RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy11989
(342 letters)
>gnl|CDD|233149 TIGR00845, caca, sodium/calcium exchanger 1. The Ca2+:Cation
Antiporter (CaCA) Family (TC 2.A.19)Proteins of the CaCA
family are found ubiquitously, having been identified in
animals, plants, yeast, archaea and widely divergent
bacteria.All of the characterized animal proteins
catalyze Ca2+:Na+ exchange although some also transport
K+. The NCX1 plasma membrane protein exchanges 3 Na+ for
1 Ca2+. The E. coli ChaA protein catalyzes Ca2+:H+
antiport but may also catalyze Na+:H+ antiport. All
remaining well-characterized members of the family
catalyze Ca2+:H+ exchange.This model is specific for the
eukaryotic sodium ion/calcium ion exchangers of the Caca
family [Transport and binding proteins, Other].
Length = 928
Score = 351 bits (903), Expect = e-114
Identities = 150/334 (44%), Positives = 198/334 (59%), Gaps = 71/334 (21%)
Query: 2 LQLGLIVALLLV---FAPGFNIALE---NSTQSQ----CQDGIILSFWDAEGEMTTLDRV 51
L V+LL + A A N+ + C++G+IL W+ + + D++
Sbjct: 14 FHLLTAVSLLFLHVDHARALTEASSSGSNTGECTGSYYCKEGVILPIWEPQ-NPSVGDKI 72
Query: 52 MRGVVYMVLLIYFFLGVSIISDRFMSAIEVITSQEREVSVTNKAGTRHKVTVRVWNETVA 111
R VY V ++Y FLGVSII+DRFM++IEVITSQE+E+++
Sbjct: 73 ARATVYFVAMVYMFLGVSIIADRFMASIEVITSQEKEITIK------------------- 113
Query: 112 NLTLMALGSSAPEILLSVIEIWGKGFSAGELGPNASVTNKAGTRHKVTVRVWNETVANLT 171
PN G TVR+WNETV+NLT
Sbjct: 114 -------------------------------KPN-------GETTVTTVRIWNETVSNLT 135
Query: 172 LMALGSSAPEILLSVIEIWGKGFSAGELGPGTIVGSAAYNLFVIIALCVAVIPNGEVRKI 231
LMALGSSAPEILLSVIE+ G F AG+LGP TIVGSAA+N+F+IIA+CV VIP+GE RKI
Sbjct: 136 LMALGSSAPEILLSVIEVCGHNFEAGDLGPSTIVGSAAFNMFIIIAICVYVIPDGETRKI 195
Query: 232 KHLRVFFVTATWSVFAYIWLYAILAVFSPGIVEVWEGLLTFLFFPATVLTAYFADKKLAS 291
KHLRVFFVTA WSVFAY+WLY ILAVFSPG+VEVWEGLLTF FFP V+ A+ AD++L
Sbjct: 196 KHLRVFFVTAAWSVFAYVWLYLILAVFSPGVVEVWEGLLTFFFFPLCVVFAWVADRRLLF 255
Query: 292 HEF--KKFRLNKNR-VIVAAESGDIEMEKDVEEE 322
+++ K++R K R +I+ E + + ++E +
Sbjct: 256 YKYVYKRYRAGKQRGMIIETEGDRPKSKTEIEMD 289
>gnl|CDD|216653 pfam01699, Na_Ca_ex, Sodium/calcium exchanger protein. This is a
family of sodium/calcium exchanger integral membrane
proteins. This family covers the integral membrane
regions of the proteins. Sodium/calcium exchangers
regulate intracellular Ca2+ concentrations in many
cells; cardiac myocytes, epithelial cells, neurons
retinal rod photoreceptors and smooth muscle cells. Ca2+
is moved into or out of the cytosol depending on Na+
concentration. In humans and rats there are 3 isoforms;
NCX1 NCX2 and NCX3.
