Query psy11983
Match_columns 66
No_of_seqs 82 out of 84
Neff 3.8
Searched_HMMs 13730
Date Fri Aug 16 15:38:28 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11983.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/11983hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ppjj_ f.23.14.1 (J:) Subunit 52.1 4.3 0.00031 20.1 1.9 16 24-39 3-18 (33)
2 d1wyua1 c.67.1.7 (A:1-437) Gly 43.3 12 0.00086 26.3 3.8 37 3-39 323-361 (437)
3 d1y2oa1 a.238.1.3 (A:1-248) BA 43.1 11 0.0008 23.2 3.3 34 13-46 76-109 (248)
4 d2gena2 a.121.1.1 (A:76-193) P 39.6 17 0.0012 19.3 3.4 33 5-37 81-114 (118)
5 d1v7wa1 a.102.1.4 (A:271-801) 38.4 1.3 9.5E-05 29.4 -1.9 34 5-38 160-196 (531)
6 d2pcsa1 d.129.3.10 (A:1-147) H 36.3 22 0.0016 19.0 3.6 31 16-46 113-144 (147)
7 d1ivza_ d.58.41.1 (A:) SEA dom 25.4 15 0.0011 22.7 1.7 32 15-46 24-55 (132)
8 d1qtma1 c.55.3.5 (A:293-422) E 23.0 29 0.0021 21.4 2.6 27 14-40 100-126 (130)
9 d1ppjw_ f.23.14.1 (W:) Subunit 22.9 56 0.0041 17.5 3.8 17 23-39 31-47 (62)
10 d1h54a1 a.102.1.4 (A:269-753) 20.4 60 0.0044 21.3 4.1 33 5-38 163-199 (485)
11 d1d5ya3 d.60.1.2 (A:122-294) R 20.4 48 0.0035 18.9 3.2 27 15-41 23-49 (173)
No 1
>d1ppjj_ f.23.14.1 (J:) Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Cow (Bos taurus) [TaxId: 9913]}
Probab=52.05 E-value=4.3 Score=20.07 Aligned_cols=16 Identities=13% Similarity=0.223 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHH
Q psy11983 24 GIKIDDVANTVWDNRL 39 (66)
Q Consensus 24 G~~ID~~A~~lwe~~l 39 (66)
-.+.|+.++.+||+..
T Consensus 3 ErafD~~~d~i~d~~N 18 (33)
T d1ppjj_ 3 ERAFDQGADAIYEHIN 18 (33)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHhhhHHHHHHHhc
Confidence 3578999999999863
No 2
>d1wyua1 c.67.1.7 (A:1-437) Glycine dehydrogenase (decarboxylating) subunit 1 {Thermus thermophilus [TaxId: 274]}
Probab=43.33 E-value=12 Score=26.27 Aligned_cols=37 Identities=19% Similarity=0.307 Sum_probs=31.1
Q ss_pred hHHHHHHHHHHHhhcc--chhhHHHHHHHHHHHHHHHHH
Q psy11983 3 CALLTLITWAYIRYSG--EMTDIGIKIDDVANTVWDNRL 39 (66)
Q Consensus 3 l~L~~L~~WaYiRYSG--~~revG~~ID~~A~~lwe~~l 39 (66)
-+|+++..|+|++|=| -+|+++..+=.-|+.+-+++.
