RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy11989
         (342 letters)



>d1elva1 b.47.1.2 (A:410-668) Complement C1S protease, catalytic
          domain {Human (Homo sapiens) [TaxId: 9606]}
          Length = 259

 Score = 27.5 bits (59), Expect = 2.6
 Identities = 5/28 (17%), Positives = 14/28 (50%), Gaps = 5/28 (17%)

Query: 57 YMVLLIYFFLGVSIISDRFMSAIEVITS 84
          + V     + G ++I++ +     V+T+
Sbjct: 27 WQVFFDNPWAGGALINEYW-----VLTA 49


>d1nj1a2 d.68.5.1 (A:411-481) C-terminal domain of ProRS {Arhaeon
           (Methanothermobacter thermautotrophicus) [TaxId:
           145262]}
          Length = 71

 Score = 25.5 bits (56), Expect = 2.6
 Identities = 9/30 (30%), Positives = 13/30 (43%)

Query: 293 EFKKFRLNKNRVIVAAESGDIEMEKDVEEE 322
           E  +    K  +I     G+ E   DVEE+
Sbjct: 9   EASRIVDEKRGIISFMWCGEEECGMDVEEK 38


>d2prda_ b.40.5.1 (A:) Inorganic pyrophosphatase {Thermus
           thermophilus [TaxId: 274]}
          Length = 174

 Score = 25.2 bits (55), Expect = 10.0
 Identities = 10/22 (45%), Positives = 15/22 (68%)

Query: 111 ANLTLMALGSSAPEILLSVIEI 132
           ANL  + +G  APE++  VIE+
Sbjct: 1   ANLKSLPVGDKAPEVVHMVIEV 22



 Score = 25.2 bits (55), Expect = 10.0
 Identities = 10/22 (45%), Positives = 15/22 (68%)

Query: 168 ANLTLMALGSSAPEILLSVIEI 189
           ANL  + +G  APE++  VIE+
Sbjct: 1   ANLKSLPVGDKAPEVVHMVIEV 22


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.136    0.399 

Gapped
Lambda     K      H
   0.267   0.0605    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,232,893
Number of extensions: 57024
Number of successful extensions: 112
Number of sequences better than 10.0: 1
Number of HSP's gapped: 112
Number of HSP's successfully gapped: 8
Length of query: 342
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 256
Effective length of database: 1,226,816
Effective search space: 314064896
Effective search space used: 314064896
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.5 bits)