RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11989
(342 letters)
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 46.4 bits (109), Expect = 9e-06
Identities = 55/368 (14%), Positives = 91/368 (24%), Gaps = 161/368 (43%)
Query: 1 MLQLGLIVALLLVFAPGFNIALENSTQSQCQDGIILSFWDAEGEMTTLDRVMRGVVYM-V 59
MLQ LL P + ++S I L + E L R+++ Y
Sbjct: 201 MLQ-----KLLYQIDPNWTSRSDHS------SNIKLRIHSIQAE---LRRLLKSKPYENC 246
Query: 60 LLI-----------YFFLGVSIISDRFMSAIEVITSQEREVSVTNKAGTRHKVTVRVWNE 108
LL+ F L I+ + T R VT+ + + +
Sbjct: 247 LLVLLNVQNAKAWNAFNLSCKIL---------LTT---RFKQVTDFLSAATTTHISL-DH 293
Query: 109 TVANLTLMALGSSAPEILLSVIEIWGKGFSAGELGPNASVTNKAGTRHKVTVRVWNETVA 168
LT +LL ++ +L TN
Sbjct: 294 HSMTLTP----DEVKSLLLKYLDC-----RPQDLPREVLTTN------------------ 326
Query: 169 NLTLMALGSSAPEILLSVIEIWGKGFSAGEL---GPGTIVGSAAYN---LFVIIALCVAV 222
P LS+I E G T N L II + V
Sbjct: 327 -----------P-RRLSII---------AESIRDGLATWDNWKHVNCDKLTTIIESSLNV 365
Query: 223 IPNGEVRKIKHLRVFFVTATWSVFAYIWLYAILAVFSPGIVEVWEGLLTFLFFPATVLTA 282
+ E RK ++ L+VF P + P +L+
Sbjct: 366 LEPAEYRK--------------------MFDRLSVFPPS-AHI----------PTILLSL 394
Query: 283 YFADKKLASHEFKKFRLNKNRVIVAAESGDIEMEKDVEEEILEE--NESL---RPSSR-- 335
+ D + K ++ + SL +P
Sbjct: 395 IWFD----------------------------VIKSDVMVVVNKLHKYSLVEKQPKESTI 426
Query: 336 --HTLLIR 341
++ +
Sbjct: 427 SIPSIYLE 434
>3v5u_A Uncharacterized membrane protein MJ0091; lipid cubic phase, cation
protein complex, sodium,calcium EX membrane protein;
HET: OLC MYS 1PE; 1.90A {Methanocaldococcus jannaschii}
PDB: 3v5s_A*
Length = 320
Score = 41.4 bits (98), Expect = 3e-04
Identities = 23/137 (16%), Positives = 47/137 (34%), Gaps = 13/137 (9%)
Query: 170 LTLMALGSSAPEILLSVIEIWGKGFSAGELGPGTIVGSAAYNLFVIIALCVAVIPNGEVR 229
T+MA+G+S PEIL S + A + G +GS N+ +++ L + P +
Sbjct: 43 ATVMAIGTSLPEILTSAYASYMH---APGISIGNAIGSCICNIGLVLGLSAIISPIIVDK 99
Query: 230 KIKHLRVFFVTATWSVFAYIWLYAILAVFSPGIVEVWEGLLTFLFFPATVLTAYFADKKL 289
++ + ++ AV +G++ + F +
Sbjct: 100 NLQKNILVYLLFV----------IFAAVIGIDGFSWIDGVVLLILFIIYLRWTVKNGSAE 149
Query: 290 ASHEFKKFRLNKNRVIV 306
K + +V
Sbjct: 150 IEENNDKNNPSVVFSLV 166
Score = 34.5 bits (80), Expect = 0.040
Identities = 14/60 (23%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Query: 165 ETVANLTLMALGSSAPEILLSVIEIWGKGFSAGELGPGTIVGSAAYNLFVIIALCVAVIP 224
+ V TL+A G+S PE+++S+ + G + G ++GS ++ +A+ +
Sbjct: 197 DKVIGFTLVAFGTSLPELMVSLAAAK-RN--LGGMVLGNVIGSNIADIGGALAVGSLFMH 253
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 37.3 bits (86), Expect = 0.007
Identities = 28/177 (15%), Positives = 51/177 (28%), Gaps = 66/177 (37%)
Query: 178 SAPEILLS-----VIEIWGKGFSAGELGP---GTIVGSAAYNLFVIIALCVAVIPNGEVR 229
S P I + V+ GF+ GEL G S ++ A+ +A
Sbjct: 237 SCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQG----LVTAVAIAE------- 285
Query: 230 KIKHLRVFFVTATWSVFAYIWLYAILAVFSPGIVEVWEGLLTF--LFFPATVLTAYFA-D 286
T +W F AI +F G + P ++L +
Sbjct: 286 ----------TDSWESFFVSVRKAITVLFFIG----VRCYEAYPNTSLPPSILEDSLENN 331
Query: 287 KKLASHEFKKFRLNKNRVIVAAESGDIEM-------EKDVEEEILEENESLRPSSRH 336
+ + S M ++ V++ + + N L P+ +
Sbjct: 332 EGVPSP----------------------MLSISNLTQEQVQDYVNKTNSHL-PAGKQ 365
Score = 31.6 bits (71), Expect = 0.42
Identities = 74/372 (19%), Positives = 123/372 (33%), Gaps = 126/372 (33%)
Query: 1 MLQLG--LIVALLLVFAPGFNIALENSTQSQCQDGIILSF-------WDAEGEMTTLDRV 51
