Query psy11985
Match_columns 334
No_of_seqs 236 out of 1258
Neff 7.4
Searched_HMMs 46136
Date Fri Aug 16 15:40:32 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11985.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11985hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00845 caca sodium/calcium 100.0 1.1E-61 2.4E-66 502.2 30.5 287 7-334 308-602 (928)
2 KOG1306|consensus 99.9 1E-24 2.3E-29 210.1 13.0 150 29-310 214-363 (596)
3 smart00237 Calx_beta Domains i 99.9 6E-23 1.3E-27 160.8 13.3 90 92-181 1-90 (90)
4 TIGR00845 caca sodium/calcium 99.8 3.8E-20 8.3E-25 193.3 14.8 196 43-259 455-676 (928)
5 PF03160 Calx-beta: Calx-beta 99.8 3.2E-19 6.9E-24 142.0 13.0 95 87-181 5-100 (100)
6 smart00237 Calx_beta Domains i 99.8 2.2E-18 4.9E-23 134.9 10.7 75 260-334 1-75 (90)
7 PF03160 Calx-beta: Calx-beta 99.7 3.1E-17 6.7E-22 130.5 10.4 84 250-334 1-85 (100)
8 KOG1306|consensus 97.6 5.5E-05 1.2E-09 74.6 4.7 70 265-334 223-303 (596)
9 KOG4289|consensus 93.4 6.4 0.00014 44.6 18.1 44 96-139 268-316 (2531)
10 KOG4289|consensus 85.8 28 0.00061 39.9 15.3 98 96-208 373-479 (2531)
11 PF00345 PapD_N: Pili and flag 67.6 62 0.0013 25.9 10.1 85 95-183 2-91 (122)
12 PRK15295 fimbrial assembly cha 59.9 1.4E+02 0.003 27.2 11.5 89 92-183 18-109 (226)
13 PRK15195 fimbrial chaperone pr 54.7 1.7E+02 0.0037 26.7 12.0 90 92-183 24-114 (229)
14 PF11943 DUF3460: Protein of u 51.1 13 0.00029 26.6 2.1 27 16-42 5-31 (60)
15 PRK15233 putative fimbrial cha 51.0 2.1E+02 0.0045 26.5 11.8 89 91-182 38-127 (246)
16 PRK09926 putative chaperone pr 47.7 2.3E+02 0.0049 26.1 11.1 88 92-182 24-118 (246)
17 PF08522 DUF1735: Domain of un 47.3 56 0.0012 24.6 5.4 43 142-184 35-79 (86)
18 PF06382 DUF1074: Protein of u 44.8 11 0.00025 32.9 1.2 45 14-58 82-126 (183)
19 PRK15208 long polar fimbrial c 41.2 2.8E+02 0.006 25.2 11.6 89 93-183 21-110 (228)
20 cd00031 CA Cadherin repeat dom 37.3 2.5E+02 0.0055 23.7 20.6 51 170-220 62-115 (199)
21 PRK15246 fimbrial assembly cha 37.0 3.3E+02 0.0071 24.9 11.6 88 93-183 10-104 (233)
22 PRK15218 fimbrial chaperone pr 35.0 3.5E+02 0.0076 24.6 10.5 89 92-183 17-111 (226)
23 PRK15249 fimbrial chaperone pr 33.7 3.9E+02 0.0084 24.7 11.0 88 92-182 27-122 (253)
24 PF15416 DUF4623: Domain of un 30.8 5.2E+02 0.011 25.3 13.7 208 103-334 34-272 (442)
25 PRK09918 putative fimbrial cha 30.0 4.2E+02 0.0091 24.0 12.0 88 92-183 23-111 (230)
26 PF09164 VitD-bind_III: Vitami 29.9 83 0.0018 23.0 3.4 32 13-47 13-44 (68)
27 KOG0416|consensus 29.4 97 0.0021 27.0 4.4 63 160-226 20-87 (189)
28 PF11476 TgMIC1: Toxoplasma go 28.9 3.2E+02 0.0068 22.2 8.4 55 243-301 31-91 (137)
29 cd00407 Urease_beta Urease bet 26.0 2.7E+02 0.0059 22.1 6.0 70 260-330 3-81 (101)
30 TIGR02588 conserved hypothetic 23.6 4.2E+02 0.0091 21.8 7.3 77 255-332 28-116 (122)
31 PF03659 Glyco_hydro_71: Glyco 22.6 5.9E+02 0.013 25.1 9.2 33 122-154 281-316 (386)
32 PRK15188 fimbrial chaperone pr 20.4 6.6E+02 0.014 22.9 11.1 89 93-183 27-116 (228)
No 1
>TIGR00845 caca sodium/calcium exchanger 1. This model is specific for the eukaryotic sodium ion/calcium ion exchangers of the Caca family
Probab=100.00 E-value=1.1e-61 Score=502.19 Aligned_cols=287 Identities=41% Similarity=0.649 Sum_probs=256.7
Q ss_pred hhHhHHHhhHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHhcCCcceEEEEEeeeeecccceeeeccCCCCCC-CCCC--
Q psy11985 7 EEILEENETMNYATTLRELRQMHPNLKMEELEKMAENEIMKRVPKSRAFYRIQASRNIMGSFQSARKEKPQHR-PTSP-- 83 (334)
Q Consensus 7 ~~~~~~~~r~~~~~~~~~~~~~~p~~~~~~~~~~a~~~~~~~~~~sr~~yri~a~r~~~g~~~i~~~~~~~~~-~~~~-- 83 (334)
+..+++++||+|+++||+|||+||++++|++++||+++++.++||+||||||||+|+|+|++++++++....+ +...
T Consensus 308 ~~~~~~~~r~~~~~~l~el~~~~p~~~~~~l~~~a~~~~~~~~~ksRAfYRiqaTR~~~G~g~i~~k~~~~~~~~~~~~~ 387 (928)
T TIGR00845 308 EVKEFDEARREMIRILKELKQKHPDKDLEQLEEMANYQVLSRQQKSRAFYRIQATRLMTGAGNILKKHAADAARKAVSMH 387 (928)
T ss_pred ccccHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhccCCCcceeeeeeehhhhccCCcchhhhHHhhhchhhcch
Confidence 3346889999999999999999999999999999999999999999999999999999999999887554433 1111
Q ss_pred ---CCccCCCCceEEEEecceEEEEcCCeEEEEEEEEec-CCCceEEEEEEeecCCccCCCCccccceEEEEcCCCeEEE
Q psy11985 84 ---LPELGGLTGARIFFKPQYYTVLENVGEFEVVVAREG-DVSGTVTVEYATEDGTAQAGSDYVGAAGKIVFQPGELEQR 159 (334)
Q Consensus 84 ---~~~~~d~~~~~v~F~~~~~~v~E~~g~v~v~V~R~g-~~~~~v~V~~~t~~GTA~~g~Dy~~~~g~l~F~~get~k~ 159 (334)
..+..|+++++++|++++|+|.|++|++.++|.|.| ++.++++|+|+|.||||.+|.||.+.+|+|+|.|||++|+
T Consensus 388 ~~~~~~~~dd~~s~i~Fe~~~Y~V~En~GtV~VtV~R~GGdl~~tVsVdY~T~DGTA~AG~DY~~~sGTLtF~PGEt~Kt 467 (928)
T TIGR00845 388 EVATDDEENDPVSKIFFEPGHYTCLENCGTVALTVVRRGGDLTNTVYVDYRTEDGTANAGSDYEFTEGTLVFKPGETQKE 467 (928)
T ss_pred hccccccccCCcceEEecCCeEEEeecCcEEEEEEEEccCCCCceEEEEEEccCCccCCCCCccccCceEEECCCceEEE
Confidence 122467889999999999999999999999999996 6788999999999999999999999999999999999999
Q ss_pred EEEEEeeCCCcccCeEEEEEEecccCccccCCcceEEEEecCCCCCccceeceEEEEecccceEEEeeeeecceEEEecc
Q psy11985 160 IRLQVIDDDVFEEDEYFFVHLTKVKDAKLVAPSSATVMILDDDHAGSFGFLETSVTIAESVGIVKELWSTRHGVVHLTKV 239 (334)
Q Consensus 160 i~v~IidD~~~E~dE~F~v~L~~~~~~~~~~~~~~~vtI~ddd~~~~~~f~~~~~~v~E~~G~v~v~~~~~~~~v~l~~~ 239 (334)
|+|.|+||+++|+||+|+|+|++|+.+...+ .+.+++ ..
