Query psy11988
Match_columns 156
No_of_seqs 119 out of 870
Neff 6.3
Searched_HMMs 29240
Date Fri Aug 16 15:44:16 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11988.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/11988hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1u5m_A Cartilage, alpha 1 type 99.5 7.5E-14 2.6E-18 94.0 6.7 57 35-94 9-67 (73)
2 3bk3_C Crossveinless 2, bone m 99.1 1.1E-10 3.9E-15 77.3 4.3 55 35-93 9-66 (67)
3 3bk3_C Crossveinless 2, bone m 97.8 8.7E-06 3E-10 53.6 2.9 33 1-35 34-67 (67)
4 1u5m_A Cartilage, alpha 1 type 97.8 1.7E-05 5.7E-10 52.8 3.7 33 1-35 35-67 (73)
5 3ejh_A Fibronectin; fibronecti 93.7 0.087 3E-06 36.5 4.4 69 35-122 2-75 (93)
6 1o9a_A Fibronectin; cell adhes 92.4 0.061 2.1E-06 37.3 2.1 68 35-119 4-76 (93)
7 2xtt_A Protease inhibitor SGPI 92.1 0.15 5.2E-06 29.3 3.2 28 44-74 5-33 (36)
8 1xhh_A Beta-microseminoprotein 91.4 0.21 7.1E-06 34.5 3.9 34 35-70 14-48 (91)
9 3ix0_A Beta-microseminoprotein 90.7 0.27 9.1E-06 34.0 3.9 35 34-70 16-51 (94)
10 1wo9_A HI-1, trypsin inhibitor 83.3 0.84 2.9E-05 25.8 2.4 28 44-74 5-33 (35)
11 2cg7_A Fibronectin; signaling 83.3 0.93 3.2E-05 31.1 3.1 53 38-111 9-65 (90)
12 1gl0_I Protease inhibitor LCMI 82.0 1.8 6E-05 24.6 3.4 28 44-74 5-33 (35)
13 3tvj_I Protease inhibitor SGPI 80.2 1.7 5.7E-05 25.2 3.0 28 44-74 8-37 (38)
14 2rl0_A Fibronectin; 4F15F1, be 79.8 1.5 5E-05 30.0 3.1 63 38-121 7-77 (89)
15 2cg7_A Fibronectin; signaling 78.6 2.2 7.4E-05 29.2 3.6 37 35-71 48-90 (90)
16 2ec3_A Fibronectin; complement 76.7 2 6.9E-05 27.9 2.9 38 34-71 18-60 (68)
17 3m7p_A FN1 protein; fibronecti 54.4 3.1 0.00011 34.4 0.5 67 35-120 221-292 (308)
18 2rl0_A Fibronectin; 4F15F1, be 40.9 26 0.00087 23.8 3.3 36 34-69 46-88 (89)
19 4b2u_A S67; toxin, ICK; NMR {S 40.6 13 0.00044 20.5 1.4 27 11-43 4-31 (36)
20 2j5h_A Teratocarcinoma-derived 29.8 9.2 0.00031 22.3 -0.4 24 48-73 12-35 (41)
21 1bx7_A Hirustasin; anti-coagul 26.0 83 0.0028 19.3 3.5 31 60-91 16-46 (55)
22 1dml_A DNA polymerase processi 21.1 15 0.00051 30.5 -0.8 23 134-156 65-89 (319)
No 1
>1u5m_A Cartilage, alpha 1 type II collagen isoform 1; disulfide bonds, two SUB-domain architecture, beta-sheet, structural protein; NMR {Homo sapiens} SCOP: g.27.1.2
Probab=99.47 E-value=7.5e-14 Score=93.97 Aligned_cols=57 Identities=35% Similarity=0.899 Sum_probs=53.7
Q ss_pred ccccCCEEecCCCeEeCCCCCceEEEecCCceEEEeeecC-C-CCCCCCCCCCCCCCCCCCC
Q psy11988 35 GCVHHGVFRESGSEWTDPDNPCRIFTCKAGVVTETEMQCY-A-PCKHPTPPGPGQCCPTCPG 94 (156)
Q Consensus 35 ~C~~~g~~y~~Ge~w~~~~d~C~~C~C~~G~v~C~~~~Cp-~-~C~~~~~~~pG~CCp~C~~ 94 (156)
+|.++|++|.+|++|++ ++|++|+|.+|.+.|.++.|| + +|+++. ..+|+|||+|+.
