + +HRR HTGE+P
Sbjct: 3 SGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRIHTGEKPSGP 43
Score = 47.1 bits (113), Expect = 2e-07
Identities = 13/38 (34%), Positives = 16/38 (42%)
Query: 295 IHEGADPYQCDICRKTFIRKEDLTRHCLLHTGVKPHKC 332
G P+ C C K F L +H +HTG KP
Sbjct: 6 SGTGEKPFDCIDCGKAFSDHIGLNQHRRIHTGEKPSGP 43
Score = 46.7 bits (112), Expect = 3e-07
Identities = 14/42 (33%), Positives = 16/42 (38%)
Query: 235 HMKTHSGVKPHVCEYCEKAFIQASQLKAHMFHHTGENGHTCE 276
+ +G KP C C KAF L H HTGE
Sbjct: 3 SGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRIHTGEKPSGPS 44
Score = 46.0 bits (110), Expect = 5e-07
Identities = 14/42 (33%), Positives = 15/42 (35%)
Query: 320 HCLLHTGVKPHKCPICTKGFTMKSSLKIHLLTHTKEPPKSCE 361
TG KP C C K F+ L H HT E P
Sbjct: 3 SGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRIHTGEKPSGPS 44
Score = 38.7 bits (91), Expect = 2e-04
Identities = 13/38 (34%), Positives = 15/38 (39%), Gaps = 1/38 (2%)
Query: 267 HTGENGHTCELCNKTFNRKARLELHMKYIHEGADPYQC 304
TGE C C K F+ L H + IH G P
Sbjct: 7 GTGEKPFDCIDCGKAFSDHIGLNQHRR-IHTGEKPSGP 43
Score = 34.8 bits (81), Expect = 0.005
Identities = 11/31 (35%), Positives = 14/31 (45%)
Query: 348 HLLTHTKEPPKSCEVCGRAFIRQDCLIRHLR 378
+ T E P C CG+AF L +H R
Sbjct: 3 SGSSGTGEKPFDCIDCGKAFSDHIGLNQHRR 33
Score = 31.7 bits (73), Expect = 0.050
Identities = 15/70 (21%), Positives = 20/70 (28%), Gaps = 28/70 (40%)
Query: 179 HLRAHAGETKRKKKFKCDKCEKQFYGLTLLRIHERLHGLIERTCYARFAAKETLNRHMKT 238
+ GE K F C C K F+ LN+H +
Sbjct: 3 SGSSGTGE----KPFDCIDCGK------------------------AFSDHIGLNQHRRI 34
Query: 239 HSGVKPHVCE 248
H+G KP
Sbjct: 35 HTGEKPSGPS 44
Score = 30.6 bits (70), Expect = 0.16
Identities = 10/30 (33%), Positives = 13/30 (43%), Gaps = 4/30 (13%)
Query: 78 CGRVFNRKDNLREHLRAHAGETKRKKKFKC 107
CG+ F+ L +H R H GE K
Sbjct: 18 CGKAFSDHIGLNQHRRIHTGE----KPSGP 43
>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 59.4 bits (145), Expect = 8e-12
Identities = 15/48 (31%), Positives = 19/48 (39%), Gaps = 5/48 (10%)
Query: 149 KHRRKHTGERPYECKEVCGRVFNRKDNLREHLRAHAGETKRKKKFKCD 196
TGE+PY C CG+ F +L +HLR H E
Sbjct: 2 SSGSSGTGEKPYSCNV-CGKAFVLSAHLNQHLRVHTQE----TLSGPS 44
Score = 50.2 bits (121), Expect = 2e-08
Identities = 13/43 (30%), Positives = 20/43 (46%)
Query: 234 RHMKTHSGVKPHVCEYCEKAFIQASQLKAHMFHHTGENGHTCE 276
+ +G KP+ C C KAF+ ++ L H+ HT E
Sbjct: 2 SSGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVHTQETLSGPS 44
Score = 49.4 bits (119), Expect = 3e-08
Identities = 12/42 (28%), Positives = 16/42 (38%), Gaps = 1/42 (2%)
Query: 123 HERLH-AEKLYECDICKNRFPSSGAMKKHRRKHTGERPYECK 163
EK Y C++C F S + +H R HT E
Sbjct: 3 SGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVHTQETLSGPS 44
Score = 49.4 bits (119), Expect = 3e-08
Identities = 11/42 (26%), Positives = 16/42 (38%), Gaps = 1/42 (2%)
Query: 291 HMKYIHEGADPYQCDICRKTFIRKEDLTRHCLLHTGVKPHKC 332
G PY C++C K F+ L +H +HT
Sbjct: 3 SGS-SGTGEKPYSCNVCGKAFVLSAHLNQHLRVHTQETLSGP 43
Score = 45.2 bits (108), Expect = 9e-07
Identities = 14/43 (32%), Positives = 19/43 (44%)
Query: 319 RHCLLHTGVKPHKCPICTKGFTMKSSLKIHLLTHTKEPPKSCE 361
TG KP+ C +C K F + + L HL HT+E
Sbjct: 2 SSGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVHTQETLSGPS 44
Score = 42.5 bits (101), Expect = 9e-06
Identities = 11/43 (25%), Positives = 17/43 (39%), Gaps = 1/43 (2%)
Query: 263 HMFHHTGENGHTCELCNKTFNRKARLELHMKYIHEGADPYQCD 305
TGE ++C +C K F A L H++ +H
Sbjct: 3 SGSSGTGEKPYSCNVCGKAFVLSAHLNQHLR-VHTQETLSGPS 44
Score = 40.2 bits (95), Expect = 6e-05
Identities = 13/47 (27%), Positives = 17/47 (36%), Gaps = 5/47 (10%)
Query: 90 EHLRAHAGETKRKKKFKCDKCEKQFYGLTLLRIHERLH-AEKLYECD 135
+ GE K + C+ C K F L H R+H E L
Sbjct: 2 SSGSSGTGE----KPYSCNVCGKAFVLSAHLNQHLRVHTQETLSGPS 44
Score = 36.7 bits (86), Expect = 0.001
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 348 HLLTHTKEPPKSCEVCGRAFIRQDCLIRHLR 378
+ T E P SC VCG+AF+ L +HLR
Sbjct: 3 SGSSGTGEKPYSCNVCGKAFVLSAHLNQHLR 33
Score = 32.5 bits (75), Expect = 0.031
Identities = 11/71 (15%), Positives = 18/71 (25%), Gaps = 28/71 (39%)
Query: 178 EHLRAHAGETKRKKKFKCDKCEKQFYGLTLLRIHERLHGLIERTCYARFAAKETLNRHMK 237
+ GE K + C+ C K F LN+H++
Sbjct: 2 SSGSSGTGE----KPYSCNVCGK------------------------AFVLSAHLNQHLR 33
Query: 238 THSGVKPHVCE 248
H+
Sbjct: 34 VHTQETLSGPS 44
Score = 32.1 bits (74), Expect = 0.046
Identities = 10/33 (30%), Positives = 13/33 (39%), Gaps = 4/33 (12%)
Query: 76 KVCGRVFNRKDNLREHLRAHAGETKRKKKFKCD 108
VCG+ F +L +HLR H E
Sbjct: 16 NVCGKAFVLSAHLNQHLRVHTQE----TLSGPS 44
>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 59.5 bits (145), Expect = 8e-12
Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 5/47 (10%)
Query: 149 KHRRKHTGERPYECKEVCGRVFNRKDNLREHLRAHAGETKRKKKFKC 195
TGE+PY+C E CG+VF + +L H R H G K
Sbjct: 2 SSGSSGTGEKPYKCNE-CGKVFTQNSHLARHRRVHTGG----KPSGP 43
Score = 49.1 bits (118), Expect = 4e-08
Identities = 15/38 (39%), Positives = 19/38 (50%)
Query: 295 IHEGADPYQCDICRKTFIRKEDLTRHCLLHTGVKPHKC 332
G PY+C+ C K F + L RH +HTG KP
Sbjct: 6 SGTGEKPYKCNECGKVFTQNSHLARHRRVHTGGKPSGP 43
Score = 48.7 bits (117), Expect = 5e-08
Identities = 13/41 (31%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Query: 123 HERLH-AEKLYECDICKNRFPSSGAMKKHRRKHTGERPYEC 162
EK Y+C+ C F + + +HRR HTG +P
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRRVHTGGKPSGP 43
Score = 46.7 bits (112), Expect = 3e-07
Identities = 14/42 (33%), Positives = 17/42 (40%)
Query: 235 HMKTHSGVKPHVCEYCEKAFIQASQLKAHMFHHTGENGHTCE 276
+ +G KP+ C C K F Q S L H HTG
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRRVHTGGKPSGPS 44
Score = 45.2 bits (108), Expect = 1e-06
Identities = 16/42 (38%), Positives = 17/42 (40%)
Query: 320 HCLLHTGVKPHKCPICTKGFTMKSSLKIHLLTHTKEPPKSCE 361
TG KP+KC C K FT S L H HT P
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRRVHTGGKPSGPS 44
Score = 39.8 bits (94), Expect = 9e-05
Identities = 12/43 (27%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Query: 262 AHMFHHTGENGHTCELCNKTFNRKARLELHMKYIHEGADPYQC 304
+ TGE + C C K F + + L H + +H G P
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLARHRR-VHTGGKPSGP 43
Score = 38.3 bits (90), Expect = 3e-04
Identities = 13/45 (28%), Positives = 19/45 (42%), Gaps = 5/45 (11%)
Query: 91 HLRAHAGETKRKKKFKCDKCEKQFYGLTLLRIHERLH-AEKLYEC 134
+ GE K +KC++C K F + L H R+H K
Sbjct: 3 SGSSGTGE----KPYKCNECGKVFTQNSHLARHRRVHTGGKPSGP 43
Score = 34.0 bits (79), Expect = 0.010
Identities = 11/31 (35%), Positives = 14/31 (45%)
Query: 348 HLLTHTKEPPKSCEVCGRAFIRQDCLIRHLR 378
+ T E P C CG+ F + L RH R
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRR 33
Score = 31.0 bits (71), Expect = 0.11
Identities = 15/70 (21%), Positives = 21/70 (30%), Gaps = 28/70 (40%)
Query: 179 HLRAHAGETKRKKKFKCDKCEKQFYGLTLLRIHERLHGLIERTCYARFAAKETLNRHMKT 238
+ GE K +KC++C K F L RH +
Sbjct: 3 SGSSGTGE----KPYKCNECGK------------------------VFTQNSHLARHRRV 34
Query: 239 HSGVKPHVCE 248
H+G KP
Sbjct: 35 HTGGKPSGPS 44
Score = 30.6 bits (70), Expect = 0.16
Identities = 10/30 (33%), Positives = 13/30 (43%), Gaps = 4/30 (13%)
Query: 78 CGRVFNRKDNLREHLRAHAGETKRKKKFKC 107
CG+VF + +L H R H G K
Sbjct: 18 CGKVFTQNSHLARHRRVHTGG----KPSGP 43
>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 59.4 bits (145), Expect = 8e-12
Identities = 19/38 (50%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Query: 149 KHRRKHTGERPYECKEVCGRVFNRKDNLREHLRAHAGE 186
TGE PYEC E CG+VF+RKD L H + H+G+
Sbjct: 2 SSGSSGTGENPYECCE-CGKVFSRKDQLVSHQKTHSGQ 38
Score = 50.6 bits (122), Expect = 1e-08
Identities = 12/41 (29%), Positives = 21/41 (51%)
Query: 235 HMKTHSGVKPHVCEYCEKAFIQASQLKAHMFHHTGENGHTC 275
+ +G P+ C C K F + QL +H H+G++G +
Sbjct: 3 SGSSGTGENPYECCECGKVFSRKDQLVSHQKTHSGQSGPSS 43
Score = 48.3 bits (116), Expect = 8e-08
Identities = 13/37 (35%), Positives = 18/37 (48%)
Query: 324 HTGVKPHKCPICTKGFTMKSSLKIHLLTHTKEPPKSC 360
TG P++C C K F+ K L H TH+ + S
Sbjct: 7 GTGENPYECCECGKVFSRKDQLVSHQKTHSGQSGPSS 43
Score = 47.9 bits (115), Expect = 1e-07
Identities = 13/38 (34%), Positives = 17/38 (44%)
Query: 295 IHEGADPYQCDICRKTFIRKEDLTRHCLLHTGVKPHKC 332
G +PY+C C K F RK+ L H H+G
Sbjct: 6 SGTGENPYECCECGKVFSRKDQLVSHQKTHSGQSGPSS 43
Score = 44.8 bits (107), Expect = 1e-06
Identities = 9/41 (21%), Positives = 14/41 (34%), Gaps = 1/41 (2%)
Query: 123 HERLH-AEKLYECDICKNRFPSSGAMKKHRRKHTGERPYEC 162
E YEC C F + H++ H+G+
Sbjct: 3 SGSSGTGENPYECCECGKVFSRKDQLVSHQKTHSGQSGPSS 43
Score = 39.8 bits (94), Expect = 8e-05
Identities = 15/38 (39%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Query: 267 HTGENGHTCELCNKTFNRKARLELHMKYIHEGADPYQC 304
TGEN + C C K F+RK +L H K H G
Sbjct: 7 GTGENPYECCECGKVFSRKDQLVSHQK-THSGQSGPSS 43
Score = 37.1 bits (87), Expect = 7e-04
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 348 HLLTHTKEPPKSCEVCGRAFIRQDCLIRHLR 378
+ T E P C CG+ F R+D L+ H +
Sbjct: 3 SGSSGTGENPYECCECGKVFSRKDQLVSHQK 33
Score = 31.7 bits (73), Expect = 0.053
Identities = 11/21 (52%), Positives = 16/21 (76%)
Query: 78 CGRVFNRKDNLREHLRAHAGE 98
CG+VF+RKD L H + H+G+
Sbjct: 18 CGKVFSRKDQLVSHQKTHSGQ 38
>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 59.4 bits (145), Expect = 8e-12
Identities = 19/46 (41%), Positives = 22/46 (47%), Gaps = 5/46 (10%)
Query: 150 HRRKHTGERPYECKEVCGRVFNRKDNLREHLRAHAGETKRKKKFKC 195
TGE+P+EC E C + FN K NL H R H GE K
Sbjct: 3 SGSSGTGEKPFECSE-CQKAFNTKSNLIVHQRTHTGE----KPSGP 43
Score = 51.3 bits (124), Expect = 6e-09
Identities = 17/43 (39%), Positives = 20/43 (46%)
Query: 319 RHCLLHTGVKPHKCPICTKGFTMKSSLKIHLLTHTKEPPKSCE 361
TG KP +C C K F KS+L +H THT E P
Sbjct: 2 SSGSSGTGEKPFECSECQKAFNTKSNLIVHQRTHTGEKPSGPS 44
Score = 50.2 bits (121), Expect = 2e-08
Identities = 15/43 (34%), Positives = 18/43 (41%)
Query: 234 RHMKTHSGVKPHVCEYCEKAFIQASQLKAHMFHHTGENGHTCE 276
+ +G KP C C+KAF S L H HTGE
Sbjct: 2 SSGSSGTGEKPFECSECQKAFNTKSNLIVHQRTHTGEKPSGPS 44
Score = 48.2 bits (116), Expect = 8e-08
Identities = 13/41 (31%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Query: 123 HERLH-AEKLYECDICKNRFPSSGAMKKHRRKHTGERPYEC 162
EK +EC C+ F + + H+R HTGE+P
Sbjct: 3 SGSSGTGEKPFECSECQKAFNTKSNLIVHQRTHTGEKPSGP 43
Score = 47.5 bits (114), Expect = 1e-07
Identities = 14/38 (36%), Positives = 18/38 (47%)
Query: 295 IHEGADPYQCDICRKTFIRKEDLTRHCLLHTGVKPHKC 332
G P++C C+K F K +L H HTG KP
Sbjct: 6 SGTGEKPFECSECQKAFNTKSNLIVHQRTHTGEKPSGP 43
Score = 39.4 bits (93), Expect = 1e-04
Identities = 14/38 (36%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Query: 267 HTGENGHTCELCNKTFNRKARLELHMKYIHEGADPYQC 304
TGE C C K FN K+ L +H + H G P
Sbjct: 7 GTGEKPFECSECQKAFNTKSNLIVHQR-THTGEKPSGP 43
Score = 34.4 bits (80), Expect = 0.007
Identities = 11/31 (35%), Positives = 14/31 (45%)
Query: 348 HLLTHTKEPPKSCEVCGRAFIRQDCLIRHLR 378
+ T E P C C +AF + LI H R
Sbjct: 3 SGSSGTGEKPFECSECQKAFNTKSNLIVHQR 33
Score = 31.7 bits (73), Expect = 0.057
Identities = 12/30 (40%), Positives = 13/30 (43%), Gaps = 4/30 (13%)
Query: 78 CGRVFNRKDNLREHLRAHAGETKRKKKFKC 107
C + FN K NL H R H GE K
Sbjct: 18 CQKAFNTKSNLIVHQRTHTGE----KPSGP 43
>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 59.4 bits (145), Expect = 9e-12
Identities = 17/46 (36%), Positives = 21/46 (45%), Gaps = 5/46 (10%)
Query: 150 HRRKHTGERPYECKEVCGRVFNRKDNLREHLRAHAGETKRKKKFKC 195
TGE P+ C E CG+VF K NL H + H GE +
Sbjct: 3 SGSSGTGENPFICSE-CGKVFTHKTNLIIHQKIHTGE----RPSGP 43
Score = 48.3 bits (116), Expect = 8e-08
Identities = 11/41 (26%), Positives = 15/41 (36%), Gaps = 1/41 (2%)
Query: 123 HERLH-AEKLYECDICKNRFPSSGAMKKHRRKHTGERPYEC 162
E + C C F + H++ HTGERP
Sbjct: 3 SGSSGTGENPFICSECGKVFTHKTNLIIHQKIHTGERPSGP 43
Score = 47.9 bits (115), Expect = 9e-08
Identities = 16/37 (43%), Positives = 18/37 (48%)
Query: 324 HTGVKPHKCPICTKGFTMKSSLKIHLLTHTKEPPKSC 360
TG P C C K FT K++L IH HT E P
Sbjct: 7 GTGENPFICSECGKVFTHKTNLIIHQKIHTGERPSGP 43
Score = 47.9 bits (115), Expect = 1e-07
Identities = 13/38 (34%), Positives = 18/38 (47%)
Query: 295 IHEGADPYQCDICRKTFIRKEDLTRHCLLHTGVKPHKC 332
G +P+ C C K F K +L H +HTG +P
Sbjct: 6 SGTGENPFICSECGKVFTHKTNLIIHQKIHTGERPSGP 43
Score = 47.5 bits (114), Expect = 1e-07
Identities = 12/41 (29%), Positives = 16/41 (39%)
Query: 235 HMKTHSGVKPHVCEYCEKAFIQASQLKAHMFHHTGENGHTC 275
+ +G P +C C K F + L H HTGE
Sbjct: 3 SGSSGTGENPFICSECGKVFTHKTNLIIHQKIHTGERPSGP 43
Score = 40.9 bits (97), Expect = 3e-05
Identities = 16/43 (37%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Query: 262 AHMFHHTGENGHTCELCNKTFNRKARLELHMKYIHEGADPYQC 304
+ TGEN C C K F K L +H K IH G P
Sbjct: 2 SSGSSGTGENPFICSECGKVFTHKTNLIIHQK-IHTGERPSGP 43
Score = 34.4 bits (80), Expect = 0.006
Identities = 10/31 (32%), Positives = 14/31 (45%)
Query: 348 HLLTHTKEPPKSCEVCGRAFIRQDCLIRHLR 378
+ T E P C CG+ F + LI H +
Sbjct: 3 SGSSGTGENPFICSECGKVFTHKTNLIIHQK 33
Score = 31.7 bits (73), Expect = 0.062
Identities = 11/30 (36%), Positives = 14/30 (46%), Gaps = 4/30 (13%)
Query: 78 CGRVFNRKDNLREHLRAHAGETKRKKKFKC 107
CG+VF K NL H + H GE +
Sbjct: 18 CGKVFTHKTNLIIHQKIHTGE----RPSGP 43
>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2ysv_A
Length = 46
Score = 59.4 bits (145), Expect = 9e-12
Identities = 19/47 (40%), Positives = 25/47 (53%), Gaps = 5/47 (10%)
Query: 149 KHRRKHTGERPYECKEVCGRVFNRKDNLREHLRAHAGETKRKKKFKC 195
TGE+PYECKE CG+ F++ +L +H R H GE K
Sbjct: 2 SSGSSGTGEKPYECKE-CGKAFSQTTHLIQHQRVHTGE----KPSGP 43
Score = 49.0 bits (118), Expect = 4e-08
Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Query: 123 HERLH-AEKLYECDICKNRFPSSGAMKKHRRKHTGERPYEC 162
EK YEC C F + + +H+R HTGE+P
Sbjct: 3 SGSSGTGEKPYECKECGKAFSQTTHLIQHQRVHTGEKPSGP 43
Score = 48.3 bits (116), Expect = 9e-08
Identities = 14/38 (36%), Positives = 18/38 (47%)
Query: 295 IHEGADPYQCDICRKTFIRKEDLTRHCLLHTGVKPHKC 332
G PY+C C K F + L +H +HTG KP
Sbjct: 6 SGTGEKPYECKECGKAFSQTTHLIQHQRVHTGEKPSGP 43
Score = 47.1 bits (113), Expect = 2e-07
Identities = 15/42 (35%), Positives = 20/42 (47%)
Query: 234 RHMKTHSGVKPHVCEYCEKAFIQASQLKAHMFHHTGENGHTC 275
+ +G KP+ C+ C KAF Q + L H HTGE
Sbjct: 2 SSGSSGTGEKPYECKECGKAFSQTTHLIQHQRVHTGEKPSGP 43
Score = 44.4 bits (106), Expect = 2e-06
Identities = 14/42 (33%), Positives = 18/42 (42%)
Query: 319 RHCLLHTGVKPHKCPICTKGFTMKSSLKIHLLTHTKEPPKSC 360
TG KP++C C K F+ + L H HT E P
Sbjct: 2 SSGSSGTGEKPYECKECGKAFSQTTHLIQHQRVHTGEKPSGP 43
Score = 39.8 bits (94), Expect = 8e-05
Identities = 12/42 (28%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 263 HMFHHTGENGHTCELCNKTFNRKARLELHMKYIHEGADPYQC 304
TGE + C+ C K F++ L H + +H G P
Sbjct: 3 SGSSGTGEKPYECKECGKAFSQTTHLIQHQR-VHTGEKPSGP 43
Score = 37.5 bits (88), Expect = 5e-04
Identities = 14/45 (31%), Positives = 20/45 (44%), Gaps = 5/45 (11%)
Query: 91 HLRAHAGETKRKKKFKCDKCEKQFYGLTLLRIHERLHA-EKLYEC 134
+ GE K ++C +C K F T L H+R+H EK
Sbjct: 3 SGSSGTGE----KPYECKECGKAFSQTTHLIQHQRVHTGEKPSGP 43
Score = 34.0 bits (79), Expect = 0.010
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 348 HLLTHTKEPPKSCEVCGRAFIRQDCLIRHLR 378
+ T E P C+ CG+AF + LI+H R
Sbjct: 3 SGSSGTGEKPYECKECGKAFSQTTHLIQHQR 33
Score = 30.2 bits (69), Expect = 0.20
Identities = 11/32 (34%), Positives = 16/32 (50%), Gaps = 4/32 (12%)
Query: 76 KVCGRVFNRKDNLREHLRAHAGETKRKKKFKC 107
K CG+ F++ +L +H R H GE K
Sbjct: 16 KECGKAFSQTTHLIQHQRVHTGE----KPSGP 43
>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 59.5 bits (145), Expect = 9e-12
Identities = 17/47 (36%), Positives = 21/47 (44%), Gaps = 5/47 (10%)
Query: 149 KHRRKHTGERPYECKEVCGRVFNRKDNLREHLRAHAGETKRKKKFKC 195
TGE+PYEC + CG+ F +K L H R H GE
Sbjct: 2 SSGSSGTGEKPYECSD-CGKSFIKKSQLHVHQRIHTGE----NPSGP 43
Score = 50.6 bits (122), Expect = 1e-08
Identities = 14/41 (34%), Positives = 16/41 (39%), Gaps = 1/41 (2%)
Query: 123 HERLH-AEKLYECDICKNRFPSSGAMKKHRRKHTGERPYEC 162
EK YEC C F + H+R HTGE P
Sbjct: 3 SGSSGTGEKPYECSDCGKSFIKKSQLHVHQRIHTGENPSGP 43
Score = 49.8 bits (120), Expect = 2e-08
Identities = 17/41 (41%), Positives = 22/41 (53%)
Query: 235 HMKTHSGVKPHVCEYCEKAFIQASQLKAHMFHHTGENGHTC 275
+ +G KP+ C C K+FI+ SQL H HTGEN
Sbjct: 3 SGSSGTGEKPYECSDCGKSFIKKSQLHVHQRIHTGENPSGP 43
Score = 49.5 bits (119), Expect = 3e-08
Identities = 15/38 (39%), Positives = 19/38 (50%)
Query: 295 IHEGADPYQCDICRKTFIRKEDLTRHCLLHTGVKPHKC 332
G PY+C C K+FI+K L H +HTG P
Sbjct: 6 SGTGEKPYECSDCGKSFIKKSQLHVHQRIHTGENPSGP 43
Score = 48.3 bits (116), Expect = 7e-08
Identities = 16/41 (39%), Positives = 19/41 (46%)
Query: 320 HCLLHTGVKPHKCPICTKGFTMKSSLKIHLLTHTKEPPKSC 360
TG KP++C C K F KS L +H HT E P
Sbjct: 3 SGSSGTGEKPYECSDCGKSFIKKSQLHVHQRIHTGENPSGP 43
Score = 40.6 bits (96), Expect = 4e-05
Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 262 AHMFHHTGENGHTCELCNKTFNRKARLELHMKYIHEGADPYQC 304
+ TGE + C C K+F +K++L +H + IH G +P
Sbjct: 2 SSGSSGTGEKPYECSDCGKSFIKKSQLHVHQR-IHTGENPSGP 43
Score = 33.7 bits (78), Expect = 0.011
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 348 HLLTHTKEPPKSCEVCGRAFIRQDCLIRHLR 378
+ T E P C CG++FI++ L H R
Sbjct: 3 SGSSGTGEKPYECSDCGKSFIKKSQLHVHQR 33
Score = 29.8 bits (68), Expect = 0.25
Identities = 10/30 (33%), Positives = 12/30 (40%), Gaps = 4/30 (13%)
Query: 78 CGRVFNRKDNLREHLRAHAGETKRKKKFKC 107
CG+ F +K L H R H GE
Sbjct: 18 CGKSFIKKSQLHVHQRIHTGE----NPSGP 43
>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 45
Score = 59.5 bits (145), Expect = 9e-12
Identities = 17/46 (36%), Positives = 21/46 (45%), Gaps = 5/46 (10%)
Query: 150 HRRKHTGERPYECKEVCGRVFNRKDNLREHLRAHAGETKRKKKFKC 195
TG++P+EC CG+ F K NL H R H GE K
Sbjct: 3 SGSSGTGQKPFECTH-CGKSFRAKGNLVTHQRIHTGE----KSGPS 43
Score = 50.6 bits (122), Expect = 1e-08
Identities = 12/42 (28%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 122 IHERLH-AEKLYECDICKNRFPSSGAMKKHRRKHTGERPYEC 162
+K +EC C F + G + H+R HTGE+
Sbjct: 2 SSGSSGTGQKPFECTHCGKSFRAKGNLVTHQRIHTGEKSGPS 43
Score = 47.9 bits (115), Expect = 9e-08
Identities = 13/38 (34%), Positives = 18/38 (47%)
Query: 295 IHEGADPYQCDICRKTFIRKEDLTRHCLLHTGVKPHKC 332
G P++C C K+F K +L H +HTG K
Sbjct: 6 SGTGQKPFECTHCGKSFRAKGNLVTHQRIHTGEKSGPS 43
Score = 46.4 bits (111), Expect = 3e-07
Identities = 13/41 (31%), Positives = 17/41 (41%)
Query: 235 HMKTHSGVKPHVCEYCEKAFIQASQLKAHMFHHTGENGHTC 275
+ +G KP C +C K+F L H HTGE
Sbjct: 3 SGSSGTGQKPFECTHCGKSFRAKGNLVTHQRIHTGEKSGPS 43
Score = 46.0 bits (110), Expect = 4e-07
Identities = 14/37 (37%), Positives = 16/37 (43%)
Query: 324 HTGVKPHKCPICTKGFTMKSSLKIHLLTHTKEPPKSC 360
TG KP +C C K F K +L H HT E
Sbjct: 7 GTGQKPFECTHCGKSFRAKGNLVTHQRIHTGEKSGPS 43
Score = 41.0 bits (97), Expect = 3e-05
Identities = 12/43 (27%), Positives = 16/43 (37%), Gaps = 1/43 (2%)
Query: 262 AHMFHHTGENGHTCELCNKTFNRKARLELHMKYIHEGADPYQC 304
+ TG+ C C K+F K L H + IH G
Sbjct: 2 SSGSSGTGQKPFECTHCGKSFRAKGNLVTHQR-IHTGEKSGPS 43
Score = 39.4 bits (93), Expect = 1e-04
Identities = 13/45 (28%), Positives = 18/45 (40%), Gaps = 5/45 (11%)
Query: 91 HLRAHAGETKRKKKFKCDKCEKQFYGLTLLRIHERLH-AEKLYEC 134
+ G+ K F+C C K F L H+R+H EK
Sbjct: 3 SGSSGTGQ----KPFECTHCGKSFRAKGNLVTHQRIHTGEKSGPS 43
Score = 34.1 bits (79), Expect = 0.008
Identities = 9/32 (28%), Positives = 15/32 (46%)
Query: 347 IHLLTHTKEPPKSCEVCGRAFIRQDCLIRHLR 378
+ T + P C CG++F + L+ H R
Sbjct: 2 SSGSSGTGQKPFECTHCGKSFRAKGNLVTHQR 33
Score = 31.7 bits (73), Expect = 0.048
Identities = 12/30 (40%), Positives = 13/30 (43%), Gaps = 4/30 (13%)
Query: 78 CGRVFNRKDNLREHLRAHAGETKRKKKFKC 107
CG+ F K NL H R H GE K
Sbjct: 18 CGKSFRAKGNLVTHQRIHTGE----KSGPS 43
>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A
Length = 46
Score = 59.5 bits (145), Expect = 1e-11
Identities = 14/47 (29%), Positives = 19/47 (40%), Gaps = 5/47 (10%)
Query: 149 KHRRKHTGERPYECKEVCGRVFNRKDNLREHLRAHAGETKRKKKFKC 195
TG +PY C + C + F+ K L H R+H G K
Sbjct: 2 SSGSSGTGVKPYGCSQ-CAKTFSLKSQLIVHQRSHTGV----KPSGP 43
Score = 51.0 bits (123), Expect = 8e-09
Identities = 16/42 (38%), Positives = 21/42 (50%)
Query: 319 RHCLLHTGVKPHKCPICTKGFTMKSSLKIHLLTHTKEPPKSC 360
TGVKP+ C C K F++KS L +H +HT P
Sbjct: 2 SSGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRSHTGVKPSGP 43
Score = 51.0 bits (123), Expect = 9e-09
Identities = 15/42 (35%), Positives = 18/42 (42%)
Query: 234 RHMKTHSGVKPHVCEYCEKAFIQASQLKAHMFHHTGENGHTC 275
+ +GVKP+ C C K F SQL H HTG
Sbjct: 2 SSGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRSHTGVKPSGP 43
Score = 49.5 bits (119), Expect = 3e-08
Identities = 11/41 (26%), Positives = 14/41 (34%), Gaps = 1/41 (2%)
Query: 123 HERLH-AEKLYECDICKNRFPSSGAMKKHRRKHTGERPYEC 162
K Y C C F + H+R HTG +P
Sbjct: 3 SGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRSHTGVKPSGP 43
Score = 49.1 bits (118), Expect = 4e-08
Identities = 17/38 (44%), Positives = 17/38 (44%)
Query: 295 IHEGADPYQCDICRKTFIRKEDLTRHCLLHTGVKPHKC 332
G PY C C KTF K L H HTGVKP
Sbjct: 6 SGTGVKPYGCSQCAKTFSLKSQLIVHQRSHTGVKPSGP 43
Score = 40.6 bits (96), Expect = 4e-05
Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Query: 267 HTGENGHTCELCNKTFNRKARLELHMKYIHEGADPYQC 304
TG + C C KTF+ K++L +H + H G P
Sbjct: 7 GTGVKPYGCSQCAKTFSLKSQLIVHQR-SHTGVKPSGP 43
Score = 34.0 bits (79), Expect = 0.008
Identities = 9/31 (29%), Positives = 12/31 (38%)
Query: 348 HLLTHTKEPPKSCEVCGRAFIRQDCLIRHLR 378
+ T P C C + F + LI H R
Sbjct: 3 SGSSGTGVKPYGCSQCAKTFSLKSQLIVHQR 33
Score = 30.6 bits (70), Expect = 0.15
Identities = 9/30 (30%), Positives = 12/30 (40%), Gaps = 4/30 (13%)
Query: 78 CGRVFNRKDNLREHLRAHAGETKRKKKFKC 107
C + F+ K L H R+H G K
Sbjct: 18 CAKTFSLKSQLIVHQRSHTGV----KPSGP 43
>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 59.0 bits (144), Expect = 1e-11
Identities = 16/47 (34%), Positives = 18/47 (38%), Gaps = 5/47 (10%)
Query: 149 KHRRKHTGERPYECKEVCGRVFNRKDNLREHLRAHAGETKRKKKFKC 195
TG +PY C E CG+ F K L H R H GE
Sbjct: 2 SSGSSGTGMKPYVCNE-CGKAFRSKSYLIIHTRTHTGE----SGPSS 43
Score = 52.9 bits (128), Expect = 2e-09
Identities = 17/42 (40%), Positives = 23/42 (54%)
Query: 234 RHMKTHSGVKPHVCEYCEKAFIQASQLKAHMFHHTGENGHTC 275
+ +G+KP+VC C KAF S L H HTGE+G +
Sbjct: 2 SSGSSGTGMKPYVCNECGKAFRSKSYLIIHTRTHTGESGPSS 43
Score = 49.8 bits (120), Expect = 2e-08
Identities = 18/42 (42%), Positives = 20/42 (47%)
Query: 319 RHCLLHTGVKPHKCPICTKGFTMKSSLKIHLLTHTKEPPKSC 360
TG+KP+ C C K F KS L IH THT E S
Sbjct: 2 SSGSSGTGMKPYVCNECGKAFRSKSYLIIHTRTHTGESGPSS 43
Score = 49.0 bits (118), Expect = 4e-08
Identities = 12/41 (29%), Positives = 14/41 (34%), Gaps = 1/41 (2%)
Query: 123 HERLH-AEKLYECDICKNRFPSSGAMKKHRRKHTGERPYEC 162
K Y C+ C F S + H R HTGE
Sbjct: 3 SGSSGTGMKPYVCNECGKAFRSKSYLIIHTRTHTGESGPSS 43
Score = 46.7 bits (112), Expect = 3e-07
Identities = 13/38 (34%), Positives = 14/38 (36%)
Query: 295 IHEGADPYQCDICRKTFIRKEDLTRHCLLHTGVKPHKC 332
G PY C+ C K F K L H HTG
Sbjct: 6 SGTGMKPYVCNECGKAFRSKSYLIIHTRTHTGESGPSS 43
Score = 40.2 bits (95), Expect = 6e-05
Identities = 12/45 (26%), Positives = 17/45 (37%), Gaps = 5/45 (11%)
Query: 91 HLRAHAGETKRKKKFKCDKCEKQFYGLTLLRIHERLH-AEKLYEC 134
+ G K + C++C K F + L IH R H E
Sbjct: 3 SGSSGTGM----KPYVCNECGKAFRSKSYLIIHTRTHTGESGPSS 43
Score = 39.0 bits (92), Expect = 1e-04
Identities = 11/38 (28%), Positives = 15/38 (39%), Gaps = 1/38 (2%)
Query: 267 HTGENGHTCELCNKTFNRKARLELHMKYIHEGADPYQC 304
TG + C C K F K+ L +H + H G
Sbjct: 7 GTGMKPYVCNECGKAFRSKSYLIIHTR-THTGESGPSS 43
Score = 33.2 bits (77), Expect = 0.017
Identities = 11/31 (35%), Positives = 14/31 (45%)
Query: 348 HLLTHTKEPPKSCEVCGRAFIRQDCLIRHLR 378
+ T P C CG+AF + LI H R
Sbjct: 3 SGSSGTGMKPYVCNECGKAFRSKSYLIIHTR 33
Score = 30.1 bits (69), Expect = 0.20
Identities = 10/30 (33%), Positives = 11/30 (36%), Gaps = 4/30 (13%)
Query: 78 CGRVFNRKDNLREHLRAHAGETKRKKKFKC 107
CG+ F K L H R H GE
Sbjct: 18 CGKAFRSKSYLIIHTRTHTGE----SGPSS 43
>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 59.4 bits (145), Expect = 1e-11
Identities = 13/47 (27%), Positives = 18/47 (38%), Gaps = 5/47 (10%)
Query: 150 HRRKHTGERPYECKEVCGRVFNRKDNLREHLRAHAGETKRKKKFKCD 196
TGE+P++C CG+ F + L H H E K
Sbjct: 3 SGSSGTGEKPFKCDI-CGKSFCGRSRLNRHSMVHTAE----KPSGPS 44
