BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11985
(334 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RB7|A Chain A, Crystal Structure Of Cbd12 From Calx1.2
pdb|3RB7|B Chain B, Crystal Structure Of Cbd12 From Calx1.2
pdb|3RB7|E Chain E, Crystal Structure Of Cbd12 From Calx1.2
pdb|3RB7|G Chain G, Crystal Structure Of Cbd12 From Calx1.2
Length = 298
Score = 148 bits (374), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 91/236 (38%), Positives = 117/236 (49%), Gaps = 55/236 (23%)
Query: 94 RIFFKPQYYTVLENVGEFEVVVAREGDVSGTVTVEYATEDGTAQAGSDYVGAAGKIVFQP 153
R++F+P +YTV+EN GEFEV V R GD+S +VEY T+DGTA AG+D+VG G + F P
Sbjct: 11 RMYFEPGHYTVMENCGEFEVRVVRRGDISTYASVEYETQDGTASAGTDFVGRKGLLSFPP 70
Query: 154 GELEQRIRLQXXXXXXXXXXXXXXXHLTKVKDAKLVAPSSATVMILDDDHAGSFGFLETS 213
G EQR R++ ++DDD
Sbjct: 71 GVDEQRFRIE----------------------------------VIDDD----------- 85
Query: 214 VTIAESVGIVKELWSTRHGVVHLTKVKDAKLVAPSSATVMILDDDHAGSFGFLETSVTIA 273
E L++ GV KL P ATVMILDDDHAG F F ++ I
Sbjct: 86 -VFEEDECFYIRLFNPSEGV---------KLAVPMIATVMILDDDHAGIFAFTDSVFEIT 135
Query: 274 ESVGMYELEVLRSCGARGTVEVGYKTYDDTAKAGTHYVQTEGALIFHNEETSYFYN 329
ESVG +EL+V+R GARGTV V Y T +DTA Y G L+F N E+ F +
Sbjct: 136 ESVGRFELKVMRYSGARGTVIVPYWTENDTATESKDYEGARGELVFENNESEKFID 191
Score = 51.2 bits (121), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 93 ARIF-FKPQYYTVLENVGEFEVVVAREGDVSGTVTVEYATEDGTAQAGSDYVGAAGKIVF 151
A IF F + + E+VG FE+ V R GTV V Y TE+ TA DY GA G++VF
Sbjct: 122 AGIFAFTDSVFEITESVGRFELKVMRYSGARGTVIVPYWTENDTATESKDYEGARGELVF 181
Query: 152 QPGELEQRIRL 162
+ E E+ I L
Sbjct: 182 ENNESEKFIDL 192
>pdb|3RB5|A Chain A, Crystal Structure Of Calcium Binding Domain Cbd12 Of
Calx1.1
pdb|3RB5|B Chain B, Crystal Structure Of Calcium Binding Domain Cbd12 Of
Calx1.1
Length = 298
Score = 148 bits (374), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 91/236 (38%), Positives = 117/236 (49%), Gaps = 55/236 (23%)
Query: 94 RIFFKPQYYTVLENVGEFEVVVAREGDVSGTVTVEYATEDGTAQAGSDYVGAAGKIVFQP 153
R++F+P +YTV+EN GEFEV V R GD+S +VEY T+DGTA AG+D+VG G + F P
Sbjct: 11 RMYFEPGHYTVMENCGEFEVRVVRRGDISTYASVEYETQDGTASAGTDFVGRKGLLSFPP 70
Query: 154 GELEQRIRLQXXXXXXXXXXXXXXXHLTKVKDAKLVAPSSATVMILDDDHAGSFGFLETS 213
G EQR R++ ++DDD
Sbjct: 71 GVDEQRFRIE----------------------------------VIDDD----------- 85
Query: 214 VTIAESVGIVKELWSTRHGVVHLTKVKDAKLVAPSSATVMILDDDHAGSFGFLETSVTIA 273
E L++ GV KL P ATVMILDDDHAG F F ++ I
Sbjct: 86 -VFEEDECFYIRLFNPSEGV---------KLAVPMIATVMILDDDHAGIFAFTDSVFEIT 135
