BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11993
(630 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9DBG7|SRPR_MOUSE Signal recognition particle receptor subunit alpha OS=Mus musculus
GN=Srpr PE=1 SV=1
Length = 636
Score = 712 bits (1837), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 379/651 (58%), Positives = 466/651 (71%), Gaps = 37/651 (5%)
Query: 1 MLDFFTIFSKGGIVLWYFQSASQIFTPSLNALIKSVILQERGGNQVFEHNGLVLKHKLDN 60
MLDFFTIFSKGG+VLW FQ S T +NALI+SV+LQERGGN F H L LK+KLDN
Sbjct: 1 MLDFFTIFSKGGLVLWCFQGVSDSCTGPVNALIRSVLLQERGGNNSFTHEALTLKYKLDN 60
Query: 61 EFDLVFVVGFQKILQLSYVDKLLDDVHLEFRDKYKNELGSDMHLY----DYDFESTYNVL 116
+F+LVFVVGFQKIL L+YVDKL+DDVH FRDKY+ E+ L +DF++ + L
Sbjct: 61 QFELVFVVGFQKILTLTYVDKLIDDVHRLFRDKYRTEIQQQSALSLLNGTFDFQNDFLRL 120
Query: 117 LKEAEEWSKVQACIPKQMRTFEESSKSKKTIASMIIDKNKK-EEKSVPSKKKGKAVE--- 172
L+EAEE SK++A P M+ FE+S K+KK + SMI + +K +EK+ +KK+G E
Sbjct: 121 LREAEESSKIRA--PTTMKKFEDSEKAKKPVRSMIETRGEKTKEKAKNNKKRGAKKEGSD 178
Query: 173 -TKVEPVTPPSPVQNGDAGIE------EDIIMINRQKLAMKMGSPKNK----TKPKTPKA 221
T T P+ AG E E++I R++ K G +K TK TPK
Sbjct: 179 GTLATSKTAPAEKSGLSAGPENGELSKEELIRRKREEFIQKHGKGLDKSSKSTKSDTPKE 238
Query: 222 NAKEGKKPRIWELSGDQRDLSTLEYTKDKPSDSNALNITPDTHLV-GKMVGG-IKDLEVE 279
K K PR+WEL G + L+Y+ + + ++ D +L+ G GG ++DL+
Sbjct: 239 KGK--KAPRVWELGGCA-NKEVLDYSTPTTNGTPEAALSEDINLIRGTGPGGQLQDLDCS 295
Query: 280 SSSEEESSDDEEDVRAETSHVSAKKANGKANKGMFSLFRGLVGSKNLTKSDMKPILEKMK 339
SS D+E T + K G GMF + +GLVGSK+L++ DM+ +L+KM+
Sbjct: 296 SS-------DDEGATQNTKPSATKGTLG----GMFGMLKGLVGSKSLSREDMESVLDKMR 344
Query: 340 DHLIAKNVAADIAVKLCDSVALKLEGKVLGTFESVANTVKSTLTDALVQILSPKRRVDIL 399
DHLIAKNVAADIAV+LC+SVA KLEGKV+GTF +V +TVK L ++LVQIL P+RRVD+L
Sbjct: 345 DHLIAKNVAADIAVQLCESVANKLEGKVMGTFSTVTSTVKQALQESLVQILQPQRRVDML 404
Query: 400 RDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLR 459
RD ++A+++ RP+V+ FCGVNGVGKSTNLAKI FWL+EN +VLIAACDTFRAGAVEQLR
Sbjct: 405 RDIMDAQRRQRPYVVTFCGVNGVGKSTNLAKISFWLLENGFSVLIAACDTFRAGAVEQLR 464
Query: 460 THVRHLCSLHPAAKHGGREMVQLFEKGYGKDPAEIAFRAISHARDMHIDVVLIDTAGRMQ 519
TH R L +LHP KHGGR MVQLFEKGYGKD A IA AI+ AR+ DVVL+DTAGRMQ
Sbjct: 465 THTRRLTALHPPEKHGGRTMVQLFEKGYGKDAAGIAMEAIAFARNQGFDVVLVDTAGRMQ 524
Query: 520 DNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIV 579
DN PLM ALAKL+ VN PDL+LFVGEALVGNEAVDQLVKFN A+ADHS++ P LIDGIV
Sbjct: 525 DNAPLMTALAKLITVNTPDLVLFVGEALVGNEAVDQLVKFNRALADHSMAQTPRLIDGIV 584
Query: 580 LTKFDTIDDKVGAAISMTYITGQPIVFVGTGQTYTDLKSLNAKAVVNALMK 630
LTKFDTIDDKVGAAISMTYIT +PIVFVGTGQTY DL+SLNAKAVV ALMK
Sbjct: 585 LTKFDTIDDKVGAAISMTYITSKPIVFVGTGQTYCDLRSLNAKAVVAALMK 635
>sp|Q9U5L1|SRPR_DROME Signal recognition particle receptor subunit alpha homolog