Score = 54.0 bits (131), Expect = 8e-10
Identities = 15/38 (39%), Positives = 21/38 (55%)
Query: 295 IHEGADPYQCDICRKTFIRKEDLTRHCLLHTGVKPHKC 332
G P++CDIC K+F + L RH ++HT KP
Sbjct: 6 SGTGEKPFKCDICGKSFCGRSRLNRHSMVHTAEKPSGP 43
Score = 50.6 bits (122), Expect = 1e-08
Identities = 12/41 (29%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Query: 123 HERLH-AEKLYECDICKNRFPSSGAMKKHRRKHTGERPYEC 162
EK ++CDIC F + +H HT E+P
Sbjct: 3 SGSSGTGEKPFKCDICGKSFCGRSRLNRHSMVHTAEKPSGP 43
Score = 49.8 bits (120), Expect = 2e-08
Identities = 13/42 (30%), Positives = 18/42 (42%)
Query: 235 HMKTHSGVKPHVCEYCEKAFIQASQLKAHMFHHTGENGHTCE 276
+ +G KP C+ C K+F S+L H HT E
Sbjct: 3 SGSSGTGEKPFKCDICGKSFCGRSRLNRHSMVHTAEKPSGPS 44
Score = 49.4 bits (119), Expect = 3e-08
Identities = 17/42 (40%), Positives = 19/42 (45%)
Query: 320 HCLLHTGVKPHKCPICTKGFTMKSSLKIHLLTHTKEPPKSCE 361
TG KP KC IC K F +S L H + HT E P
Sbjct: 3 SGSSGTGEKPFKCDICGKSFCGRSRLNRHSMVHTAEKPSGPS 44
Score = 41.3 bits (98), Expect = 2e-05
Identities = 12/44 (27%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
Query: 262 AHMFHHTGENGHTCELCNKTFNRKARLELHMKYIHEGADPYQCD 305
+ TGE C++C K+F ++RL H +H P
Sbjct: 2 SSGSSGTGEKPFKCDICGKSFCGRSRLNRHSM-VHTAEKPSGPS 44
Score = 40.9 bits (97), Expect = 3e-05
Identities = 17/46 (36%), Positives = 20/46 (43%), Gaps = 5/46 (10%)
Query: 91 HLRAHAGETKRKKKFKCDKCEKQFYGLTLLRIHERLH-AEKLYECD 135
+ GE K FKCD C K F G + L H +H AEK
Sbjct: 3 SGSSGTGE----KPFKCDICGKSFCGRSRLNRHSMVHTAEKPSGPS 44
Score = 35.9 bits (84), Expect = 0.002
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 348 HLLTHTKEPPKSCEVCGRAFIRQDCLIRHLR 378
+ T E P C++CG++F + L RH
Sbjct: 3 SGSSGTGEKPFKCDICGKSFCGRSRLNRHSM 33
Score = 35.9 bits (84), Expect = 0.002
Identities = 17/70 (24%), Positives = 20/70 (28%), Gaps = 28/70 (40%)
Query: 179 HLRAHAGETKRKKKFKCDKCEKQFYGLTLLRIHERLHGLIERTCYARFAAKETLNRHMKT 238
+ GE K FKCD C K F + LNRH
Sbjct: 3 SGSSGTGE----KPFKCDICGKSF------------------------CGRSRLNRHSMV 34
Query: 239 HSGVKPHVCE 248
H+ KP
Sbjct: 35 HTAEKPSGPS 44
Score = 32.1 bits (74), Expect = 0.037
Identities = 8/33 (24%), Positives = 11/33 (33%), Gaps = 4/33 (12%)
Query: 76 KVCGRVFNRKDNLREHLRAHAGETKRKKKFKCD 108
+CG+ F + L H H E K
Sbjct: 16 DICGKSFCGRSRLNRHSMVHTAE----KPSGPS 44
>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 59.4 bits (145), Expect = 1e-11
Identities = 17/46 (36%), Positives = 21/46 (45%), Gaps = 5/46 (10%)
Query: 150 HRRKHTGERPYECKEVCGRVFNRKDNLREHLRAHAGETKRKKKFKC 195
TGE+PY C E CG+ F + NL H + H GE K
Sbjct: 3 SGSSGTGEKPYRCAE-CGKAFTDRSNLFTHQKIHTGE----KPSGP 43
Score = 48.7 bits (117), Expect = 5e-08
Identities = 16/43 (37%), Positives = 20/43 (46%)
Query: 319 RHCLLHTGVKPHKCPICTKGFTMKSSLKIHLLTHTKEPPKSCE 361
TG KP++C C K FT +S+L H HT E P
Sbjct: 2 SSGSSGTGEKPYRCAECGKAFTDRSNLFTHQKIHTGEKPSGPS 44
Score = 48.7 bits (117), Expect = 5e-08
Identities = 15/43 (34%), Positives = 18/43 (41%)
Query: 234 RHMKTHSGVKPHVCEYCEKAFIQASQLKAHMFHHTGENGHTCE 276
+ +G KP+ C C KAF S L H HTGE
Sbjct: 2 SSGSSGTGEKPYRCAECGKAFTDRSNLFTHQKIHTGEKPSGPS 44
Score = 48.3 bits (116), Expect = 7e-08
Identities = 12/41 (29%), Positives = 16/41 (39%), Gaps = 1/41 (2%)
Query: 123 HERLH-AEKLYECDICKNRFPSSGAMKKHRRKHTGERPYEC 162
EK Y C C F + H++ HTGE+P
Sbjct: 3 SGSSGTGEKPYRCAECGKAFTDRSNLFTHQKIHTGEKPSGP 43
Score = 47.9 bits (115), Expect = 1e-07
Identities = 14/38 (36%), Positives = 18/38 (47%)
Query: 295 IHEGADPYQCDICRKTFIRKEDLTRHCLLHTGVKPHKC 332
G PY+C C K F + +L H +HTG KP
Sbjct: 6 SGTGEKPYRCAECGKAFTDRSNLFTHQKIHTGEKPSGP 43
Score = 39.4 bits (93), Expect = 1e-04
Identities = 14/38 (36%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Query: 267 HTGENGHTCELCNKTFNRKARLELHMKYIHEGADPYQC 304
TGE + C C K F ++ L H K IH G P
Sbjct: 7 GTGEKPYRCAECGKAFTDRSNLFTHQK-IHTGEKPSGP 43
Score = 37.9 bits (89), Expect = 3e-04
Identities = 12/45 (26%), Positives = 20/45 (44%), Gaps = 5/45 (11%)
Query: 91 HLRAHAGETKRKKKFKCDKCEKQFYGLTLLRIHERLH-AEKLYEC 134
+ GE K ++C +C K F + L H+++H EK
Sbjct: 3 SGSSGTGE----KPYRCAECGKAFTDRSNLFTHQKIHTGEKPSGP 43
Score = 34.0 bits (79), Expect = 0.010
Identities = 10/31 (32%), Positives = 14/31 (45%)
Query: 348 HLLTHTKEPPKSCEVCGRAFIRQDCLIRHLR 378
+ T E P C CG+AF + L H +
Sbjct: 3 SGSSGTGEKPYRCAECGKAFTDRSNLFTHQK 33
Score = 31.3 bits (72), Expect = 0.077
Identities = 10/30 (33%), Positives = 13/30 (43%), Gaps = 4/30 (13%)
Query: 78 CGRVFNRKDNLREHLRAHAGETKRKKKFKC 107
CG+ F + NL H + H GE K
Sbjct: 18 CGKAFTDRSNLFTHQKIHTGE----KPSGP 43
>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 59.1 bits (144), Expect = 1e-11
Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 5/47 (10%)
Query: 150 HRRKHTGERPYECKEVCGRVFNRKDNLREHLRAHAGETKRKKKFKCD 196
+GE+P++C+E CG+ F H R+H+GE K
Sbjct: 3 SGSSGSGEKPFKCEE-CGKGFYTNSQCYSHQRSHSGE----KPSGPS 44
Score = 49.9 bits (120), Expect = 2e-08
Identities = 15/45 (33%), Positives = 18/45 (40%), Gaps = 1/45 (2%)
Query: 320 HCLLHTGVKPHKCPICTKGFTMKSSLKIHLLTHTKEPPKSCEVCG 364
+G KP KC C KGF S H +H+ E P G
Sbjct: 3 SGSSGSGEKPFKCEECGKGFYTNSQCYSHQRSHSGEKPSGPS-SG 46
Score = 49.5 bits (119), Expect = 3e-08
Identities = 15/42 (35%), Positives = 18/42 (42%)
Query: 235 HMKTHSGVKPHVCEYCEKAFIQASQLKAHMFHHTGENGHTCE 276
+ SG KP CE C K F SQ +H H+GE
Sbjct: 3 SGSSGSGEKPFKCEECGKGFYTNSQCYSHQRSHSGEKPSGPS 44
Score = 49.1 bits (118), Expect = 3e-08
Identities = 12/46 (26%), Positives = 20/46 (43%), Gaps = 3/46 (6%)
Query: 123 HERLH-AEKLYECDICKNRFPSSGAMKKHRRKHTGERPYECKEVCG 167
EK ++C+ C F ++ H+R H+GE+P G
Sbjct: 3 SGSSGSGEKPFKCEECGKGFYTNSQCYSHQRSHSGEKPSGPS--SG 46
Score = 47.2 bits (113), Expect = 2e-07
Identities = 11/38 (28%), Positives = 15/38 (39%)
Query: 295 IHEGADPYQCDICRKTFIRKEDLTRHCLLHTGVKPHKC 332
G P++C+ C K F H H+G KP
Sbjct: 6 SGSGEKPFKCEECGKGFYTNSQCYSHQRSHSGEKPSGP 43
Score = 38.7 bits (91), Expect = 2e-04
Identities = 11/44 (25%), Positives = 16/44 (36%), Gaps = 1/44 (2%)
Query: 262 AHMFHHTGENGHTCELCNKTFNRKARLELHMKYIHEGADPYQCD 305
+ +GE CE C K F ++ H + H G P
Sbjct: 2 SSGSSGSGEKPFKCEECGKGFYTNSQCYSHQR-SHSGEKPSGPS 44
Score = 35.6 bits (83), Expect = 0.003
Identities = 9/31 (29%), Positives = 12/31 (38%)
Query: 348 HLLTHTKEPPKSCEVCGRAFIRQDCLIRHLR 378
+ + E P CE CG+ F H R
Sbjct: 3 SGSSGSGEKPFKCEECGKGFYTNSQCYSHQR 33
Score = 34.1 bits (79), Expect = 0.009
Identities = 17/70 (24%), Positives = 24/70 (34%), Gaps = 28/70 (40%)
Query: 179 HLRAHAGETKRKKKFKCDKCEKQFYGLTLLRIHERLHGLIERTCYARFAAKETLNRHMKT 238
+ +GE K FKC++C K FY + H+R +
Sbjct: 3 SGSSGSGE----KPFKCEECGKGFYTNSQCYSHQR------------------------S 34
Query: 239 HSGVKPHVCE 248
HSG KP
Sbjct: 35 HSGEKPSGPS 44
Score = 32.1 bits (74), Expect = 0.047
Identities = 9/31 (29%), Positives = 12/31 (38%), Gaps = 4/31 (12%)
Query: 78 CGRVFNRKDNLREHLRAHAGETKRKKKFKCD 108
CG+ F H R+H+GE K
Sbjct: 18 CGKGFYTNSQCYSHQRSHSGE----KPSGPS 44
>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 59.1 bits (144), Expect = 1e-11
Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 5/47 (10%)
Query: 149 KHRRKHTGERPYECKEVCGRVFNRKDNLREHLRAHAGETKRKKKFKC 195
TGE+PY+C+ CG+ F +L +H H+GE +
Sbjct: 2 SSGSSGTGEKPYKCQV-CGKAFRVSSHLVQHHSVHSGE----RPSGP 43
Score = 50.2 bits (121), Expect = 2e-08
Identities = 12/38 (31%), Positives = 18/38 (47%)
Query: 295 IHEGADPYQCDICRKTFIRKEDLTRHCLLHTGVKPHKC 332
G PY+C +C K F L +H +H+G +P
Sbjct: 6 SGTGEKPYKCQVCGKAFRVSSHLVQHHSVHSGERPSGP 43
Score = 49.8 bits (120), Expect = 2e-08
Identities = 13/41 (31%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Query: 123 HERLH-AEKLYECDICKNRFPSSGAMKKHRRKHTGERPYEC 162
EK Y+C +C F S + +H H+GERP
Sbjct: 3 SGSSGTGEKPYKCQVCGKAFRVSSHLVQHHSVHSGERPSGP 43
Score = 46.4 bits (111), Expect = 3e-07
Identities = 14/42 (33%), Positives = 20/42 (47%)
Query: 234 RHMKTHSGVKPHVCEYCEKAFIQASQLKAHMFHHTGENGHTC 275
+ +G KP+ C+ C KAF +S L H H+GE
Sbjct: 2 SSGSSGTGEKPYKCQVCGKAFRVSSHLVQHHSVHSGERPSGP 43
Score = 44.4 bits (106), Expect = 2e-06
Identities = 15/42 (35%), Positives = 19/42 (45%)
Query: 319 RHCLLHTGVKPHKCPICTKGFTMKSSLKIHLLTHTKEPPKSC 360
TG KP+KC +C K F + S L H H+ E P
Sbjct: 2 SSGSSGTGEKPYKCQVCGKAFRVSSHLVQHHSVHSGERPSGP 43
Score = 39.8 bits (94), Expect = 9e-05
Identities = 12/38 (31%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Query: 267 HTGENGHTCELCNKTFNRKARLELHMKYIHEGADPYQC 304
TGE + C++C K F + L H +H G P
Sbjct: 7 GTGEKPYKCQVCGKAFRVSSHLVQHHS-VHSGERPSGP 43
Score = 36.0 bits (84), Expect = 0.002
Identities = 13/37 (35%), Positives = 18/37 (48%), Gaps = 4/37 (10%)
Query: 348 HLLTHTKEPPKSCEVCGRAFIRQDCLIRHLRQKHRSH 384
+ T E P C+VCG+AF L++H H H
Sbjct: 3 SGSSGTGEKPYKCQVCGKAFRVSSHLVQH----HSVH 35
Score = 31.3 bits (72), Expect = 0.071
Identities = 9/32 (28%), Positives = 15/32 (46%), Gaps = 4/32 (12%)
Query: 76 KVCGRVFNRKDNLREHLRAHAGETKRKKKFKC 107
+VCG+ F +L +H H+GE +
Sbjct: 16 QVCGKAFRVSSHLVQHHSVHSGE----RPSGP 43
>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 59.1 bits (144), Expect = 1e-11
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 5/47 (10%)
Query: 149 KHRRKHTGERPYECKEVCGRVFNRKDNLREHLRAHAGETKRKKKFKC 195
+GE+P++C+E CG+ F + +L H R H GE K
Sbjct: 2 SSGSSGSGEKPFQCEE-CGKRFTQNSHLHSHQRVHTGE----KPSGP 43
Score = 49.5 bits (119), Expect = 3e-08
Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Query: 123 HERLH-AEKLYECDICKNRFPSSGAMKKHRRKHTGERPYEC 162
EK ++C+ C RF + + H+R HTGE+P
Sbjct: 3 SGSSGSGEKPFQCEECGKRFTQNSHLHSHQRVHTGEKPSGP 43
Score = 48.7 bits (117), Expect = 6e-08
Identities = 14/38 (36%), Positives = 18/38 (47%)
Query: 295 IHEGADPYQCDICRKTFIRKEDLTRHCLLHTGVKPHKC 332
G P+QC+ C K F + L H +HTG KP
Sbjct: 6 SGSGEKPFQCEECGKRFTQNSHLHSHQRVHTGEKPSGP 43
Score = 48.7 bits (117), Expect = 6e-08
Identities = 17/42 (40%), Positives = 19/42 (45%)
Query: 234 RHMKTHSGVKPHVCEYCEKAFIQASQLKAHMFHHTGENGHTC 275
+ SG KP CE C K F Q S L +H HTGE
Sbjct: 2 SSGSSGSGEKPFQCEECGKRFTQNSHLHSHQRVHTGEKPSGP 43
Score = 47.9 bits (115), Expect = 1e-07
Identities = 15/42 (35%), Positives = 17/42 (40%)
Query: 319 RHCLLHTGVKPHKCPICTKGFTMKSSLKIHLLTHTKEPPKSC 360
+G KP +C C K FT S L H HT E P
Sbjct: 2 SSGSSGSGEKPFQCEECGKRFTQNSHLHSHQRVHTGEKPSGP 43
Score = 40.6 bits (96), Expect = 3e-05
Identities = 12/42 (28%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Query: 263 HMFHHTGENGHTCELCNKTFNRKARLELHMKYIHEGADPYQC 304
+GE CE C K F + + L H + +H G P
Sbjct: 3 SGSSGSGEKPFQCEECGKRFTQNSHLHSHQR-VHTGEKPSGP 43
Score = 39.1 bits (92), Expect = 2e-04
Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 5/46 (10%)
Query: 90 EHLRAHAGETKRKKKFKCDKCEKQFYGLTLLRIHERLH-AEKLYEC 134
+ +GE K F+C++C K+F + L H+R+H EK
Sbjct: 2 SSGSSGSGE----KPFQCEECGKRFTQNSHLHSHQRVHTGEKPSGP 43
Score = 33.3 bits (77), Expect = 0.015
Identities = 10/31 (32%), Positives = 14/31 (45%)
Query: 348 HLLTHTKEPPKSCEVCGRAFIRQDCLIRHLR 378
+ + E P CE CG+ F + L H R
Sbjct: 3 SGSSGSGEKPFQCEECGKRFTQNSHLHSHQR 33
Score = 31.0 bits (71), Expect = 0.11
Identities = 10/30 (33%), Positives = 13/30 (43%), Gaps = 4/30 (13%)
Query: 78 CGRVFNRKDNLREHLRAHAGETKRKKKFKC 107
CG+ F + +L H R H GE K
Sbjct: 18 CGKRFTQNSHLHSHQRVHTGE----KPSGP 43
>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 59.1 bits (144), Expect = 1e-11
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 5/47 (10%)
Query: 149 KHRRKHTGERPYECKEVCGRVFNRKDNLREHLRAHAGETKRKKKFKC 195
TGE+PYEC CG+ F+ + +L H R H+G+ K
Sbjct: 2 SSGSSGTGEKPYECSV-CGKAFSHRQSLSVHQRIHSGK----KPSGP 43
Score = 51.0 bits (123), Expect = 8e-09
Identities = 12/42 (28%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 122 IHERLH-AEKLYECDICKNRFPSSGAMKKHRRKHTGERPYEC 162
EK YEC +C F ++ H+R H+G++P
Sbjct: 2 SSGSSGTGEKPYECSVCGKAFSHRQSLSVHQRIHSGKKPSGP 43
Score = 47.9 bits (115), Expect = 9e-08
Identities = 12/43 (27%), Positives = 17/43 (39%)
Query: 234 RHMKTHSGVKPHVCEYCEKAFIQASQLKAHMFHHTGENGHTCE 276
+ +G KP+ C C KAF L H H+G+
Sbjct: 2 SSGSSGTGEKPYECSVCGKAFSHRQSLSVHQRIHSGKKPSGPS 44
Score = 47.9 bits (115), Expect = 1e-07
Identities = 13/43 (30%), Positives = 21/43 (48%)
Query: 319 RHCLLHTGVKPHKCPICTKGFTMKSSLKIHLLTHTKEPPKSCE 361
TG KP++C +C K F+ + SL +H H+ + P
Sbjct: 2 SSGSSGTGEKPYECSVCGKAFSHRQSLSVHQRIHSGKKPSGPS 44
Score = 46.7 bits (112), Expect = 3e-07
Identities = 13/38 (34%), Positives = 20/38 (52%)
Query: 295 IHEGADPYQCDICRKTFIRKEDLTRHCLLHTGVKPHKC 332
G PY+C +C K F ++ L+ H +H+G KP
Sbjct: 6 SGTGEKPYECSVCGKAFSHRQSLSVHQRIHSGKKPSGP 43
Score = 39.4 bits (93), Expect = 9e-05
Identities = 13/42 (30%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 263 HMFHHTGENGHTCELCNKTFNRKARLELHMKYIHEGADPYQC 304
TGE + C +C K F+ + L +H + IH G P
Sbjct: 3 SGSSGTGEKPYECSVCGKAFSHRQSLSVHQR-IHSGKKPSGP 43
Score = 39.0 bits (92), Expect = 1e-04
Identities = 12/45 (26%), Positives = 19/45 (42%), Gaps = 5/45 (11%)
Query: 91 HLRAHAGETKRKKKFKCDKCEKQFYGLTLLRIHERLH-AEKLYEC 134
+ GE K ++C C K F L +H+R+H +K
Sbjct: 3 SGSSGTGE----KPYECSVCGKAFSHRQSLSVHQRIHSGKKPSGP 43
Score = 33.6 bits (78), Expect = 0.012
Identities = 12/32 (37%), Positives = 15/32 (46%)
Query: 347 IHLLTHTKEPPKSCEVCGRAFIRQDCLIRHLR 378
+ T E P C VCG+AF + L H R
Sbjct: 2 SSGSSGTGEKPYECSVCGKAFSHRQSLSVHQR 33
Score = 30.6 bits (70), Expect = 0.17
Identities = 10/32 (31%), Positives = 16/32 (50%), Gaps = 4/32 (12%)
Query: 76 KVCGRVFNRKDNLREHLRAHAGETKRKKKFKC 107
VCG+ F+ + +L H R H+G+ K
Sbjct: 16 SVCGKAFSHRQSLSVHQRIHSGK----KPSGP 43
>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 59.1 bits (144), Expect = 1e-11
Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 5/47 (10%)
Query: 149 KHRRKHTGERPYECKEVCGRVFNRKDNLREHLRAHAGETKRKKKFKC 195
TGE+PY+C E CG+VF + +L H H GE K
Sbjct: 2 SSGSSGTGEKPYKCNE-CGKVFTQNSHLARHRGIHTGE----KPSGP 43
Score = 49.4 bits (119), Expect = 3e-08
Identities = 15/38 (39%), Positives = 19/38 (50%)
Query: 295 IHEGADPYQCDICRKTFIRKEDLTRHCLLHTGVKPHKC 332
G PY+C+ C K F + L RH +HTG KP
Sbjct: 6 SGTGEKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGP 43
Score = 48.3 bits (116), Expect = 8e-08
Identities = 13/41 (31%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Query: 123 HERLH-AEKLYECDICKNRFPSSGAMKKHRRKHTGERPYEC 162
EK Y+C+ C F + + +HR HTGE+P
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGP 43
Score = 46.3 bits (111), Expect = 3e-07
Identities = 15/42 (35%), Positives = 18/42 (42%)
Query: 235 HMKTHSGVKPHVCEYCEKAFIQASQLKAHMFHHTGENGHTCE 276
+ +G KP+ C C K F Q S L H HTGE
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPS 44
Score = 44.4 bits (106), Expect = 2e-06
Identities = 17/42 (40%), Positives = 18/42 (42%)
Query: 320 HCLLHTGVKPHKCPICTKGFTMKSSLKIHLLTHTKEPPKSCE 361
TG KP+KC C K FT S L H HT E P
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPS 44
Score = 40.2 bits (95), Expect = 5e-05
Identities = 13/43 (30%), Positives = 17/43 (39%), Gaps = 1/43 (2%)
Query: 262 AHMFHHTGENGHTCELCNKTFNRKARLELHMKYIHEGADPYQC 304
+ TGE + C C K F + + L H IH G P
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLARHRG-IHTGEKPSGP 43
Score = 37.9 bits (89), Expect = 4e-04
Identities = 13/45 (28%), Positives = 19/45 (42%), Gaps = 5/45 (11%)
Query: 91 HLRAHAGETKRKKKFKCDKCEKQFYGLTLLRIHERLH-AEKLYEC 134
+ GE K +KC++C K F + L H +H EK
Sbjct: 3 SGSSGTGE----KPYKCNECGKVFTQNSHLARHRGIHTGEKPSGP 43
Score = 34.0 bits (79), Expect = 0.008
Identities = 10/31 (32%), Positives = 13/31 (41%)
Query: 348 HLLTHTKEPPKSCEVCGRAFIRQDCLIRHLR 378
+ T E P C CG+ F + L RH
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRG 33
Score = 29.8 bits (68), Expect = 0.31
Identities = 10/30 (33%), Positives = 13/30 (43%), Gaps = 4/30 (13%)
Query: 78 CGRVFNRKDNLREHLRAHAGETKRKKKFKC 107
CG+VF + +L H H GE K
Sbjct: 18 CGKVFTQNSHLARHRGIHTGE----KPSGP 43
>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 59.1 bits (144), Expect = 1e-11
Identities = 18/46 (39%), Positives = 21/46 (45%), Gaps = 5/46 (10%)
Query: 150 HRRKHTGERPYECKEVCGRVFNRKDNLREHLRAHAGETKRKKKFKC 195
TGE+PY+C E CG+VF L H R H GE K
Sbjct: 3 SGSSGTGEKPYKCNE-CGKVFRHNSYLSRHQRIHTGE----KPSGP 43
Score = 49.0 bits (118), Expect = 4e-08
Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 123 HERLHA-EKLYECDICKNRFPSSGAMKKHRRKHTGERPYECKE 164
EK Y+C+ C F + + +H+R HTGE+P
Sbjct: 3 SGSSGTGEKPYKCNECGKVFRHNSYLSRHQRIHTGEKPSGPSS 45
Score = 49.0 bits (118), Expect = 5e-08
Identities = 15/38 (39%), Positives = 19/38 (50%)
Query: 295 IHEGADPYQCDICRKTFIRKEDLTRHCLLHTGVKPHKC 332
G PY+C+ C K F L+RH +HTG KP
Sbjct: 6 SGTGEKPYKCNECGKVFRHNSYLSRHQRIHTGEKPSGP 43
Score = 47.1 bits (113), Expect = 2e-07
Identities = 16/43 (37%), Positives = 17/43 (39%)
Query: 319 RHCLLHTGVKPHKCPICTKGFTMKSSLKIHLLTHTKEPPKSCE 361
TG KP+KC C K F S L H HT E P
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFRHNSYLSRHQRIHTGEKPSGPS 44
Score = 47.1 bits (113), Expect = 2e-07
Identities = 14/43 (32%), Positives = 17/43 (39%)
Query: 234 RHMKTHSGVKPHVCEYCEKAFIQASQLKAHMFHHTGENGHTCE 276
+ +G KP+ C C K F S L H HTGE
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFRHNSYLSRHQRIHTGEKPSGPS 44
Score = 39.0 bits (92), Expect = 1e-04
Identities = 13/42 (30%), Positives = 16/42 (38%), Gaps = 1/42 (2%)
Query: 263 HMFHHTGENGHTCELCNKTFNRKARLELHMKYIHEGADPYQC 304
TGE + C C K F + L H + IH G P
Sbjct: 3 SGSSGTGEKPYKCNECGKVFRHNSYLSRHQR-IHTGEKPSGP 43
Score = 35.2 bits (82), Expect = 0.004
Identities = 11/31 (35%), Positives = 13/31 (41%)
Query: 348 HLLTHTKEPPKSCEVCGRAFIRQDCLIRHLR 378
+ T E P C CG+ F L RH R
Sbjct: 3 SGSSGTGEKPYKCNECGKVFRHNSYLSRHQR 33
Score = 31.7 bits (73), Expect = 0.066
Identities = 11/30 (36%), Positives = 12/30 (40%), Gaps = 4/30 (13%)
Query: 78 CGRVFNRKDNLREHLRAHAGETKRKKKFKC 107
CG+VF L H R H GE K
Sbjct: 18 CGKVFRHNSYLSRHQRIHTGE----KPSGP 43
>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}
Length = 129
Score = 61.9 bits (149), Expect = 1e-11
Identities = 24/111 (21%), Positives = 37/111 (33%), Gaps = 9/111 (8%)
Query: 279 NKTFNRKARLELHMKY---IHEGADPYQCD----ICRKTFIRKEDLTRHCLLHTGVKPHK 331
+K LE +Y E + I + + L +
Sbjct: 17 HKGIFIHVTLEELKRYHQLTPEQKRLIRAIVKTLIHNPQLLDESSYLYRLLASKAISQFV 76
Query: 332 CPICTKGFTMKSSLKIHLLTHTKEPPKSCEVCGRAFIRQDCLIRHLRQKHR 382
CP+C F+ SLK H+ K C VC + F D + H+ +KH
Sbjct: 77 CPLCLMPFSSSVSLKQHIRYTEH--TKVCPVCKKEFTSTDSALDHVCKKHN 125
Score = 49.9 bits (118), Expect = 2e-07
Identities = 22/99 (22%), Positives = 37/99 (37%), Gaps = 8/99 (8%)
Query: 88 LREHLRAHAGETKRKKKFKCD-----KCEKQFYGLTLLRIHERLHAEKLYECDICKNRFP 142
L E R H ++K+ + + + L A + C +C F
Sbjct: 26 LEELKRYHQLTPEQKRLIRAIVKTLIHNPQLLDESSYLYRLLASKAISQFVCPLCLMPFS 85
Query: 143 SSGAMKKHRRKHTGERPYECKEVCGRVFNRKDNLREHLR 181
SS ++K+H R E C VC + F D+ +H+
Sbjct: 86 SSVSLKQHIRYT--EHTKVC-PVCKKEFTSTDSALDHVC 121
Score = 47.6 bits (112), Expect = 1e-06
Identities = 18/89 (20%), Positives = 30/89 (33%), Gaps = 4/89 (4%)
Query: 212 ERLHGLIERTCYAR--FAAKETLNRHMKTHSGVKPHVCEYCEKAFIQASQLKAHMFHHTG 269
+RL I +T + + + + VC C F + LK H+ +
Sbjct: 40 KRLIRAIVKTLIHNPQLLDESSYLYRLLASKAISQFVCPLCLMPFSSSVSLKQHIRYT-- 97
Query: 270 ENGHTCELCNKTFNRKARLELHMKYIHEG 298
E+ C +C K F H+ H
Sbjct: 98 EHTKVCPVCKKEFTSTDSALDHVCKKHNI 126
Score = 40.7 bits (94), Expect = 3e-04
Identities = 14/81 (17%), Positives = 22/81 (27%), Gaps = 4/81 (4%)
Query: 307 CRKTFIRKEDLTRHCLLHTGVKPHKC----PICTKGFTMKSSLKIHLLTHTKEPPKSCEV 362
+E H L + + I +SS LL C +
Sbjct: 20 IFIHVTLEELKRYHQLTPEQKRLIRAIVKTLIHNPQLLDESSYLYRLLASKAISQFVCPL 79
Query: 363 CGRAFIRQDCLIRHLRQKHRS 383
C F L +H+R +
Sbjct: 80 CLMPFSSSVSLKQHIRYTEHT 100
Score = 40.3 bits (93), Expect = 4e-04
Identities = 16/98 (16%), Positives = 30/98 (30%), Gaps = 12/98 (12%)
Query: 119 LLRIHERL-HAEKLYECD----ICKNRFPSSGAMKKHRRKHTGERPYECKEVCGRVFNRK 173
L R H+ ++L I + + + C +C F+
Sbjct: 29 LKRYHQLTPEQKRLIRAIVKTLIHNPQLLDESSYLYRLLASKAISQFVCP-LCLMPFSSS 87
Query: 174 DNLREHLRAHAGETKRKKKFKCDKCEKQFYGLTLLRIH 211
+L++H+R C C+K+F H
Sbjct: 88 VSLKQHIRYTEHT------KVCPVCKKEFTSTDSALDH 119
Score = 33.4 bits (75), Expect = 0.11
Identities = 12/59 (20%), Positives = 23/59 (38%), Gaps = 4/59 (6%)
Query: 35 VGEKTVPGHLCKGCYRIFTSQGYMLLSYKSKEEEKQICTYIKVCGRVFNRKDNLREHLR 93
+ K + +C C F+S + + E K +C C + F D+ +H+
Sbjct: 67 LASKAISQFVCPLCLMPFSSSVSLKQHIRYTEHTK-VCPV---CKKEFTSTDSALDHVC 121
Score = 33.0 bits (74), Expect = 0.13
Identities = 14/70 (20%), Positives = 25/70 (35%), Gaps = 9/70 (12%)
Query: 54 SQGYMLLSYKSKEEEKQICTYIKVCGRVFNRKDNLREHLRAHAGETKRKKKFKCDKCEKQ 113
Y+ SK + +C +C F+ +L++H+R C C+K+
Sbjct: 59 ESSYLYRLLASKAISQFVC---PLCLMPFSSSVSLKQHIRYTEHT------KVCPVCKKE 109
Query: 114 FYGLTLLRIH 123
F H
Sbjct: 110 FTSTDSALDH 119
>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 58.7 bits (143), Expect = 1e-11
Identities = 11/39 (28%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
Query: 149 KHRRKHTGERPYECKEVCGRVFNRKDNLREHLRAHAGET 187
T + Y C E CG+ F R +L H + H ++
Sbjct: 2 SSGSSGTDSKSYNCNE-CGKAFTRIFHLTRHQKIHTRKS 39
Score = 49.1 bits (118), Expect = 4e-08
Identities = 11/41 (26%), Positives = 18/41 (43%)
Query: 235 HMKTHSGVKPHVCEYCEKAFIQASQLKAHMFHHTGENGHTC 275
+ + K + C C KAF + L H HT ++G +
Sbjct: 3 SGSSGTDSKSYNCNECGKAFTRIFHLTRHQKIHTRKSGPSS 43
Score = 43.0 bits (102), Expect = 6e-06
Identities = 12/41 (29%), Positives = 15/41 (36%)
Query: 320 HCLLHTGVKPHKCPICTKGFTMKSSLKIHLLTHTKEPPKSC 360
T K + C C K FT L H HT++ S
Sbjct: 3 SGSSGTDSKSYNCNECGKAFTRIFHLTRHQKIHTRKSGPSS 43
Score = 41.4 bits (98), Expect = 2e-05
Identities = 12/42 (28%), Positives = 15/42 (35%), Gaps = 1/42 (2%)
Query: 291 HMKYIHEGADPYQCDICRKTFIRKEDLTRHCLLHTGVKPHKC 332
+ Y C+ C K F R LTRH +HT
Sbjct: 3 SGS-SGTDSKSYNCNECGKAFTRIFHLTRHQKIHTRKSGPSS 43
Score = 37.2 bits (87), Expect = 6e-04
Identities = 11/42 (26%), Positives = 12/42 (28%), Gaps = 1/42 (2%)
Query: 263 HMFHHTGENGHTCELCNKTFNRKARLELHMKYIHEGADPYQC 304
T + C C K F R L H K IH
Sbjct: 3 SGSSGTDSKSYNCNECGKAFTRIFHLTRHQK-IHTRKSGPSS 43
Score = 36.8 bits (86), Expect = 0.001
Identities = 8/41 (19%), Positives = 14/41 (34%), Gaps = 1/41 (2%)
Query: 123 HERLHA-EKLYECDICKNRFPSSGAMKKHRRKHTGERPYEC 162
K Y C+ C F + +H++ HT +
Sbjct: 3 SGSSGTDSKSYNCNECGKAFTRIFHLTRHQKIHTRKSGPSS 43
Score = 34.5 bits (80), Expect = 0.005
Identities = 10/31 (32%), Positives = 14/31 (45%)
Query: 348 HLLTHTKEPPKSCEVCGRAFIRQDCLIRHLR 378
+ T +C CG+AF R L RH +
Sbjct: 3 SGSSGTDSKSYNCNECGKAFTRIFHLTRHQK 33
Score = 31.0 bits (71), Expect = 0.12
Identities = 7/22 (31%), Positives = 12/22 (54%)
Query: 78 CGRVFNRKDNLREHLRAHAGET 99
CG+ F R +L H + H ++
Sbjct: 18 CGKAFTRIFHLTRHQKIHTRKS 39
Score = 30.6 bits (70), Expect = 0.16
Identities = 8/46 (17%), Positives = 17/46 (36%), Gaps = 5/46 (10%)
Query: 90 EHLRAHAGETKRKKKFKCDKCEKQFYGLTLLRIHERLH-AEKLYEC 134
+ K + C++C K F + L H+++H +
Sbjct: 2 SSGSSGTDS----KSYNCNECGKAFTRIFHLTRHQKIHTRKSGPSS 43
>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 58.7 bits (143), Expect = 1e-11
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 5/47 (10%)
Query: 149 KHRRKHTGERPYECKEVCGRVFNRKDNLREHLRAHAGETKRKKKFKC 195
+GERP++C E CG+ F R+ +L HLR H+ E K
Sbjct: 2 SSGSSGSGERPFKCNE-CGKGFGRRSHLAGHLRLHSRE----KSSGP 43
Score = 48.3 bits (116), Expect = 9e-08
Identities = 12/42 (28%), Positives = 17/42 (40%)
Query: 234 RHMKTHSGVKPHVCEYCEKAFIQASQLKAHMFHHTGENGHTC 275
+ SG +P C C K F + S L H+ H+ E
Sbjct: 2 SSGSSGSGERPFKCNECGKGFGRRSHLAGHLRLHSREKSSGP 43
Score = 47.9 bits (115), Expect = 1e-07
Identities = 12/38 (31%), Positives = 17/38 (44%)
Query: 295 IHEGADPYQCDICRKTFIRKEDLTRHCLLHTGVKPHKC 332
G P++C+ C K F R+ L H LH+ K
Sbjct: 6 SGSGERPFKCNECGKGFGRRSHLAGHLRLHSREKSSGP 43
Score = 47.5 bits (114), Expect = 1e-07
Identities = 14/42 (33%), Positives = 19/42 (45%)
Query: 319 RHCLLHTGVKPHKCPICTKGFTMKSSLKIHLLTHTKEPPKSC 360
+G +P KC C KGF +S L HL H++E
Sbjct: 2 SSGSSGSGERPFKCNECGKGFGRRSHLAGHLRLHSREKSSGP 43
Score = 46.0 bits (110), Expect = 5e-07
Identities = 8/41 (19%), Positives = 16/41 (39%), Gaps = 1/41 (2%)
Query: 123 HERLHA-EKLYECDICKNRFPSSGAMKKHRRKHTGERPYEC 162
+ E+ ++C+ C F + H R H+ E+
Sbjct: 3 SGSSGSGERPFKCNECGKGFGRRSHLAGHLRLHSREKSSGP 43
Score = 41.0 bits (97), Expect = 3e-05
Identities = 10/38 (26%), Positives = 16/38 (42%), Gaps = 1/38 (2%)
