RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11985
(334 letters)
>3ead_A Na/Ca exchange protein; CBD1, calcium regulation, membrane,
transmembrane, membrane; 2.25A {Drosophila melanogaster}
Length = 137
Score = 155 bits (393), Expect = 3e-47
Identities = 74/131 (56%), Positives = 91/131 (69%), Gaps = 1/131 (0%)
Query: 94 RIFFKPQYYTVLENVGEFEVVVAREGDVSGTVTVEYATEDGTAQAGSDYVGAAGKIVFQP 153
R++F+P +YTV+EN GEFEV V R GD+S +VEY T+DGTA AG+D+VG G + F P
Sbjct: 6 RMYFEPGHYTVMENCGEFEVRVVRRGDISTYASVEYETQDGTASAGTDFVGRKGLLSFPP 65
Query: 154 GELEQRIRLQVIDDDVFEEDEYFFVHLTKVK-DAKLVAPSSATVMILDDDHAGSFGFLET 212
G EQR R++VIDDDVFEEDE F++ L KL P ATVMILDDDHAG F F ++
Sbjct: 66 GVDEQRFRIEVIDDDVFEEDECFYIRLFNPSEGVKLAVPMIATVMILDDDHAGIFAFTDS 125
Query: 213 SVTIAESVGIV 223
I ESVG
Sbjct: 126 VFEITESVGRF 136
Score = 63.1 bits (154), Expect = 1e-12
Identities = 21/68 (30%), Positives = 29/68 (42%)
Query: 258 DHAGSFGFLETSVTIAESVGMYELEVLRSCGARGTVEVGYKTYDDTAKAGTHYVQTEGAL 317
D F T+ E+ G +E+ V+R V Y+T D TA AGT +V +G L
Sbjct: 2 DDPIRMYFEPGHYTVMENCGEFEVRVVRRGDISTYASVEYETQDGTASAGTDFVGRKGLL 61
Query: 318 IFHNEETS 325
F
Sbjct: 62 SFPPGVDE 69
>3rb5_A Na/Ca exchange protein; CBD12, calcium binding and regulation,
metal binding protein; 2.35A {Drosophila melanogaster}
PDB: 3rb7_A 3e9u_A
Length = 298
Score = 156 bits (395), Expect = 1e-45
Identities = 99/237 (41%), Positives = 123/237 (51%), Gaps = 55/237 (23%)
Query: 93 ARIFFKPQYYTVLENVGEFEVVVAREGDVSGTVTVEYATEDGTAQAGSDYVGAAGKIVFQ 152
R++F+P +YTV+EN GEFEV V R GD+S +VEY T+DGTA AG+D+VG G + F
Sbjct: 10 IRMYFEPGHYTVMENCGEFEVRVVRRGDISTYASVEYETQDGTASAGTDFVGRKGLLSFP 69
Query: 153 PGELEQRIRLQVIDDDVFEEDEYFFVHLTKVKDAKLVAPSSATVMILDDDHAGSFGFLET 212
PG EQR R++VIDDDVFEEDE F++ L PS
Sbjct: 70 PGVDEQRFRIEVIDDDVFEEDECFYIR--------LFNPSEG------------------ 103
Query: 213 SVTIAESVGIVKELWSTRHGVVHLTKVKDAKLVAPSSATVMILDDDHAGSFGFLETSVTI 272
KL P ATVMILDDDHAG F F ++ I
Sbjct: 104 -----------------------------VKLAVPMIATVMILDDDHAGIFAFTDSVFEI 134
Query: 273 AESVGMYELEVLRSCGARGTVEVGYKTYDDTAKAGTHYVQTEGALIFHNEETSYFYN 329
ESVG +EL+V+R GARGTV V Y T +DTA Y G L+F N E+ F +
Sbjct: 135 TESVGRFELKVMRYSGARGTVIVPYWTENDTATESKDYEGARGELVFENNESEKFID 191
Score = 106 bits (266), Expect = 8e-27
Identities = 36/125 (28%), Positives = 63/125 (50%), Gaps = 1/125 (0%)
Query: 95 IFFKPQYYTVLENVGEFEVVVAREGDVSGTVTVEYATEDGTAQAGSDYVGAAGKIVFQPG 154