Length = 135
Score = 70.3 bits (173), Expect = 6e-15
Identities = 32/124 (25%), Positives = 60/124 (48%), Gaps = 9/124 (7%)
Query: 160 VRVWNETVANLTLMALGSSAPEILLSVIEIWGKGFSAGELGPGTIVGSAAYNLFVIIALC 219
V + TV LTL+ALG+S PE+ S+I +L G ++GS +N+ +++ L
Sbjct: 20 VLGISPTVIGLTLLALGTSLPELFSSIIAALKG---NADLALGNVIGSNLFNILLVLGLS 76
Query: 220 VAVIPNGEVRKIKHLRVFFVTATWSVFAYIWLYAILAVF-SPGIVEVWEGLLTFLFFPAT 278
+ P G + V ++ +S + L +L + S G + +EGL+ L +
Sbjct: 77 ALISPIGL-----KVLVSPLSLDFSFLLLVLLLLLLFLLLSDGRISRFEGLVLLLLYIVY 131
Query: 279 VLTA 282
++ +
Sbjct: 132 LVLS 135
Score = 37.2 bits (87), Expect = 0.003
Identities = 18/70 (25%), Positives = 29/70 (41%), Gaps = 18/70 (25%)
Query: 66 LGVSIISDRFMSAIEVITSQEREVSVTNKAGTRHKVTVRVWNETVANLTLMALGSSAPEI 125
L + +++D + + E I V + TV LTL+ALG+S PE+
Sbjct: 1 LLIILLADLLVDSAESIAE------------------VLGISPTVIGLTLLALGTSLPEL 42
Query: 126 LLSVIEIWGK 135
S+I
Sbjct: 43 FSSIIAALKG 52
>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger. [Transport and
binding proteins, Cations and iron carrying compounds].
Length = 1096
Score = 53.5 bits (128), Expect = 8e-08
Identities = 39/123 (31%), Positives = 57/123 (46%), Gaps = 19/123 (15%)
Query: 164 NETVANLTLMALGSSAPEILLSVIEIWGKGFSAGELGPGTIVGSAAYNLFVIIALCVAVI 223
+E VA T MA G SAPE+ S+I ++ S +G GTIVGSA +N+ +I C
Sbjct: 493 SEDVAGATFMAAGGSAPELFTSLIGVF---ISHSNVGIGTIVGSAVFNILFVIGTCALF- 548
Query: 224 PNGEVRKIKHLRVFFVTATWSVFAYIWLY-----AILAVFSPGIVEVWEGLLTFLFFPAT 278
R+I +L W +F + Y ++ F ++ WE LL L +
Sbjct: 549 ----SREILNL------TWWPLFRDVSFYILDLMMLILFFLDSLIAWWESLLLLLAYALY 598
Query: 279 VLT 281
V T
Sbjct: 599 VFT 601
Score = 35.0 bits (80), Expect = 0.070
Identities = 24/80 (30%), Positives = 42/80 (52%), Gaps = 19/80 (23%)
Query: 55 VVYMVLLIYFFLGVSIISDR-FMSAIEVITSQEREVSVTNKAGTRHKVTVRVWNETVANL 113
V+++ ++Y F+ ++I+ D F+ A+ VIT K+ + +E VA
Sbjct: 458 VLHIFGMMYVFVALAIVCDEYFVPALGVITD---------------KLQI---SEDVAGA 499
Query: 114 TLMALGSSAPEILLSVIEIW 133
T MA G SAPE+ S+I ++
Sbjct: 500 TFMAAGGSAPELFTSLIGVF 519
Score = 28.4 bits (63), Expect = 7.4
Identities = 17/51 (33%), Positives = 32/51 (62%), Gaps = 3/51 (5%)
Query: 164 NETVANLTLMALGSSAPEILLSVIEIWGKGFSAGELGPGTIVGSAAYNLFV 214
+E + LT++A G+S P+++ SVI + KG G++ + VGS +++ V
Sbjct: 966 SEEIMGLTILAAGTSIPDLITSVI-VARKGL--GDMAVSSSVGSNIFDITV 1013
>gnl|CDD|215604 PLN03151, PLN03151, cation/calcium exchanger; Provisional.