T Consensus 9 ~C~~~G~~y~~ge~W~~--d~C~~C~C~~G~v~C~~~~Cp~~~~C~~p~-~~~GeCCPvC~~ 67 (73)
T 1u5m_A 9 SCVQDGQRYNDKDVWKP--EPCRICVCDTGTVLCDDIICEDVKDCLSPE-IPFGECCPICPA 67 (73)
T ss_dssp CEESSSCEECSSCEECS--CSSEEEEEETTEEEEEECCCSCCSSCSCCC-CCSSCSCCSCCS
T ss_pred CeeECCEEEcCCCEECC--cCcCceECCCCcEEeccccCCCccCCCCCc-ccCCCcCCCCCC
Confidence 69999999999999998 789999999999999999999 6 999988 889999999973
No 2
>3bk3_C Crossveinless 2, bone morphogenetic protein 2; TGF-beta superfamily, BMP modulator proteins, chordin, BMP inhibitor, chondrogenesis; 2.70A {Danio rerio}
Probab=99.06 E-value=1.1e-10 Score=77.34 Aligned_cols=55 Identities=25% Similarity=0.572 Sum_probs=48.5
Q ss_pred ccccCCEEecCCCeEeCCCCCceEEEecCCceEEEeeecC-CC--CCCCCCCCCCCCCCCCC
Q psy11988 35 GCVHHGVFRESGSEWTDPDNPCRIFTCKAGVVTETEMQCY-AP--CKHPTPPGPGQCCPTCP 93 (156)
Q Consensus 35 ~C~~~g~~y~~Ge~w~~~~d~C~~C~C~~G~v~C~~~~Cp-~~--C~~~~~~~pG~CCp~C~ 93 (156)
.|.++|++|.++. |.. ++|++|+|++|.+.|.++.|| ++ |+.+. ..+|+|||+|.
T Consensus 9 ~C~~eGe~~~~~~-~~~--~~C~~C~C~~G~v~C~~~~CP~l~~~C~~~~-~~~g~CCp~C~ 66 (67)
T 3bk3_C 9 SCENEGEVLHIPN-ITD--NPCISCVCLNQKAECKQEKCAPLAEDCALVV-KQTGACCEKCK 66 (67)
T ss_dssp BCSSTTCEECCTT-TTT--STTEEEEECSSBEEEEECCCCCCCTTCCCEE-CCTTCSSCEEC
T ss_pred ceEECCEEEeCCC-ccC--CCcceeEecCCceEEccccCCCCccccCCcc-cCCCCcCcCcC
Confidence 5899999998764 665 789999999999999999999 67 98876 78999999985
No 3
>3bk3_C Crossveinless 2, bone morphogenetic protein 2; TGF-beta superfamily, BMP modulator proteins, chordin, BMP inhibitor, chondrogenesis; 2.70A {Danio rerio}
Probab=97.84 E-value=8.7e-06 Score=53.65 Aligned_cols=33 Identities=33% Similarity=0.926 Sum_probs=28.7
Q ss_pred CCeEEeeccCCCCCC-CCCcccccccCCCcCCCCCc
Q psy11988 1 NGFVECNRKSCPNQE-GCHKLLEAKEKDGCCRKCQG 35 (156)
Q Consensus 1 ~G~v~C~~~~Cp~~~-~C~~~v~~~~~g~CCP~C~~ 35 (156)
+|.|.|.++.||+++ .|++++ +.+|+|||+|.+
T Consensus 34 ~G~v~C~~~~CP~l~~~C~~~~--~~~g~CCp~C~~ 67 (67)
T 3bk3_C 34 NQKAECKQEKCAPLAEDCALVV--KQTGACCEKCKG 67 (67)
T ss_dssp SSBEEEEECCCCCCCTTCCCEE--CCTTCSSCEECC
T ss_pred CCceEEccccCCCCccccCCcc--cCCCCcCcCcCc
Confidence 699999999999984 299888 889999999863
No 4
>1u5m_A Cartilage, alpha 1 type II collagen isoform 1; disulfide bonds, two SUB-domain architecture, beta-sheet, structural protein; NMR {Homo sapiens} SCOP: g.27.1.2
Probab=97.80 E-value=1.7e-05 Score=52.79 Aligned_cols=33 Identities=24% Similarity=0.584 Sum_probs=29.1
Q ss_pred CCeEEeeccCCCCCCCCCcccccccCCCcCCCCCc
Q psy11988 1 NGFVECNRKSCPNQEGCHKLLEAKEKDGCCRKCQG 35 (156)
Q Consensus 1 ~G~v~C~~~~Cp~~~~C~~~v~~~~~g~CCP~C~~ 35 (156)
+|.|.|.++.||.+.+|++++ +.+|+|||+|+.