OS=Drosophila melanogaster GN=Gtp-bp PE=1 SV=2
Length = 614
Score = 707 bits (1826), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 358/633 (56%), Positives = 457/633 (72%), Gaps = 22/633 (3%)
Query: 1 MLDFFTIFSKGGIVLWYFQSASQIFTPSLNALIKSVILQERGGN-QVFEHNGLVLKHKLD 59
MLDF IF+KGG+VLW+ ++ F +N+LI+ VIL+ER + +E + L ++ KLD
Sbjct: 1 MLDFVVIFTKGGVVLWHSNASGNSFASCINSLIRGVILEERNTEAKYYEEDHLAVQFKLD 60
Query: 60 NEFDLVFVVGFQKILQLSYVDKLLDDVHLEFRDKYKN-ELGSDMHLYDYDFESTYNVLLK 118
NE DLV+ FQK+++L+Y+D L D+ F++KY + LG D YDF+ Y +L
Sbjct: 61 NELDLVYAAIFQKVIKLNYLDGFLADMQAAFKEKYGDIRLGDD-----YDFDREYRRVLS 115
Query: 119 EAEEWSKVQACIPKQMRTFEESSKSKKTIASMIIDKNKKEEKSVPSKKKGKAVETKVEPV 178
AEE S Q PK MR++ ES KSKKT+ASMI D K EK V ++ +++
Sbjct: 116 AAEEASAKQVKAPKTMRSYNESQKSKKTVASMIQDDKKPVEKRVNIQEAPPPSKSQPSSP 175
Query: 179 TPPSPVQNGDAGIEEDIIMINRQKLAMKMG-SPKNKTKPKTPKANAKEGKKPRIWELSGD 237
SP+ + IIM R+KL K+ + K K GKKPR+W+L G+
Sbjct: 176 PTGSPM--------DKIIMEKRRKLREKLTPTKKTSPSDSKSSKPEKAGKKPRVWDLGGN 227
Query: 238 QRDLSTLEYTKDKPSDSNALNITPDTHLVGKMVGGIKDLEVESSSEEESSDDEEDVRAET 297
+D + L+ ++D P D NI ++ LVG M G I+DL+VES E ++ D + AE
Sbjct: 228 SKDAALLDRSRDSPDDVQYQNI--NSELVGTMQGVIRDLDVESEDEADNEDASSEGEAEE 285
Query: 298 SHVSAKKANGKANKGMFSLFRGLVGSKNLTKSDMKPILEKMKDHLIAKNVAADIAVKLCD 357
S K G G+ S F+G+VG+K ++ +D++P LEKM+DHLI+KNVA++IA KLCD
Sbjct: 286 QVQSKKGKRG----GLLSYFKGIVGAKTMSLADLQPALEKMRDHLISKNVASEIAAKLCD 341
Query: 358 SVALKLEGKVLGTFESVANTVKSTLTDALVQILSPKRRVDILRDALEAKKQGRPFVMAFC 417
SVA L+GK +GTF+S+A+ VK LT++LV+ILSPKRR+DI+RDALE+K+ GRP+ + FC
Sbjct: 342 SVAASLDGKQMGTFDSIASQVKEALTESLVRILSPKRRIDIIRDALESKRNGRPYTIIFC 401
Query: 418 GVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHPAAKHGGR 477
GVNGVGKSTNLAKICFWLIEN+ NVLIAACDTFRAGAVEQLRTH RHL +LHPAAKH GR
Sbjct: 402 GVNGVGKSTNLAKICFWLIENDFNVLIAACDTFRAGAVEQLRTHTRHLNALHPAAKHDGR 461
Query: 478 EMVQLFEKGYGKDPAEIAFRAISHARDMHIDVVLIDTAGRMQDNEPLMRALAKLVKVNQP 537
MVQL+EKGYGKD A IA AI A D +DVVL+DTAGRMQDNEPLMR+L+KL+KVN P
Sbjct: 462 NMVQLYEKGYGKDAAGIAMEAIKFAHDTRVDVVLVDTAGRMQDNEPLMRSLSKLIKVNNP 521
Query: 538 DLLLFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTIDDKVGAAISMT 597
DL+LFVGEALVGNEAVDQLVKFN ++AD+S ++NPH+IDGIVLTKFDTIDDKVGAAISMT
Sbjct: 522 DLVLFVGEALVGNEAVDQLVKFNQSLADYSSNENPHIIDGIVLTKFDTIDDKVGAAISMT 581
Query: 598 YITGQPIVFVGTGQTYTDLKSLNAKAVVNALMK 630
YITGQPIVFVGTGQTY DLK++N AVVN+LMK
Sbjct: 582 YITGQPIVFVGTGQTYADLKAINVNAVVNSLMK 614
>sp|P08240|SRPR_HUMAN Signal recognition particle receptor subunit alpha OS=Homo sapiens
GN=SRPR PE=1 SV=2
Length = 638
Score = 704 bits (1817), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 377/663 (56%), Positives = 462/663 (69%), Gaps = 59/663 (8%)
