Query psy11989
Match_columns 342
No_of_seqs 324 out of 1403
Neff 4.7
Searched_HMMs 29240
Date Fri Aug 16 15:45:11 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11989.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/11989hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3v5u_A Uncharacterized membran 99.9 2.2E-26 7.5E-31 222.2 5.4 192 56-286 4-304 (320)
2 3v5u_A Uncharacterized membran 99.9 7.3E-25 2.5E-29 211.6 2.4 128 142-286 18-146 (320)
3 3kxt_A Chromatin protein CREN7 11.6 1.1E+02 0.0039 22.3 1.9 20 87-106 2-22 (56)
4 2xa6_A KH domain-containing\,R 3.9 2.6E+02 0.0087 19.3 0.5 23 316-338 6-28 (41)
5 2lx0_A Membrane fusion protein 3.3 3.2E+02 0.011 17.4 0.5 11 166-176 12-22 (32)
6 2jln_A MHP1; hydantoin, transp 2.9 5.3E+02 0.018 25.3 1.8 12 273-284 436-447 (501)
7 2kvc_A Putative uncharacterize 2.8 6.4E+02 0.022 20.3 1.9 18 119-136 1-18 (103)
8 1k2d_P MBP peptide, myelin bas 2.7 4.4E+02 0.015 16.1 0.6 10 328-337 7-16 (26)
9 1yzs_A Sulfiredoxin; PARB doma 2.5 5.5E+02 0.019 21.1 1.2 52 73-125 47-120 (121)
10 4art_A Structural protein ORF2 2.5 4.4E+02 0.015 23.6 0.6 11 326-336 265-275 (279)
No 1
>3v5u_A Uncharacterized membrane protein MJ0091; lipid cubic phase, cation protein complex, sodium,calcium EX membrane protein; HET: OLC MYS 1PE; 1.90A {Methanocaldococcus jannaschii} PDB: 3v5s_A*
Probab=99.92 E-value=2.2e-26 Score=222.21 Aligned_cols=192 Identities=20% Similarity=0.239 Sum_probs=149.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhHHHHhccceeeEEecCCCccceeeeeeehhhhhhHHHHhhcCchhHHHHHHHHHhcC
Q psy11989 56 VYMVLLIYFFLGVSIISDRFMSAIEVITSQEREVSVTNKAGTRHKVTVRVWNETVANLTLMALGSSAPEILLSVIEIWGK 135 (342)
Q Consensus 56 ly~~~lly~F~~l~iv~d~F~~sl~~I~~~~~~~~~~~~~g~~~~~~~~~~~~~VagLtlma~g~s~PEl~~s~I~~~~~ 135 (342)
+.++.++.-+..+..-+|.|+++.+.++++.+ .+|.+.|+|++|+|||+||+++|+++....
T Consensus 4 ~~~~~l~~g~~~l~~~a~~lv~~~~~la~~lg------------------is~~viGltiva~GTSlPEl~vsi~A~~~g 65 (320)
T 3v5u_A 4 LGVGYFLLGLILLYYGSDWFVLGSERIARHFN------------------VSNFVIGATVMAIGTSLPEILTSAYASYMH 65 (320)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT------------------BCHHHHHHTHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC------------------cCHHHHHHHHHHHHcccHHHHHHHHHHhCC
Confidence 34444555666667777779999999999853 679999999999999999999998875542
Q ss_pred ccccCCC-------------------------------------------------------------------------
Q psy11989 136 GFSAGEL------------------------------------------------------------------------- 142 (342)
Q Consensus 136 ~~~~~d~------------------------------------------------------------------------- 142 (342)
++|.
T Consensus 66 ---~~diaiGnivGSni~nillvlG~~~li~p~~v~~~~~~d~~~~l~~~~~l~~~~~~gis~~~g~~Ll~~Y~~yl~~~ 142 (320)
T 3v5u_A 66 ---APGISIGNAIGSCICNIGLVLGLSAIISPIIVDKNLQKNILVYLLFVIFAAVIGIDGFSWIDGVVLLILFIIYLRWT 142 (320)
T ss_dssp ---CHHHHHHHHHHHHHHHHHTHHHHHHHHSCBCCCHHHHHHHHHHHHHHHHHHHHTTTCBCHHHHHHHHHHHHHHHHHH
T ss_pred ---CCceeeeeecchHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHH
Confidence 1221
Q ss_pred -----------------------------------CcceeeeccccccccccccccCcchhhhhhhhhcCChhHHHHHHH
Q psy11989 143 -----------------------------------GPNASVTNKAGTRHKVTVRVWNETVANLTLMALGSSAPEILLSVI 187 (342)
Q Consensus 143 -----------------------------------Ga~~lV~~a~~iA~~lgV~vlSe~VaGaT~vA~GTSaPEL~tSIi 187 (342)
|++++|++++.+++.+|+ ||.++|+|++|+|||+||+++|+.