T Consensus 35 ~G~v~C~~~~Cp~~~~C~~p~--~~~GeCCPvC~~ 67 (73)
T 1u5m_A 35 TGTVLCDDIICEDVKDCLSPE--IPFGECCPICPA 67 (73)
T ss_dssp TTEEEEEECCCSCCSSCSCCC--CCSSCSCCSCCS
T ss_pred CCcEEeccccCCCccCCCCCc--ccCCCcCCCCCC
Confidence 699999999999982399998 899999999963
No 5
>3ejh_A Fibronectin; fibronectin, protein complex, collagenase site, AC phase, cell adhesion, disease mutation; HET: NAG; 2.10A {Homo sapiens} PDB: 3gxe_B*
Probab=93.73 E-value=0.087 Score=36.48 Aligned_cols=69 Identities=10% Similarity=0.110 Sum_probs=48.0
Q ss_pred ccccCCEEecCCCeEeCCCC--CceEEEec---CCceEEEeeecCCCCCCCCCCCCCCCCCCCCCCCCCCEEecCCceec
Q psy11988 35 GCVHHGVFRESGSEWTDPDN--PCRIFTCK---AGVVTETEMQCYAPCKHPTPPGPGQCCPTCPGKRPYGLLYVAFGLLN 109 (156)
Q Consensus 35 ~C~~~g~~y~~Ge~w~~~~d--~C~~C~C~---~G~v~C~~~~Cp~~C~~~~~~~pG~CCp~C~~C~~~g~~y~~G~~~~ 109 (156)
.|..+|..|..|++|....+ .=..|+|. +|...|.... .|.++ ..+..|+-|++|.
T Consensus 2 ~C~~~g~~Y~VG~~w~k~~e~G~mm~CTC~G~GrG~wkC~~~d---~C~D~----------------~~g~~Y~IGetW~ 62 (93)
T 3ejh_A 2 QCIVDDITYNVQDTFHKKHEEGHMLNCTCFGQGRGRWKCDPVD---QCQDS----------------ETGTFYQIGDSWE 62 (93)
T ss_dssp EEEETTEEEETTEEEEEECTTSCEEEEEEEETTTTEEEEEECS---EEECT----------------TTCCEEETTCEEE
T ss_pred ccEECCcEEecCCEEEecccCCCEEEeEEcCCCcccEEecCCc---cCCcc----------------CCCcEeecCCeEe
Confidence 48899999999999965432 34589998 3678888541 22221 3588999999998
Q ss_pred CCCCCCceeecCc
Q psy11988 110 ATFGPPHVASGLL 122 (156)
Q Consensus 110 ~~~~c~~~~c~~~ 122 (156)
...+=..++|-.+
T Consensus 63 k~~~G~~~~CtC~ 75 (93)
T 3ejh_A 63 KYVHGVRYQCYCY 75 (93)
T ss_dssp ECCTTCCEEEEEE
T ss_pred eccCCeEEEeEEE
Confidence 8655555555443
No 6
>1o9a_A Fibronectin; cell adhesion/complex, HOST-pathogen protein complex, cell adhesion; NMR {Homo sapiens} SCOP: g.27.1.1 g.27.1.1 PDB: 1qgb_A
Probab=92.39 E-value=0.061 Score=37.27 Aligned_cols=68 Identities=15% Similarity=0.177 Sum_probs=43.8
Q ss_pred ccccCCEEecCCCeEeCCC-CCceEEEecCCc--eEEEeeecCCCCCCCCCCCCCCCCCCCCCCC--CCCEEecCCceec
Q psy11988 35 GCVHHGVFRESGSEWTDPD-NPCRIFTCKAGV--VTETEMQCYAPCKHPTPPGPGQCCPTCPGKR--PYGLLYVAFGLLN 109 (156)
Q Consensus 35 ~C~~~g~~y~~Ge~w~~~~-d~C~~C~C~~G~--v~C~~~~Cp~~C~~~~~~~pG~CCp~C~~C~--~~g~~y~~G~~~~ 109 (156)
.|..+|+.|..|++|.... ..=..|+|..+. ..|..+ |. .. +.|. +.|+.|.-|++|.