Query: 1 MLDFFTIFSKGGIVLWYFQSASQIFTPSLNALIKSVILQERGGNQVFEHNGLVLKHKLDN 60
MLDFFTIFSKGG+VLW FQ S T +NALI+SV+LQERGGN F H L LK+KLDN
Sbjct: 1 MLDFFTIFSKGGLVLWCFQGVSDSCTGPVNALIRSVLLQERGGNNSFTHEALTLKYKLDN 60
Query: 61 EFDLVFVVGFQKILQLSYVDKLLDDVHLEFRDKYKNELGSDMHLY----DYDFESTYNVL 116
+F+LVFVVGFQKIL L+YVDKL+DDVH FRDKY+ E+ L +DF++ + L
Sbjct: 61 QFELVFVVGFQKILTLTYVDKLIDDVHRLFRDKYRTEIQQQSALSLLNGTFDFQNDFLRL 120
Query: 117 LKEAEEWSKVQACIPKQMRTFEESSKSKKTIASMIIDKNKK------------------- 157
L+EAEE SK++A P M+ FE+S K+KK + SMI + +K
Sbjct: 121 LREAEESSKIRA--PTTMKKFEDSEKAKKPVRSMIETRGEKPKEKAKNSKKKGAKKEGSD 178
Query: 158 ----EEKSVPSKKKGKAVETKVEPVTPPSPVQNGDAGIEEDIIMINRQKLAMKMGSPKNK 213
K VP++K G PV P +NG +E++I R++ K G K
Sbjct: 179 GPLATSKPVPAEKSGL-------PVGP----ENGVELSKEELIRRKREEFIQKHGRGMEK 227
Query: 214 ----TKPKTPKANAKEGKKPRIWELSGDQRDLSTLEYTKDKPSDSNALNITPDTHLV-GK 268
TK PK K K PR+WEL G + L+Y+ + + ++ D +L+ G
Sbjct: 228 SNKSTKSDAPKEKGK--KAPRVWELGGCA-NKEVLDYSTPTTNGTPEAALSEDINLIRGT 284
Query: 269 MVGG-IKDLEVESSSEEESSDDEEDVRAETSHVSAKKANGKANKGMFSLFRGLVGSKNLT 327
GG ++DL+ SS DDE + T + K G GMF + +GLVGSK+L+
Sbjct: 285 GSGGQLQDLDCSSS------DDEGAAQNSTKPSATKGTLG----GMFGMLKGLVGSKSLS 334
Query: 328 KSDMKPILEKMKDHLIAKNVAADIAVKLCDSVALKLEGKVLGTFESVANTVKSTLTDALV 387
+ DM+ +L+KM+DHLIAKNVAADIAV+LC+SVA KLEGKV+GTF +V +TVK L ++LV
Sbjct: 335 REDMESVLDKMRDHLIAKNVAADIAVQLCESVANKLEGKVMGTFSTVTSTVKQALQESLV 394
Query: 388 QILSPKRRVDILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAAC 447
QIL P+RRVD+LRD ++A+++ RP+V+ FCGVNGVGKSTNLAKI FWL+EN +VLIAAC
Sbjct: 395 QILQPQRRVDMLRDIMDAQRRQRPYVVTFCGVNGVGKSTNLAKISFWLLENGFSVLIAAC 454
Query: 448 DTFRAGAVEQLRTHVRHLCSLHPAAKHGGREMVQLFEKGYGKDPAEIAFRAISHARDMHI 507
DTFRAGAVEQLRTH R L +LHP KHGGR MVQLFEKGYGKD A IA AI+ AR+
Sbjct: 455 DTFRAGAVEQLRTHTRRLSALHPPEKHGGRTMVQLFEKGYGKDAAGIAMEAIAFARNQGF 514
Query: 508 DVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQLVKFNNAMADHS 567
DVVL+DTAGRMQDN PLM ALAKL+ VN PDL+LFVGEALVGNEAVDQLVKFN A+ADHS
Sbjct: 515 DVVLVDTAGRMQDNAPLMTALAKLITVNTPDLVLFVGEALVGNEAVDQLVKFNRALADHS 574
Query: 568 LSDNPHLIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGTGQTYTDLKSLNAKAVVNA 627
++ P LIDGIVLTKFDTIDDKVGAAISMTYIT +PIVFVGTGQTY DL+SLNAKAVV A
Sbjct: 575 MAQTPRLIDGIVLTKFDTIDDKVGAAISMTYITSKPIVFVGTGQTYCDLRSLNAKAVVAA 634
Query: 628 LMK 630
LMK
Sbjct: 635 LMK 637
>sp|Q3MHE8|SRPR_BOVIN Signal recognition particle receptor subunit alpha OS=Bos taurus
GN=SRPR PE=2 SV=1
Length = 639
Score = 694 bits (1790), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 376/664 (56%), Positives = 460/664 (69%), Gaps = 60/664 (9%)
Query: 1 MLDFFTIFSKGGIVLWYFQSASQIFTPSLNALIKSVILQERGGNQVFEHNGLVLKHKLDN 60