Query: 274 ESVGMYELEVLRSCGARGTVEVGYKTYDDTAKAGTHYVQTEGALIFHNEETSYFYN 329
ESVG +EL+V+R GARGTV V Y T +DTA Y G L+F N E+ F +
Sbjct: 136 ESVGRFELKVMRYSGARGTVIVPYWTENDTATESKDYEGARGELVFENNESEKFID 191
Score = 51.2 bits (121), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 93 ARIF-FKPQYYTVLENVGEFEVVVAREGDVSGTVTVEYATEDGTAQAGSDYVGAAGKIVF 151
A IF F + + E+VG FE+ V R GTV V Y TE+ TA DY GA G++VF
Sbjct: 122 AGIFAFTDSVFEITESVGRFELKVMRYSGARGTVIVPYWTENDTATESKDYEGARGELVF 181
Query: 152 QPGELEQRIRL 162
+ E E+ I L
Sbjct: 182 ENNESEKFIDL 192
>pdb|3US9|A Chain A, Crystal Structure Of The Ncx1 Intracellular Tandem Calcium
Binding Domains(Cbd12)
Length = 295
Score = 126 bits (316), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 83/233 (35%), Positives = 118/233 (50%), Gaps = 40/233 (17%)
Query: 93 ARIFFKPQYYTVLENVGEFEV-VVAREGDVSGTVTVEYATEDGTAQAGSDYVGAAGKIVF 151
++IFF+ Y LEN G + ++ R GD++ TV V++ TEDGTA AGSDY G +VF
Sbjct: 10 SKIFFEQGTYQCLENCGTVALTIIRRGGDLTNTVFVDFRTEDGTANAGSDYEFTEGTVVF 69
Query: 152 QPGELEQRIRLQXXXXXXXXXXXXXXXHLTKVKDAKLVAPSSATVMILDDDHAGSFGFLE 211
+PGE ++ IR+ HL+ VK V+ ++ IL+ +H +
Sbjct: 70 KPGETQKEIRVGIIDDDIFEEDKNFLVHLSNVK----VSSEASEDGILEANHVSAL---- 121
Query: 212 TSVTIAESVGIVKELWSTRHGVVHLTKVKDAKLVAPSSATVMILDDDHAGSFGFLETSVT 271
A L +PS+ATV I DDDHAG F F E
Sbjct: 122 ------------------------------ACLGSPSTATVTIFDDDHAGIFTFEEPVTH 151
Query: 272 IAESVGMYELEVLRSCGARGTVEVGYKTYDDTAK-AGTHYVQTEGALIFHNEE 323
++ES+G+ E++VLR+ GARG V V YKT + TA+ G + T G L F N+E
Sbjct: 152 VSESIGIMEVKVLRTSGARGNVIVPYKTIEGTARGGGEDFEDTCGELEFQNDE 204
Score = 35.0 bits (79), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 38/73 (52%), Gaps = 2/73 (2%)
Query: 93 ARIF-FKPQYYTVLENVGEFEVVVAREGDVSGTVTVEYATEDGTAQ-AGSDYVGAAGKIV 150
A IF F+ V E++G EV V R G V V Y T +GTA+ G D+ G++
Sbjct: 140 AGIFTFEEPVTHVSESIGIMEVKVLRTSGARGNVIVPYKTIEGTARGGGEDFEDTCGELE 199
Query: 151 FQPGELEQRIRLQ 163
FQ E+ + I ++
Sbjct: 200 FQNDEIVKTISVK 212
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 274 ESVGMYELEVLRSCG-ARGTVEVGYKTYDDTAKAGTHYVQTEGALIFHNEET 324
E+ G L ++R G TV V ++T D TA AG+ Y TEG ++F ET
Sbjct: 23 ENCGTVALTIIRRGGDLTNTVFVDFRTEDGTANAGSDYEFTEGTVVFKPGET 74
>pdb|3EAD|A Chain A, Crystal Structure Of Calx-Cbd1
pdb|3EAD|B Chain B, Crystal Structure Of Calx-Cbd1
pdb|3EAD|C Chain C, Crystal Structure Of Calx-Cbd1
pdb|3EAD|D Chain D, Crystal Structure Of Calx-Cbd1
Length = 137
