BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11993
(630 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3DMD|B Chain B, Structures And Conformations In Solution Of The Signal
Recognition Particle Receptor From The Archaeon
Pyrococcus Furiosus
pdb|3DMD|A Chain A, Structures And Conformations In Solution Of The Signal
Recognition Particle Receptor From The Archaeon
Pyrococcus Furiosus
pdb|3DMD|C Chain C, Structures And Conformations In Solution Of The Signal
Recognition Particle Receptor From The Archaeon
Pyrococcus Furiosus
pdb|3E70|C Chain C, Structures And Conformations In Solution Of The Signal
Recognition Particle Receptor From The Archaeon
Pyrococcus Furiosus
Length = 328
Score = 204 bits (520), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 111/293 (37%), Positives = 173/293 (59%), Gaps = 27/293 (9%)
Query: 325 NLTKSDMKPILEKMKDHLIAKNVAADIAVKLCDSVALKLEGKVLGTFESVANTVKSTLTD 384
+ + D+ L++++ L+ +VA ++ L + + KL GK + ++ + +
Sbjct: 46 EIKEKDVDKALDELEIDLLEADVALEVVDALREKIKQKLVGKKVRIGTDKGKIIEEAVKE 105
Query: 385 ALVQILSPKRRVDILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLI 444
A+ +IL RR+D++ E +K +P+V+ F G NG GK+T +AK+ WL + +V+I
Sbjct: 106 AVSEILETSRRIDLIE---EIRKAEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVI 162
Query: 445 AACDTFRAGAVEQLRTHVRHLCSLHPAAKHGGREMVQLFEKGYGKDPAEIAFRAISHARD 504
AA DTFRAGA+EQL H + + V++ + YG DPA +A+ AI HA+
Sbjct: 163 AASDTFRAGAIEQLEEHAKRIG-------------VKVIKHSYGADPAAVAYDAIQHAKA 209
Query: 505 MHIDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQLVKFNNAMA 564
IDVVLIDTAGR + N LM + K+ +V +P+L++FVG+AL GN V+Q +FN A+
Sbjct: 210 RGIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGNAIVEQARQFNEAVK 269
Query: 565 DHSLSDNPHLIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGTGQTYTDLK 617
IDGI+LTK D D + GAA+S++Y+ PI+FVG GQ Y DL+
Sbjct: 270 ----------IDGIILTKLDA-DARGGAALSISYVIDAPILFVGVGQGYDDLR 311
>pdb|3DM9|B Chain B, Structures And Conformations In Solution Of The Signal
Recognition Particle Receptor From The Archaeon
Pyrococcus Furiosus
Length = 328
Score = 201 bits (512), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 110/292 (37%), Positives = 171/292 (58%), Gaps = 27/292 (9%)
Query: 326 LTKSDMKPILEKMKDHLIAKNVAADIAVKLCDSVALKLEGKVLGTFESVANTVKSTLTDA 385
+ + D+ L++++ L+ +VA ++ L + + KL GK + ++ + +A
Sbjct: 47 IKEKDVDKALDELEIDLLEADVALEVVDALREKIKQKLVGKKVRIGTDKGKIIEEAVKEA 106
Query: 386 LVQILSPKRRVDILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIA 445
+ +IL RR+D++ E +K +P+V+ F G NG GK+T +AK+ WL + +V+IA
Sbjct: 107 VSEILETSRRIDLIE---EIRKAEKPYVIXFVGFNGSGKTTTIAKLANWLKNHGFSVVIA 163
Query: 446 ACDTFRAGAVEQLRTHVRHLCSLHPAAKHGGREMVQLFEKGYGKDPAEIAFRAISHARDM 505
A DTFRAGA+EQL H + + V++ + YG DPA +A+ AI HA+
Sbjct: 164 ASDTFRAGAIEQLEEHAKRIG-------------VKVIKHSYGADPAAVAYDAIQHAKAR 210
Query: 506 HIDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQLVKFNNAMAD 565
IDVVLIDTAGR + N L K+ +V +P+L++FVG+AL GN V+Q +FN A+
Sbjct: 211 GIDVVLIDTAGRSETNRNLXDEXKKIARVTKPNLVIFVGDALAGNAIVEQARQFNEAVK- 269
Query: 566 HSLSDNPHLIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGTGQTYTDLK 617
IDGI+LTK D D + GAA+S++Y+ PI+FVG GQ Y DL+
Sbjct: 270 ---------IDGIILTKLDA-DARGGAALSISYVIDAPILFVGVGQGYDDLR 311
>pdb|2FH5|A Chain A, The Structure Of The Mammalian Srp Receptor
pdb|2GO5|1 Chain 1, Structure Of Signal Recognition Particle Receptor (Sr) In
Complex With Signal Recognition Particle (Srp) And
Ribosome Nascent Chain Complex
Length = 185
Score = 178 bits (452), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 91/155 (58%), Positives = 114/155 (73%), Gaps = 6/155 (3%)
Query: 1 MLDFFTIFSKGGIVLWYFQSASQIFTPSLNALIKSVILQERGGNQVFEHNGLVLKHKLDN 60
M+DFFTIFSKGG+VLW FQ S T +NALI+SV+LQERGGN F H L LK+KLDN
Sbjct: 10 MVDFFTIFSKGGLVLWCFQGVSDSCTGPVNALIRSVLLQERGGNNSFTHEALTLKYKLDN 69
Query: 61 EFDLVFVVGFQKILQLSYVDKLLDDVHLEFRDKYKNELGSDMHLY----DYDFESTYNVL 116
+F+LVFVVGFQKIL L+YVDKL+DDVH FRDKY+ E+ L +DF++ + L
Sbjct: 70 QFELVFVVGFQKILTLTYVDKLIDDVHRLFRDKYRTEIQQQSALSLLNGTFDFQNDFLRL 129
Query: 117 LKEAEEWSKVQACIPKQMRTFEESSKSKKTIASMI 151
L+EAEE SK++A P M+ FE+S K+KK + SMI
Sbjct: 130 LREAEESSKIRA--PTTMKKFEDSEKAKKPVRSMI 162
>pdb|2IY3|A Chain A, Structure Of The E. Coli Signal Recognition Particle Bound
To A Translating Ribosome
Length = 432
Score = 116 bits (291), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 88/292 (30%), Positives = 141/292 (48%), Gaps = 33/292 (11%)
Query: 320 LVGSKNLTKSDMKPILEKMKDHLIAKNVAADIAVKLCDSVALKLEGKVLGTFESVANTVK 379
L G +T+ D+K L +++ L+ +V ++A + V + GK + + A +
Sbjct: 16 LRGRGRITEEDLKATLREIRRALMDADVNLEVARDFVERVREEALGKQVLESLTPAEVIL 75
Query: 380 STLTDALVQILSPKRRVDILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENN 439
+T+ +AL + L + R+ +L+D + G+ G GK+T AK+ +
Sbjct: 76 ATVYEALKEALGGEARLPVLKDR---------NLWFLVGLQGSGKTTTAAKLALYYKGKG 126
Query: 440 LNVLIAACDTFRAGAVEQLRTHVRHLCSLHPAAKHGGREMVQLFEKGYGKDPAEIAFRAI 499
L+ A DT R A EQLR G + V + E G+ P I R
Sbjct: 127 RRPLLVAADTQRPAAREQLRLL-------------GEKVGVPVLEVMDGESPESIRRRVE 173
Query: 500 SHARDMHIDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQLVKF 559
AR D++L+DTAGR+Q +EPLM LA+L +V PD +L V +A+ G EA+ F
Sbjct: 174 EKARLEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEALSVARAF 233
Query: 560 NNAMADHSLSDNPHLIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGTGQ 611
+ + + G+VLTK D D + GAA+S ++TG+PI F G +
Sbjct: 234 DEKVG----------VTGLVLTKLDG-DARGGAALSARHVTGKPIYFAGVSE 274
>pdb|3NG1|A Chain A, N And Gtpase Domains Of The Signal Sequence Recognition
Protein Ffh From Thermus Aquaticus
pdb|3NG1|B Chain B, N And Gtpase Domains Of The Signal Sequence Recognition
Protein Ffh From Thermus Aquaticus
pdb|1OKK|A Chain A, Homo-Heterodimeric Complex Of The Srp Gtpases
pdb|2CNW|A Chain A, Gdpalf4 Complex Of The Srp Gtpases Ffh And Ftsy
pdb|2CNW|B Chain B, Gdpalf4 Complex Of The Srp Gtpases Ffh And Ftsy
pdb|2CNW|C Chain C, Gdpalf4 Complex Of The Srp Gtpases Ffh And Ftsy
pdb|2J7P|A Chain A, Gmppnp-Stabilized Ng Domain Complex Of The Srp Gtpases Ffh
And Ftsy
pdb|2J7P|B Chain B, Gmppnp-Stabilized Ng Domain Complex Of The Srp Gtpases Ffh
And Ftsy
pdb|1NG1|A Chain A, N And Gtpase Domains Of The Signal Sequence Recognition
Protein Ffh From Thermus Aquaticus
pdb|2XKV|A Chain A, Atomic Model Of The Srp-Ftsy Early Conformation
Length = 294
Score = 115 bits (288), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 88/292 (30%), Positives = 141/292 (48%), Gaps = 33/292 (11%)
Query: 320 LVGSKNLTKSDMKPILEKMKDHLIAKNVAADIAVKLCDSVALKLEGKVLGTFESVANTVK 379
L G +T+ D+K L +++ L+ +V ++A + V + GK + + A +
Sbjct: 16 LRGRGRITEEDLKATLREIRRALMDADVNLEVARDFVERVREEALGKQVLESLTPAEVIL 75
Query: 380 STLTDALVQILSPKRRVDILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENN 439
+T+ +AL + L + R+ +L+D + G+ G GK+T AK+ +
Sbjct: 76 ATVYEALKEALGGEARLPVLKDR---------NLWFLVGLQGSGKTTTAAKLALYYKGKG 126
Query: 440 LNVLIAACDTFRAGAVEQLRTHVRHLCSLHPAAKHGGREMVQLFEKGYGKDPAEIAFRAI 499
L+ A DT R A EQLR G + V + E G+ P I R
Sbjct: 127 RRPLLVAADTQRPAAREQLRLL-------------GEKVGVPVLEVMDGESPESIRRRVE 173