MLDFFTIFSKGG+VLW FQ S T +NALI+SV+LQERGGN F H L LK+KLDN
Sbjct: 1 MLDFFTIFSKGGLVLWCFQGVSDSCTGPVNALIRSVLLQERGGNNSFTHEALTLKYKLDN 60
Query: 61 EFDLVFVVGFQKILQLSYVDKLLDDVHLEFRDKYKNELGSDMHLY----DYDFESTYNVL 116
+F+LVFVVGFQKIL L+YVDKL+DDVH FRDKY+ E+ L +DF++ + L
Sbjct: 61 QFELVFVVGFQKILTLTYVDKLIDDVHRLFRDKYRTEIQQQSALSLLNGTFDFQNDFLRL 120
Query: 117 LKEAEEWSKVQACIPKQMRTFEESSKSKKTIASMIIDKNKK------------------- 157
L+EAEE SK++A P M+ FE+S K+KK + SMI + +K
Sbjct: 121 LREAEESSKIRA--PTTMKKFEDSEKAKKPVRSMIETRGEKPKEKAKNNKKNKGAKKEGS 178
Query: 158 -----EEKSVPSKKKGKAVETKVEPVTPPSPVQNGDAGIEEDIIMINRQKLAMKMGSPKN 212
K+ P++K G PV P +NG+ +E+ I R++ K G
Sbjct: 179 DGPLATSKAAPAEKSGL-------PVGP----ENGEELSKEEQIRRKREEFIQKHGRGME 227
Query: 213 KTKPKTPKANAKE-GKK-PRIWELSGDQRDLSTLEYTKDKPSDSNALNITP--DTHLVGK 268
K+ + KE GKK PR+W L G + L+Y+ P+ + A P D +L+
Sbjct: 228 KSSKSSKSDAPKEKGKKAPRVWALGGSA-NKEVLDYST--PTTNGAPEAAPPEDINLIRG 284
Query: 269 MVGG--IKDLEVESSSEEESSDDEEDVRAETSHVSAKKANGKANKGMFSLFRGLVGSKNL 326
G ++DL+ SS DDE + T + K G GMF + +GLVGSK+L
Sbjct: 285 TGPGRQLQDLDCSSS------DDEGAAQNSTKPSATKGTLG----GMFGMLKGLVGSKSL 334
Query: 327 TKSDMKPILEKMKDHLIAKNVAADIAVKLCDSVALKLEGKVLGTFESVANTVKSTLTDAL 386
T+ DM+ +L+KM+DHLIAKNVAADIAV+LC+SVA KLEGKV+GTF +V +TVK L ++L
Sbjct: 335 TREDMESVLDKMRDHLIAKNVAADIAVQLCESVANKLEGKVMGTFSTVTSTVKQALQESL 394
Query: 387 VQILSPKRRVDILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAA 446
VQIL P+RRVD+LRD ++A++ RP+V+ FCGVNGVGKSTNLAKI FWL+EN +VLIAA
Sbjct: 395 VQILQPQRRVDMLRDIMDAQRHQRPYVVTFCGVNGVGKSTNLAKISFWLLENGFSVLIAA 454
Query: 447 CDTFRAGAVEQLRTHVRHLCSLHPAAKHGGREMVQLFEKGYGKDPAEIAFRAISHARDMH 506
CDTFRAGAVEQLRTH R L +LHP KHGGR MVQLFEKGYGKD A IA AI+ AR+
Sbjct: 455 CDTFRAGAVEQLRTHTRRLSALHPPEKHGGRTMVQLFEKGYGKDAAGIAMEAIAFARNQG 514
Query: 507 IDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQLVKFNNAMADH 566
DVVL+DTAGRMQDN PLM ALAKL+ VN PDL+LFVGEALVGNEAVDQLVKFN A+ADH
Sbjct: 515 FDVVLVDTAGRMQDNAPLMTALAKLITVNTPDLVLFVGEALVGNEAVDQLVKFNRALADH 574
Query: 567 SLSDNPHLIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGTGQTYTDLKSLNAKAVVN 626
S++ P LIDGIVLTKFDTIDDKVGAAISMTYIT +PIVFVGTGQTY DL+SLNAKAVV
Sbjct: 575 SMAQTPRLIDGIVLTKFDTIDDKVGAAISMTYITSKPIVFVGTGQTYCDLRSLNAKAVVA 634
Query: 627 ALMK 630
ALMK
Sbjct: 635 ALMK 638
>sp|P06625|SRPR_CANFA Signal recognition particle receptor subunit alpha OS=Canis
familiaris GN=SRPR PE=2 SV=2
Length = 638
Score = 691 bits (1783), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 374/656 (57%), Positives = 459/656 (69%), Gaps = 45/656 (6%)
Query: 1 MLDFFTIFSKGGIVLWYFQSASQIFTPSLNALIKSVILQERGGNQVFEHNGLVLKHKLDN 60
MLDFFTIFSKGG+VLW FQ S T +NALI+SV+LQERGGN F H L LK+KLDN