Score = 117 bits (293), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 62/129 (48%), Positives = 78/129 (60%), Gaps = 1/129 (0%)
Query: 94 RIFFKPQYYTVLENVGEFEVVVAREGDVSGTVTVEYATEDGTAQAGSDYVGAAGKIVFQP 153
R++F+P +YTV+EN GEFEV V R GD+S +VEY T+DGTA AG+D+VG G + F P
Sbjct: 6 RMYFEPGHYTVMENCGEFEVRVVRRGDISTYASVEYETQDGTASAGTDFVGRKGLLSFPP 65
Query: 154 GELEQRIRLQXXXXXXXXXXXXXXXHLTKVKDA-KLVAPSSATVMILDDDHAGSFGFLET 212
G EQR R++ L + KL P ATVMILDDDHAG F F ++
Sbjct: 66 GVDEQRFRIEVIDDDVFEEDECFYIRLFNPSEGVKLAVPMIATVMILDDDHAGIFAFTDS 125
Query: 213 SVTIAESVG 221
I ESVG
Sbjct: 126 VFEITESVG 134
Score = 34.7 bits (78), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 27/49 (55%)
Query: 271 TIAESVGMYELEVLRSCGARGTVEVGYKTYDDTAKAGTHYVQTEGALIF 319
T+ E+ G +E+ V+R V Y+T D TA AGT +V +G L F
Sbjct: 15 TVMENCGEFEVRVVRRGDISTYASVEYETQDGTASAGTDFVGRKGLLSF 63
>pdb|3E9T|A Chain A, Crystal Structure Of Apo-Form Calx Cbd1 Domain
pdb|3E9T|B Chain B, Crystal Structure Of Apo-Form Calx Cbd1 Domain
pdb|3E9T|C Chain C, Crystal Structure Of Apo-Form Calx Cbd1 Domain
pdb|3E9T|D Chain D, Crystal Structure Of Apo-Form Calx Cbd1 Domain
Length = 114
Score = 102 bits (253), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 53/111 (47%), Positives = 67/111 (60%), Gaps = 1/111 (0%)
Query: 94 RIFFKPQYYTVLENVGEFEVVVAREGDVSGTVTVEYATEDGTAQAGSDYVGAAGKIVFQP 153
R++F+P +YTV+EN GEFEV V R GD+S +VEY T+DGTA AG+D+VG G + F P
Sbjct: 4 RMYFEPGHYTVMENCGEFEVRVVRRGDISTYASVEYETQDGTASAGTDFVGRKGLLSFPP 63
Query: 154 GELEQRIRLQXXXXXXXXXXXXXXXHLTKVKDA-KLVAPSSATVMILDDDH 203
G EQR R++ L + KL P ATVMILDDDH
Sbjct: 64 GVDEQRFRIEVIDDDVFEEDECFYIRLFNPSEGVKLAVPMIATVMILDDDH 114
Score = 34.7 bits (78), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 27/49 (55%)
Query: 271 TIAESVGMYELEVLRSCGARGTVEVGYKTYDDTAKAGTHYVQTEGALIF 319
T+ E+ G +E+ V+R V Y+T D TA AGT +V +G L F
Sbjct: 13 TVMENCGEFEVRVVRRGDISTYASVEYETQDGTASAGTDFVGRKGLLSF 61
>pdb|2DPK|A Chain A, The Crystal Structure Of The Primary Ca2+ Sensor Of The
Na+CA2+ EXCHANGER
Length = 152
Score = 90.5 bits (223), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 55/142 (38%), Positives = 74/142 (52%), Gaps = 19/142 (13%)
Query: 89 GLTGARIFFKPQYYTVLENVGEFEV-VVAREGDVSGTVTVEYATEDGTAQAGSDYVGAAG 147
G+ ++IFF+ Y LEN G + ++ R GD++ TV V++ TEDGTA AGSDY G
Sbjct: 11 GIPVSKIFFEQGTYQCLENCGTVALTIIRRGGDLTNTVFVDFRTEDGTANAGSDYEFTEG 70
Query: 148 KIVFQPGELEQRIRLQXXXXXXXXXXXXXXXHLTKVKD------------------AKLV 189
+VF+PGE ++ IR+ HL+ VK A L