F + + E+VG FE+ V R GTV V Y TE+ TA DY GA G++VF+
Sbjct: 125 FAFTDSVFEITESVGRFELKVMRYSGARGTVIVPYWTENDTATESKDYEGARGELVFENN 184
Query: 155 ELEQRIRLQVIDDDVFEEDEYFFVHLTKVKDAKLVAPSSATVMILDDDHAGSFGFLETSV 214
E E+ I L ++++ +E+D F VH+ + + A +A + ++ L+ +
Sbjct: 185 ESEKFIDLFILEESSYEKDVSFKVHIGEPRLAPD-DELAAKIKEVEKKPVQDLTELDRIL 243
Query: 215 TIAES 219
+++
Sbjct: 244 LLSKP 248
Score = 64.6 bits (157), Expect = 5e-12
Identities = 21/70 (30%), Positives = 30/70 (42%)
Query: 256 DDDHAGSFGFLETSVTIAESVGMYELEVLRSCGARGTVEVGYKTYDDTAKAGTHYVQTEG 315
+ D F T+ E+ G +E+ V+R V Y+T D TA AGT +V +G
Sbjct: 5 EADDPIRMYFEPGHYTVMENCGEFEVRVVRRGDISTYASVEYETQDGTASAGTDFVGRKG 64
Query: 316 ALIFHNEETS 325
L F
Sbjct: 65 LLSFPPGVDE 74
>3us9_A Sodium/calcium exchanger 1; beta-sandwich, calcium binding protein,
intracellular, metal protein; 2.68A {Canis lupus
familiaris} PDB: 2klt_A
Length = 295
Score = 151 bits (382), Expect = 8e-44
Identities = 89/239 (37%), Positives = 123/239 (51%), Gaps = 40/239 (16%)
Query: 93 ARIFFKPQYYTVLENVGEFEVVVARE-GDVSGTVTVEYATEDGTAQAGSDYVGAAGKIVF 151
++IFF+ Y LEN G + + R GD++ TV V++ TEDGTA AGSDY G +VF
Sbjct: 10 SKIFFEQGTYQCLENCGTVALTIIRRGGDLTNTVFVDFRTEDGTANAGSDYEFTEGTVVF 69
Query: 152 QPGELEQRIRLQVIDDDVFEEDEYFFVHLTKVKDAKLVAPSSATVMILDDDHAGSFGFLE 211
+PGE ++ IR+ +IDDD+FEED+ F VHL+ VK + +
Sbjct: 70 KPGETQKEIRVGIIDDDIFEEDKNFLVHLSNVKVSSEASEDGILEANHVSA--------- 120
Query: 212 TSVTIAESVGIVKELWSTRHGVVHLTKVKDAKLVAPSSATVMILDDDHAGSFGFLETSVT 271
A L +PS+ATV I DDDHAG F F E
Sbjct: 121 -----------------------------LACLGSPSTATVTIFDDDHAGIFTFEEPVTH 151
Query: 272 IAESVGMYELEVLRSCGARGTVEVGYKTYDDTAK-AGTHYVQTEGALIFHNEETSYFYN 329
++ES+G+ E++VLR+ GARG V V YKT + TA+ G + T G L F N+E +
Sbjct: 152 VSESIGIMEVKVLRTSGARGNVIVPYKTIEGTARGGGEDFEDTCGELEFQNDEIVKTIS 210
Score = 109 bits (273), Expect = 7e-28
Identities = 37/131 (28%), Positives = 62/131 (47%), Gaps = 2/131 (1%)
Query: 95 IFFKPQYYTVLENVGEFEVVVAREGDVSGTVTVEYATEDGTAQ-AGSDYVGAAGKIVFQP 153
F+ V E++G EV V R G V V Y T +GTA+ G D+ G++ FQ
Sbjct: 143 FTFEEPVTHVSESIGIMEVKVLRTSGARGNVIVPYKTIEGTARGGGEDFEDTCGELEFQN 202
Query: 154 GELEQRIRLQVIDDDVFEEDEYFFVHLTKVKDAKLV-APSSATVMILDDDHAGSFGFLET 212
E+ + I ++VIDD+ +E+++ FF+ + + + ++ T+ DD E
Sbjct: 203 DEIVKTISVKVIDDEEYEKNKTFFLEIGEPRLVEMSEKKGGFTITEEYDDKQPLTSKEEE 262
Query: 213 SVTIAESVGIV 223
IAE +
Sbjct: 263 ERRIAEMGRPI 273
Score = 61.2 bits (148), Expect = 7e-11
Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
Query: 256 DDDHAGSFGFLETSVTIAESVGMYELEVLRSCGA-RGTVEVGYKTYDDTAKAGTHYVQTE 314
H F + + E+ G L ++R G TV V ++T D TA AG+ Y TE
Sbjct: 5 HHHHVSKIFFEQGTYQCLENCGTVALTIIRRGGDLTNTVFVDFRTEDGTANAGSDYEFTE 64
Query: 315 GALIFHNEETS 325
G ++F ET
Sbjct: 65 GTVVFKPGETQ 75
>3e9t_A Na/Ca exchange protein; CBD1, CALX, membrane, transmembrane,
membrane protein; 1.60A {Drosophila melanogaster}
Length = 114
Score = 141 bits (357), Expect = 3e-42
Identities = 65/112 (58%), Positives = 80/112 (71%), Gaps = 1/112 (0%)
Query: 93 ARIFFKPQYYTVLENVGEFEVVVAREGDVSGTVTVEYATEDGTAQAGSDYVGAAGKIVFQ 152
R++F+P +YTV+EN GEFEV V R GD+S +VEY T+DGTA AG+D+VG G + F
Sbjct: 3 IRMYFEPGHYTVMENCGEFEVRVVRRGDISTYASVEYETQDGTASAGTDFVGRKGLLSFP 62
Query: 153 PGELEQRIRLQVIDDDVFEEDEYFFVHLTKVK-DAKLVAPSSATVMILDDDH 203
PG EQR R++VIDDDVFEEDE F++ L KL P ATVMILDDDH
Sbjct: 63 PGVDEQRFRIEVIDDDVFEEDECFYIRLFNPSEGVKLAVPMIATVMILDDDH 114
Score = 59.6 bits (145), Expect = 2e-11
Identities = 20/65 (30%), Positives = 28/65 (43%)
Query: 261 GSFGFLETSVTIAESVGMYELEVLRSCGARGTVEVGYKTYDDTAKAGTHYVQTEGALIFH 320
F T+ E+ G +E+ V+R V Y+T D TA AGT +V +G L F
Sbjct: 3 IRMYFEPGHYTVMENCGEFEVRVVRRGDISTYASVEYETQDGTASAGTDFVGRKGLLSFP 62
Query: 321 NEETS 325
Sbjct: 63 PGVDE 67
>3gin_A Sodium/calcium exchanger 1; CBD1, CBD2, NCX, calcium binding domain
1, antiport, calcium transport, calmodulin-binding, cell
membrane; 2.40A {Canis lupus familiaris} PDB: 2dpk_A*
2fws_A
Length = 160
Score = 132 bits (333), Expect = 4e-38
Identities = 63/135 (46%), Positives = 82/135 (60%), Gaps = 19/135 (14%)
Query: 94 RIFFKPQYYTVLENVGEFEVVVARE-GDVSGTVTVEYATEDGTAQAGSDYVGAAGKIVFQ 152
+IFF+ Y LEN G + + R GD++ TV V++ TEDGTA AGSDY G +VF+
Sbjct: 24 KIFFEQGTYQCLENCGTVALTIIRRGGDLTNTVFVDFRTEDGTANAGSDYEFTEGTVVFK 83
Query: 153 PGELEQRIRLQVIDDDVFEEDEYFFVHLTKVK------------------DAKLVAPSSA 194
PGE ++ IR+ +IDDD+FEED+ F VHL+ VK A L +PS+A
Sbjct: 84 PGETQKEIRVGIIDDDIFEEDKNFLVHLSNVKVSSEASEDGILEANHVSALACLGSPSTA 143
Query: 195 TVMILDDDHAGSFGF 209
TV I DDDHAG F F
Sbjct: 144 TVTIFDDDHAGIFTF 158
Score = 73.8 bits (181), Expect = 4e-16
Identities = 26/87 (29%), Positives = 38/87 (43%), Gaps = 3/87 (3%)
Query: 242 AKLVAPSSATVMILDDD--HAGSFGFLETSVTIAESVGMYELEVLRSCGA-RGTVEVGYK 298
A SA + +L F + + E+ G L ++R G TV V ++
Sbjct: 2 AHHHHHHSAALEVLFQGPGPVSKIFFEQGTYQCLENCGTVALTIIRRGGDLTNTVFVDFR 61
