Query psy11983
Match_columns 66
No_of_seqs 82 out of 84
Neff 3.8
Searched_HMMs 29240
Date Fri Aug 16 15:38:23 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11983.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/11983hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2knc_B Integrin beta-3; transm 72.7 2.1 7E-05 25.7 2.0 44 3-46 24-67 (79)
2 3ba3_A Protein LP_0091, pyrido 47.0 1.5 5E-05 28.5 -2.1 35 11-45 77-114 (145)
3 2ks1_B Epidermal growth factor 44.9 14 0.00048 20.0 2.0 15 2-16 23-37 (44)
4 2l2t_A Receptor tyrosine-prote 44.1 15 0.00051 20.0 2.0 15 2-16 22-36 (44)
5 3mhs_C SAGA-associated factor 41.8 29 0.00098 21.9 3.4 25 25-49 6-30 (99)
6 2kv9_B Integrin beta-3; platel 38.2 8.2 0.00028 23.3 0.4 44 4-47 21-64 (75)
7 3e0h_A Uncharacterized protein 29.2 11 0.00039 22.5 -0.0 26 10-35 96-121 (158)
8 1wzd_A Heme oxygenase; electro 28.9 27 0.00091 23.1 1.8 24 6-31 123-147 (215)
9 1pi7_A VPU protein, U ORF prot 28.5 37 0.0013 17.7 2.0 11 3-13 14-24 (36)
10 3cqx_C BAG family molecular ch 26.5 90 0.0031 19.3 3.8 42 21-65 10-53 (88)
11 1ia6_A Cellulase CEL9M; cellul 22.3 51 0.0017 24.4 2.4 32 6-37 71-102 (441)
No 1
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=72.71 E-value=2.1 Score=25.67 Aligned_cols=44 Identities=16% Similarity=0.288 Sum_probs=33.5
Q ss_pred hHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11983 3 CALLTLITWAYIRYSGEMTDIGIKIDDVANTVWDNRLVKLNQDF 46 (66)
Q Consensus 3 l~L~~L~~WaYiRYSG~~revG~~ID~~A~~lwe~~l~p~~~~~ 46 (66)
+.|+.|++|=+..+-=+-||....=.+-....|+.--+|+|++-
T Consensus 24 iGllllliwk~~~~i~DrrE~~kFEkE~~~~~w~~~~NPlyk~~ 67 (79)
T 2knc_B 24 IGLAALLIWKLLITIHDRKEFAKFEEERARAKWDTANNPLYKEA 67 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCccCC
Confidence 34555677766666666788888888889999999888998865
No 2
>3ba3_A Protein LP_0091, pyridoxamine 5'-phosphate oxidase-like protein; NP_783940.1, structural genomics; HET: MSE; 1.55A {Lactobacillus plantarum WCFS1}
Probab=47.03 E-value=1.5 Score=28.48 Aligned_cols=35 Identities=9% Similarity=0.125 Sum_probs=27.7
Q ss_pred HHHHhhc-cchhhHHHHHHHHHHHHHHH--HHHHHHHH
Q psy11983 11 WAYIRYS-GEMTDIGIKIDDVANTVWDN--RLVKLNQD 45 (66)
Q Consensus 11 WaYiRYS-G~~revG~~ID~~A~~lwe~--~l~p~~~~ 45 (66)
|.|+|.+ |+.+......+++.+.+|+. .++.+|..
T Consensus 77 ~~~IRi~~G~a~~~~~~~~~~k~~~~e~~P~~k~~y~~ 114 (145)
T 3ba3_A 77 NPYLRAQHVKLQRSTKTMTDLLPQYLETVPNYQQVWDA 114 (145)
T ss_dssp CCEEEEEEEEEEECSCCHHHHHHHHHHHSTTHHHHHHH
T ss_pred ceEEEEEeEEEEEcCCchHHHHHHHHHhChhhhhcccC
Confidence 6789999 99988765467899999995 67777754
No 3
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=44.94 E-value=14 Score=20.02 Aligned_cols=15 Identities=13% Similarity=0.031 Sum_probs=11.8
Q ss_pred hhHHHHHHHHHHHhh
Q psy11983 2 GCALLTLITWAYIRY 16 (66)
Q Consensus 2 gl~L~~L~~WaYiRY 16 (66)
+++++++++|-|.|-
T Consensus 23 ~~~ii~~~~~~~~RR 37 (44)
T 2ks1_B 23 LLLVVALGIGLFMRR 37 (44)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhh
Confidence 456788899999985
No 4
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=44.06 E-value=15 Score=20.04 Aligned_cols=15 Identities=20% Similarity=0.204 Sum_probs=12.0
Q ss_pred hhHHHHHHHHHHHhh
Q psy11983 2 GCALLTLITWAYIRY 16 (66)
Q Consensus 2 gl~L~~L~~WaYiRY 16 (66)
+++++++++|-|.|.