Length = 650
Score = 39.4 bits (92), Expect = 0.002
Identities = 37/104 (35%), Positives = 55/104 (52%), Gaps = 13/104 (12%)
Query: 166 TVANLTLMALGSSAPEILLSVIEIWGKGFSAGELGPGTIVGSAAYNLFV---IIALCVAV 222
TVA +TL+ LG+ AP++ S+ GK AGE+G +++G A + V I++LCVA
Sbjct: 178 TVAGVTLLPLGNGAPDVFASIAAFVGKD--AGEVGLNSVLGGAVFVTCVVVGIVSLCVA- 234
Query: 223 IPNGEVRKIKHLRVFFVTATWSVFAYIWLYAILAVFSPGIVEVW 266
+ EV+ K R F + +F + L IL V G V V
Sbjct: 235 --DKEVQIDK--RCFIRDLCFFLFTLVSLLVILMV---GKVTVG 271
Score = 31.7 bits (72), Expect = 0.57
Identities = 17/38 (44%), Positives = 25/38 (65%), Gaps = 2/38 (5%)
Query: 109 TVANLTLMALGSSAPEILLSVIEIWGKGFSAGELGPNA 146
TVA +TL+ LG+ AP++ S+ GK AGE+G N+
Sbjct: 178 TVAGVTLLPLGNGAPDVFASIAAFVGKD--AGEVGLNS 213
>gnl|CDD|223604 COG0530, ECM27, Ca2+/Na+ antiporter [Inorganic ion transport and
metabolism].
Length = 320
Score = 37.6 bits (88), Expect = 0.007
Identities = 24/111 (21%), Positives = 50/111 (45%), Gaps = 11/111 (9%)
Query: 165 ETVANLTLMALGSSAPEILLSVIEIWGKGFSAGELGPGTIVGSAAYNLFVIIALCVAVIP 224
E + LT++A G+S PE+ +S++ ++ G ++GS +N+ +I+ L A+I
Sbjct: 44 ELIIGLTIVAFGTSLPELAVSLVAAL---SGNPDIAVGNVLGSNIFNILLILGL-AALI- 98
Query: 225 NGEVRKIKHLRVFFVTATWSVFAYIWLYAILAVFSPGIVEVWEGLLTFLFF 275
V + + A + L +L G + +G++ L +
Sbjct: 99 ---APLKVDSDVLRREIPFLLLATLILLLVLLD---GHLSRLDGIVLLLLY 143
Score = 34.9 bits (81), Expect = 0.050
Identities = 23/117 (19%), Positives = 50/117 (42%), Gaps = 9/117 (7%)
Query: 164 NETVANLTLMALGSSAPEILLSVIEIWGKGFSAGELGPGTIVGSAAYNLFVIIALCVAVI 223
+E + LT++A+G+S PE+++S++ KG ++ G ++GS +N+ +++ + +
Sbjct: 208 SELIIGLTIVAIGTSLPELVVSIVAAR-KGE--DDIAVGNVIGSNIFNILIVLGISALIG 264
Query: 224 PNGEVRKIKHLRVFFVTATWSVFAYIWLYAILAVFSPGIVEVWEGLLTFLFFPATVL 280
P I + + L + + EGLL + V
Sbjct: 265 P------ITVEPSALLVDAPVLILVTLLLLLFLARRRRRIGRKEGLLLLGLYIVYVA 315
>gnl|CDD|232943 TIGR00367, TIGR00367, K+-dependent Na+/Ca+ exchanger
related-protein. This model models a family of
bacterial and archaeal proteins that is homologous,
except for lacking a central region of ~ 250 amino acids
and an N-terminal region of > 100 residues, to a
functionally proven potassium-dependent sodium-calcium
exchanger of the rat [Unknown function, General].
