Query psy11989
Match_columns 342
No_of_seqs 324 out of 1403
Neff 4.7
Searched_HMMs 13730
Date Fri Aug 16 15:45:19 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11989.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/11989hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1rh5c_ f.23.29.1 (C:) Sec-bet 5.0 66 0.0048 19.1 -0.1 13 160-172 6-18 (32)
2 d1qgoa_ c.92.1.2 (A:) Cobalt c 4.2 1.1E+02 0.0084 24.8 0.8 19 169-187 3-21 (257)
3 d2r6gf1 e.70.1.1 (F:13-260) Ma 4.1 8.6E+02 0.063 19.8 6.7 26 255-280 43-71 (248)
4 d2d69a2 d.58.9.1 (A:8-133) Rib 3.1 2.3E+02 0.017 21.8 1.6 13 175-187 86-99 (126)
5 d1rh5a_ f.41.1.1 (A:) Preprote 3.0 1.3E+03 0.096 19.7 7.3 58 28-87 289-349 (422)
6 d5ruba2 d.58.9.1 (A:2-137) Rib 2.9 2.8E+02 0.02 21.2 1.9 13 175-187 96-108 (136)
7 d1jw3a_ d.208.1.1 (A:) Hypothe 2.6 2.9E+02 0.021 20.8 1.7 17 173-189 16-32 (140)
8 d1geha2 d.58.9.1 (A:12-136) Ri 2.5 3.1E+02 0.022 20.9 1.7 13 175-187 85-98 (125)
9 d2e74g1 f.23.26.1 (G:9-35) Pet 2.5 5E+02 0.036 14.6 2.2 14 3-16 2-15 (27)
10 d3b60a2 f.37.1.1 (A:10-328) Mu 2.3 5.4E+02 0.039 19.4 3.1 29 264-292 155-183 (319)
No 1
>d1rh5c_ f.23.29.1 (C:) Sec-beta subunit {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=4.97 E-value=66 Score=19.07 Aligned_cols=13 Identities=38% Similarity=0.493 Sum_probs=10.1
Q ss_pred ccccCcchhhhhh
Q psy11989 160 VRVWNETVANLTL 172 (342)
Q Consensus 160 V~vlSe~VaGaT~ 172 (342)
+|+=||.|+|+|+
T Consensus 6 irvkpehvigvtv 18 (32)
T d1rh5c_ 6 IRVKPEHVIGVTV 18 (32)
T ss_dssp CCCCHHHHHHHHH
T ss_pred eeeccceEEEEEE
Confidence 3556999999986
No 2
>d1qgoa_ c.92.1.2 (A:) Cobalt chelatase CbiK {Salmonella typhimurium [TaxId: 90371]}
Probab=4.21 E-value=1.1e+02 Score=24.81 Aligned_cols=19 Identities=21% Similarity=0.275 Sum_probs=14.2
Q ss_pred hhhhhhhcCChhHHHHHHH
Q psy11989 169 NLTLMALGSSAPEILLSVI 187 (342)
Q Consensus 169 GaT~vA~GTSaPEL~tSIi 187 (342)
|+.++++||+-||-.-..+
T Consensus 3 aillv~fGs~~~e~~~~~i 21 (257)
T d1qgoa_ 3 ALLVVSFGTSYHDTCEKNI 21 (257)
T ss_dssp EEEEEECCCSCHHHHHHHH
T ss_pred EEEEEeCCCCchhhHHHHH
Confidence 4567899999998865433
No 3
>d2r6gf1 e.70.1.1 (F:13-260) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=4.10 E-value=8.6e+02 Score=19.82 Aligned_cols=26 Identities=15% Similarity=0.147 Sum_probs=15.6
Q ss_pred HHHhcCCeeh---hHHHHHHHHHHHHHHH
Q psy11989 255 LAVFSPGIVE---VWEGLLTFLFFPATVL 280 (342)
Q Consensus 255 ~~v~~~g~It---~~EgllLLllY~~YV~ 280 (342)
+++++++.+. ..-|++++++|.+|-+
T Consensus 43 ~vy~s~r~~p~kyi~PG~~~l~~Fvi~Pi 71 (248)
T d2r6gf1 43 YIFANRKAYAWRYVYPGMAGMGLFVLFPL 71 (248)
T ss_dssp HHHSSSCCTTHHHHHHHHHHHHHHTHHHH
T ss_pred EEEEccCccceehhhhHHHHHHHHHHHhh
Confidence 4444454443 2468888888777653
No 4
>d2d69a2 d.58.9.1 (A:8-133) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Probab=3.14 E-value=2.3e+02 Score=21.75 Aligned_cols=13 Identities=15% Similarity=0.230 Sum_probs=10.1
Q ss_pred hc-CChhHHHHHHH
Q psy11989 175 LG-SSAPEILLSVI 187 (342)
Q Consensus 175 ~G-TSaPEL~tSIi 187 (342)
|. .|+|-+++|++
T Consensus 86 FEeGsv~nlltsI~ 99 (126)
T d2d69a2 86 FEEGSLVQLFSAVA 99 (126)
T ss_dssp SCTTCHHHHHHHHT
T ss_pred cCccchhhHHHHhh
Confidence 55 48999988877
No 5
>d1rh5a_ f.41.1.1 (A:) Preprotein translocase SecY subunit {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=2.96 E-value=1.3e+03 Score=19.74 Aligned_cols=58 Identities=16% Similarity=0.228 Sum_probs=25.5