Sbjct: 71 TVVFKPGETQKEIRVGIIDDDIFEEDENFLVHLSNVKVSSEASEDGILEANHVSALACLG 130
Query: 190 APSSATVMILDDDHAGSFGFLE 211
+PS+ATV I DDDHAG F F E
Sbjct: 131 SPSTATVTIFDDDHAGIFTFEE 152
Score = 34.3 bits (77), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 274 ESVGMYELEVLRSCG-ARGTVEVGYKTYDDTAKAGTHYVQTEGALIFHNEET 324
E+ G L ++R G TV V ++T D TA AG+ Y TEG ++F ET
Sbjct: 28 ENCGTVALTIIRRGGDLTNTVFVDFRTEDGTANAGSDYEFTEGTVVFKPGET 79
>pdb|2FWS|A Chain A, First Ca2+ Binding Domain Of The Na,Ca-Exchanger (Ncx1)
Length = 139
Score = 89.7 bits (221), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 54/138 (39%), Positives = 72/138 (52%), Gaps = 19/138 (13%)
Query: 93 ARIFFKPQYYTVLENVGEFEV-VVAREGDVSGTVTVEYATEDGTAQAGSDYVGAAGKIVF 151
++IFF+ Y LEN G + ++ R GD++ TV V++ TEDGTA AGSDY G +VF
Sbjct: 2 SKIFFEQGTYQCLENCGTVALTIIRRGGDLTNTVFVDFRTEDGTANAGSDYEFTEGTVVF 61
Query: 152 QPGELEQRIRLQXXXXXXXXXXXXXXXHLTKVKD------------------AKLVAPSS 193
+PGE ++ IR+ HL+ VK A L +PS+
Sbjct: 62 KPGETQKEIRVGIIDDDIFEEDENFLVHLSNVKVSSEASEDGILEANHVSALACLGSPST 121
Query: 194 ATVMILDDDHAGSFGFLE 211
ATV I DDDHAG F F E
Sbjct: 122 ATVTIFDDDHAGIFTFEE 139
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 274 ESVGMYELEVLRSCG-ARGTVEVGYKTYDDTAKAGTHYVQTEGALIFHNEET 324
E+ G L ++R G TV V ++T D TA AG+ Y TEG ++F ET
Sbjct: 15 ENCGTVALTIIRRGGDLTNTVFVDFRTEDGTANAGSDYEFTEGTVVFKPGET 66
>pdb|3GIN|A Chain A, Crystal Structure Of E454k-Cbd1
pdb|3GIN|B Chain B, Crystal Structure Of E454k-Cbd1
Length = 160
Score = 89.4 bits (220), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 54/138 (39%), Positives = 72/138 (52%), Gaps = 19/138 (13%)
Query: 93 ARIFFKPQYYTVLENVGEFEV-VVAREGDVSGTVTVEYATEDGTAQAGSDYVGAAGKIVF 151
++IFF+ Y LEN G + ++ R GD++ TV V++ TEDGTA AGSDY G +VF
Sbjct: 23 SKIFFEQGTYQCLENCGTVALTIIRRGGDLTNTVFVDFRTEDGTANAGSDYEFTEGTVVF 82
Query: 152 QPGELEQRIRLQXXXXXXXXXXXXXXXHLTKVKD------------------AKLVAPSS 193
+PGE ++ IR+ HL+ VK A L +PS+
Sbjct: 83 KPGETQKEIRVGIIDDDIFEEDKNFLVHLSNVKVSSEASEDGILEANHVSALACLGSPST 142
Query: 194 ATVMILDDDHAGSFGFLE 211
ATV I DDDHAG F F E
Sbjct: 143 ATVTIFDDDHAGIFTFEE 160
Score = 34.7 bits (78), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 274 ESVGMYELEVLRSCG-ARGTVEVGYKTYDDTAKAGTHYVQTEGALIFHNEET 324
E+ G L ++R G TV V ++T D TA AG+ Y TEG ++F ET
Sbjct: 36 ENCGTVALTIIRRGGDLTNTVFVDFRTEDGTANAGSDYEFTEGTVVFKPGET 87
>pdb|3E9U|A Chain A, Crystal Structure Of Calx Cbd2 Domain
Length = 162
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 40/69 (57%)