T Consensus 4 ~C~d~G~~Y~iGeqWer~~~G~~l~CTC~G~g~G~~C~sk--------P~---ae------e~C~Dk~~G~~Y~VGetwe 66 (93)
T 1o9a_A 4 GCYDNGKHYQINQQWERTYLGNALVCTCYGGSRGFNCESK--------PE---AE------ETCFDKYTGNTYRVGDTYE 66 (93)
T ss_dssp SCBCSSCBCCTTCEEEEEETTEEEEEEECSSTTCEEEEEC--------CC---SS------CEEEETTTTEEEETTCBCC
T ss_pred eEEcCCeEeecCCEEeeccCCCEEEEEEcCCCcceEecCC--------CC---cc------cccccCCCccEeecCCeEE
Confidence 5889999999999996532 334589997422 777641 11 01 1244 3689999999998
Q ss_pred CCCCCCceee
Q psy11988 110 ATFGPPHVAS 119 (156)
Q Consensus 110 ~~~~c~~~~c 119 (156)
.+..=..++|
T Consensus 67 r~~~g~~~~C 76 (93)
T 1o9a_A 67 RPKDSMIWDC 76 (93)
T ss_dssp EEETTEEECC
T ss_pred eccCCeEEEE
Confidence 6533233333
No 7
>2xtt_A Protease inhibitor SGPI-1; hydrolase, catalytic mechanism, inhibition, in vitro evoluti; 0.93A {Schistocerca gregaria} PDB: 1kj0_A 2f91_B 2vu8_I 1kio_A
Probab=92.09 E-value=0.15 Score=29.26 Aligned_cols=28 Identities=32% Similarity=0.565 Sum_probs=24.1
Q ss_pred cCCCeEeCCCCCceEEEec-CCceEEEeeecC
Q psy11988 44 ESGSEWTDPDNPCRIFTCK-AGVVTETEMQCY 74 (156)
Q Consensus 44 ~~Ge~w~~~~d~C~~C~C~-~G~v~C~~~~Cp 74 (156)
..|++|.. .|.+|+|. +|.-.|.++.||
T Consensus 5 ~pG~~~~~---dCNtC~C~~~G~W~CT~~~Cp 33 (36)
T 2xtt_A 5 EPGQTKKQ---DCNTCRCGSDGVWACTRMGCP 33 (36)
T ss_dssp CTTCEEEE---TTEEEEECTTSCEEEECCCCC
T ss_pred CCCCEEEC---CCCccCCCCCCEEeeeCCcCC
Confidence 46778775 49999999 999999999998
No 8
>1xhh_A Beta-microseminoprotein; beta srands, novel fold, prostatic secretory protein, solution structure, Na+, K+ ATPase inhibitor, unknown function; NMR {Sus scrofa} PDB: 2iz4_A
Probab=91.41 E-value=0.21 Score=34.48 Aligned_cols=34 Identities=24% Similarity=0.506 Sum_probs=30.2
Q ss_pred ccc-cCCEEecCCCeEeCCCCCceEEEecCCceEEEe
Q psy11988 35 GCV-HHGVFRESGSEWTDPDNPCRIFTCKAGVVTETE 70 (156)
Q Consensus 35 ~C~-~~g~~y~~Ge~w~~~~d~C~~C~C~~G~v~C~~ 70 (156)
+|. ++|+.+.-|++|.. +.|..|+|.+..+.|-.
T Consensus 14 ~C~D~~G~kh~l~s~W~T--~dC~~C~C~~~Gi~CC~ 48 (91)
T 1xhh_A 14 ECQDLKGVSHPLNSVWKT--KDCEECTCGQDAISCCN 48 (91)
T ss_dssp EEEETTTEEEECCCCEEC--SSSEEEEECSSEEEEEE
T ss_pred CCCcCCCcEEeCCCeECC--CCceEeEecCCCcEeec
Confidence 477 99999999999998 77999999988887764
No 9
>3ix0_A Beta-microseminoprotein; beta sheet, greek KEY motif, alternative splicing, disulfide bond, polymorphism, secreted, protein binding; 2.30A {Homo sapiens} PDB: 2iz3_A
Probab=90.75 E-value=0.27 Score=34.05 Aligned_cols=35 Identities=23% Similarity=0.512 Sum_probs=29.4
Q ss_pred Cccc-cCCEEecCCCeEeCCCCCceEEEecCCceEEEe
Q psy11988 34 QGCV-HHGVFRESGSEWTDPDNPCRIFTCKAGVVTETE 70 (156)
Q Consensus 34 ~~C~-~~g~~y~~Ge~w~~~~d~C~~C~C~~G~v~C~~ 70 (156)
.+|. .+|+.|.-|++|.. +.|..|+|....+.|-.