Sbjct: 1 MLDFFTIFSKGGLVLWCFQGVSDSCTGPVNALIRSVLLQERGGNNSFTHEALTLKYKLDN 60
Query: 61 EFDLVFVVGFQKILQLSYVDKLLDDVHLEFRDKYKNELGSDMHLY----DYDFESTYNVL 116
+F+LVFVVGFQKIL L+YVDKL+DDVH FRDKY+ E+ L +DF++ + L
Sbjct: 61 QFELVFVVGFQKILTLTYVDKLIDDVHRLFRDKYRTEIQQQSALSLLNGTFDFQNDFLRL 120
Query: 117 LKEAEEWSKVQACIPKQMRTFEESSKSKKTIASMIIDKNKK--------------EEKSV 162
L+E EE SK++A P M+ FE+S K+KK + SMI + +K +E S
Sbjct: 121 LREREESSKIRA--PTTMKKFEDSEKAKKPVRSMIETRGEKPKEKAKNSKKKGAKKESSD 178
Query: 163 PSKKKGKAVETKVEPVTPPSPVQNGDAGIEEDIIMINRQKLAMKMGSPKNK----TKPKT 218
GKAV E P+ +NG +E++I R++ K G K TK
Sbjct: 179 GPLATGKAV--PAEKSGLPAGPENGVELSKEELIRRKREEFIQKHGRGLEKSSKSTKSDA 236
Query: 219 PKANAKEGKKPRIWELSGDQRDLSTLEYTKDKPSDSNALNITP--DTHLV-GKMVGG-IK 274
PK K K PR+W L G + L+Y+ P+ + A + P D +L+ G GG ++
Sbjct: 237 PKEKGK--KAPRVWALGGCA-NKEVLDYSA--PTTNGAPDAAPPEDINLIRGTGPGGQLQ 291
Query: 275 DLEVESSSEEESSDDEEDVRAETSHVSAKKANGKANKGMFSLFRGLVGSKNLTKSDMKPI 334
DL+ SS DDEE + + + K G GMF + +GLVGSK+L++ DM+ +
Sbjct: 292 DLDCSSS------DDEETAQNASKPSATKGTLG----GMFGMLKGLVGSKSLSREDMESV 341
Query: 335 LEKMKDHLIAKNVAADIAVKLCDSVALKLEGKVLGTFESVANTVKSTLTDALVQILSPKR 394
L+KM+DHLIAKNVAADIAV+LC+SVA KLEGKV+GTF +V +TVK L ++LVQIL P+R
Sbjct: 342 LDKMRDHLIAKNVAADIAVQLCESVANKLEGKVMGTFSTVTSTVKQALQESLVQILQPQR 401
Query: 395 RVDILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGA 454
RVD+LRD ++A++ RP+V+ FCGVNGVGKSTNLAKI FWL+EN +VLIAACDTFRAGA
Sbjct: 402 RVDMLRDIMDAQRHQRPYVVTFCGVNGVGKSTNLAKISFWLLENGFSVLIAACDTFRAGA 461
Query: 455 VEQLRTHVRHLCSLHPAAKHGGREMVQLFEKGYGKDPAEIAFRAISHARDMHIDVVLIDT 514
VE +RTH R L +LHP KH G MVQLFEKGYGKD A IA AI+ AR+ DVVL+DT
Sbjct: 462 VEHVRTHTRRLSALHPPEKHAGPTMVQLFEKGYGKDAAGIAMEAIAFARNQGFDVVLVDT 521
Query: 515 AGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHL 574
AGRMQDN PLM ALAKL+ VN PDL+LFVGEALVGNEAVDQLVKFN A+ADHS++ P L
Sbjct: 522 AGRMQDNAPLMTALAKLITVNTPDLVLFVGEALVGNEAVDQLVKFNRALADHSMAQTPRL 581
Query: 575 IDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGTGQTYTDLKSLNAKAVVNALMK 630
IDGIVLTKFDTIDDKVGAAISMTYIT +PIVFVGTGQTY DL+SLNAKAVV ALMK
Sbjct: 582 IDGIVLTKFDTIDDKVGAAISMTYITSKPIVFVGTGQTYCDLRSLNAKAVVAALMK 637
>sp|Q54ZR7|SRPR_DICDI Signal recognition particle receptor subunit alpha OS=Dictyostelium
discoideum GN=srpr PE=3 SV=1
Length = 615
Score = 348 bits (892), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 173/320 (54%), Positives = 223/320 (69%), Gaps = 16/320 (5%)
Query: 312 GMFSLFRGLVGSKNLTKSDMKPILEKMKDHLIAKNVAADIAVKLCDSVALKLEGKVLGTF 371
G F L G++ + K D++PIL K HL KNVA D+A K+ S+ LEGK L TF
Sbjct: 309 GFMKYFNVLTGNRVIDKQDLEPILADFKLHLTKKNVAPDVADKIVQSIGTGLEGKKLATF 368
Query: 372 ESVANTVKSTLTDALVQILSPKRRVDILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKI 431