Query: 299 TYDDTAKAGTHYVQTEGALIFHNEETS 325
T D TA AG+ Y TEG ++F ET
Sbjct: 62 TEDGTANAGSDYEFTEGTVVFKPGETQ 88
>3fso_A Integrin beta-4, GP150; immunoglobulin fold, cell adhesion,
alternative splicing, disease mutation, epidermolysis
bullosa, glycoprotein, membrane; 1.41A {Homo sapiens}
PDB: 3fq4_A 3h6a_A
Length = 123
Score = 122 bits (309), Expect = 7e-35
Identities = 33/115 (28%), Positives = 56/115 (48%), Gaps = 7/115 (6%)
Query: 95 IFFKPQYYTVLENVGEFEVVVAREGDVSGTVTVEYATEDGTAQAGSDYVGAAGKIVFQPG 154
+ F+ ++V + V R G V Y T+DGTAQ DY+ G+++FQPG
Sbjct: 8 VSFEQPEFSVSRGDQVARIPVIRRVLDGGKSQVSYRTQDGTAQGNRDYIPVEGELLFQPG 67
Query: 155 ELEQRIRLQVIDDDVFE------EDEYFFVHLTKVKD-AKLVAPSSATVMILDDD 202
E + +++++++ + + F V L+ K A L P S T++I D D
Sbjct: 68 EAWKELQVKLLELQEVDSLLRGRQVRRFHVQLSNPKFGAHLGQPHSTTIIIRDPD 122
Score = 71.3 bits (175), Expect = 1e-15
Identities = 16/69 (23%), Positives = 28/69 (40%)
Query: 257 DDHAGSFGFLETSVTIAESVGMYELEVLRSCGARGTVEVGYKTYDDTAKAGTHYVQTEGA 316
F + +++ + + V+R G +V Y+T D TA+ Y+ EG
Sbjct: 2 SHMRDVVSFEQPEFSVSRGDQVARIPVIRRVLDGGKSQVSYRTQDGTAQGNRDYIPVEGE 61
Query: 317 LIFHNEETS 325
L+F E
Sbjct: 62 LLFQPGEAW 70
>2lt9_A Protein SLC8A3; NCX, NCX3, NACA exchanger, CBD, CBD2, calcium
binding domain binding protein; NMR {Mus musculus}
Length = 157
Score = 106 bits (266), Expect = 3e-28
Identities = 36/138 (26%), Positives = 64/138 (46%), Gaps = 11/138 (7%)
Query: 93 ARIFFKPQYYTVLENVGEFEVVVAREGDVSGTVTVEYATEDGTAQAGS-DYVGAAGKIVF 151
F+ V E++G EV V R GTV V + T +GTA+ G D+ A G++ F
Sbjct: 12 GIFTFECDTIHVSESIGVMEVKVLRTSGARGTVIVPFRTVEGTAKGGGEDFEDAYGELEF 71
Query: 152 QPGELEQRIRLQVIDDDVFEEDEYFFVHLTKVKDAKLV--APSSATVMILDDDHAG--SF 207
+ E + IR++++D++ +E E FF+ L + K + + + + +++
Sbjct: 72 KNDETVKTIRVKIVDEEEYERQENFFIALGEPKWMERGISEVTDRKLTVEEEEAKRIAEM 131
Query: 208 G------FLETSVTIAES 219
G + V I ES
Sbjct: 132 GKPVLGEHPKLEVIIEES 149
Score = 69.6 bits (170), Expect = 1e-14
Identities = 30/75 (40%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Query: 256 DDDHAGSFGFLETSVTIAESVGMYELEVLRSCGARGTVEVGYKTYDDTAKAGT-HYVQTE 314
HAG F F ++ ++ES+G+ E++VLR+ GARGTV V ++T + TAK G +
Sbjct: 7 HHHHAGIFTFECDTIHVSESIGVMEVKVLRTSGARGTVIVPFRTVEGTAKGGGEDFEDAY 66
Query: 315 GALIFHNEETSYFYN 329
G L F N+ET
Sbjct: 67 GELEFKNDETVKTIR 81
Score = 29.5 bits (66), Expect = 0.78
Identities = 8/24 (33%), Positives = 15/24 (62%)
Query: 200 DDDHAGSFGFLETSVTIAESVGIV 223