T Consensus 16 ~~C~D~dG~~h~l~S~W~T--~~C~~C~C~~~Gi~CC~ 51 (94)
T 3ix0_A 16 RKCMDLKGNKHPINSEWQT--DNCETCTCYETEISCCT 51 (94)
T ss_dssp -CEECTTSCEECTTCEEEC--TTSEEEEECSSEEEEEE
T ss_pred CcCCCCCCCEEeCCCEECC--CCCcEeEecCCCceecc
Confidence 4687 79999999999998 67999999877777664
No 10
>1wo9_A HI-1, trypsin inhibitor; hydrolase inhibitor; NMR {Synthetic} SCOP: g.4.1.1
Probab=83.27 E-value=0.84 Score=25.84 Aligned_cols=28 Identities=25% Similarity=0.512 Sum_probs=23.1
Q ss_pred cCCCeEeCCCCCceEEEec-CCceEEEeeecC
Q psy11988 44 ESGSEWTDPDNPCRIFTCK-AGVVTETEMQCY 74 (156)
Q Consensus 44 ~~Ge~w~~~~d~C~~C~C~-~G~v~C~~~~Cp 74 (156)
.+|++++. .|.+|+|. +|.-.|....|+
T Consensus 5 ~pG~ti~~---dCNtCtC~~~g~W~CT~~~C~ 33 (35)
T 1wo9_A 5 TPGQTKKQ---DCNTCTCTPTGIWGCTRKACR 33 (35)
T ss_dssp CTTCEEEE---TTEEEEECTTSCEECCCSSSS
T ss_pred CCCCEEEC---CCCceECCCCCEEcCCCCCCC
Confidence 46778775 49999999 999999888776
No 11
>2cg7_A Fibronectin; signaling protein, 2F13F1, acute phase, alternative splicing, cell adhesion, glycoprotein, heparin-binding, phosphorylation; 1.2A {Homo sapiens} SCOP: g.27.1.1 g.27.1.1 PDB: 2cg6_A 2cku_A 2rkz_A 3cal_A 3zrz_A
Probab=83.26 E-value=0.93 Score=31.10 Aligned_cols=53 Identities=17% Similarity=0.145 Sum_probs=39.3
Q ss_pred cCCEEecCCCeEeCCCCC-ceEEEecC---CceEEEeeecCCCCCCCCCCCCCCCCCCCCCCCCCCEEecCCceecCC
Q psy11988 38 HHGVFRESGSEWTDPDNP-CRIFTCKA---GVVTETEMQCYAPCKHPTPPGPGQCCPTCPGKRPYGLLYVAFGLLNAT 111 (156)
Q Consensus 38 ~~g~~y~~Ge~w~~~~d~-C~~C~C~~---G~v~C~~~~Cp~~C~~~~~~~pG~CCp~C~~C~~~g~~y~~G~~~~~~ 111 (156)
++|+.|..||+|....+. =..|+|.. |.+.|... . .|..+++.|+-|++|...
T Consensus 9 ~tg~sY~VGe~Wer~~~~~~~~CtC~G~G~G~~~C~s~---------~------------~C~~~g~~Y~IGetW~k~ 65 (90)
T 2cg7_A 9 YTGNTYRVGDTYERPKDSMIWDCTCIGAGRGRISCTIA---------N------------RCHEGGQSYKIGDTWRRP 65 (90)
T ss_dssp TTCCEEETTCEEEEEETTEEEEEEEEETTTTEEEEECT---------T------------EEEETTEEEETTCEEEEE
T ss_pred CCCeEeecCCeeeEccCCcEEEEEEecCCCceEEECCc---------c------------eeeeCCcEEecCceEeec
Confidence 478999999999764433 33599983 78888821 1 356679999999999875
No 12
>1gl0_I Protease inhibitor LCMI I; hydrolase/inhibitor, complex (protease/inhibitor), hydrolase, serine protease, serine protease inhibitor; 3.0A {Locusta migratoria} SCOP: g.4.1.1
Probab=82.01 E-value=1.8 Score=24.63 Aligned_cols=28 Identities=32% Similarity=0.510 Sum_probs=23.2
Q ss_pred cCCCeEeCCCCCceEEEecC-CceEEEeeecC
Q psy11988 44 ESGSEWTDPDNPCRIFTCKA-GVVTETEMQCY 74 (156)
Q Consensus 44 ~~Ge~w~~~~d~C~~C~C~~-G~v~C~~~~Cp 74 (156)
..|++|.. .|..|+|.+ |.-.|.++.|.