Query: 500 SHARDMHIDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQLVKF 559
AR D++L+DTAGR+Q +EPLM LA+L +V PD +L V +A+ G EA+ F
Sbjct: 174 EKARLEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEALSVARAF 233
Query: 560 NNAMADHSLSDNPHLIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGTGQ 611
+ + + G+VLTK D D + GAA+S ++TG+PI F G +
Sbjct: 234 DEKVG----------VTGLVLTKLDG-DARGGAALSARHVTGKPIYFAGVSE 274
>pdb|1JPJ|A Chain A, Gmppnp Complex Of Srp Gtpase Ng Domain
pdb|1JPN|A Chain A, Gmppnp Complex Of Srp Gtpase Ng Domain
pdb|1JPN|B Chain B, Gmppnp Complex Of Srp Gtpase Ng Domain
pdb|1RY1|U Chain U, Structure Of The Signal Recognition Particle Interacting
With The Elongation-Arrested Ribosome
Length = 296
Score = 115 bits (288), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 88/292 (30%), Positives = 141/292 (48%), Gaps = 33/292 (11%)
Query: 320 LVGSKNLTKSDMKPILEKMKDHLIAKNVAADIAVKLCDSVALKLEGKVLGTFESVANTVK 379
L G +T+ D+K L +++ L+ +V ++A + V + GK + + A +
Sbjct: 16 LRGRGRITEEDLKATLREIRRALMDADVNLEVARDFVERVREEALGKQVLESLTPAEVIL 75
Query: 380 STLTDALVQILSPKRRVDILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENN 439
+T+ +AL + L + R+ +L+D + G+ G GK+T AK+ +
Sbjct: 76 ATVYEALKEALGGEARLPVLKDR---------NLWFLVGLQGSGKTTTAAKLALYYKGKG 126
Query: 440 LNVLIAACDTFRAGAVEQLRTHVRHLCSLHPAAKHGGREMVQLFEKGYGKDPAEIAFRAI 499
L+ A DT R A EQLR G + V + E G+ P I R
Sbjct: 127 RRPLLVAADTQRPAAREQLRLL-------------GEKVGVPVLEVMDGESPESIRRRVE 173
Query: 500 SHARDMHIDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQLVKF 559
AR D++L+DTAGR+Q +EPLM LA+L +V PD +L V +A+ G EA+ F
Sbjct: 174 EKARLEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEALSVARAF 233
Query: 560 NNAMADHSLSDNPHLIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGTGQ 611
+ + + G+VLTK D D + GAA+S ++TG+PI F G +
Sbjct: 234 DEKVG----------VTGLVLTKLDG-DARGGAALSARHVTGKPIYFAGVSE 274
>pdb|1LS1|A Chain A, T. Aquaticus Ffh Ng Domain At 1.1a Resolution
Length = 295
Score = 115 bits (287), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 88/292 (30%), Positives = 141/292 (48%), Gaps = 33/292 (11%)
Query: 320 LVGSKNLTKSDMKPILEKMKDHLIAKNVAADIAVKLCDSVALKLEGKVLGTFESVANTVK 379
L G +T+ D+K L +++ L+ +V ++A + V + GK + + A +
Sbjct: 16 LRGRGRITEEDLKATLREIRRALMDADVNLEVARDFVERVREEALGKQVLESLTPAEVIL 75
Query: 380 STLTDALVQILSPKRRVDILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENN 439
+T+ +AL + L + R+ +L+D + G+ G GK+T AK+ +
Sbjct: 76 ATVYEALKEALGGEARLPVLKDR---------NLWFLVGLQGSGKTTTAAKLALYYKGKG 126
Query: 440 LNVLIAACDTFRAGAVEQLRTHVRHLCSLHPAAKHGGREMVQLFEKGYGKDPAEIAFRAI 499
L+ A DT R A EQLR G + V + E G+ P I R
Sbjct: 127 RRPLLVAADTQRPAAREQLRLL-------------GEKVGVPVLEVMDGESPESIRRRVE 173
Query: 500 SHARDMHIDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQLVKF 559
AR D++L+DTAGR+Q +EPLM LA+L +V PD +L V +A+ G EA+ F
Sbjct: 174 EKARLEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEALSVARAF 233
Query: 560 NNAMADHSLSDNPHLIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGTGQ 611
+ + + G+VLTK D D + GAA+S ++TG+PI F G +
Sbjct: 234 DEKVG----------VTGLVLTKLDG-DARGGAALSARHVTGKPIYFAGVSE 274
>pdb|1O87|A Chain A, A New Mggdp Complex Of The Ffh Ng Domain
pdb|1O87|B Chain B, A New Mggdp Complex Of The Ffh Ng Domain
pdb|2C04|A Chain A, Gmppcp Complex Of Srp Gtpase Ffh Ng Domain At Ultra-High
Resolution
pdb|2C04|B Chain B, Gmppcp Complex Of Srp Gtpase Ffh Ng Domain At Ultra-High
Resolution
pdb|2J45|A Chain A, Water Structure Of T. Aquaticus Ffh Ng Domain At 1.1a
Resolution
pdb|2J45|B Chain B, Water Structure Of T. Aquaticus Ffh Ng Domain At 1.1a
Resolution
pdb|2J46|A Chain A, Water Structure Of T. Aquaticus Ffh Ng Domain At 1.1a
Resolution
pdb|2J46|B Chain B, Water Structure Of T. Aquaticus Ffh Ng Domain At 1.1a
Resolution
Length = 297
Score = 115 bits (287), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 88/292 (30%), Positives = 141/292 (48%), Gaps = 33/292 (11%)
Query: 320 LVGSKNLTKSDMKPILEKMKDHLIAKNVAADIAVKLCDSVALKLEGKVLGTFESVANTVK 379
L G +T+ D+K L +++ L+ +V ++A + V + GK + + A +
Sbjct: 16 LRGRGRITEEDLKATLREIRRALMDADVNLEVARDFVERVREEALGKQVLESLTPAEVIL 75
Query: 380 STLTDALVQILSPKRRVDILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENN 439
+T+ +AL + L + R+ +L+D + G+ G GK+T AK+ +
Sbjct: 76 ATVYEALKEALGGEARLPVLKDR---------NLWFLVGLQGSGKTTTAAKLALYYKGKG 126
Query: 440 LNVLIAACDTFRAGAVEQLRTHVRHLCSLHPAAKHGGREMVQLFEKGYGKDPAEIAFRAI 499
L+ A DT R A EQLR G + V + E G+ P I R
Sbjct: 127 RRPLLVAADTQRPAAREQLRLL-------------GEKVGVPVLEVMDGESPESIRRRVE 173
Query: 500 SHARDMHIDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQLVKF 559
AR D++L+DTAGR+Q +EPLM LA+L +V PD +L V +A+ G EA+ F
Sbjct: 174 EKARLEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEALSVARAF 233
Query: 560 NNAMADHSLSDNPHLIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGTGQ 611
+ + + G+VLTK D D + GAA+S ++TG+PI F G +
Sbjct: 234 DEKVG----------VTGLVLTKLDG-DARGGAALSARHVTGKPIYFAGVSE 274
>pdb|2FFH|A Chain A, The Signal Sequence Binding Protein Ffh From Thermus
Aquaticus
pdb|2FFH|B Chain B, The Signal Sequence Binding Protein Ffh From Thermus
Aquaticus
pdb|2FFH|C Chain C, The Signal Sequence Binding Protein Ffh From Thermus
Aquaticus
Length = 425
Score = 114 bits (285), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 88/298 (29%), Positives = 142/298 (47%), Gaps = 33/298 (11%)
Query: 320 LVGSKNLTKSDMKPILEKMKDHLIAKNVAADIAVKLCDSVALKLEGKVLGTFESVANTVK 379
L G +T+ D+K L +++ L+ +V ++ + V + GK + + A +
Sbjct: 16 LRGRGRITEEDLKATLREIRRALMDADVNLEVTRDFVERVREEALGKQVLESLTPAEVIL 75
Query: 380 STLTDALVQILSPKRRVDILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENN 439
+T+ +AL + L + R+ +L+D + G+ G GK+T AK+ +
Sbjct: 76 ATVYEALKEALGGEARLPVLKDR---------NLWFLVGLQGSGKTTTAAKLALYYKGKG 126
Query: 440 LNVLIAACDTFRAGAVEQLRTHVRHLCSLHPAAKHGGREMVQLFEKGYGKDPAEIAFRAI 499
L+ A DT R A EQLR G + V + E G+ P I R
Sbjct: 127 RRPLLVAADTQRPAAREQLRLL-------------GEKVGVPVLEVMDGESPESIRRRVE 173
Query: 500 SHARDMHIDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQLVKF 559
AR D++L+DTAGR+Q +EPLM LA+L +V PD +L V +A+ G EA+ F
Sbjct: 174 EKARLEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEALSVARAF 233
Query: 560 NNAMADHSLSDNPHLIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGTGQTYTDLK 617
+ + + G+VLTK D D + GAA+S ++TG+PI F G + L+
Sbjct: 234 DEKVG----------VTGLVLTKLDG-DARGGAALSARHVTGKPIYFAGVSEKPEGLE 280
>pdb|2NG1|A Chain A, N And Gtpase Domains Of The Signal Sequence Recognition
Protein Ffh From Thermus Aquaticus
Length = 293
Score = 114 bits (284), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 87/292 (29%), Positives = 140/292 (47%), Gaps = 33/292 (11%)
Query: 320 LVGSKNLTKSDMKPILEKMKDHLIAKNVAADIAVKLCDSVALKLEGKVLGTFESVANTVK 379
L G +T+ D+K L +++ L+ +V ++ + V + GK + + A +
Sbjct: 15 LRGRGRITEEDLKATLREIRRALMDADVNLEVTRDFVERVREEALGKQVLESLTPAEVIL 74
Query: 380 STLTDALVQILSPKRRVDILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENN 439
+T+ +AL + L + R+ +L+D + G+ G GK+T AK+ +
Sbjct: 75 ATVYEALKEALGGEARLPVLKDR---------NLWFLVGLQGSGKTTTAAKLALYYKGKG 125