Query: 267 HTGENGHTCELCNKTFNRKARLELHMKYIHEGADPYQC 304
+GE C C K F R++ L H++ +H
Sbjct: 7 GSGERPFKCNECGKGFGRRSHLAGHLR-LHSREKSSGP 43
Score = 38.3 bits (90), Expect = 3e-04
Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 5/45 (11%)
Query: 91 HLRAHAGETKRKKKFKCDKCEKQFYGLTLLRIHERLHA-EKLYEC 134
+ +GE + FKC++C K F + L H RLH+ EK
Sbjct: 3 SGSSGSGE----RPFKCNECGKGFGRRSHLAGHLRLHSREKSSGP 43
Score = 36.7 bits (86), Expect = 9e-04
Identities = 11/31 (35%), Positives = 15/31 (48%)
Query: 348 HLLTHTKEPPKSCEVCGRAFIRQDCLIRHLR 378
+ + E P C CG+ F R+ L HLR
Sbjct: 3 SGSSGSGERPFKCNECGKGFGRRSHLAGHLR 33
Score = 32.9 bits (76), Expect = 0.022
Identities = 11/30 (36%), Positives = 15/30 (50%), Gaps = 4/30 (13%)
Query: 78 CGRVFNRKDNLREHLRAHAGETKRKKKFKC 107
CG+ F R+ +L HLR H+ E K
Sbjct: 18 CGKGFGRRSHLAGHLRLHSRE----KSSGP 43
>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 58.7 bits (143), Expect = 2e-11
Identities = 17/48 (35%), Positives = 21/48 (43%), Gaps = 5/48 (10%)
Query: 150 HRRKHTGERPYECKEVCGRVFNRKDNLREHLRAHAGETKRKKKFKCDK 197
TGERPY C CG+ F + NL +H + H GE K
Sbjct: 3 SGSSGTGERPYICTV-CGKAFTDRSNLIKHQKIHTGE----KPSGPSS 45
Score = 49.4 bits (119), Expect = 3e-08
Identities = 14/42 (33%), Positives = 19/42 (45%)
Query: 234 RHMKTHSGVKPHVCEYCEKAFIQASQLKAHMFHHTGENGHTC 275
+ +G +P++C C KAF S L H HTGE
Sbjct: 2 SSGSSGTGERPYICTVCGKAFTDRSNLIKHQKIHTGEKPSGP 43
Score = 49.0 bits (118), Expect = 4e-08
Identities = 12/41 (29%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Query: 123 HERLH-AEKLYECDICKNRFPSSGAMKKHRRKHTGERPYEC 162
E+ Y C +C F + KH++ HTGE+P
Sbjct: 3 SGSSGTGERPYICTVCGKAFTDRSNLIKHQKIHTGEKPSGP 43
Score = 49.0 bits (118), Expect = 4e-08
Identities = 15/42 (35%), Positives = 20/42 (47%)
Query: 319 RHCLLHTGVKPHKCPICTKGFTMKSSLKIHLLTHTKEPPKSC 360
TG +P+ C +C K FT +S+L H HT E P
Sbjct: 2 SSGSSGTGERPYICTVCGKAFTDRSNLIKHQKIHTGEKPSGP 43
Score = 48.6 bits (117), Expect = 6e-08
Identities = 14/38 (36%), Positives = 19/38 (50%)
Query: 295 IHEGADPYQCDICRKTFIRKEDLTRHCLLHTGVKPHKC 332
G PY C +C K F + +L +H +HTG KP
Sbjct: 6 SGTGERPYICTVCGKAFTDRSNLIKHQKIHTGEKPSGP 43
Score = 39.8 bits (94), Expect = 9e-05
Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Query: 267 HTGENGHTCELCNKTFNRKARLELHMKYIHEGADPYQC 304
TGE + C +C K F ++ L H K IH G P
Sbjct: 7 GTGERPYICTVCGKAFTDRSNLIKHQK-IHTGEKPSGP 43
Score = 35.2 bits (82), Expect = 0.003
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 348 HLLTHTKEPPKSCEVCGRAFIRQDCLIRHLR 378
+ T E P C VCG+AF + LI+H +
Sbjct: 3 SGSSGTGERPYICTVCGKAFTDRSNLIKHQK 33
Score = 30.9 bits (71), Expect = 0.098
Identities = 11/34 (32%), Positives = 15/34 (44%), Gaps = 4/34 (11%)
Query: 76 KVCGRVFNRKDNLREHLRAHAGETKRKKKFKCDK 109
VCG+ F + NL +H + H GE K
Sbjct: 16 TVCGKAFTDRSNLIKHQKIHTGE----KPSGPSS 45
>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A
Length = 46
Score = 58.7 bits (143), Expect = 2e-11
Identities = 18/46 (39%), Positives = 22/46 (47%), Gaps = 5/46 (10%)
Query: 150 HRRKHTGERPYECKEVCGRVFNRKDNLREHLRAHAGETKRKKKFKC 195
TGE+PY CKE CG+ F L +H R H+GE K
Sbjct: 3 SGSSGTGEKPYNCKE-CGKSFRWASCLLKHQRVHSGE----KPSGP 43
Score = 54.1 bits (131), Expect = 7e-10
Identities = 13/43 (30%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Query: 123 HERLH-AEKLYECDICKNRFPSSGAMKKHRRKHTGERPYECKE 164
EK Y C C F + + KH+R H+GE+P
Sbjct: 3 SGSSGTGEKPYNCKECGKSFRWASCLLKHQRVHSGEKPSGPSS 45
Score = 49.1 bits (118), Expect = 4e-08
Identities = 14/43 (32%), Positives = 20/43 (46%)
Query: 234 RHMKTHSGVKPHVCEYCEKAFIQASQLKAHMFHHTGENGHTCE 276
+ +G KP+ C+ C K+F AS L H H+GE
Sbjct: 2 SSGSSGTGEKPYNCKECGKSFRWASCLLKHQRVHSGEKPSGPS 44
Score = 47.6 bits (114), Expect = 1e-07
Identities = 14/43 (32%), Positives = 16/43 (37%)
Query: 319 RHCLLHTGVKPHKCPICTKGFTMKSSLKIHLLTHTKEPPKSCE 361
TG KP+ C C K F S L H H+ E P
Sbjct: 2 SSGSSGTGEKPYNCKECGKSFRWASCLLKHQRVHSGEKPSGPS 44
Score = 46.8 bits (112), Expect = 2e-07
Identities = 13/38 (34%), Positives = 17/38 (44%)
Query: 295 IHEGADPYQCDICRKTFIRKEDLTRHCLLHTGVKPHKC 332
G PY C C K+F L +H +H+G KP
Sbjct: 6 SGTGEKPYNCKECGKSFRWASCLLKHQRVHSGEKPSGP 43
Score = 40.6 bits (96), Expect = 4e-05
Identities = 12/38 (31%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Query: 267 HTGENGHTCELCNKTFNRKARLELHMKYIHEGADPYQC 304
TGE + C+ C K+F + L H + +H G P
Sbjct: 7 GTGEKPYNCKECGKSFRWASCLLKHQR-VHSGEKPSGP 43
Score = 34.5 bits (80), Expect = 0.005
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 348 HLLTHTKEPPKSCEVCGRAFIRQDCLIRHLR 378
+ T E P +C+ CG++F CL++H R
Sbjct: 3 SGSSGTGEKPYNCKECGKSFRWASCLLKHQR 33
Score = 29.8 bits (68), Expect = 0.24
Identities = 10/30 (33%), Positives = 13/30 (43%), Gaps = 4/30 (13%)
Query: 78 CGRVFNRKDNLREHLRAHAGETKRKKKFKC 107
CG+ F L +H R H+GE K
Sbjct: 18 CGKSFRWASCLLKHQRVHSGE----KPSGP 43
>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 58.7 bits (143), Expect = 2e-11
Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 5/46 (10%)
Query: 150 HRRKHTGERPYECKEVCGRVFNRKDNLREHLRAHAGETKRKKKFKC 195
GE+ Y+C CG+ F++ +L+ H R H GE K
Sbjct: 3 SGSSGMGEKCYKCDV-CGKEFSQSSHLQTHQRVHTGE----KPSGP 43
Score = 52.9 bits (128), Expect = 2e-09
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 122 IHERLHA-EKLYECDICKNRFPSSGAMKKHRRKHTGERPYEC 162
EK Y+CD+C F S ++ H+R HTGE+P
Sbjct: 2 SSGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRVHTGEKPSGP 43
Score = 50.6 bits (122), Expect = 1e-08
Identities = 14/38 (36%), Positives = 18/38 (47%)
Query: 295 IHEGADPYQCDICRKTFIRKEDLTRHCLLHTGVKPHKC 332
G Y+CD+C K F + L H +HTG KP
Sbjct: 6 SGMGEKCYKCDVCGKEFSQSSHLQTHQRVHTGEKPSGP 43
Score = 46.8 bits (112), Expect = 2e-07
Identities = 14/41 (34%), Positives = 18/41 (43%)
Query: 320 HCLLHTGVKPHKCPICTKGFTMKSSLKIHLLTHTKEPPKSC 360
G K +KC +C K F+ S L+ H HT E P
Sbjct: 3 SGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRVHTGEKPSGP 43
Score = 46.8 bits (112), Expect = 3e-07
Identities = 14/41 (34%), Positives = 19/41 (46%)
Query: 235 HMKTHSGVKPHVCEYCEKAFIQASQLKAHMFHHTGENGHTC 275
+ G K + C+ C K F Q+S L+ H HTGE
Sbjct: 3 SGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRVHTGEKPSGP 43
Score = 40.6 bits (96), Expect = 4e-05
Identities = 11/42 (26%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 263 HMFHHTGENGHTCELCNKTFNRKARLELHMKYIHEGADPYQC 304
GE + C++C K F++ + L+ H + +H G P
Sbjct: 3 SGSSGMGEKCYKCDVCGKEFSQSSHLQTH-QRVHTGEKPSGP 43
Score = 39.8 bits (94), Expect = 8e-05
Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 5/45 (11%)
Query: 91 HLRAHAGETKRKKKFKCDKCEKQFYGLTLLRIHERLH-AEKLYEC 134
+ GE K +KCD C K+F + L+ H+R+H EK
Sbjct: 3 SGSSGMGE----KCYKCDVCGKEFSQSSHLQTHQRVHTGEKPSGP 43
Score = 35.2 bits (82), Expect = 0.003
Identities = 9/32 (28%), Positives = 13/32 (40%)
Query: 347 IHLLTHTKEPPKSCEVCGRAFIRQDCLIRHLR 378
+ E C+VCG+ F + L H R
Sbjct: 2 SSGSSGMGEKCYKCDVCGKEFSQSSHLQTHQR 33
Score = 31.7 bits (73), Expect = 0.059
Identities = 11/32 (34%), Positives = 16/32 (50%), Gaps = 4/32 (12%)
Query: 76 KVCGRVFNRKDNLREHLRAHAGETKRKKKFKC 107
VCG+ F++ +L+ H R H GE K
Sbjct: 16 DVCGKEFSQSSHLQTHQRVHTGE----KPSGP 43
>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 58.7 bits (143), Expect = 2e-11
Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 5/46 (10%)
Query: 150 HRRKHTGERPYECKEVCGRVFNRKDNLREHLRAHAGETKRKKKFKC 195
TGE+PY C E CG+ F + NL +H + H + K
Sbjct: 3 SGSSGTGEKPYICAE-CGKAFTIRSNLIKHQKIHTKQ----KPSGP 43
Score = 49.4 bits (119), Expect = 3e-08
Identities = 13/42 (30%), Positives = 18/42 (42%)
Query: 235 HMKTHSGVKPHVCEYCEKAFIQASQLKAHMFHHTGENGHTCE 276
+ +G KP++C C KAF S L H HT +
Sbjct: 3 SGSSGTGEKPYICAECGKAFTIRSNLIKHQKIHTKQKPSGPS 44
Score = 48.7 bits (117), Expect = 6e-08
Identities = 13/38 (34%), Positives = 17/38 (44%)
Query: 295 IHEGADPYQCDICRKTFIRKEDLTRHCLLHTGVKPHKC 332
G PY C C K F + +L +H +HT KP
Sbjct: 6 SGTGEKPYICAECGKAFTIRSNLIKHQKIHTKQKPSGP 43
Score = 47.9 bits (115), Expect = 9e-08
Identities = 11/41 (26%), Positives = 16/41 (39%), Gaps = 1/41 (2%)
Query: 123 HERLH-AEKLYECDICKNRFPSSGAMKKHRRKHTGERPYEC 162
EK Y C C F + KH++ HT ++P
Sbjct: 3 SGSSGTGEKPYICAECGKAFTIRSNLIKHQKIHTKQKPSGP 43
Score = 47.5 bits (114), Expect = 2e-07
Identities = 16/42 (38%), Positives = 21/42 (50%)
Query: 320 HCLLHTGVKPHKCPICTKGFTMKSSLKIHLLTHTKEPPKSCE 361
TG KP+ C C K FT++S+L H HTK+ P
Sbjct: 3 SGSSGTGEKPYICAECGKAFTIRSNLIKHQKIHTKQKPSGPS 44
Score = 39.8 bits (94), Expect = 7e-05
Identities = 13/43 (30%), Positives = 17/43 (39%), Gaps = 1/43 (2%)
Query: 262 AHMFHHTGENGHTCELCNKTFNRKARLELHMKYIHEGADPYQC 304
+ TGE + C C K F ++ L H K IH P
Sbjct: 2 SSGSSGTGEKPYICAECGKAFTIRSNLIKHQK-IHTKQKPSGP 43
Score = 34.8 bits (81), Expect = 0.005
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 348 HLLTHTKEPPKSCEVCGRAFIRQDCLIRHLR 378
+ T E P C CG+AF + LI+H +
Sbjct: 3 SGSSGTGEKPYICAECGKAFTIRSNLIKHQK 33
Score = 30.9 bits (71), Expect = 0.094
Identities = 13/70 (18%), Positives = 19/70 (27%), Gaps = 28/70 (40%)
Query: 179 HLRAHAGETKRKKKFKCDKCEKQFYGLTLLRIHERLHGLIERTCYARFAAKETLNRHMKT 238
+ GE K + C +C K F + L +H K
Sbjct: 3 SGSSGTGE----KPYICAECGKAF------------------------TIRSNLIKHQKI 34
Query: 239 HSGVKPHVCE 248
H+ KP
Sbjct: 35 HTKQKPSGPS 44
Score = 30.2 bits (69), Expect = 0.20
Identities = 8/30 (26%), Positives = 13/30 (43%), Gaps = 4/30 (13%)
Query: 78 CGRVFNRKDNLREHLRAHAGETKRKKKFKC 107
CG+ F + NL +H + H + K
Sbjct: 18 CGKAFTIRSNLIKHQKIHTKQ----KPSGP 43
>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 58.7 bits (143), Expect = 2e-11
Identities = 15/46 (32%), Positives = 19/46 (41%), Gaps = 5/46 (10%)
Query: 150 HRRKHTGERPYECKEVCGRVFNRKDNLREHLRAHAGETKRKKKFKC 195
TGE+PY+C C + F +L H R H GE K
Sbjct: 3 SGSSGTGEKPYKCDV-CHKSFRYGSSLTVHQRIHTGE----KPSGP 43
Score = 52.1 bits (126), Expect = 3e-09
Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 123 HERLHA-EKLYECDICKNRFPSSGAMKKHRRKHTGERPYECKE 164
EK Y+CD+C F ++ H+R HTGE+P
Sbjct: 3 SGSSGTGEKPYKCDVCHKSFRYGSSLTVHQRIHTGEKPSGPSS 45
Score = 50.6 bits (122), Expect = 1e-08
Identities = 16/38 (42%), Positives = 20/38 (52%)
Query: 295 IHEGADPYQCDICRKTFIRKEDLTRHCLLHTGVKPHKC 332
G PY+CD+C K+F LT H +HTG KP
Sbjct: 6 SGTGEKPYKCDVCHKSFRYGSSLTVHQRIHTGEKPSGP 43
Score = 47.9 bits (115), Expect = 1e-07
Identities = 17/41 (41%), Positives = 20/41 (48%)
Query: 320 HCLLHTGVKPHKCPICTKGFTMKSSLKIHLLTHTKEPPKSC 360
TG KP+KC +C K F SSL +H HT E P
Sbjct: 3 SGSSGTGEKPYKCDVCHKSFRYGSSLTVHQRIHTGEKPSGP 43
Score = 46.7 bits (112), Expect = 2e-07
Identities = 14/41 (34%), Positives = 19/41 (46%)
Query: 235 HMKTHSGVKPHVCEYCEKAFIQASQLKAHMFHHTGENGHTC 275
+ +G KP+ C+ C K+F S L H HTGE
Sbjct: 3 SGSSGTGEKPYKCDVCHKSFRYGSSLTVHQRIHTGEKPSGP 43
Score = 40.2 bits (95), Expect = 5e-05
Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 267 HTGENGHTCELCNKTFNRKARLELHMKYIHEGADPYQC 304
TGE + C++C+K+F + L +H + IH G P
Sbjct: 7 GTGEKPYKCDVCHKSFRYGSSLTVHQR-IHTGEKPSGP 43
Score = 34.0 bits (79), Expect = 0.009
Identities = 10/31 (32%), Positives = 14/31 (45%)
Query: 348 HLLTHTKEPPKSCEVCGRAFIRQDCLIRHLR 378
+ T E P C+VC ++F L H R
Sbjct: 3 SGSSGTGEKPYKCDVCHKSFRYGSSLTVHQR 33
Score = 30.9 bits (71), Expect = 0.11
Identities = 10/32 (31%), Positives = 12/32 (37%), Gaps = 4/32 (12%)
Query: 76 KVCGRVFNRKDNLREHLRAHAGETKRKKKFKC 107
VC + F +L H R H GE K
Sbjct: 16 DVCHKSFRYGSSLTVHQRIHTGE----KPSGP 43
>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 58.3 bits (142), Expect = 2e-11
Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 5/46 (10%)
Query: 150 HRRKHTGERPYECKEVCGRVFNRKDNLREHLRAHAGETKRKKKFKC 195
+GE+PY C E CG+ F++K L H R H GE K
Sbjct: 3 SGSSGSGEKPYGCNE-CGKTFSQKSILSAHQRTHTGE----KPSGP 43
Score = 52.5 bits (127), Expect = 2e-09
Identities = 13/44 (29%), Positives = 17/44 (38%), Gaps = 1/44 (2%)
Query: 122 IHERLH-AEKLYECDICKNRFPSSGAMKKHRRKHTGERPYECKE 164
EK Y C+ C F + H+R HTGE+P
Sbjct: 2 SSGSSGSGEKPYGCNECGKTFSQKSILSAHQRTHTGEKPSGPSS 45
Score = 48.3 bits (116), Expect = 8e-08
Identities = 16/38 (42%), Positives = 19/38 (50%)
Query: 295 IHEGADPYQCDICRKTFIRKEDLTRHCLLHTGVKPHKC 332
G PY C+ C KTF +K L+ H HTG KP
Sbjct: 6 SGSGEKPYGCNECGKTFSQKSILSAHQRTHTGEKPSGP 43
Score = 47.5 bits (114), Expect = 1e-07
Identities = 17/42 (40%), Positives = 19/42 (45%)
Query: 235 HMKTHSGVKPHVCEYCEKAFIQASQLKAHMFHHTGENGHTCE 276
+ SG KP+ C C K F Q S L AH HTGE
Sbjct: 3 SGSSGSGEKPYGCNECGKTFSQKSILSAHQRTHTGEKPSGPS 44
Score = 47.1 bits (113), Expect = 2e-07
Identities = 16/42 (38%), Positives = 19/42 (45%)
Query: 320 HCLLHTGVKPHKCPICTKGFTMKSSLKIHLLTHTKEPPKSCE 361
+G KP+ C C K F+ KS L H THT E P
Sbjct: 3 SGSSGSGEKPYGCNECGKTFSQKSILSAHQRTHTGEKPSGPS 44
Score = 40.2 bits (95), Expect = 6e-05
Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 262 AHMFHHTGENGHTCELCNKTFNRKARLELHMKYIHEGADPYQC 304
+ +GE + C C KTF++K+ L H + H G P
Sbjct: 2 SSGSSGSGEKPYGCNECGKTFSQKSILSAHQR-THTGEKPSGP 43
Score = 34.8 bits (81), Expect = 0.005
Identities = 9/32 (28%), Positives = 14/32 (43%)
Query: 347 IHLLTHTKEPPKSCEVCGRAFIRQDCLIRHLR 378
+ + E P C CG+ F ++ L H R
Sbjct: 2 SSGSSGSGEKPYGCNECGKTFSQKSILSAHQR 33
Score = 32.9 bits (76), Expect = 0.019
Identities = 15/70 (21%), Positives = 24/70 (34%), Gaps = 28/70 (40%)
Query: 179 HLRAHAGETKRKKKFKCDKCEKQFYGLTLLRIHERLHGLIERTCYARFAAKETLNRHMKT 238
+ +GE K + C++C K F+ K L+ H +T
Sbjct: 3 SGSSGSGE----KPYGCNECGK------------------------TFSQKSILSAHQRT 34
Query: 239 HSGVKPHVCE 248
H+G KP
Sbjct: 35 HTGEKPSGPS 44
Score = 30.6 bits (70), Expect = 0.13
Identities = 11/30 (36%), Positives = 14/30 (46%), Gaps = 4/30 (13%)
Query: 78 CGRVFNRKDNLREHLRAHAGETKRKKKFKC 107
CG+ F++K L H R H GE K
Sbjct: 18 CGKTFSQKSILSAHQRTHTGE----KPSGP 43
>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 58.3 bits (142), Expect = 2e-11
Identities = 15/47 (31%), Positives = 18/47 (38%), Gaps = 5/47 (10%)
Query: 149 KHRRKHTGERPYECKEVCGRVFNRKDNLREHLRAHAGETKRKKKFKC 195
+GE+PY C CG+ F L H R H GE K
Sbjct: 2 SSGSSGSGEKPYVCDY-CGKAFGLSAELVRHQRIHTGE----KPSGP 43
Score = 50.2 bits (121), Expect = 2e-08
Identities = 16/38 (42%), Positives = 18/38 (47%)
Query: 295 IHEGADPYQCDICRKTFIRKEDLTRHCLLHTGVKPHKC 332
G PY CD C K F +L RH +HTG KP
Sbjct: 6 SGSGEKPYVCDYCGKAFGLSAELVRHQRIHTGEKPSGP 43
Score = 49.8 bits (120), Expect = 2e-08
Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Query: 123 HERLHA-EKLYECDICKNRFPSSGAMKKHRRKHTGERPYEC 162
+ EK Y CD C F S + +H+R HTGE+P
Sbjct: 3 SGSSGSGEKPYVCDYCGKAFGLSAELVRHQRIHTGEKPSGP 43
Score = 49.4 bits (119), Expect = 3e-08
Identities = 17/42 (40%), Positives = 23/42 (54%)
Query: 234 RHMKTHSGVKPHVCEYCEKAFIQASQLKAHMFHHTGENGHTC 275
+ SG KP+VC+YC KAF +++L H HTGE
Sbjct: 2 SSGSSGSGEKPYVCDYCGKAFGLSAELVRHQRIHTGEKPSGP 43
Score = 45.6 bits (109), Expect = 7e-07
Identities = 13/42 (30%), Positives = 17/42 (40%)
Query: 319 RHCLLHTGVKPHKCPICTKGFTMKSSLKIHLLTHTKEPPKSC 360
+G KP+ C C K F + + L H HT E P
Sbjct: 2 SSGSSGSGEKPYVCDYCGKAFGLSAELVRHQRIHTGEKPSGP 43
Score = 39.4 bits (93), Expect = 9e-05
Identities = 13/38 (34%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Query: 267 HTGENGHTCELCNKTFNRKARLELHMKYIHEGADPYQC 304
+GE + C+ C K F A L H + IH G P
Sbjct: 7 GSGEKPYVCDYCGKAFGLSAELVRHQR-IHTGEKPSGP 43
Score = 36.0 bits (84), Expect = 0.002
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 348 HLLTHTKEPPKSCEVCGRAFIRQDCLIRHLR 378
+ + E P C+ CG+AF L+RH R
Sbjct: 3 SGSSGSGEKPYVCDYCGKAFGLSAELVRHQR 33
Score = 30.9 bits (71), Expect = 0.099
Identities = 15/69 (21%), Positives = 20/69 (28%), Gaps = 28/69 (40%)
Query: 179 HLRAHAGETKRKKKFKCDKCEKQFYGLTLLRIHERLHGLIERTCYARFAAKETLNRHMKT 238
+ +GE K + CD C K F L RH +
Sbjct: 3 SGSSGSGE----KPYVCDYCGKAF------------------------GLSAELVRHQRI 34
Query: 239 HSGVKPHVC 247
H+G KP
Sbjct: 35 HTGEKPSGP 43
Score = 29.4 bits (67), Expect = 0.34
Identities = 10/32 (31%), Positives = 11/32 (34%), Gaps = 4/32 (12%)
Query: 76 KVCGRVFNRKDNLREHLRAHAGETKRKKKFKC 107
CG+ F L H R H GE K
Sbjct: 16 DYCGKAFGLSAELVRHQRIHTGE----KPSGP 43
>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 58.3 bits (142), Expect = 2e-11
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 5/46 (10%)
Query: 150 HRRKHTGERPYECKEVCGRVFNRKDNLREHLRAHAGETKRKKKFKC 195
TGE+PY+C+E CG+ F + +L H H GE K
Sbjct: 3 SGSSGTGEKPYKCEE-CGKGFICRRDLYTHHMVHTGE----KPSGP 43
Score = 49.8 bits (120), Expect = 2e-08
Identities = 16/42 (38%), Positives = 19/42 (45%)
Query: 320 HCLLHTGVKPHKCPICTKGFTMKSSLKIHLLTHTKEPPKSCE 361
TG KP+KC C KGF + L H + HT E P
Sbjct: 3 SGSSGTGEKPYKCEECGKGFICRRDLYTHHMVHTGEKPSGPS 44
Score = 49.5 bits (119), Expect = 3e-08
Identities = 16/38 (42%), Positives = 21/38 (55%)
Query: 295 IHEGADPYQCDICRKTFIRKEDLTRHCLLHTGVKPHKC 332
G PY+C+ C K FI + DL H ++HTG KP
Sbjct: 6 SGTGEKPYKCEECGKGFICRRDLYTHHMVHTGEKPSGP 43
Score = 49.5 bits (119), Expect = 3e-08
Identities = 12/41 (29%), Positives = 16/41 (39%), Gaps = 1/41 (2%)
Query: 123 HERLH-AEKLYECDICKNRFPSSGAMKKHRRKHTGERPYEC 162
EK Y+C+ C F + H HTGE+P
Sbjct: 3 SGSSGTGEKPYKCEECGKGFICRRDLYTHHMVHTGEKPSGP 43
Score = 49.5 bits (119), Expect = 3e-08
Identities = 15/42 (35%), Positives = 18/42 (42%)
Query: 235 HMKTHSGVKPHVCEYCEKAFIQASQLKAHMFHHTGENGHTCE 276
+ +G KP+ CE C K FI L H HTGE
Sbjct: 3 SGSSGTGEKPYKCEECGKGFICRRDLYTHHMVHTGEKPSGPS 44
Score = 40.2 bits (95), Expect = 6e-05
Identities = 13/43 (30%), Positives = 17/43 (39%), Gaps = 1/43 (2%)
Query: 262 AHMFHHTGENGHTCELCNKTFNRKARLELHMKYIHEGADPYQC 304
+ TGE + CE C K F + L H +H G P
Sbjct: 2 SSGSSGTGEKPYKCEECGKGFICRRDLYTHHM-VHTGEKPSGP 43
Score = 39.1 bits (92), Expect = 1e-04
Identities = 13/45 (28%), Positives = 18/45 (40%), Gaps = 5/45 (11%)
Query: 91 HLRAHAGETKRKKKFKCDKCEKQFYGLTLLRIHERLH-AEKLYEC 134
+ GE K +KC++C K F L H +H EK
Sbjct: 3 SGSSGTGE----KPYKCEECGKGFICRRDLYTHHMVHTGEKPSGP 43
Score = 35.2 bits (82), Expect = 0.003
Identities = 11/31 (35%), Positives = 14/31 (45%)
Query: 348 HLLTHTKEPPKSCEVCGRAFIRQDCLIRHLR 378
+ T E P CE CG+ FI + L H
Sbjct: 3 SGSSGTGEKPYKCEECGKGFICRRDLYTHHM 33
Score = 31.0 bits (71), Expect = 0.11
Identities = 9/30 (30%), Positives = 12/30 (40%), Gaps = 4/30 (13%)
Query: 78 CGRVFNRKDNLREHLRAHAGETKRKKKFKC 107
CG+ F + +L H H GE K
Sbjct: 18 CGKGFICRRDLYTHHMVHTGE----KPSGP 43
>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 58.3 bits (142), Expect = 2e-11
Identities = 17/47 (36%), Positives = 21/47 (44%), Gaps = 5/47 (10%)
Query: 149 KHRRKHTGERPYECKEVCGRVFNRKDNLREHLRAHAGETKRKKKFKC 195
TGE+PYEC CG+ F +K L H + H GE K
Sbjct: 2 SSGSSGTGEKPYECSI-CGKSFTKKSQLHVHQQIHTGE----KPSGP 43
Score = 52.2 bits (126), Expect = 3e-09
Identities = 14/43 (32%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Query: 122 IHERLH-AEKLYECDICKNRFPSSGAMKKHRRKHTGERPYECK 163
EK YEC IC F + H++ HTGE+P
Sbjct: 2 SSGSSGTGEKPYECSICGKSFTKKSQLHVHQQIHTGEKPSGPS 44
Score = 49.5 bits (119), Expect = 3e-08
Identities = 18/42 (42%), Positives = 21/42 (50%)
Query: 319 RHCLLHTGVKPHKCPICTKGFTMKSSLKIHLLTHTKEPPKSC 360
TG KP++C IC K FT KS L +H HT E P
Sbjct: 2 SSGSSGTGEKPYECSICGKSFTKKSQLHVHQQIHTGEKPSGP 43
Score = 49.5 bits (119), Expect = 3e-08
Identities = 15/42 (35%), Positives = 20/42 (47%)
Query: 234 RHMKTHSGVKPHVCEYCEKAFIQASQLKAHMFHHTGENGHTC 275
+ +G KP+ C C K+F + SQL H HTGE
Sbjct: 2 SSGSSGTGEKPYECSICGKSFTKKSQLHVHQQIHTGEKPSGP 43
Score = 48.7 bits (117), Expect = 6e-08
Identities = 16/38 (42%), Positives = 20/38 (52%)
Query: 295 IHEGADPYQCDICRKTFIRKEDLTRHCLLHTGVKPHKC 332
G PY+C IC K+F +K L H +HTG KP
Sbjct: 6 SGTGEKPYECSICGKSFTKKSQLHVHQQIHTGEKPSGP 43
Score = 39.8 bits (94), Expect = 7e-05
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 263 HMFHHTGENGHTCELCNKTFNRKARLELHMKYIHEGADPYQC 304
TGE + C +C K+F +K++L +H + IH G P
Sbjct: 3 SGSSGTGEKPYECSICGKSFTKKSQLHVHQQ-IHTGEKPSGP 43
Score = 34.1 bits (79), Expect = 0.007
Identities = 9/32 (28%), Positives = 16/32 (50%)
Query: 347 IHLLTHTKEPPKSCEVCGRAFIRQDCLIRHLR 378
+ T E P C +CG++F ++ L H +
Sbjct: 2 SSGSSGTGEKPYECSICGKSFTKKSQLHVHQQ 33
Score = 30.2 bits (69), Expect = 0.24
Identities = 10/32 (31%), Positives = 14/32 (43%), Gaps = 4/32 (12%)
Query: 76 KVCGRVFNRKDNLREHLRAHAGETKRKKKFKC 107
+CG+ F +K L H + H GE K
Sbjct: 16 SICGKSFTKKSQLHVHQQIHTGE----KPSGP 43
>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A
Length = 42
Score = 57.9 bits (141), Expect = 2e-11
Identities = 21/45 (46%), Positives = 23/45 (51%), Gaps = 5/45 (11%)
Query: 151 RRKHTGERPYECKEVCGRVFNRKDNLREHLRAHAGETKRKKKFKC 195
+GE PYEC E CG+ FNRKD L H R HAGE
Sbjct: 2 SSGSSGENPYECSE-CGKAFNRKDQLISHQRTHAGE----SGPSS 41
Score = 50.2 bits (121), Expect = 1e-08
Identities = 15/39 (38%), Positives = 20/39 (51%)
Query: 237 KTHSGVKPHVCEYCEKAFIQASQLKAHMFHHTGENGHTC 275
SG P+ C C KAF + QL +H H GE+G +
Sbjct: 3 SGSSGENPYECSECGKAFNRKDQLISHQRTHAGESGPSS 41
Score = 49.0 bits (118), Expect = 4e-08
Identities = 13/38 (34%), Positives = 16/38 (42%)
Query: 295 IHEGADPYQCDICRKTFIRKEDLTRHCLLHTGVKPHKC 332
G +PY+C C K F RK+ L H H G
Sbjct: 4 GSSGENPYECSECGKAFNRKDQLISHQRTHAGESGPSS 41
Score = 46.4 bits (111), Expect = 3e-07
Identities = 13/37 (35%), Positives = 16/37 (43%)
Query: 324 HTGVKPHKCPICTKGFTMKSSLKIHLLTHTKEPPKSC 360
+G P++C C K F K L H TH E S
Sbjct: 5 SSGENPYECSECGKAFNRKDQLISHQRTHAGESGPSS 41
Score = 45.6 bits (109), Expect = 7e-07
Identities = 11/34 (32%), Positives = 13/34 (38%)
Query: 129 EKLYECDICKNRFPSSGAMKKHRRKHTGERPYEC 162
E YEC C F + H+R H GE
Sbjct: 8 ENPYECSECGKAFNRKDQLISHQRTHAGESGPSS 41
Score = 42.1 bits (100), Expect = 1e-05
Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Query: 267 HTGENGHTCELCNKTFNRKARLELHMKYIHEGADPYQC 304
+GEN + C C K FNRK +L H + H G
Sbjct: 5 SSGENPYECSECGKAFNRKDQLISHQR-THAGESGPSS 41
Score = 35.6 bits (83), Expect = 0.002
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 351 THTKEPPKSCEVCGRAFIRQDCLIRHLR 378
+ E P C CG+AF R+D LI H R
Sbjct: 4 GSSGENPYECSECGKAFNRKDQLISHQR 31
Score = 32.5 bits (75), Expect = 0.028
Identities = 14/30 (46%), Positives = 15/30 (50%), Gaps = 4/30 (13%)
Query: 78 CGRVFNRKDNLREHLRAHAGETKRKKKFKC 107
CG+ FNRKD L H R HAGE
Sbjct: 16 CGKAFNRKDQLISHQRTHAGE----SGPSS 41
>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens}
Length = 46
Score = 58.3 bits (142), Expect = 2e-11
Identities = 13/48 (27%), Positives = 20/48 (41%), Gaps = 5/48 (10%)
Query: 150 HRRKHTGERPYECKEVCGRVFNRKDNLREHLRAHAGETKRKKKFKCDK 197
GE+ ++C+E C F++ +LR H H GE K
Sbjct: 3 SGSSGMGEKTWKCRE-CDMCFSQASSLRLHQNVHVGE----KPSGPSS 45
Score = 50.2 bits (121), Expect = 1e-08
Identities = 13/41 (31%), Positives = 16/41 (39%)
Query: 235 HMKTHSGVKPHVCEYCEKAFIQASQLKAHMFHHTGENGHTC 275
+ G K C C+ F QAS L+ H H GE
Sbjct: 3 SGSSGMGEKTWKCRECDMCFSQASSLRLHQNVHVGEKPSGP 43
Score = 50.2 bits (121), Expect = 2e-08
Identities = 13/41 (31%), Positives = 16/41 (39%)
Query: 320 HCLLHTGVKPHKCPICTKGFTMKSSLKIHLLTHTKEPPKSC 360
G K KC C F+ SSL++H H E P
Sbjct: 3 SGSSGMGEKTWKCRECDMCFSQASSLRLHQNVHVGEKPSGP 43
Score = 49.1 bits (118), Expect = 4e-08
Identities = 10/41 (24%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Query: 123 HERLHA-EKLYECDICKNRFPSSGAMKKHRRKHTGERPYEC 162
EK ++C C F + +++ H+ H GE+P
Sbjct: 3 SGSSGMGEKTWKCRECDMCFSQASSLRLHQNVHVGEKPSGP 43
Score = 46.8 bits (112), Expect = 3e-07
Identities = 10/38 (26%), Positives = 14/38 (36%)
Query: 295 IHEGADPYQCDICRKTFIRKEDLTRHCLLHTGVKPHKC 332
G ++C C F + L H +H G KP
Sbjct: 6 SGMGEKTWKCRECDMCFSQASSLRLHQNVHVGEKPSGP 43
Score = 41.0 bits (97), Expect = 3e-05
Identities = 11/43 (25%), Positives = 17/43 (39%), Gaps = 1/43 (2%)
Query: 262 AHMFHHTGENGHTCELCNKTFNRKARLELHMKYIHEGADPYQC 304
+ GE C C+ F++ + L LH +H G P
Sbjct: 2 SSGSSGMGEKTWKCRECDMCFSQASSLRLHQN-VHVGEKPSGP 43
Score = 35.6 bits (83), Expect = 0.002
Identities = 11/37 (29%), Positives = 19/37 (51%), Gaps = 4/37 (10%)
Query: 179 HLRAHAGETKRKKKFKCDKCEKQFYGLTLLRIHERLH 215
+ GE K +KC +C+ F + LR+H+ +H
Sbjct: 3 SGSSGMGE----KTWKCRECDMCFSQASSLRLHQNVH 35
Score = 34.4 bits (80), Expect = 0.006
Identities = 6/31 (19%), Positives = 8/31 (25%)
Query: 348 HLLTHTKEPPKSCEVCGRAFIRQDCLIRHLR 378
+ E C C F + L H
Sbjct: 3 SGSSGMGEKTWKCRECDMCFSQASSLRLHQN 33
Score = 33.7 bits (78), Expect = 0.011