+ V + VK + D + +IL+PKR +DILR+ ++A K RP+ + F GVNGVGKSTNLAK+
Sbjct: 369 QGVTSVVKQQMEDTITRILTPKRNIDILRE-VQAVKGKRPYSIVFSGVNGVGKSTNLAKV 427
Query: 432 CFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHPAAKHGGREMVQLFEKGYGKDP 491
C+WL N ++AACDTFR+GA+EQL+TH L V LFE+GY KD
Sbjct: 428 CYWLTANGYKCMLAACDTFRSGAIEQLKTHADRLN-------------VHLFERGYSKDA 474
Query: 492 AEIAFRAISHARDMHIDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNE 551
A +A AI+ A+D DVVLIDT GRMQ+NEPLM+AL+KLV N DL+LFVGEALVGN+
Sbjct: 475 ASVAQDAIAFAKDTGYDVVLIDTTGRMQNNEPLMKALSKLVNQNNVDLVLFVGEALVGND 534
Query: 552 AVDQLVKFNNAMADHSLSDNPHL--IDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGT 609
VDQL KF+ +++ + + H+ IDGI+LTKFDTIDDKVGAAISM Y TG PI+F+GT
Sbjct: 535 GVDQLTKFDKSLSLLANTTQTHIRTIDGIILTKFDTIDDKVGAAISMVYSTGHPILFLGT 594
Query: 610 GQTYTDLKSLNAKAVVNALM 629
GQ YTDLK +N K+VV +L+
Sbjct: 595 GQNYTDLKRMNIKSVVKSLL 614
>sp|O43032|SRPR_SCHPO Signal recognition particle receptor subunit alpha homolog
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=srp101 PE=3 SV=1
Length = 547
Score = 272 bits (695), Expect = 8e-72, Method: Compositional matrix adjust.
Identities = 179/533 (33%), Positives = 281/533 (52%), Gaps = 52/533 (9%)
Query: 113 YNVLLKEAEEWSKVQACIPKQMRTFEESSKSKKTIASMIID--KNKKEEKSVPSK----- 165
Y + +EA ++S V + + ++ S + ++ ++ K K E++ VP++
Sbjct: 52 YTMQYQEATQYSIVFVVVFQDLKCMAYSQSLLNSAHNIFLNLFKEKLEDRQVPNEAEVEK 111
Query: 166 -------KKGKAVETKVEPVTPPSPVQNGDAGIEEDIIMINRQKLAMKMGSPKNKTKPKT 218
+K +E + + + P N ++ ++ N ++ K K PK
Sbjct: 112 LFAPIFNRKSAQLENETDTKSLPVEANNDNSARKK-----NEYEMKKKGAQSKQTNAPKK 166
Query: 219 PKANAKEGKKPRIWELSGDQRDLSTLEYTKDKPSDSNALNITPDTHLVGKMVGGIKDLEV 278
K K+ R W+ + + + L Y+ S S T D + +VG +
Sbjct: 167 GK------KQLRKWDDQITEEEQAALNYSSQASSAS----QTVDNSQLSSIVGNNNKFQK 216
Query: 279 ESSSEEESSDDEEDVRAETSHVSAKKANGKANKGMFSLFRGLVGSKNLTKSDMKPILEKM 338
S + SD E D S+ K+ FSLF L+G K L + D+ PIL++M
Sbjct: 217 TGSGDVIISDLEMDPNQTISN--------KSASSAFSLFSNLIGGKYLKEEDLSPILKQM 268
Query: 339 KDHLIAKNVAADIAVKLCDSVALKLEGKVLGTFESVANTVKSTLTDALVQILSPKRRVDI 398
++HL KNVA IA++LC+SV L K +G+F++V NTV D L QIL+P +D+
Sbjct: 269 QEHLTKKNVANSIALELCESVKASLINKKVGSFDTVKNTVNKAFRDRLTQILTPSTSLDL 328
Query: 399 LRDALEAKK-QGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQ 457
L +K + RP+ ++ GVNGVGKST LAKI +WL+ NN +L+AACDTFR+GA+EQ
Sbjct: 329 LHSIRSVRKNENRPYTISLIGVNGVGKSTTLAKIAYWLLSNNFRILVAACDTFRSGAIEQ 388
Query: 458 LRTHVRHLCSLHPAAKHGGREMVQLFEKGYGKDPAEIAFRAISHARDMHIDVVLIDTAGR 517
L HV++L SL ++ ++LF +GYGKD + + A+ +A+ DV+LIDTAGR
Sbjct: 389 LGVHVKNLQSLKGSS-------IELFAQGYGKDSSFVVKNAVEYAKQNSFDVILIDTAGR 441