Q ss_pred CCCCCCccccccCCCcccccccchhhhHHHHHHHHHHHHHHHHHHh---hhhhhHHHHhccce
Q psy11989 28 SQCQDGIILSFWDAEGEMTTLDRVMRGVVYMVLLIYFFLGVSIISD---RFMSAIEVITSQER 87 (342)
Q Consensus 28 ~~c~~~~~~~~~~~~~~~~~~~~~~~~~ly~~~lly~F~~l~iv~d---~F~~sl~~I~~~~~ 87 (342)
.+..+++...++.|...-+........++|.+..+.+.+..+.--= .|-| +.+++++|
T Consensus 289 ~~~~~~i~~~~~~~~~~~~~~~~p~~~~~Y~i~~~~l~i~Fs~f~~~~~~~~p--~~iAe~lk 349 (422)
T d1rh5a_ 289 GRAVDGIAYYLSTPYGLSSVISDPIHAIVYMIAMIITCVMFGIFWVETTGLDP--KSMAKRIG 349 (422)
T ss_dssp SSBSSSTTGGGCCCCSSSCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHTCSH--HHHHHHC-
T ss_pred CchHHHHHHHhCCcchhhccccCccchHHHHHHHHHHHHHHHHHHHHHhCCCH--HHHHHHHH
Confidence 3445666666665544322223334455555443322222221111 1333 67778765
No 6
>d5ruba2 d.58.9.1 (A:2-137) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Rhodospirillum rubrum [TaxId: 1085]}
Probab=2.91 E-value=2.8e+02 Score=21.22 Aligned_cols=13 Identities=8% Similarity=-0.049 Sum_probs=11.7
Q ss_pred hcCChhHHHHHHH
Q psy11989 175 LGSSAPEILLSVI 187 (342)
Q Consensus 175 ~GTSaPEL~tSIi 187 (342)
+|.|+|-++++++
T Consensus 96 ~~~~i~~Llt~I~ 108 (136)
T d5ruba2 96 GKAMIASFLTLTM 108 (136)
T ss_dssp CCBCHHHHHHHHH
T ss_pred cCccHHHHHHHHH
Confidence 5899999999888
No 7
>d1jw3a_ d.208.1.1 (A:) Hypothetical protein MTH1598 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=2.63 E-value=2.9e+02 Score=20.80 Aligned_cols=17 Identities=18% Similarity=0.180 Sum_probs=13.6
Q ss_pred hhhcCChhHHHHHHHHH
Q psy11989 173 MALGSSAPEILLSVIEI 189 (342)
Q Consensus 173 vA~GTSaPEL~tSIiAa 189 (342)
-|.|.|+||+|.+.+-+
T Consensus 16 ~~~g~tleelf~~aa~a 32 (140)
T d1jw3a_ 16 WAYGHDLEEVFENAALA 32 (140)
T ss_dssp EEECSSSHHHHHHHHHH
T ss_pred EEEECCHHHHHHHHHHH
Confidence 38999999999876643
No 8
>d1geha2 d.58.9.1 (A:12-136) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Archaeon Thermococcus kodakaraensis [TaxId: 311400]}
Probab=2.51 E-value=3.1e+02 Score=20.89 Aligned_cols=13 Identities=23% Similarity=0.462 Sum_probs=10.6
Q ss_pred hcC-ChhHHHHHHH
Q psy11989 175 LGS-SAPEILLSVI 187 (342)
Q Consensus 175 ~GT-SaPEL~tSIi 187 (342)
|+. |.|-+++|++
T Consensus 85 Fe~gsv~nlltsi~ 98 (125)
T d1geha2 85 FEEANLPGLLASIA 98 (125)
T ss_dssp SCTTCHHHHHHHHT
T ss_pred cCCcchhHHHHHhh
Confidence 774 8999998877
No 9
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=2.47 E-value=5e+02 Score=14.55 Aligned_cols=14 Identities=36% Similarity=0.247 Sum_probs=10.0
Q ss_pred hhhHHHHHHHHHhc
Q psy11989 3 QLGLIVALLLVFAP 16 (342)
Q Consensus 3 ~~~~~~~~~~~~~~ 16 (342)
-+|||++.+..++.
T Consensus 2 vlgli~~tl~glf~ 15 (27)
T d2e74g1 2 VLGLVFATLGGLFY 15 (27)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred eeeehHHHHHHHHH
Confidence 47899888766543
No 10
>d3b60a2 f.37.1.1 (A:10-328) Multidrug resistance ABC transporter MsbA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]}
Probab=2.29 E-value=5.4e+02 Score=19.36 Aligned_cols=29 Identities=10% Similarity=0.151 Sum_probs=17.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHhccccchhh
Q psy11989 264 EVWEGLLTFLFFPATVLTAYFADKKLASH 292 (342)
Q Consensus 264 t~~EgllLLllY~~YV~~~~~~d~~l~~~ 292 (342)
+++-++++++..+++........++..+.
T Consensus 155 ~~~l~li~l~~~~~~~~~~~~~~~~~~~~ 183 (319)
T d3b60a2 155 SWQLSIILVVLAPIVSIAIRVVSKRFRSI 183 (319)
T ss_dssp TTTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccchhhhhhHHHHHHHHHHhhhhHHHHH
Confidence 45566666666666666665555554443
Done!