T Consensus 323 q~l~a~~a~~Y~~~lG~~GL~~ia~~a~~~A~yl~~~L~ 361 (437)
T d1wyua1 323 AQLTALMGAMYLAALGPEGLREVALKSVEMAHKLHALLL 361 (437)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHHHHHHhh
Confidence 3688999999999999 589999888888888777654
No 3
>d1y2oa1 a.238.1.3 (A:1-248) BAP2/IRSp53 N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=43.06 E-value=11 Score=23.21 Aligned_cols=34 Identities=12% Similarity=0.262 Sum_probs=23.7
Q ss_pred HHhhccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11983 13 YIRYSGEMTDIGIKIDDVANTVWDNRLVKLNQDF 46 (66)
Q Consensus 13 YiRYSG~~revG~~ID~~A~~lwe~~l~p~~~~~ 46 (66)
..++++-++++....|...+.+=++++.|+-+.+
T Consensus 76 L~~~~~~~~~i~~~~~~l~~~~~~~~i~PL~~~~ 109 (248)
T d1y2oa1 76 LFQMAEVHRQIQNQLEEMLKSFHNELLTQLEQKV 109 (248)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666677777777777777777888877654
No 4
>d2gena2 a.121.1.1 (A:76-193) Probable transcriptional regulator PA1836 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=39.61 E-value=17 Score=19.29 Aligned_cols=33 Identities=15% Similarity=0.167 Sum_probs=21.9
Q ss_pred HHHHHHHHHHhhccchh-hHHHHHHHHHHHHHHH
Q psy11983 5 LLTLITWAYIRYSGEMT-DIGIKIDDVANTVWDN 37 (66)
Q Consensus 5 L~~L~~WaYiRYSG~~r-evG~~ID~~A~~lwe~ 37 (66)
+.++.-|+.--+.|..+ +.-..+|.+++.+|+-
T Consensus 81 ~G~~~~~~~~wl~~~~~~~~e~~~e~l~~~~w~~ 114 (118)
T d2gena2 81 IGPAHDLARQWLAGRTRVALADCRELLAQVAWDS 114 (118)
T ss_dssp HHHHHHHHHHHHTTCCSSCGGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHH
Confidence 34444455555566653 4777889999999964
No 5
>d1v7wa1 a.102.1.4 (A:271-801) Chitobiose phosphorylase ChbP {Vibrio proteolyticus [TaxId: 671]}
Probab=38.42 E-value=1.3 Score=29.40 Aligned_cols=34 Identities=18% Similarity=0.224 Sum_probs=23.4
Q ss_pred HHHHHHHHHHhhccchh---hHHHHHHHHHHHHHHHH
Q psy11983 5 LLTLITWAYIRYSGEMT---DIGIKIDDVANTVWDNR 38 (66)
Q Consensus 5 L~~L~~WaYiRYSG~~r---evG~~ID~~A~~lwe~~ 38 (66)
.++.++|-|.++||... |++..+....+.+|++.
T Consensus 160 ~i~~a~~~Y~~~TgD~~~l~e~~~~~~~~~~~~~~~~ 196 (531)
T d1v7wa1 160 WLIPTICKYVMETGETSFFDQMIPYADGGEASVYEHM 196 (531)
T ss_dssp GHHHHHHHHHHHHCCGGGGGCEEECTTSCEEEHHHHH
T ss_pred HHHHHHHHHHHhhCCHHHHHHhhhHHHHHHHHHHHHH
Confidence 47789999999999854 44444444455567654
No 6
>d2pcsa1 d.129.3.10 (A:1-147) Hypothetical protein GKP20 {Geobacillus kaustophilus [TaxId: 1462]}
Probab=36.33 E-value=22 Score=19.03 Aligned_cols=31 Identities=19% Similarity=0.386 Sum_probs=21.9
Q ss_pred hccchhhHH-HHHHHHHHHHHHHHHHHHHHHH
Q psy11983 16 YSGEMTDIG-IKIDDVANTVWDNRLVKLNQDF 46 (66)
Q Consensus 16 YSG~~revG-~~ID~~A~~lwe~~l~p~~~~~ 46 (66)
++|-+..+| ..|+.+++.+.+++++.+-+.+
T Consensus 113 ~~g~l~~l~~~li~~~~~~~~~~f~~~~~~~l 144 (147)
T d2pcsa1 113 VGGKVAAIGQRMLGGVAKLLISDFFKKIQKEI 144 (147)
T ss_dssp EESGGGGGCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455666664 5788899888888887665544
No 7
>d1ivza_ d.58.41.1 (A:) SEA domain from the hypothetical protein homologous to mucin 16 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=25.40 E-value=15 Score=22.70 Aligned_cols=32 Identities=16% Similarity=0.169 Sum_probs=28.4
Q ss_pred hhccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11983 15 RYSGEMTDIGIKIDDVANTVWDNRLVKLNQDF 46 (66)
Q Consensus 15 RYSG~~revG~~ID~~A~~lwe~~l~p~~~~~ 46 (66)
.||=+|..=|...-+..|.+.+..++|+++..