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~a~~lv~~~~~ia~~~gi---s~~~iGltlva~gtslPE~~~sv~ 219 (320)
T 3v5u_A 143 VKNGSAEIEENNDKNNPSVVFSLVLLIIGLIGVLVGAELFVDGAKKIALALDI---SDKVIGFTLVAFGTSLPELMVSLA 219 (320)
T ss_dssp HHHTBC-------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC---CCHHHHHHTHHHHHTHHHHHHHHH
T ss_pred HHhcccccccccccccccHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHhCC---chHHHHHHHHHHHhccHHHHHHHH
Confidence 233333555666667777 999999999999999999999999
Q ss_pred HHHhcCCCCCCccchhhhhhhHHHHHHHHHhhheeccCCceeeecceeEEEehhhHHHHHHHHHHHHHHHhcCCeehhHH
Q psy11989 188 EIWGKGFSAGELGPGTIVGSAAYNLFVIIALCVAVIPNGEVRKIKHLRVFFVTATWSVFAYIWLYAILAVFSPGIVEVWE 267 (342)
Q Consensus 188 Aa~~~~~g~~dIgvGnIVGSnIFNillIlGv~~Li~p~~~~~~I~~~~v~rD~~~~~l~~yi~llll~~v~~~g~It~~E 267 (342)
+++ +++.|+++||++|||+||+++++|+++++.|. +++ .||. +++. ...+++..+.++++++|||
T Consensus 220 aa~---~g~~~laig~iiGS~ifn~~~v~g~~~li~p~----~~~----~~d~---~~~l-~~~~ll~~~~~~~~i~~~e 284 (320)
T 3v5u_A 220 AAK---RNLGGMVLGNVIGSNIADIGGALAVGSLFMHL----PAE----NVQM---AVLV-IMSLLLYLFAKYSKIGRWQ 284 (320)
T ss_dssp HHH---TTCHHHHHHHHHHHHHHHHHTHHHHHHHHSCB----CCC----HHHH---HHHH-HHHHHHHHHHHHSCBSHHH
T ss_pred HHH---cCCCcHHHHHHHhHHHHHHHHHHHHHHhhccc----cch----HHHH---HHHH-HHHHHHHHHHhCCcCcHHH
Confidence 998 89999999999999999999999999998763 232 4562 1221 1122233367799999999
Q ss_pred HHHHHHHHHH-HHHHHHhcc
Q psy11989 268 GLLTFLFFPA-TVLTAYFAD 286 (342)
Q Consensus 268 gllLLllY~~-YV~~~~~~d 286 (342)
|++++.+|+. |+.+.+...
T Consensus 285 G~~ll~~Y~~~y~~~~~~~~ 304 (320)
T 3v5u_A 285 GILFLALYIIAIASLRMGGG 304 (320)
T ss_dssp HHHHHHHHHHHHHHSCSSCC
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 9999999999 998876433
No 2
>3v5u_A Uncharacterized membrane protein MJ0091; lipid cubic phase, cation protein complex, sodium,calcium EX membrane protein; HET: OLC MYS 1PE; 1.90A {Methanocaldococcus jannaschii} PDB: 3v5s_A*
Probab=99.89 E-value=7.3e-25 Score=211.60 Aligned_cols=128 Identities=20% Similarity=0.274 Sum_probs=108.3
Q ss_pred CCcceeeeccccccccccccccCcchhhhhhhhhcCChhHHHHHHHHHHhcCCCCCCccchhhhhhhHHHHHHHHHhhhe
Q psy11989 142 LGPNASVTNKAGTRHKVTVRVWNETVANLTLMALGSSAPEILLSVIEIWGKGFSAGELGPGTIVGSAAYNLFVIIALCVA 221 (342)
Q Consensus 142 ~Ga~~lV~~a~~iA~~lgV~vlSe~VaGaT~vA~GTSaPEL~tSIiAa~~~~~g~~dIgvGnIVGSnIFNillIlGv~~L 221 (342)
+|+|+++++++.+|+++|+ ||.++|+|++|+|||+||+++|+.|++ ++++|+++||++|||+||+++++|+|++
T Consensus 18 ~~a~~lv~~~~~la~~lgi---s~~viGltiva~GTSlPEl~vsi~A~~---~g~~diaiGnivGSni~nillvlG~~~l 91 (320)
T 3v5u_A 18 YGSDWFVLGSERIARHFNV---SNFVIGATVMAIGTSLPEILTSAYASY---MHAPGISIGNAIGSCICNIGLVLGLSAI 91 (320)
T ss_dssp HHHHHHHHHHHHHHHHHTB---CHHHHHHTHHHHHHHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCc---CHHHHHHHHHHHHcccHHHHHHHHHHh---CCCCceeeeeecchHHHHHHHHHHHHHH
Confidence 6899999999999999999 999999999999999999999999998 8899999999999999999999999999