++QL ++ A LL F PG + + G++ + W++
Sbjct: 243 VIQLAHYVVTAKLLGFTPG-ELRSYLKGATGHSQGLVTAVAIAETDSWES---------- 291
Query: 52 MRGVVYMVLLIYFFLGV-------------SIISD---------RFMSAIEVITSQ--ER 87
V + + FF+GV SI+ D M +I +T + +
Sbjct: 292 FFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQD 351
Query: 88 EVSVTNKAGTRHK-VTVRVWNETVANLTLMALGSSAPEILLSVIEIWGKGFSAGELGPNA 146
V+ TN K V + + N NL + S P+ L + + + A
Sbjct: 352 YVNKTNSHLPAGKQVEISLVN-GAKNLVV----SGPPQSLYGL-NLTLRKAKA------P 399
Query: 147 SVTNKAGTRH-----KVTVRVWNETVANLTLMA------LGSSAPEILLSVIEIWGKGFS 195
S +++ K + R L + + L ++ I +++ F+
Sbjct: 400 SGLDQSRIPFSERKLKFSNRF-------LPVASPFHSHLLVPASDLINKDLVKN-NVSFN 451
Query: 196 AGELG-P--GTIVGSAAYNLFVIIALCVAVIPNGEVRKIKHLRVFFVTATWSVFAYIWLY 252
A ++ P T GS +L V+ I V I L V + T T F
Sbjct: 452 AKDIQIPVYDTFDGS---DLRVLSGSISERI----VDCIIRLPVKWETTT--QFKATH-- 500
Query: 253 AILAVFSPGIVEVWEGLLTFLFFPATVLTAYFADKKLASHEFKKFRLNKN----RVIVAA 308
IL F PG GL VLT NK+ RVIVA
Sbjct: 501 -IL-DFGPGGA---SGL--------GVLTH----------------RNKDGTGVRVIVA- 530
Query: 309 ESGDIEMEKDVE 320
G +++ D +
Sbjct: 531 --GTLDINPDDD 540
Score = 27.7 bits (61), Expect = 7.2
Identities = 21/108 (19%), Positives = 30/108 (27%), Gaps = 42/108 (38%)
Query: 271 TFLFFPATVLTAYF------ADKKLASHE-----------FKKFRLNKNRVIVAAESGDI 313
T FF A+ L F + A+ + F + V E +
Sbjct: 24 TASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGY------VSSLVEPSKV 77
Query: 314 EMEKDV--------EEEILEENE------SLRPSSRHTL-----LIRN 342
V E LE N+ L + TL LI+N
Sbjct: 78 GQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKN 125
>2j3s_A Filamin-A; cytoskeleton, phosphorylation, structural protein; 2.5A
{Homo sapiens} SCOP: b.1.18.10 b.1.18.10 PDB: 2e9i_A
Length = 288
Score = 30.7 bits (68), Expect = 0.66
Identities = 11/82 (13%), Positives = 20/82 (24%)
Query: 88 EVSVTNKAGTRHKVTVRVWNETVANLTLMALGSSAPEILLSVIEIWGKGFSAGELGPNAS 147
+ H V+V+ + V E + G G E G A
Sbjct: 158 CIRFVPAEMGTHTVSVKYKGQHVPGSPFQFTVGPLGEGGAHKVRAGGPGLERAEAGVPAE 217
Query: 148 VTNKAGTRHKVTVRVWNETVAN 169
+ + + E +
Sbjct: 218 FSIWTREAGAGGLAIAVEGPSK 239
>3fru_A Neonatal FC receptor; complex (immunoglobulin-binding protein),
complex (immunoglo binding protein) complex; HET: NAG
FUL NDG BMA MAN GAL FUC; 2.20A {Rattus norvegicus} SCOP:
b.1.1.2 d.19.1.1 PDB: 1frt_A* 1i1a_A*
Length = 269
Score = 27.6 bits (62), Expect = 5.3
Identities = 12/88 (13%), Positives = 22/88 (25%), Gaps = 27/88 (30%)
Query: 88 EVSVTNKAGTRHKVTVRVWNETVANLTLMALGSSAPEILLSVIEIWGK-----GFSAGEL 142
+ + + G + A PE+ + + G
Sbjct: 183 SMRLKARPGNSGSSVLTCA----------AFSFYPPELKFR----FLRNGLASGSGNCST 228
Query: 143 GPN--------ASVTNKAGTRHKVTVRV 162
GPN + + K G H +V
Sbjct: 229 GPNGDGSFHAWSLLEVKRGDEHHYQCQV 256
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.136 0.399
Gapped
Lambda K H
0.267 0.0771 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,213,700
Number of extensions: 322341
Number of successful extensions: 790
Number of sequences better than 10.0: 1
Number of HSP's gapped: 788
Number of HSP's successfully gapped: 16
Length of query: 342
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 248
Effective length of database: 4,077,219
Effective search space: 1011150312
Effective search space used: 1011150312
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.0 bits)