Query: 518 MQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDG 577
+++ LM +L K K + D + V EALVG +++ Q F SL P +DG
Sbjct: 442 RHNDQRLMGSLEKFTKATKLDKIFQVAEALVGTDSLAQAKHF-----QASLYHRP--LDG 494
Query: 578 IVLTKFDTIDDKVGAAISMTYITGQPIVFVGTGQTYTDLKSLNAKAVVNALMK 630
+++K DT+ VG + M Y PI+FVG GQTY+DL++L+ VV+ LMK
Sbjct: 495 FIISKVDTVGQLVGVMVGMVYAVRVPIIFVGIGQTYSDLRTLSVDWVVDQLMK 547
Score = 51.2 bits (121), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 51/99 (51%), Gaps = 2/99 (2%)
Query: 1 MLDFFTIFSKGGIVLWYFQSASQIFTPSLNALIKSVILQE-RGGNQVFEHNGLVLKHKLD 59
M+D F I +KGGIVLW ++ S + L L L E R N + ++++
Sbjct: 1 MIDLFAIVNKGGIVLWK-KTNSLVNLKCLQVLFHEAFLSEQRTVNNTVTFDRYTMQYQEA 59
Query: 60 NEFDLVFVVGFQKILQLSYVDKLLDDVHLEFRDKYKNEL 98
++ +VFVV FQ + ++Y LL+ H F + +K +L
Sbjct: 60 TQYSIVFVVVFQDLKCMAYSQSLLNSAHNIFLNLFKEKL 98
>sp|P32916|SRPR_YEAST Signal recognition particle receptor subunit alpha homolog
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=SRP101 PE=1 SV=2
Length = 621
Score = 265 bits (677), Expect = 7e-70, Method: Compositional matrix adjust.
Identities = 146/344 (42%), Positives = 209/344 (60%), Gaps = 25/344 (7%)
Query: 304 KANGKANKGMFSLFRGLVGSKNLTKSDMKPILEKMKDHLIAKNVAADIAVKLCDSVALKL 363
K +G + L + ++G+K + +SD+K +LEK+ LI KNVA + A L V+ L
Sbjct: 284 KNSGYVSTAFGFLQKHVLGNKTINESDLKSVLEKLTQQLITKNVAPEAADYLTQQVSHDL 343
Query: 364 EGKVLGTFESVANTVKSTLTDALVQILSPKRRVDILRDALEAKKQGR-------PFVMAF 416
G + SV NT + +LT AL QIL+P VD+LR+ +++K+ + P+V +
Sbjct: 344 VGSKTANWTSVENTARESLTKALTQILTPGVSVDLLRE-IQSKRSKKDEEGKCDPYVFSI 402
Query: 417 CGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHPAA---- 472
GVNGVGKSTNL+K+ FWL++NN VLI ACDTFR+GAVEQLR HV +L L +
Sbjct: 403 VGVNGVGKSTNLSKLAFWLLQNNFKVLIVACDTFRSGAVEQLRVHVENLAQLMDDSHVRG 462
Query: 473 ---KHG--GREMVQLFEKGYGKDP--AEIAFRAISHARDMHIDVVLIDTAGRMQDNEPLM 525
K G G + V+LFE GYG +IA +AI ++RD + D+VL+DTAGR ++ LM
Sbjct: 463 SKNKRGKTGNDYVELFEAGYGGSDLVTKIAKQAIKYSRDQNFDIVLMDTAGRRHNDPTLM 522
Query: 526 RALAKLVKVNQPDLLLFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDT 585
L +PD ++ VGEALVG ++V Q FN+A +D +++K DT
Sbjct: 523 SPLKSFADQAKPDKIIMVGEALVGTDSVQQAKNFNDAFG------KGRNLDFFIISKCDT 576
Query: 586 IDDKVGAAISMTYITGQPIVFVGTGQTYTDLKSLNAKAVVNALM 629
+ + +G ++M Y TG PI+FVG GQTYTDL++L+ K VN LM
Sbjct: 577 VGEMLGTMVNMVYATGIPILFVGVGQTYTDLRTLSVKWAVNTLM 620
>sp|P27414|FTSY_SULAC Signal recognition particle receptor FtsY OS=Sulfolobus
acidocaldarius (strain ATCC 33909 / DSM 639 / JCM 8929 /
NBRC 15157 / NCIMB 11770) GN=ftsY PE=3 SV=1
Length = 369
Score = 189 bits (479), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 112/323 (34%), Positives = 180/323 (55%), Gaps = 29/323 (8%)