Q ss_pred eccCCceeeecceeEEEehhhHHHHHHHH-HHHHHHHhcCCeehhHHHHHHHHHHHHHHHHHHhcc
Q psy11989 222 VIPNGEVRKIKHLRVFFVTATWSVFAYIW-LYAILAVFSPGIVEVWEGLLTFLFFPATVLTAYFAD 286 (342)
Q Consensus 222 i~p~~~~~~I~~~~v~rD~~~~~l~~yi~-llll~~v~~~g~It~~EgllLLllY~~YV~~~~~~d 286 (342)
+.|. ++ ++.+.||. .+++. ..++..+.+++ ++||||++++.+|+.|+.+.++.+
T Consensus 92 i~p~----~v-~~~~~~d~-----~~~l~~~~~l~~~~~~g-is~~~g~~Ll~~Y~~yl~~~~~~~ 146 (320)
T 3v5u_A 92 ISPI----IV-DKNLQKNI-----LVYLLFVIFAAVIGIDG-FSWIDGVVLLILFIIYLRWTVKNG 146 (320)
T ss_dssp HSCB----CC-CHHHHHHH-----HHHHHHHHHHHHHTTTC-BCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred Hccc----cc-cHHHHHHH-----HHHHHHHHHHHHHHHcc-cHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9773 33 33555772 22222 22334455688 999999999999999999886543
No 3
>3kxt_A Chromatin protein CREN7; protein-DNA complex, crenarchaea chromatin protein, minor-GR binding, methylation; 1.60A {Sulfolobus solfataricus} PDB: 2jtm_A 3lwh_A* 3lwi_A*
Probab=11.56 E-value=1.1e+02 Score=22.28 Aligned_cols=20 Identities=35% Similarity=0.682 Sum_probs=15.1
Q ss_pred eeeEEecCCCccce-eeeeee
Q psy11989 87 REVSVTNKAGTRHK-VTVRVW 106 (342)
Q Consensus 87 ~~~~~~~~~g~~~~-~~~~~~ 106 (342)
+.|++++|+|.+.. ...++|
T Consensus 2 ~~vkvk~p~G~e~~L~P~KvW 22 (56)
T 3kxt_A 2 KPVKVKTPAGKEAELVPEKVW 22 (56)
T ss_dssp CCEEEECTTSCEEEECCSEEE
T ss_pred CceEeeCCCCCEEEEeeeEEE
Confidence 57899999988654 456777
No 4
>2xa6_A KH domain-containing\,RNA-binding\,signal transduction-associated protein 1; transcription, STAR proteins, CD44, cell cycle; NMR {Homo sapiens}
Probab=3.87 E-value=2.6e+02 Score=19.26 Aligned_cols=23 Identities=35% Similarity=0.564 Sum_probs=18.2
Q ss_pred ChhhHHHHHhhhcCCCCCCccee
Q psy11989 316 EKDVEEEILEENESLRPSSRHTL 338 (342)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~ 338 (342)
+.+--.+++.|.+++.||..|..
T Consensus 6 ~~kyLpeL~aEk~sLdPsf~Ha~ 28 (41)
T 2xa6_A 6 ENKYLPELMAEKDSLDPSFTHAM 28 (41)
T ss_dssp HHHHHHHHHHHHHHSCTTCHHHH
T ss_pred HHHHHHHHHhhhhccCchHHHHH
Confidence 44556788889999999998864
No 5
>2lx0_A Membrane fusion protein P14; membrane fusion protein transmembrane domain, P14 fast prote ARCH, micelle-peptide complex, membrane protein; NMR {Synthetic}
Probab=3.27 E-value=3.2e+02 Score=17.40 Aligned_cols=11 Identities=55% Similarity=0.721 Sum_probs=7.6
Q ss_pred chhhhhhhhhc
Q psy11989 166 TVANLTLMALG 176 (342)
Q Consensus 166 ~VaGaT~vA~G 176 (342)
.|+=+||+|||
T Consensus 12 lvalltflafg 22 (32)
T 2lx0_A 12 LVALLTFLAFG 22 (32)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 35557888887
No 6
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A
Probab=2.88 E-value=5.3e+02 Score=25.28 Aligned_cols=12 Identities=0% Similarity=-0.075 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHh
Q psy11989 273 LFFPATVLTAYF 284 (342)
Q Consensus 273 llY~~YV~~~~~ 284 (342)
+..++|......