T Consensus 5 ~PG~~~k~---~CN~C~C~~~G~~~CTlk~C~ 33 (35)
T 1gl0_I 5 TPGQVKQQ---DCNTCTCTPTGVWGCTLMGCQ 33 (35)
T ss_dssp CTTCEEEC---SSCEEEECTTSCEEEECCCCC
T ss_pred CCCccccc---CCCccCCCCCCeEEEEeeccc
Confidence 36888885 499999996 88999988885
No 13
>3tvj_I Protease inhibitor SGPI-2; in vitro evolution, specific inhibitor, allostery, hydrolase; 1.28A {Schistocerca gregaria} PDB: 4djz_H 1kgm_A 1gl1_I 1pmc_A
Probab=80.23 E-value=1.7 Score=25.17 Aligned_cols=28 Identities=29% Similarity=0.684 Sum_probs=22.0
Q ss_pred cCCCeEeCCCCCceEEEecC-Cc-eEEEeeecC
Q psy11988 44 ESGSEWTDPDNPCRIFTCKA-GV-VTETEMQCY 74 (156)
Q Consensus 44 ~~Ge~w~~~~d~C~~C~C~~-G~-v~C~~~~Cp 74 (156)
..|++|.. .|.+|+|.. |. ..|..+.||
T Consensus 8 ~Pg~tFk~---~CNtC~C~~dG~~a~CT~k~Cp 37 (38)
T 3tvj_I 8 EPGTTFKD---KCNTCRCGSDGKSAVCTKLWCN 37 (38)
T ss_dssp CTTCEEEE---TTEEEEECTTSSCEEEECCEEC
T ss_pred CCCCeeec---cCceeECCCCCceeEeecccCC
Confidence 45778885 599999984 55 589999887
No 14
>2rl0_A Fibronectin; 4F15F1, beta zipper, staphylococcus aureus, acute phase, alternative splicing, cell adhesion, extracellular matrix; 2.00A {Homo sapiens} SCOP: g.27.1.1 g.27.1.1 PDB: 1fbr_A 2rky_A
Probab=79.81 E-value=1.5 Score=30.04 Aligned_cols=63 Identities=16% Similarity=0.067 Sum_probs=41.4
Q ss_pred cCCEEecCCCeEeCCCCC-c-eEEEec---CCceEEEeeecCCCCCCCCCCCCCCCCCCCCCCCC--CCEEecCCceecC
Q psy11988 38 HHGVFRESGSEWTDPDNP-C-RIFTCK---AGVVTETEMQCYAPCKHPTPPGPGQCCPTCPGKRP--YGLLYVAFGLLNA 110 (156)
Q Consensus 38 ~~g~~y~~Ge~w~~~~d~-C-~~C~C~---~G~v~C~~~~Cp~~C~~~~~~~pG~CCp~C~~C~~--~g~~y~~G~~~~~ 110 (156)
++|+.|..||+|....+. - ..|+|. +|.+.|.... .|.. .|+.|+-|++|..
T Consensus 7 ~~g~~Y~VGe~wer~~~~g~~~~CTC~G~G~G~~~C~s~~---------------------~C~D~~tG~~Y~iGetW~k 65 (89)
T 2rl0_A 7 AAGTSYVVGETWEKPYQGWMMVDCTCLGEGSGRITCTSRN---------------------RCNDQDTRTSYRIGDTWSK 65 (89)
T ss_dssp TTTEEEETTCEEEEEETTTEEEEEEEEETTTTEEEEECTT---------------------EEEETTTTEEEETTCEEEE
T ss_pred CCCcEEecCceeeEccCCCeEEEeEEcCCCcceEEeCCCC---------------------cccccCCceEEEcCceeec
Confidence 348999999999765333 3 469998 3667777321 2332 3899999999985
Q ss_pred C-CCCCceeecC
Q psy11988 111 T-FGPPHVASGL 121 (156)
Q Consensus 111 ~-~~c~~~~c~~ 121 (156)
. ..=..++|..
T Consensus 66 ~~~~G~~~~C~C 77 (89)
T 2rl0_A 66 KDNRGNLLQCIC 77 (89)
T ss_dssp ECSSSCEEEEEE
T ss_pred CccCCcEEEEEE
Confidence 4 3334455543
No 15
>2cg7_A Fibronectin; signaling protein, 2F13F1, acute phase, alternative splicing, cell adhesion, glycoprotein, heparin-binding, phosphorylation; 1.2A {Homo sapiens} SCOP: g.27.1.1 g.27.1.1 PDB: 2cg6_A 2cku_A 2rkz_A 3cal_A 3zrz_A
Probab=78.61 E-value=2.2 Score=29.23 Aligned_cols=37 Identities=22% Similarity=0.362 Sum_probs=28.5
Q ss_pred ccccCCEEecCCCeEeCCCC---CceEEEec---CCceEEEee
Q psy11988 35 GCVHHGVFRESGSEWTDPDN---PCRIFTCK---AGVVTETEM 71 (156)
Q Consensus 35 ~C~~~g~~y~~Ge~w~~~~d---~C~~C~C~---~G~v~C~~~ 71 (156)
-|..+|+.|..|++|....+ .=.+|+|. .|...|.++
T Consensus 48 ~C~~~g~~Y~IGetW~k~~~~~~~~~~CtClGngkGew~C~p~ 90 (90)
T 2cg7_A 48 RCHEGGQSYKIGDTWRRPHETGGYMLECVCLGNGKGEWTCKPI 90 (90)
T ss_dssp EEEETTEEEETTCEEEEECTTSSSEEEEEEEETTTTEEEEEEC
T ss_pred eeeeCCcEEecCceEeeccccCCceEEEEEeCCCcccEEeeeC
Confidence 48899999999999987422 25689998 466888764
No 16
>2ec3_A Fibronectin; complement module, two disulfide bonds, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=76.72 E-value=2 Score=27.86 Aligned_cols=38 Identities=21% Similarity=0.364 Sum_probs=29.3
Q ss_pred CccccCCEEecCCCeEeCCCCC--ceEEEec---CCceEEEee
Q psy11988 34 QGCVHHGVFRESGSEWTDPDNP--CRIFTCK---AGVVTETEM 71 (156)
Q Consensus 34 ~~C~~~g~~y~~Ge~w~~~~d~--C~~C~C~---~G~v~C~~~ 71 (156)
+.|..+|+.|+.|++|....+. =..|+|. .|...|.+.