T Consensus 468 ItV~IIDDdi~E~DE~F~V~LSNp~~g~~~G------~~~~~~-----------------------------------~~ 506 (928)
T TIGR00845 468 FRIGIIDDDIFEEDEHFYVRLSNLRVGSEDG------ILEANH-----------------------------------VS 506 (928)
T ss_pred EEEEEccCCCCCCCceEEEEEeCCCCCCccc------cccccc-----------------------------------cc
Confidence 9999999999999999999999998652100 000000 01
Q ss_pred CCeeecCCceEEEEEeCCCCCceEEEeeceEEEEeeeeEEEEEEEEecCCCccEEEEEEecCCCccCC-CCccccceEEE
Q psy11985 240 KDAKLVAPSSATVMILDDDHAGSFGFLETSVTIAESVGMYELEVLRSCGARGTVEVGYKTYDDTAKAG-THYVQTEGALI 318 (334)
Q Consensus 240 ~~~~lg~~~~atVtI~ddd~~g~~~F~~~~~~V~E~~g~v~v~V~R~~g~~g~v~V~~~t~~gtA~~g-~Dy~~~~g~lt 318 (334)
..+.||.|+.|+|||+|||++|+|+|+++.|.|.|+.|.++++|.|++|++|.|+|+|.|.+|||++| .||...+|+|+
T Consensus 507 ~~A~Lg~ps~ATVTIlDDD~aGIfsFe~~~~sV~Es~G~vtvtV~RtsGa~G~VtV~Y~T~dGTA~aGg~DY~~~sGtLt 586 (928)
T TIGR00845 507 AVAQLASPNTATVTILDDDHAGIFTFEEDVFHVSESIGIMEVKVLRTSGARGTVIVPYRTVEGTARGGGKDFEDTCGELE 586 (928)
T ss_pred ccceecCCceEEEEEecCcccCcccccCceEEEEcCCCEEEEEEEEcCCCCeeEEEEEEeecCccCCCCCCcccccceEE
Confidence 25789999999999999999999999999999999999999999999999999999999999999998 99999999999
Q ss_pred EcCCCeEEEEEEEeeC
Q psy11985 319 FHNEETSYFYNRRSVD 334 (334)
Q Consensus 319 F~~ge~~k~i~I~Iid 334 (334)
|++||++|+|+|+|+|
T Consensus 587 F~~GEtsKtItV~IiD 602 (928)
T TIGR00845 587 FENDETEKTIRVKIVD 602 (928)
T ss_pred EcCCcEEEEEEEEEcC
Confidence 9999999999999987
No 2
>KOG1306|consensus
Probab=99.92 E-value=1e-24 Score=210.12 Aligned_cols=150 Identities=49% Similarity=0.711 Sum_probs=130.7
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCcceEEEEEeeeeecccceeeeccCCCCCCCCCCCCccCCCCceEEEEecceEEEEcCC
Q psy11985 29 HPNLKMEELEKMAENEIMKRVPKSRAFYRIQASRNIMGSFQSARKEKPQHRPTSPLPELGGLTGARIFFKPQYYTVLENV 108 (334)
Q Consensus 29 ~p~~~~~~~~~~a~~~~~~~~~~sr~~yri~a~r~~~g~~~i~~~~~~~~~~~~~~~~~~d~~~~~v~F~~~~~~v~E~~ 108 (334)
+|..-.++....|+|+++..++|+|+|||||++|+|+|++++++ .++
T Consensus 214 ~~~d~p~~~~d~A~y~V~~~~~ksrafyriqaTr~m~gsg~~~r--------------~d~------------------- 260 (596)
T KOG1306|consen 214 KPGDHPEDEVDEAEYHVLESQRKSRAFYRIQATRLMQGSGNAVR--------------TDE------------------- 260 (596)
T ss_pred CCCCChhhhhhHHHHHHHhhhhhceeeEEeeeeeccccccceee--------------ecc-------------------
Confidence 45554444444599999999999999999999999999998864 011
Q ss_pred eEEEEEEEEecCCCceEEEEEEeecCCccCCCCccccceEEEEcCCCeEEEEEEEEeeCCCcccCeEEEEEEecccCccc
Q psy11985 109 GEFEVVVAREGDVSGTVTVEYATEDGTAQAGSDYVGAAGKIVFQPGELEQRIRLQVIDDDVFEEDEYFFVHLTKVKDAKL 188 (334)
Q Consensus 109 g~v~v~V~R~g~~~~~v~V~~~t~~GTA~~g~Dy~~~~g~l~F~~get~k~i~v~IidD~~~E~dE~F~v~L~~~~~~~~ 188 (334)
|.|+ +|+|+||+|.+|.||...+|+|.|+||+++|+++|.|+||+++|+||
T Consensus 261 --------r~g~-------~y~TedgsA~AgtDyv~~egtl~F~PG~~~q~~~V~IiDddife~dE-------------- 311 (596)
T KOG1306|consen 261 --------RDGG-------DYKTEDGSAEAGTDYVGIEGTLDFAPGVRMQTFQVGIIDDDIFEEDE-------------- 311 (596)
T ss_pred --------ccCC-------ccccccccccccCceeeeecccccCCCccceeEEEEEEcccCCCccc--------------
Confidence 5555 89999999999999999999999999999999999999999998765
Q ss_pred cCCcceEEEEecCCCCCccceeceEEEEecccceEEEeeeeecceEEEeccCCeeecCCceEEEEEeCCCCCceEEEeec
Q psy11985 189 VAPSSATVMILDDDHAGSFGFLETSVTIAESVGIVKELWSTRHGVVHLTKVKDAKLVAPSSATVMILDDDHAGSFGFLET 268 (334)
Q Consensus 189 ~~~~~~~vtI~ddd~~~~~~f~~~~~~v~E~~G~v~v~~~~~~~~v~l~~~~~~~lg~~~~atVtI~ddd~~g~~~F~~~ 268 (334)
|+|.|||++|.|.|..+
T Consensus 312 ---------------------------------------------------------------v~i~ddDhag~f~f~~~ 328 (596)
T KOG1306|consen 312 ---------------------------------------------------------------VTILDDDHAGIFLFQMP 328 (596)
T ss_pred ---------------------------------------------------------------eeecCCCcceeEEeecc
Confidence 56788889999999876
Q ss_pred eEEEEeeeeEEEEEEEEecCCCccEEEEEEecCCCccCCCCc
Q psy11985 269 SVTIAESVGMYELEVLRSCGARGTVEVGYKTYDDTAKAGTHY 310 (334)
Q Consensus 269 ~~~V~E~~g~v~v~V~R~~g~~g~v~V~~~t~~gtA~~g~Dy 310 (334)
.|.+...|.|++|++|++.|+|+|.+|||+.|.|-
T Consensus 329 -------~G~~~~~v~RtsGargtv~vpy~Tv~~Ta~~~e~~ 363 (596)
T KOG1306|consen 329 -------MGAVLGEVNRTSGARGTVIVPYQTVCGTAKGGEDK 363 (596)
T ss_pred -------ccceeeeeeeccccccceeeeeeeccCCCCCCccc
Confidence 78999999999999999999999999999988443
No 3
>smart00237 Calx_beta Domains in Na-Ca exchangers and integrin-beta4. Domain in Na-Ca exchangers and integrin subunit beta4 (and some cyanobacterial proteins)
Probab=99.90 E-value=6e-23 Score=160.80 Aligned_cols=90 Identities=51% Similarity=0.839 Sum_probs=87.8
Q ss_pred ceEEEEecceEEEEcCCeEEEEEEEEecCCCceEEEEEEeecCCccCCCCccccceEEEEcCCCeEEEEEEEEeeCCCcc
Q psy11985 92 GARIFFKPQYYTVLENVGEFEVVVAREGDVSGTVTVEYATEDGTAQAGSDYVGAAGKIVFQPGELEQRIRLQVIDDDVFE 171 (334)
Q Consensus 92 ~~~v~F~~~~~~v~E~~g~v~v~V~R~g~~~~~v~V~~~t~~GTA~~g~Dy~~~~g~l~F~~get~k~i~v~IidD~~~E 171 (334)
.|.|+|+++.|+|.|+.|.+.|+|.|+|++.++++|.|.|.+|||.+|.||.+..|+|+|++|+++|.|+|+|+||.++|
T Consensus 1 ~g~v~F~~~~~~V~E~~g~~~v~V~R~g~~~~~~~V~~~t~~gtA~~g~Dy~~~~g~l~F~~ge~~k~i~i~i~dD~~~E 80 (90)
T smart00237 1 AGTVGFEQPVYTVSESDGEVEVCVVRTGGARGTVVVPYRTEDGTATAGSDYEPVEGTLTFPPGETEKCIRIKIIDDDIYE 80 (90)
T ss_pred CeEEEECCCeEEEEECCeEEEEEEEecCCCCcEEEEEEEEcCCcCCCCCCccccceEEEECCCCEEEEEEEEEeCCCCcC
Confidence 37899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCeEEEEEEe
Q psy11985 172 EDEYFFVHLT 181 (334)
Q Consensus 172 ~dE~F~v~L~ 181 (334)
.+|+|.|+|+
T Consensus 81 ~~e~F~v~Ls 90 (90)
T smart00237 81 KDETFYVRLS 90 (90)
T ss_pred CceeEEEEeC
Confidence 9999999995
No 4
>TIGR00845 caca sodium/calcium exchanger 1. This model is specific for the eukaryotic sodium ion/calcium ion exchangers of the Caca family
Probab=99.83 E-value=3.8e-20 Score=193.33 Aligned_cols=196 Identities=22% Similarity=0.330 Sum_probs=143.4
Q ss_pred HHHHhcCCcceEEEEEeeeeecc----cceeeeccCCCCC--------------C----CCCCCCcc-CCCCceEEEEec
Q psy11985 43 NEIMKRVPKSRAFYRIQASRNIM----GSFQSARKEKPQH--------------R----PTSPLPEL-GGLTGARIFFKP 99 (334)
Q Consensus 43 ~~~~~~~~~sr~~yri~a~r~~~----g~~~i~~~~~~~~--------------~----~~~~~~~~-~d~~~~~v~F~~ 99 (334)
-.+.|.+++.....+|.....-. ..+.+.+..+... + +..++..+ +|+..+.++|++
T Consensus 455 GTLtF~PGEt~KtItV~IIDDdi~E~DE~F~V~LSNp~~g~~~G~~~~~~~~~~A~Lg~ps~ATVTIlDDD~aGIfsFe~ 534 (928)
T TIGR00845 455 GTLVFKPGETQKEFRIGIIDDDIFEEDEHFYVRLSNLRVGSEDGILEANHVSAVAQLASPNTATVTILDDDHAGIFTFEE 534 (928)
T ss_pred ceEEECCCceEEEEEEEEccCCCCCCCceEEEEEeCCCCCCcccccccccccccceecCCceEEEEEecCcccCcccccC
Confidence 35667888888888888665422 1234433332211 1 11111222 777889999999
Q ss_pred ceEEEEcCCeEEEEEEEEecCCCceEEEEEEeecCCccCC-CCccccceEEEEcCCCeEEEEEEEEeeCCCcccCeEEEE
Q psy11985 100 QYYTVLENVGEFEVVVAREGDVSGTVTVEYATEDGTAQAG-SDYVGAAGKIVFQPGELEQRIRLQVIDDDVFEEDEYFFV 178 (334)
Q Consensus 100 ~~~~v~E~~g~v~v~V~R~g~~~~~v~V~~~t~~GTA~~g-~Dy~~~~g~l~F~~get~k~i~v~IidD~~~E~dE~F~v 178 (334)
..|.|.|+.|.+.++|.|+++..+.++|.|.|.+|||.+| .||.+.+|+|+|++||++|+|+|+|+||.++|.+|+|+|
T Consensus 535 ~~~sV~Es~G~vtvtV~RtsGa~G~VtV~Y~T~dGTA~aGg~DY~~~sGtLtF~~GEtsKtItV~IiDD~~~E~dEtF~V 614 (928)
T TIGR00845 535 DVFHVSESIGIMEVKVLRTSGARGTVIVPYRTVEGTARGGGKDFEDTCGELEFENDETEKTIRVKIVDDEEYEKNDTFFI 614 (928)
T ss_pred ceEEEEcCCCEEEEEEEEcCCCCeeEEEEEEeecCccCCCCCCcccccceEEEcCCcEEEEEEEEEcCCCcccCceeEEE
Confidence 9999999999999999999999999999999999999998 999999999999999999999999999999999999999
Q ss_pred EEecccCccccCC--cceEEEEecCCCCCccceeceEEEEecccceEEEeeeeecceEEEeccCCeeecCCceEEEEEeC
Q psy11985 179 HLTKVKDAKLVAP--SSATVMILDDDHAGSFGFLETSVTIAESVGIVKELWSTRHGVVHLTKVKDAKLVAPSSATVMILD 256 (334)
Q Consensus 179 ~L~~~~~~~~~~~--~~~~vtI~ddd~~~~~~f~~~~~~v~E~~G~v~v~~~~~~~~v~l~~~~~~~lg~~~~atVtI~d 256 (334)
+|++|.+...+.. ...+.+|.++|...+.... ...++..-++++||....++|+|..