T Consensus 436 va~v~Y~~l~~~ 447 (501)
T 2jln_A 436 AALLLHIPAMRW 447 (501)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 334556555543
No 7
>2kvc_A Putative uncharacterized protein; structural genomics, seattle structural genomi for infectious disease, ssgcid, unknown function; NMR {Mycobacterium tuberculosis}
Probab=2.81 E-value=6.4e+02 Score=20.34 Aligned_cols=18 Identities=28% Similarity=0.412 Sum_probs=12.7
Q ss_pred cCchhHHHHHHHHHhcCc
Q psy11989 119 GSSAPEILLSVIEIWGKG 136 (342)
Q Consensus 119 g~s~PEl~~s~I~~~~~~ 136 (342)
|+++|-++.|++.|+-.+
T Consensus 1 ~~~~~~~l~siv~WLRaG 18 (103)
T 2kvc_A 1 GSHMNRFLTSIVAWLRAG 18 (103)
T ss_dssp CCCHHHHHHHHHHHHHHH
T ss_pred CCcccHHHHHHHHHHHcc
Confidence 567777777777777653
No 8
>1k2d_P MBP peptide, myelin basic protein peptide with 8 residue linke; MHC class II, I-AU, H-2U, autoimmune disease; HET: NDG NAG; 2.20A {Mus musculus}
Probab=2.66 E-value=4.4e+02 Score=16.14 Aligned_cols=10 Identities=50% Similarity=0.823 Sum_probs=6.7
Q ss_pred cCCCCCCcce
Q psy11989 328 ESLRPSSRHT 337 (342)
Q Consensus 328 ~~~~~~~~~~ 337 (342)
...|||.||-
T Consensus 7 sq~rpsqrhg 16 (26)
T 1k2d_P 7 SQYRPSQRHG 16 (26)
T ss_pred cccCcccccc
Confidence 3467888874
No 9
>1yzs_A Sulfiredoxin; PARB domain fold, oxidoreductase; NMR {Homo sapiens} SCOP: d.268.1.4 PDB: 2b6f_A*
Probab=2.52 E-value=5.5e+02 Score=21.11 Aligned_cols=52 Identities=19% Similarity=0.383 Sum_probs=35.0
Q ss_pred hhhhhhHHHHhccceeeEEec---CC-Cc------------------cceeeeeeehhhhhhHHHHhhcCchhHH
Q psy11989 73 DRFMSAIEVITSQEREVSVTN---KA-GT------------------RHKVTVRVWNETVANLTLMALGSSAPEI 125 (342)
Q Consensus 73 d~F~~sl~~I~~~~~~~~~~~---~~-g~------------------~~~~~~~~~~~~VagLtlma~g~s~PEl 125 (342)
+.+|.||+.+.-+.+-|.+.. .+ |. +.+.+-+++..+-.-+.+ =+|+|.|+|
T Consensus 47 ~eL~eSI~~~Gl~~~PI~V~~~~g~~gg~~Y~l~~G~hRleA~k~LG~~tI~A~vv~~t~~~l~~-ylg~s~~~~ 120 (121)
T 1yzs_A 47 QSLVDTIREDPDSVPPIDVLWIKGAQGGDYFYSFGGCHRYAAYQQLQRETIPAKLVQSTLSDLRV-YLGASTPDL 120 (121)
T ss_dssp HHHHHHHHHCGGGSCCEEEEEEECTTSCEEEECCSCHHHHHHHHHTTCSEEEEEEEECCHHHHHH-HHTTTCCCC
T ss_pred HHHHHHHHhcCCCCCCeEEEEeccCCCCceEEEEecchHHHHHHHcCcCcccEEEEcCCHHHHHH-HhccCCccc
Confidence 346888888776644555532 22 22 346667888888888885 589999984
No 10
>4art_A Structural protein ORF273; viral protein, archaeal virus, extremophiles, bicaudavirus, hyper-thermostability; HET: SO4; 2.15A {Acidianus two-tailed virus} PDB: 4ats_A
Probab=2.48 E-value=4.4e+02 Score=23.64 Aligned_cols=11 Identities=55% Similarity=0.815 Sum_probs=0.0
Q ss_pred hhcCCCCCCcc
Q psy11989 326 ENESLRPSSRH 336 (342)
Q Consensus 326 ~~~~~~~~~~~ 336 (342)
+-++++|||||
T Consensus 265 klerlkpsshh 275 (279)
T 4art_A 265 KLERLKPSSHH 275 (279)
T ss_dssp HHTTCC-----
T ss_pred eecccCCcccc
Done!