Query: 261 GSFGFLETSVTIAESVGMYELEVLRSCGARGTVEVGYKTYDDTAKAGTHYVQTEGALIFH 320
G F F ++ I ESVG +EL+V+R GARGTV V Y T +DTA Y G L+F
Sbjct: 8 GIFAFTDSVFEITESVGRFELKVMRYSGARGTVIVPYWTENDTATESKDYEGARGELVFE 67
Query: 321 NEETSYFYN 329
N E+ F +
Sbjct: 68 NNESEKFID 76
Score = 51.2 bits (121), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 37/66 (56%)
Query: 97 FKPQYYTVLENVGEFEVVVAREGDVSGTVTVEYATEDGTAQAGSDYVGAAGKIVFQPGEL 156
F + + E+VG FE+ V R GTV V Y TE+ TA DY GA G++VF+ E
Sbjct: 12 FTDSVFEITESVGRFELKVMRYSGARGTVIVPYWTENDTATESKDYEGARGELVFENNES 71
Query: 157 EQRIRL 162
E+ I L
Sbjct: 72 EKFIDL 77
>pdb|2QVK|A Chain A, The Second Ca2+-Binding Domain Of The Na+-Ca2+ Exchanger
Is Essential For Regulation: Crystal Structures And
Mutational Analysis
pdb|2QVM|A Chain A, The Second Ca2+-Binding Domain Of The Na+-Ca2+ Exchanger
Is Essential For Regulation: Crystal Structures And
Mutational Analysis
Length = 192
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 46/77 (59%), Gaps = 1/77 (1%)
Query: 259 HAGSFGFLETSVTIAESVGMYELEVLRSCGARGTVEVGYKTYDDTAKAGTH-YVQTEGAL 317
HAG F F E ++ES+G+ E++VLR+ GARG V V YKT + TA+ G + T G L
Sbjct: 4 HAGIFTFEEPVTHVSESIGIMEVKVLRTSGARGNVIVPYKTIEGTARGGGEDFEDTCGEL 63
Query: 318 IFHNEETSYFYNRRSVD 334
F N+E + + +D
Sbjct: 64 EFQNDEIVKTISVKVID 80
Score = 35.0 bits (79), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 39/76 (51%), Gaps = 2/76 (2%)
Query: 89 GLTGARIFFKPQYYTVLENVGEFEVVVAREGDVSGTVTVEYATEDGTAQ-AGSDYVGAAG 147
G G F +P + V E++G EV V R G V V Y T +GTA+ G D+ G
Sbjct: 3 GHAGIFTFEEPVTH-VSESIGIMEVKVLRTSGARGNVIVPYKTIEGTARGGGEDFEDTCG 61
Query: 148 KIVFQPGELEQRIRLQ 163
++ FQ E+ + I ++
Sbjct: 62 ELEFQNDEIVKTISVK 77
>pdb|2FWU|A Chain A, Second Ca2+ Binding Domain Of The Na,Ca-Exchanger (Ncx1)
Length = 157
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/66 (46%), Positives = 42/66 (63%), Gaps = 1/66 (1%)
Query: 259 HAGSFGFLETSVTIAESVGMYELEVLRSCGARGTVEVGYKTYDDTAK-AGTHYVQTEGAL 317
HAG F F E ++ES+G+ E++VLR+ GARG V V YKT + TA+ G + T G L
Sbjct: 1 HAGIFTFEEPVTHVSESIGIMEVKVLRTSGARGNVIVPYKTIEGTARGGGEDFEDTCGEL 60
Query: 318 IFHNEE 323
F N+E
Sbjct: 61 EFQNDE 66
Score = 34.7 bits (78), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 38/73 (52%), Gaps = 2/73 (2%)
Query: 93 ARIF-FKPQYYTVLENVGEFEVVVAREGDVSGTVTVEYATEDGTAQ-AGSDYVGAAGKIV 150
A IF F+ V E++G EV V R G V V Y T +GTA+ G D+ G++
Sbjct: 2 AGIFTFEEPVTHVSESIGIMEVKVLRTSGARGNVIVPYKTIEGTARGGGEDFEDTCGELE 61
Query: 151 FQPGELEQRIRLQ 163
FQ E+ + I ++