T Consensus 615 ~Ls~P~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---------------------e~~~iae~gkp~LGe~tk~~V~I~e 673 (928)
T TIGR00845 615 ELGEPRWAKRGIKAALLLNETITDDDQKLTSKEE---------------------EERRIAEMGKPRLGEHTKLEVIIEE 673 (928)
T ss_pred EEcCCcccccccccchhccccccccccccccccc---------------------hhHHHHhcCCCcCCCceeEEEEEee
Confidence 9999997654322 1223345555543221100 0000111357899999999999987
Q ss_pred CCC
Q psy11985 257 DDH 259 (334)
Q Consensus 257 dd~ 259 (334)
++.
T Consensus 674 s~e 676 (928)
T TIGR00845 674 SYE 676 (928)
T ss_pred cHH
Confidence 763
No 5
>PF03160 Calx-beta: Calx-beta domain; InterPro: IPR003644 The calx-beta motif is present as a tandem repeat in the cytoplasmic domains of Calx Na-Ca exchangers, which are used to expel calcium from cells. This motif overlaps domains used for calcium binding and regulation. The calx-beta motif is also present in the cytoplasmic tail of mammalian integrin-beta4, which mediates the bi-directional transfer of signals across the plasma membrane, as well as in some cyanobacterial proteins. This motif contains a series of beta-strands and turns that form a self-contained beta-sheet [, ].; GO: 0007154 cell communication, 0016021 integral to membrane; PDB: 3H6A_B 3FSO_A 3FQ4_B 2DPK_A 2QVM_A 3GIN_B 2QVK_A 2FWU_A 2FWS_A 3E9U_A ....
Probab=99.81 E-value=3.2e-19 Score=141.99 Aligned_cols=95 Identities=43% Similarity=0.674 Sum_probs=81.0
Q ss_pred cCCCCceEEEEecceEEEEcCCeEEEEEEEEecC-CCceEEEEEEeecCCccCCCCccccceEEEEcCCCeEEEEEEEEe
Q psy11985 87 LGGLTGARIFFKPQYYTVLENVGEFEVVVAREGD-VSGTVTVEYATEDGTAQAGSDYVGAAGKIVFQPGELEQRIRLQVI 165 (334)
Q Consensus 87 ~~d~~~~~v~F~~~~~~v~E~~g~v~v~V~R~g~-~~~~v~V~~~t~~GTA~~g~Dy~~~~g~l~F~~get~k~i~v~Ii 165 (334)
+.|++.+.|+|.+..|++.|+.|.+.++|.|.++ +.+.+.|.|.+.+|||..|.||.+.+++|+|++|+++++|.|.|+
T Consensus 5 I~d~d~~~v~f~~~~~~v~E~~~~~~v~V~~~~~~~~~~v~v~~~~~~gtA~~~~Dy~~~~~~v~f~~g~t~~~i~i~i~ 84 (100)
T PF03160_consen 5 ILDDDDPTVSFSSPSYTVSEGDGTVTVTVTRSGGSLDGPVTVNYSTVDGTATAGSDYSPTSGTVTFPPGETSKTINITII 84 (100)
T ss_dssp EE-TTSEEEEESSSEEEEETTSSEEEEEEEEESS-TSSEEEEEEEEEESSSETTTSBE--EEEEEE-TT-SEEEEEEEB-
T ss_pred EECCCCCEEEEeCCEEEEEeCCCEEEEEEEEcccCCCcceEEEEEEeCCccccccccccceeEEEECCCCeEEEEEEEEe
Confidence 3344455999999999999999999999999965 589999999999999999999999999999999999999999999
Q ss_pred eCCCcccCeEEEEEEe
Q psy11985 166 DDDVFEEDEYFFVHLT 181 (334)
Q Consensus 166 dD~~~E~dE~F~v~L~ 181 (334)
+|.++|++|+|.|.|+
T Consensus 85 dD~~~E~~E~F~v~Ls 100 (100)
T PF03160_consen 85 DDDIPEGDETFTVRLS 100 (100)
T ss_dssp --SSTTSSEEEEEEEE
T ss_pred CCCCcCCceEEEEEEC
Confidence 9999999999999996
No 6
>smart00237 Calx_beta Domains in Na-Ca exchangers and integrin-beta4. Domain in Na-Ca exchangers and integrin subunit beta4 (and some cyanobacterial proteins)
Probab=99.77 E-value=2.2e-18 Score=134.87 Aligned_cols=75 Identities=44% Similarity=0.607 Sum_probs=73.3
Q ss_pred CceEEEeeceEEEEeeeeEEEEEEEEecCCCccEEEEEEecCCCccCCCCccccceEEEEcCCCeEEEEEEEeeC
Q psy11985 260 AGSFGFLETSVTIAESVGMYELEVLRSCGARGTVEVGYKTYDDTAKAGTHYVQTEGALIFHNEETSYFYNRRSVD 334 (334)
Q Consensus 260 ~g~~~F~~~~~~V~E~~g~v~v~V~R~~g~~g~v~V~~~t~~gtA~~g~Dy~~~~g~ltF~~ge~~k~i~I~Iid 334 (334)
+|.|+|+++.|+|.|+.|.+.++|.|+|++.++++|+|.|.+|||++|.||.+.+|+|+|++||++|+|+|+|+|
T Consensus 1 ~g~v~F~~~~~~V~E~~g~~~v~V~R~g~~~~~~~V~~~t~~gtA~~g~Dy~~~~g~l~F~~ge~~k~i~i~i~d 75 (90)
T smart00237 1 AGTVGFEQPVYTVSESDGEVEVCVVRTGGARGTVVVPYRTEDGTATAGSDYEPVEGTLTFPPGETEKCIRIKIID 75 (90)
T ss_pred CeEEEECCCeEEEEECCeEEEEEEEecCCCCcEEEEEEEEcCCcCCCCCCccccceEEEECCCCEEEEEEEEEeC
Confidence 488999999999999999999999999999999999999999999999999999999999999999999999987
No 7
>PF03160 Calx-beta: Calx-beta domain; InterPro: IPR003644 The calx-beta motif is present as a tandem repeat in the cytoplasmic domains of Calx Na-Ca exchangers, which are used to expel calcium from cells. This motif overlaps domains used for calcium binding and regulation. The calx-beta motif is also present in the cytoplasmic tail of mammalian integrin-beta4, which mediates the bi-directional transfer of signals across the plasma membrane, as well as in some cyanobacterial proteins. This motif contains a series of beta-strands and turns that form a self-contained beta-sheet [, ].; GO: 0007154 cell communication, 0016021 integral to membrane; PDB: 3H6A_B 3FSO_A 3FQ4_B 2DPK_A 2QVM_A 3GIN_B 2QVK_A 2FWU_A 2FWS_A 3E9U_A ....