Query: 440 LNVLIAACDTFRAGAVEQLRTHVRHLCSLHPAAKHGGREMVQLFEKGYGKDPAEIAFRAI 499
L+ A DT R A EQLR G + V + E G+ P I R
Sbjct: 126 RRPLLVAADTQRPAAREQLRLL-------------GEKVGVPVLEVMDGESPESIRRRVE 172
Query: 500 SHARDMHIDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQLVKF 559
AR D++L+DTAGR+Q +EPLM LA+L +V PD +L V +A+ G EA+ F
Sbjct: 173 EKARLEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEALSVARAF 232
Query: 560 NNAMADHSLSDNPHLIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGTGQ 611
+ + + G+VLTK D D + GAA+S ++TG+PI F G +
Sbjct: 233 DEKVG----------VTGLVLTKLDG-DARGGAALSARHVTGKPIYFAGVSE 273
>pdb|1ZU4|A Chain A, Crystal Structure Of Ftsy From Mycoplasma Mycoides- Space
Group P21212
pdb|1ZU5|A Chain A, Crystal Structure Of Ftsy From Mycoplasma Mycoides- Space
Group H32
pdb|1ZU5|B Chain B, Crystal Structure Of Ftsy From Mycoplasma Mycoides- Space
Group H32
Length = 320
Score = 114 bits (284), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 94/306 (30%), Positives = 148/306 (48%), Gaps = 47/306 (15%)
Query: 323 SKNLTKSDMKPILEKMKDHLIAKNVAADIAVKLCDSVALKLEGKVLGTFESVANTVKSTL 382
SK ++D E+++D LI ++ + +K+ + V K + +FE++ + + +L
Sbjct: 26 SKKYKQAD-DEFFEELEDVLIQTDMGMKMVLKVSNLVRKKTKRDT--SFENIKDALVESL 82
Query: 383 TDALVQ--ILSPKRRVDILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNL 440
A + K R+D K+ R + GVNG GK+T+LAK+ + E
Sbjct: 83 YQAYTDNDWTNKKYRIDF--------KENRLNIFMLVGVNGTGKTTSLAKMANYYAELGY 134
Query: 441 NVLIAACDTFRAGAVEQL----RTHVRHLCSLHPAAKHGGREMVQLFEKGYGKDPAEIAF 496
VLIAA DTFRAGA +QL +T + + L A K DPA + F
Sbjct: 135 KVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANK-------------LNADPASVVF 181
Query: 497 RAISHARDMHIDVVLIDTAGRMQDNEPLMRALAKLVKVNQ------PDLLLFVGEALVGN 550
AI A++ + D++LIDTAGR+Q+ LM L K+ K+ Q P +L V +A G
Sbjct: 182 DAIKKAKEQNYDLLLIDTAGRLQNKTNLMAELEKMNKIIQQVEKSAPHEVLLVIDATTGQ 241
Query: 551 EAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGTG 610
V Q +F+ +AD + GI+LTK D+ K G +++ + PI +G G
Sbjct: 242 NGVIQAEEFSK-VAD---------VSGIILTKMDST-SKGGIGLAIKELLNIPIKMIGVG 290
Query: 611 QTYTDL 616
+ DL
Sbjct: 291 EKVDDL 296
>pdb|1FFH|A Chain A, N And Gtpase Domains Of The Signal Sequence Recognition
Protein Ffh From Thermus Aquaticus
Length = 294
Score = 113 bits (283), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 87/292 (29%), Positives = 140/292 (47%), Gaps = 33/292 (11%)
Query: 320 LVGSKNLTKSDMKPILEKMKDHLIAKNVAADIAVKLCDSVALKLEGKVLGTFESVANTVK 379
L G +T+ D+K L +++ L+ +V ++ + V + GK + + A +
Sbjct: 15 LRGRGRITEEDLKATLREIRRALMDADVNLEVTRDFVERVREEALGKQVLESLTPAEVIL 74
Query: 380 STLTDALVQILSPKRRVDILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENN 439
+T+ +AL + L + R+ +L+D + G+ G GK+T AK+ +
Sbjct: 75 ATVYEALKEALGGEARLPVLKDR---------NLWFLVGLQGSGKTTTAAKLALYYKGKG 125
Query: 440 LNVLIAACDTFRAGAVEQLRTHVRHLCSLHPAAKHGGREMVQLFEKGYGKDPAEIAFRAI 499
L+ A DT R A EQLR G + V + E G+ P I R
Sbjct: 126 RRPLLVAADTQRPAAREQLRLL-------------GEKVGVPVLEVMDGESPESIRRRVE 172
Query: 500 SHARDMHIDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQLVKF 559
AR D++L+DTAGR+Q +EPLM LA+L +V PD +L V +A+ G EA+ F
Sbjct: 173 EKARLEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEALSVARAF 232
Query: 560 NNAMADHSLSDNPHLIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGTGQ 611
+ + + G+VLTK D D + GAA+S ++TG+PI F G +
Sbjct: 233 DEKVG----------VTGLVLTKLDG-DARGGAALSARHVTGKPIYFAGVSE 273
>pdb|1RJ9|B Chain B, Structure Of The Heterodimer Of The Conserved Gtpase
Domains Signal Recognition Particle (Ffh) And Its
Receptor (Ftsy)
Length = 300
Score = 113 bits (283), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 87/292 (29%), Positives = 140/292 (47%), Gaps = 33/292 (11%)
Query: 320 LVGSKNLTKSDMKPILEKMKDHLIAKNVAADIAVKLCDSVALKLEGKVLGTFESVANTVK 379
L G +T+ D+K L +++ L+ +V ++ + V + GK + + A +
Sbjct: 16 LRGRGRITEEDLKATLREIRRALMDADVNLEVTRDFVERVREEALGKQVLESLTPAEVIL 75
Query: 380 STLTDALVQILSPKRRVDILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENN 439
+T+ +AL + L + R+ +L+D + G+ G GK+T AK+ +
Sbjct: 76 ATVYEALKEALGGEARLPVLKDR---------NLWFLVGLQGSGKTTTAAKLALYYKGKG 126
Query: 440 LNVLIAACDTFRAGAVEQLRTHVRHLCSLHPAAKHGGREMVQLFEKGYGKDPAEIAFRAI 499
L+ A DT R A EQLR G + V + E G+ P I R
Sbjct: 127 RRPLLVAADTQRPAAREQLRLL-------------GEKVGVPVLEVMDGESPESIRRRVE 173
Query: 500 SHARDMHIDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQLVKF 559
AR D++L+DTAGR+Q +EPLM LA+L +V PD +L V +A+ G EA+ F
Sbjct: 174 EKARLEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEALSVARAF 233
Query: 560 NNAMADHSLSDNPHLIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGTGQ 611
+ + + G+VLTK D D + GAA+S ++TG+PI F G +
Sbjct: 234 DEKVG----------VTGLVLTKLDG-DARGGAALSARHVTGKPIYFAGVSE 274
>pdb|2C03|A Chain A, Gdp Complex Of Srp Gtpase Ffh Ng Domain
pdb|2C03|B Chain B, Gdp Complex Of Srp Gtpase Ffh Ng Domain
Length = 297
Score = 113 bits (283), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 87/292 (29%), Positives = 140/292 (47%), Gaps = 33/292 (11%)
Query: 320 LVGSKNLTKSDMKPILEKMKDHLIAKNVAADIAVKLCDSVALKLEGKVLGTFESVANTVK 379
L G +T+ D+K L +++ L+ +V ++ + V + GK + + A +
Sbjct: 16 LRGRGRITEEDLKATLREIRRALMDADVNLEVTRDFVERVREEALGKQVLESLTPAEVIL 75
Query: 380 STLTDALVQILSPKRRVDILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENN 439
+T+ +AL + L + R+ +L+D + G+ G GK+T AK+ +
Sbjct: 76 ATVYEALKEALGGEARLPVLKDR---------NLWFLVGLQGSGKTTTAAKLALYYKGKG 126
Query: 440 LNVLIAACDTFRAGAVEQLRTHVRHLCSLHPAAKHGGREMVQLFEKGYGKDPAEIAFRAI 499
L+ A DT R A EQLR G + V + E G+ P I R
Sbjct: 127 RRPLLVAADTQRPAAREQLRLL-------------GEKVGVPVLEVMDGESPESIRRRVE 173
Query: 500 SHARDMHIDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQLVKF 559
AR D++L+DTAGR+Q +EPLM LA+L +V PD +L V +A+ G EA+ F
Sbjct: 174 EKARLEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEALSVARAF 233
Query: 560 NNAMADHSLSDNPHLIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGTGQ 611
+ + + G+VLTK D D + GAA+S ++TG+PI F G +
Sbjct: 234 DEKVG----------VTGLVLTKLDG-DARGGAALSARHVTGKPIYFAGVSE 274
>pdb|2YHS|A Chain A, Structure Of The E. Coli Srp Receptor Ftsy
Length = 503
Score = 112 bits (280), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 76/225 (33%), Positives = 109/225 (48%), Gaps = 30/225 (13%)
Query: 411 PFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHP 470
PFV+ GVNGVGK+T + K+ + +V++AA DTFRA AVEQL+
Sbjct: 293 PFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQV---------- 342
Query: 471 AAKHGGREMVQLFEKGYGKDPAEIAFRAISHARDMHIDVVLIDTAGRMQDNEPLMRALAK 530
G R + + + G D A + F AI A+ +IDV++ DTAGR+Q+ LM L K
Sbjct: 343 ---WGQRNNIPVIAQHTGADSASVIFDAIQAAKARNIDVLIADTAGRLQNKSHLMEELKK 399
Query: 531 LVK------VNQPDLLLFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFD 584
+V+ V P ++ +A G AV Q F+ A+ + GI LTK D
Sbjct: 400 IVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKLFHEAVG----------LTGITLTKLD 449
Query: 585 TIDDKVGAAISMTYITGQPIVFVGTGQTYTDLKSLNAKAVVNALM 629
K G S+ G PI ++G G+ DL+ A + AL
Sbjct: 450 GT-AKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDFIEALF 493
>pdb|2QY9|A Chain A, Structure Of The Ng+1 Construct Of The E. Coli Srp