T Consensus 22 ~v~ii~~~~~~~~RR 36 (44)
T 2l2t_A 22 ILVIVGLTFAVYVRR 36 (44)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhh
Confidence 456788999999985
No 5
>3mhs_C SAGA-associated factor 11; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3m99_B 3mhh_C 4fjc_C 4fk5_C 4fip_C 2lo2_A 3kjl_E 3kik_E
Probab=41.76 E-value=29 Score=21.94 Aligned_cols=25 Identities=36% Similarity=0.486 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q psy11983 25 IKIDDVANTVWDNRLVKLNQDFKEV 49 (66)
Q Consensus 25 ~~ID~~A~~lwe~~l~p~~~~~~~~ 49 (66)
..||.+++.|.+|.+.-+.+..+..
T Consensus 6 ~t~~~~s~~Iy~nLl~~~i~dIv~~ 30 (99)
T 3mhs_C 6 ITIDSISNGILNNLLTTLIQDIVAR 30 (99)
T ss_dssp CBHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3689999999999999888877753
No 6
>2kv9_B Integrin beta-3; platelet glycoprotein IIIA, GPIIIA, C adhesion; NMR {Homo sapiens}
Probab=38.19 E-value=8.2 Score=23.28 Aligned_cols=44 Identities=11% Similarity=0.187 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11983 4 ALLTLITWAYIRYSGEMTDIGIKIDDVANTVWDNRLVKLNQDFK 47 (66)
Q Consensus 4 ~L~~L~~WaYiRYSG~~revG~~ID~~A~~lwe~~l~p~~~~~~ 47 (66)
.|++|++|=+.=+-=.-||...-=.+-...-|+.--+|+|+.-.
T Consensus 21 ~~~~LliwKll~~i~DrREyaKFEkEr~~akw~~~eNPLYk~at 64 (75)
T 2kv9_B 21 MSPECLIWKLLITIHDRKEFAKFEEERARAKWDTANNPLYKEAT 64 (75)
T ss_dssp -CHHHHHHHHHHHHHHCHHHHHHHHHHHHGGGSSTTSHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccccCCCccCCc
Confidence 46778888666555566888888888888899888889998653
No 7
>3e0h_A Uncharacterized protein; chlorobium tepidum, structural genomics, PSI-2, protein structure initiative; 1.81A {Chlorobaculum tepidum} PDB: 2kcu_A
Probab=29.19 E-value=11 Score=22.47 Aligned_cols=26 Identities=23% Similarity=0.098 Sum_probs=19.9
Q ss_pred HHHHHhhccchhhHHHHHHHHHHHHH
Q psy11983 10 TWAYIRYSGEMTDIGIKIDDVANTVW 35 (66)
Q Consensus 10 ~WaYiRYSG~~revG~~ID~~A~~lw 35 (66)
.||..++.|.+.+++.+.+.+.+++=
T Consensus 96 ~~a~~~~~G~~~~i~~~~~~l~~wl~ 121 (158)
T 3e0h_A 96 KAASSLYIGPYGEIEAVYDALMKWVD 121 (158)
T ss_dssp EEEEEEEESCGGGTHHHHHHHHHHHH
T ss_pred EEEEEEEEcCcccHHHHHHHHHHHHH
Confidence 36778999999998888777765543
No 8
>1wzd_A Heme oxygenase; electron-transfer, artificial metalloprotein; HET: YOK; 1.35A {Corynebacterium diphtheriae} SCOP: a.132.1.1 PDB: 1iw1_A* 1v8x_A* 1iw0_A* 1wzf_A* 1wzg_A* 2z68_A* 3i8r_A* 3moo_A* 1wnw_A* 1wnx_A* 1wnv_A*
Probab=28.92 E-value=27 Score=23.05 Aligned_cols=24 Identities=25% Similarity=0.598 Sum_probs=17.0