T Consensus 24 ~Yt~dM~~pgS~kFn~TervLq~lL~~LF~ns 55 (132)
T d1ivza_ 24 PYSQDIAQPSTTKYQQTKRSIENALNQLFRNS 55 (132)
T ss_dssp CCCHHHHCTTSHHHHHHHHHHHHHHHHHHHHS
T ss_pred cccCCCCCCCchHHHHHHHHHHHHHHHHhccC
Confidence 57888888899999999999999999999864
No 8
>d1qtma1 c.55.3.5 (A:293-422) Exonuclease domain of prokaryotic DNA polymerase {Thermus aquaticus [TaxId: 271]}
Probab=22.98 E-value=29 Score=21.36 Aligned_cols=27 Identities=22% Similarity=0.282 Sum_probs=22.8
Q ss_pred HhhccchhhHHHHHHHHHHHHHHHHHH
Q psy11983 14 IRYSGEMTDIGIKIDDVANTVWDNRLV 40 (66)
Q Consensus 14 iRYSG~~revG~~ID~~A~~lwe~~l~ 40 (66)
-||-|++.|=...=-.+++.+|+....
T Consensus 100 rRYggew~eDa~~RA~~~~rL~~~L~~ 126 (130)
T d1qtma1 100 RRYGGEWTEEAGERAALSERLFANLWG 126 (130)
T ss_dssp HHHTCCCCSCHHHHHHHHHHHHHHHHH
T ss_pred HhcCCCCCccHHHHHHHHHHHHHHHHH
Confidence 389999999888888999999988653
No 9
>d1ppjw_ f.23.14.1 (W:) Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Cow (Bos taurus) [TaxId: 9913]}
Probab=22.86 E-value=56 Score=17.51 Aligned_cols=17 Identities=12% Similarity=0.229 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy11983 23 IGIKIDDVANTVWDNRL 39 (66)
Q Consensus 23 vG~~ID~~A~~lwe~~l 39 (66)
.-..+|..++.+||+..
T Consensus 31 fE~~fD~~~d~iwe~~N 47 (62)
T d1ppjw_ 31 FERAFDQGADAIYEHIN 47 (62)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhcc
Confidence 44679999999999863
No 10
>d1h54a1 a.102.1.4 (A:269-753) Lactobacillus maltose phosphorylase, central domain {Lactobacillus brevis [TaxId: 1580]}
Probab=20.41 E-value=60 Score=21.26 Aligned_cols=33 Identities=18% Similarity=0.564 Sum_probs=22.9
Q ss_pred HHHHHHHHHHhhccchh---hH-HHHHHHHHHHHHHHH
Q psy11983 5 LLTLITWAYIRYSGEMT---DI-GIKIDDVANTVWDNR 38 (66)
Q Consensus 5 L~~L~~WaYiRYSG~~r---ev-G~~ID~~A~~lwe~~ 38 (66)
-++..+|-|.||||... |- --.+-+.|++ |+++
T Consensus 163 wi~~~~~~yy~~TgD~~~L~e~~~pll~e~a~F-~~~~ 199 (485)
T d1h54a1 163 DIAFAIYNYTRYTGDDSYVLHEGAKVLTEISRF-WADR 199 (485)
T ss_dssp HHHHHHHHHHHHHCCCTTTTTHHHHHHHHHHHH-HHHH
T ss_pred HHHHHHHHHHHhcCcHHHHHhcccHHHHHHHHH-HHhh
Confidence 36778999999999864 32 4566676666 4443
No 11
>d1d5ya3 d.60.1.2 (A:122-294) Rob transcription factor, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=20.38 E-value=48 Score=18.89 Aligned_cols=27 Identities=19% Similarity=0.303 Sum_probs=20.1
Q ss_pred hhccchhhHHHHHHHHHHHHHHHHHHH
Q psy11983 15 RYSGEMTDIGIKIDDVANTVWDNRLVK 41 (66)
Q Consensus 15 RYSG~~revG~~ID~~A~~lwe~~l~p 41 (66)
||+-+..+++...+++-+.+|.++++.
T Consensus 23 ~~~~~~e~~~~~~~~~~~~~W~~f~~~ 49 (173)
T d1d5ya3 23 SYSCSLEQISDFRHEMRYQFWHDFLGN 49 (173)
T ss_dssp ECCCCGGGHHHHHHHHHHHHHHHHHHH
T ss_pred EecCchHHhhHHHHHHHHHHHHHHHhh
Confidence 444556788888888888889887753
Done!