Receptor Ftsy
Length = 309
Score = 110 bits (275), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 76/225 (33%), Positives = 109/225 (48%), Gaps = 30/225 (13%)
Query: 411 PFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHP 470
PFV+ GVNGVGK+T + K+ + +V++AA DTFRA AVEQL+
Sbjct: 99 PFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQV---------- 148
Query: 471 AAKHGGREMVQLFEKGYGKDPAEIAFRAISHARDMHIDVVLIDTAGRMQDNEPLMRALAK 530
G R + + + G D A + F AI A+ +IDV++ DTAGR+Q+ LM L K
Sbjct: 149 ---WGQRNNIPVIAQHTGADSASVIFDAIQAAKARNIDVLIADTAGRLQNKSHLMEELKK 205
Query: 531 LVK------VNQPDLLLFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFD 584
+V+ V P ++ +A G AV Q F+ A+ + GI LTK D
Sbjct: 206 IVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKLFHEAVG----------LTGITLTKLD 255
Query: 585 TIDDKVGAAISMTYITGQPIVFVGTGQTYTDLKSLNAKAVVNALM 629
K G S+ G PI ++G G+ DL+ A + AL
Sbjct: 256 GT-AKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDFIEALF 299
>pdb|2XXA|B Chain B, The Crystal Structure Of The Signal Recognition Particle
(Srp) In Complex With Its Receptor(Sr)
pdb|2XXA|D Chain D, The Crystal Structure Of The Signal Recognition Particle
(Srp) In Complex With Its Receptor(Sr)
Length = 302
Score = 110 bits (275), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 76/225 (33%), Positives = 109/225 (48%), Gaps = 30/225 (13%)
Query: 411 PFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHP 470
PFV+ GVNGVGK+T + K+ + +V++AA DTFRA AVEQL+
Sbjct: 98 PFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQV---------- 147
Query: 471 AAKHGGREMVQLFEKGYGKDPAEIAFRAISHARDMHIDVVLIDTAGRMQDNEPLMRALAK 530
G R + + + G D A + F AI A+ +IDV++ DTAGR+Q+ LM L K
Sbjct: 148 ---WGQRNNIPVIAQHTGADSASVIFDAIQAAKARNIDVLIADTAGRLQNKSHLMEELKK 204
Query: 531 LVK------VNQPDLLLFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFD 584
+V+ V P ++ +A G AV Q F+ A+ + GI LTK D
Sbjct: 205 IVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKLFHEAVG----------LTGITLTKLD 254
Query: 585 TIDDKVGAAISMTYITGQPIVFVGTGQTYTDLKSLNAKAVVNALM 629
K G S+ G PI ++G G+ DL+ A + AL
Sbjct: 255 GT-AKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDFIEALF 298
>pdb|1FTS|A Chain A, Signal Recognition Particle Receptor From E. Coli
Length = 295
Score = 110 bits (274), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 76/225 (33%), Positives = 109/225 (48%), Gaps = 30/225 (13%)
Query: 411 PFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHP 470
PFV+ GVNGVGK+T + K+ + +V++AA DTFRA AVEQL+
Sbjct: 93 PFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQV---------- 142
Query: 471 AAKHGGREMVQLFEKGYGKDPAEIAFRAISHARDMHIDVVLIDTAGRMQDNEPLMRALAK 530
G R + + + G D A + F AI A+ +IDV++ DTAGR+Q+ LM L K
Sbjct: 143 ---WGQRNNIPVIAQHTGADSASVIFDAIQAAKARNIDVLIADTAGRLQNKSHLMEELKK 199
Query: 531 LVK------VNQPDLLLFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFD 584
+V+ V P ++ +A G AV Q F+ A+ + GI LTK D
Sbjct: 200 IVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKLFHEAVG----------LTGITLTKLD 249
Query: 585 TIDDKVGAAISMTYITGQPIVFVGTGQTYTDLKSLNAKAVVNALM 629
K G S+ G PI ++G G+ DL+ A + AL
Sbjct: 250 GT-AKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDFIEALF 293
>pdb|2XXA|A Chain A, The Crystal Structure Of The Signal Recognition Particle
(Srp) In Complex With Its Receptor(Sr)
pdb|2XXA|C Chain C, The Crystal Structure Of The Signal Recognition Particle
(Srp) In Complex With Its Receptor(Sr)
Length = 433
Score = 100 bits (249), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 85/324 (26%), Positives = 149/324 (45%), Gaps = 52/324 (16%)
Query: 317 FRGLVGSKNLTKSDMKPILEKMKDHLIAKNVAADIAVKLCDSVALKLEGKVLGTFESVAN 376
R + G LT+ ++K L +++ L+ +VA + + + V K +V +
Sbjct: 13 LRNISGRGRLTEDNVKDTLREVRMALLEADVALPVVREFINRVKEK----------AVGH 62
Query: 377 TVKSTLTDALVQILSPKRRVDILRDALEAKKQGR----------PFVMAFCGVNGVGKST 426
V +LT + V I+R+ L A P V+ G+ G GK+T
Sbjct: 63 EVNKSLTPG-------QEFVKIVRNELVAAMGEENQTLNLAAQPPAVVLMAGLQGAGKTT 115
Query: 427 NLAKICFWLIENNLN-VLIAACDTFRAGAVEQLRTHVRHLCSLHPAAKHGGREMVQLFEK 485
++ K+ +L E + VL+ + D +R A++QL T + V F
Sbjct: 116 SVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVG-------------VDFFPS 162
Query: 486 GYGKDPAEIAFRAISHARDMHIDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGE 545
G+ P +I A+ A+ DV+L+DTAGR+ +E +M + ++ P LFV +
Sbjct: 163 DVGQKPVDIVNAALKEAKLKFYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVD 222
Query: 546 ALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTIDDKVGAAISMTYITGQPIV 605
A+ G +A + FN A+ + G+VLTK D D + GAA+S+ +ITG+PI
Sbjct: 223 AMTGQDAANTAKAFNEALP----------LTGVVLTKVDG-DARGGAALSIRHITGKPIK 271
Query: 606 FVGTGQTYTDLKSLNAKAVVNALM 629
F+G G+ L+ + + + ++
Sbjct: 272 FLGVGEKTEALEPFHPDRIASRIL 295
>pdb|2J28|9 Chain 9, Model Of E. Coli Srp Bound To 70s Rncs
Length = 430
Score = 100 bits (248), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 85/324 (26%), Positives = 149/324 (45%), Gaps = 52/324 (16%)
Query: 317 FRGLVGSKNLTKSDMKPILEKMKDHLIAKNVAADIAVKLCDSVALKLEGKVLGTFESVAN 376
R + G LT+ ++K L +++ L+ +VA + + + V K +V +
Sbjct: 12 LRNISGRGRLTEDNVKDTLREVRMALLEADVALPVVREFINRVKEK----------AVGH 61
Query: 377 TVKSTLTDALVQILSPKRRVDILRDALEAK----------KQGRPFVMAFCGVNGVGKST 426
V +LT + V I+R+ L A P V+ G+ G GK+T
Sbjct: 62 EVNKSLTPG-------QEFVKIVRNELVAAMGEENQTLNLAAQPPAVVLMAGLQGAGKTT 114
Query: 427 NLAKICFWLIENNLN-VLIAACDTFRAGAVEQLRTHVRHLCSLHPAAKHGGREMVQLFEK 485
++ K+ +L E + VL+ + D +R A++QL T + V F
Sbjct: 115 SVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVG-------------VDFFPS 161
Query: 486 GYGKDPAEIAFRAISHARDMHIDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGE 545
G+ P +I A+ A+ DV+L+DTAGR+ +E +M + ++ P LFV +
Sbjct: 162 DVGQKPVDIVNAALKEAKLKFYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVD 221
Query: 546 ALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTIDDKVGAAISMTYITGQPIV 605
A+ G +A + FN A+ + G+VLTK D D + GAA+S+ +ITG+PI
Sbjct: 222 AMTGQDAANTAKAFNEALP----------LTGVVLTKVDG-DARGGAALSIRHITGKPIK 270
Query: 606 FVGTGQTYTDLKSLNAKAVVNALM 629
F+G G+ L+ + + + ++
Sbjct: 271 FLGVGEKTEALEPFHPDRIASRIL 294
>pdb|3B9Q|A Chain A, The Crystal Structure Of Cpftsy From Arabidopsis Thaliana
Length = 302
Score = 99.4 bits (246), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 86/311 (27%), Positives = 150/311 (48%), Gaps = 42/311 (13%)
Query: 325 NLTKSDMKPILEKMKDHLIAKNVAADIAVKLCDSVALKLEGKVLGTFESVANTVKSTLTD 384
NL ++D +L+++++ L+ + I V++ + + E + G +S + +K L +
Sbjct: 25 NLAETDR--VLDELEEALLVSDFGPKITVRIVERLR---EDIMSGKLKS-GSEIKDALKE 78
Query: 385 ALVQILSPKRRVDILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLI 444
+++++L+ K L+ +P V+ GVNG GK+T+L K+ L VL+
Sbjct: 79 SVLEMLAKKNSKTELQLGFR-----KPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLM 133
Query: 445 AACDTFRAGAVEQLRTHVRHLCSLHPAAKHGGREMVQLFEKGYGKDPAEIAFRAISHARD 504
AA DTFRA A +QL A+ G E+V +G A + +A+ ++
Sbjct: 134 AAGDTFRAAASDQLEIW----------AERTGCEIV--VAEGDKAKAATVLSKAVKRGKE 181
Query: 505 MHIDVVLIDTAGRMQDNEPLM-------RALAKLVKVNQPDLLLFVGEALVGNEAVDQLV 557