HAG F F ++ ++ES+G++
Sbjct: 7 HHHHAGIFTFECDTIHVSESIGVM 30
>2qvk_A CBD2, sodium/calcium exchanger 1; calcium binding domain, metal
binding protein; 1.45A {Canis lupus familiaris} PDB:
2qvm_A 2fwu_A 2kls_A
Length = 192
Score = 107 bits (267), Expect = 4e-28
Identities = 32/129 (24%), Positives = 57/129 (44%), Gaps = 1/129 (0%)
Query: 94 RIFFKPQYYTVLENVGEFEVVVAREGDVSGTVTVEYATEDGTAQAG-SDYVGAAGKIVFQ 152
F+ V E++G EV V R G V V Y T +GTA+ G D+ G++ FQ
Sbjct: 7 IFTFEEPVTHVSESIGIMEVKVLRTSGARGNVIVPYKTIEGTARGGGEDFEDTCGELEFQ 66
Query: 153 PGELEQRIRLQVIDDDVFEEDEYFFVHLTKVKDAKLVAPSSATVMILDDDHAGSFGFLET 212
E+ + I ++VIDD+ +E+++ FF+ + + + ++ + + L
Sbjct: 67 NDEIVKTISVKVIDDEEYEKNKTFFLEIGEPRLVEMSEKKALLLNELGGFTITGKYLYGQ 126
Query: 213 SVTIAESVG 221
V
Sbjct: 127 PVFRKVHAR 135
Score = 67.8 bits (165), Expect = 1e-13
Identities = 31/68 (45%), Positives = 42/68 (61%), Gaps = 1/68 (1%)
Query: 259 HAGSFGFLETSVTIAESVGMYELEVLRSCGARGTVEVGYKTYDDTAKAGT-HYVQTEGAL 317
HAG F F E ++ES+G+ E++VLR+ GARG V V YKT + TA+ G + T G L
Sbjct: 4 HAGIFTFEEPVTHVSESIGIMEVKVLRTSGARGNVIVPYKTIEGTARGGGEDFEDTCGEL 63
Query: 318 IFHNEETS 325
F N+E
Sbjct: 64 EFQNDEIV 71
Score = 27.4 bits (60), Expect = 4.9
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 203 HAGSFGFLETSVTIAESVGIV 223
HAG F F E ++ES+GI+
Sbjct: 4 HAGIFTFEEPVTHVSESIGIM 24
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 42.0 bits (98), Expect = 3e-04
Identities = 31/209 (14%), Positives = 63/209 (30%), Gaps = 56/209 (26%)
Query: 44 EIMKRVPKSRAFY-------RIQASRNIMGSFQSARKEKPQHRPTSPLPELGGLTGARIF 96
+I+ P + + RI+ + + M F++ K + E+ + + F
Sbjct: 1663 DIVINNPVNLTIHFGGEKGKRIRENYSAM-IFETIVDGKLKTEK--IFKEINEHSTSYTF 1719
Query: 97 FKPQ------YYT----VLENVGEFEVVVAREGDVSGTVTV------EY-ATEDGTAQAG 139
+ +T L FE + + +G + T EY A + A
Sbjct: 1720 RSEKGLLSATQFTQPALTLMEKAAFEDLKS-KGLIPADATFAGHSLGEYAAL---ASLAD 1775
Query: 140 SDYVGAAGKIVFQPGELEQRIRLQVIDDDVFEEDEYFFVHLTKVKDAKLVA--PSSATVM 197
+ + ++VF G Q DE + ++A P
Sbjct: 1776 VMSIESLVEVVFYRGMTMQ---------VAVPRDE------LGRSNYGMIAINPGRVAAS 1820
Query: 198 ILDDDHAGSFGFLETSV-TIAESVGIVKE 225
+ L+ V + + G + E
Sbjct: 1821 FSQEA-------LQYVVERVGKRTGWLVE 1842
Score = 39.3 bits (91), Expect = 0.002
Identities = 53/288 (18%), Positives = 84/288 (29%), Gaps = 116/288 (40%)
Query: 3 KDVEEEILEENETMNYATTLRELRQMHPNLKMEELEKMAENEIMKRV----PKS-----R 53
+ V++ + + N + L +Q+ +L N V P+S
