RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy11983
         (66 letters)



>3mhs_C SAGA-associated factor 11; multi-protein complex,
          hydrolase-transcription regulator-Pro binding complex,
          acetylation, cytoplasm; 1.89A {Saccharomyces
          cerevisiae} PDB: 3m99_B 3mhh_C 2lo2_A 3kjl_E 3kik_E
          Length = 99

 Score = 27.0 bits (59), Expect = 0.30
 Identities = 12/46 (26%), Positives = 20/46 (43%)

Query: 20 MTDIGIKIDDVANTVWDNRLVKLNQDFKEVTVRGQVEINDQPVTKK 65
          MT+  I ID ++N + +N L  L QD        Q  +  +    +
Sbjct: 1  MTEETITIDSISNGILNNLLTTLIQDIVARETTQQQLLKTRYPDLR 46


>2yik_A Endoglucanase; hydrolase; 2.10A {Clostridium thermocellum}
          Length = 611

 Score = 25.0 bits (54), Expect = 1.8
 Identities = 3/30 (10%), Positives = 9/30 (30%)

Query: 6   LTLITWAYIRYSGEMTDIGIKIDDVANTVW 35
            + + W Y  +  +    G  +       +
Sbjct: 131 ASTVGWGYYEFKDQFRATGQAVHAEVILRY 160


>3kta_A Chromosome segregation protein SMC; structural maintenance of
           chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A,
           transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB:
           1xex_A* 1xew_X*
          Length = 182

 Score = 23.3 bits (51), Expect = 7.4
 Identities = 8/40 (20%), Positives = 15/40 (37%), Gaps = 8/40 (20%)

Query: 34  VWDNRLVKLNQDFKEVTVR------GQVE--INDQPVTKK 65
            ++N       D  EV +R      G+    +N +  T+ 
Sbjct: 85  YFNNEDRGFPIDEDEVVIRRRVYPDGRSSYWLNGRRATRS 124


>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain
            cytoplasmic; motor protein, AAA+ protein, ASCE protein,
            P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma
            japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
          Length = 2695

 Score = 23.3 bits (50), Expect = 9.2
 Identities = 10/33 (30%), Positives = 13/33 (39%), Gaps = 4/33 (12%)

Query: 9    ITWAYIRYSGEMTDIGIKIDDVANTVWDNRLVK 41
            I WA +R        G KID+      D  +V 
Sbjct: 2583 IPWAQVRDHIATIVYGGKIDE----EKDLEVVA 2611


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.320    0.137    0.412 

Gapped
Lambda     K      H
   0.267   0.0625    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 993,185
Number of extensions: 44176
Number of successful extensions: 154
Number of sequences better than 10.0: 1
Number of HSP's gapped: 154
Number of HSP's successfully gapped: 4
Length of query: 66
Length of database: 6,701,793
Length adjustment: 37
Effective length of query: 29
Effective length of database: 5,668,716
Effective search space: 164392764
Effective search space used: 164392764
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.6 bits)