Sbjct: 62 FQNDEIVKTISVK 74
>pdb|2KLT|A Chain A, Second Ca2+ Binding Domain Of Ncx1.3
Length = 163
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
Query: 260 AGSFGFLETSVTIAESVGMYELEVLRSCGARGTVEVGYKTYDDTAK-AGTHYVQTEGALI 318
AG F F E ++ES+G+ E++VLR+ GARG V V YKT + TA+ G + T G L
Sbjct: 9 AGIFTFEEPVTHVSESIGIMEVKVLRTSGARGNVIVPYKTIEGTARGGGEDFEDTCGELE 68
Query: 319 FHNEETSYFYNRRSVD 334
F N+E R D
Sbjct: 69 FQNDEIVKIITIRIFD 84
Score = 34.7 bits (78), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
Query: 93 ARIF-FKPQYYTVLENVGEFEVVVAREGDVSGTVTVEYATEDGTAQ-AGSDYVGAAGKIV 150
A IF F+ V E++G EV V R G V V Y T +GTA+ G D+ G++
Sbjct: 9 AGIFTFEEPVTHVSESIGIMEVKVLRTSGARGNVIVPYKTIEGTARGGGEDFEDTCGELE 68
Query: 151 FQPGEL 156
FQ E+
Sbjct: 69 FQNDEI 74
>pdb|2KLS|A Chain A, Apo-Form Of The Second Ca2+ Binding Domain Of Ncx1.4
Length = 164
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/65 (46%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 260 AGSFGFLETSVTIAESVGMYELEVLRSCGARGTVEVGYKTYDDTAK-AGTHYVQTEGALI 318
AG F F E ++ES+G+ E++VLR+ GARG V V YKT + TA+ G + T G L
Sbjct: 9 AGIFTFEEPVTHVSESIGIMEVKVLRTSGARGNVIVPYKTIEGTARGGGEDFEDTCGELE 68
Query: 319 FHNEE 323
F N+E
Sbjct: 69 FQNDE 73
Score = 34.7 bits (78), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 38/73 (52%), Gaps = 2/73 (2%)
Query: 93 ARIF-FKPQYYTVLENVGEFEVVVAREGDVSGTVTVEYATEDGTAQ-AGSDYVGAAGKIV 150
A IF F+ V E++G EV V R G V V Y T +GTA+ G D+ G++
Sbjct: 9 AGIFTFEEPVTHVSESIGIMEVKVLRTSGARGNVIVPYKTIEGTARGGGEDFEDTCGELE 68
Query: 151 FQPGELEQRIRLQ 163
FQ E+ + I ++
Sbjct: 69 FQNDEIVKTISVK 81
>pdb|2LT9|A Chain A, The Solution Structure Of Ca2+ Binding Domain 2b Of The
Third Isoform Of The Na+CA2+ EXCHANGER
Length = 157
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 46/76 (60%), Gaps = 1/76 (1%)
Query: 260 AGSFGFLETSVTIAESVGMYELEVLRSCGARGTVEVGYKTYDDTAKAGTH-YVQTEGALI 318
AG F F ++ ++ES+G+ E++VLR+ GARGTV V ++T + TAK G + G L
Sbjct: 11 AGIFTFECDTIHVSESIGVMEVKVLRTSGARGTVIVPFRTVEGTAKGGGEDFEDAYGELE 70
Query: 319 FHNEETSYFYNRRSVD 334
F N+ET + VD
Sbjct: 71 FKNDETVKTIRVKIVD 86
Score = 35.8 bits (81), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 40/73 (54%), Gaps = 2/73 (2%)
Query: 93 ARIF-FKPQYYTVLENVGEFEVVVAREGDVSGTVTVEYATEDGTAQ-AGSDYVGAAGKIV 150
A IF F+ V E++G EV V R GTV V + T +GTA+ G D+ A G++
Sbjct: 11 AGIFTFECDTIHVSESIGVMEVKVLRTSGARGTVIVPFRTVEGTAKGGGEDFEDAYGELE 70
Query: 151 FQPGELEQRIRLQ 163
F+ E + IR++
Sbjct: 71 FKNDETVKTIRVK 83