Probab=99.72 E-value=3.1e-17 Score=130.51 Aligned_cols=84 Identities=43% Similarity=0.571 Sum_probs=73.3
Q ss_pred EEEEEeCCCCCceEEEeeceEEEEeeeeEEEEEEEEecCC-CccEEEEEEecCCCccCCCCccccceEEEEcCCCeEEEE
Q psy11985 250 ATVMILDDDHAGSFGFLETSVTIAESVGMYELEVLRSCGA-RGTVEVGYKTYDDTAKAGTHYVQTEGALIFHNEETSYFY 328 (334)
Q Consensus 250 atVtI~ddd~~g~~~F~~~~~~V~E~~g~v~v~V~R~~g~-~g~v~V~~~t~~gtA~~g~Dy~~~~g~ltF~~ge~~k~i 328 (334)
|+|+|+|||.+ .++|.++.|++.|+.|.+.++|.|++|. .+.+.|.|.+.+|+|++|.||...+++|+|.+|+++|+|
T Consensus 1 atvtI~d~d~~-~v~f~~~~~~v~E~~~~~~v~V~~~~~~~~~~v~v~~~~~~gtA~~~~Dy~~~~~~v~f~~g~t~~~i 79 (100)
T PF03160_consen 1 ATVTILDDDDP-TVSFSSPSYTVSEGDGTVTVTVTRSGGSLDGPVTVNYSTVDGTATAGSDYSPTSGTVTFPPGETSKTI 79 (100)
T ss_dssp EEEEEE-TTSE-EEEESSSEEEEETTSSEEEEEEEEESS-TSSEEEEEEEEEESSSETTTSBE--EEEEEE-TT-SEEEE
T ss_pred CEEEEECCCCC-EEEEeCCEEEEEeCCCEEEEEEEEcccCCCcceEEEEEEeCCccccccccccceeEEEECCCCeEEEE
Confidence 68999998887 9999999999999999999999999875 899999999999999999999999999999999999999
Q ss_pred EEEeeC
Q psy11985 329 NRRSVD 334 (334)
Q Consensus 329 ~I~Iid 334 (334)
.|.|+|
T Consensus 80 ~i~i~d 85 (100)
T PF03160_consen 80 NITIID 85 (100)
T ss_dssp EEEB--
T ss_pred EEEEeC
Confidence 999986
No 8
>KOG1306|consensus
Probab=97.63 E-value=5.5e-05 Score=74.62 Aligned_cols=70 Identities=27% Similarity=0.255 Sum_probs=54.9
Q ss_pred EeeceEEEEeeeeEEEEEEEEec----CCCccEEE-------EEEecCCCccCCCCccccceEEEEcCCCeEEEEEEEee
Q psy11985 265 FLETSVTIAESVGMYELEVLRSC----GARGTVEV-------GYKTYDDTAKAGTHYVQTEGALIFHNEETSYFYNRRSV 333 (334)
Q Consensus 265 F~~~~~~V~E~~g~v~v~V~R~~----g~~g~v~V-------~~~t~~gtA~~g~Dy~~~~g~ltF~~ge~~k~i~I~Ii 333 (334)
|....|.|.|.....++...+.+ -.+|...= .|+|++|+|.+|.||...+|+|.|+||+++|+|+|.||
T Consensus 223 ~d~A~y~V~~~~~ksrafyriqaTr~m~gsg~~~r~d~r~g~~y~TedgsA~AgtDyv~~egtl~F~PG~~~q~~~V~Ii 302 (596)
T KOG1306|consen 223 VDEAEYHVLESQRKSRAFYRIQATRLMQGSGNAVRTDERDGGDYKTEDGSAEAGTDYVGIEGTLDFAPGVRMQTFQVGII 302 (596)
T ss_pred hhHHHHHHHhhhhhceeeEEeeeeeccccccceeeeccccCCccccccccccccCceeeeecccccCCCccceeEEEEEE
Confidence 33477888887766665555432 22333323 69999999999999999999999999999999999999
Q ss_pred C
Q psy11985 334 D 334 (334)
Q Consensus 334 d 334 (334)
|
T Consensus 303 D 303 (596)
T KOG1306|consen 303 D 303 (596)
T ss_pred c
Confidence 7
No 9
>KOG4289|consensus
Probab=93.38 E-value=6.4 Score=44.61 Aligned_cols=44 Identities=27% Similarity=0.405 Sum_probs=30.8
Q ss_pred EEecceE--EEEcC--CeEEEEEEEEe-cCCCceEEEEEEeecCCccCC
Q psy11985 96 FFKPQYY--TVLEN--VGEFEVVVARE-GDVSGTVTVEYATEDGTAQAG 139 (334)
Q Consensus 96 ~F~~~~~--~v~E~--~g~v~v~V~R~-g~~~~~v~V~~~t~~GTA~~g 139 (334)
-|++..| .+.|| .|.-.++|.-+ |++.-...+.|+...|.|..-
T Consensus 268 vFEq~~Y~e~lREn~evGy~vLtvrAtD~Dsp~Nani~Yrl~eg~~~~~ 316 (2531)
T KOG4289|consen 268 VFEQDEYREELRENLEVGYEVLTVRATDGDSPPNANIRYRLLEGNAKNV 316 (2531)
T ss_pred ccchhHHHHHHhhccccCceEEEEEeccCCCCCCCceEEEecCCCccce
Confidence 3677777 57776 36555676544 777777889999888866543
No 10
>KOG4289|consensus
Probab=85.82 E-value=28 Score=39.88 Aligned_cols=98 Identities=23% Similarity=0.375 Sum_probs=54.2
Q ss_pred EEecceE--EEEcCCe--EEEEEEEEe-cCCCceEEEEEEeecCCccCCCCccc-cceEEEEcCCCeEEEEEEEEeeCCC
Q psy11985 96 FFKPQYY--TVLENVG--EFEVVVARE-GDVSGTVTVEYATEDGTAQAGSDYVG-AAGKIVFQPGELEQRIRLQVIDDDV 169 (334)
Q Consensus 96 ~F~~~~~--~v~E~~g--~v~v~V~R~-g~~~~~v~V~~~t~~GTA~~g~Dy~~-~~g~l~F~~get~k~i~v~IidD~~ 169 (334)
+|+...| +|.|+.+ .+.++|+-+ .+-.....|.|....|++..+ =|.. ..|.|. ++.---
T Consensus 373 qFse~~Yvvqv~Edvt~~avvlrV~AtDrD~g~Ng~VHYsi~Sgn~~G~-f~id~~tGel~-------------vv~plD 438 (2531)
T KOG4289|consen 373 QFSEKRYVVQVREDVTPPAVVLRVTATDRDKGTNGKVHYSIASGNGRGQ-FYIDSLTGELD-------------VVEPLD 438 (2531)
T ss_pred cccccceEEEecccCCCCceEEEEEecccCCCcCceEEEEeeccCcccc-EEEecccceEE-------------Eecccc
Confidence 4666655 6788864 666666654 333445678999888887544 3332 234332 222222
Q ss_pred cccCeEEEEEEecccCcc--ccCCcceEEEEec-CCCCCccc
Q psy11985 170 FEEDEYFFVHLTKVKDAK--LVAPSSATVMILD-DDHAGSFG 208 (334)
Q Consensus 170 ~E~dE~F~v~L~~~~~~~--~~~~~~~~vtI~d-dd~~~~~~ 208 (334)
+|.. .+.+++..-.++. +......+|..+| +|.+|+|-
T Consensus 439 ~e~~-~ytl~IrAqDggrPpLsn~sgl~iqVlDINDhaPifv 479 (2531)
T KOG4289|consen 439 FENS-EYTLRIRAQDGGRPPLSNTSGLVIQVLDINDHAPIFV 479 (2531)
T ss_pred ccCC-eeEEEEEcccCCCCCccCCCceEEEEEecCCCCceeE
Confidence 3333 5666666555554 3344455577777 46666543
No 11
>PF00345 PapD_N: Pili and flagellar-assembly chaperone, PapD N-terminal domain; InterPro: IPR016147 Most Gram-negative bacteria possess a supramolecular structure - the pili - on their surface, which mediates attachment to specific receptors. Many interactive subunits are required to assemble pili, but their assembly only takes place after translocation across the cytoplasmic membrane. Periplasmic chaperones assist pili assembly by binding to the subunits, thereby preventing premature aggregation [, ]. Pili chaperones are structurally, and possibly evolutionarily, related to the immunoglobulin superfamily [, ]: they contain two globular domains, with a topology identical to an immunoglobulin fold. This entry represents the N-terminal domain of pili assembly chaperone, and has a beta-sandwich fold consisting of seven strands in two sheets with a Greek key topology.; GO: 0007047 cellular cell wall organization, 0030288 outer membrane-bounded periplasmic space; PDB: 2CO6_B 2CO7_B 1L4I_B 3GFU_A 3F65_F 3F6L_A 3F6I_A 3GEW_B 3DSN_D 2OS7_B ....
Probab=67.57 E-value=62 Score=25.86 Aligned_cols=85 Identities=14% Similarity=0.230 Sum_probs=54.3
Q ss_pred EEEecceEEEEcCCeEEEEEEEEecCCCceEEEEEEeec--C--CccCCCCccccceEEEEcCCCeEEEEEEEEeeCCCc
Q psy11985 95 IFFKPQYYTVLENVGEFEVVVAREGDVSGTVTVEYATED--G--TAQAGSDYVGAAGKIVFQPGELEQRIRLQVIDDDVF 170 (334)
Q Consensus 95 v~F~~~~~~v~E~~g~v~v~V~R~g~~~~~v~V~~~t~~--G--TA~~g~Dy~~~~g~l~F~~get~k~i~v~IidD~~~ 170 (334)
|.+++..+.+.++.....++|.=.+. .+..+.....+ + ......+|....-.+...||+. +.+.| +..+..+
T Consensus 2 i~i~~trii~~~~~~~~~i~v~N~~~--~~~~vq~~v~~~~~~~~~~~~~~~~vsPp~~~L~pg~~-q~vRv-~~~~~~~ 77 (122)
T PF00345_consen 2 IQISPTRIIFNESQRSASITVTNNSD--QPYLVQVWVYDQDDEDEDEPTDPFIVSPPIFRLEPGES-QTVRV-YRGSKLP 77 (122)
T ss_dssp EEESSSEEEEETTSSEEEEEEEESSS--SEEEEEEEEEETTSTTSSSSSSSEEEESSEEEEETTEE-EEEEE-EECSGS-
T ss_pred EEEccEEEEEeCCCCEEEEEEEcCCC--CcEEEEEEEEcCCCcccccccccEEEeCCceEeCCCCc-EEEEE-EecCCCC
Confidence 45677788888887888888875565 44444444443 1 1122346777778889999977 77888 6666655
Q ss_pred cc-CeEEEEEEecc
Q psy11985 171 EE-DEYFFVHLTKV 183 (334)
Q Consensus 171 E~-dE~F~v~L~~~ 183 (334)
.. ...|+|.+...
T Consensus 78 ~~~E~~yrl~~~~i 91 (122)
T PF00345_consen 78 IDRESLYRLSFREI 91 (122)
T ss_dssp SSS-EEEEEEEEEE
T ss_pred CCceEEEEEEEEEE
Confidence 54 45677777653
No 12
>PRK15295 fimbrial assembly chaperone SthB; Provisional
Probab=59.88 E-value=1.4e+02 Score=27.18 Aligned_cols=89 Identities=11% Similarity=0.091 Sum_probs=59.1
Q ss_pred ceEEEEecceEEEEcCCeEEEEEEEEecCCCceEEEEEEeecCC--ccCCCCccccceEEEEcCCCeEEEEEEEEeeCCC
Q psy11985 92 GARIFFKPQYYTVLENVGEFEVVVAREGDVSGTVTVEYATEDGT--AQAGSDYVGAAGKIVFQPGELEQRIRLQVIDDDV 169 (334)
Q Consensus 92 ~~~v~F~~~~~~v~E~~g~v~v~V~R~g~~~~~v~V~~~t~~GT--A~~g~Dy~~~~g~l~F~~get~k~i~v~IidD~~ 169 (334)
.+.|.+....+...|+.....+.|.=.+.. +.-|.-.+.++. .....+|..+.-.....||+. +.++|.-..+.+
T Consensus 18 ~A~i~l~~TRvI~~~~~~~~si~i~N~~~~--p~LvQsWv~~~~~~~~~~~pFivtPPl~rl~p~~~-q~lRI~~~~~~L 94 (226)
T PRK15295 18 HASIVVGGTRLVFDGNNDESSINVENKDSK--ANLVQSWLSVVDPQVTNKQAFIITPPLFRLDAGQK-NSIRVIRSGAPL 94 (226)
T ss_pred cccEEeCceEEEEeCCCceeEEEEEeCCCC--cEEEEEEEeCCCCCCCCCCCEEEcCCeEEECCCCc-eEEEEEECCCCC
Confidence 356777888888888877888888544433 333333233332 222357888888899999987 556666667778
Q ss_pred cccCeE-EEEEEecc
Q psy11985 170 FEEDEY-FFVHLTKV 183 (334)
Q Consensus 170 ~E~dE~-F~v~L~~~ 183 (334)
+...|+ |++.+...