Identities = 9/32 (28%), Positives = 12/32 (37%), Gaps = 4/32 (12%)
Query: 78 CGRVFNRKDNLREHLRAHAGETKRKKKFKCDK 109
C F++ +LR H H GE K
Sbjct: 18 CDMCFSQASSLRLHQNVHVGE----KPSGPSS 45
>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 57.9 bits (141), Expect = 3e-11
Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 5/46 (10%)
Query: 150 HRRKHTGERPYECKEVCGRVFNRKDNLREHLRAHAGETKRKKKFKC 195
GE+PY C E CG+ F+ K L H+R H+GE K
Sbjct: 3 SGSSGAGEKPYGCSE-CGKAFSSKSYLIIHMRTHSGE----KPSGP 43
Score = 52.2 bits (126), Expect = 3e-09
Identities = 15/43 (34%), Positives = 19/43 (44%)
Query: 234 RHMKTHSGVKPHVCEYCEKAFIQASQLKAHMFHHTGENGHTCE 276
+ +G KP+ C C KAF S L HM H+GE
Sbjct: 2 SSGSSGAGEKPYGCSECGKAFSSKSYLIIHMRTHSGEKPSGPS 44
Score = 51.4 bits (124), Expect = 6e-09
Identities = 14/41 (34%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Query: 123 HERLHA-EKLYECDICKNRFPSSGAMKKHRRKHTGERPYEC 162
A EK Y C C F S + H R H+GE+P
Sbjct: 3 SGSSGAGEKPYGCSECGKAFSSKSYLIIHMRTHSGEKPSGP 43
Score = 49.5 bits (119), Expect = 3e-08
Identities = 16/43 (37%), Positives = 20/43 (46%)
Query: 319 RHCLLHTGVKPHKCPICTKGFTMKSSLKIHLLTHTKEPPKSCE 361
G KP+ C C K F+ KS L IH+ TH+ E P
Sbjct: 2 SSGSSGAGEKPYGCSECGKAFSSKSYLIIHMRTHSGEKPSGPS 44
Score = 46.8 bits (112), Expect = 3e-07
Identities = 14/38 (36%), Positives = 15/38 (39%)
Query: 295 IHEGADPYQCDICRKTFIRKEDLTRHCLLHTGVKPHKC 332
G PY C C K F K L H H+G KP
Sbjct: 6 SGAGEKPYGCSECGKAFSSKSYLIIHMRTHSGEKPSGP 43
Score = 40.6 bits (96), Expect = 3e-05
Identities = 13/43 (30%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Query: 262 AHMFHHTGENGHTCELCNKTFNRKARLELHMKYIHEGADPYQC 304
+ GE + C C K F+ K+ L +HM+ H G P
Sbjct: 2 SSGSSGAGEKPYGCSECGKAFSSKSYLIIHMR-THSGEKPSGP 43
Score = 34.4 bits (80), Expect = 0.006
Identities = 11/31 (35%), Positives = 15/31 (48%)
Query: 348 HLLTHTKEPPKSCEVCGRAFIRQDCLIRHLR 378
+ E P C CG+AF + LI H+R
Sbjct: 3 SGSSGAGEKPYGCSECGKAFSSKSYLIIHMR 33
Score = 29.8 bits (68), Expect = 0.26
Identities = 11/30 (36%), Positives = 15/30 (50%), Gaps = 4/30 (13%)
Query: 78 CGRVFNRKDNLREHLRAHAGETKRKKKFKC 107
CG+ F+ K L H+R H+GE K
Sbjct: 18 CGKAFSSKSYLIIHMRTHSGE----KPSGP 43
>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 57.9 bits (141), Expect = 3e-11
Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 5/46 (10%)
Query: 150 HRRKHTGERPYECKEVCGRVFNRKDNLREHLRAHAGETKRKKKFKC 195
TGE+PY+C E CG+VF + +L H H GE K
Sbjct: 3 SGSSGTGEKPYKCNE-CGKVFTQNSHLVRHRGIHTGE----KPSGP 43
Score = 49.0 bits (118), Expect = 5e-08
Identities = 15/38 (39%), Positives = 19/38 (50%)
Query: 295 IHEGADPYQCDICRKTFIRKEDLTRHCLLHTGVKPHKC 332
G PY+C+ C K F + L RH +HTG KP
Sbjct: 6 SGTGEKPYKCNECGKVFTQNSHLVRHRGIHTGEKPSGP 43
Score = 48.6 bits (117), Expect = 6e-08
Identities = 15/43 (34%), Positives = 18/43 (41%)
Query: 234 RHMKTHSGVKPHVCEYCEKAFIQASQLKAHMFHHTGENGHTCE 276
+ +G KP+ C C K F Q S L H HTGE
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLVRHRGIHTGEKPSGPS 44
Score = 47.5 bits (114), Expect = 1e-07
Identities = 13/41 (31%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Query: 123 HERLH-AEKLYECDICKNRFPSSGAMKKHRRKHTGERPYEC 162
EK Y+C+ C F + + +HR HTGE+P
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLVRHRGIHTGEKPSGP 43
Score = 46.7 bits (112), Expect = 3e-07
Identities = 17/43 (39%), Positives = 18/43 (41%)
Query: 319 RHCLLHTGVKPHKCPICTKGFTMKSSLKIHLLTHTKEPPKSCE 361
TG KP+KC C K FT S L H HT E P
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLVRHRGIHTGEKPSGPS 44
Score = 39.4 bits (93), Expect = 1e-04
Identities = 13/43 (30%), Positives = 17/43 (39%), Gaps = 1/43 (2%)
Query: 262 AHMFHHTGENGHTCELCNKTFNRKARLELHMKYIHEGADPYQC 304
+ TGE + C C K F + + L H IH G P
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLVRHRG-IHTGEKPSGP 43
Score = 34.8 bits (81), Expect = 0.005
Identities = 10/31 (32%), Positives = 14/31 (45%)
Query: 348 HLLTHTKEPPKSCEVCGRAFIRQDCLIRHLR 378
+ T E P C CG+ F + L+RH
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLVRHRG 33
Score = 30.1 bits (69), Expect = 0.22
Identities = 10/30 (33%), Positives = 13/30 (43%), Gaps = 4/30 (13%)
Query: 78 CGRVFNRKDNLREHLRAHAGETKRKKKFKC 107
CG+VF + +L H H GE K
Sbjct: 18 CGKVFTQNSHLVRHRGIHTGE----KPSGP 43
>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens}
Length = 46
Score = 57.9 bits (141), Expect = 3e-11
Identities = 13/48 (27%), Positives = 17/48 (35%), Gaps = 5/48 (10%)
Query: 150 HRRKHTGERPYECKEVCGRVFNRKDNLREHLRAHAGETKRKKKFKCDK 197
G PY+C + C + F+ K L H R H E K
Sbjct: 3 SGSSGAGVNPYKCSQ-CEKSFSGKLRLLVHQRMHTRE----KPSGPSS 45
Score = 51.8 bits (125), Expect = 5e-09
Identities = 15/41 (36%), Positives = 19/41 (46%)
Query: 320 HCLLHTGVKPHKCPICTKGFTMKSSLKIHLLTHTKEPPKSC 360
GV P+KC C K F+ K L +H HT+E P
Sbjct: 3 SGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRMHTREKPSGP 43
Score = 50.2 bits (121), Expect = 1e-08
Identities = 13/41 (31%), Positives = 18/41 (43%)
Query: 235 HMKTHSGVKPHVCEYCEKAFIQASQLKAHMFHHTGENGHTC 275
+ +GV P+ C CEK+F +L H HT E
Sbjct: 3 SGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRMHTREKPSGP 43
Score = 48.3 bits (116), Expect = 7e-08
Identities = 11/41 (26%), Positives = 16/41 (39%), Gaps = 1/41 (2%)
Query: 123 HERLHA-EKLYECDICKNRFPSSGAMKKHRRKHTGERPYEC 162
A Y+C C+ F + H+R HT E+P
Sbjct: 3 SGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRMHTREKPSGP 43
Score = 47.1 bits (113), Expect = 2e-07
Identities = 14/38 (36%), Positives = 18/38 (47%)
Query: 295 IHEGADPYQCDICRKTFIRKEDLTRHCLLHTGVKPHKC 332
G +PY+C C K+F K L H +HT KP
Sbjct: 6 SGAGVNPYKCSQCEKSFSGKLRLLVHQRMHTREKPSGP 43
Score = 42.5 bits (101), Expect = 9e-06
Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 5/45 (11%)
Query: 91 HLRAHAGETKRKKKFKCDKCEKQFYGLTLLRIHERLH-AEKLYEC 134
+ AG +KC +CEK F G L +H+R+H EK
Sbjct: 3 SGSSGAGV----NPYKCSQCEKSFSGKLRLLVHQRMHTREKPSGP 43
Score = 41.4 bits (98), Expect = 2e-05
Identities = 12/38 (31%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Query: 267 HTGENGHTCELCNKTFNRKARLELHMKYIHEGADPYQC 304
G N + C C K+F+ K RL +H + +H P
Sbjct: 7 GAGVNPYKCSQCEKSFSGKLRLLVHQR-MHTREKPSGP 43
Score = 36.4 bits (85), Expect = 0.001
Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 4/37 (10%)
Query: 179 HLRAHAGETKRKKKFKCDKCEKQFYGLTLLRIHERLH 215
+ AG +KC +CEK F G L +H+R+H
Sbjct: 3 SGSSGAGV----NPYKCSQCEKSFSGKLRLLVHQRMH 35
Score = 33.3 bits (77), Expect = 0.016
Identities = 7/31 (22%), Positives = 12/31 (38%)
Query: 348 HLLTHTKEPPKSCEVCGRAFIRQDCLIRHLR 378
+ P C C ++F + L+ H R
Sbjct: 3 SGSSGAGVNPYKCSQCEKSFSGKLRLLVHQR 33
Score = 33.3 bits (77), Expect = 0.018
Identities = 9/32 (28%), Positives = 11/32 (34%), Gaps = 4/32 (12%)
Query: 78 CGRVFNRKDNLREHLRAHAGETKRKKKFKCDK 109
C + F+ K L H R H E K
Sbjct: 18 CEKSFSGKLRLLVHQRMHTRE----KPSGPSS 45
>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 57.9 bits (141), Expect = 3e-11
Identities = 12/46 (26%), Positives = 19/46 (41%), Gaps = 5/46 (10%)
Query: 150 HRRKHTGERPYECKEVCGRVFNRKDNLREHLRAHAGETKRKKKFKC 195
G++ ++C E C + F + +L H R H GE K
Sbjct: 3 SGSSGAGKKLFKCNE-CKKTFTQSSSLTVHQRIHTGE----KPSGP 43
Score = 50.2 bits (121), Expect = 2e-08
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Query: 123 HERLHA-EKLYECDICKNRFPSSGAMKKHRRKHTGERPYEC 162
A +KL++C+ CK F S ++ H+R HTGE+P
Sbjct: 3 SGSSGAGKKLFKCNECKKTFTQSSSLTVHQRIHTGEKPSGP 43
Score = 49.4 bits (119), Expect = 3e-08
Identities = 14/38 (36%), Positives = 20/38 (52%)
Query: 295 IHEGADPYQCDICRKTFIRKEDLTRHCLLHTGVKPHKC 332
G ++C+ C+KTF + LT H +HTG KP
Sbjct: 6 SGAGKKLFKCNECKKTFTQSSSLTVHQRIHTGEKPSGP 43
Score = 48.7 bits (117), Expect = 6e-08
Identities = 14/41 (34%), Positives = 18/41 (43%)
Query: 235 HMKTHSGVKPHVCEYCEKAFIQASQLKAHMFHHTGENGHTC 275
+ +G K C C+K F Q+S L H HTGE
Sbjct: 3 SGSSGAGKKLFKCNECKKTFTQSSSLTVHQRIHTGEKPSGP 43
Score = 47.1 bits (113), Expect = 2e-07
Identities = 16/41 (39%), Positives = 17/41 (41%)
Query: 320 HCLLHTGVKPHKCPICTKGFTMKSSLKIHLLTHTKEPPKSC 360
G K KC C K FT SSL +H HT E P
Sbjct: 3 SGSSGAGKKLFKCNECKKTFTQSSSLTVHQRIHTGEKPSGP 43
Score = 41.3 bits (98), Expect = 3e-05
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 5/45 (11%)
Query: 91 HLRAHAGETKRKKKFKCDKCEKQFYGLTLLRIHERLH-AEKLYEC 134
+ AG+ K FKC++C+K F + L +H+R+H EK
Sbjct: 3 SGSSGAGK----KLFKCNECKKTFTQSSSLTVHQRIHTGEKPSGP 43
Score = 41.0 bits (97), Expect = 3e-05
Identities = 12/43 (27%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Query: 262 AHMFHHTGENGHTCELCNKTFNRKARLELHMKYIHEGADPYQC 304
+ G+ C C KTF + + L +H + IH G P
Sbjct: 2 SSGSSGAGKKLFKCNECKKTFTQSSSLTVHQR-IHTGEKPSGP 43
Score = 34.8 bits (81), Expect = 0.004
Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 4/37 (10%)
Query: 179 HLRAHAGETKRKKKFKCDKCEKQFYGLTLLRIHERLH 215
+ AG+ K FKC++C+K F + L +H+R+H
Sbjct: 3 SGSSGAGK----KLFKCNECKKTFTQSSSLTVHQRIH 35
Score = 32.5 bits (75), Expect = 0.028
Identities = 6/31 (19%), Positives = 10/31 (32%)
Query: 348 HLLTHTKEPPKSCEVCGRAFIRQDCLIRHLR 378
+ + C C + F + L H R
Sbjct: 3 SGSSGAGKKLFKCNECKKTFTQSSSLTVHQR 33
Score = 30.6 bits (70), Expect = 0.13
Identities = 9/30 (30%), Positives = 12/30 (40%), Gaps = 4/30 (13%)
Query: 78 CGRVFNRKDNLREHLRAHAGETKRKKKFKC 107
C + F + +L H R H GE K
Sbjct: 18 CKKTFTQSSSLTVHQRIHTGE----KPSGP 43
>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 57.9 bits (141), Expect = 3e-11
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 5/46 (10%)
Query: 150 HRRKHTGERPYECKEVCGRVFNRKDNLREHLRAHAGETKRKKKFKC 195
TG++PY+C E CG+VF + +L H H GE K
Sbjct: 3 SGSSGTGKKPYKCNE-CGKVFTQNSHLARHRGIHTGE----KPSGP 43
Score = 49.8 bits (120), Expect = 2e-08
Identities = 15/38 (39%), Positives = 19/38 (50%)
Query: 295 IHEGADPYQCDICRKTFIRKEDLTRHCLLHTGVKPHKC 332
G PY+C+ C K F + L RH +HTG KP
Sbjct: 6 SGTGKKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGP 43
Score = 48.7 bits (117), Expect = 6e-08
Identities = 12/41 (29%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Query: 123 HERLH-AEKLYECDICKNRFPSSGAMKKHRRKHTGERPYEC 162
+K Y+C+ C F + + +HR HTGE+P
Sbjct: 3 SGSSGTGKKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGP 43
Score = 46.7 bits (112), Expect = 3e-07
Identities = 15/42 (35%), Positives = 18/42 (42%)
Query: 235 HMKTHSGVKPHVCEYCEKAFIQASQLKAHMFHHTGENGHTCE 276
+ +G KP+ C C K F Q S L H HTGE
Sbjct: 3 SGSSGTGKKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPS 44
Score = 44.8 bits (107), Expect = 1e-06
Identities = 17/42 (40%), Positives = 18/42 (42%)
Query: 320 HCLLHTGVKPHKCPICTKGFTMKSSLKIHLLTHTKEPPKSCE 361
TG KP+KC C K FT S L H HT E P
Sbjct: 3 SGSSGTGKKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPS 44
Score = 40.6 bits (96), Expect = 4e-05
Identities = 12/43 (27%), Positives = 17/43 (39%), Gaps = 1/43 (2%)
Query: 262 AHMFHHTGENGHTCELCNKTFNRKARLELHMKYIHEGADPYQC 304
+ TG+ + C C K F + + L H IH G P
Sbjct: 2 SSGSSGTGKKPYKCNECGKVFTQNSHLARHRG-IHTGEKPSGP 43
Score = 37.9 bits (89), Expect = 3e-04
Identities = 12/45 (26%), Positives = 19/45 (42%), Gaps = 5/45 (11%)
Query: 91 HLRAHAGETKRKKKFKCDKCEKQFYGLTLLRIHERLH-AEKLYEC 134
+ G+ K +KC++C K F + L H +H EK
Sbjct: 3 SGSSGTGK----KPYKCNECGKVFTQNSHLARHRGIHTGEKPSGP 43
Score = 34.0 bits (79), Expect = 0.009
Identities = 9/31 (29%), Positives = 13/31 (41%)
Query: 348 HLLTHTKEPPKSCEVCGRAFIRQDCLIRHLR 378
+ T + P C CG+ F + L RH
Sbjct: 3 SGSSGTGKKPYKCNECGKVFTQNSHLARHRG 33
Score = 30.2 bits (69), Expect = 0.24
Identities = 10/30 (33%), Positives = 13/30 (43%), Gaps = 4/30 (13%)
Query: 78 CGRVFNRKDNLREHLRAHAGETKRKKKFKC 107
CG+VF + +L H H GE K
Sbjct: 18 CGKVFTQNSHLARHRGIHTGE----KPSGP 43
>2d8q_A BLU protein, zinc finger MYND domain containing protein 10;
zmynd10, ZF-MYND, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.85.1.1 PDB: 2dan_A
Length = 70
Score = 58.5 bits (141), Expect = 3e-11
Identities = 11/46 (23%), Positives = 20/46 (43%)
Query: 423 GEENLLRCSKCKVTFYCSKQHQTLDWKAHKINCNILSNQSATNNTS 468
E RCS+C+ +YC ++ Q W+ H C + + +
Sbjct: 22 SAEASKRCSRCQNEWYCCRECQVKHWEKHGKTCVLAAQGDRAKSGP 67
>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 57.5 bits (140), Expect = 4e-11
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 5/47 (10%)
Query: 149 KHRRKHTGERPYECKEVCGRVFNRKDNLREHLRAHAGETKRKKKFKC 195
+G++PYECKE C + F + +L +H R H GE +
Sbjct: 2 SSGSSGSGKKPYECKE-CRKTFIQIGHLNQHKRVHTGE----RSSGP 43
Score = 50.6 bits (122), Expect = 1e-08
Identities = 14/43 (32%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Query: 123 HERLH-AEKLYECDICKNRFPSSGAMKKHRRKHTGERPYECKE 164
+K YEC C+ F G + +H+R HTGER
Sbjct: 3 SGSSGSGKKPYECKECRKTFIQIGHLNQHKRVHTGERSSGPSS 45
Score = 49.8 bits (120), Expect = 2e-08
Identities = 16/43 (37%), Positives = 19/43 (44%)
Query: 234 RHMKTHSGVKPHVCEYCEKAFIQASQLKAHMFHHTGENGHTCE 276
+ SG KP+ C+ C K FIQ L H HTGE
Sbjct: 2 SSGSSGSGKKPYECKECRKTFIQIGHLNQHKRVHTGERSSGPS 44
Score = 49.5 bits (119), Expect = 3e-08
Identities = 15/38 (39%), Positives = 20/38 (52%)
Query: 295 IHEGADPYQCDICRKTFIRKEDLTRHCLLHTGVKPHKC 332
G PY+C CRKTFI+ L +H +HTG +
Sbjct: 6 SGSGKKPYECKECRKTFIQIGHLNQHKRVHTGERSSGP 43
Score = 45.6 bits (109), Expect = 8e-07
Identities = 12/38 (31%), Positives = 15/38 (39%)
Query: 324 HTGVKPHKCPICTKGFTMKSSLKIHLLTHTKEPPKSCE 361
+G KP++C C K F L H HT E
Sbjct: 7 GSGKKPYECKECRKTFIQIGHLNQHKRVHTGERSSGPS 44
Score = 40.6 bits (96), Expect = 4e-05
Identities = 10/43 (23%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Query: 262 AHMFHHTGENGHTCELCNKTFNRKARLELHMKYIHEGADPYQC 304
+ +G+ + C+ C KTF + L H + +H G
Sbjct: 2 SSGSSGSGKKPYECKECRKTFIQIGHLNQHKR-VHTGERSSGP 43
Score = 36.7 bits (86), Expect = 9e-04
Identities = 8/31 (25%), Positives = 15/31 (48%)
Query: 348 HLLTHTKEPPKSCEVCGRAFIRQDCLIRHLR 378
+ + + P C+ C + FI+ L +H R
Sbjct: 3 SGSSGSGKKPYECKECRKTFIQIGHLNQHKR 33
Score = 31.4 bits (72), Expect = 0.081
Identities = 9/32 (28%), Positives = 14/32 (43%), Gaps = 4/32 (12%)
Query: 76 KVCGRVFNRKDNLREHLRAHAGETKRKKKFKC 107
K C + F + +L +H R H GE +
Sbjct: 16 KECRKTFIQIGHLNQHKRVHTGE----RSSGP 43
Score = 30.2 bits (69), Expect = 0.23
Identities = 12/70 (17%), Positives = 23/70 (32%), Gaps = 28/70 (40%)
Query: 179 HLRAHAGETKRKKKFKCDKCEKQFYGLTLLRIHERLHGLIERTCYARFAAKETLNRHMKT 238
+ +G+ K ++C +C K F + H LN+H +
Sbjct: 3 SGSSGSGK----KPYECKECRKTF--------IQIGH----------------LNQHKRV 34
Query: 239 HSGVKPHVCE 248
H+G +
Sbjct: 35 HTGERSSGPS 44
>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 44
Score = 57.5 bits (140), Expect = 4e-11
Identities = 17/37 (45%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 150 HRRKHTGERPYECKEVCGRVFNRKDNLREHLRAHAGE 186
+GE+PYEC E CG+ F K L H R HAG
Sbjct: 3 SGSSGSGEKPYECNE-CGKAFIWKSLLIVHERTHAGV 38
Score = 56.0 bits (136), Expect = 1e-10
Identities = 16/42 (38%), Positives = 20/42 (47%)
Query: 234 RHMKTHSGVKPHVCEYCEKAFIQASQLKAHMFHHTGENGHTC 275
+ SG KP+ C C KAFI S L H H G +G +
Sbjct: 2 SSGSSGSGEKPYECNECGKAFIWKSLLIVHERTHAGVSGPSS 43
Score = 51.8 bits (125), Expect = 5e-09
Identities = 14/42 (33%), Positives = 18/42 (42%)
Query: 319 RHCLLHTGVKPHKCPICTKGFTMKSSLKIHLLTHTKEPPKSC 360
+G KP++C C K F KS L +H TH S
Sbjct: 2 SSGSSGSGEKPYECNECGKAFIWKSLLIVHERTHAGVSGPSS 43
Score = 49.5 bits (119), Expect = 3e-08
Identities = 14/38 (36%), Positives = 16/38 (42%)
Query: 295 IHEGADPYQCDICRKTFIRKEDLTRHCLLHTGVKPHKC 332
G PY+C+ C K FI K L H H GV
Sbjct: 6 SGSGEKPYECNECGKAFIWKSLLIVHERTHAGVSGPSS 43
Score = 46.8 bits (112), Expect = 2e-07
Identities = 11/41 (26%), Positives = 13/41 (31%), Gaps = 1/41 (2%)
Query: 123 HERLH-AEKLYECDICKNRFPSSGAMKKHRRKHTGERPYEC 162
EK YEC+ C F + H R H G
Sbjct: 3 SGSSGSGEKPYECNECGKAFIWKSLLIVHERTHAGVSGPSS 43
Score = 37.9 bits (89), Expect = 3e-04
Identities = 11/43 (25%), Positives = 17/43 (39%), Gaps = 1/43 (2%)
Query: 262 AHMFHHTGENGHTCELCNKTFNRKARLELHMKYIHEGADPYQC 304
+ +GE + C C K F K+ L +H + H G
Sbjct: 2 SSGSSGSGEKPYECNECGKAFIWKSLLIVHER-THAGVSGPSS 43
Score = 37.5 bits (88), Expect = 4e-04
Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 5/45 (11%)
Query: 91 HLRAHAGETKRKKKFKCDKCEKQFYGLTLLRIHERLH-AEKLYEC 134
+ +GE K ++C++C K F +LL +HER H
Sbjct: 3 SGSSGSGE----KPYECNECGKAFIWKSLLIVHERTHAGVSGPSS 43
Score = 34.8 bits (81), Expect = 0.005
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 348 HLLTHTKEPPKSCEVCGRAFIRQDCLIRHLR 378
+ + E P C CG+AFI + LI H R
Sbjct: 3 SGSSGSGEKPYECNECGKAFIWKSLLIVHER 33
Score = 29.4 bits (67), Expect = 0.31
Identities = 10/21 (47%), Positives = 11/21 (52%)
Query: 78 CGRVFNRKDNLREHLRAHAGE 98
CG+ F K L H R HAG
Sbjct: 18 CGKAFIWKSLLIVHERTHAGV 38
>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 42
Score = 57.2 bits (139), Expect = 5e-11
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 150 HRRKHTGERPYECKEVCGRVFNRKDNLREHLRAHAGE 186
GE+PY C + CG+ F++K +L H+R H G
Sbjct: 2 SSGSSGGEKPYRCDQ-CGKAFSQKGSLIVHIRVHTGS 37
Score = 48.7 bits (117), Expect = 5e-08
Identities = 14/36 (38%), Positives = 18/36 (50%)
Query: 235 HMKTHSGVKPHVCEYCEKAFIQASQLKAHMFHHTGE 270
+ G KP+ C+ C KAF Q L H+ HTG
Sbjct: 2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVHTGS 37
Score = 47.6 bits (114), Expect = 1e-07
Identities = 14/38 (36%), Positives = 19/38 (50%)
Query: 320 HCLLHTGVKPHKCPICTKGFTMKSSLKIHLLTHTKEPP 357
G KP++C C K F+ K SL +H+ HT P
Sbjct: 2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVHTGSGP 39
Score = 47.6 bits (114), Expect = 1e-07
Identities = 14/39 (35%), Positives = 16/39 (41%), Gaps = 1/39 (2%)
Query: 123 HERLH-AEKLYECDICKNRFPSSGAMKKHRRKHTGERPY 160
EK Y CD C F G++ H R HTG P
Sbjct: 2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVHTGSGPS 40
Score = 43.7 bits (104), Expect = 3e-06
Identities = 15/36 (41%), Positives = 18/36 (50%)
Query: 295 IHEGADPYQCDICRKTFIRKEDLTRHCLLHTGVKPH 330
G PY+CD C K F +K L H +HTG P
Sbjct: 5 SSGGEKPYRCDQCGKAFSQKGSLIVHIRVHTGSGPS 40
Score = 39.1 bits (92), Expect = 1e-04
Identities = 12/41 (29%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Query: 262 AHMFHHTGENGHTCELCNKTFNRKARLELHMKYIHEGADPY 302
GE + C+ C K F++K L +H++ +H G+ P
Sbjct: 1 GSSGSSGGEKPYRCDQCGKAFSQKGSLIVHIR-VHTGSGPS 40
Score = 35.2 bits (82), Expect = 0.003
Identities = 12/43 (27%), Positives = 18/43 (41%), Gaps = 5/43 (11%)
Query: 91 HLRAHAGETKRKKKFKCDKCEKQFYGLTLLRIHERLH-AEKLY 132
+ GE K ++CD+C K F L +H R+H
Sbjct: 2 SSGSSGGE----KPYRCDQCGKAFSQKGSLIVHIRVHTGSGPS 40
Score = 34.1 bits (79), Expect = 0.008
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 348 HLLTHTKEPPKSCEVCGRAFIRQDCLIRHLR 378
+ E P C+ CG+AF ++ LI H+R
Sbjct: 2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVHIR 32
Score = 29.5 bits (67), Expect = 0.30
Identities = 9/21 (42%), Positives = 14/21 (66%)
Query: 78 CGRVFNRKDNLREHLRAHAGE 98
CG+ F++K +L H+R H G
Sbjct: 17 CGKAFSQKGSLIVHIRVHTGS 37
>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 57.2 bits (139), Expect = 5e-11
Identities = 15/46 (32%), Positives = 19/46 (41%), Gaps = 5/46 (10%)
Query: 150 HRRKHTGERPYECKEVCGRVFNRKDNLREHLRAHAGETKRKKKFKC 195
TGE+P +C E CG+ F K L H R H + K
Sbjct: 3 SGSSGTGEKPCKCTE-CGKAFCWKSQLIMHQRTHVDD----KHSGP 43
Score = 49.9 bits (120), Expect = 2e-08
Identities = 13/42 (30%), Positives = 16/42 (38%)
Query: 234 RHMKTHSGVKPHVCEYCEKAFIQASQLKAHMFHHTGENGHTC 275
+ +G KP C C KAF SQL H H +
Sbjct: 2 SSGSSGTGEKPCKCTECGKAFCWKSQLIMHQRTHVDDKHSGP 43
Score = 49.9 bits (120), Expect = 2e-08
Identities = 15/37 (40%), Positives = 17/37 (45%)
Query: 324 HTGVKPHKCPICTKGFTMKSSLKIHLLTHTKEPPKSC 360
TG KP KC C K F KS L +H TH +
Sbjct: 7 GTGEKPCKCTECGKAFCWKSQLIMHQRTHVDDKHSGP 43
Score = 47.2 bits (113), Expect = 2e-07
Identities = 11/37 (29%), Positives = 12/37 (32%)
Query: 296 HEGADPYQCDICRKTFIRKEDLTRHCLLHTGVKPHKC 332
G P +C C K F K L H H K
Sbjct: 7 GTGEKPCKCTECGKAFCWKSQLIMHQRTHVDDKHSGP 43
Score = 46.0 bits (110), Expect = 5e-07
Identities = 8/41 (19%), Positives = 13/41 (31%), Gaps = 1/41 (2%)
Query: 123 HERLH-AEKLYECDICKNRFPSSGAMKKHRRKHTGERPYEC 162
EK +C C F + H+R H ++
Sbjct: 3 SGSSGTGEKPCKCTECGKAFCWKSQLIMHQRTHVDDKHSGP 43
Score = 40.6 bits (96), Expect = 4e-05
Identities = 11/38 (28%), Positives = 15/38 (39%), Gaps = 1/38 (2%)
Query: 267 HTGENGHTCELCNKTFNRKARLELHMKYIHEGADPYQC 304
TGE C C K F K++L +H + H
Sbjct: 7 GTGEKPCKCTECGKAFCWKSQLIMHQR-THVDDKHSGP 43
Score = 38.7 bits (91), Expect = 2e-04
Identities = 13/45 (28%), Positives = 19/45 (42%), Gaps = 5/45 (11%)
Query: 91 HLRAHAGETKRKKKFKCDKCEKQFYGLTLLRIHERLHA-EKLYEC 134
+ GE K KC +C K F + L +H+R H +K
Sbjct: 3 SGSSGTGE----KPCKCTECGKAFCWKSQLIMHQRTHVDDKHSGP 43
Score = 36.8 bits (86), Expect = 0.001
Identities = 12/31 (38%), Positives = 15/31 (48%)
Query: 348 HLLTHTKEPPKSCEVCGRAFIRQDCLIRHLR 378
+ T E P C CG+AF + LI H R
Sbjct: 3 SGSSGTGEKPCKCTECGKAFCWKSQLIMHQR 33
Score = 31.8 bits (73), Expect = 0.060
Identities = 9/30 (30%), Positives = 11/30 (36%), Gaps = 4/30 (13%)
Query: 78 CGRVFNRKDNLREHLRAHAGETKRKKKFKC 107
CG+ F K L H R H + K
Sbjct: 18 CGKAFCWKSQLIMHQRTHVDD----KHSGP 43
>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 57.2 bits (139), Expect = 5e-11
Identities = 14/47 (29%), Positives = 19/47 (40%), Gaps = 5/47 (10%)
Query: 149 KHRRKHTGERPYECKEVCGRVFNRKDNLREHLRAHAGETKRKKKFKC 195
GE+PY+C E CG+ F+ L +H H E K
Sbjct: 2 SSGSSGEGEKPYQCSE-CGKSFSGSYRLTQHWITHTRE----KPSGP 43
Score = 50.2 bits (121), Expect = 1e-08
Identities = 16/38 (42%), Positives = 19/38 (50%)
Query: 295 IHEGADPYQCDICRKTFIRKEDLTRHCLLHTGVKPHKC 332
EG PYQC C K+F LT+H + HT KP
Sbjct: 6 SGEGEKPYQCSECGKSFSGSYRLTQHWITHTREKPSGP 43
Score = 47.9 bits (115), Expect = 1e-07
Identities = 12/41 (29%), Positives = 16/41 (39%), Gaps = 1/41 (2%)
Query: 123 HERLHA-EKLYECDICKNRFPSSGAMKKHRRKHTGERPYEC 162
EK Y+C C F S + +H HT E+P
Sbjct: 3 SGSSGEGEKPYQCSECGKSFSGSYRLTQHWITHTREKPSGP 43
Score = 47.2 bits (113), Expect = 2e-07
Identities = 12/41 (29%), Positives = 17/41 (41%)
Query: 235 HMKTHSGVKPHVCEYCEKAFIQASQLKAHMFHHTGENGHTC 275
+ G KP+ C C K+F + +L H HT E
Sbjct: 3 SGSSGEGEKPYQCSECGKSFSGSYRLTQHWITHTREKPSGP 43
Score = 46.8 bits (112), Expect = 2e-07
Identities = 14/41 (34%), Positives = 19/41 (46%)
Query: 320 HCLLHTGVKPHKCPICTKGFTMKSSLKIHLLTHTKEPPKSC 360
G KP++C C K F+ L H +THT+E P
Sbjct: 3 SGSSGEGEKPYQCSECGKSFSGSYRLTQHWITHTREKPSGP 43
Score = 41.0 bits (97), Expect = 3e-05
Identities = 11/38 (28%), Positives = 14/38 (36%), Gaps = 1/38 (2%)
Query: 267 HTGENGHTCELCNKTFNRKARLELHMKYIHEGADPYQC 304
GE + C C K+F+ RL H H P
Sbjct: 7 GEGEKPYQCSECGKSFSGSYRLTQHWI-THTREKPSGP 43
Score = 37.5 bits (88), Expect = 5e-04
Identities = 8/31 (25%), Positives = 12/31 (38%)
Query: 348 HLLTHTKEPPKSCEVCGRAFIRQDCLIRHLR 378
+ E P C CG++F L +H
Sbjct: 3 SGSSGEGEKPYQCSECGKSFSGSYRLTQHWI 33
Score = 30.6 bits (70), Expect = 0.13
Identities = 8/32 (25%), Positives = 11/32 (34%), Gaps = 4/32 (12%)
Query: 76 KVCGRVFNRKDNLREHLRAHAGETKRKKKFKC 107
CG+ F+ L +H H E K
Sbjct: 16 SECGKSFSGSYRLTQHWITHTRE----KPSGP 43
Score = 29.8 bits (68), Expect = 0.27
Identities = 13/69 (18%), Positives = 20/69 (28%), Gaps = 28/69 (40%)
Query: 179 HLRAHAGETKRKKKFKCDKCEKQFYGLTLLRIHERLHGLIERTCYARFAAKETLNRHMKT 238
+ GE K ++C +C K F+ L +H T
Sbjct: 3 SGSSGEGE----KPYQCSECGK------------------------SFSGSYRLTQHWIT 34
Query: 239 HSGVKPHVC 247
H+ KP
Sbjct: 35 HTREKPSGP 43
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET:
ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB:
3znf_A 4znf_A
Length = 57
Score = 57.0 bits (137), Expect = 8e-11
Identities = 22/57 (38%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 132 YECDICKNRFPSSGAMKKHRRKHTGERPYECKEVCGRVFNRKDNLREHLRAHAGETK 188
Y C+ C R +KKH R HT RPY C C F K NL +H+++ A K
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTY-CNFSFKTKGNLTKHMKSKAHSKK 57
Score = 53.2 bits (127), Expect = 2e-09
Identities = 15/54 (27%), Positives = 23/54 (42%)
Query: 302 YQCDICRKTFIRKEDLTRHCLLHTGVKPHKCPICTKGFTMKSSLKIHLLTHTKE 355
Y C+ C + L +H HT V+P+ C C F K +L H+ +
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHS 55
Score = 48.6 bits (115), Expect = 7e-08
Identities = 14/46 (30%), Positives = 21/46 (45%)
Query: 225 RFAAKETLNRHMKTHSGVKPHVCEYCEKAFIQASQLKAHMFHHTGE 270