Length = 307
Score = 36.1 bits (84), Expect = 0.019
Identities = 16/58 (27%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
Query: 167 VANLTLMALGSSAPEILLSVIEIWGKGFSAGELGPGTIVGSAAYNLFVIIALCVAVIP 224
+ +T++A+G+S PE+ S+I ++G G ++GS +N+ +I+ L P
Sbjct: 38 IIGVTVVAIGTSLPELFTSLIASL---MGQPDIGVGNVIGSNIFNILLILGLSAIFSP 92
Score = 31.5 bits (72), Expect = 0.54
Identities = 16/54 (29%), Positives = 32/54 (59%), Gaps = 3/54 (5%)
Query: 165 ETVANLTLMALGSSAPEILLSVIEIWGKGFSAGELGPGTIVGSAAYNLFVIIAL 218
E + LTL+A+G+S PE+++S+ G++ G ++GS +N+ V + +
Sbjct: 204 EKIIGLTLLAIGTSLPELVVSLAAARKG---LGDIAVGNVIGSNIFNILVGLGV 254
>gnl|CDD|226910 COG4535, CorC, Putative Mg2+ and Co2+ transporter CorC [Inorganic
ion transport and metabolism].
Length = 293
Score = 30.8 bits (70), Expect = 0.85
Identities = 21/65 (32%), Positives = 27/65 (41%), Gaps = 23/65 (35%)
Query: 295 KKFRLNKNRV-IVAAE-----------------SGDIEMEKDVEEEILEENESLRPSSRH 336
K+FR +N + IV E GDIE E D EE+ +R SRH
Sbjct: 156 KEFRSQRNHMAIVIDEFGGVSGLVTIEDILEQIVGDIEDEYDEEED-----ADIRQLSRH 210
Query: 337 TLLIR 341
T +R
Sbjct: 211 TWRVR 215
>gnl|CDD|225205 COG2323, COG2323, Predicted membrane protein [Function unknown].
Length = 224
Score = 30.7 bits (70), Expect = 0.92
Identities = 34/158 (21%), Positives = 51/158 (32%), Gaps = 39/158 (24%)
Query: 182 ILLSVIEIWGKGFSAGELGP---------GTIVGSAAYNLFVIIALCVAVIPNGEVRKIK 232
ILL ++ I GK S ++ G+I G A ++ +
Sbjct: 17 ILLLLLRIMGKR-SISQMTIFDFVVMITLGSIAGDAIFD-----------------DDVS 58
Query: 233 HLRVFFVTATWSVFAYIWLYAILAVFSPGIVEVWEGLLTFLFFPATVLTAYFADKKLASH 292
L T ++ + Y L L L TVL + K+
Sbjct: 59 ILPTIIAILTLALLQILLSYLSLK---------SRKLRKLLEGKPTVL---IENGKIDEE 106
Query: 293 EFKKFRLNKNRVIVAAESGDIEMEKDVEEEILEENESL 330
KK RL + +++ I DVE ILE N L
Sbjct: 107 NLKKSRLTIDDLLMKLRQKGIFDLADVEFAILETNGQL 144
>gnl|CDD|198014 smart00946, ProRS-C_1, Prolyl-tRNA synthetase, C-terminal. Members
of this family are predominantly found in prokaryotic
prolyl-tRNA synthetase. They contain a zinc binding
site, and adopt a structure consisting of alpha helices
and antiparallel beta sheets arranged in 2 layers, in a
beta-alpha-beta-alpha-beta motif.
Length = 67
Score = 28.3 bits (64), Expect = 1.1
Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 293 EFKKFRLNKNRVIVAAESGDIEMEKDVEEEI 323
EFKK L + + ++A GD E E+ ++EE
Sbjct: 3 EFKKA-LEEGKFVLAPWCGDEECEEKIKEET 32
>gnl|CDD|238084 cd00146, PKD, polycystic kidney disease I (PKD) domain; similar to
other cell-surface modules, with an IG-like fold; domain
probably functions as a ligand binding site in
protein-protein or protein-carbohydrate interactions; a
single instance of the repeat is presented here. The
domain is also found in microbial collagenases and
chitinases.