T Consensus 95 P~DrEslf~lnv~~I 109 (226)
T PRK15295 95 PADRESMYWLNIKGI 109 (226)
T ss_pred CCCceEEEEEEEEEc
Confidence 877675 88888753
No 13
>PRK15195 fimbrial chaperone protein FimC; Provisional
Probab=54.75 E-value=1.7e+02 Score=26.65 Aligned_cols=90 Identities=8% Similarity=0.155 Sum_probs=59.3
Q ss_pred ceEEEEecceEEEEcCCeEEEEEEEEecCCCceEEEEEEeecCCccCCCCccccceEEEEcCCCeEEEEEEEEeeCCCcc
Q psy11985 92 GARIFFKPQYYTVLENVGEFEVVVAREGDVSGTVTVEYATEDGTAQAGSDYVGAAGKIVFQPGELEQRIRLQVIDDDVFE 171 (334)
Q Consensus 92 ~~~v~F~~~~~~v~E~~g~v~v~V~R~g~~~~~v~V~~~t~~GTA~~g~Dy~~~~g~l~F~~get~k~i~v~IidD~~~E 171 (334)
.+-+.+....+...|+...+.+.|.=.+...--+--.|- .++....-.+|..+.-....+||+. +.++|.-.++.++.
T Consensus 24 ~Agi~i~~TRvIy~~~~~~~si~l~N~~~~~~~LvQsWv-~~~~~~~~~pfivtPPlfrl~p~~~-q~lRIi~~~~~LP~ 101 (229)
T PRK15195 24 AGGIALGATRVIYPADAKQTSLAIRNSHTNERYLVNSWI-ENSSGVKEKSFIVTPPLFVSEPKSE-NTLRIIYAGPPLAA 101 (229)
T ss_pred eeeEEECCeEEEEeCCCceEEEEEEeCCCCccEEEEEEe-cCCCCCccCCEEEcCCeEEECCCCc-eEEEEEECCCCCCC
Confidence 356888888888888877888887543322222222233 3333222247888888999999988 56776666777787
Q ss_pred cCeE-EEEEEecc
Q psy11985 172 EDEY-FFVHLTKV 183 (334)
Q Consensus 172 ~dE~-F~v~L~~~ 183 (334)
..|+ |++.+...
T Consensus 102 DrESlf~Lnv~eI 114 (229)
T PRK15195 102 DRESLFWMNVKAI 114 (229)
T ss_pred CeeEEEEEEeeec
Confidence 7664 88888763
No 14
>PF11943 DUF3460: Protein of unknown function (DUF3460); InterPro: IPR021853 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 70 amino acids in length. This protein has a conserved WDK sequence motif.
Probab=51.11 E-value=13 Score=26.64 Aligned_cols=27 Identities=26% Similarity=0.321 Sum_probs=22.1
Q ss_pred HHHHHHHHHhhhcCCCCCHHHHHHHHH
Q psy11985 16 MNYATTLRELRQMHPNLKMEELEKMAE 42 (334)
Q Consensus 16 ~~~~~~~~~~~~~~p~~~~~~~~~~a~ 42 (334)
.+.-.+|++|+.+||.+..++.++.|-
T Consensus 5 Se~TqFl~~lk~~~Pele~~Q~~GRal 31 (60)
T PF11943_consen 5 SEITQFLNQLKAKHPELEEEQRAGRAL 31 (60)
T ss_pred CHHHHHHHHHHHhCCchHHHHHHhhHH
Confidence 456678999999999998888877654
No 15
>PRK15233 putative fimbrial chaperone protein SefB; Provisional
Probab=50.96 E-value=2.1e+02 Score=26.53 Aligned_cols=89 Identities=6% Similarity=0.064 Sum_probs=61.9
Q ss_pred CceEEEEecceEEEEcCCeEEEEEEEEecCCCceEEEEEEeecCCccCCCCccccceEEEEcCCCeEEEEEEEEeeCCCc
Q psy11985 91 TGARIFFKPQYYTVLENVGEFEVVVAREGDVSGTVTVEYATEDGTAQAGSDYVGAAGKIVFQPGELEQRIRLQVIDDDVF 170 (334)
Q Consensus 91 ~~~~v~F~~~~~~v~E~~g~v~v~V~R~g~~~~~v~V~~~t~~GTA~~g~Dy~~~~g~l~F~~get~k~i~v~IidD~~~ 170 (334)
..+-|.+....+-..|+...+++.|.=.+ ..+.-|.-...++......+|..+.-.....||+. +.++|.-..+.++
T Consensus 38 a~Agi~l~~TRvIy~~~~~~~sl~i~N~~--~~p~LvQsWvd~~~~~~~~pFiVtPPLfRLep~~~-~~lRIi~~~~~LP 114 (246)
T PRK15233 38 KYYGLRLGTTRVIYKEDAPSTSFWIMNEK--EYPILVQTQVYNDDKSSKAPFIVTPPILKVESNAR-TRLKVIPTSNLFN 114 (246)
T ss_pred eeeeEEeCceEEEEeCCCcEEEEEEEcCC--CCcEEEEEEEecCCCCccCCEEECCCeEEECCCCc-eEEEEEECCCCCC
Confidence 45668888888889998888888885433 33333333333433333357888888889999877 6677777788888
Q ss_pred ccCeE-EEEEEec
Q psy11985 171 EEDEY-FFVHLTK 182 (334)
Q Consensus 171 E~dE~-F~v~L~~ 182 (334)
...|+ |++.+..
T Consensus 115 ~DRESlfwlnv~~ 127 (246)
T PRK15233 115 KNEESLYWLCVKG 127 (246)
T ss_pred cCceEEEEEEEEE
Confidence 88776 8888875
No 16
>PRK09926 putative chaperone protein EcpD; Provisional
Probab=47.66 E-value=2.3e+02 Score=26.06 Aligned_cols=88 Identities=14% Similarity=0.183 Sum_probs=57.1
Q ss_pred ceEEEEecceEEEEcCCeEEEEEEEEecCCCceEEEEEEeecCCcc--C---CCCccccceEEEEcCCCeEEEEEEEEee
Q psy11985 92 GARIFFKPQYYTVLENVGEFEVVVAREGDVSGTVTVEYATEDGTAQ--A---GSDYVGAAGKIVFQPGELEQRIRLQVID 166 (334)
Q Consensus 92 ~~~v~F~~~~~~v~E~~g~v~v~V~R~g~~~~~v~V~~~t~~GTA~--~---g~Dy~~~~g~l~F~~get~k~i~v~Iid 166 (334)
.+-|.+.+..+...|+...+.|.|.=.+.. +.-|.-.+.+|... . ..+|..+.-....+||+. +.++|.-..
T Consensus 24 ~A~i~l~~TRvI~~~~~~~~sv~l~N~~~~--p~LvQ~Wvd~~~~~~~p~~~~~pfivtPPl~rl~p~~~-q~lRIi~~~ 100 (246)
T PRK09926 24 IADIVISGTRIIYKSDQKDVNVRLENKGNN--PLLVQSWLDTGDDNAEPGSIKVPFTATPPVSRIDPKRG-QTIKLMYTA 100 (246)
T ss_pred eeeEEeCceEEEEeCCCceEEEEEEeCCCC--cEEEEEEecCCCCccCccccCCCEEEcCCeEEECCCCc-cEEEEEeCC
Confidence 356777777777888877888888544533 33333333443321 1 136888888889999887 566666566
Q ss_pred C-CCcccCe-EEEEEEec
Q psy11985 167 D-DVFEEDE-YFFVHLTK 182 (334)
Q Consensus 167 D-~~~E~dE-~F~v~L~~ 182 (334)
+ .++...| .|++.+..
T Consensus 101 ~~~lP~DrESlf~lnv~e 118 (246)
T PRK09926 101 STALPKDRESVFWFNVLE 118 (246)
T ss_pred CCCCCCCceEEEEEEeee
Confidence 5 6777766 58888876
No 17
>PF08522 DUF1735: Domain of unknown function (DUF1735); InterPro: IPR013728 This domain of unknown function is found in a number of bacterial proteins including acylhydrolases.; PDB: 3POH_A 4DQA_A 3SOT_D 3NQK_A 3N91_A 3P02_A.
Probab=47.33 E-value=56 Score=24.57 Aligned_cols=43 Identities=16% Similarity=0.380 Sum_probs=30.8
Q ss_pred ccccceEEEEcCCCeEEEEEEEEeeCCCcccCeEEEE--EEeccc
Q psy11985 142 YVGAAGKIVFQPGELEQRIRLQVIDDDVFEEDEYFFV--HLTKVK 184 (334)
Q Consensus 142 y~~~~g~l~F~~get~k~i~v~IidD~~~E~dE~F~v--~L~~~~ 184 (334)
|....++++|.+|+....+.|.+-.+...+.+..+.| +|.+..
T Consensus 35 y~l~~~~~~i~aG~~~s~~~i~~~~~~~l~~~~~Y~LPv~i~s~s 79 (86)
T PF08522_consen 35 YTLPNKTVTIPAGETYSTVKITFKPDEKLDPDKKYVLPVRITSVS 79 (86)
T ss_dssp EEESSSEEEEETTCSEEEEEEEEEHTSTCGTTSEEEEEEEEEECS
T ss_pred EEEcCCEEEEcCCCEEEEEEEEEEeCcCCCCCCEEEEEEEEEeCC
Confidence 3334469999999999889999998866666666654 444443
No 18
>PF06382 DUF1074: Protein of unknown function (DUF1074); InterPro: IPR024460 This family consists of several proteins which appear to be specific to Insecta. The function of this family is unknown.