R L +H++TH+ V+P+ C YC +F L HM
Sbjct: 10 RXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHS 55
Score = 46.6 bits (110), Expect = 5e-07
Identities = 14/56 (25%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Query: 104 KFKCDKCEKQFYGLTLLRIHERLH-AEKLYECDICKNRFPSSGAMKKHRRKHTGER 158
K+ C++C + ++L+ H R H + Y C C F + G + KH + +
Sbjct: 1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSK 56
Score = 46.2 bits (109), Expect = 6e-07
Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Query: 273 HTCELCNKTFNRKARLELHMKYIHEGADPYQCDICRKTFIRKEDLTRHCLLHTGVK 328
+ CE C + + L+ H++ H PY C C +F K +LT+H K
Sbjct: 2 YICEECGIRXKKPSMLKKHIR-THTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSK 56
Score = 45.1 bits (106), Expect = 1e-06
Identities = 14/56 (25%), Positives = 22/56 (39%), Gaps = 5/56 (8%)
Query: 160 YECKEVCGRVFNRKDNLREHLRAHAGETKRKKKFKCDKCEKQFYGLTLLRIHERLH 215
Y C+E CG + L++H+R H + + C C F L H +
Sbjct: 2 YICEE-CGIRXKKPSMLKKHIRTHTDV----RPYHCTYCNFSFKTKGNLTKHMKSK 52
Score = 45.1 bits (106), Expect = 1e-06
Identities = 18/49 (36%), Positives = 24/49 (48%)
Query: 245 HVCEYCEKAFIQASQLKAHMFHHTGENGHTCELCNKTFNRKARLELHMK 293
++CE C + S LK H+ HT + C CN +F K L HMK
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMK 50
Score = 42.8 bits (100), Expect = 9e-06
Identities = 15/49 (30%), Positives = 22/49 (44%)
Query: 330 HKCPICTKGFTMKSSLKIHLLTHTKEPPKSCEVCGRAFIRQDCLIRHLR 378
+ C C S LK H+ THT P C C +F + L +H++
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMK 50
Score = 40.1 bits (93), Expect = 9e-05
Identities = 13/54 (24%), Positives = 20/54 (37%), Gaps = 5/54 (9%)
Query: 78 CGRVFNRKDNLREHLRAHAGETKRKKKFKCDKCEKQFYGLTLLRIHERLHA-EK 130
CG + L++H+R H + + C C F L H + A K
Sbjct: 7 CGIRXKKPSMLKKHIRTHTDV----RPYHCTYCNFSFKTKGNLTKHMKSKAHSK 56
Score = 27.4 bits (60), Expect = 2.7
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 78 CGRVFNRKDNLREHLRAHAGETK 100
C F K NL +H+++ A K
Sbjct: 35 CNFSFKTKGNLTKHMKSKAHSKK 57
>2dj8_A Protein CBFA2T1; zinc finger MYND domain, protein MTG8, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.85.1.1
Length = 60
Score = 56.9 bits (137), Expect = 9e-11
Identities = 12/38 (31%), Positives = 16/38 (42%)
Query: 423 GEENLLRCSKCKVTFYCSKQHQTLDWKAHKINCNILSN 460
G + CS C YC Q DW+ H C+ S+
Sbjct: 22 GRKASETCSGCNTARYCGSFCQHKDWEKHHHICSGPSS 59
>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 56.4 bits (137), Expect = 1e-10
Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Query: 149 KHRRKHTGERPYECKEVCGRVFNRKDNLREHLRAHAGE 186
+ + ++C E CGR F K +L +H R H GE
Sbjct: 2 SSGSSGSSTKSHQCHE-CGRGFTLKSHLNQHQRIHTGE 38
Score = 50.2 bits (121), Expect = 2e-08
Identities = 13/37 (35%), Positives = 15/37 (40%)
Query: 234 RHMKTHSGVKPHVCEYCEKAFIQASQLKAHMFHHTGE 270
+ S K H C C + F S L H HTGE
Sbjct: 2 SSGSSGSSTKSHQCHECGRGFTLKSHLNQHQRIHTGE 38
Score = 49.9 bits (120), Expect = 2e-08
Identities = 15/37 (40%), Positives = 19/37 (51%)
Query: 324 HTGVKPHKCPICTKGFTMKSSLKIHLLTHTKEPPKSC 360
+ K H+C C +GFT+KS L H HT E P
Sbjct: 7 GSSTKSHQCHECGRGFTLKSHLNQHQRIHTGEKPSGP 43
Score = 47.2 bits (113), Expect = 2e-07
Identities = 12/38 (31%), Positives = 16/38 (42%)
Query: 295 IHEGADPYQCDICRKTFIRKEDLTRHCLLHTGVKPHKC 332
+QC C + F K L +H +HTG KP
Sbjct: 6 SGSSTKSHQCHECGRGFTLKSHLNQHQRIHTGEKPSGP 43
Score = 42.1 bits (100), Expect = 1e-05
Identities = 11/41 (26%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Query: 123 HERLHA-EKLYECDICKNRFPSSGAMKKHRRKHTGERPYEC 162
+ K ++C C F + +H+R HTGE+P
Sbjct: 3 SGSSGSSTKSHQCHECGRGFTLKSHLNQHQRIHTGEKPSGP 43
Score = 39.1 bits (92), Expect = 1e-04
Identities = 11/38 (28%), Positives = 15/38 (39%), Gaps = 1/38 (2%)
Query: 267 HTGENGHTCELCNKTFNRKARLELHMKYIHEGADPYQC 304
+ H C C + F K+ L H + IH G P
Sbjct: 7 GSSTKSHQCHECGRGFTLKSHLNQHQR-IHTGEKPSGP 43
Score = 37.1 bits (87), Expect = 6e-04
Identities = 8/31 (25%), Positives = 12/31 (38%)
Query: 348 HLLTHTKEPPKSCEVCGRAFIRQDCLIRHLR 378
+ + C CGR F + L +H R
Sbjct: 3 SGSSGSSTKSHQCHECGRGFTLKSHLNQHQR 33
Score = 33.7 bits (78), Expect = 0.010
Identities = 10/45 (22%), Positives = 18/45 (40%), Gaps = 5/45 (11%)
Query: 91 HLRAHAGETKRKKKFKCDKCEKQFYGLTLLRIHERLH-AEKLYEC 134
+ + K +C +C + F + L H+R+H EK
Sbjct: 3 SGSSGSST----KSHQCHECGRGFTLKSHLNQHQRIHTGEKPSGP 43
Score = 31.4 bits (72), Expect = 0.075
Identities = 11/21 (52%), Positives = 13/21 (61%)
Query: 78 CGRVFNRKDNLREHLRAHAGE 98
CGR F K +L +H R H GE
Sbjct: 18 CGRGFTLKSHLNQHQRIHTGE 38
Score = 31.0 bits (71), Expect = 0.096
Identities = 12/69 (17%), Positives = 20/69 (28%), Gaps = 28/69 (40%)
Query: 179 HLRAHAGETKRKKKFKCDKCEKQFYGLTLLRIHERLHGLIERTCYARFAAKETLNRHMKT 238
+ + K +C +C + F K LN+H +
Sbjct: 3 SGSSGSST----KSHQCHECGR------------------------GFTLKSHLNQHQRI 34
Query: 239 HSGVKPHVC 247
H+G KP
Sbjct: 35 HTGEKPSGP 43
>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 55.6 bits (135), Expect = 2e-10
Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 150 HRRKHTGERPYECKEVCGRVFNRKDNLREHLRAHAGE 186
GE+PY+C+ CG F + +LR H+ H G
Sbjct: 2 SSGSSGGEKPYKCET-CGARFVQVAHLRAHVLIHTGS 37
Score = 55.2 bits (134), Expect = 3e-10
Identities = 14/36 (38%), Positives = 20/36 (55%)
Query: 235 HMKTHSGVKPHVCEYCEKAFIQASQLKAHMFHHTGE 270
+ G KP+ CE C F+Q + L+AH+ HTG
Sbjct: 2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVLIHTGS 37
Score = 49.4 bits (119), Expect = 3e-08
Identities = 13/34 (38%), Positives = 17/34 (50%)
Query: 324 HTGVKPHKCPICTKGFTMKSSLKIHLLTHTKEPP 357
G KP+KC C F + L+ H+L HT P
Sbjct: 6 SGGEKPYKCETCGARFVQVAHLRAHVLIHTGSGP 39
Score = 47.1 bits (113), Expect = 2e-07
Identities = 12/39 (30%), Positives = 16/39 (41%), Gaps = 1/39 (2%)
Query: 123 HERLHA-EKLYECDICKNRFPSSGAMKKHRRKHTGERPY 160
EK Y+C+ C RF ++ H HTG P
Sbjct: 2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVLIHTGSGPS 40
Score = 43.3 bits (103), Expect = 4e-06
Identities = 13/36 (36%), Positives = 18/36 (50%)
Query: 295 IHEGADPYQCDICRKTFIRKEDLTRHCLLHTGVKPH 330
G PY+C+ C F++ L H L+HTG P
Sbjct: 5 SSGGEKPYKCETCGARFVQVAHLRAHVLIHTGSGPS 40
Score = 39.4 bits (93), Expect = 1e-04
Identities = 13/40 (32%), Positives = 17/40 (42%), Gaps = 1/40 (2%)
Query: 263 HMFHHTGENGHTCELCNKTFNRKARLELHMKYIHEGADPY 302
GE + CE C F + A L H+ IH G+ P
Sbjct: 2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVL-IHTGSGPS 40
Score = 37.1 bits (87), Expect = 6e-04
Identities = 9/31 (29%), Positives = 13/31 (41%)
Query: 348 HLLTHTKEPPKSCEVCGRAFIRQDCLIRHLR 378
+ E P CE CG F++ L H+
Sbjct: 2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVL 32
Score = 36.0 bits (84), Expect = 0.001
Identities = 11/37 (29%), Positives = 17/37 (45%), Gaps = 4/37 (10%)
Query: 179 HLRAHAGETKRKKKFKCDKCEKQFYGLTLLRIHERLH 215
+ GE K +KC+ C +F + LR H +H
Sbjct: 2 SSGSSGGE----KPYKCETCGARFVQVAHLRAHVLIH 34
Score = 31.0 bits (71), Expect = 0.093
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 76 KVCGRVFNRKDNLREHLRAHAGE 98
+ CG F + +LR H+ H G
Sbjct: 15 ETCGARFVQVAHLRAHVLIHTGS 37
>2jw6_A Deformed epidermal autoregulatory factor 1 homolo; zinc binding
domain, transcription, alternative splicing, DI
mutation, DNA-binding; NMR {Homo sapiens} SCOP: g.85.1.1
Length = 52
Score = 56.0 bits (135), Expect = 2e-10
Identities = 13/34 (38%), Positives = 16/34 (47%)
Query: 423 GEENLLRCSKCKVTFYCSKQHQTLDWKAHKINCN 456
G E + C+ C YCS Q DWK H+ C
Sbjct: 16 GREAMSECTGCHKVNYCSTFCQRKDWKDHQHICG 49
>2od1_A Protein CBFA2T1; zinc finger, cross-braced topology, metal binding
protein; NMR {Homo sapiens}
Length = 60
Score = 56.1 bits (135), Expect = 2e-10
Identities = 11/34 (32%), Positives = 13/34 (38%)
Query: 423 GEENLLRCSKCKVTFYCSKQHQTLDWKAHKINCN 456
G + CS C YC Q DW+ H C
Sbjct: 20 GRKASETCSGCNTARYCGSFCQHKDWEKHHHICG 53
>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 47
Score = 55.7 bits (135), Expect = 2e-10
Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 6/47 (12%)
Query: 150 HRRKHTGERPYECKEVCGRVFNRKDNLREHLRA-HAGETKRKKKFKC 195
TG++PYEC E CG+ F + +L H R H GE K
Sbjct: 3 SGSSGTGKKPYECIE-CGKAFIQNTSLIRHWRYYHTGE----KPSGP 44
Score = 46.8 bits (112), Expect = 3e-07
Identities = 13/42 (30%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
Query: 123 HERLH-AEKLYECDICKNRFPSSGAMKKHRRK-HTGERPYEC 162
+K YEC C F + ++ +H R HTGE+P
Sbjct: 3 SGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYHTGEKPSGP 44
Score = 46.4 bits (111), Expect = 3e-07
Identities = 16/40 (40%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Query: 295 IHEGADPYQCDICRKTFIRKEDLTRHC-LLHTGVKPHKCP 333
G PY+C C K FI+ L RH HTG KP
Sbjct: 6 SGTGKKPYECIECGKAFIQNTSLIRHWRYYHTGEKPSGPS 45
Score = 46.0 bits (110), Expect = 5e-07
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 235 HMKTHSGVKPHVCEYCEKAFIQASQLKAHM-FHHTGENGHTC 275
+ +G KP+ C C KAFIQ + L H ++HTGE
Sbjct: 3 SGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYHTGEKPSGP 44
Score = 45.3 bits (108), Expect = 1e-06
Identities = 12/43 (27%), Positives = 17/43 (39%)
Query: 262 AHMFHHTGENGHTCELCNKTFNRKARLELHMKYIHEGADPYQC 304
+ TG+ + C C K F + L H +Y H G P
Sbjct: 2 SSGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYHTGEKPSGP 44
Score = 42.6 bits (101), Expect = 9e-06
Identities = 15/42 (35%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 320 HCLLHTGVKPHKCPICTKGFTMKSSLKIHL-LTHTKEPPKSC 360
TG KP++C C K F +SL H HT E P
Sbjct: 3 SGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYHTGEKPSGP 44
Score = 39.9 bits (94), Expect = 7e-05
Identities = 14/34 (41%), Positives = 18/34 (52%)
Query: 348 HLLTHTKEPPKSCEVCGRAFIRQDCLIRHLRQKH 381
+ T + P C CG+AFI+ LIRH R H
Sbjct: 3 SGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYH 36
Score = 26.8 bits (60), Expect = 3.9
Identities = 10/31 (32%), Positives = 13/31 (41%), Gaps = 5/31 (16%)
Query: 78 CGRVFNRKDNLREHLRA-HAGETKRKKKFKC 107
CG+ F + +L H R H GE K
Sbjct: 18 CGKAFIQNTSLIRHWRYYHTGE----KPSGP 44
>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 42
Score = 55.2 bits (134), Expect = 2e-10
Identities = 14/37 (37%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Query: 150 HRRKHTGERPYECKEVCGRVFNRKDNLREHLRAHAGE 186
GE+PY C+ CG F L+ HLR H G
Sbjct: 2 SSGSSGGEKPYPCEI-CGTRFRHLQTLKSHLRIHTGS 37
Score = 55.2 bits (134), Expect = 3e-10
Identities = 13/36 (36%), Positives = 17/36 (47%)
Query: 235 HMKTHSGVKPHVCEYCEKAFIQASQLKAHMFHHTGE 270
+ G KP+ CE C F LK+H+ HTG
Sbjct: 2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHLRIHTGS 37
Score = 50.6 bits (122), Expect = 1e-08
Identities = 15/39 (38%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
Query: 123 HERLHA-EKLYECDICKNRFPSSGAMKKHRRKHTGERPY 160
EK Y C+IC RF +K H R HTG P
Sbjct: 2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHLRIHTGSGPS 40
Score = 50.2 bits (121), Expect = 1e-08
Identities = 14/34 (41%), Positives = 16/34 (47%)
Query: 324 HTGVKPHKCPICTKGFTMKSSLKIHLLTHTKEPP 357
G KP+ C IC F +LK HL HT P
Sbjct: 6 SGGEKPYPCEICGTRFRHLQTLKSHLRIHTGSGP 39
Score = 41.7 bits (99), Expect = 2e-05
Identities = 13/35 (37%), Positives = 16/35 (45%)
Query: 296 HEGADPYQCDICRKTFIRKEDLTRHCLLHTGVKPH 330
G PY C+IC F + L H +HTG P
Sbjct: 6 SGGEKPYPCEICGTRFRHLQTLKSHLRIHTGSGPS 40
Score = 41.3 bits (98), Expect = 2e-05
Identities = 12/41 (29%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Query: 262 AHMFHHTGENGHTCELCNKTFNRKARLELHMKYIHEGADPY 302
GE + CE+C F L+ H++ IH G+ P
Sbjct: 1 GSSGSSGGEKPYPCEICGTRFRHLQTLKSHLR-IHTGSGPS 40
Score = 37.5 bits (88), Expect = 4e-04
Identities = 11/31 (35%), Positives = 13/31 (41%)
Query: 348 HLLTHTKEPPKSCEVCGRAFIRQDCLIRHLR 378
+ E P CE+CG F L HLR
Sbjct: 2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHLR 32
Score = 35.2 bits (82), Expect = 0.003
Identities = 13/67 (19%), Positives = 20/67 (29%), Gaps = 28/67 (41%)
Query: 179 HLRAHAGETKRKKKFKCDKCEKQFYGLTLLRIHERLHGLIERTCYARFAAKETLNRHMKT 238
+ GE K + C+ C RF +TL H++
Sbjct: 2 SSGSSGGE----KPYPCEICGT------------------------RFRHLQTLKSHLRI 33
Query: 239 HSGVKPH 245
H+G P
Sbjct: 34 HTGSGPS 40
Score = 32.1 bits (74), Expect = 0.042
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 76 KVCGRVFNRKDNLREHLRAHAGE 98
++CG F L+ HLR H G
Sbjct: 15 EICGTRFRHLQTLKSHLRIHTGS 37
>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 54.9 bits (133), Expect = 4e-10
Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Query: 150 HRRKHTGERPYECKEVCGRVFNRKDNLREHLRAHAGE 186
+GE+ + C E CG+ F LR H R H GE
Sbjct: 3 SGSSGSGEKSHTCDE-CGKNFCYISALRIHQRVHMGE 38
Score = 51.4 bits (124), Expect = 6e-09
Identities = 14/36 (38%), Positives = 17/36 (47%)
Query: 235 HMKTHSGVKPHVCEYCEKAFIQASQLKAHMFHHTGE 270
+ SG K H C+ C K F S L+ H H GE
Sbjct: 3 SGSSGSGEKSHTCDECGKNFCYISALRIHQRVHMGE 38
Score = 49.1 bits (118), Expect = 4e-08
Identities = 13/42 (30%), Positives = 16/42 (38%)
Query: 320 HCLLHTGVKPHKCPICTKGFTMKSSLKIHLLTHTKEPPKSCE 361
+G K H C C K F S+L+IH H E
Sbjct: 3 SGSSGSGEKSHTCDECGKNFCYISALRIHQRVHMGEKCSGPS 44
Score = 44.1 bits (105), Expect = 2e-06
Identities = 12/41 (29%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Query: 123 HERLH-AEKLYECDICKNRFPSSGAMKKHRRKHTGERPYEC 162
EK + CD C F A++ H+R H GE+
Sbjct: 3 SGSSGSGEKSHTCDECGKNFCYISALRIHQRVHMGEKCSGP 43
Score = 43.3 bits (103), Expect = 4e-06
Identities = 11/38 (28%), Positives = 13/38 (34%)
Query: 295 IHEGADPYQCDICRKTFIRKEDLTRHCLLHTGVKPHKC 332
G + CD C K F L H +H G K
Sbjct: 6 SGSGEKSHTCDECGKNFCYISALRIHQRVHMGEKCSGP 43
Score = 39.5 bits (93), Expect = 1e-04
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 5/46 (10%)
Query: 91 HLRAHAGETKRKKKFKCDKCEKQFYGLTLLRIHERLHA-EKLYECD 135
+ +GE K CD+C K F ++ LRIH+R+H EK
Sbjct: 3 SGSSGSGE----KSHTCDECGKNFCYISALRIHQRVHMGEKCSGPS 44
Score = 38.3 bits (90), Expect = 3e-04
Identities = 12/43 (27%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Query: 263 HMFHHTGENGHTCELCNKTFNRKARLELHMKYIHEGADPYQCD 305
+GE HTC+ C K F + L +H + +H G
Sbjct: 3 SGSSGSGEKSHTCDECGKNFCYISALRIHQR-VHMGEKCSGPS 44
Score = 35.3 bits (82), Expect = 0.003
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 4/37 (10%)
Query: 179 HLRAHAGETKRKKKFKCDKCEKQFYGLTLLRIHERLH 215
+ +GE K CD+C K F ++ LRIH+R+H
Sbjct: 3 SGSSGSGE----KSHTCDECGKNFCYISALRIHQRVH 35
Score = 33.3 bits (77), Expect = 0.014
Identities = 8/31 (25%), Positives = 13/31 (41%)
Query: 348 HLLTHTKEPPKSCEVCGRAFIRQDCLIRHLR 378
+ + E +C+ CG+ F L H R
Sbjct: 3 SGSSGSGEKSHTCDECGKNFCYISALRIHQR 33
Score = 29.9 bits (68), Expect = 0.31
Identities = 10/21 (47%), Positives = 11/21 (52%)
Query: 78 CGRVFNRKDNLREHLRAHAGE 98
CG+ F LR H R H GE
Sbjct: 18 CGKNFCYISALRIHQRVHMGE 38
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 73
Score = 55.8 bits (134), Expect = 4e-10
Identities = 15/72 (20%), Positives = 22/72 (30%), Gaps = 8/72 (11%)
Query: 231 TLNRHMKTHSGVKPHVCEYCEKAFIQASQLKAHMFHHTGENGHTCELCNKTFNRKARLEL 290
+ + K H G + C C FI+ S + CE C K ++A L
Sbjct: 5 SSGKRQKIHLGDRSQKCSKCGIIFIRRS-------TLSRRKTPMCEKCRKDSCQEAALNK 57
Query: 291 HMKYIHEGADPY 302
G
Sbjct: 58 DEG-NESGKKTS 68
Score = 55.8 bits (134), Expect = 4e-10
Identities = 20/73 (27%), Positives = 29/73 (39%), Gaps = 12/73 (16%)
Query: 143 SSGAMKKHRRKHTGERPYECKEVCGRVFNRKDNLREHLRAHAGETKRKKKFKCDKCEKQF 202
SSG+ K ++ H G+R +C + CG +F R+ L K C+KC K
Sbjct: 2 SSGSSGKRQKIHLGDRSQKCSK-CGIIFIRRSTLSRR-----------KTPMCEKCRKDS 49
Query: 203 YGLTLLRIHERLH 215
L E
Sbjct: 50 CQEAALNKDEGNE 62
Score = 51.6 bits (123), Expect = 1e-08
Identities = 14/74 (18%), Positives = 23/74 (31%), Gaps = 8/74 (10%)
Query: 257 ASQLKAHMFHHTGENGHTCELCNKTFNRKARLELHMKYIHEGADPYQCDICRKTFIRKED 316
+ H G+ C C F R++ L C+ CRK ++
Sbjct: 3 SGSSGKRQKIHLGDRSQKCSKCGIIFIRRSTLSRR--------KTPMCEKCRKDSCQEAA 54
Query: 317 LTRHCLLHTGVKPH 330
L + +G K
Sbjct: 55 LNKDEGNESGKKTS 68
Score = 50.8 bits (121), Expect = 2e-08
Identities = 11/62 (17%), Positives = 22/62 (35%), Gaps = 7/62 (11%)
Query: 317 LTRHCLLHTGVKPHKCPICTKGFTMKSSLKIHLLTHTKEPPKSCEVCGRAFIRQDCLIRH 376
+ +H G + KC C F +S+ ++ CE C + ++ L +
Sbjct: 6 SGKRQKIHLGDRSQKCSKCGIIFIRRST-------LSRRKTPMCEKCRKDSCQEAALNKD 58
Query: 377 LR 378
Sbjct: 59 EG 60
Score = 48.9 bits (116), Expect = 9e-08
Identities = 9/69 (13%), Positives = 25/69 (36%), Gaps = 9/69 (13%)
Query: 120 LRIHERLH-AEKLYECDICKNRFPSSGAMKKHRRKHTGERPYECKEVCGRVFNRKDNLRE 178
+++H ++ +C C F R + + C++ C + ++ L +
Sbjct: 6 SGKRQKIHLGDRSQKCSKCGIIF-------IRRSTLSRRKTPMCEK-CRKDSCQEAALNK 57
Query: 179 HLRAHAGET 187
+G+
Sbjct: 58 DEGNESGKK 66
Score = 48.9 bits (116), Expect = 1e-07
Identities = 16/74 (21%), Positives = 24/74 (32%), Gaps = 8/74 (10%)
Query: 284 RKARLELHMKYIHEGADPYQCDICRKTFIRKEDLTRHCLLHTGVKPHKCPICTKGFTMKS 343
K IH G +C C FIR+ L+R K C C K ++
Sbjct: 2 SSGSSGKRQK-IHLGDRSQKCSKCGIIFIRRSTLSRR-------KTPMCEKCRKDSCQEA 53
Query: 344 SLKIHLLTHTKEPP 357
+L + +
Sbjct: 54 ALNKDEGNESGKKT 67
Score = 45.8 bits (108), Expect = 1e-06
Identities = 14/74 (18%), Positives = 26/74 (35%), Gaps = 10/74 (13%)
Query: 87 NLREHLRAHAGETKRKKKFKCDKCEKQFYGLTLLRIHERLHAEKLYECDICKNRFPSSGA 146
+ + + H G+ + KC KC F + L K C+ C+ A
Sbjct: 5 SSGKRQKIHLGD----RSQKCSKCGIIFIRRS------TLSRRKTPMCEKCRKDSCQEAA 54
Query: 147 MKKHRRKHTGERPY 160
+ K +G++
Sbjct: 55 LNKDEGNESGKKTS 68
Score = 32.7 bits (74), Expect = 0.050
Identities = 10/34 (29%), Positives = 13/34 (38%)
Query: 343 SSLKIHLLTHTKEPPKSCEVCGRAFIRQDCLIRH 376
S H + + C CG FIR+ L R
Sbjct: 4 GSSGKRQKIHLGDRSQKCSKCGIIFIRRSTLSRR 37
Score = 29.6 bits (66), Expect = 0.65
Identities = 9/64 (14%), Positives = 23/64 (35%), Gaps = 12/64 (18%)
Query: 36 GEKTVPGHLCKGCYRIFTSQGYMLLSYKSKEEEKQICTYIKVCGRVFNRKDNLREHLRAH 95
G+++ C C IF + + + +C + C + ++ L +
Sbjct: 15 GDRS---QKCSKCGIIFIRRSTL------SRRKTPMC---EKCRKDSCQEAALNKDEGNE 62
Query: 96 AGET 99
+G+
Sbjct: 63 SGKK 66
>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 54.5 bits (132), Expect = 5e-10
Identities = 13/42 (30%), Positives = 19/42 (45%), Gaps = 5/42 (11%)
Query: 154 HTGERPYECKEVCGRVFNRKDNLREHLRAHAGETKRKKKFKC 195
+GE+P+ C C + F+ K L H + HA E K
Sbjct: 5 SSGEKPFGCSC-CEKAFSSKSYLLVHQQTHAEE----KPSGP 41
Score = 51.8 bits (125), Expect = 5e-09
Identities = 15/37 (40%), Positives = 19/37 (51%)
Query: 324 HTGVKPHKCPICTKGFTMKSSLKIHLLTHTKEPPKSC 360
+G KP C C K F+ KS L +H TH +E P
Sbjct: 5 SSGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKPSGP 41
Score = 48.3 bits (116), Expect = 8e-08
Identities = 12/38 (31%), Positives = 13/38 (34%)
Query: 295 IHEGADPYQCDICRKTFIRKEDLTRHCLLHTGVKPHKC 332
G P+ C C K F K L H H KP
Sbjct: 4 GSSGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKPSGP 41
Score = 47.1 bits (113), Expect = 2e-07
Identities = 10/34 (29%), Positives = 16/34 (47%)
Query: 129 EKLYECDICKNRFPSSGAMKKHRRKHTGERPYEC 162
EK + C C+ F S + H++ H E+P
Sbjct: 8 EKPFGCSCCEKAFSSKSYLLVHQQTHAEEKPSGP 41
Score = 46.4 bits (111), Expect = 3e-07
Identities = 15/39 (38%), Positives = 15/39 (38%)
Query: 237 KTHSGVKPHVCEYCEKAFIQASQLKAHMFHHTGENGHTC 275
SG KP C CEKAF S L H H E
Sbjct: 3 SGSSGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKPSGP 41
Score = 41.8 bits (99), Expect = 1e-05
Identities = 11/38 (28%), Positives = 16/38 (42%), Gaps = 1/38 (2%)
Query: 267 HTGENGHTCELCNKTFNRKARLELHMKYIHEGADPYQC 304
+GE C C K F+ K+ L +H + H P
Sbjct: 5 SSGEKPFGCSCCEKAFSSKSYLLVHQQ-THAEEKPSGP 41
Score = 40.2 bits (95), Expect = 5e-05
Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 5/43 (11%)
Query: 93 RAHAGETKRKKKFKCDKCEKQFYGLTLLRIHERLHA-EKLYEC 134
+GE K F C CEK F + L +H++ HA EK
Sbjct: 3 SGSSGE----KPFGCSCCEKAFSSKSYLLVHQQTHAEEKPSGP 41
Score = 33.3 bits (77), Expect = 0.016
Identities = 12/35 (34%), Positives = 17/35 (48%), Gaps = 4/35 (11%)
Query: 181 RAHAGETKRKKKFKCDKCEKQFYGLTLLRIHERLH 215
+GE K F C CEK F + L +H++ H
Sbjct: 3 SGSSGE----KPFGCSCCEKAFSSKSYLLVHQQTH 33
Score = 32.9 bits (76), Expect = 0.020
Identities = 8/28 (28%), Positives = 13/28 (46%)
Query: 351 THTKEPPKSCEVCGRAFIRQDCLIRHLR 378
+ E P C C +AF + L+ H +
Sbjct: 4 GSSGEKPFGCSCCEKAFSSKSYLLVHQQ 31
Score = 32.1 bits (74), Expect = 0.036
Identities = 9/30 (30%), Positives = 12/30 (40%), Gaps = 4/30 (13%)
Query: 78 CGRVFNRKDNLREHLRAHAGETKRKKKFKC 107
C + F+ K L H + HA E K
Sbjct: 16 CEKAFSSKSYLLVHQQTHAEE----KPSGP 41
>2odd_A Protein CBFA2T1; MYND zinc finger, cross-braced topology,
poly-proline, proline-tryptophan interaction, metal
binding protein; NMR {Homo sapiens}
Length = 64
Score = 55.0 bits (132), Expect = 5e-10
Identities = 11/34 (32%), Positives = 13/34 (38%)
Query: 423 GEENLLRCSKCKVTFYCSKQHQTLDWKAHKINCN 456
G + CS C YC Q DW+ H C
Sbjct: 24 GRKASETCSGCNTARYCGSFCQHKDWEKHHHICG 57
>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 41
Score = 53.3 bits (129), Expect = 1e-09
Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 152 RKHTGERPYECKEVCGRVFNRKDNLREHLRAHAGE 186
+G+R YEC+E CG+ F +K +L H R H G
Sbjct: 3 SGSSGQRVYECQE-CGKSFRQKGSLTLHERIHTGS 36
Score = 42.9 bits (102), Expect = 6e-06
Identities = 14/35 (40%), Positives = 18/35 (51%)
Query: 296 HEGADPYQCDICRKTFIRKEDLTRHCLLHTGVKPH 330
G Y+C C K+F +K LT H +HTG P
Sbjct: 5 SSGQRVYECQECGKSFRQKGSLTLHERIHTGSGPS 39
Score = 41.0 bits (97), Expect = 2e-05
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 324 HTGVKPHKCPICTKGFTMKSSLKIHLLTHTKEPP 357
+G + ++C C K F K SL +H HT P
Sbjct: 5 SSGQRVYECQECGKSFRQKGSLTLHERIHTGSGP 38
Score = 41.0 bits (97), Expect = 3e-05
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 129 EKLYECDICKNRFPSSGAMKKHRRKHTGERPY 160
+++YEC C F G++ H R HTG P
Sbjct: 8 QRVYECQECGKSFRQKGSLTLHERIHTGSGPS 39
Score = 40.6 bits (96), Expect = 3e-05
Identities = 12/34 (35%), Positives = 16/34 (47%)
Query: 237 KTHSGVKPHVCEYCEKAFIQASQLKAHMFHHTGE 270
SG + + C+ C K+F Q L H HTG
Sbjct: 3 SGSSGQRVYECQECGKSFRQKGSLTLHERIHTGS 36
Score = 36.4 bits (85), Expect = 0.001
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 267 HTGENGHTCELCNKTFNRKARLELHMKYIHEGADPY 302
+G+ + C+ C K+F +K L LH + IH G+ P
Sbjct: 5 SSGQRVYECQECGKSFRQKGSLTLHER-IHTGSGPS 39
Score = 31.4 bits (72), Expect = 0.076
Identities = 7/28 (25%), Positives = 14/28 (50%)
Query: 351 THTKEPPKSCEVCGRAFIRQDCLIRHLR 378
+ + C+ CG++F ++ L H R
Sbjct: 4 GSSGQRVYECQECGKSFRQKGSLTLHER 31
Score = 30.2 bits (69), Expect = 0.17
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 78 CGRVFNRKDNLREHLRAHAGE 98
CG+ F +K +L H R H G
Sbjct: 16 CGKSFRQKGSLTLHERIHTGS 36
Score = 29.5 bits (67), Expect = 0.29
Identities = 10/41 (24%), Positives = 18/41 (43%), Gaps = 5/41 (12%)
Query: 93 RAHAGETKRKKKFKCDKCEKQFYGLTLLRIHERLH-AEKLY 132
+G+ + ++C +C K F L +HER+H
Sbjct: 3 SGSSGQ----RVYECQECGKSFRQKGSLTLHERIHTGSGPS 39
>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} PDB: 2yta_A
Length = 42
Score = 53.1 bits (128), Expect = 2e-09
Identities = 11/37 (29%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Query: 150 HRRKHTGERPYECKEVCGRVFNRKDNLREHLRAHAGE 186
GE PY C + CG+ F ++ +L H R+ +
Sbjct: 2 SSGSSGGETPYLCGQ-CGKSFTQRGSLAVHQRSCSQS 37
Score = 48.0 bits (115), Expect = 8e-08
Identities = 12/36 (33%), Positives = 18/36 (50%)
Query: 324 HTGVKPHKCPICTKGFTMKSSLKIHLLTHTKEPPKS 359
G P+ C C K FT + SL +H + ++ P S
Sbjct: 6 SGGETPYLCGQCGKSFTQRGSLAVHQRSCSQSGPSS 41
Score = 45.7 bits (109), Expect = 5e-07
Identities = 9/36 (25%), Positives = 14/36 (38%)
Query: 235 HMKTHSGVKPHVCEYCEKAFIQASQLKAHMFHHTGE 270
+ G P++C C K+F Q L H +
Sbjct: 2 SSGSSGGETPYLCGQCGKSFTQRGSLAVHQRSCSQS 37
Score = 40.7 bits (96), Expect = 4e-05
Identities = 10/36 (27%), Positives = 14/36 (38%)
Query: 296 HEGADPYQCDICRKTFIRKEDLTRHCLLHTGVKPHK 331
G PY C C K+F ++ L H + P
Sbjct: 6 SGGETPYLCGQCGKSFTQRGSLAVHQRSCSQSGPSS 41
Score = 40.3 bits (95), Expect = 4e-05
Identities = 9/39 (23%), Positives = 13/39 (33%), Gaps = 1/39 (2%)
Query: 123 HERLHA-EKLYECDICKNRFPSSGAMKKHRRKHTGERPY 160
E Y C C F G++ H+R + P
Sbjct: 2 SSGSSGGETPYLCGQCGKSFTQRGSLAVHQRSCSQSGPS 40
Score = 35.3 bits (82), Expect = 0.003
Identities = 9/36 (25%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
Query: 267 HTGENGHTCELCNKTFNRKARLELHMKYIHEGADPY 302
GE + C C K+F ++ L +H + + P
Sbjct: 6 SGGETPYLCGQCGKSFTQRGSLAVHQR-SCSQSGPS 40