Length = 81
Score = 28.2 bits (63), Expect = 1.8
Identities = 11/35 (31%), Positives = 17/35 (48%)
Query: 80 EVITSQEREVSVTNKAGTRHKVTVRVWNETVANLT 114
EV +S E V+ T + VT+ V N ++ T
Sbjct: 40 EVSSSGEPTVTHTYTKPGTYTVTLTVTNAVGSSST 74
Score = 27.1 bits (60), Expect = 4.4
Identities = 17/64 (26%), Positives = 27/64 (42%), Gaps = 1/64 (1%)
Query: 108 ETVANLTLMALGSSAPEILLSVIEIWGKGFSAGELGPNASVTNKAGTRHKVTVRVWNETV 167
E A++T A SS I+ S +G G + P + T + VT+ V N
Sbjct: 12 ELGASVTFSASDSSGGSIV-SYKWDFGDGEVSSSGEPTVTHTYTKPGTYTVTLTVTNAVG 70
Query: 168 ANLT 171
++ T
Sbjct: 71 SSST 74
>gnl|CDD|220134 pfam09180, ProRS-C_1, Prolyl-tRNA synthetase, C-terminal. Members
of this family are predominantly found in prokaryotic
prolyl-tRNA synthetase. They contain a zinc binding
site, and adopt a structure consisting of alpha helices
and antiparallel beta sheets arranged in 2 layers, in a
beta-alpha-beta-alpha-beta motif.
Length = 68
Score = 27.5 bits (62), Expect = 1.8
Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 293 EFKKFRLNKNRVIVAAESGDIEMEKDVEEEI 323
EFKK LNK ++A G E E+ ++EE
Sbjct: 3 EFKKA-LNKGGFVLAPWCGTEECEEKIKEET 32
>gnl|CDD|130492 TIGR01425, SRP54_euk, signal recognition particle protein SRP54.
This model represents examples from the eukaryotic
cytosol of the signal recognition particle protein
component, SRP54. This GTP-binding protein is a
component of the eukaryotic signal recognition particle,
along with several other protein subunits and a 7S RNA.
Some species, including Arabidopsis, have several
closely related forms. The extreme C-terminal region is
glycine-rich and lower in complexity, poorly conserved
between species, and excluded from this model.
Length = 429
Score = 30.2 bits (68), Expect = 1.9
Identities = 14/47 (29%), Positives = 27/47 (57%)
Query: 288 KLASHEFKKFRLNKNRVIVAAESGDIEMEKDVEEEILEENESLRPSS 334
K+AS +KF+ +I+ SG + E + EE+L+ E+++P +
Sbjct: 169 KIASEGVEKFKKENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDN 215
>gnl|CDD|200439 cd11283, ADF_GMF-beta_like, ADF-homology domain of glia maturation
factor beta and related proteins. Actin
depolymerization factor/cofilin-like domains (ADF
domains) are present in a family of essential eukaryotic
actin regulatory proteins. Most of these proteins
enhance the turnover rate of actin and interact with
actin monomers as well as actin filaments. The glia
maturation factor (GMF), however, does not bind actin
but interacts with the Arp2/3 complex (which contains
actin-related proteins, amongst others) and suppresses
Arp2/3 activity, inducing the dissociation of branched
daughter filaments from their mother filaments. This
family includes both mammalian GMF isoforms, GMF-beta
and GMF-gamma. GMF-beta regulates cellular growth,
fission, differentiation and apoptosis. GMF-gamma is
important in myeloid cell development and is an
important regulator for cell migration and polarity in
neutrophils.
Length = 122
Score = 28.7 bits (65), Expect = 2.0
Identities = 11/40 (27%), Positives = 21/40 (52%), Gaps = 6/40 (15%)
Query: 293 EFKKFRLNKNRVIVA------AESGDIEMEKDVEEEILEE 326
KKFR K++ A E +I +++++E+ +EE
Sbjct: 9 ALKKFRFRKSKANAALILKIDKEKQEIVVDEELEDISIEE 48
>gnl|CDD|226568 COG4083, COG4083, Predicted membrane protein [Function unknown].