Probab=44.84 E-value=11 Score=32.89 Aligned_cols=45 Identities=24% Similarity=0.301 Sum_probs=35.2
Q ss_pred hhHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHhcCCcceEEEEE
Q psy11985 14 ETMNYATTLRELRQMHPNLKMEELEKMAENEIMKRVPKSRAFYRI 58 (334)
Q Consensus 14 ~r~~~~~~~~~~~~~~p~~~~~~~~~~a~~~~~~~~~~sr~~yri 58 (334)
.+..|+.+|++.+++|.+++.-|+...|+..--.-.+..+.-||=
T Consensus 82 TnnaYLNFLReFRrkh~~L~p~dlI~~AAraW~rLSe~eK~rYrr 126 (183)
T PF06382_consen 82 TNNAYLNFLREFRRKHCGLSPQDLIQRAARAWCRLSEAEKNRYRR 126 (183)
T ss_pred cchHHHHHHHHHHHHccCCCHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 467999999999999999999999999887766555555544443
No 19
>PRK15208 long polar fimbrial chaperone LpfB; Provisional
Probab=41.20 E-value=2.8e+02 Score=25.18 Aligned_cols=89 Identities=8% Similarity=0.180 Sum_probs=57.7
Q ss_pred eEEEEecceEEEEcCCeEEEEEEEEecCCCceEEEEEEeecCCccCCCCccccceEEEEcCCCeEEEEEEEEeeCCCccc
Q psy11985 93 ARIFFKPQYYTVLENVGEFEVVVAREGDVSGTVTVEYATEDGTAQAGSDYVGAAGKIVFQPGELEQRIRLQVIDDDVFEE 172 (334)
Q Consensus 93 ~~v~F~~~~~~v~E~~g~v~v~V~R~g~~~~~v~V~~~t~~GTA~~g~Dy~~~~g~l~F~~get~k~i~v~IidD~~~E~ 172 (334)
+.+.+....+...|+...+.+.|.-.+... +.-|.-.+.++....-.+|..+.-....+||+. +.++|.-..+.++..
T Consensus 21 agv~l~~TRvI~~~~~~~~si~i~N~~~~~-~~LvQsWv~~~~~~~~~pfivtPPl~rl~p~~~-q~lRIi~~~~~lP~D 98 (228)
T PRK15208 21 GGVALSSTRVIYDGSKKEASLTVNNKSKTE-EFLIQSWIDDANGNKKTPFIITPPLFKLDPTKN-NVLRIVNITNTLPQD 98 (228)
T ss_pred ccEEeCceEEEEeCCCceEEEEEEeCCCCC-cEEEEEEEECCCCCccCCEEECCCeEEECCCCc-cEEEEEECCCCCCCC
Confidence 457788888888888788888886444322 222222222332222246888888899999987 666666566777877
Q ss_pred CeE-EEEEEecc
Q psy11985 173 DEY-FFVHLTKV 183 (334)
Q Consensus 173 dE~-F~v~L~~~ 183 (334)
.|+ |++.+...
T Consensus 99 rESlf~lnv~eI 110 (228)
T PRK15208 99 RESVYWINVKAI 110 (228)
T ss_pred eeEEEEEEEEEc
Confidence 665 88888753
No 20
>cd00031 CA Cadherin repeat domain; Cadherins are glycoproteins involved in Ca2+-mediated cell-cell adhesion; these domains occur as repeats in the extracellular regions which are thought to mediate cell-cell contact when bound to calcium; plays a role in cell fate, signalling, proliferation, differentiation, and migration; members include E-, N-, P-, T-, VE-,CNR-,proto-,and FAT-family cadherin, desmocollin, and desmoglein, exists as monomers or dimers (hetero- and homo-); two copies of the repeat are present here
Probab=37.30 E-value=2.5e+02 Score=23.66 Aligned_cols=51 Identities=18% Similarity=0.227 Sum_probs=28.3
Q ss_pred cccCeEEEEEEecccCcccc--CCcceEEEEecC-CCCCccceeceEEEEeccc
Q psy11985 170 FEEDEYFFVHLTKVKDAKLV--APSSATVMILDD-DHAGSFGFLETSVTIAESV 220 (334)
Q Consensus 170 ~E~dE~F~v~L~~~~~~~~~--~~~~~~vtI~dd-d~~~~~~f~~~~~~v~E~~ 220 (334)
+|....|.+.+.....+... .....+|.|.|- |..|.|......+.+.|+.
T Consensus 62 ~e~~~~~~l~v~a~D~g~~~~~~~~~v~I~V~d~Nd~~P~~~~~~~~~~v~e~~ 115 (199)
T cd00031 62 REEQSEYTLTVVASDGGGPPLSSTATVTVTVLDVNDNPPVFEQSSYEASVPENA 115 (199)
T ss_pred CcCCceEEEEEEEEECCcCcceeEEEEEEEEccCCCCCCcccccceEEEEeCCC
Confidence 45545666555543322221 345667888885 4466666556666676654
No 21
>PRK15246 fimbrial assembly chaperone StbE; Provisional
Probab=36.99 E-value=3.3e+02 Score=24.86 Aligned_cols=88 Identities=16% Similarity=0.286 Sum_probs=57.5
Q ss_pred eEEEEecceEEEEcCCeEEEEEEEEecCCCceEEEEEEeecCC--ccC---CCCccccceEEEEcCCCeEEEEEEEEee-
Q psy11985 93 ARIFFKPQYYTVLENVGEFEVVVAREGDVSGTVTVEYATEDGT--AQA---GSDYVGAAGKIVFQPGELEQRIRLQVID- 166 (334)
Q Consensus 93 ~~v~F~~~~~~v~E~~g~v~v~V~R~g~~~~~v~V~~~t~~GT--A~~---g~Dy~~~~g~l~F~~get~k~i~v~Iid- 166 (334)
+-|......+...|+...+.|+|.=.+.. +.-|.-.+.+|. +.. ..+|..+.-.....||+. +.++|.-..
T Consensus 10 A~v~l~~TRvI~~~~~~~~sv~l~N~~~~--p~LvQsWvd~~~~~~~p~~~~~pFivtPPlfrl~~~~~-~~lRI~~~~~ 86 (233)
T PRK15246 10 AAVNIDRTRIIFASDDVAQSLTLSNDNTT--PMLLQVWTDAGNIDASPDNSKTPLVALPPVFKMQPGEL-RTLRLLLSSR 86 (233)
T ss_pred EEEEECceEEEEcCCCceEEEEEEeCCCC--cEEEEEEEeCCCCccCcccccCcEEECCcceEECCCCc-eEEEEEECCC
Confidence 55777777778888878888888544433 433333334443 222 236888888888888876 666666664
Q ss_pred CCCcccCeE-EEEEEecc
Q psy11985 167 DDVFEEDEY-FFVHLTKV 183 (334)
Q Consensus 167 D~~~E~dE~-F~v~L~~~ 183 (334)
+.++...|+ |++.+...
T Consensus 87 ~~LP~DRESlf~lnv~~I 104 (233)
T PRK15246 87 QQLATDRESLFWLNIYQI 104 (233)
T ss_pred CCCCCCceEEEEEEEEEc
Confidence 568877775 88888763
No 22
>PRK15218 fimbrial chaperone protein PegB; Provisional
Probab=35.01 E-value=3.5e+02 Score=24.58 Aligned_cols=89 Identities=9% Similarity=0.218 Sum_probs=58.7
Q ss_pred ceEEEEecceEEEEcCCeEEEEEEEEecCCCceEEEEEEeecC--CccC---CCCccccceEEEEcCCCeEEEEEEEEee
Q psy11985 92 GARIFFKPQYYTVLENVGEFEVVVAREGDVSGTVTVEYATEDG--TAQA---GSDYVGAAGKIVFQPGELEQRIRLQVID 166 (334)
Q Consensus 92 ~~~v~F~~~~~~v~E~~g~v~v~V~R~g~~~~~v~V~~~t~~G--TA~~---g~Dy~~~~g~l~F~~get~k~i~v~Iid 166 (334)
.+-|.+....+-..|+...++++|.=.+.. +.-|.-...+| .+.. ...|..+.-.....||+. +.++|.-..
T Consensus 17 ~Agi~l~~TRvIy~~~~~~~si~i~N~~~~--pyLvQsWvd~~~~~~~~~~~~~pFivtPPlfRl~p~~~-~~lRI~~~~ 93 (226)
T PRK15218 17 WSGIYIYGTRIIYPAQKKDITVQLMNDGKR--SSLIQAWIDNGDTSLPPEKLQVPFIMTPPVIRVAANSG-QQLKIKKLA 93 (226)
T ss_pred eeeEEeCceEEEEcCCCcEEEEEEEcCCCC--cEEEEEEEeCCCCCCCcccccCCEEECCCeEEECCCCc-eEEEEEECC
Confidence 356788888888888888888888544433 33333333343 2221 136887888888888877 666666667
Q ss_pred CCCcccCe-EEEEEEecc
Q psy11985 167 DDVFEEDE-YFFVHLTKV 183 (334)
Q Consensus 167 D~~~E~dE-~F~v~L~~~ 183 (334)
+.++...| -|++.+...
T Consensus 94 ~~LP~DRESlfwlnv~~I 111 (226)
T PRK15218 94 NNLPGDRESLFYLNVLDI 111 (226)
T ss_pred CCCCcceeEEEEEEEEEc
Confidence 88888766 577887753
No 23
>PRK15249 fimbrial chaperone protein StbB; Provisional
Probab=33.73 E-value=3.9e+02 Score=24.69 Aligned_cols=88 Identities=13% Similarity=0.178 Sum_probs=57.6
Q ss_pred ceEEEEecceEEEEcCCeEEEEEEEEecCCCceEEEEEEeecCCccC------CCCccccceEEEEcCCCeEEEEEEEEe
Q psy11985 92 GARIFFKPQYYTVLENVGEFEVVVAREGDVSGTVTVEYATEDGTAQA------GSDYVGAAGKIVFQPGELEQRIRLQVI 165 (334)
Q Consensus 92 ~~~v~F~~~~~~v~E~~g~v~v~V~R~g~~~~~v~V~~~t~~GTA~~------g~Dy~~~~g~l~F~~get~k~i~v~Ii 165 (334)
.+.|.+.+..+...|+...+.|.+.=.+.. +.-|.-.+.+|.... ..+|....-....+||+. +.++|.-.
T Consensus 27 ~A~l~l~~TRviy~~~~~~~sl~l~N~~~~--p~LvQsWv~~~~~~~~p~~~~~~pFivtPPlfrl~p~~~-q~lRI~~~ 103 (253)
T PRK15249 27 WASVTILGSRIIYPSTASSVDVQLKNNDAI--PYIVQTWFDDGDMNTSPENSSAMPFIATPPVFRIQPKAG-QVVRVIYN 103 (253)
T ss_pred eeEEEeCceEEEEeCCCcceeEEEEcCCCC--cEEEEEEEeCCCCCCCccccccCcEEEcCCeEEecCCCc-eEEEEEEc
Confidence 456788888888888877777888433432 444433334443221 135888888899999987 56666666
Q ss_pred eC-CCcccCeE-EEEEEec
Q psy11985 166 DD-DVFEEDEY-FFVHLTK 182 (334)
Q Consensus 166 dD-~~~E~dE~-F~v~L~~ 182 (334)
++ .++...|+ |++.+..