Score = 31.5 bits (72), Expect = 0.058
Identities = 9/41 (21%), Positives = 15/41 (36%), Gaps = 5/41 (12%)
Query: 91 HLRAHAGETKRKKKFKCDKCEKQFYGLTLLRIHERLHA-EK 130
+ GE + C +C K F L +H+R +
Sbjct: 2 SSGSSGGE----TPYLCGQCGKSFTQRGSLAVHQRSCSQSG 38
Score = 31.5 bits (72), Expect = 0.068
Identities = 9/37 (24%), Positives = 14/37 (37%), Gaps = 4/37 (10%)
Query: 179 HLRAHAGETKRKKKFKCDKCEKQFYGLTLLRIHERLH 215
+ GE + C +C K F L +H+R
Sbjct: 2 SSGSSGGE----TPYLCGQCGKSFTQRGSLAVHQRSC 34
Score = 30.3 bits (69), Expect = 0.17
Identities = 6/21 (28%), Positives = 12/21 (57%)
Query: 78 CGRVFNRKDNLREHLRAHAGE 98
CG+ F ++ +L H R+ +
Sbjct: 17 CGKSFTQRGSLAVHQRSCSQS 37
Score = 30.3 bits (69), Expect = 0.19
Identities = 9/28 (32%), Positives = 14/28 (50%)
Query: 351 THTKEPPKSCEVCGRAFIRQDCLIRHLR 378
+ E P C CG++F ++ L H R
Sbjct: 5 SSGGETPYLCGQCGKSFTQRGSLAVHQR 32
>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid
binding, KIAA1227 protein, structural genomics; NMR
{Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Length = 107
Score = 54.9 bits (131), Expect = 2e-09
Identities = 21/87 (24%), Positives = 32/87 (36%), Gaps = 3/87 (3%)
Query: 93 RAHAGETKRKKKFKCDKCEKQFYGLTLLRIHERLHAEKLYECDICKNRFPSSGAMKKHRR 152
+ A + K+ ++C C + L HERL C C RF S +K+
Sbjct: 5 SSGASPVENKEVYQCRLCNAKLSSLLEQGSHERLC-RNAAVCPYCSLRF-FSPELKQEHE 62
Query: 153 KHTGERPYECKEVCGRVFNRKDNLREH 179
+ C E C R F ++ H
Sbjct: 63 SKCEYKKLTCLE-CMRTFKSSFSIWRH 88
Score = 49.1 bits (116), Expect = 2e-07
Identities = 22/116 (18%), Positives = 33/116 (28%), Gaps = 27/116 (23%)
Query: 181 RAHAGETKRKKKFKCDKCEKQFYGLTLLRIHERLHGLIERTCYARFAAKETLNRHMKTHS 240
+ A + K+ ++C C + L HERL
Sbjct: 5 SSGASPVENKEVYQCRLCNAKLSSLLEQGSHERLC-------------------RNAA-- 43
Query: 241 GVKPHVCEYCEKAFIQASQLKAHMFHHTGENGHTCELCNKTFNRKARLELHMKYIH 296
VC YC F + H + TC C +TF + H +H
Sbjct: 44 -----VCPYCSLRFFSPELKQEHESKCEYKK-LTCLECMRTFKSSFSIWRHQVEVH 93
Score = 47.2 bits (111), Expect = 1e-06
Identities = 17/92 (18%), Positives = 24/92 (26%), Gaps = 4/92 (4%)
Query: 257 ASQLKAHMFHHTGENGHTCELCNKTFNRKARLELHMKYIHEGADPYQCDICRKTFIRKED 316
S + + + C LCN + H + C C F E
Sbjct: 1 GSSGSSGASPVENKEVYQCRLCNAKLSSLLEQGSHERLCRNA---AVCPYCSLRFFSPEL 57
Query: 317 LTRHCLLHTGVKPHKCPICTKGFTMKSSLKIH 348
H K C C + F S+ H
Sbjct: 58 KQEH-ESKCEYKKLTCLECMRTFKSSFSIWRH 88
Score = 46.4 bits (109), Expect = 2e-06
Identities = 19/88 (21%), Positives = 30/88 (34%), Gaps = 3/88 (3%)
Query: 297 EGADPYQCDICRKTFIRKEDLTRHCLLHTGVKPHKCPICTKGFTMKSSLKIHLLTHTKEP 356
E + YQC +C + H L CP C+ F + H + +
Sbjct: 12 ENKEVYQCRLCNAKLSSLLEQGSHERLCRNAAV--CPYCSLRFFSPELKQEHE-SKCEYK 68
Query: 357 PKSCEVCGRAFIRQDCLIRHLRQKHRSH 384
+C C R F + RH + H +
Sbjct: 69 KLTCLECMRTFKSSFSIWRHQVEVHNQN 96
Score = 44.1 bits (103), Expect = 1e-05
Identities = 16/78 (20%), Positives = 28/78 (35%), Gaps = 6/78 (7%)
Query: 76 KVCGRVFNRKDNLREHLRAHAGETKRKKKFKCDKCEKQFYGLTLLRIHERLHAEKLYECD 135
++C + H R + C C +F+ L + HE K C
Sbjct: 20 RLCNAKLSSLLEQGSHERLC------RNAAVCPYCSLRFFSPELKQEHESKCEYKKLTCL 73
Query: 136 ICKNRFPSSGAMKKHRRK 153
C F SS ++ +H+ +
Sbjct: 74 ECMRTFKSSFSIWRHQVE 91
Score = 40.7 bits (94), Expect = 2e-04
Identities = 16/94 (17%), Positives = 29/94 (30%), Gaps = 10/94 (10%)
Query: 148 KKHRRKHTGERPYECKEVCGRVFNRKDNLREHLRAHAGETKRKKKFKCDKCEKQFYGLTL 207
+ Y+C+ +C + H R + C C +F+ L
Sbjct: 5 SSGASPVENKEVYQCR-LCNAKLSSLLEQGSHERLC------RNAAVCPYCSLRFFSPEL 57
Query: 208 LRIHERLHGLIERTCYA---RFAAKETLNRHMKT 238
+ HE + TC F + ++ RH
Sbjct: 58 KQEHESKCEYKKLTCLECMRTFKSSFSIWRHQVE 91
Score = 31.4 bits (70), Expect = 0.28
Identities = 17/86 (19%), Positives = 30/86 (34%), Gaps = 10/86 (11%)
Query: 45 CKGCYRIFTSQGYMLLSYKSKEEEKQICTYIKVCGRVFNRKDNLREHLRAHAGETKRKKK 104
C+ C +S S++ +C Y C F + +EH KK
Sbjct: 19 CRLCNAKLSSL-LEQGSHERLCRNAAVCPY---CSLRFFSPELKQEHESKCEY-----KK 69
Query: 105 FKCDKCEKQFYGLTLLRIHE-RLHAE 129
C +C + F + H+ +H +
Sbjct: 70 LTCLECMRTFKSSFSIWRHQVEVHNQ 95
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 59.3 bits (143), Expect = 5e-09
Identities = 88/572 (15%), Positives = 150/572 (26%), Gaps = 218/572 (38%)
Query: 199 EKQFYGLTLLR---IH--------------ERLHGLIERTCYARFAAKETLNRHMKTHSG 241
E + L IH + LI+ Y A+ R
Sbjct: 92 ENCY-----LEGNDIHALAAKLLQENDTTLVKTKELIK--NY--ITARIMAKRPFD---- 138
Query: 242 VKPHVCEYCEKAFIQASQL-KAHMFHHTGENGHTCELCNKTFNRKARLELHMKYIHEGAD 300
K A +A A + G G+T + F EL Y
Sbjct: 139 -KKS-----NSALFRAVGEGNAQLVAIFGGQGNT----DDYFE-----ELRDLY-----Q 178
Query: 301 PYQCDICRKTFIRKEDLTRHCLLHTGVKPHKC-PICTKGFTMKSSLKIHLLTHTKEPPK- 358
Y + I + L + T+G + L + P
Sbjct: 179 TYHVLV--GDLI---KFSAETLSELIRTTLDAEKVFTQGLNILE-----WLENPSNTPDK 228
Query: 359 ----SCEV-CGRAFIRQ------DCLIRHLR-QKHRSHLDEVLAQGDKKKLEAQLLAAAA 406
S + C + Q + + RS+L L+ A A
Sbjct: 229 DYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHS------QGLVTAVA 282
Query: 407 TELTSVLEDGEEEGDEGEENLLRCSKCKVTFYC-SKQHQTLDWKAHKINCNILSNQSATN 465
T + ++ + V F+ + ++ S +
Sbjct: 283 IAETD-------SWESFFVSVRKA--ITVLFFIGVRCYEAY---------PNTSLPPSIL 324
Query: 466 NTSLANN----TPQVA-------QIQNQFPLSNQYFHEGSSENEIANSTVQYLNPSLFQN 514
SL NN +P ++ Q+Q+ +N + G + SL
Sbjct: 325 EDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQ-----------VEISLV-- 371
Query: 515 NTPNQLVDTAGTSRA-----------PGPSNMNTQYGLYSDIPILNENNGQNNLTNMHLD 563
N LV +G ++ PS ++ Q S IP + L
Sbjct: 372 NGAKNLV-VSGPPQSLYGLNLTLRKAKAPSGLD-Q----SRIP----------FSERKLK 415
Query: 564 TNVVVVP---PFHHTNNDRVHSDIMIEKMCHNVIRDMDQYGLCVLDDFLGPERDMHLDTN 620
+ +P PF HS ++ + +D+ + ++ +D+
Sbjct: 416 FSNRFLPVASPF--------HSHLL-VPASDLINKDLVK------NNVSFNAKDIQ---- 456
Query: 621 VVVVPPFH-HTNND-RVHSDMIENVIRDMDQYGLC----------------VVDNFLGPE 662
+P + +D RV S I I D + ++D GP
Sbjct: 457 ---IPVYDTFDGSDLRVLSGSISERIVDC----IIRLPVKWETTTQFKATHILD--FGP- 506
Query: 663 RGMAVLHEVLGMYHSGVFKDGQLVSNKSTNKQ 694
G A SG+ G L NK
Sbjct: 507 -GGA----------SGL---GVLTHR---NKD 521
Score = 54.3 bits (130), Expect = 1e-07
Identities = 83/579 (14%), Positives = 154/579 (26%), Gaps = 194/579 (33%)
Query: 254 FIQASQLKAHMFHHTGENGHTCELC--NKTFNRKARLELHMKYIH------EGADPYQCD 305
F ASQL+ F+ T ++ EL K++ E + Q D
Sbjct: 27 FFIASQLQEQ-FNKI-LPEPTEGFAADDEP---TTPAELVGKFLGYVSSLVEPSKVGQFD 81
Query: 306 ICRK--------TFIRKEDLTRHCLLHTGVKPHKCPICTKGFTMKSSLKIHLLTH--TKE 355
++ D+ H L ++ + + +K+ + ++ +
Sbjct: 82 QVLNLCLTEFENCYLEGNDI--HALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDK 139
Query: 356 PPKSCEVCGRAFIR---------------Q----DCL--IRHLRQKHRSHLDEVLAQGDK 394
S A R Q D +R L Q + + +++
Sbjct: 140 KSNS------ALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSA- 192
Query: 395 KKLEAQLLAAAATELTSVLEDG-------EEEGDEGEENLLRCSKCKVTF---------- 437
+ L L + V G E + +++ L S ++
Sbjct: 193 ETLSE--LIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYL-LS-IPISCPLIGVIQLAH 248
Query: 438 YCSKQHQTLDWKAHKINCNILSNQSATNNTSLANNTPQVAQIQNQFPLSNQYFHEGSSEN 497
Y + +L + L T + ++ E S
Sbjct: 249 YV-------------VTAKLLGFTPGELRSYLKGATGHSQGL-----VTAVAIAETDSWE 290
Query: 498 EIANSTVQYLNPSLF------QNNTPNQLVDTAGT--SRAPG---PSNM-----NTQYGL 541
S + + LF PN + + S PS M TQ +
Sbjct: 291 SFFVSVRKAIT-VLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQV 349
Query: 542 YSDIPILNENNGQNN-----LTNMHLDTNVVVV-PPFHHTNNDRVHSDIMIEKMCHNVIR 595
+ N + L N N+VV PP ++ + K
Sbjct: 350 QDYVNKTNSHLPAGKQVEISLVNGA--KNLVVSGPP-----QSLYGLNLTLRKAK--APS 400
Query: 596 DMDQYGLCVLDDFLGPERDMHLDTNVVVVP---PFHHTNNDRVHS----DMIENVIRDMD 648
+DQ + P + L + +P PF HS + + +D+
Sbjct: 401 GLDQSRI--------PFSERKLKFSNRFLPVASPF--------HSHLLVPASDLINKDLV 444
Query: 649 QYGLCVVDNFLGPERGMAVLHEVLGMYHSGVFKDGQLVSNKSTNKQDLKTIRG------- 701
+ + +F + + V Y + DG DL+ + G
Sbjct: 445 KNNV----SFNAKDIQIPV-------YDT---FDG----------SDLRVLSGSISERIV 480
Query: 702 DQIT-----W---IDGRETYC--------SNIGRLISEV 724
D I W + T+ S +G L
Sbjct: 481 DCIIRLPVKWETTTQFKATHILDFGPGGASGLGVLTHRN 519
Score = 42.0 bits (98), Expect = 0.001
Identities = 56/332 (16%), Positives = 92/332 (27%), Gaps = 133/332 (40%)
Query: 292 MKYIHEGADPYQ-CDICRKTFIRKEDLTRHCLLHTGVKPHKCPICTKGFTMKSSLKIHLL 350
M G D Y+ + + R ++ + GF S L I
Sbjct: 1631 M-----GMDLYKTSKAAQDVWNRADNHFKDTY---------------GF---SILDI--- 1664
Query: 351 THTKEPPKSCEVC-----GRAFIRQ--DCLIRHLRQKHRSHLDEVLA-----------QG 392
P + + G+ IR+ +I + +++ +
Sbjct: 1665 --VINNPVNLTIHFGGEKGKR-IRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRS 1721
Query: 393 DKKKLE----AQ--LLAAAATELTSVLEDGEEEGDE-----------GE----------- 424
+K L Q L + ED + +G GE
Sbjct: 1722 EKGLLSATQFTQPALTLMEK----AAFEDLKSKGLIPADATFAGHSLGEYAALASLADVM 1777
Query: 425 --ENLLRCSKCKVTFYCSKQHQTLDWKAHKINCNILSNQSATNNTSLANNTP-QVAQIQN 481
E+L+ +V FY Q + ++ +N + P +VA +
Sbjct: 1778 SIESLV-----EVVFYRGMTMQVA----------VPRDELGRSNYGMIAINPGRVAASFS 1822
Query: 482 QFPLSNQYFHEGSSEN-----EIANSTVQYLNPSLFQNNTPNQLVDTAGTSRAPGPSNMN 536
Q L QY E + EI N Y N NQ AG RA
Sbjct: 1823 QEAL--QYVVERVGKRTGWLVEIVN----Y--------NVENQQYVAAGDLRA------- 1861
Query: 537 TQYGLYSDIPILNENNGQN----NLT-NMHLD 563
L + +LN Q L ++ L+
Sbjct: 1862 ----LDTVTNVLNFIKLQKIDIIELQKSLSLE 1889
Score = 36.6 bits (84), Expect = 0.043
Identities = 31/157 (19%), Positives = 50/157 (31%), Gaps = 48/157 (30%)
Query: 106 KCDKCEKQFYGLTLLRIHERLHAEKLYECDICKNRFPSSGAMKKHRRKH-TGERPYECKE 164
+ D K YG ++L DI N P + + H GE+
Sbjct: 1648 RADNHFKDTYGFSIL--------------DIVIN-NPVNLTI------HFGGEK------ 1680
Query: 165 VCGRVFNRKDNLREHLRAHAGETKRKKKFKCDKCEKQFYGLTLLRIHERLHGLIERTCY- 223
G+ +RE+ A ET K K +K K+ + GL+ T +
Sbjct: 1681 --GK------RIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFT 1732
Query: 224 --ARFAAKETLNRHMKTHSGVKPHVC--------EYC 250
A ++ +K+ G+ P EY
Sbjct: 1733 QPALTLMEKAAFEDLKSK-GLIPADATFAGHSLGEYA 1768
Score = 35.0 bits (80), Expect = 0.13
Identities = 32/234 (13%), Positives = 61/234 (26%), Gaps = 85/234 (36%)
Query: 608 FLG-------PERDMHLDTNV-VVVPPFHHT---NNDRVHSDMIENVIRDMDQYGLCVVD 656
FLG P + D + + + F + ND +H+ +
Sbjct: 64 FLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGND-IHA----------------LAA 106
Query: 657 NFLGPERG-MAVLHEVLGMYHSGVFKDGQ---------LVSNKSTNKQDLKTIRGDQ--- 703
L + E++ Y + + L L I G Q
Sbjct: 107 KLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNT 166
Query: 704 ITWIDG-RE---TYCSNIGRLISEVDAIIMRANRMVNNGRMGDFVINGRTKQNGGLLRIF 759
+ + R+ TY +G LI + R + ++F
Sbjct: 167 DDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAE-----------------KVF 209
Query: 760 PEGGGDKVADIEPMFDRILFFW---SDRRNPHEAMVAC---YPGHG----SHYV 803
+G + + W + +++ P G +HYV
Sbjct: 210 TQG-----------LN--ILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYV 250
>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 51.6 bits (124), Expect = 6e-09
Identities = 11/34 (32%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 154 HTGERPYECKEVCGRVFNRKDNLREHLRAHAGET 187
+GE+PY C E C F+ + L +H + H ++
Sbjct: 5 SSGEKPYSCAE-CKETFSDNNRLVQHQKMHTVKS 37
Score = 48.1 bits (115), Expect = 7e-08
Identities = 12/39 (30%), Positives = 20/39 (51%)
Query: 237 KTHSGVKPHVCEYCEKAFIQASQLKAHMFHHTGENGHTC 275
SG KP+ C C++ F ++L H HT ++G +
Sbjct: 3 SGSSGEKPYSCAECKETFSDNNRLVQHQKMHTVKSGPSS 41
Score = 44.2 bits (105), Expect = 2e-06
Identities = 11/37 (29%), Positives = 17/37 (45%)
Query: 324 HTGVKPHKCPICTKGFTMKSSLKIHLLTHTKEPPKSC 360
+G KP+ C C + F+ + L H HT + S
Sbjct: 5 SSGEKPYSCAECKETFSDNNRLVQHQKMHTVKSGPSS 41
Score = 41.2 bits (97), Expect = 3e-05
Identities = 11/37 (29%), Positives = 15/37 (40%)
Query: 296 HEGADPYQCDICRKTFIRKEDLTRHCLLHTGVKPHKC 332
G PY C C++TF L +H +HT
Sbjct: 5 SSGEKPYSCAECKETFSDNNRLVQHQKMHTVKSGPSS 41
Score = 36.9 bits (86), Expect = 7e-04
Identities = 10/34 (29%), Positives = 16/34 (47%)
Query: 129 EKLYECDICKNRFPSSGAMKKHRRKHTGERPYEC 162
EK Y C CK F + + +H++ HT +
Sbjct: 8 EKPYSCAECKETFSDNNRLVQHQKMHTVKSGPSS 41
Score = 36.1 bits (84), Expect = 0.001
Identities = 11/38 (28%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Query: 267 HTGENGHTCELCNKTFNRKARLELHMKYIHEGADPYQC 304
+GE ++C C +TF+ RL H K +H
Sbjct: 5 SSGEKPYSCAECKETFSDNNRLVQHQK-MHTVKSGPSS 41
Score = 35.4 bits (82), Expect = 0.002
Identities = 8/28 (28%), Positives = 13/28 (46%)
Query: 351 THTKEPPKSCEVCGRAFIRQDCLIRHLR 378
+ E P SC C F + L++H +
Sbjct: 4 GSSGEKPYSCAECKETFSDNNRLVQHQK 31
Score = 29.2 bits (66), Expect = 0.39
Identities = 5/22 (22%), Positives = 11/22 (50%)
Query: 78 CGRVFNRKDNLREHLRAHAGET 99
C F+ + L +H + H ++
Sbjct: 16 CKETFSDNNRLVQHQKMHTVKS 37
Score = 29.2 bits (66), Expect = 0.45
Identities = 9/41 (21%), Positives = 18/41 (43%), Gaps = 5/41 (12%)
Query: 95 HAGETKRKKKFKCDKCEKQFYGLTLLRIHERLH-AEKLYEC 134
+GE K + C +C++ F L H+++H +
Sbjct: 5 SSGE----KPYSCAECKETFSDNNRLVQHQKMHTVKSGPSS 41
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger,
transcription factor, DNA binding protein; NMR {Mus
musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Length = 37
Score = 49.6 bits (119), Expect = 2e-08
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 150 HRRKHTGERPYECKEVCGRVFNRKDNLREHLRAH 183
R TG +P++C C R F+R D+L H + H
Sbjct: 2 STRGSTGIKPFQC-PDCDRSFSRSDHLALHRKRH 34
Score = 41.2 bits (97), Expect = 2e-05
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 324 HTGVKPHKCPICTKGFTMKSSLKIHLLTH 352
TG+KP +CP C + F+ L +H H
Sbjct: 6 STGIKPFQCPDCDRSFSRSDHLALHRKRH 34
Score = 40.4 bits (95), Expect = 4e-05
Identities = 9/33 (27%), Positives = 17/33 (51%)
Query: 235 HMKTHSGVKPHVCEYCEKAFIQASQLKAHMFHH 267
+ +G+KP C C+++F ++ L H H
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRH 34
Score = 35.8 bits (83), Expect = 0.002
Identities = 10/31 (32%), Positives = 12/31 (38%)
Query: 348 HLLTHTKEPPKSCEVCGRAFIRQDCLIRHLR 378
T P C C R+F R D L H +
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRK 32
Score = 35.4 bits (82), Expect = 0.002
Identities = 10/27 (37%), Positives = 14/27 (51%)
Query: 267 HTGENGHTCELCNKTFNRKARLELHMK 293
TG C C+++F+R L LH K
Sbjct: 6 STGIKPFQCPDCDRSFSRSDHLALHRK 32
Score = 34.2 bits (79), Expect = 0.006
Identities = 11/33 (33%), Positives = 15/33 (45%)
Query: 295 IHEGADPYQCDICRKTFIRKEDLTRHCLLHTGV 327
G P+QC C ++F R + L H H V
Sbjct: 5 GSTGIKPFQCPDCDRSFSRSDHLALHRKRHMLV 37
Score = 32.7 bits (75), Expect = 0.023
Identities = 11/40 (27%), Positives = 17/40 (42%), Gaps = 4/40 (10%)
Query: 179 HLRAHAGETKRKKKFKCDKCEKQFYGLTLLRIHERLHGLI 218
R G K F+C C++ F L +H + H L+
Sbjct: 2 STRGSTGI----KPFQCPDCDRSFSRSDHLALHRKRHMLV 37
Score = 32.7 bits (75), Expect = 0.024
Identities = 9/33 (27%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Query: 123 HERLH-AEKLYECDICKNRFPSSGAMKKHRRKH 154
R K ++C C F S + HR++H
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRH 34
Score = 32.3 bits (74), Expect = 0.033
Identities = 10/37 (27%), Positives = 15/37 (40%), Gaps = 4/37 (10%)
Query: 91 HLRAHAGETKRKKKFKCDKCEKQFYGLTLLRIHERLH 127
R G K F+C C++ F L +H + H
Sbjct: 2 STRGSTGI----KPFQCPDCDRSFSRSDHLALHRKRH 34
Score = 28.1 bits (63), Expect = 0.95
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 76 KVCGRVFNRKDNLREHLRAH 95
C R F+R D+L H + H
Sbjct: 15 PDCDRSFSRSDHLALHRKRH 34
>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 44
Score = 48.3 bits (115), Expect = 7e-08
Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 149 KHRRKHTGERPYECKEVCGRVFNRKDNLREHLRAHAGE 186
GE P++C + C RVF +++ L +H R HA +
Sbjct: 2 SSGSSGAGENPFKCSK-CDRVFTQRNYLVQHERTHARK 38
Score = 44.9 bits (106), Expect = 1e-06
Identities = 10/41 (24%), Positives = 18/41 (43%)
Query: 234 RHMKTHSGVKPHVCEYCEKAFIQASQLKAHMFHHTGENGHT 274
+ +G P C C++ F Q + L H H ++G +
Sbjct: 2 SSGSSGAGENPFKCSKCDRVFTQRNYLVQHERTHARKSGPS 42
Score = 41.0 bits (96), Expect = 3e-05
Identities = 12/41 (29%), Positives = 17/41 (41%)
Query: 319 RHCLLHTGVKPHKCPICTKGFTMKSSLKIHLLTHTKEPPKS 359
G P KC C + FT ++ L H TH ++ S
Sbjct: 2 SSGSSGAGENPFKCSKCDRVFTQRNYLVQHERTHARKSGPS 42
Score = 37.9 bits (88), Expect = 4e-04
Identities = 8/35 (22%), Positives = 15/35 (42%)
Query: 296 HEGADPYQCDICRKTFIRKEDLTRHCLLHTGVKPH 330
G +P++C C + F ++ L +H H
Sbjct: 7 GAGENPFKCSKCDRVFTQRNYLVQHERTHARKSGP 41
Score = 35.6 bits (82), Expect = 0.002
Identities = 16/40 (40%), Positives = 19/40 (47%), Gaps = 4/40 (10%)
Query: 91 HLRAHAGETKRKKKFKCDKCEKQFYGLTLLRIHERLHAEK 130
+ AGE FKC KC++ F L HER HA K
Sbjct: 3 SGSSGAGE----NPFKCSKCDRVFTQRNYLVQHERTHARK 38
Score = 35.2 bits (81), Expect = 0.003
Identities = 10/40 (25%), Positives = 18/40 (45%), Gaps = 4/40 (10%)
Query: 348 HLLTHTKEPPKSCEVCGRAFIRQDCLIRHLRQKHRSHLDE 387
+ E P C C R F +++ L++H R+H +
Sbjct: 3 SGSSGAGENPFKCSKCDRVFTQRNYLVQH----ERTHARK 38
Score = 35.2 bits (81), Expect = 0.003
Identities = 14/37 (37%), Positives = 17/37 (45%), Gaps = 4/37 (10%)
Query: 179 HLRAHAGETKRKKKFKCDKCEKQFYGLTLLRIHERLH 215
+ AGE FKC KC++ F L HER H
Sbjct: 3 SGSSGAGE----NPFKCSKCDRVFTQRNYLVQHERTH 35
Score = 32.1 bits (73), Expect = 0.042
Identities = 7/33 (21%), Positives = 12/33 (36%)
Query: 127 HAEKLYECDICKNRFPSSGAMKKHRRKHTGERP 159
E ++C C F + +H R H +
Sbjct: 8 AGENPFKCSKCDRVFTQRNYLVQHERTHARKSG 40
Score = 31.0 bits (70), Expect = 0.12
Identities = 9/21 (42%), Positives = 14/21 (66%)
Query: 78 CGRVFNRKDNLREHLRAHAGE 98
C RVF +++ L +H R HA +
Sbjct: 18 CDRVFTQRNYLVQHERTHARK 38
Score = 30.2 bits (68), Expect = 0.23
Identities = 9/37 (24%), Positives = 15/37 (40%), Gaps = 1/37 (2%)
Query: 262 AHMFHHTGENGHTCELCNKTFNRKARLELHMKYIHEG 298
+ GEN C C++ F ++ L H + H
Sbjct: 2 SSGSSGAGENPFKCSKCDRVFTQRNYLVQHER-THAR 37
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 48
Score = 48.0 bits (114), Expect = 1e-07
Identities = 12/39 (30%), Positives = 18/39 (46%)
Query: 129 EKLYECDICKNRFPSSGAMKKHRRKHTGERPYECKEVCG 167
K C+IC F + +H+ H+GE+PY G
Sbjct: 10 RKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPSSG 48
Score = 46.9 bits (111), Expect = 3e-07
Identities = 11/43 (25%), Positives = 16/43 (37%)
Query: 237 KTHSGVKPHVCEYCEKAFIQASQLKAHMFHHTGENGHTCELCN 279
+ K CE C K F L H H+GE ++ +
Sbjct: 5 SSGRTRKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPSS 47
Score = 45.7 bits (108), Expect = 8e-07
Identities = 13/36 (36%), Positives = 17/36 (47%)
Query: 301 PYQCDICRKTFIRKEDLTRHCLLHTGVKPHKCPICT 336
C+IC K F L RH L H+G KP+ +
Sbjct: 12 QVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPSS 47
Score = 45.3 bits (107), Expect = 9e-07
Identities = 13/36 (36%), Positives = 15/36 (41%)
Query: 328 KPHKCPICTKGFTMKSSLKIHLLTHTKEPPKSCEVC 363
K C IC K F L H L+H+ E P S
Sbjct: 11 KQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPS 46
Score = 38.8 bits (90), Expect = 2e-04
Identities = 11/47 (23%), Positives = 19/47 (40%), Gaps = 5/47 (10%)
Query: 152 RKHTGERPYECKEVCGRVFNRKDNLREHLRAHAGETKRKKKFKCDKC 198
+ C E+CG++F +L H +H+GE K +
Sbjct: 5 SSGRTRKQVAC-EICGKIFRDVYHLNRHKLSHSGE----KPYSSGPS 46
Score = 35.3 bits (81), Expect = 0.004
Identities = 12/41 (29%), Positives = 13/41 (31%), Gaps = 1/41 (2%)
Query: 267 HTGENGHTCELCNKTFNRKARLELHMKYIHEGADPYQCDIC 307
CE+C K F L H K H G PY
Sbjct: 7 GRTRKQVACEICGKIFRDVYHLNRH-KLSHSGEKPYSSGPS 46
Score = 34.1 bits (78), Expect = 0.009
Identities = 11/29 (37%), Positives = 13/29 (44%)
Query: 222 CYARFAAKETLNRHMKTHSGVKPHVCEYC 250
C F LNRH +HSG KP+
Sbjct: 18 CGKIFRDVYHLNRHKLSHSGEKPYSSGPS 46
Score = 32.2 bits (73), Expect = 0.045
Identities = 10/48 (20%), Positives = 19/48 (39%), Gaps = 7/48 (14%)
Query: 63 KSKEEEKQICTYIKVCGRVFNRKDNLREHLRAHAGETKRKKKFKCDKC 110
+ ++ C CG++F +L H +H+GE K +
Sbjct: 6 SGRTRKQVACEI---CGKIFRDVYHLNRHKLSHSGE----KPYSSGPS 46
Score = 28.0 bits (62), Expect = 1.6
Identities = 11/37 (29%), Positives = 15/37 (40%), Gaps = 4/37 (10%)
Query: 351 THTKEPPKSCEVCGRAFIRQDCLIRHLRQKHRSHLDE 387
+ +CE+CG+ F L RH SH E
Sbjct: 6 SGRTRKQVACEICGKIFRDVYHLNRH----KLSHSGE 38
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 53.7 bits (128), Expect = 3e-07
Identities = 84/679 (12%), Positives = 189/679 (27%), Gaps = 213/679 (31%)
Query: 157 ERPYECKEVCGRVFNRKDNLREHLRAHAG-ETKRK---KKFKCDKCEKQFYGLTLLRIHE 212
+ KE + KD + LR +K++ +KF ++ + Y + I
Sbjct: 42 PKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKF-VEEVLRINYKFLMSPIKT 100
Query: 213 RLHG-LIERTCYARFAAKETLNR-HMKTHSGVKPHVCEYCEKAFIQ----ASQLKAHMF- 265
+ Y E +R + K +V + +++ +L+
Sbjct: 101 EQRQPSMMTRMYI-----EQRDRLYNDNQVFAKYNVSR--LQPYLKLRQALLELRPAKNV 153
Query: 266 --HHTGENGHTC---ELCNKTFNRKARLELHMKYIHEGADPYQCDICRKTFIRKEDLTRH 320
+G T ++C ++ + +++ + +++ C+ + L
Sbjct: 154 LIDGVLGSGKTWVALDVCL-SYKVQCKMDFKIFWLNLK----NCNSPETVLEMLQKLLYQ 208
Query: 321 CLLHTGVKPHKCPICTKGFTMK---SSLKIHLLTHTKEPPKSCEVCGRAFIRQDCLIRHL 377
+ P+ +K S++ L K P ++CL+
Sbjct: 209 ------IDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKP-----------YENCLLV-- 249
Query: 378 RQKHRSHLDEVLAQGDKKKLEA------------------QLLAAAATELTSVLEDGEEE 419
L V + K A L AA T ++
Sbjct: 250 -------LLNV---QNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLT 299
Query: 420 GDEGEENLLRCSKCKVTFYCSKQHQTLDWKAHKINCNILSNQSATNNTSLANNTPQV--- 476
DE + LL+ C+ Q L + N P+
Sbjct: 300 PDEVKSLLLKYLDCRP--------QDLPREVLTTN-------------------PRRLSI 332
Query: 477 --AQIQNQFPLSNQYFHEGSSE-NEIANSTVQYLNPSLFQNNTPNQLVDTAGTSRAPGPS 533
I++ + + H + I S++ L P+ ++
Sbjct: 333 IAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRK------------------- 373
Query: 534 NMNTQYGLYSDIPILNENNGQNNLTNMHLDTNVVVVPPFHHT-----NNDRVHSDIMIEK 588
++ + + + +P + +++
Sbjct: 374 -------MFDRLSVFPPS---------------AHIPT--ILLSLIWFDVIKSDVMVVVN 409
Query: 589 MCHN---VIRDMDQYGLCVLDDFLGPERDMHLDTNVVVVPPFHHTNNDRVHSDMIE--NV 643
H V + + + ++L+ V N +H +++ N+
Sbjct: 410 KLHKYSLVEKQPKES-TISIP-------SIYLELKV------KLENEYALHRSIVDHYNI 455
Query: 644 IRDMDQYGLCV--VDNFLGPERGMAVLHEVLGMYHSGVFKDGQLVSNKSTNKQDL----K 697
+ D L +D + + +G +H + + ++ D +
Sbjct: 456 PKTFDSDDLIPPYLDQY---------FYSHIG-HHLKNIEHPERMTLFRMVFLDFRFLEQ 505
Query: 698 TIRGDQITWIDGRETYCSNIGRL------ISEVDAIIMRANRMVNNGRMGDFVINGRTK- 750
IR D W + + + + +L I + D + R+VN + DF+
Sbjct: 506 KIRHDSTAW-NASGSILNTLQQLKFYKPYICDNDP---KYERLVNA--ILDFLPKIEENL 559
Query: 751 ---QNGGLLRI--FPEGGG 764
+ LLRI E
Sbjct: 560 ICSKYTDLLRIALMAEDEA 578
Score = 37.5 bits (86), Expect = 0.019
Identities = 51/389 (13%), Positives = 102/389 (26%), Gaps = 109/389 (28%)
Query: 467 TSLANNTPQVAQIQNQFPLSNQYFHEGSSENEIANSTVQYLNPSLFQNNTPNQLVDTAGT 526
T +A + ++Q + + F + ++ L L PN + +
Sbjct: 164 TWVALDVCLSYKVQCKMD--FKIFWLNLKNCNSPETVLEMLQ-KLLYQIDPNWTSRSDHS 220
Query: 527 SRAPGPSNMNTQYGLYSDIPILNENNGQNNLTNMHLDTNV---VVVPPFHH-------TN 576
S + + Q L +L +N L + L NV F+ T
Sbjct: 221 SNIKLRIH-SIQAELRR---LLKSKPYENCL--LVLL-NVQNAKAWNAFNLSCKILLTTR 273
Query: 577 NDRVHSDIMIEKMCHNVIRDMDQ-----YGLCVLDDFLGPERDMHLDTNVVVVPPFHHTN 631
+V + H + +L +L L V+ P +
Sbjct: 274 FKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQD-LPREVLTTNPRRLS- 331
Query: 632 NDRVHSDMIENVIRDM----DQY------------GLCVVDNFLGPERGMAVLHEVLGMY 675
+I IRD D + + N L P E M+
Sbjct: 332 -------IIAESIRDGLATWDNWKHVNCDKLTTIIESSL--NVLEPA-------EYRKMF 375
Query: 676 HS-GVFKDGQLVSNKSTNKQDLKTIRGDQITWIDGRETYCSNIGRLISEVDAIIMRANRM 734
VF + + + W D +I +++ N++
Sbjct: 376 DRLSVFPPSAHIP--------TILL---SLIWFD-----------VIKSDVMVVV--NKL 411
Query: 735 VNNGRMGDFVINGRTKQNGGLLRIFPEGGGDKVADIEPMFDRILFFWSDRRNPHEAMVAC 794
++ + K+ + I I + + + H ++V
Sbjct: 412 HKYS-----LVEKQPKE--STISIP---------SI---YLELKVKLENEYALHRSIVDH 452
Query: 795 YPGHGSHYVKHVDNPNRDGRCITAIYYLN 823
Y + + P D Y+ +
Sbjct: 453 YNIPKTFDSDDLIPPYLDQ------YFYS 475
>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding
protein; NMR {Homo sapiens}
Length = 37
Score = 40.0 bits (94), Expect = 6e-05
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Query: 240 SGVKPHVCEY--CEKAFIQASQLKAHMFHHTGE 270
K H+C C K + + S L+AH+ HTGE
Sbjct: 4 GKKKQHICHIQGCGKVYGKTSHLRAHLRWHTGE 36
Score = 35.0 bits (81), Expect = 0.003
Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 155 TGERPYECK-EVCGRVFNRKDNLREHLRAHAGE 186
++ + C + CG+V+ + +LR HLR H GE
Sbjct: 4 GKKKQHICHIQGCGKVYGKTSHLRAHLRWHTGE 36
Score = 35.0 bits (81), Expect = 0.003
Identities = 13/30 (43%), Positives = 15/30 (50%), Gaps = 2/30 (6%)
Query: 328 KPHKCPI--CTKGFTMKSSLKIHLLTHTKE 355
K H C I C K + S L+ HL HT E