DVVL DT+GR+ N LM +A+ K+V P+ +L V + G + Q
Sbjct: 182 EGYDVVLCDTSGRLHTNYSLMEELIACKKAVGKIVS-GAPNEILLVLDGNTGLNMLPQAR 240
Query: 558 KFNNAMADHSLSDNPHLIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGTGQTYTDLK 617
+FN + I G++LTK D + G +S+ G P+ F+G G+ DL+
Sbjct: 241 EFNEVVG----------ITGLILTKLDG-SARGGCVVSVVEELGIPVKFIGVGEAVEDLQ 289
Query: 618 SLNAKAVVNAL 628
+ +A VNA+
Sbjct: 290 PFDPEAFVNAI 300
>pdb|2OG2|A Chain A, Crystal Structure Of Chloroplast Ftsy From Arabidopsis
Thaliana
Length = 359
Score = 99.4 bits (246), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 84/311 (27%), Positives = 148/311 (47%), Gaps = 42/311 (13%)
Query: 325 NLTKSDMKPILEKMKDHLIAKNVAADIAVKLCDSVALKLEGKVLGTFESVANTVKSTLTD 384
NL ++D +L+++++ L+ + I V++ + +L ++ + +K L +
Sbjct: 82 NLAETDR--VLDELEEALLVSDFGPKITVRIVE----RLREDIMSGKLKSGSEIKDALKE 135
Query: 385 ALVQILSPKRRVDILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLI 444
+++++L+ K L+ +P V+ GVNG GK+T+L K+ L VL+
Sbjct: 136 SVLEMLAKKNSKTELQLGFR-----KPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLM 190
Query: 445 AACDTFRAGAVEQLRTHVRHLCSLHPAAKHGGREMVQLFEKGYGKDPAEIAFRAISHARD 504
AA DTFRA A +QL A+ G E+V +G A + +A+ ++
Sbjct: 191 AAGDTFRAAASDQLEIW----------AERTGCEIV--VAEGDKAKAATVLSKAVKRGKE 238
Query: 505 MHIDVVLIDTAGRMQDNEPLM-------RALAKLVKVNQPDLLLFVGEALVGNEAVDQLV 557
DVVL DT+GR+ N LM +A+ K+V P+ +L V + G + Q
Sbjct: 239 EGYDVVLCDTSGRLHTNYSLMEELIACKKAVGKIVS-GAPNEILLVLDGNTGLNMLPQAR 297
Query: 558 KFNNAMADHSLSDNPHLIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGTGQTYTDLK 617
+FN + I G++LTK D + G +S+ G P+ F+G G+ DL+
Sbjct: 298 EFNEVVG----------ITGLILTKLDG-SARGGCVVSVVEELGIPVKFIGVGEAVEDLQ 346
Query: 618 SLNAKAVVNAL 628
+ +A VNA+
Sbjct: 347 PFDPEAFVNAI 357
>pdb|4AK9|A Chain A, Structure Of Chloroplast Ftsy From Physcomitrella Patens
pdb|4AK9|B Chain B, Structure Of Chloroplast Ftsy From Physcomitrella Patens
Length = 318
Score = 97.4 bits (241), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 88/312 (28%), Positives = 148/312 (47%), Gaps = 42/312 (13%)
Query: 325 NLTKSDMKPILEKMKDHLIAKNVAADIAVKLCDSVALKLEGKVLGTFESVANTVKSTLTD 384
NL +S+ IL+++++ L+ + A+K+ D++ + + G +S +K L
Sbjct: 41 NLDESE--SILDELEEVLLVSDFGPKTALKIVDTIRKDI---LAGRLKS-GPQIKEALKK 94
Query: 385 ALVQILSPKRRVDILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLI 444
+ ++L+ + L+ RP V+ GVNG GK+T L K+ + + VL+
Sbjct: 95 NIFKLLTERVTTTELQLG-----NSRPAVLMIVGVNGGGKTTTLGKLANRFKKEGVKVLM 149
Query: 445 AACDTFRAGAVEQLRTHVRHLCSLHPAAKHGGREMVQLFEKGYGKDPAEIAFRAISHARD 504
AA DTFRA A EQL A+ G E+V +G PA + +A+ A +
Sbjct: 150 AAGDTFRAAAGEQLEVW----------AQRTGSEIV--MAEGPKPRPAAVLSQAVRRAVE 197
Query: 505 MHIDVVLIDTAGRMQDNEPLM-------RALAKLVKVNQPDLLLFVGEALVGNEAVDQLV 557
DVVL DT+GR+ N LM RA++K + + P+ +L V + G + Q
Sbjct: 198 EDFDVVLCDTSGRLHTNYNLMEELRGCKRAVSKALS-SAPNEVLLVLDGTTGLNMLAQAR 256
Query: 558 KFNNAMADHSLSDNPHLIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGTGQTYTDLK 617
+FN + + G +LTK D + G +S+ P+ FVG G+ DL+
Sbjct: 257 EFNQVIG----------VTGFILTKLDGT-ARGGCVVSVVDELSIPVKFVGVGEGIDDLQ 305
Query: 618 SLNAKAVVNALM 629
+A++ V+AL
Sbjct: 306 PFDAQSFVDALF 317
>pdb|3DM5|A Chain A, Structures Of Srp54 And Srp19, The Two Proteins Assembling
The Ribonucleic Core Of The Signal Recognition Particle
From The Archaeon Pyrococcus Furiosus.
pdb|3DM5|B Chain B, Structures Of Srp54 And Srp19, The Two Proteins Assembling
The Ribonucleic Core Of The Signal Recognition Particle
From The Archaeon Pyrococcus Furiosus
Length = 443
Score = 97.1 bits (240), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 57/220 (25%), Positives = 107/220 (48%), Gaps = 24/220 (10%)
Query: 410 RPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLH 469
+P ++ G+ G GK+T +AK+ + + V + DT+R GA QLR +
Sbjct: 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLL------- 151
Query: 470 PAAKHGGREMVQLFEKGYGKDPAEIAFRAISHARDMHIDVVLIDTAGRMQDNEPLMRALA 529
R +++F KD ++A + + + +D++++DTAGR ++++ L+ +
Sbjct: 152 ------DRYHIEVFGNPQEKDAIKLAKEGVDYFKSKGVDIIIVDTAGRHKEDKALIEEMK 205
Query: 530 KLVKVNQPDLLLFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTIDDK 589
++ V P ++ V + +G +A +Q + F A I I++TK D K
Sbjct: 206 QISNVIHPHEVILVIDGTIGQQAYNQALAFKEATP----------IGSIIVTKLDG-SAK 254
Query: 590 VGAAISMTYITGQPIVFVGTGQTYTDLKSLNAKAVVNALM 629
G A+S TG PI F+GTG+ D++ + V+ L+
Sbjct: 255 GGGALSAVAATGAPIKFIGTGEKIDDIEPFDPPRFVSRLL 294
>pdb|1VMA|A Chain A, Crystal Structure Of Cell Division Protein Ftsy (Tm0570)
From Thermotoga Maritima At 1.60 A Resolution
pdb|1VMA|B Chain B, Crystal Structure Of Cell Division Protein Ftsy (Tm0570)
From Thermotoga Maritima At 1.60 A Resolution
Length = 306
Score = 93.6 bits (231), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 86/289 (29%), Positives = 138/289 (47%), Gaps = 46/289 (15%)
Query: 347 VAADIAVKLCDSVALKLEGKVLGTFESVANTVKSTLTDALVQILSPKRRVDILRDALEAK 406
+ AD+ V+ + + +LE K ES L + +++IL+ ++++ +
Sbjct: 56 IQADVGVETTEYILERLEEKDGDALES--------LKEIILEILNFDTKLNVPPEP---- 103
Query: 407 KQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLC 466
PFV+ GVNG GK+T+ K+ ++ +V++AA DTFRA A+EQL+
Sbjct: 104 ----PFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKI------ 153
Query: 467 SLHPAAKHGGREMVQLFEKGYGKDPAEIAFRAISHARDMHIDVVLIDTAGRMQDNEPLMR 526
G R + G DPA +AF A++HA + DVV+IDTAGR+ + LM
Sbjct: 154 -------WGERVGATVISHSEGADPAAVAFDAVAHALARNKDVVIIDTAGRLHTKKNLME 206
Query: 527 ALAKLVKV------NQPDLLLFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVL 580
L K+ +V + P L V +A G + Q F A+ + GI+L
Sbjct: 207 ELRKVHRVVKKKIPDAPHETLLVIDATTGQNGLVQAKIFKEAVN----------VTGIIL 256
Query: 581 TKFDTIDDKVGAAISMTYITGQPIVFVGTGQTYTDLKSLNAKAVVNALM 629
TK D K G +++ G PI F+G G+ DL+ + +A V L+
Sbjct: 257 TKLDGT-AKGGITLAIARELGIPIKFIGVGEKAEDLRPFDPEAFVEVLL 304
>pdb|1QZW|A Chain A, Crystal Structure Of The Complete Core Of Archaeal Srp And
Implications For Inter-Domain Communication
pdb|1QZW|C Chain C, Crystal Structure Of The Complete Core Of Archaeal Srp And
Implications For Inter-Domain Communication
pdb|1QZW|E Chain E, Crystal Structure Of The Complete Core Of Archaeal Srp And
Implications For Inter-Domain Communication
pdb|1QZW|G Chain G, Crystal Structure Of The Complete Core Of Archaeal Srp And
Implications For Inter-Domain Communication
pdb|1QZX|A Chain A, Crystal Structure Of The Complete Core Of Archaeal Srp And
Implications For Inter-Domain Communication
pdb|1QZX|B Chain B, Crystal Structure Of The Complete Core Of Archaeal Srp And
Implications For Inter-Domain Communication
Length = 440
Score = 92.0 bits (227), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 62/221 (28%), Positives = 111/221 (50%), Gaps = 26/221 (11%)
Query: 411 PFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHP 470
PF++ GV G GK+T K+ ++ + V + A D +R A +QL
Sbjct: 104 PFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQL------------ 151
Query: 471 AAKHGGREMVQLFEKGYGKDPAEIAFRAISHARDMHIDVVLIDTAGRMQDNE--PLMRAL 528
+ G + VQ++ + ++P EIA + + +D++++DTAGR E L+ +
Sbjct: 152 -LQLGNQIGVQVYGEPNNQNPIEIAKKGVDIFVKNKMDIIIVDTAGRHGYGEETKLLEEM 210
Query: 529 AKLVKVNQPDLLLFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTIDD 588
++ V +PD ++ V +A +G +A D +F+ A +P I +++TK D
Sbjct: 211 KEMYDVLKPDDVILVIDASIGQKAYDLASRFHQA--------SP--IGSVIITKMDGT-A 259
Query: 589 KVGAAISMTYITGQPIVFVGTGQTYTDLKSLNAKAVVNALM 629
K G A+S TG I F+GTG+ +L++ NAK V+ ++
Sbjct: 260 KGGGALSAVVATGATIKFIGTGEKIDELETFNAKRFVSRIL 300
>pdb|3KL4|A Chain A, Recognition Of A Signal Peptide By The Signal Recognition
Particle
Length = 433
Score = 92.0 bits (227), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 62/221 (28%), Positives = 111/221 (50%), Gaps = 26/221 (11%)
Query: 411 PFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHP 470
PF++ GV G GK+T K+ ++ + V + A D +R A +QL
Sbjct: 97 PFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQL------------ 144
Query: 471 AAKHGGREMVQLFEKGYGKDPAEIAFRAISHARDMHIDVVLIDTAGRMQDNE--PLMRAL 528
+ G + VQ++ + ++P EIA + + +D++++DTAGR E L+ +
Sbjct: 145 -LQLGNQIGVQVYGEPNNQNPIEIAKKGVDIFVKNKMDIIIVDTAGRHGYGEETKLLEEM 203
Query: 529 AKLVKVNQPDLLLFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTIDD 588
++ V +PD ++ V +A +G +A D +F+ A +P I +++TK D
Sbjct: 204 KEMYDVLKPDDVILVIDASIGQKAYDLASRFHQA--------SP--IGSVIITKMDGT-A 252
Query: 589 KVGAAISMTYITGQPIVFVGTGQTYTDLKSLNAKAVVNALM 629
K G A+S TG I F+GTG+ +L++ NAK V+ ++
Sbjct: 253 KGGGALSAVVATGATIKFIGTGEKIDELETFNAKRFVSRIL 293
>pdb|2J37|W Chain W, Model Of Mammalian Srp Bound To 80s Rncs
Length = 504
Score = 85.9 bits (211), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 51/222 (22%), Positives = 103/222 (46%), Gaps = 24/222 (10%)
Query: 408 QGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCS 467
+G+ V+ F G+ G GK+T +K+ ++ + DTFRAGA +QL+
Sbjct: 98 KGKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLK-------- 149
Query: 468 LHPAAKHGGREMVQLFEKGYGKDPAEIAFRAISHARDMHIDVVLIDTAGRMQDNEPLMRA 527
++ + + + DP IA + ++ + +++++DT+GR + + L
Sbjct: 150 -----QNATKARIPFYGSYTEMDPVIIASEGVEKFKNENFEIIIVDTSGRHKQEDSLFEE 204
Query: 528 LAKLVKVNQPDLLLFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTID 587
+ ++ QPD +++V +A +G Q F + + + +++TK D
Sbjct: 205 MLQVANAIQPDNIVYVMDASIGQACEAQAKAFKDKVD----------VASVIVTKLDG-H 253
Query: 588 DKVGAAISMTYITGQPIVFVGTGQTYTDLKSLNAKAVVNALM 629
K G A+S T PI+F+GTG+ D + + ++ L+
Sbjct: 254 AKGGGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLL 295
>pdb|3NDB|B Chain B, Crystal Structure Of A Signal Sequence Bound To The Signal
Recognition Particle
Length = 454
Score = 83.6 bits (205), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 78/309 (25%), Positives = 140/309 (45%), Gaps = 51/309 (16%)
Query: 331 MKPILEKMKDHLIAKNVAADIAVKLCDSVALK-LEGKVLGTFESVANTVKSTLTDALVQI 389
+K +++ ++ LI +V + +K+ + + LE K + +K + + LV++
Sbjct: 26 IKEVIKDIQRALIQADVNVKLVLKMSKEIERRALEEKTPKGLSKKEHIIK-IVYEELVKL 84
Query: 390 LSPKRRVDILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDT 449
L + + + L KKQ V+ G+ G GK+T AK+ ++ + L + A DT
Sbjct: 85 LGEEAK----KLELNPKKQN---VILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADT 137
Query: 450 FRAGAVEQLRTHVRHLCSLHPAAKHGGREMVQLFEKG----YG-----KDPAEIAFRAIS 500
+R A EQL+ QL EK YG K P +I +
Sbjct: 138 YRPAAYEQLK---------------------QLAEKIHVPIYGDETRTKSPVDIVKEGME 176
Query: 501 HARDMHIDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQLVKFN 560
+ DV++IDTAGR ++ + L+ + ++ ++ PD ++ V + +G +A Q F
Sbjct: 177 KFK--KADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQQAGIQAKAFK 234
Query: 561 NAMADHSLSDNPHLIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGTGQTYTDLKSLN 620
A+ + I I++TK D K G A+S T PI F+G G+ DL+ +
Sbjct: 235 EAVGE---------IGSIIVTKLDG-SAKGGGALSAVAETKAPIKFIGIGEGIDDLEPFD 284
Query: 621 AKAVVNALM 629
K ++ L+
Sbjct: 285 PKKFISRLL 293
>pdb|2V3C|C Chain C, Crystal Structure Of The Srp54-Srp19-7s.S Srp Rna Complex
Of M. Jannaschii
pdb|2V3C|D Chain D, Crystal Structure Of The Srp54-Srp19-7s.S Srp Rna Complex
Of M. Jannaschii
Length = 432
Score = 83.6 bits (205), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 78/309 (25%), Positives = 140/309 (45%), Gaps = 51/309 (16%)
Query: 331 MKPILEKMKDHLIAKNVAADIAVKLCDSVALK-LEGKVLGTFESVANTVKSTLTDALVQI 389
+K +++ ++ LI +V + +K+ + + LE K + +K + + LV++
Sbjct: 26 IKEVIKDIQRALIQADVNVKLVLKMSKEIERRALEEKTPKGLSKKEHIIK-IVYEELVKL 84
Query: 390 LSPKRRVDILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDT 449
L + + + L KKQ V+ G+ G GK+T AK+ ++ + L + A DT
Sbjct: 85 LGEEAK----KLELNPKKQN---VILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADT 137
Query: 450 FRAGAVEQLRTHVRHLCSLHPAAKHGGREMVQLFEKG----YG-----KDPAEIAFRAIS 500
+R A EQL+ QL EK YG K P +I +
Sbjct: 138 YRPAAYEQLK---------------------QLAEKIHVPIYGDETRTKSPVDIVKEGME 176
Query: 501 HARDMHIDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQLVKFN 560
+ DV++IDTAGR ++ + L+ + ++ ++ PD ++ V + +G +A Q F
Sbjct: 177 KFK--KADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQQAGIQAKAFK 234
Query: 561 NAMADHSLSDNPHLIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGTGQTYTDLKSLN 620
A+ + I I++TK D K G A+S T PI F+G G+ DL+ +
Sbjct: 235 EAVGE---------IGSIIVTKLDG-SAKGGGALSAVAETKAPIKFIGIGEGIDDLEPFD 284
Query: 621 AKAVVNALM 629
K ++ L+
Sbjct: 285 PKKFISRLL 293
>pdb|1J8Y|F Chain F, Signal Recognition Particle Conserved Gtpase Domain From
A. Ambivalens T112a Mutant
Length = 297
Score = 79.3 bits (194), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 73/311 (23%), Positives = 137/311 (44%), Gaps = 34/311 (10%)
Query: 320 LVGSKNLTKSDMKPILEKMKDHLIAKNVAADIAVKLCDSVALKLEGKVLGTFESVANTVK 379
L GS + K+ ++ +++++ LI+ +V + L + + +L+ + T+
Sbjct: 15 LTGSSSYDKA-VEDFIKELQKSLISADVNVKLVFSLTNKIKERLKNEKPPTYIERREWFI 73
Query: 380 STLTDALVQILSPKRRVDILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENN 439
+ D L + + ++ D + P+V+ GV G GK+T K+ ++ +
Sbjct: 74 KIVYDELSNLFGGDKEPKVIPDKI-------PYVIMLVGVQGTGKATTAGKLAYFYKKKG 126
Query: 440 LNVLIAACDTFRAGAVEQLRTHVRHLCSLHPAAKHGGREMVQLFEKGYGKDPAEIAFRAI 499
V + D +R A+EQL+ + + V ++ + KD IA R +
Sbjct: 127 FKVGLVGADVYRPAALEQLQQLGQQIG-------------VPVYGEPGEKDVVGIAKRGV 173
Query: 500 SHARDMHIDVVLIDTAGRMQDNE--PLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQLV 557
++++++DTAGR E L+ + + + +PD + V +A +G +A D
Sbjct: 174 EKFLSEKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQKAYDLAS 233
Query: 558 KFNNAMADHSLSDNPHLIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGTGQTYTDLK 617
KFN A I I++TK D K G A+S TG I F+GTG+ +L+
Sbjct: 234 KFNQASK----------IGTIIITKMDGT-AKGGGALSAVAATGATIKFIGTGEKIDELE 282
Query: 618 SLNAKAVVNAL 628
N + V L
Sbjct: 283 VFNPRRFVARL 293
>pdb|1J8M|F Chain F, Signal Recognition Particle Conserved Gtpase Domain From
A. Ambivalens
Length = 297
Score = 79.3 bits (194), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 73/311 (23%), Positives = 137/311 (44%), Gaps = 34/311 (10%)
Query: 320 LVGSKNLTKSDMKPILEKMKDHLIAKNVAADIAVKLCDSVALKLEGKVLGTFESVANTVK 379
L GS + K+ ++ +++++ LI+ +V + L + + +L+ + T+
Sbjct: 15 LTGSSSYDKA-VEDFIKELQKSLISADVNVKLVFSLTNKIKERLKNEKPPTYIERREWFI 73
Query: 380 STLTDALVQILSPKRRVDILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENN 439
+ D L + + ++ D + P+V+ GV G GK+T K+ ++ +
