RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy11988
         (156 letters)



>d1u5ma_ g.27.1.2 (A:) Collagen alpha 1(II) chain precursor {Human
          (Homo sapiens) [TaxId: 9606]}
          Length = 73

 Score = 53.4 bits (128), Expect = 5e-11
 Identities = 21/70 (30%), Positives = 26/70 (37%), Gaps = 5/70 (7%)

Query: 30 CRKCQGCVHHGVFRESGSEWTDPDNPCRIFTCKAGVVTETEMQC--YAPCKHPTPPGPGQ 87
           ++   CV  G        W     PCRI  C  G V   ++ C     C  P  P  G+
Sbjct: 4  FQEAGSCVQDGQRYNDKDVWKP--EPCRICVCDTGTVLCDDIICEDVKDCLSPEIP-FGE 60

Query: 88 CCPTCPGKRP 97
          CCP CP    
Sbjct: 61 CCPICPADLA 70



 Score = 23.4 bits (50), Expect = 6.0
 Identities = 8/35 (22%), Positives = 11/35 (31%), Gaps = 2/35 (5%)

Query: 1  NGFVECNRKSCPNQEGCHKLLEAKEKDGCCRKCQG 35
           G V C+   C + + C           CC  C  
Sbjct: 35 TGTVLCDDIICEDVKDCLS--PEIPFGECCPICPA 67


>d1gvkb_ b.47.1.2 (B:) Elastase {Pig (Sus scrofa) [TaxId: 9823]}
          Length = 240

 Score = 26.3 bits (56), Expect = 1.7
 Identities = 9/68 (13%), Positives = 17/68 (25%)

Query: 29  CCRKCQGCVHHGVFRESGSEWTDPDNPCRIFTCKAGVVTETEMQCYAPCKHPTPPGPGQC 88
             R      ++     +G   T  +        +A + T     C +     +       
Sbjct: 114 LPRAGTILANNSPCYITGWGLTRTNGQLAQTLQQAYLPTVDYAICSSSSYWGSTVKNSMV 173

Query: 89  CPTCPGKR 96
           C    G R
Sbjct: 174 CAGGDGVR 181


>d1z0na1 b.1.18.21 (A:77-163) 5'-AMP-activated protein kinase
          subunit beta-1 {Rattus norvegicus [TaxId: 10116]}
          Length = 87

 Score = 23.7 bits (51), Expect = 6.5
 Identities = 6/21 (28%), Positives = 6/21 (28%)

Query: 36 CVHHGVFRESGSEWTDPDNPC 56
            H   F   G    DP  P 
Sbjct: 45 GEHQYKFFVDGQWTHDPSEPI 65


>d1wpla_ d.96.1.1 (A:) GTP cyclohydrolase I {Rat (Rattus norvegicus)
           [TaxId: 10116]}
          Length = 194

 Score = 24.1 bits (52), Expect = 7.5
 Identities = 7/35 (20%), Positives = 15/35 (42%), Gaps = 1/35 (2%)

Query: 64  GVVTETEMQCYAPCKHPTPPGPGQC-CPTCPGKRP 97
            +V   ++  ++ C+H   P  G+      P K+ 
Sbjct: 72  EMVIVKDIDMFSMCEHHLVPFVGRVHIGYLPNKQV 106


>d2piaa3 d.15.4.2 (A:224-321) Phthalate dioxygenase reductase,
          C-terminal domain {Pseudomonas cepacia, db01 [TaxId:
          292]}
          Length = 98

 Score = 23.3 bits (50), Expect = 8.0
 Identities = 7/49 (14%), Positives = 16/49 (32%)

Query: 15 EGCHKLLEAKEKDGCCRKCQGCVHHGVFRESGSEWTDPDNPCRIFTCKA 63
             +  + +  + G C  C+  +  G          D +   +I  C +
Sbjct: 39 RDANVRVPSSCESGTCGSCKTALCSGEADHRDMVLRDDEKGTQIMVCVS 87


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.326    0.143    0.499 

Gapped
Lambda     K      H
   0.267   0.0603    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 636,241
Number of extensions: 30678
Number of successful extensions: 152
Number of sequences better than 10.0: 1
Number of HSP's gapped: 136
Number of HSP's successfully gapped: 36
Length of query: 156
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 78
Effective length of database: 1,336,656
Effective search space: 104259168
Effective search space used: 104259168
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 49 (22.9 bits)