Sbjct: 7 KQHICHIQGCGKVYGKTSHLRAHLRWHTGE 36
Score = 33.1 bits (76), Expect = 0.017
Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Query: 64 SKEEEKQICTYIKVCGRVFNRKDNLREHLRAHAGE 98
++++ IC + CG+V+ + +LR HLR H GE
Sbjct: 3 PGKKKQHICHI-QGCGKVYGKTSHLRAHLRWHTGE 36
Score = 30.8 bits (70), Expect = 0.12
Identities = 11/32 (34%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Query: 129 EKLYECDI--CKNRFPSSGAMKKHRRKHTGER 158
+K + C I C + + ++ H R HTGER
Sbjct: 6 KKQHICHIQGCGKVYGKTSHLRAHLRWHTGER 37
Score = 28.5 bits (64), Expect = 0.68
Identities = 10/32 (31%), Positives = 15/32 (46%), Gaps = 2/32 (6%)
Query: 98 ETKRKKKFKCD--KCEKQFYGLTLLRIHERLH 127
+ +KK+ C C K + + LR H R H
Sbjct: 2 DPGKKKQHICHIQGCGKVYGKTSHLRAHLRWH 33
Score = 28.5 bits (64), Expect = 0.68
Identities = 10/32 (31%), Positives = 15/32 (46%), Gaps = 2/32 (6%)
Query: 186 ETKRKKKFKCD--KCEKQFYGLTLLRIHERLH 215
+ +KK+ C C K + + LR H R H
Sbjct: 2 DPGKKKQHICHIQGCGKVYGKTSHLRAHLRWH 33
Score = 26.2 bits (58), Expect = 4.3
Identities = 9/30 (30%), Positives = 13/30 (43%), Gaps = 2/30 (6%)
Query: 301 PYQCDI--CRKTFIRKEDLTRHCLLHTGVK 328
+ C I C K + + L H HTG +
Sbjct: 8 QHICHIQGCGKVYGKTSHLRAHLRWHTGER 37
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A
1are_A
Length = 29
Score = 39.6 bits (93), Expect = 6e-05
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 301 PYQCDICRKTFIRKEDLTRHCLLHTGVK 328
+ C++C + F R+E L RH HT K
Sbjct: 2 SFVCEVCTRAFARQEHLKRHYRSHTNEK 29
Score = 39.2 bits (92), Expect = 9e-05
Identities = 10/28 (35%), Positives = 15/28 (53%)
Query: 328 KPHKCPICTKGFTMKSSLKIHLLTHTKE 355
+ C +CT+ F + LK H +HT E
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNE 28
Score = 35.0 bits (81), Expect = 0.002
Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Query: 158 RPYECKEVCGRVFNRKDNLREHLRAHAGE 186
R + C EVC R F R+++L+ H R+H E
Sbjct: 1 RSFVC-EVCTRAFARQEHLKRHYRSHTNE 28
Score = 33.8 bits (78), Expect = 0.008
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 243 KPHVCEYCEKAFIQASQLKAHMFHHTGE 270
+ VCE C +AF + LK H HT E
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNE 28
Score = 31.5 bits (72), Expect = 0.054
Identities = 13/22 (59%), Positives = 14/22 (63%)
Query: 357 PKSCEVCGRAFIRQDCLIRHLR 378
CEVC RAF RQ+ L RH R
Sbjct: 2 SFVCEVCTRAFARQEHLKRHYR 23
Score = 31.1 bits (71), Expect = 0.061
Identities = 9/29 (31%), Positives = 16/29 (55%)
Query: 130 KLYECDICKNRFPSSGAMKKHRRKHTGER 158
+ + C++C F +K+H R HT E+
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNEK 29
Score = 30.0 bits (68), Expect = 0.18
Identities = 10/23 (43%), Positives = 16/23 (69%)
Query: 76 KVCGRVFNRKDNLREHLRAHAGE 98
+VC R F R+++L+ H R+H E
Sbjct: 6 EVCTRAFARQEHLKRHYRSHTNE 28
Score = 26.9 bits (60), Expect = 2.0
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 221 TCYARFAAKETLNRHMKTHSGVK 243
C FA +E L RH ++H+ K
Sbjct: 7 VCTRAFARQEHLKRHYRSHTNEK 29
Score = 26.9 bits (60), Expect = 2.0
Identities = 8/25 (32%), Positives = 12/25 (48%)
Query: 103 KKFKCDKCEKQFYGLTLLRIHERLH 127
+ F C+ C + F L+ H R H
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSH 25
Score = 26.9 bits (60), Expect = 2.0
Identities = 8/25 (32%), Positives = 12/25 (48%)
Query: 191 KKFKCDKCEKQFYGLTLLRIHERLH 215
+ F C+ C + F L+ H R H
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSH 25
>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens}
SCOP: g.37.1.1 PDB: 1va2_A
Length = 31
Score = 39.1 bits (92), Expect = 1e-04
Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Query: 158 RPYECK-EVCGRVFNRKDNLREHLRAHAGE 186
RP+ C CG+ F R D L+ H R H GE
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGE 30
Score = 36.0 bits (84), Expect = 0.001
Identities = 13/30 (43%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
Query: 301 PYQCDI--CRKTFIRKEDLTRHCLLHTGVK 328
P+ C C K F R ++L RH HTG K
Sbjct: 2 PFMCTWSYCGKRFTRSDELQRHKRTHTGEK 31
Score = 33.0 bits (76), Expect = 0.015
Identities = 11/21 (52%), Positives = 13/21 (61%)
Query: 78 CGRVFNRKDNLREHLRAHAGE 98
CG+ F R D L+ H R H GE
Sbjct: 10 CGKRFTRSDELQRHKRTHTGE 30
Score = 31.8 bits (73), Expect = 0.039
Identities = 11/29 (37%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Query: 132 YECDI--CKNRFPSSGAMKKHRRKHTGER 158
+ C C RF S +++H+R HTGE+
Sbjct: 3 FMCTWSYCGKRFTRSDELQRHKRTHTGEK 31
Score = 31.4 bits (72), Expect = 0.047
Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Query: 243 KPHVC--EYCEKAFIQASQLKAHMFHHTGE 270
+P +C YC K F ++ +L+ H HTGE
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGE 30
Score = 29.9 bits (68), Expect = 0.18
Identities = 12/30 (40%), Positives = 14/30 (46%), Gaps = 2/30 (6%)
Query: 328 KPHKC--PICTKGFTMKSSLKIHLLTHTKE 355
+P C C K FT L+ H THT E
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGE 30
Score = 29.5 bits (67), Expect = 0.29
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 222 CYARFAAKETLNRHMKTHSGVK 243
C RF + L RH +TH+G K
Sbjct: 10 CGKRFTRSDELQRHKRTHTGEK 31
Score = 26.0 bits (58), Expect = 4.3
Identities = 10/19 (52%), Positives = 11/19 (57%), Gaps = 1/19 (5%)
Query: 363 CGRAFIRQDCLIRHLRQKH 381
CG+ F R D L RH R H
Sbjct: 10 CGKRFTRSDELQRHKR-TH 27
>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers,
4-stranded parallel/anti-parallel beta- sheet,
structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1
Length = 102
Score = 40.9 bits (95), Expect = 1e-04
Identities = 14/86 (16%), Positives = 29/86 (33%), Gaps = 4/86 (4%)
Query: 228 AKETLNRHMKTHSGVKPHVCEYCEKAFIQASQLKAHMF-HHTG---ENGHTCELCNKTFN 283
A + + + + C+YC + H+ H + + C CN
Sbjct: 2 AHHHHHHNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTK 61
Query: 284 RKARLELHMKYIHEGADPYQCDICRK 309
R L H H G + ++ + ++
Sbjct: 62 RYDALSEHNLKYHPGEENFKLTMVKR 87
Score = 37.1 bits (85), Expect = 0.003
Identities = 16/81 (19%), Positives = 26/81 (32%), Gaps = 6/81 (7%)
Query: 89 REHLRAHAGETKRKKKFKCDKCEKQFYGLTLLRIHER-----LHAEKLYECDICKNRFPS 143
H + K + ++C C Q L + H + Y C C
Sbjct: 3 HHHHHHNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKR 62
Query: 144 SGAMKKHRRK-HTGERPYECK 163
A+ +H K H GE ++
Sbjct: 63 YDALSEHNLKYHPGEENFKLT 83
Score = 36.7 bits (84), Expect = 0.004
Identities = 12/66 (18%), Positives = 19/66 (28%), Gaps = 3/66 (4%)
Query: 258 SQLKAHMFHHTGENGHTCELCNKTFNRKARLELHMKYIHEG---ADPYQCDICRKTFIRK 314
+ + E G+ C+ C H+ H Y C C R
Sbjct: 4 HHHHHNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRY 63
Query: 315 EDLTRH 320
+ L+ H
Sbjct: 64 DALSEH 69
Score = 32.4 bits (73), Expect = 0.13
Identities = 11/70 (15%), Positives = 20/70 (28%), Gaps = 1/70 (1%)
Query: 146 AMKKHRRKHTGERPYECKEVCGRVFNRKDNLREHLRAHAGETKRKKKFKCDKCEKQFYGL 205
+++ E YECK C + H+ + + C +C
Sbjct: 5 HHHHNQQNKKVEGGYECKY-CTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRY 63
Query: 206 TLLRIHERLH 215
L H +
Sbjct: 64 DALSEHNLKY 73
Score = 32.1 bits (72), Expect = 0.19
Identities = 12/67 (17%), Positives = 19/67 (28%), Gaps = 4/67 (5%)
Query: 319 RHCLLHTGVKPHKCPICTKGFTMKSSLKIHLLT-HT---KEPPKSCEVCGRAFIRQDCLI 374
+ ++C CT + H+ + H C C R D L
Sbjct: 8 HNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALS 67
Query: 375 RHLRQKH 381
H + H
Sbjct: 68 EHNLKYH 74
Score = 29.7 bits (66), Expect = 1.2
Identities = 17/105 (16%), Positives = 27/105 (25%), Gaps = 27/105 (25%)
Query: 177 REHLRAHAGETKRKKKFKCDKCEKQFYGLTLLRIHERLHGLIERTCYARFAAKETLNRHM 236
H + K + ++C C Q L + H
Sbjct: 3 HHHHHHNQQNKKVEGGYECKYCTFQTPDLNMFTFHVD----------------------- 39
Query: 237 KTHSGVK---PHVCEYCEKAFIQASQLKAH-MFHHTGENGHTCEL 277
H V +VC C + L H + +H GE +
Sbjct: 40 SEHPNVVLNSSYVCVECNFLTKRYDALSEHNLKYHPGEENFKLTM 84
>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 45
Score = 38.4 bits (88), Expect = 2e-04
Identities = 16/32 (50%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Query: 154 HTGERPYECKEVCGRVFNRKDNLREHLRAHAG 185
+GE+PY C VCG F RKD + H+R+H G
Sbjct: 5 SSGEKPYSCP-VCGLRFKRKDRMSYHVRSHDG 35
Score = 34.5 bits (78), Expect = 0.006
Identities = 11/31 (35%), Positives = 15/31 (48%)
Query: 296 HEGADPYQCDICRKTFIRKEDLTRHCLLHTG 326
G PY C +C F RK+ ++ H H G
Sbjct: 5 SSGEKPYSCPVCGLRFKRKDRMSYHVRSHDG 35
Score = 34.1 bits (77), Expect = 0.009
Identities = 13/32 (40%), Positives = 17/32 (53%)
Query: 352 HTKEPPKSCEVCGRAFIRQDCLIRHLRQKHRS 383
+ E P SC VCG F R+D + H+R S
Sbjct: 5 SSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGS 36
Score = 30.7 bits (68), Expect = 0.14
Identities = 12/36 (33%), Positives = 18/36 (50%)
Query: 324 HTGVKPHKCPICTKGFTMKSSLKIHLLTHTKEPPKS 359
+G KP+ CP+C F K + H+ +H KS
Sbjct: 5 SSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKS 40
Score = 30.3 bits (67), Expect = 0.21
Identities = 12/28 (42%), Positives = 13/28 (46%)
Query: 129 EKLYECDICKNRFPSSGAMKKHRRKHTG 156
EK Y C +C RF M H R H G
Sbjct: 8 EKPYSCPVCGLRFKRKDRMSYHVRSHDG 35
Score = 29.1 bits (64), Expect = 0.48
Identities = 11/33 (33%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 267 HTGENGHTCELCNKTFNRKARLELHMKYIHEGA 299
+GE ++C +C F RK R+ H++ H+G+
Sbjct: 5 SSGEKPYSCPVCGLRFKRKDRMSYHVR-SHDGS 36
Score = 27.2 bits (59), Expect = 2.3
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 76 KVCGRVFNRKDNLREHLRAHAG 97
VCG F RKD + H+R+H G
Sbjct: 14 PVCGLRFKRKDRMSYHVRSHDG 35
Score = 26.4 bits (57), Expect = 5.0
Identities = 11/36 (30%), Positives = 17/36 (47%)
Query: 239 HSGVKPHVCEYCEKAFIQASQLKAHMFHHTGENGHT 274
SG KP+ C C F + ++ H+ H G G +
Sbjct: 5 SSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKS 40
>3kt7_A PKHD-type hydroxylase TPA1; double-stranded beta helix fold,
dioxygenase, iron, mRNP complex, prolyl hydroxylase;
HET: AKG; 1.77A {Saccharomyces cerevisiae} PDB: 3kt1_A
3kt4_A 3mgu_A
Length = 633
Score = 41.1 bits (95), Expect = 0.001
Identities = 39/233 (16%), Positives = 61/233 (26%), Gaps = 54/233 (23%)
Query: 627 FHHTNNDRVHSDMIENVIRDMDQYGLCVVDNFLGPERGMAVLHEVLGMYHSGVFKDGQLV 686
F+ D+ D ++ I D Y + + + AV E+ H K+ +
Sbjct: 11 FNPKIWDKTFQDGLKKEIEDSQPYNWGTIHELVNDDLLRAVRKEIETEIHF-TKKETDIY 69
Query: 687 SNKSTNKQDLKTIRGDQITWIDGRETYCSNIGRLISEVDAIIMRANRMVNN--------- 737
+ DL + G + L S+
Sbjct: 70 RVNQSG--DLANLSGLDWDDLSRLPNLFKLRQILYSKQYRDFFGYVTKAGKLSGSKTDMS 127
Query: 738 ---GRMGDF------VINGR---------------TKQNGGLLRIFPEG-----GGDKVA 768
G VI R GG LR+FP D A
Sbjct: 128 INTYTKGCHLLTHDDVIGSRRISFILYLPDPDRKWKSHYGGGLRLFPSILPNVPHSDPSA 187
Query: 769 DIEPMFDRILFFWSDRRNPHEAMVACYPGHGSHYVKHVDNPNRDGRCITAIYY 821
+ P F++I FF PG H + V ++ I Y+
Sbjct: 188 KLVPQFNQIAFF------------KVLPGFSFHDXEEV-KVDKHRLSIQGWYH 227
>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger,
transcription; NMR {Homo sapiens}
Length = 29
Score = 35.5 bits (81), Expect = 0.002
Identities = 17/28 (60%), Positives = 18/28 (64%)
Query: 243 KPHVCEYCEKAFIQASQLKAHMFHHTGE 270
KP C C KAF QAS L AH+ HTGE
Sbjct: 1 KPCQCVMCGKAFTQASSLIAHVRQHTGE 28
Score = 31.3 bits (70), Expect = 0.061
Identities = 14/28 (50%), Positives = 17/28 (60%)
Query: 328 KPHKCPICTKGFTMKSSLKIHLLTHTKE 355
KP +C +C K FT SSL H+ HT E
Sbjct: 1 KPCQCVMCGKAFTQASSLIAHVRQHTGE 28
Score = 27.8 bits (61), Expect = 1.0
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 357 PKSCEVCGRAFIRQDCLIRHLRQ 379
P C +CG+AF + LI H+RQ
Sbjct: 2 PCQCVMCGKAFTQASSLIAHVRQ 24
Score = 26.3 bits (57), Expect = 3.9
Identities = 11/29 (37%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Query: 158 RPYECKEVCGRVFNRKDNLREHLRAHAGE 186
+P +C +CG+ F + +L H+R H GE
Sbjct: 1 KPCQCV-MCGKAFTQASSLIAHVRQHTGE 28
Score = 25.9 bits (56), Expect = 4.6
Identities = 12/28 (42%), Positives = 14/28 (50%)
Query: 301 PYQCDICRKTFIRKEDLTRHCLLHTGVK 328
P QC +C K F + L H HTG K
Sbjct: 2 PCQCVMCGKAFTQASSLIAHVRQHTGEK 29
Score = 25.9 bits (56), Expect = 5.0
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 134 CDICKNRFPSSGAMKKHRRKHTGER 158
C +C F + ++ H R+HTGE+
Sbjct: 5 CVMCGKAFTQASSLIAHVRQHTGEK 29
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger,
transcription; NMR {Homo sapiens}
Length = 26
Score = 34.7 bits (79), Expect = 0.004
Identities = 15/25 (60%), Positives = 19/25 (76%)
Query: 243 KPHVCEYCEKAFIQASQLKAHMFHH 267
KP+VCE C K F+Q+SQL H+ HH
Sbjct: 1 KPYVCERCGKRFVQSSQLANHIRHH 25
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 30
Score = 34.4 bits (79), Expect = 0.005
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 357 PKSCEVCGRAFIRQDCLIRHLRQKHRSHL 385
+C +C RAF R+D LIRH ++ H +L
Sbjct: 2 AYACGLCNRAFTRRDLLIRHAQKIHSGNL 30
Score = 29.8 bits (67), Expect = 0.23
Identities = 10/27 (37%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Query: 301 PYQCDICRKTFIRKEDLTRHCL-LHTG 326
Y C +C + F R++ L RH +H+G
Sbjct: 2 AYACGLCNRAFTRRDLLIRHAQKIHSG 28
Score = 26.7 bits (59), Expect = 2.7
Identities = 11/29 (37%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
Query: 158 RPYECKEVCGRVFNRKDNLREHLRA-HAG 185
+ Y C +C R F R+D L H + H+G
Sbjct: 1 KAYAC-GLCNRAFTRRDLLIRHAQKIHSG 28
>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif,
transcription regulation, zinc-finger; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 47
Score = 34.8 bits (80), Expect = 0.005
Identities = 10/39 (25%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Query: 61 SYKSKEEEKQ-ICTYIKVCGRVFNRKDNLREHLRAHAGE 98
Y + +K C + C + F R+ N+R H++ H +
Sbjct: 9 KYVKEMPDKTFECLF-PGCTKTFKRRYNIRSHIQTHLED 46
Score = 34.5 bits (79), Expect = 0.008
Identities = 9/31 (29%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 157 ERPYECK-EVCGRVFNRKDNLREHLRAHAGE 186
++ +EC C + F R+ N+R H++ H +
Sbjct: 16 DKTFECLFPGCTKTFKRRYNIRSHIQTHLED 46
Score = 27.1 bits (60), Expect = 2.4
Identities = 12/37 (32%), Positives = 18/37 (48%), Gaps = 3/37 (8%)
Query: 293 KYIHEGAD-PYQCDI--CRKTFIRKEDLTRHCLLHTG 326
KY+ E D ++C C KTF R+ ++ H H
Sbjct: 9 KYVKEMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLE 45
Score = 26.4 bits (58), Expect = 5.3
Identities = 9/30 (30%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Query: 328 KPHKCPI--CTKGFTMKSSLKIHLLTHTKE 355
K +C CTK F + +++ H+ TH ++
Sbjct: 17 KTFECLFPGCTKTFKRRYNIRSHIQTHLED 46
Score = 25.6 bits (56), Expect = 9.8
Identities = 8/32 (25%), Positives = 14/32 (43%), Gaps = 2/32 (6%)
Query: 129 EKLYECDI--CKNRFPSSGAMKKHRRKHTGER 158
+K +EC C F ++ H + H +R
Sbjct: 16 DKTFECLFPGCTKTFKRRYNIRSHIQTHLEDR 47
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription;
NMR {Mus musculus} SCOP: g.37.1.1
Length = 35
Score = 34.3 bits (78), Expect = 0.005
Identities = 11/30 (36%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Query: 154 HTGERPYECKEVCGRVFNRKDNLREHLRAH 183
+G+RP+ C+ +C F K N HL+ H
Sbjct: 2 SSGKRPFVCR-ICLSAFTTKANCARHLKVH 30
Score = 30.5 bits (68), Expect = 0.14
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 324 HTGVKPHKCPICTKGFTMKSSLKIHLLTHT 353
+G +P C IC FT K++ HL HT
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARHLKVHT 31
Score = 29.3 bits (65), Expect = 0.32
Identities = 11/30 (36%), Positives = 14/30 (46%)
Query: 296 HEGADPYQCDICRKTFIRKEDLTRHCLLHT 325
G P+ C IC F K + RH +HT
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARHLKVHT 31
Score = 27.0 bits (59), Expect = 2.4
Identities = 11/30 (36%), Positives = 14/30 (46%)
Query: 239 HSGVKPHVCEYCEKAFIQASQLKAHMFHHT 268
SG +P VC C AF + H+ HT
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARHLKVHT 31
Score = 27.0 bits (59), Expect = 2.6
Identities = 8/27 (29%), Positives = 12/27 (44%)
Query: 267 HTGENGHTCELCNKTFNRKARLELHMK 293
+G+ C +C F KA H+K
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARHLK 28
>3n71_A Histone lysine methyltransferase SMYD1; heart development,
transcription; HET: SFG MES; 2.30A {Mus musculus}
Length = 490
Score = 39.2 bits (90), Expect = 0.006
Identities = 13/33 (39%), Positives = 15/33 (45%)
Query: 425 ENLLRCSKCKVTFYCSKQHQTLDWKAHKINCNI 457
E L RC +CK YC + Q W HK C
Sbjct: 60 EKLHRCGQCKFAHYCDRTCQKDAWLNHKNECAA 92
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger,
classical zinc finger, transcription; NMR {Homo sapiens}
Length = 30
Score = 34.0 bits (77), Expect = 0.008
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 242 VKPHVCEYCEKAFIQASQLKAHMFHHTGE 270
+KP+VC +C++ F L+ H+ HTGE
Sbjct: 1 MKPYVCIHCQRQFADPGALQRHVRIHTGE 29
Score = 32.0 bits (72), Expect = 0.031
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 130 KLYECDICKNRFPSSGAMKKHRRKHTGER 158
K Y C C+ +F GA+++H R HTGE+
Sbjct: 2 KPYVCIHCQRQFADPGALQRHVRIHTGEK 30
Score = 29.7 bits (66), Expect = 0.22
Identities = 12/29 (41%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Query: 158 RPYECKEVCGRVFNRKDNLREHLRAHAGE 186
+PY C C R F L+ H+R H GE
Sbjct: 2 KPYVCIH-CQRQFADPGALQRHVRIHTGE 29
Score = 28.2 bits (62), Expect = 0.84
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 327 VKPHKCPICTKGFTMKSSLKIHLLTHTKE 355
+KP+ C C + F +L+ H+ HT E
Sbjct: 1 MKPYVCIHCQRQFADPGALQRHVRIHTGE 29
Score = 27.8 bits (61), Expect = 0.96
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 301 PYQCDICRKTFIRKEDLTRHCLLHTGVK 328
PY C C++ F L RH +HTG K
Sbjct: 3 PYVCIHCQRQFADPGALQRHVRIHTGEK 30
>1ej6_B Lambda1; icosahedral, non-equivalence, dsRNA virus, methylase,
methyltransferase, guanylyltransferase, zinc finger,
icosahedral virus; 3.60A {Reovirus SP} SCOP: i.7.1.1
PDB: 2cse_V
Length = 1275
Score = 38.7 bits (89), Expect = 0.009
Identities = 7/55 (12%), Positives = 14/55 (25%)
Query: 189 RKKKFKCDKCEKQFYGLTLLRIHERLHGLIERTCYARFAAKETLNRHMKTHSGVK 243
++C C + L H HGL + + + +
Sbjct: 177 SGHGYQCHVCSAVLFSPLDLDAHVASHGLHGNMTLTSSEIQRHITEFISSWQNHP 231
Score = 36.8 bits (84), Expect = 0.034
Identities = 5/27 (18%), Positives = 8/27 (29%)
Query: 101 RKKKFKCDKCEKQFYGLTLLRIHERLH 127
++C C + L H H
Sbjct: 177 SGHGYQCHVCSAVLFSPLDLDAHVASH 203
Score = 36.4 bits (83), Expect = 0.044
Identities = 9/50 (18%), Positives = 15/50 (30%), Gaps = 1/50 (2%)
Query: 134 CDICKNRFPSSGAMKKHRRKHTGERPYECKEVCGRVFNRKDNLREHLRAH 183
+ A + Y+C VC V +L H+ +H
Sbjct: 155 AEATSAIVSKHPARVGLPPTASSGHGYQC-HVCSAVLFSPLDLDAHVASH 203
Score = 35.6 bits (81), Expect = 0.077
Identities = 5/58 (8%), Positives = 14/58 (24%)
Query: 299 ADPYQCDICRKTFIRKEDLTRHCLLHTGVKPHKCPICTKGFTMKSSLKIHLLTHTKEP 356
+ + + ++C +C+ L H+ +H
Sbjct: 150 MSTRIAEATSAIVSKHPARVGLPPTASSGHGYQCHVCSAVLFSPLDLDAHVASHGLHG 207
Score = 35.2 bits (80), Expect = 0.100
Identities = 6/28 (21%), Positives = 10/28 (35%)
Query: 127 HAEKLYECDICKNRFPSSGAMKKHRRKH 154
+ Y+C +C S + H H
Sbjct: 176 SSGHGYQCHVCSAVLFSPLDLDAHVASH 203
Score = 35.2 bits (80), Expect = 0.10
Identities = 9/37 (24%), Positives = 11/37 (29%), Gaps = 1/37 (2%)
Query: 237 KTHSGVKPHVCEYCEKAFIQASQLKAHM-FHHTGENG 272
T S + C C L AH+ H N
Sbjct: 173 PTASSGHGYQCHVCSAVLFSPLDLDAHVASHGLHGNM 209
Score = 34.1 bits (77), Expect = 0.24
Identities = 9/64 (14%), Positives = 16/64 (25%), Gaps = 1/64 (1%)
Query: 327 VKPHKCPICTKGFTMKSSLKIHLLTHTKEPPKSCEVCGRAFIRQDCLIRHLRQKHRSHLD 386
+ + + + T + C VC L H+ H H +
Sbjct: 150 MSTRIAEATSAIVSKHPARVGLPPTASSGHGYQCHVCSAVLFSPLDLDAHVAS-HGLHGN 208
Query: 387 EVLA 390
L
Sbjct: 209 MTLT 212
Score = 30.6 bits (68), Expect = 2.9
Identities = 6/51 (11%), Positives = 16/51 (31%)
Query: 242 VKPHVCEYCEKAFIQASQLKAHMFHHTGENGHTCELCNKTFNRKARLELHM 292
+ + E + + +G+ C +C+ L+ H+
Sbjct: 150 MSTRIAEATSAIVSKHPARVGLPPTASSGHGYQCHVCSAVLFSPLDLDAHV 200
>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 96
Score = 35.6 bits (81), Expect = 0.009
Identities = 13/63 (20%), Positives = 22/63 (34%), Gaps = 1/63 (1%)
Query: 98 ETKRKKKFKCDKCEKQFY-GLTLLRIHERLHAEKLYECDICKNRFPSSGAMKKHRRKHTG 156
E K C C+ + L+ H ++++ C C + S MK H +
Sbjct: 28 EIVDKGSVSCPTCQAVGRKTIEGLKKHMENCKQEMFTCHHCGKQLRSLAGMKYHVMANHN 87
Query: 157 ERP 159
P
Sbjct: 88 SLP 90
Score = 29.5 bits (65), Expect = 1.2
Identities = 13/52 (25%), Positives = 20/52 (38%), Gaps = 2/52 (3%)
Query: 246 VCEYCEKAFIQA-SQLKAHMFHHTGENGHTCELCNKTFNRKARLELHMKYIH 296
C C+ + LK HM + + TC C K A ++ H+ H
Sbjct: 36 SCPTCQAVGRKTIEGLKKHMENC-KQEMFTCHHCGKQLRSLAGMKYHVMANH 86
Score = 28.7 bits (63), Expect = 2.3
Identities = 10/56 (17%), Positives = 17/56 (30%), Gaps = 1/56 (1%)
Query: 274 TCELCNKTFNRKARLELHMKYIHEGADPYQCDICRKTFIRKEDLTRHCLLHTGVKP 329
+C C RK L + + + C C K + H + + P
Sbjct: 36 SCPTCQ-AVGRKTIEGLKKHMENCKQEMFTCHHCGKQLRSLAGMKYHVMANHNSLP 90
Score = 28.3 bits (62), Expect = 3.1
Identities = 10/63 (15%), Positives = 23/63 (36%), Gaps = 3/63 (4%)
Query: 121 RIHERLHAEKLYECDICKN-RFPSSGAMKKHRRKHTGERPYECKEVCGRVFNRKDNLREH 179
+ + + + C C+ + +KKH + + C CG+ ++ H
Sbjct: 24 QWYLEIVDKGSVSCPTCQAVGRKTIEGLKKHMENC-KQEMFTCHH-CGKQLRSLAGMKYH 81
Query: 180 LRA 182
+ A
Sbjct: 82 VMA 84
Score = 28.3 bits (62), Expect = 3.1
Identities = 14/59 (23%), Positives = 23/59 (38%), Gaps = 5/59 (8%)
Query: 302 YQCDICRKTFIRK--EDLTRHCLLHTGVKPHKCPICTKGFTMKSSLKIHLLT-HTKEPP 357
C C + RK E L +H + + + C C K + +K H++ H P
Sbjct: 35 VSCPTC-QAVGRKTIEGLKKH-MENCKQEMFTCHHCGKQLRSLAGMKYHVMANHNSLPS 91
Score = 27.9 bits (61), Expect = 4.9
Identities = 10/73 (13%), Positives = 25/73 (34%), Gaps = 5/73 (6%)
Query: 141 FPSSGAMKKHRRKHTGERPYECKEVCGRVFNRKDNLREHLRAHAGETKRKKKFKCDKCEK 200
+ + ++ + + C + L++H+ +++ F C C K
Sbjct: 16 YAAGSLEEQWYLEIVDKGSVSCPTCQAVGRKTIEGLKKHMENC-----KQEMFTCHHCGK 70
Query: 201 QFYGLTLLRIHER 213
Q L ++ H
Sbjct: 71 QLRSLAGMKYHVM 83
Score = 27.1 bits (59), Expect = 8.9
Identities = 14/54 (25%), Positives = 21/54 (38%), Gaps = 2/54 (3%)
Query: 331 KCPICTK-GFTMKSSLKIHLLTHTKEPPKSCEVCGRAFIRQDCLIRHLRQKHRS 383
CP C G LK H+ + K+ +C CG+ + H+ H S
Sbjct: 36 SCPTCQAVGRKTIEGLKKHM-ENCKQEMFTCHHCGKQLRSLAGMKYHVMANHNS 88
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90,
transferase-transferase inhibitor; HET: SFG; 1.80A {Mus
musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A*
3tg4_A* 3tg5_A* 3rib_A*
Length = 433
Score = 37.9 bits (87), Expect = 0.012
Identities = 14/34 (41%), Positives = 20/34 (58%)
Query: 425 ENLLRCSKCKVTFYCSKQHQTLDWKAHKINCNIL 458
E L +C +CK FYC + Q DW HK+ C+ +
Sbjct: 60 EGLSKCGRCKQAFYCDVECQKEDWPLHKLECSSM 93
>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA
motif, metal binding protein; NMR {Synthetic} SCOP:
g.37.1.3 PDB: 2l1o_A
Length = 39
Score = 32.8 bits (75), Expect = 0.019
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 130 KLYECDICKNRFPSSGAMKKHRRKHTGER 158
+ Y C CK F S+ A+ H H +R
Sbjct: 5 RSYTCSFCKREFRSAQALGGHMNVHRRDR 33
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND
domain, zinc finger MYND domain-containin 1, structural
genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A*
3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Length = 429
Score = 37.2 bits (85), Expect = 0.022
Identities = 16/36 (44%), Positives = 21/36 (58%)
Query: 425 ENLLRCSKCKVTFYCSKQHQTLDWKAHKINCNILSN 460
E L+RCS+C+V YCS + Q W HK C L +
Sbjct: 58 EKLMRCSQCRVAKYCSAKCQKKAWPDHKRECKCLKS 93
>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 32.9 bits (74), Expect = 0.028
Identities = 14/27 (51%), Positives = 17/27 (62%)
Query: 102 KKKFKCDKCEKQFYGLTLLRIHERLHA 128
+K FKC+KCEK F L HER+H
Sbjct: 10 EKCFKCNKCEKTFSCSKYLTQHERIHT 36
Score = 32.5 bits (73), Expect = 0.039
Identities = 14/26 (53%), Positives = 17/26 (65%)
Query: 190 KKKFKCDKCEKQFYGLTLLRIHERLH 215
+K FKC+KCEK F L HER+H
Sbjct: 10 EKCFKCNKCEKTFSCSKYLTQHERIH 35
Score = 29.4 bits (65), Expect = 0.45
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 296 HEGADPYQCDICRKTFIRKEDLTRHCLLHT-GVK 328
+ ++C+ C KTF + LT+H +HT GVK
Sbjct: 7 GQKEKCFKCNKCEKTFSCSKYLTQHERIHTRGVK 40
Score = 27.9 bits (61), Expect = 1.7
Identities = 8/31 (25%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 154 HTGERPYECKEVCGRVFNRKDNLREHLRAHA 184
E+ ++C + C + F+ L +H R H
Sbjct: 7 GQKEKCFKCNK-CEKTFSCSKYLTQHERIHT 36
Score = 27.1 bits (59), Expect = 2.8
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 128 AEKLYECDICKNRFPSSGAMKKHRRKHT 155
EK ++C+ C+ F S + +H R HT
Sbjct: 9 KEKCFKCNKCEKTFSCSKYLTQHERIHT 36
>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 31.8 bits (71), Expect = 0.067
Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 156 GERPYECKEVCGRVFNRKDNLREHLRAHAGET 187