Sbjct: 74 KIVYDELSNLFGGDKEPKVIPDKI-------PYVIMLVGVQGTGKTTTAGKLAYFYKKKG 126
Query: 440 LNVLIAACDTFRAGAVEQLRTHVRHLCSLHPAAKHGGREMVQLFEKGYGKDPAEIAFRAI 499
V + D +R A+EQL+ + + V ++ + KD IA R +
Sbjct: 127 FKVGLVGADVYRPAALEQLQQLGQQIG-------------VPVYGEPGEKDVVGIAKRGV 173
Query: 500 SHARDMHIDVVLIDTAGRMQDNE--PLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQLV 557
++++++DTAGR E L+ + + + +PD + V +A +G +A D
Sbjct: 174 EKFLSEKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQKAYDLAS 233
Query: 558 KFNNAMADHSLSDNPHLIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGTGQTYTDLK 617
KFN A I I++TK D K G A+S TG I F+GTG+ +L+
Sbjct: 234 KFNQASK----------IGTIIITKMDGT-AKGGGALSAVAATGATIKFIGTGEKIDELE 282
Query: 618 SLNAKAVVNAL 628
N + V L
Sbjct: 283 VFNPRRFVARL 293
>pdb|2J7P|D Chain D, Gmppnp-Stabilized Ng Domain Complex Of The Srp Gtpases Ffh
And Ftsy
pdb|2J7P|E Chain E, Gmppnp-Stabilized Ng Domain Complex Of The Srp Gtpases Ffh
And Ftsy
Length = 283
Score = 79.3 bits (194), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 74/264 (28%), Positives = 121/264 (45%), Gaps = 35/264 (13%)
Query: 378 VKSTLTDALVQILSPKRRVDILRDALEAKKQGRPF-----VMAFCGVNGVGKSTNLAKIC 432
+K + + LV +L P R LR ++ +P V+ GVNGVGK+T +AK+
Sbjct: 43 LKEAVKEKLVGMLEPDERRATLRKLGFNPQKPKPVEPKGRVVLVVGVNGVGKTTTIAKLG 102
Query: 433 FWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHPAAKHGGREMVQLFEKGYGKDPA 492
+ V+ A DTFRA QL ++ G R + + + G DPA
Sbjct: 103 RYYQNLGKKVMFCAGDTFRAAGGTQL-------------SEWGKRLSIPVIQGPEGTDPA 149
Query: 493 EIAFRAISHARDMHIDVVLIDTAGRMQDNEPLMRALAKLVKV------NQPDLLLFVGEA 546
+A+ A+ + D++ +DTAGR+ LM L K+ + +P + V +A
Sbjct: 150 ALAYDAVQAMKARGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDA 209
Query: 547 LVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTIDDKVGAAISMTYITGQPIVF 606
+ G ++Q KF+ A+ + G+++TK D K G I + PI F
Sbjct: 210 VTGQNGLEQAKKFHEAVG----------LTGVIVTKLDGT-AKGGVLIPIVRTLKVPIKF 258
Query: 607 VGTGQTYTDLKSLNAKAVVNALMK 630
VG G+ DL+ + +A V AL++
Sbjct: 259 VGVGEGPDDLQPFDPEAFVEALLE 282
>pdb|2CNW|D Chain D, Gdpalf4 Complex Of The Srp Gtpases Ffh And Ftsy
pdb|2CNW|E Chain E, Gdpalf4 Complex Of The Srp Gtpases Ffh And Ftsy
pdb|2CNW|F Chain F, Gdpalf4 Complex Of The Srp Gtpases Ffh And Ftsy
pdb|2IYL|D Chain D, Structure Of An Ftsy:gdp Complex
Length = 284
Score = 79.3 bits (194), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 74/264 (28%), Positives = 121/264 (45%), Gaps = 35/264 (13%)
Query: 378 VKSTLTDALVQILSPKRRVDILRDALEAKKQGRPF-----VMAFCGVNGVGKSTNLAKIC 432
+K + + LV +L P R LR ++ +P V+ GVNGVGK+T +AK+
Sbjct: 44 LKEAVKEKLVGMLEPDERRATLRKLGFNPQKPKPVEPKGRVVLVVGVNGVGKTTTIAKLG 103
Query: 433 FWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHPAAKHGGREMVQLFEKGYGKDPA 492
+ V+ A DTFRA QL ++ G R + + + G DPA
Sbjct: 104 RYYQNLGKKVMFCAGDTFRAAGGTQL-------------SEWGKRLSIPVIQGPEGTDPA 150
Query: 493 EIAFRAISHARDMHIDVVLIDTAGRMQDNEPLMRALAKLVKV------NQPDLLLFVGEA 546
+A+ A+ + D++ +DTAGR+ LM L K+ + +P + V +A
Sbjct: 151 ALAYDAVQAMKARGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDA 210
Query: 547 LVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTIDDKVGAAISMTYITGQPIVF 606
+ G ++Q KF+ A+ + G+++TK D K G I + PI F
Sbjct: 211 VTGQNGLEQAKKFHEAVG----------LTGVIVTKLDGT-AKGGVLIPIVRTLKVPIKF 259
Query: 607 VGTGQTYTDLKSLNAKAVVNALMK 630
VG G+ DL+ + +A V AL++
Sbjct: 260 VGVGEGPDDLQPFDPEAFVEALLE 283
>pdb|1OKK|D Chain D, Homo-Heterodimeric Complex Of The Srp Gtpases
pdb|2XKV|D Chain D, Atomic Model Of The Srp-Ftsy Early Conformation
Length = 303
Score = 79.0 bits (193), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 74/264 (28%), Positives = 121/264 (45%), Gaps = 35/264 (13%)
Query: 378 VKSTLTDALVQILSPKRRVDILRDALEAKKQGRPF-----VMAFCGVNGVGKSTNLAKIC 432
+K + + LV +L P R LR ++ +P V+ GVNGVGK+T +AK+
Sbjct: 63 LKEAVKEKLVGMLEPDERRATLRKLGFNPQKPKPVEPKGRVVLVVGVNGVGKTTTIAKLG 122
Query: 433 FWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHPAAKHGGREMVQLFEKGYGKDPA 492
+ V+ A DTFRA QL ++ G R + + + G DPA
Sbjct: 123 RYYQNLGKKVMFCAGDTFRAAGGTQL-------------SEWGKRLSIPVIQGPEGTDPA 169
Query: 493 EIAFRAISHARDMHIDVVLIDTAGRMQDNEPLMRALAKLVKV------NQPDLLLFVGEA 546
+A+ A+ + D++ +DTAGR+ LM L K+ + +P + V +A
Sbjct: 170 ALAYDAVQAMKARGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDA 229
Query: 547 LVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTIDDKVGAAISMTYITGQPIVF 606
+ G ++Q KF+ A+ + G+++TK D K G I + PI F
Sbjct: 230 VTGQNGLEQAKKFHEAVG----------LTGVIVTKLDGT-AKGGVLIPIVRTLKVPIKF 278
Query: 607 VGTGQTYTDLKSLNAKAVVNALMK 630
VG G+ DL+ + +A V AL++
Sbjct: 279 VGVGEGPDDLQPFDPEAFVEALLE 302
>pdb|2Q9A|A Chain A, Structure Of Apo Ftsy
pdb|2Q9A|B Chain B, Structure Of Apo Ftsy
pdb|2Q9B|A Chain A, Structure Of Ftsy:gmppnp Complex
pdb|2Q9B|B Chain B, Structure Of Ftsy:gmppnp Complex
pdb|2Q9C|A Chain A, Structure Of Ftsy:gmppnp With Mgcl Complex
pdb|2Q9C|B Chain B, Structure Of Ftsy:gmppnp With Mgcl Complex
Length = 304
Score = 79.0 bits (193), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 74/264 (28%), Positives = 121/264 (45%), Gaps = 35/264 (13%)
Query: 378 VKSTLTDALVQILSPKRRVDILRDALEAKKQGRPF-----VMAFCGVNGVGKSTNLAKIC 432
+K + + LV +L P R LR ++ +P V+ GVNGVGK+T +AK+
Sbjct: 64 LKEAVKEKLVGMLEPDERRATLRKLGFNPQKPKPVEPKGRVVLVVGVNGVGKTTTIAKLG 123
Query: 433 FWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHPAAKHGGREMVQLFEKGYGKDPA 492
+ V+ A DTFRA QL ++ G R + + + G DPA
Sbjct: 124 RYYQNLGKKVMFCAGDTFRAAGGTQL-------------SEWGKRLSIPVIQGPEGTDPA 170
Query: 493 EIAFRAISHARDMHIDVVLIDTAGRMQDNEPLMRALAKLVKV------NQPDLLLFVGEA 546
+A+ A+ + D++ +DTAGR+ LM L K+ + +P + V +A
Sbjct: 171 ALAYDAVQAMKARGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDA 230
Query: 547 LVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTIDDKVGAAISMTYITGQPIVF 606
+ G ++Q KF+ A+ + G+++TK D K G I + PI F
Sbjct: 231 VTGQNGLEQAKKFHEAVG----------LTGVIVTKLDGT-AKGGVLIPIVRTLKVPIKF 279
Query: 607 VGTGQTYTDLKSLNAKAVVNALMK 630
VG G+ DL+ + +A V AL++
Sbjct: 280 VGVGEGPDDLQPFDPEAFVEALLE 303
>pdb|1RJ9|A Chain A, Structure Of The Heterodimer Of The Conserved Gtpase
Domains Signal Recognition Particle (Ffh) And Its
Receptor (Ftsy)
Length = 304
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 73/264 (27%), Positives = 120/264 (45%), Gaps = 35/264 (13%)
Query: 378 VKSTLTDALVQILSPKRRVDILRDALEAKKQGRPF-----VMAFCGVNGVGKSTNLAKIC 432
+K + + LV +L P R LR ++ +P V+ GVNGVGK+T +AK+
Sbjct: 64 LKEAVKEKLVGMLEPDERRATLRKLGFNPQKPKPVEPKGRVVLVVGVNGVGKTTTIAKLG 123
Query: 433 FWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHPAAKHGGREMVQLFEKGYGKDPA 492
+ V+ A DTFRA QL ++ G R + + + G D A
Sbjct: 124 RYYQNLGKKVMFCAGDTFRAAGGTQL-------------SEWGKRLSIPVIQGPEGTDSA 170
Query: 493 EIAFRAISHARDMHIDVVLIDTAGRMQDNEPLMRALAKLVKV------NQPDLLLFVGEA 546
+A+ A+ + D++ +DTAGR+ LM L K+ + +P + V +A
Sbjct: 171 ALAYDAVQAMKARGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDA 230
Query: 547 LVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTIDDKVGAAISMTYITGQPIVF 606
+ G ++Q KF+ A+ + G+++TK D K G I + PI F