T Consensus 18 ~~C~d~G~~YrIGe~W~r~~e~G~mm~CtClGnGrGe~~C~~~ 60 (68)
T 2ec3_A 18 RWCHDNGVNYKIGEKWDRQGENGQMMSCTCLGNGKGEFKCDPH 60 (68)
T ss_dssp SCBCSSSCCBCTTCEEEEECSSSSEEEEEEEETTTTEEEEEEC
T ss_pred CceecCCeeEEcCceEeecccCCCEEEEEEecCCcccEEeeCc
Confidence 3588899999999999764332 5679998 467888865
No 17
>3m7p_A FN1 protein; fibronectin, extracellular matrix, modular protein, zinc BIN dimer, conformational change, cell adhesion; HET: NAG 12P; 2.50A {Homo sapiens} PDB: 3mql_A* 1e88_A* 1e8b_A* 1qo6_A 2fn2_A*
Probab=54.43 E-value=3.1 Score=34.41 Aligned_cols=67 Identities=10% Similarity=0.120 Sum_probs=42.5
Q ss_pred ccccCCEEecCCCeEeCCCC--CceEEEec---CCceEEEeeecCCCCCCCCCCCCCCCCCCCCCCCCCCEEecCCceec
Q psy11988 35 GCVHHGVFRESGSEWTDPDN--PCRIFTCK---AGVVTETEMQCYAPCKHPTPPGPGQCCPTCPGKRPYGLLYVAFGLLN 109 (156)
Q Consensus 35 ~C~~~g~~y~~Ge~w~~~~d--~C~~C~C~---~G~v~C~~~~Cp~~C~~~~~~~pG~CCp~C~~C~~~g~~y~~G~~~~ 109 (156)
.|..+|++|+.|++|....+ .=.+|+|. .|...|.+. ..|..+ ..+..|+-|++|.
T Consensus 221 ~C~~~g~~y~vg~~w~k~~e~G~~~~CtC~G~G~G~w~C~~~---d~C~~~----------------~~~~~y~vg~~w~ 281 (308)
T 3m7p_A 221 QCIVDDITYNVNDTFHKRHEEGHMLNCTCFGQGRGRWKCDPV---DQCQDS----------------ETGTFYQIGDSWE 281 (308)
T ss_dssp EEEEEEEEEECCCSSCCCEEEEEEEEEEC-------CEEECB---CEEECT----------------TTCCEEETTCEEE
T ss_pred eEEeCCeEEEcCceeeccccCCceEEEEEeCCCccCEEeecc---hhhccC----------------CCCcEEEcCCccc
Confidence 48889999999999986321 23478887 366788754 122221 1478999999998
Q ss_pred CCCCCCceeec
Q psy11988 110 ATFGPPHVASG 120 (156)
Q Consensus 110 ~~~~c~~~~c~ 120 (156)
...+=+.+.|-
T Consensus 282 k~~~g~~~~c~ 292 (308)
T 3m7p_A 282 KYVHGVRYQCY 292 (308)
T ss_dssp EEETTEEEEEE
T ss_pred ccccceEEEeE
Confidence 76544444443
No 18
>2rl0_A Fibronectin; 4F15F1, beta zipper, staphylococcus aureus, acute phase, alternative splicing, cell adhesion, extracellular matrix; 2.00A {Homo sapiens} SCOP: g.27.1.1 g.27.1.1 PDB: 1fbr_A 2rky_A
Probab=40.93 E-value=26 Score=23.79 Aligned_cols=36 Identities=14% Similarity=0.266 Sum_probs=25.5
Q ss_pred CccccC--CEEecCCCeEeCC--CCCceEEEec---CCceEEE
Q psy11988 34 QGCVHH--GVFRESGSEWTDP--DNPCRIFTCK---AGVVTET 69 (156)
Q Consensus 34 ~~C~~~--g~~y~~Ge~w~~~--~d~C~~C~C~---~G~v~C~ 69 (156)
.-|..+ |+.|+.|++|+.. ...=.+|+|. .|...|.