Sbjct: 347 EQVQDYVNKTN------SHLPAGKQVEISLV---------NGAKNLVVSGPPQSLYGLNL 391
Query: 54 AFYRIQASRNIMGSFQ-----SARKEKPQHR--PT-----SPLPELGGLTGARIFFKPQY 101
+ +A G Q S RK K +R P S L L A
Sbjct: 392 TLRKAKAP---SGLDQSRIPFSERKLKFSNRFLPVASPFHSHL-----LVPAS------- 436
Query: 102 YTVLENVGEFEVVVAREGDVSGTVTVEYATEDGTAQAGSDYVGAAGKIVFQPGELEQRIR 161
+ +++ + V + D+ V Y T D GSD +G I
Sbjct: 437 DLINKDLVKNNVSFNAK-DIQIPV---YDTFD-----GSDLRVLSGSIS----------- 476
Query: 162 LQVIDDDVFEEDEYFFVHLTKVKDAKLVAPSSATVMILDDDHAGSFGFLETSVTIAESVG 221
+ I D + V AT ILD FG S
Sbjct: 477 -ERIVDCIIRLP----VKWET------TTQFKAT-HILD------FGPGGAS-------- 510
Query: 222 IVKELWSTRHGVVHLT-KVKD---AKLVAPSSATVMILDDDHAGSFGF 265
G+ LT + KD +++ + LD + +GF
Sbjct: 511 ----------GLGVLTHRNKDGTGVRVIVAGT-----LDINPDDDYGF 543
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.5 bits (70), Expect = 0.22
Identities = 8/31 (25%), Positives = 14/31 (45%), Gaps = 6/31 (19%)
Query: 171 EEDEYFFVHLTKVKDA-KLVAPSSATVMILD 200
E+ L K++ + KL A SA + +
Sbjct: 18 EKQA-----LKKLQASLKLYADDSAPALAIK 43
Score = 31.1 bits (69), Expect = 0.31
Identities = 7/22 (31%), Positives = 12/22 (54%), Gaps = 1/22 (4%)
Query: 236 LTKVKDA-KLVAPSSATVMILD 256
L K++ + KL A SA + +
Sbjct: 22 LKKLQASLKLYADDSAPALAIK 43
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 31.0 bits (69), Expect = 0.72
Identities = 13/63 (20%), Positives = 25/63 (39%), Gaps = 15/63 (23%)
Query: 156 LEQRIRLQVIDDDVF---EEDEYFFV----HLTKVKDAKLVAPSSATVMILDDDHAGSFG 208
++ + D D D+YF+ HL ++ + + + ++ LD F
Sbjct: 450 VDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERM--TLFRMVFLD------FR 501
Query: 209 FLE 211
FLE
Sbjct: 502 FLE 504
>2xzm_X RPS30E; ribosome, translation; 3.93A {Tetrahymena thermophila}
PDB: 2xzn_X 3j0o_X 3j0l_X 3j0p_X 3j0q_X
Length = 80
Score = 27.0 bits (59), Expect = 2.2
Identities = 8/41 (19%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Query: 39 KMAENEIMKRVPKSRAFYRIQASR---NIMGSFQSARKEKP 76
K+ + + ++ PK R++ RI +R + + +++ P
Sbjct: 20 KVEKKDKPRKTPKGRSYKRILYNRRYAPHILATDPKKRKSP 60
>3u5c_E RP5, S7, YS6, 40S ribosomal protein S4-A; translation, ribosome,
ribosomal, ribosomal R ribosomal protein, eukaryotic
ribosome, RNA-protein C; 3.00A {Saccharomyces
cerevisiae} PDB: 3izb_D 3u5g_E
Length = 261
Score = 26.5 bits (58), Expect = 2.4
Identities = 4/59 (6%), Positives = 13/59 (22%), Gaps = 9/59 (15%)