Sbjct: 231 VTGQNGLEQAKKFHEAVG----------LTGVIVTKLDGT-AKGGVLIPIVRTLKVPIKF 279
Query: 607 VGTGQTYTDLKSLNAKAVVNALMK 630
VG G+ DL+ + +A V AL++
Sbjct: 280 VGVGEGPDDLQPFDPEAFVEALLE 303
>pdb|2PX0|A Chain A, Crystal Structure Of Flhf Complexed With GmppnpMG(2+)
pdb|2PX0|B Chain B, Crystal Structure Of Flhf Complexed With GmppnpMG(2+)
pdb|2PX0|C Chain C, Crystal Structure Of Flhf Complexed With GmppnpMG(2+)
pdb|2PX0|D Chain D, Crystal Structure Of Flhf Complexed With GmppnpMG(2+)
pdb|2PX0|E Chain E, Crystal Structure Of Flhf Complexed With GmppnpMG(2+)
pdb|2PX0|F Chain F, Crystal Structure Of Flhf Complexed With GmppnpMG(2+)
pdb|2PX0|G Chain G, Crystal Structure Of Flhf Complexed With GmppnpMG(2+)
pdb|2PX0|H Chain H, Crystal Structure Of Flhf Complexed With GmppnpMG(2+)
pdb|2PX3|A Chain A, Crystal Structure Of Flhf Complexed With GtpMG(2+)
pdb|3SYN|A Chain A, Crystal Structure Of Flhf In Complex With Its Activator
pdb|3SYN|B Chain B, Crystal Structure Of Flhf In Complex With Its Activator
pdb|3SYN|C Chain C, Crystal Structure Of Flhf In Complex With Its Activator
pdb|3SYN|D Chain D, Crystal Structure Of Flhf In Complex With Its Activator
Length = 296
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 57/131 (43%), Gaps = 34/131 (25%)
Query: 397 DILRDAL-EAKKQGRP----FVMAFCGVNGVGKSTNLAKIC-FWLIENNLNVLIAACDTF 450
+IL D L A K P +++ F G G GK+T LAK+ ++E + + DT+
Sbjct: 87 EILCDMLPSADKWQEPIHSKYIVLF-GSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTY 145
Query: 451 RAGAVEQLRTHVRHLCSLHPAAKHGGREMVQLFEKGYGKDPAEIAF--RAISHARDM--H 506
R AVEQL+T+ L + P E+ + A+++
Sbjct: 146 RIAAVEQLKTYAELL-----------------------QAPLEVCYTKEEFQQAKELFSE 182
Query: 507 IDVVLIDTAGR 517
D V +DTAGR
Sbjct: 183 YDHVFVDTAGR 193
>pdb|3TK1|A Chain A, Crystal Structure Of A Meab And Rv1496 Ortholog From
Mycobacterium Thermoresistible Bound To Gdp
pdb|3TK1|B Chain B, Crystal Structure Of A Meab And Rv1496 Ortholog From
Mycobacterium Thermoresistible Bound To Gdp
Length = 330
Score = 33.9 bits (76), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Query: 409 GRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACD--TFRAG 453
GR + GV GVGKST++ + LIE V + A D + R+G
Sbjct: 54 GRAMHVGITGVPGVGKSTSIEALGMHLIEQGHRVAVLAVDPSSVRSG 100
>pdb|3A4L|A Chain A, Crystal Structure Of Archaeal O-Phosphoseryl-Trna(Sec)
Kinase
pdb|3A4L|B Chain B, Crystal Structure Of Archaeal O-Phosphoseryl-Trna(Sec)
Kinase
pdb|3A4M|A Chain A, Crystal Structure Of Archaeal O-Phosphoseryl-Trna(Sec)
Kinase
pdb|3A4M|B Chain B, Crystal Structure Of Archaeal O-Phosphoseryl-Trna(Sec)
Kinase
pdb|3A4N|A Chain A, Crystal Structure Of Archaeal O-Phosphoseryl-Trna(Sec)
Kinase
pdb|3A4N|B Chain B, Crystal Structure Of Archaeal O-Phosphoseryl-Trna(Sec)
Kinase
pdb|3AM1|A Chain A, Crystal Structure Of O-Phosphoseryl-Trna Kinase Complexed
With Anticodon-StemLOOP TRUNCATED TRNA(SEC)
Length = 260
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 6/48 (12%)
Query: 409 GRPFVMAFCGVNGVGKST---NLAKICFWLIENNLNVLIAACDTFRAG 453
G ++ G+ GVGKST NLAKI L +NN++V++ D R
Sbjct: 2 GDIMLIILTGLPGVGKSTFSKNLAKI---LSKNNIDVIVLGSDLIRES 46
>pdb|3ADB|A Chain A, Crystal Structure Of O-Phosphoseryl-Trna Kinase Complexed
With Selenocysteine Trna And Amppnp (Crystal Type 1)
pdb|3ADB|B Chain B, Crystal Structure Of O-Phosphoseryl-Trna Kinase Complexed
With Selenocysteine Trna And Amppnp (Crystal Type 1)
pdb|3ADC|A Chain A, Crystal Structure Of O-Phosphoseryl-Trna Kinase Complexed
With Selenocysteine Trna And Amppnp (Crystal Type 2)
pdb|3ADC|B Chain B, Crystal Structure Of O-Phosphoseryl-Trna Kinase Complexed
With Selenocysteine Trna And Amppnp (Crystal Type 2)
pdb|3ADD|A Chain A, Crystal Structure Of O-Phosphoseryl-Trna Kinase Complexed
With Selenocysteine Trna And Amppnp (Crystal Type 3)
pdb|3ADD|B Chain B, Crystal Structure Of O-Phosphoseryl-Trna Kinase Complexed
With Selenocysteine Trna And Amppnp (Crystal Type 3)
Length = 259
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 26/44 (59%), Gaps = 6/44 (13%)
Query: 413 VMAFCGVNGVGKST---NLAKICFWLIENNLNVLIAACDTFRAG 453
++ G+ GVGKST NLAKI L +NN++V++ D R
Sbjct: 13 LIILTGLPGVGKSTFSKNLAKI---LSKNNIDVIVLGSDLIRES 53
>pdb|3NXS|A Chain A, Crystal Structure Of LaoAO TRANSPORT SYSTEM FROM
MYCOBACTERIUM Smegmatis Bound To Gdp
Length = 329
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 4/67 (5%)
Query: 409 GRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACD---TFRAGAVEQLRTHVRHL 465
G + GV GVGKST + + LIE V + A D T G++ +T + L
Sbjct: 55 GSAMHVGITGVPGVGKSTTIEALGMHLIEAGHRVAVLAVDPSSTRTGGSILGDKTRMARL 114
Query: 466 CSLHPAA 472
+HP A
Sbjct: 115 A-VHPDA 120
>pdb|3MD0|A Chain A, Crystal Structure Of ArginineORNITHINE TRANSPORT SYSTEM
ATPASE FROM Mycobacterium Tuberculosis Bound To Gdp (A
Ras-Like Gtpase Superfamily Protein)
pdb|3P32|A Chain A, Hydrolysis Of Gtp To Gdp By An Mcm-Associated And Meab-
And Mmaa-Like G-Protein From Mycobacterium Tuberculosis
pdb|4GT1|A Chain A, Crystal Structure Of A Meab- And Mmaa-Like Gtpase From
Mycobacterium Tuberculosis Bound To 2'-Deoxyguanosine
Diphosphate
Length = 355
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 4/67 (5%)
Query: 409 GRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACD---TFRAGAVEQLRTHVRHL 465
G + GV GVGKST + + LIE V + A D T G++ +T + L
Sbjct: 77 GNAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVDPSSTRTGGSILGDKTRMARL 136
Query: 466 CSLHPAA 472
+HP A
Sbjct: 137 A-VHPNA 142
>pdb|2FUL|A Chain A, Crystal Structure Of The C-Terminal Domain Of S.
Cerevisiae Eif5
pdb|2FUL|B Chain B, Crystal Structure Of The C-Terminal Domain Of S.
Cerevisiae Eif5
pdb|2FUL|C Chain C, Crystal Structure Of The C-Terminal Domain Of S.
Cerevisiae Eif5
pdb|2FUL|D Chain D, Crystal Structure Of The C-Terminal Domain Of S.
Cerevisiae Eif5
pdb|2FUL|E Chain E, Crystal Structure Of The C-Terminal Domain Of S.
Cerevisiae Eif5
pdb|2FUL|F Chain F, Crystal Structure Of The C-Terminal Domain Of S.
Cerevisiae Eif5
Length = 177
Score = 28.9 bits (63), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 21/95 (22%), Positives = 45/95 (47%), Gaps = 5/95 (5%)
Query: 27 PSLNALIKSVILQERGGNQVFEHNGLVLKHKLDNEFDLVFVVGFQKILQLSYVD--KLLD 84
P + ++ + E N++ EHN K + E++ F+ G ++ L L + D LL
Sbjct: 50 PKIGCVLAQCLFDEDIVNEIAEHNAFFTKILVTPEYEKNFMGGIERFLGLEHKDLIPLLP 109
Query: 85 DVHLEFRDKYKNELGSDMHLYDYDFESTYNVLLKE 119
+ ++ Y N++ S+ + + +S+ + KE
Sbjct: 110 KILVQL---YNNDIISEEEIMRFGTKSSKKFVPKE 141
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.386
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,025,193
Number of Sequences: 62578
Number of extensions: 609045
Number of successful extensions: 1755
Number of sequences better than 100.0: 52
Number of HSP's better than 100.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 1637
Number of HSP's gapped (non-prelim): 52
length of query: 630
length of database: 14,973,337
effective HSP length: 105
effective length of query: 525
effective length of database: 8,402,647
effective search space: 4411389675
effective search space used: 4411389675
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)