T Consensus 104 ~~~~lP~DRESlf~lnv~e 122 (253)
T PRK15249 104 NTKKLPQDRESVFWFNVLQ 122 (253)
T ss_pred CCCCCCCCceEEEEEEeee
Confidence 64 67777665 8887775
No 24
>PF15416 DUF4623: Domain of unknown function (DUF4623)
Probab=30.84 E-value=5.2e+02 Score=25.34 Aligned_cols=208 Identities=14% Similarity=0.130 Sum_probs=105.4
Q ss_pred EEEcCCeEEEEEEEEecCCCceEEEEEEeecCCccCCCCccccceEEEEcCCCeEEEEEEEEeeCCCcccCeEEEEEEec
Q psy11985 103 TVLENVGEFEVVVAREGDVSGTVTVEYATEDGTAQAGSDYVGAAGKIVFQPGELEQRIRLQVIDDDVFEEDEYFFVHLTK 182 (334)
Q Consensus 103 ~v~E~~g~v~v~V~R~g~~~~~v~V~~~t~~GTA~~g~Dy~~~~g~l~F~~get~k~i~v~IidD~~~E~dE~F~v~L~~ 182 (334)
++.|+..+++++-.-...-...+.+.-...+|....-. .--++|.+++++|++-+.|++-.-|.+ --..|++.-
T Consensus 34 tidE~~K~inFPRld~~TnFsaL~~EA~LS~GA~L~~~-----v~d~sm~e~~~~Ktlvlrv~N~~RYke-Y~~kvRkkv 107 (442)
T PF15416_consen 34 TIDEDNKTINFPRLDVETNFSALKFEAELSDGATLQKE-----VYDFSMDEETSEKTLVLRVLNHKRYKE-YFVKVRKKV 107 (442)
T ss_pred EEcCcCceecccccccccCccceeeEEecCCCcccccc-----eecceecCCccceEEEEEEecCchHHH-HHHhhhhcC
Confidence 46666666655432222223445555455555443222 224689999999999999998665532 112455555
Q ss_pred ccCccccCCcceEEEEecCCCCCccceeceEEEE---------ecccceEEEeeeeecceEEEeccCCeeecCCceEEEE
Q psy11985 183 VKDAKLVAPSSATVMILDDDHAGSFGFLETSVTI---------AESVGIVKELWSTRHGVVHLTKVKDAKLVAPSSATVM 253 (334)
Q Consensus 183 ~~~~~~~~~~~~~vtI~ddd~~~~~~f~~~~~~v---------~E~~G~v~v~~~~~~~~v~l~~~~~~~lg~~~~atVt 253 (334)
|..|+--.. .-+..|+.....- ..=+|.--+-+++.+....|...+...-|..+..-+-
T Consensus 108 Pv~GAdFe~------------pTvY~Fsgd~iY~~f~~~lTR~a~fDGe~VLvvsR~~~~pHLLkvsdLK~g~inpI~Ld 175 (442)
T PF15416_consen 108 PVFGADFEK------------PTVYDFSGDNIYDDFAGLLTRCASFDGEHVLVVSRGTTKPHLLKVSDLKAGEINPIPLD 175 (442)
T ss_pred CccccccCC------------CceEeccCCccchhhhhhhhcccCCCCcEEEEEecCCCCceeeehhHhhcCCccceeee
Confidence 665541110 1122333221100 0113444444555444445544444444543332232
Q ss_pred EeCCCCCceEEEeeceEEEEeeeeEEEEEEEEecCCCccEEEEEEecCCC-----------------ccCCCCccc----
Q psy11985 254 ILDDDHAGSFGFLETSVTIAESVGMYELEVLRSCGARGTVEVGYKTYDDT-----------------AKAGTHYVQ---- 312 (334)
Q Consensus 254 I~ddd~~g~~~F~~~~~~V~E~~g~v~v~V~R~~g~~g~v~V~~~t~~gt-----------------A~~g~Dy~~---- 312 (334)
+..- ..|+|....... .+|.+.+ -..+|+...++.+.|+...-+ +..|..+..
T Consensus 176 lTgV-tgGTf~yNmgAl----~nGH~Y~-asLSG~~~SPLKiY~w~tPts~PevIa~inV~~I~gAg~RhGDn~S~nlD~ 249 (442)
T PF15416_consen 176 LTGV-TGGTFSYNMGAL----VNGHSYL-ASLSGGKASPLKIYYWETPTSAPEVIADINVGDIPGAGNRHGDNFSLNLDE 249 (442)
T ss_pred cccc-cCcccccchhhh----cCCeEEE-EeccCCCCCceEEEEecCCCCCceEEEeeeeccCcccccccCcceeEEecc
Confidence 2221 126666654321 1333322 235666667777776643332 112322221
Q ss_pred -cceEEEEcCCCeEEEEEEEeeC
Q psy11985 313 -TEGALIFHNEETSYFYNRRSVD 334 (334)
Q Consensus 313 -~~g~ltF~~ge~~k~i~I~Iid 334 (334)
.+|-+.|.++-..+.++++|-|
T Consensus 250 nGnGyiFFgdnaat~ilR~~vsn 272 (442)
T PF15416_consen 250 NGNGYIFFGDNAATNILRFTVSN 272 (442)
T ss_pred CCceEEEecCCccceEEEEEccC
Confidence 5799999999999999998743
No 25
>PRK09918 putative fimbrial chaperone protein; Provisional
Probab=29.98 E-value=4.2e+02 Score=23.98 Aligned_cols=88 Identities=15% Similarity=0.113 Sum_probs=58.0
Q ss_pred ceEEEEecceEEEEcCCeEEEEEEEEecCCCceEEEEEEeecCCccCCCCccccceEEEEcCCCeEEEEEEEEeeCCCcc
Q psy11985 92 GARIFFKPQYYTVLENVGEFEVVVAREGDVSGTVTVEYATEDGTAQAGSDYVGAAGKIVFQPGELEQRIRLQVIDDDVFE 171 (334)
Q Consensus 92 ~~~v~F~~~~~~v~E~~g~v~v~V~R~g~~~~~v~V~~~t~~GTA~~g~Dy~~~~g~l~F~~get~k~i~v~IidD~~~E 171 (334)
.+.+.+....+...++.....++|.=.+. .+..|.-.+.++......+|..+.-.+..+||+.. .++|.-.+ ..+.
T Consensus 23 ~a~v~l~~tRvi~~~~~~~~si~v~N~~~--~p~lvQ~wv~~~~~~~~~~fivtPPl~rl~pg~~q-~vRii~~~-~lp~ 98 (230)
T PRK09918 23 AAGMVPETSVVIVEESDGEGSINVKNTDS--NPILLYTTLVDLPEDKSKLLLVTPPVARVEPGQSQ-QVRFILKS-GSPL 98 (230)
T ss_pred EeeEEEccEEEEEECCCCeEEEEEEcCCC--CcEEEEEEEecCCCCCCCCEEEcCCeEEECCCCce-EEEEEECC-CCCC
Confidence 35677778888888888888888853343 34444333444332234689888889999999884 66655555 4565
Q ss_pred cCe-EEEEEEecc
Q psy11985 172 EDE-YFFVHLTKV 183 (334)
Q Consensus 172 ~dE-~F~v~L~~~ 183 (334)
..| .|++.+...
T Consensus 99 drEs~f~l~v~~I 111 (230)
T PRK09918 99 NTEHLLRVSFEGV 111 (230)
T ss_pred CeeEEEEEEEEEc
Confidence 544 588888763
No 26
>PF09164 VitD-bind_III: Vitamin D binding protein, domain III; InterPro: IPR015247 This domain is predominantly found in Vitamin D binding proteins, and adopts a multihelical structure. It is required for formation of an actin 'clamp', allowing the protein to bind to actin []. ; PDB: 1MA9_A 1KW2_A 1KXP_D 1J7E_A 1J78_A 1LOT_A.
Probab=29.92 E-value=83 Score=23.00 Aligned_cols=32 Identities=22% Similarity=0.219 Sum_probs=21.2
Q ss_pred HhhHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHh
Q psy11985 13 NETMNYATTLRELRQMHPNLKMEELEKMAENEIMK 47 (334)
Q Consensus 13 ~~r~~~~~~~~~~~~~~p~~~~~~~~~~a~~~~~~ 47 (334)
|.++++.. .||++.|+++.++|+.|...+.-|
T Consensus 13 EyKKrL~e---~l~~k~P~at~~~l~~lve~RsdF 44 (68)
T PF09164_consen 13 EYKKRLAE---RLRAKLPDATPTELKELVEKRSDF 44 (68)
T ss_dssp HHHHHHHH---HHHHH-TTS-HHHHHHHHHHHHHH
T ss_pred HHHHHHHH---HHHHHCCCCCHHHHHHHHHHHhhH
Confidence 44444444 456678999999999998877654
No 27
>KOG0416|consensus
Probab=29.42 E-value=97 Score=27.04 Aligned_cols=63 Identities=25% Similarity=0.313 Sum_probs=41.9
Q ss_pred EEEEEeeCCCcccCeEEEEEEecccCcc-ccCCcceEEEEecC--CCCCccceeceEEE--EecccceEEEe
Q psy11985 160 IRLQVIDDDVFEEDEYFFVHLTKVKDAK-LVAPSSATVMILDD--DHAGSFGFLETSVT--IAESVGIVKEL 226 (334)
Q Consensus 160 i~v~IidD~~~E~dE~F~v~L~~~~~~~-~~~~~~~~vtI~dd--d~~~~~~f~~~~~~--v~E~~G~v~v~ 226 (334)
-.|++++|..-| |+|++..|.... .|+-=.+.|..-|+ =..|+++|....|+ |+|..|.|-+.
