RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy11985
         (334 letters)



>d2dpka1 b.1.27.1 (A:370-502) Sodium/calcium exchanger 1 {Dog (Canis
           familiaris) [TaxId: 9615]}
          Length = 133

 Score =  103 bits (258), Expect = 5e-28
 Identities = 61/131 (46%), Positives = 80/131 (61%), Gaps = 19/131 (14%)

Query: 93  ARIFFKPQYYTVLENVGEFEVVVARE-GDVSGTVTVEYATEDGTAQAGSDYVGAAGKIVF 151
           ++IFF+   Y  LEN G   + + R  GD++ TV V++ TEDGTA AGSDY    G +VF
Sbjct: 3   SKIFFEQGTYQCLENCGTVALTIIRRGGDLTNTVFVDFRTEDGTANAGSDYEFTEGTVVF 62

Query: 152 QPGELEQRIRLQVIDDDVFEEDEYFFVHLTKVK------------------DAKLVAPSS 193
           +PGE ++ IR+ +IDDD+FEEDE F VHL+ VK                   A L +PS+
Sbjct: 63  KPGETQKEIRVGIIDDDIFEEDENFLVHLSNVKVSSEASEDGILEANHVSALACLGSPST 122

Query: 194 ATVMILDDDHA 204
           ATV I DDDHA
Sbjct: 123 ATVTIFDDDHA 133



 Score = 42.2 bits (98), Expect = 1e-05
 Identities = 22/66 (33%), Positives = 32/66 (48%), Gaps = 1/66 (1%)

Query: 261 GSFGFLETSVTIAESVGMYELEVLRSCG-ARGTVEVGYKTYDDTAKAGTHYVQTEGALIF 319
               F + +    E+ G   L ++R  G    TV V ++T D TA AG+ Y  TEG ++F
Sbjct: 3   SKIFFEQGTYQCLENCGTVALTIIRRGGDLTNTVFVDFRTEDGTANAGSDYEFTEGTVVF 62

Query: 320 HNEETS 325
              ET 
Sbjct: 63  KPGETQ 68


>d2fwua1 b.1.27.1 (A:501-657) Sodium/calcium exchanger 1 {Dog (Canis
           familiaris) [TaxId: 9615]}
          Length = 157

 Score = 87.5 bits (216), Expect = 1e-21
 Identities = 32/117 (27%), Positives = 57/117 (48%), Gaps = 1/117 (0%)

Query: 97  FKPQYYTVLENVGEFEVVVAREGDVSGTVTVEYATEDGTAQA-GSDYVGAAGKIVFQPGE 155
           F+     V E++G  EV V R     G V V Y T +GTA+  G D+    G++ FQ  E
Sbjct: 7   FEEPVTHVSESIGIMEVKVLRTSGARGNVIVPYKTIEGTARGGGEDFEDTCGELEFQNDE 66

Query: 156 LEQRIRLQVIDDDVFEEDEYFFVHLTKVKDAKLVAPSSATVMILDDDHAGSFGFLET 212
           + + I ++VIDD+ +E+++ FF+ + + +  ++        +  + D        E 
Sbjct: 67  IVKTISVKVIDDEEYEKNKTFFLEIGEPRLVEMSEKKGGFTITEEYDDKQPLTSKEE 123



 Score = 57.1 bits (137), Expect = 1e-10
 Identities = 32/77 (41%), Positives = 46/77 (59%), Gaps = 1/77 (1%)

Query: 259 HAGSFGFLETSVTIAESVGMYELEVLRSCGARGTVEVGYKTYDDTAKA-GTHYVQTEGAL 317
           HAG F F E    ++ES+G+ E++VLR+ GARG V V YKT + TA+  G  +  T G L
Sbjct: 1   HAGIFTFEEPVTHVSESIGIMEVKVLRTSGARGNVIVPYKTIEGTARGGGEDFEDTCGEL 60

Query: 318 IFHNEETSYFYNRRSVD 334
            F N+E     + + +D
Sbjct: 61  EFQNDEIVKTISVKVID 77



 Score = 29.3 bits (65), Expect = 0.36
 Identities = 10/21 (47%), Positives = 14/21 (66%)

Query: 203 HAGSFGFLETSVTIAESVGIV 223
           HAG F F E    ++ES+GI+
Sbjct: 1   HAGIFTFEEPVTHVSESIGIM 21


>d2fxta1 d.17.4.13 (A:234-425) Translocase of inner mitochondrial
          membrane TIMM44 (TIM44), C-terminal domain {Baker's
          yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 192

 Score = 29.9 bits (67), Expect = 0.29
 Identities = 6/46 (13%), Positives = 14/46 (30%), Gaps = 3/46 (6%)

Query: 4  DVEEEILEENETMNYATTLRELRQMHPNLKMEELEKMAENEIMKRV 49
          +       E E+   +    + + M P    E   +     I+  +
Sbjct: 26 NKVGGFFAETES---SRVYSQFKLMDPTFSNESFTRHLREYIVPEI 68


>d1p5ja_ c.79.1.1 (A:) L-serine dehydratase {Human (Homo sapiens)
          [TaxId: 9606]}
          Length = 319

 Score = 27.1 bits (58), Expect = 3.2
 Identities = 7/27 (25%), Positives = 12/27 (44%), Gaps = 4/27 (14%)

Query: 75 KPQHRPTSPL---PELGGLTGARIFFK 98
          +P H  T P+     L  + G  ++ K
Sbjct: 2  EPLHVKT-PIRDSMALSKMAGTSVYLK 27


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.315    0.132    0.367 

Gapped
Lambda     K      H
   0.267   0.0590    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,228,466
Number of extensions: 58616
Number of successful extensions: 196
Number of sequences better than 10.0: 1
Number of HSP's gapped: 193
Number of HSP's successfully gapped: 10
Length of query: 334
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 248
Effective length of database: 1,226,816
Effective search space: 304250368
Effective search space used: 304250368
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (24.5 bits)