Length = 239
Score = 29.0 bits (65), Expect = 3.3
Identities = 13/41 (31%), Positives = 18/41 (43%), Gaps = 2/41 (4%)
Query: 243 WSVFAYIWLYAILAVFSPGIVEVWEGLLTFLFFPATVLTAY 283
W+VF+ W I + + G L FL P + TAY
Sbjct: 22 WAVFSLFWGLLIEHYLF--VQDYINGALAFLAVPFCLYTAY 60
>gnl|CDD|216128 pfam00801, PKD, PKD domain. This domain was first identified in
the Polycystic kidney disease protein PKD1. This domain
has been predicted to contain an Ig-like fold.
Length = 70
Score = 27.0 bits (60), Expect = 3.9
Identities = 10/29 (34%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
Query: 81 VITSQEREVSVT-NKAGTRHKVTVRVWNE 108
+TS V+ T +K GT + VT+ N
Sbjct: 37 GLTSTGPNVTHTYSKPGT-YTVTLTATNG 64
Score = 26.6 bits (59), Expect = 5.2
Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
Query: 133 WGKGFSAGELGPNASVT-NKAGTRHKVTVRVWNE 165
+G G GPN + T +K GT + VT+ N
Sbjct: 32 FGDGPGLTSTGPNVTHTYSKPGT-YTVTLTATNG 64
>gnl|CDD|184934 PRK14970, PRK14970, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 367
Score = 29.1 bits (65), Expect = 3.9
Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 5/58 (8%)
Query: 86 EREVSVTNKAGTRHKVTVRVWN----ETVANLTLMALGSSAPEILLSVIEIWGKGFSA 139
+R V+ K TR VT N +T N+T + L + PE+LL+ EI KGF
Sbjct: 211 DRVVTFCGKNITRQAVT-ENLNILDYDTYINVTDLILENKIPELLLAFNEILRKGFDG 267
>gnl|CDD|233130 TIGR00797, matE, putative efflux protein, MATE family. The Multi
Antimicrobial Extrusion (MATE) Family (TC 2.A.66) The
MATE family consists of probable efflux proteins
including a functionally characterized multi drug efflux
system from Vibrio parahaemolyticus, a putative
ethionine resistance protein of Saccharomyces
cerevisiae, and the functionally uncharacterized DNA
damage-inducible protein F (DinF) of E. coli. These
proteins have 12 probable TMS [Transport and binding
proteins, Other].
Length = 342
Score = 28.7 bits (65), Expect = 4.0
Identities = 25/111 (22%), Positives = 46/111 (41%), Gaps = 12/111 (10%)
Query: 182 ILLSVIEIWGKGFSAGELGPGTIVGSAAYNLFVIIALCVAVIPNGEVRKIKHLRVFFVTA 241
I+L+ I I+GK G LG IVG+A + + + ++ ++K K + + +
Sbjct: 156 IILNYILIFGK---FGFLG---IVGAALATVISYWLMFLLLL--YYIKKAKKIGLKWEGL 207
Query: 242 TWSVFAYIWLYAILAVFSPGIVEVWEGLLTFLFFPATVLTAYFADKKLASH 292
+ + +L + P V L + F +L A LA+H
Sbjct: 208 LKPDWEVLK--RLLKLGLPIAFRV--ILESLSFALLALLVARLGSIALAAH 254
>gnl|CDD|153280 cd07596, BAR_SNX, The Bin/Amphiphysin/Rvs (BAR) domain of Sorting
Nexins. BAR domains are dimerization, lipid binding and
curvature sensing modules found in many different
proteins with diverse functions. Sorting nexins (SNXs)
are Phox homology (PX) domain containing proteins that
are involved in regulating membrane traffic and protein
sorting in the endosomal system. SNXs differ from each
other in their lipid-binding specificity, subcellular
localization and specific function in the endocytic
pathway. A subset of SNXs also contain BAR domains. The
PX-BAR structural unit determines the specific membrane
targeting of SNXs. BAR domains form dimers that bind to
membranes, induce membrane bending and curvature, and
may also be involved in protein-protein interactions.