T Consensus 20 yeV~~ind~m~e----f~V~f~GP~ds~YegGvWkv~V~lPd~YP~KSPSIGFvnKIfHPNIDe~SGsVCLD 87 (189)
T KOG0416|consen 20 YEVTIINDGMQE----FYVKFHGPKDSPYEGGVWKVRVELPDNYPFKSPSIGFVNKIFHPNIDEASGSVCLD 87 (189)
T ss_pred CeEEEecCcccE----EEEEeeCCCCCcccCceEEEEEECCCCCCCCCCcccceeeccCCCchhccCccHHH
Confidence 357888876654 999999887643 23333444544444 13689999998885 66888886443
No 28
>PF11476 TgMIC1: Toxoplasma gondii micronemal protein 1 TgMIC1; InterPro: IPR024691 MIC1 is released as part of a complex by Toxoplasma gondii prior to invasion. The complex, which consists of MIC4-MIC1-MIC6, participates in host cell attachment and penetration, and is critical in invasion. This entry represents the C-terminal domain of MIC1, which has a galectin-like fold that interacts with and stabilises MIC6, providing a mechanism for an exit from the early secretory compartments and trafficking of the complex to micronemes [].; PDB: 2BVB_A 2K2S_A.
Probab=28.88 E-value=3.2e+02 Score=22.17 Aligned_cols=55 Identities=25% Similarity=0.213 Sum_probs=30.1
Q ss_pred eecCCceEEEEEeCCCCCceEEEeec------eEEEEeeeeEEEEEEEEecCCCccEEEEEEecC
Q psy11985 243 KLVAPSSATVMILDDDHAGSFGFLET------SVTIAESVGMYELEVLRSCGARGTVEVGYKTYD 301 (334)
Q Consensus 243 ~lg~~~~atVtI~ddd~~g~~~F~~~------~~~V~E~~g~v~v~V~R~~g~~g~v~V~~~t~~ 301 (334)
.+|.+-..++..+| +-+.|... .+.++|..|...+++-.-..-+-.|..+|.+.+
T Consensus 31 ~vgsch~l~~nf~d----~~l~f~t~s~s~~d~ve~~~~ag~~~ltiglg~~gr~~vv~~y~~~~ 91 (137)
T PF11476_consen 31 SVGSCHSLTVNFSD----YFLSFQTTSNSGFDEVEVDDPAGPGELTIGLGHSGRVTVVFQYTRNN 91 (137)
T ss_dssp EECTTEEEEEETTT----TEEEEESSSSSS-EEEE---EEEEEEEEEEESSSS-EEEEEEEEETT
T ss_pred Eecchhheeehhcc----ceEEeecCCCCccceEEeccCCCceeEEEecCCCceEEEEEEeeccC
Confidence 45666444444433 56777653 467788888888888764444444555565543
No 29
>cd00407 Urease_beta Urease beta-subunit; Urease is a nickel-dependent metalloenzyme that catalyzes the hydrolysis of urea to form ammonia and carbon dioxide. Nickel-dependent ureases are found in bacteria, archaea, fungi and plants. Their primary role is to allow the use of external and internally-generated urea as a nitrogen source. The enzyme consists of three subunits, alpha, beta and gamma, which can exist as separate proteins or can be fused on a single protein chain. The alpha-beta-gamma heterotrimer forms multimers, mainly trimers. The large alpha subunit is the catalytic domain containing an active site with a bi-nickel center complexed by a carbamylated lysine. The beta and gamma subunits play a role in subunit association to form the higher order trimers.
Probab=26.00 E-value=2.7e+02 Score=22.12 Aligned_cols=70 Identities=14% Similarity=0.081 Sum_probs=0.0
Q ss_pred CceEEEeeceEEEEeeeeEEEEEEEEecCCCccEEEEEEecCCC---------ccCCCCccccceEEEEcCCCeEEEEEE
Q psy11985 260 AGSFGFLETSVTIAESVGMYELEVLRSCGARGTVEVGYKTYDDT---------AKAGTHYVQTEGALIFHNEETSYFYNR 330 (334)
Q Consensus 260 ~g~~~F~~~~~~V~E~~g~v~v~V~R~~g~~g~v~V~~~t~~gt---------A~~g~Dy~~~~g~ltF~~ge~~k~i~I 330 (334)
||-+.+....+..+++-..+++.|.-+|+---+|-=.|.-.+-. |..-.==.+....+-|+||++ |++++
T Consensus 3 PGei~~~~~~I~lN~gr~~~~l~V~NtGDRpIQVGSH~HF~E~N~aL~FDR~~A~G~RLdIpaGTavRFEPG~~-k~V~L 81 (101)
T cd00407 3 PGEIILKEGDIELNAGREAVTLKVKNTGDRPIQVGSHYHFFEVNPALKFDREKAYGMRLDIPAGTAVRFEPGEE-KEVEL 81 (101)
T ss_pred CceEEeCCCCeEeCCCCCEEEEEEEeCCCcceEEccccchhhcCccccccHHHcccceecccCCCeEEECCCCe-EEEEE
No 30
>TIGR02588 conserved hypothetical protein TIGR02588. The function of this protein is unknown. It is always found as part of a two-gene operon with TIGR02587, a protein that appears to span the membrane seven times. It is found in Nostoc sp. PCC 7120, Agrobacterium tumefaciens, Sinorhizobium meliloti, and Gloeobacter violaceus, so far, all of which are bacterial.
Probab=23.61 E-value=4.2e+02 Score=21.83 Aligned_cols=77 Identities=14% Similarity=0.186 Sum_probs=42.0
Q ss_pred eCCCCCceEEEeeceEEEEeeeeE--EEEEEEEecCC-CccEEEEEEecCC-----CccCCCCccc----cceEEEEcCC
Q psy11985 255 LDDDHAGSFGFLETSVTIAESVGM--YELEVLRSCGA-RGTVEVGYKTYDD-----TAKAGTHYVQ----TEGALIFHNE 322 (334)
Q Consensus 255 ~ddd~~g~~~F~~~~~~V~E~~g~--v~v~V~R~~g~-~g~v~V~~~t~~g-----tA~~g~Dy~~----~~g~ltF~~g 322 (334)
...+.+|.+.-.... ...+..|. +.+.|.-+||. .-.|.|.=.-.++ ++..-.||.+ .+|.+.|.++
T Consensus 28 ~~~~~pp~l~v~~~~-~~r~~~gqyyVpF~V~N~gg~TAasV~V~geL~~~~~v~E~~e~tiDfl~g~e~~~G~~IF~~d 106 (122)
T TIGR02588 28 RYSNKAAVLEVAPAE-VERMQTGQYYVPFAIHNLGGTTAAAVNIRGELRQAGAVVENAEVTIDYLASGSKENGTLIFRSD 106 (122)
T ss_pred ccCCCCCeEEEeehh-eeEEeCCEEEEEEEEEeCCCcEEEEEEEEEEEccCCceeEEeeEEEEEcCCCCeEeEEEEEccC
Confidence 344556666544432 23334443 44444433332 2334444443333 2333468987 5799999999
Q ss_pred CeEEEEEEEe
Q psy11985 323 ETSYFYNRRS 332 (334)
Q Consensus 323 e~~k~i~I~I 332 (334)
-....+.|.+
T Consensus 107 P~~g~L~irv 116 (122)
T TIGR02588 107 PRNGQLRLRV 116 (122)
T ss_pred cccCeEEEEE
Confidence 8877776654
No 31
>PF03659 Glyco_hydro_71: Glycosyl hydrolase family 71 ; InterPro: IPR005197 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of alpha-1,3-glucanases belonging to glycoside hydrolase family 71 (GH71 from CAZY).
Probab=22.64 E-value=5.9e+02 Score=25.12 Aligned_cols=33 Identities=24% Similarity=0.352 Sum_probs=21.3
Q ss_pred CceEEEEEEeecCCccCCCCccc---cceEEEEcCC
Q psy11985 122 SGTVTVEYATEDGTAQAGSDYVG---AAGKIVFQPG 154 (334)
Q Consensus 122 ~~~v~V~~~t~~GTA~~g~Dy~~---~~g~l~F~~g 154 (334)
...+.+.|++.+.+|.+..|-.. ..+...+.|+
T Consensus 281 ~d~l~~wyR~~p~~a~~~~~t~~n~~~~~q~~~~P~ 316 (386)
T PF03659_consen 281 RDVLYYWYRTHPASACASGDTTGNTASQGQQEMRPS 316 (386)
T ss_pred ccEEEEEEecCccccccCCCccCCcccccccccCCc
Confidence 36688999999988776666655 2234444444
No 32
>PRK15188 fimbrial chaperone protein BcfB; Provisional
Probab=20.41 E-value=6.6e+02 Score=22.87 Aligned_cols=89 Identities=9% Similarity=0.181 Sum_probs=55.8
Q ss_pred eEEEEecceEEEEcCCeEEEEEEEEecCCCceEEEEEEeecCCccCCCCccccceEEEEcCCCeEEEEEEEEeeCCCccc
Q psy11985 93 ARIFFKPQYYTVLENVGEFEVVVAREGDVSGTVTVEYATEDGTAQAGSDYVGAAGKIVFQPGELEQRIRLQVIDDDVFEE 172 (334)
Q Consensus 93 ~~v~F~~~~~~v~E~~g~v~v~V~R~g~~~~~v~V~~~t~~GTA~~g~Dy~~~~g~l~F~~get~k~i~v~IidD~~~E~ 172 (334)
+.|.+....+...|+...+.+++.=.+...--+.-.| +.++....-.+|..+.-....+||+. +.++|.-..+.++..
T Consensus 27 Agi~l~~TRvIy~~~~~~~sv~i~N~~~~~p~LvQsW-v~~~~~~~~~pFivtPPlfrl~~~~~-~~lRI~~~~~~lP~D 104 (228)
T PRK15188 27 GGIALGATRVIYPQGSKQTSLPIINSSASNVFLIQSW-VANADGSRSTDFIITPPLFVIQPKKE-NILRIMYVGPSLPTD 104 (228)
T ss_pred ceEEECcEEEEEcCCCceEEEEEEeCCCCccEEEEEE-EecCCCCccCCEEEcCCeEEECCCCc-eEEEEEECCCCCCCC
Confidence 4577777777777777777777754332211121122 22222222247888888899999887 667766667778777
Q ss_pred Ce-EEEEEEecc
Q psy11985 173 DE-YFFVHLTKV 183 (334)
Q Consensus 173 dE-~F~v~L~~~ 183 (334)
.| -|++.+...
T Consensus 105 RESlf~lnv~~I 116 (228)
T PRK15188 105 RESVFYLNSKAI 116 (228)
T ss_pred ceEEEEEEEEec
Confidence 65 678888753
Done!