+ EC+E CG++F L EH HAGE+
Sbjct: 9 AKTTSECQE-CGKIFRHSSLLIEHQALHAGES 39
Score = 27.6 bits (60), Expect = 1.9
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 247 CEYCEKAFIQASQLKAHMFHHTGENG 272
C+ C K F +S L H H GE+G
Sbjct: 15 CQECGKIFRHSSLLIEHQALHAGESG 40
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein,
abnormal nuclear; zinc-finger, beta barrel, VWA domain,
gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP:
a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1
Length = 926
Score = 36.0 bits (82), Expect = 0.068
Identities = 28/217 (12%), Positives = 72/217 (33%), Gaps = 31/217 (14%)
Query: 402 LAAAATELTSVLEDGEEEGDEGEENLLRCSKCK--VTFYCSKQHQTLDWKAHKINCNILS 459
+ +D + + ++RC +C+ + + + Q W+ CN
Sbjct: 203 FGLVIRPYQHLYDDIDPPPLNEDGLIVRCRRCRSYMNPFVTFIEQGRRWR-----CNF-- 255
Query: 460 NQSATNNTSLANNTPQVAQIQNQFPLSNQYFHEGSSENEIANSTVQYLNPSLFQNNTPNQ 519
LAN+ P NEI + ++Y+ P + P
Sbjct: 256 -------CRLANDVPM-----QMDQSDPNDPKSRYDRNEIKCAVMEYMAPKEYTLRQPPP 303
Query: 520 -----LVDTAGTSRAPGPSNMNTQYGLYSDIPILNENNGQNNLTNMHLDTNVVVVPPFHH 574
L+D + +S G L ++ + ++ + ++ + +D + +
Sbjct: 304 ATYCFLIDVSQSSIKSGLLATTIN-TLLQNLDSIPNHDERTRISILCVDNAI----HYFK 358
Query: 575 TNNDRVHSDIMIEKMCHNVIRDMDQYGLCVLDDFLGP 611
D +++ +++ I D+++ L + +
Sbjct: 359 IPLDSENNEESADQINMMDIADLEEPFLPRPNSMVVS 395
>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 98
Score = 33.0 bits (74), Expect = 0.076
Identities = 17/57 (29%), Positives = 23/57 (40%), Gaps = 1/57 (1%)
Query: 274 TCELCNKTFNRK-ARLELHMKYIHEGADPYQCDICRKTFIRKEDLTRHCLLHTGVKP 329
C CN + L+ HM+ + D +C CRK F K L H + KP
Sbjct: 26 VCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMAEHSAKP 82
Score = 31.8 bits (71), Expect = 0.17
Identities = 16/54 (29%), Positives = 20/54 (37%), Gaps = 2/54 (3%)
Query: 246 VCEYCEKAFIQA-SQLKAHMFH-HTGENGHTCELCNKTFNRKARLELHMKYIHE 297
VC C + LK HM ++ C+ C K F KA L H H
Sbjct: 26 VCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMAEHS 79
Score = 31.5 bits (70), Expect = 0.28
Identities = 16/60 (26%), Positives = 22/60 (36%), Gaps = 5/60 (8%)
Query: 302 YQCDICRKTFIRK--EDLTRHC-LLHTGVKPHKCPICTKGFTMKSSLKIHLL-THTKEPP 357
C C RK L +H + KC C K F K+ L H + H+ +P
Sbjct: 25 AVCPTC-NVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMAEHSAKPS 83
Score = 28.0 bits (61), Expect = 4.5
Identities = 12/65 (18%), Positives = 21/65 (32%), Gaps = 3/65 (4%)
Query: 98 ETKRKKKFKCDKCEKQFYG-LTLLRIH-ERLHAEK-LYECDICKNRFPSSGAMKKHRRKH 154
+ + C C L L+ H E + +C C+ +F S + H
Sbjct: 18 AIHERGEAVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMAE 77
Query: 155 TGERP 159
+P
Sbjct: 78 HSAKP 82
Score = 27.6 bits (60), Expect = 5.9
Identities = 14/55 (25%), Positives = 22/55 (40%), Gaps = 4/55 (7%)
Query: 332 CPICTKGFTMKS--SLKIHLLT-HTKEPPKSCEVCGRAFIRQDCLIRHLRQKHRS 383
CP C T K+ LK H+ + C+ C + F + L H +H +
Sbjct: 27 CPTC-NVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMAEHSA 80
>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 31.3 bits (70), Expect = 0.080
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 127 HAEKLYECDICKNRFPSSGAMKKHRRKHTGE 157
+ K + CD+C +F S G +K H+ HT +
Sbjct: 5 SSGKTHLCDMCGKKFKSKGTLKSHKLLHTAD 35
Score = 28.6 bits (63), Expect = 0.67
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 328 KPHKCPICTKGFTMKSSLKIHLLTHTKE 355
K H C +C K F K +LK H L HT +
Sbjct: 8 KTHLCDMCGKKFKSKGTLKSHKLLHTAD 35
Score = 27.1 bits (59), Expect = 2.6
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 243 KPHVCEYCEKAFIQASQLKAHMFHHTGE 270
K H+C+ C K F LK+H HT +
Sbjct: 8 KTHLCDMCGKKFKSKGTLKSHKLLHTAD 35
>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Mus musculus}
Length = 35
Score = 30.9 bits (69), Expect = 0.090
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 268 TGENGHTCELCNKTFNRKARLELHMKYIHEGA 299
+G +G+ C LC K F RL H++ +H A
Sbjct: 3 SGSSGYVCALCLKKFVSSIRLRSHIREVHGAA 34
>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 32
Score = 30.7 bits (69), Expect = 0.091
Identities = 13/27 (48%), Positives = 14/27 (51%), Gaps = 2/27 (7%)
Query: 301 PYQCDI--CRKTFIRKEDLTRHCLLHT 325
PY CD C K F+R DL RH H
Sbjct: 3 PYSCDHPGCDKAFVRNHDLIRHKKSHQ 29
Score = 30.4 bits (68), Expect = 0.12
Identities = 10/32 (31%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 157 ERPYECK-EVCGRVFNRKDNLREHLRAHAGET 187
+RPY C C + F R +L H ++H +
Sbjct: 1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQEKA 32
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 33.8 bits (76), Expect = 0.10
Identities = 11/41 (26%), Positives = 14/41 (34%), Gaps = 18/41 (43%)
Query: 111 EKQFYGLTLLRIHERLHAEKLYECDICKNRFPSSG---AMK 148
EKQ L ++ L KLY S A+K
Sbjct: 18 EKQ----ALKKLQASL---KLYA--------DDSAPALAIK 43
Score = 32.2 bits (72), Expect = 0.33
Identities = 10/30 (33%), Positives = 16/30 (53%), Gaps = 8/30 (26%)
Query: 393 DK---KKLEAQL-L----AAAATELTSVLE 414
+K KKL+A L L +A A + + +E
Sbjct: 18 EKQALKKLQASLKLYADDSAPALAIKATME 47
>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 31.3 bits (70), Expect = 0.10
Identities = 11/36 (30%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 155 TGERPYECKEVCGRVFNRKDNLREHLRAHAGETKRK 190
+ E+ ++C+E CG +F + +L EH H G+
Sbjct: 8 SREKSHQCRE-CGEIFFQYVSLIEHQVLHMGQKNSG 42
Score = 30.9 bits (69), Expect = 0.13
Identities = 10/28 (35%), Positives = 12/28 (42%)
Query: 243 KPHVCEYCEKAFIQASQLKAHMFHHTGE 270
K H C C + F Q L H H G+
Sbjct: 11 KSHQCRECGEIFFQYVSLIEHQVLHMGQ 38
Score = 30.6 bits (68), Expect = 0.18
Identities = 10/31 (32%), Positives = 14/31 (45%)
Query: 301 PYQCDICRKTFIRKEDLTRHCLLHTGVKPHK 331
+QC C + F + L H +LH G K
Sbjct: 12 SHQCRECGEIFFQYVSLIEHQVLHMGQKNSG 42
Score = 27.5 bits (60), Expect = 2.1
Identities = 8/24 (33%), Positives = 11/24 (45%)
Query: 353 TKEPPKSCEVCGRAFIRQDCLIRH 376
++E C CG F + LI H
Sbjct: 8 SREKSHQCRECGEIFFQYVSLIEH 31
>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein,
helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis}
SCOP: g.37.1.4 g.37.1.4
Length = 127
Score = 33.0 bits (74), Expect = 0.13
Identities = 17/99 (17%), Positives = 27/99 (27%), Gaps = 4/99 (4%)
Query: 61 SYKSKEEEKQICTYIKVCGRVFNRKDNLREHL--RAHAGETKRKKKFKCDKCEKQFYGLT 118
S + T KVC V + H R HA + +R +
Sbjct: 21 SLIRENSHIFSDTQCKVCSAVLISESQKLAHYQSRKHANKVRRYMAINQGEDSVPAKKFK 80
Query: 119 LLRIHERLHAEKLYECDICKNRFPSSGAMKKHR--RKHT 155
++ C +C F S + H + H
Sbjct: 81 AAPAEISDGEDRSKCCPVCNMTFSSPVVAESHYIGKTHI 119
Score = 29.2 bits (64), Expect = 2.9
Identities = 16/82 (19%), Positives = 24/82 (29%), Gaps = 4/82 (4%)
Query: 243 KPHVCEYCEKAFIQASQLKAHM---FHHTGENGHTCELCNKTFNRKARLELHMKYIHEGA 299
C+ C I SQ AH H + + + + I +G
Sbjct: 31 SDTQCKVCSAVLISESQKLAHYQSRKHANKVRRYMAINQGEDSVPAKKFKAAPAEISDGE 90
Query: 300 DPYQ-CDICRKTFIRKEDLTRH 320
D + C +C TF H
Sbjct: 91 DRSKCCPVCNMTFSSPVVAESH 112
Score = 28.8 bits (63), Expect = 3.3
Identities = 16/91 (17%), Positives = 33/91 (36%), Gaps = 3/91 (3%)
Query: 43 HLCKGCYRIFTSQGYMLLSYKSKEEEKQICTYIKVCGRVFNRKDNLREHLRAHAGETKRK 102
CK C + S+ L Y+S++ ++ Y+ + + + A + + +
Sbjct: 33 TQCKVCSAVLISESQKLAHYQSRKHANKVRRYMAINQGEDSVPAKKFKAAPAEISDGEDR 92
Query: 103 KKFKCDKCEKQFYGLTLLRIH--ERLHAEKL 131
K C C F + H + H + L
Sbjct: 93 SKC-CPVCNMTFSSPVVAESHYIGKTHIKNL 122
>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 75
Score = 31.5 bits (71), Expect = 0.13
Identities = 14/64 (21%), Positives = 26/64 (40%), Gaps = 3/64 (4%)
Query: 230 ETLNRHMKTHSGVKPHVCEYCEKAFIQASQLKAHMFHHTGENGHTCELCNKTFNRKARLE 289
+ H +T ++ VC++C+ +LK H + G C C + K L+
Sbjct: 3 SGSSGHEETECPLRLAVCQHCDLEL-SILKLKEHE-DYCGARTELCGNCGRNVLVK-DLK 59
Query: 290 LHMK 293
H +
Sbjct: 60 THPE 63
Score = 29.2 bits (65), Expect = 1.1
Identities = 11/68 (16%), Positives = 18/68 (26%), Gaps = 2/68 (2%)
Query: 90 EHLRAHAGETKRKKKFKCDKCEKQFYGLTLLRIHERLHAEKLYECDICKNRFPSSGAMKK 149
H + C C+ + + L+ HE + C C +K
Sbjct: 3 SGSSGHEETECPLRLAVCQHCDLELS-ILKLKEHEDYCGARTELCGNCGRNVLVK-DLKT 60
Query: 150 HRRKHTGE 157
H E
Sbjct: 61 HPEVCGRE 68
Score = 26.9 bits (59), Expect = 6.1
Identities = 14/63 (22%), Positives = 21/63 (33%), Gaps = 4/63 (6%)
Query: 258 SQLKAHMFHHTGENGHTCELCNKTFNRKARLELHMKYIHEGADPYQCDICRKTFIRKEDL 317
S H C+ C+ + L+ H Y GA C C + + +DL
Sbjct: 3 SGSSGHEETECPLRLAVCQHCDLELSILK-LKEHEDYC--GARTELCGNCGR-NVLVKDL 58
Query: 318 TRH 320
H
Sbjct: 59 KTH 61
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA,
metal-binding, transcription; NMR {Mus musculus}
Length = 28
Score = 30.2 bits (67), Expect = 0.15
Identities = 9/27 (33%), Positives = 17/27 (62%)
Query: 327 VKPHKCPICTKGFTMKSSLKIHLLTHT 353
++P+ C +C K F++K ++ H HT
Sbjct: 1 MRPYSCSVCGKRFSLKHQMETHYRVHT 27
Score = 28.6 bits (63), Expect = 0.55
Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Query: 158 RPYECKEVCGRVFNRKDNLREHLRAHAG 185
RPY C VCG+ F+ K + H R H G
Sbjct: 2 RPYSCS-VCGKRFSLKHQMETHYRVHTG 28
Score = 27.5 bits (60), Expect = 1.3
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 301 PYQCDICRKTFIRKEDLTRHCLLHTG 326
PY C +C K F K + H +HTG
Sbjct: 3 PYSCSVCGKRFSLKHQMETHYRVHTG 28
Score = 26.7 bits (58), Expect = 2.3
Identities = 11/25 (44%), Positives = 13/25 (52%)
Query: 132 YECDICKNRFPSSGAMKKHRRKHTG 156
Y C +C RF M+ H R HTG
Sbjct: 4 YSCSVCGKRFSLKHQMETHYRVHTG 28
Score = 25.9 bits (56), Expect = 5.5
Identities = 10/28 (35%), Positives = 15/28 (53%)
Query: 242 VKPHVCEYCEKAFIQASQLKAHMFHHTG 269
++P+ C C K F Q++ H HTG
Sbjct: 1 MRPYSCSVCGKRFSLKHQMETHYRVHTG 28
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 30.6 bits (68), Expect = 0.15
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 328 KPHKCPICTKGFTMKSSLKIHLLTHTKE 355
KP+KCP C+ +K++L +HL HT E
Sbjct: 8 KPYKCPQCSYASAIKANLNVHLRKHTGE 35
Score = 28.3 bits (62), Expect = 0.76
Identities = 11/28 (39%), Positives = 14/28 (50%)
Query: 243 KPHVCEYCEKAFIQASQLKAHMFHHTGE 270
KP+ C C A + L H+ HTGE
Sbjct: 8 KPYKCPQCSYASAIKANLNVHLRKHTGE 35
Score = 27.9 bits (61), Expect = 1.2
Identities = 11/29 (37%), Positives = 14/29 (48%)
Query: 130 KLYECDICKNRFPSSGAMKKHRRKHTGER 158
K Y+C C + H RKHTGE+
Sbjct: 8 KPYKCPQCSYASAIKANLNVHLRKHTGEK 36
Score = 27.5 bits (60), Expect = 1.5
Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 155 TGERPYECKEVCGRVFNRKDNLREHLRAHAGE 186
+ +PY+C + C K NL HLR H GE
Sbjct: 5 SSGKPYKCPQ-CSYASAIKANLNVHLRKHTGE 35
Score = 27.1 bits (59), Expect = 2.3
Identities = 11/28 (39%), Positives = 13/28 (46%)
Query: 301 PYQCDICRKTFIRKEDLTRHCLLHTGVK 328
PY+C C K +L H HTG K
Sbjct: 9 PYKCPQCSYASAIKANLNVHLRKHTGEK 36
>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 30.2 bits (67), Expect = 0.19
Identities = 14/31 (45%), Positives = 16/31 (51%)
Query: 240 SGVKPHVCEYCEKAFIQASQLKAHMFHHTGE 270
S K CEYC K F L+AH+ HT E
Sbjct: 5 SSGKIFTCEYCNKVFKFKHSLQAHLRIHTNE 35
Score = 29.0 bits (64), Expect = 0.40
Identities = 13/31 (41%), Positives = 15/31 (48%)
Query: 325 TGVKPHKCPICTKGFTMKSSLKIHLLTHTKE 355
+ K C C K F K SL+ HL HT E
Sbjct: 5 SSGKIFTCEYCNKVFKFKHSLQAHLRIHTNE 35
Score = 28.3 bits (62), Expect = 0.99
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 164 EVCGRVFNRKDNLREHLRAHAGE 186
E C +VF K +L+ HLR H E
Sbjct: 13 EYCNKVFKFKHSLQAHLRIHTNE 35
Score = 26.7 bits (58), Expect = 3.0
Identities = 10/20 (50%), Positives = 13/20 (65%)
Query: 274 TCELCNKTFNRKARLELHMK 293
TCE CNK F K L+ H++
Sbjct: 11 TCEYCNKVFKFKHSLQAHLR 30
Score = 26.7 bits (58), Expect = 3.3
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 78 CGRVFNRKDNLREHLRAHAGE 98
C +VF K +L+ HLR H E
Sbjct: 15 CNKVFKFKHSLQAHLRIHTNE 35
Score = 26.4 bits (57), Expect = 4.0
Identities = 10/27 (37%), Positives = 13/27 (48%)
Query: 302 YQCDICRKTFIRKEDLTRHCLLHTGVK 328
+ C+ C K F K L H +HT K
Sbjct: 10 FTCEYCNKVFKFKHSLQAHLRIHTNEK 36
Score = 26.0 bits (56), Expect = 5.1
Identities = 9/29 (31%), Positives = 16/29 (55%)
Query: 130 KLYECDICKNRFPSSGAMKKHRRKHTGER 158
K++ C+ C F +++ H R HT E+
Sbjct: 8 KIFTCEYCNKVFKFKHSLQAHLRIHTNEK 36
>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 29.9 bits (66), Expect = 0.21
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 328 KPHKCPICTKGFTMKSSLKIHLLTHTKE 355
KP KC +C KS+LK H+ H+ E
Sbjct: 8 KPFKCSLCEYATRSKSNLKAHMNRHSTE 35
Score = 29.1 bits (64), Expect = 0.47
Identities = 15/31 (48%), Positives = 16/31 (51%)
Query: 240 SGVKPHVCEYCEKAFIQASQLKAHMFHHTGE 270
S KP C CE A S LKAHM H+ E
Sbjct: 5 SSGKPFKCSLCEYATRSKSNLKAHMNRHSTE 35
>3ray_A PR domain-containing protein 11; structural genomics consortium,
SGC, histone methylation, Zn transcriptional regulation,
chromatin, transcription; 1.73A {Homo sapiens}
Length = 237
Score = 33.3 bits (75), Expect = 0.24
Identities = 8/48 (16%), Positives = 12/48 (25%)
Query: 225 RFAAKETLNRHMKTHSGVKPHVCEYCEKAFIQASQLKAHMFHHTGENG 272
R + H G K E E+ L+ + G
Sbjct: 189 RLHSMSQETIHRNLARGEKRLQREKSEQVLDNPEDLRGPIHLSVLRQG 236
Score = 31.3 bits (70), Expect = 1.1
Identities = 9/48 (18%), Positives = 12/48 (25%)
Query: 247 CEYCEKAFIQASQLKAHMFHHTGENGHTCELCNKTFNRKARLELHMKY 294
E K SQ H GE E + + L +
Sbjct: 183 SEDYMKRLHSMSQETIHRNLARGEKRLQREKSEQVLDNPEDLRGPIHL 230
Score = 30.6 bits (68), Expect = 1.6
Identities = 9/51 (17%), Positives = 16/51 (31%), Gaps = 1/51 (1%)
Query: 275 CELCNKTFNRKARLELHMKYIHEGADPYQCDICRKTFIRKEDLTRHCLLHT 325
E K + ++ +H + G Q + + EDL L
Sbjct: 183 SEDYMKRLHSMSQETIHRN-LARGEKRLQREKSEQVLDNPEDLRGPIHLSV 232
Score = 30.6 bits (68), Expect = 1.7
Identities = 6/53 (11%), Positives = 18/53 (33%), Gaps = 1/53 (1%)
Query: 107 CDKCEKQFYGLTLLRIHERLHA-EKLYECDICKNRFPSSGAMKKHRRKHTGER 158
+ K+ + ++ IH L EK + + + + ++ +
Sbjct: 183 SEDYMKRLHSMSQETIHRNLARGEKRLQREKSEQVLDNPEDLRGPIHLSVLRQ 235
Score = 30.2 bits (67), Expect = 2.2
Identities = 9/54 (16%), Positives = 22/54 (40%), Gaps = 1/54 (1%)
Query: 130 KLYECDICKNRFPSSGAMKKHRRKHTGERPYECKEVCGRVFNRKDNLREHLRAH 183
+++ + R S HR GE+ + ++ +V + ++LR +
Sbjct: 179 RVWYSEDYMKRLHSMSQETIHRNLARGEKRLQREK-SEQVLDNPEDLRGPIHLS 231
Score = 29.8 bits (66), Expect = 3.6
Identities = 7/52 (13%), Positives = 18/52 (34%)
Query: 79 GRVFNRKDNLREHLRAHAGETKRKKKFKCDKCEKQFYGLTLLRIHERLHAEK 130
+ ++ + H + +K+ + +K E+ LR L +
Sbjct: 183 SEDYMKRLHSMSQETIHRNLARGEKRLQREKSEQVLDNPEDLRGPIHLSVLR 234
Score = 29.4 bits (65), Expect = 3.9
Identities = 7/53 (13%), Positives = 10/53 (18%)
Query: 332 CPICTKGFTMKSSLKIHLLTHTKEPPKSCEVCGRAFIRQDCLIRHLRQKHRSH 384
K S IH E E + + L +
Sbjct: 183 SEDYMKRLHSMSQETIHRNLARGEKRLQREKSEQVLDNPEDLRGPIHLSVLRQ 235
Score = 29.4 bits (65), Expect = 4.5
Identities = 7/49 (14%), Positives = 17/49 (34%)
Query: 167 GRVFNRKDNLREHLRAHAGETKRKKKFKCDKCEKQFYGLTLLRIHERLH 215
+ ++ + H + +K+ + +K E+ LR L
Sbjct: 183 SEDYMKRLHSMSQETIHRNLARGEKRLQREKSEQVLDNPEDLRGPIHLS 231
>4a1a_O RPL19, 60S ribosomal protein L5; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1c_O 4a1e_O
Length = 185
Score = 31.9 bits (72), Expect = 0.55
Identities = 6/33 (18%), Positives = 12/33 (36%)
Query: 74 YIKVCGRVFNRKDNLREHLRAHAGETKRKKKFK 106
Y+ G ++ K L E + + + K
Sbjct: 124 YLGSKGNLYKNKTVLIEAIHVSKADKIKSDKLT 156
>1wys_A Riken cDNA 2310008M20 protein; ZF-AN1 domain, zinc binding, NPPSFA,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus musculus}
Length = 75
Score = 30.0 bits (67), Expect = 0.59
Identities = 10/33 (30%), Positives = 11/33 (33%), Gaps = 9/33 (27%)
Query: 301 PYQCDICRKTFIRKEDLTRHCLLHTGVKPHKCP 333
P+ CD C F CL H H C
Sbjct: 29 PFVCDGCSGIF---------CLEHRSKDSHGCS 52
>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human
papillomavirus, HPV E6 protein, de novo protein; NMR
{Synthetic} SCOP: k.12.1.1
Length = 33
Score = 28.0 bits (62), Expect = 1.0
Identities = 7/27 (25%), Positives = 14/27 (51%)
Query: 77 VCGRVFNRKDNLREHLRAHAGETKRKK 103
C + F R D+L +H+ H + ++
Sbjct: 7 ECPKRFMRSDHLSKHITLHELLGEERR 33
Score = 28.0 bits (62), Expect = 1.0
Identities = 7/27 (25%), Positives = 14/27 (51%)
Query: 165 VCGRVFNRKDNLREHLRAHAGETKRKK 191
C + F R D+L +H+ H + ++
Sbjct: 7 ECPKRFMRSDHLSKHITLHELLGEERR 33
Score = 27.2 bits (60), Expect = 2.1
Identities = 9/30 (30%), Positives = 16/30 (53%)
Query: 302 YQCDICRKTFIRKEDLTRHCLLHTGVKPHK 331
+ C C K F+R + L++H LH + +
Sbjct: 3 FACPECPKRFMRSDHLSKHITLHELLGEER 32
Score = 25.6 bits (56), Expect = 7.9
Identities = 8/28 (28%), Positives = 10/28 (35%)
Query: 132 YECDICKNRFPSSGAMKKHRRKHTGERP 159
+ C C RF S + KH H
Sbjct: 3 FACPECPKRFMRSDHLSKHITLHELLGE 30
>3iyl_X VP3; non-enveloped virus, membrane penetration protein, autocleav
myristol group, icosahedral virus; HET: MYR; 3.30A
{Grass carp reovirus} PDB: 3k1q_C 3k1q_B
Length = 1214
Score = 31.3 bits (70), Expect = 1.5
Identities = 12/31 (38%), Positives = 13/31 (41%)
Query: 360 CEVCGRAFIRQDCLIRHLRQKHRSHLDEVLA 390
C VC F L HLR HR +LA
Sbjct: 119 CNVCNARFSTMSALSEHLRSDHRDDASTLLA 149
Score = 30.6 bits (68), Expect = 2.9
Identities = 9/58 (15%), Positives = 18/58 (31%), Gaps = 1/58 (1%)
Query: 187 TKRKKKFKCDKCEKQFYGLTLLRIHERL-HGLIERTCYARFAAKETLNRHMKTHSGVK 243
+ C+ C +F ++ L H R H T A + + ++
Sbjct: 111 IVNPSSYVCNVCNARFSTMSALSEHLRSDHRDDASTLLATPMINNAIRSFLTAWDDIR 168
>3iz5_T 60S ribosomal protein L19 (L19E); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_T
Length = 209
Score = 30.4 bits (68), Expect = 1.6
Identities = 11/33 (33%), Positives = 15/33 (45%)
Query: 74 YIKVCGRVFNRKDNLREHLRAHAGETKRKKKFK 106
Y+KV G +F K L E + E R+K
Sbjct: 124 YLKVKGNMFKNKRVLMESIHKSKAEKAREKTLS 156
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR
{Xenopus laevis} SCOP: g.37.1.1
Length = 27
Score = 27.4 bits (60), Expect = 1.6
Identities = 9/23 (39%), Positives = 16/23 (69%)
Query: 302 YQCDICRKTFIRKEDLTRHCLLH 324
Y+C +C ++F+ K L+RH +H
Sbjct: 2 YKCGLCERSFVEKSALSRHQRVH 24
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 30.1 bits (67), Expect = 1.8
Identities = 11/53 (20%), Positives = 22/53 (41%), Gaps = 2/53 (3%)
Query: 374 IRHLRQKHRSHLDEVLAQGDKKKLEAQLLAAAATELTSVLEDGEEEGDEGEEN 426
IR R++ R L E+ A + + A +L + E+ ++ + N
Sbjct: 87 IRKWREEQRKRLQELDAASKVME--QEWREKAKKDLEEWNQRQSEQVEKNKIN 137
>2hzq_A Apolipoprotein D, APO-D, APOD; lipocalin, beta barrel,
bilin-binding protein, transport protein; HET: STR;
1.80A {Homo sapiens} PDB: 2hzr_A
Length = 174
Score = 30.0 bits (67), Expect = 2.2
Identities = 10/28 (35%), Positives = 15/28 (53%)
Query: 803 VKHVDNPNRDGRCITAIYYLNRDWDIKV 830
++ + +GRCI A Y L + IKV
Sbjct: 27 IEKIPTTFENGRCIQANYSLMENGKIKV 54
>3jyw_P 60S ribosomal protein L19; eukaryotic ribosome, RACK1 protein,
flexible fitting; 8.90A {Thermomyces lanuginosus}
Length = 176
Score = 29.5 bits (66), Expect = 2.8
Identities = 9/33 (27%), Positives = 11/33 (33%)
Query: 74 YIKVCGRVFNRKDNLREHLRAHAGETKRKKKFK 106
Y + G F K L EH+ A A
Sbjct: 123 YKESKGNAFKHKRALVEHIAAAAAAAAAAAAAA 155
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human
papillomavirus, HPV E6 protein, de novo protein; NMR
{Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Length = 29
Score = 26.4 bits (58), Expect = 3.4
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 302 YQCDICRKTFIRKEDLTRHCLLHTGVK 328
+ C C K F+R + LT H LLH K
Sbjct: 3 FACPECPKRFMRSDHLTLHILLHENKK 29
Score = 25.2 bits (55), Expect = 9.9
Identities = 7/27 (25%), Positives = 11/27 (40%)
Query: 132 YECDICKNRFPSSGAMKKHRRKHTGER 158
+ C C RF S + H H ++
Sbjct: 3 FACPECPKRFMRSDHLTLHILLHENKK 29
>2y9w_A Tyrosinase, polyphenol oxidase; oxidoreductase, copper-containing,
pigmentation, type-3 COPP protein; HET: PGE; 2.30A
{Agaricus bisporus} PDB: 2y9x_A
Length = 391
Score = 30.0 bits (66), Expect = 3.7
Identities = 16/80 (20%), Positives = 29/80 (36%), Gaps = 11/80 (13%)
Query: 572 FHHTNNDRVHSDIMIEKMCHNVIRDMDQYGLCVLDDFLGPERDMHLDTNVVVVPPFHHTN 631
HH N DR+ + + + + + L P + + D+ + PF+ N
Sbjct: 293 MHHCNVDRLLALW---QTMNYDVYVSEGMN-REATMGLIPGQVLTEDSPLE---PFYTKN 345
Query: 632 NDRVHSDMIENVIRDMDQYG 651
D SD + D + G
Sbjct: 346 QDPWQSDD----LEDWETLG 361
>2zkr_p 60S ribosomal protein L19; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 196
Score = 29.2 bits (65), Expect = 4.0
Identities = 13/33 (39%), Positives = 16/33 (48%)
Query: 74 YIKVCGRVFNRKDNLREHLRAHAGETKRKKKFK 106
Y+KV G VF K L EH+ + RKK
Sbjct: 124 YLKVKGNVFKNKRILMEHIHKLKADKARKKLLA 156
>3u5e_R 60S ribosomal protein L19-A; translation, ribosome, ribosomal R
ribosomal protein, STM1, eukaryotic ribosome; 3.00A
{Saccharomyces cerevisiae} PDB: 2wwa_J 2ww9_J 3izc_T
3izs_T 2wwb_J 3o5h_S 3o58_S 3u5i_R 1s1i_P
Length = 189
Score = 28.9 bits (64), Expect = 4.5
Identities = 9/33 (27%), Positives = 14/33 (42%)
Query: 74 YIKVCGRVFNRKDNLREHLRAHAGETKRKKKFK 106
Y + G F K L EH+ + +R+K
Sbjct: 124 YKESKGNAFKHKRALVEHIIQAKADAQREKALN 156
>2k0m_A Uncharacterized protein; structural genomics, unknown function,
PSI-2, protein structure initiative; NMR {Rhodospirillum
rubrum atcc 11170}
Length = 104
Score = 27.9 bits (62), Expect = 4.6
Identities = 8/47 (17%), Positives = 19/47 (40%), Gaps = 1/47 (2%)
Query: 356 PPKSCEVCGRAFIRQDCLIRHLRQK-HRSHLDEVLAQGDKKKLEAQL 401
+ E+ G F R+ + ++ +R ++++ D L L
Sbjct: 3 KAQPIEIAGHEFARKADALAFMKVMLNRYRPGDIVSTVDGAFLVEAL 49
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha,
coiled coil, cytoplasm, metal- binding, UBL conjugation,
UBL conjugation pathway; 2.20A {Homo sapiens}
Length = 170
Score = 28.9 bits (64), Expect = 5.1
Identities = 31/148 (20%), Positives = 49/148 (33%), Gaps = 23/148 (15%)
Query: 246 VCEYCEKAFIQASQLK-AHMF------HHTGENGHTCELCNKTF-------NRKARLELH 291
C C A +A Q H F + GH C + N+ + A+ E+
Sbjct: 20 ECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREIL 79
Query: 292 MKYIHEGADPYQCDICRKTFIRKEDLTRHCLLHTGVKPHKCPICTKGFTMKSSLKIHLLT 351
+ P + + + ED HC CP C + F K + IH+L
Sbjct: 80 SLMVK---CPNEGCLHKMELRHLEDHQAHCE----FALMDCPQCQRPF-QKFHINIHILK 131
Query: 352 HTKEPPKSCEVCGRAFIRQDCLIRHLRQ 379
SC+ C + +D H +
Sbjct: 132 DCPRRQVSCDNCAASMAFED-KEIHDQN 158
>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 26.4 bits (57), Expect = 5.2
Identities = 9/31 (29%), Positives = 15/31 (48%)
Query: 127 HAEKLYECDICKNRFPSSGAMKKHRRKHTGE 157
H K YEC C+ F + +H++ H +
Sbjct: 8 HTRKRYECSKCQATFNLRKHLIQHQKTHAAK 38
>2k5c_A Uncharacterized protein PF0385; structural genomics, PSI-2, protein
structure initiative, northeast structural genomics
consortium, NESG; NMR {Pyrococcus furiosus}
Length = 95
Score = 27.7 bits (61), Expect = 5.2
Identities = 20/68 (29%), Positives = 29/68 (42%), Gaps = 15/68 (22%)
Query: 77 VCGRVFNRKDNLREHLRAHAGETKRKKK-----------FKCDKCEKQFYGLTLLRIHER 125
+CG ++ + E L E K + FKC C ++FYG TL R
Sbjct: 13 ICGSPLKWEELIEEMLIIENFEEIVKDRERFLAQVEEFVFKCPVCGEEFYGKTL----PR 68
Query: 126 LHAEKLYE 133
AEK++E
Sbjct: 69 REAEKVFE 76
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA
repair, ring finger domain, metal binding, DNA
replication; 1.75A {Homo sapiens}
Length = 124
Score = 28.0 bits (62), Expect = 5.7
Identities = 12/79 (15%), Positives = 28/79 (35%), Gaps = 7/79 (8%)
Query: 276 ELCNKTFNRKARLELHMKYIHEGADPYQCDICRKTFIRKEDLT------RHCLLHT-GVK 328
E+ +R A ++ + + +QC C++ R + CL + +
Sbjct: 27 EVLASLKDRPASGSPFQLFLSKVEETFQCICCQELVFRPITTVCQHNVCKDCLDRSFRAQ 86
Query: 329 PHKCPICTKGFTMKSSLKI 347
CP C ++++
Sbjct: 87 VFSCPACRYDLGRSYAMQV 105
>1x4v_A Hypothetical protein LOC130617; ZF-AN1 domain, zinc binding,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 63
Score = 26.2 bits (57), Expect = 10.0
Identities = 7/33 (21%), Positives = 10/33 (30%), Gaps = 9/33 (27%)
Query: 301 PYQCDICRKTFIRKEDLTRHCLLHTGVKPHKCP 333
C+ C + F C+ H H C
Sbjct: 27 KLTCERCSRNF---------CIKHRHPLDHDCS 50
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.136 0.425
Gapped
Lambda K H
0.267 0.0472 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 12,892,930
Number of extensions: 796059
Number of successful extensions: 4647
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3602
Number of HSP's successfully gapped: 1457
Length of query: 831
Length of database: 6,701,793
Length adjustment: 102
Effective length of query: 729
Effective length of database: 3,853,851
Effective search space: 2809457379
Effective search space used: 2809457379
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (27.9 bits)