Length = 218
Score = 27.7 bits (62), Expect = 7.5
Identities = 13/46 (28%), Positives = 20/46 (43%)
Query: 287 KKLASHEFKKFRLNKNRVIVAAESGDIEMEKDVEEEILEENESLRP 332
+ E K+F + R + AA ++ E+I E ESL P
Sbjct: 172 SERLKEELKRFHEERARDLKAALKEFARLQVQYAEKIAEAWESLLP 217
>gnl|CDD|235724 PRK06178, PRK06178, acyl-CoA synthetase; Validated.
Length = 567
Score = 28.1 bits (63), Expect = 8.4
Identities = 18/63 (28%), Positives = 25/63 (39%), Gaps = 20/63 (31%)
Query: 11 LLVFAPGFNIALENSTQSQCQDGII-----------LSFWDAEGEMTTLDRVMRGVVYMV 59
L F P F IA EN G++ L+ WDA M ++R V V
Sbjct: 254 FLSFLPEFWIAGENF-------GLLFPLFSGATLVLLARWDAVAFMAAVER--YRVTRTV 304
Query: 60 LLI 62
+L+
Sbjct: 305 MLV 307
>gnl|CDD|235991 PRK07327, PRK07327, enoyl-CoA hydratase; Provisional.
Length = 268
Score = 27.7 bits (62), Expect = 9.0
Identities = 30/133 (22%), Positives = 50/133 (37%), Gaps = 20/133 (15%)
Query: 79 IEVITSQEREVSVTNKAGTRHKVTVRVWNETVANLTLMALGSSAPEILLSVIEIWGKGFS 138
+E++ + ++ + H+ +W + P++ + +I GK FS
Sbjct: 23 LEIVLNGPGALNAADARM--HRELADIWRDV----------DRDPDVRVVLIRGEGKAFS 70
Query: 139 AGELGPNASVTNKAGTRHKVTVRVWNETVANLTLMALGSSAPEILLSVIEIW--GKGFSA 196
AG G A V A +V RVW E +L + P ++S I G G A
Sbjct: 71 AG--GDLALVEEMADD-FEVRARVWRE-ARDLVYNVINCDKP--IVSAIHGPAVGAGLVA 124
Query: 197 GELGPGTIVGSAA 209
L +I A
Sbjct: 125 ALLADISIAAKDA 137
>gnl|CDD|200376 TIGR04125, exosort_PGF_TRM, archaeosortase A, PGF-CTERM-specific.
This family is an archaeal variant of the (normally
bacterial) putative protein-sorting integral membrane
protein exosortase, hence archaeosortase. In species a
member of this family, its PGF-CTERM cognate sequence
(TIGR04126) occurs at the C-termini of from two to over
fifty proteins per genome. Those target proteins may not
share homology to each other in regions N-terminal to
the PGF-CTERM region.
Length = 262
Score = 27.6 bits (62), Expect = 9.6
Identities = 15/71 (21%), Positives = 25/71 (35%), Gaps = 8/71 (11%)
Query: 213 FVIIALCVAVIPNGEVRKIKHLRVFFVTATWSVFAYIWLYAILAVFSPGIVEVWEGLLTF 272
V ++ + G R+ + W++F WL + F I E +L
Sbjct: 4 LVSALFFLSALLPGRHRR------YVGAGAWALFGLFWLLLVPHFFE--INSYVEPILAI 55
Query: 273 LFFPATVLTAY 283
L P + T Y
Sbjct: 56 LAVPFCLYTGY 66
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.322 0.136 0.399
Gapped
Lambda K H
0.267 0.0796 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 17,565,696
Number of extensions: 1754472
Number of successful extensions: 2025
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2006
Number of HSP's successfully gapped: 95
Length of query: 342
Length of database: 10,937,602
Length adjustment: 98
Effective length of query: 244
Effective length of database: 6,590,910
Effective search space: 1608182040
Effective search space used: 1608182040
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (26.4 bits)