Query: 24 ELRQMHPNLKMEELEKMAENEIMKRVPKSRAFYRIQASRNIMGSFQSARKEKPQHRPTS 82
+ S ++++ S ++ ++ K R
Sbjct: 13 AAPHHWL--LDKLSGC-------YAPRPSAGPHKLRESLPLIVFLRNRLKYALNGREVK 62
>3qk9_A Mitochondrial import inner membrane translocase S TIM44;
mitochondrion, protein transport; 3.10A {Saccharomyces
cerevisiae} PDB: 2fxt_A
Length = 222
Score = 27.7 bits (61), Expect = 4.9
Identities = 6/46 (13%), Positives = 14/46 (30%), Gaps = 3/46 (6%)
Query: 4 DVEEEILEENETMNYATTLRELRQMHPNLKMEELEKMAENEIMKRV 49
+ E E+ + + + M P E + I+ +
Sbjct: 50 NKVGGFFAETES---SRVYSQFKLMDPTFSNESFTRHLREYIVPEI 92
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 27.0 bits (59), Expect = 7.1
Identities = 10/79 (12%), Positives = 27/79 (34%), Gaps = 21/79 (26%)
Query: 6 EEEILEENETM-----NYATTLRELRQMHPNLKMEELEKMAENEIMKRVPKSRAFYRIQA 60
+ + +E E++ L+E + +E + A+ ++ + + Q+
Sbjct: 77 ADRLTQEPESIRKWREEQRKRLQE-LDAASKVMEQEWREKAKKDL-------EEWNQRQS 128
Query: 61 SRNIMGSFQSARKEKPQHR 79
+ K K +R
Sbjct: 129 --------EQVEKNKINNR 139
>2wry_A IL-1 beta, interleukin-1BETA; immune system, pyrogen, mitogen,
inflammatory response; 1.58A {Gallus gallus} PDB: 3nj5_A
Length = 162
Score = 26.9 bits (59), Expect = 7.4
Identities = 12/44 (27%), Positives = 19/44 (43%), Gaps = 2/44 (4%)
Query: 29 HPNLKMEELEKMAENEIMKRVPKSRAFYRIQASRNIMGSFQSAR 72
P L++EE + M +I FYR+ + F+SA
Sbjct: 86 EPTLQLEEADVM--RDIDSVELTRFIFYRLDSPTEGTTRFESAA 127
>3frm_A Uncharacterized conserved protein; APC61048, staphylococcus
epidermidis ATCC structural genomics, PSI-2, protein
structure initiative; HET: MES; 2.32A {Staphylococcus
epidermidis}
Length = 254
Score = 26.9 bits (59), Expect = 9.8
Identities = 5/30 (16%), Positives = 8/30 (26%)
Query: 299 TYDDTAKAGTHYVQTEGALIFHNEETSYFY 328
T+ D G + I+ Y
Sbjct: 8 TFKDIYIDGNKITEDSRKAIYLLPPQPLKY 37
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.315 0.132 0.367
Gapped
Lambda K H
0.267 0.0550 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,199,671
Number of extensions: 329857
Number of successful extensions: 903
Number of sequences better than 10.0: 1
Number of HSP's gapped: 882
Number of HSP's successfully gapped: 53
Length of query: 334
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 240
Effective length of database: 4,077,219
Effective search space: 978532560
Effective search space used: 978532560
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (26.1 bits)