T Consensus 46 ~~C~D~~tG~~Y~iGetW~k~~~~G~~~~C~C~GngrGew~Ce 88 (89)
T 2rl0_A 46 NRCNDQDTRTSYRIGDTWSKKDNRGNLLQCICTGNGRGEWKCE 88 (89)
T ss_dssp TEEEETTTTEEEETTCEEEEECSSSCEEEEEEEETTTTEEEEE
T ss_pred CcccccCCceEEEcCceeecCccCCcEEEEEEeCCCceeEEec
Confidence 357766 8999999999853 2235678887 3556665
No 19
>4b2u_A S67; toxin, ICK; NMR {Sicarius dolichocephalus}
Probab=40.65 E-value=13 Score=20.51 Aligned_cols=27 Identities=26% Similarity=0.609 Sum_probs=14.9
Q ss_pred CCCCC-CCCcccccccCCCcCCCCCccccCCEEe
Q psy11988 11 CPNQE-GCHKLLEAKEKDGCCRKCQGCVHHGVFR 43 (156)
Q Consensus 11 Cp~~~-~C~~~v~~~~~g~CCP~C~~C~~~g~~y 43 (156)
|-.+. .|++|. +|.+| |-.|+.+|+.|
T Consensus 4 cielgercpnpr----egdwc--chkcvpegkrf 31 (36)
T 4b2u_A 4 CIELGERCPNPR----EGDWC--CHKCVPEGKRF 31 (36)
T ss_dssp SCCTTSBCCCGG----GCCSS--SSEEEEETTEE
T ss_pred eeeccccCcCCC----ccCee--eecccccCcee
Confidence 44444 677776 55544 33466666544
No 20
>2j5h_A Teratocarcinoma-derived growth factor; hormone/growth factor, EGF-CFC family, cripto, tumour progression, cysteine-rich domains; NMR {Mus musculus} SCOP: g.3.11.7
Probab=29.82 E-value=9.2 Score=22.35 Aligned_cols=24 Identities=17% Similarity=0.454 Sum_probs=19.5
Q ss_pred eEeCCCCCceEEEecCCceEEEeeec
Q psy11988 48 EWTDPDNPCRIFTCKAGVVTETEMQC 73 (156)
Q Consensus 48 ~w~~~~d~C~~C~C~~G~v~C~~~~C 73 (156)
.|.. ..|..|+|..|...|.+.+=
T Consensus 12 ~W~~--k~C~LCRC~~G~LhCfp~~~ 35 (41)
T 2j5h_A 12 TWLP--KKCSLCRCWHGQLHCLPQTF 35 (41)
T ss_dssp TCSS--CCCCCCCCCSSSCCSCCSSS
T ss_pred Ceee--cCceEEEeecCceEEccccc
Confidence 5777 67999999999999886543
No 21
>1bx7_A Hirustasin; anti-coagulant, peptidic inhibitors, conformational flexibility, serine protease inhibitor; 1.20A {Hirudo medicinalis} SCOP: g.3.15.1 PDB: 1bx8_A 1hia_I
Probab=25.97 E-value=83 Score=19.29 Aligned_cols=31 Identities=23% Similarity=0.431 Sum_probs=21.9
Q ss_pred EecCCceEEEeeecCCCCCCCCCCCCCCCCCC
Q psy11988 60 TCKAGVVTETEMQCYAPCKHPTPPGPGQCCPT 91 (156)
Q Consensus 60 ~C~~G~v~C~~~~Cp~~C~~~~~~~pG~CCp~ 91 (156)
.|..++-.|..+.|-+-|+++. ..+..-|+.
T Consensus 16 ~c~~~kcvC~~~~Cri~Cp~GF-k~DeNGCe~ 46 (55)
T 1bx7_A 16 VCLKGKCVCNEVHCRIRCKYGL-KKDENGCEY 46 (55)
T ss_dssp EEETTEEEECCCCCCCCCTTCB-CCCTTSCCC
T ss_pred EEecCcEEeehhheEEeCCCcc-eECCCCCcc
Confidence 4577888888888888899887 444444444
No 22
>1dml_A DNA polymerase processivity factor; herpes simplex virus, DNA synthesis, sliding clamps, PCNA, processivity, DNA binding protein/transferase complex; HET: DNA; 2.70A {Human herpesvirus 1} SCOP: d.131.1.2 d.131.1.2
Probab=21.09 E-value=15 Score=30.46 Aligned_cols=23 Identities=43% Similarity=0.813 Sum_probs=18.6
Q ss_pred hHhhhh--hhhheeeeeeccccccC
Q psy11988 134 GFLVLS--FGFQAFLTLKLGRFVSY 156 (156)
Q Consensus 134 ~~~~~~--~~~~~~~~~~~~~~~~~ 156 (156)
|+||+. ||+|.|+.|..-.|.+|
T Consensus 65 GllIh~sv~gEQVyvPi~~~~FS~Y 89 (319)
T 1dml_A 65 GILIHNTIFGEQVFLPLEHSQFSRY 89 (319)
T ss_dssp EEEEEEEETTEEEEEEEEGGGSSEE
T ss_pred ceEEEeeecceEEEEEcChHhcccc
Confidence 555553 89999999999988877
Done!