>pdb|3FQ4|A Chain A, Crystal Structure Of The Calx-Beta Domain Of Integrin
Beta4
pdb|3FQ4|B Chain B, Crystal Structure Of The Calx-Beta Domain Of Integrin
Beta4
pdb|3FSO|A Chain A, Crystal Structure Of The Calx-Beta Domain Of Integrin
Beta4, Calcium Soak
pdb|3FSO|B Chain B, Crystal Structure Of The Calx-Beta Domain Of Integrin
Beta4, Calcium Soak
pdb|3H6A|A Chain A, Structure Of The Calx-Beta Domain Of Integrin Beta4
Crystallized In The Presence Of Calcium
pdb|3H6A|B Chain B, Structure Of The Calx-Beta Domain Of Integrin Beta4
Crystallized In The Presence Of Calcium
Length = 123
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 22/33 (66%)
Query: 123 GTVTVEYATEDGTAQAGSDYVGAAGKIVFQPGE 155
G V Y T+DGTAQ DY+ G+++FQPGE
Sbjct: 36 GKSQVSYRTQDGTAQGNRDYIPVEGELLFQPGE 68
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Query: 262 SFGFLETSVTIAESVGMYELEVLRSCGARGTVEVGYKTYDDTAKAGTHYVQTEGALIFHN 321
SF E SV+ + V + V+R G +V Y+T D TA+ Y+ EG L+F
Sbjct: 9 SFEQPEFSVSRGDQVA--RIPVIRRVLDGGKSQVSYRTQDGTAQGNRDYIPVEGELLFQP 66
Query: 322 EE 323
E
Sbjct: 67 GE 68
>pdb|1I1R|B Chain B, Crystal Structure Of A CytokineRECEPTOR COMPLEX
Length = 181
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 17/31 (54%)
Query: 254 ILDDDHAGSFGFLETSVTIAESVGMYELEVL 284
I D DH G GF ETS + G +E EVL
Sbjct: 54 INDTDHCGLIGFNETSCLKKLADGFFEFEVL 84
>pdb|3F6K|A Chain A, Crystal Structure Of The Vps10p Domain Of Human
SortilinNTS3 IN Complex With Neurotensin
Length = 685
Score = 28.5 bits (62), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 39/88 (44%), Gaps = 10/88 (11%)
Query: 80 PTSPLPELGGLTGARIFFKPQYYTVLENVGEFEVVVAREGDVSGTVTVEYATEDGTAQAG 139
P + + GG + ++ P YYT+L++ G ++VA E ++++T++G Q
Sbjct: 426 PDVYISDDGGYSWTKMLEGPHYYTILDSGG---IIVAIEHSSRPINVIKFSTDEG--QCW 480
Query: 140 SDYVGAAGKIVF-----QPGELEQRIRL 162
Y I F +PG I +
Sbjct: 481 QTYTFTRDPIYFTGLASEPGARSMNISI 508
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.131 0.368
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,529,887
Number of Sequences: 62578
Number of extensions: 322627
Number of successful extensions: 926
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 864
Number of HSP's gapped (non-prelim): 55
length of query: 334
length of database: 14,973,337
effective HSP length: 99
effective length of query: 235
effective length of database: 8,778,115
effective search space: 2062857025
effective search space used: 2062857025
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)