Q ss_pred HHHHHHHHHhhccchhhHHHHH-HHHH
Q psy11983 6 LTLITWAYIRYSGEMTDIGIKI-DDVA 31 (66)
Q Consensus 6 ~~L~~WaYiRYSG~~revG~~I-D~~A 31 (66)
..++-|+|+||-|.. .|+.+ -..+
T Consensus 123 ~~~lg~~Yv~YeG~~--~GGq~i~~~~ 147 (215)
T 1wzd_A 123 PALVAHHYVRYLGDL--SGGQVIARMM 147 (215)
T ss_dssp HHHHHHHHHHHHHHH--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH--hhHHHHHHHH
Confidence 357789999999999 46553 4433
No 9
>1pi7_A VPU protein, U ORF protein; alpha helix, viral protein; NMR {Human immunodeficiency virus 1} SCOP: j.35.1.1 PDB: 1pi8_A 1pje_A 2gof_A 2goh_A 2jpx_A
Probab=28.50 E-value=37 Score=17.71 Aligned_cols=11 Identities=9% Similarity=0.800 Sum_probs=8.2
Q ss_pred hHHHHHHHHHH
Q psy11983 3 CALLTLITWAY 13 (66)
Q Consensus 3 l~L~~L~~WaY 13 (66)
.++++..+|..
T Consensus 14 alIiaIVVWti 24 (36)
T 1pi7_A 14 AIIIAIVVWSI 24 (36)
T ss_pred HHHHHHHHHHH
Confidence 45778889983
No 10
>3cqx_C BAG family molecular chaperone regulator 2; protein-protein complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; 2.30A {Mus musculus} PDB: 3d0t_A
Probab=26.47 E-value=90 Score=19.29 Aligned_cols=42 Identities=17% Similarity=0.117 Sum_probs=26.6
Q ss_pred hhHHHHHHHHHHHHHHHH--HHHHHHHHHhhhhhhhhhhcCCccccc
Q psy11983 21 TDIGIKIDDVANTVWDNR--LVKLNQDFKEVTVRGQVEINDQPVTKK 65 (66)
Q Consensus 21 revG~~ID~~A~~lwe~~--l~p~~~~~~~~~~~~~~~~~~~~~~~~ 65 (66)
..+-..||++...+.+.. -+...+.+++.-...... -|+|||
T Consensus 10 ~~vn~lID~~v~k~~~D~~~ar~~c~~ylnACss~~~~---gp~Dqk 53 (88)
T 3cqx_C 10 KHATRIIDEVVSKFLDDLGNAKSHLMSLYSACSSEVPP---GPVDQK 53 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCCS---SCCCHH
T ss_pred HHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhcCCCCCC---CchhHH
Confidence 456788999999988873 344555666555544332 366665
No 11
>1ia6_A Cellulase CEL9M; cellullase, alpha barrel, hydrolase; 1.80A {Clostridium cellulolyticum} SCOP: a.102.1.2 PDB: 1ia7_A*
Probab=22.25 E-value=51 Score=24.42 Aligned_cols=32 Identities=6% Similarity=0.256 Sum_probs=25.5
Q ss_pred HHHHHHHHHhhccchhhHHHHHHHHHHHHHHH
Q psy11983 6 LTLITWAYIRYSGEMTDIGIKIDDVANTVWDN 37 (66)
Q Consensus 6 ~~L~~WaYiRYSG~~revG~~ID~~A~~lwe~ 37 (66)
++++.|+|+.|...+.+-|+.=|-+-+.-|+-
T Consensus 71 ~~~L~w~~~e~~~~~~~~g~~~d~ldeikwg~ 102 (441)
T 1ia6_A 71 AAILGWSLYEFKESFDATGNTTKMLQQLKYFT 102 (441)
T ss_dssp HHHHHHHHHHCHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHhhcCcHHHHHHHHHHHH
Confidence 57889999999888887777767777777765
Done!