Query: 294 RAETSHVSAKKANGKANKGMFSLFRGLVGSKNLTKSDMKPILEKMKDHLIAKNVAADIAV 353
+ E V + N + NK F F + K + + D+ ++E+++ L+ +V+ ++
Sbjct: 61 KQEKISVQTGQENKQENKRSFFDF---LKYKTIKEDDLNDVIEELRFQLLDSDVSYEVTE 117
Query: 354 KLCDSVALKLEGKVLGTFESVANTVKSTLTDALVQILSPKRRVDILRDALEAKKQGRPFV 413
K+ + + L GK + E V V +TL ++ +IL+ ++ D++ + K +PFV
Sbjct: 118 KILEDLKNNLIGKKVSRREEVEEIVINTLKKSITEILTKNQKTDLIEKIRSSGK--KPFV 175
Query: 414 MAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHPAAK 473
+ F GVNGVGK+T +AK+ L +NNL+ +IAA DTFRA A EQL A
Sbjct: 176 IIFFGVNGVGKTTTIAKVVNMLKKNNLSTIIAASDTFRAAAQEQL-------------AY 222
Query: 474 HGGREMVQLFEKGYGKDPAEIAFRAISHARDMHIDVVLIDTAGRMQDNEPLMRALAKLVK 533
H + VQL YG DPA +AF AIS A+ +IDVVLIDTAGRM + L+ L ++++
Sbjct: 223 HASKLEVQLIRGKYGADPASVAFDAISFAKSRNIDVVLIDTAGRMHIDSDLVEELKRVLR 282
Query: 534 VNQPDLLLFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTIDDKVGAA 593
+ +PD + + ++L G++A++Q F N + D ++LTK D D K G A
Sbjct: 283 IAKPDFRILILDSLAGSDALEQARHFENNVG----------YDAVILTKVDA-DAKGGIA 331
Query: 594 ISMTYITGQPIVFVGTGQTYTDL 616
+S+ Y +P+V++G GQ Y DL
Sbjct: 332 LSLAYELKKPVVYMGVGQNYDDL 354
>sp|Q57739|FTSY_METJA Signal recognition particle receptor FtsY OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=ftsY PE=3 SV=1
Length = 409
Score = 184 bits (467), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 108/284 (38%), Positives = 168/284 (59%), Gaps = 25/284 (8%)
Query: 346 NVAADIAVKLCDSVALKLEGKVLGTFESVANTVKSTLTDALVQILSPKRRVDILRDALEA 405
+VA ++ KL +++ +L G+ + ++V + + +A+ ILS + ++DI +
Sbjct: 138 DVALEVVEKLIENIKNELVGRKISPDDNVEEITINAVKNAIKNILS-QEKIDIEEIIKKN 196
Query: 406 KKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHL 465
K +G+P V+ F G+NG GK+T +AK+ + L + +V++AA DTFRAGA+EQL H +++
Sbjct: 197 KAEGKPTVIVFVGINGTGKTTTIAKLAYKLKQKGYSVVLAAGDTFRAGAIEQLEQHAKNV 256
Query: 466 CSLHPAAKHGGREMVQLFEKGYGKDPAEIAFRAISHARDMHIDVVLIDTAGRMQDNEPLM 525
V++ + G D A + + AI HA+ IDVVL DTAGR N LM
Sbjct: 257 G-------------VKVIKHKPGADSAAVIYDAIQHAKARGIDVVLADTAGRQATNVNLM 303
Query: 526 RALAKLVKVNQPDLLLFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDT 585
+ K+V+V +PDL++FVG+AL GN+AV Q +FN A+ IDGI+LTK D
Sbjct: 304 EEIKKVVRVTKPDLVIFVGDALTGNDAVYQAEEFNRAVN----------IDGIILTKVDA 353
Query: 586 IDDKVGAAISMTYITGQPIVFVGTGQTYTDLKSLNAKAVVNALM 629
D K GAA+S+ Y G+PI+++G GQ Y DL +A +V L
Sbjct: 354 -DAKGGAALSIGYAIGKPILYLGVGQRYQDLIEFDADWMVRKLF 396
>sp|Q8TIN7|FTSY_METAC Signal recognition particle receptor FtsY OS=Methanosarcina
acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 /
C2A) GN=ftsY PE=3 SV=1
Length = 417
Score = 174 bits (441), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 105/304 (34%), Positives = 170/304 (55%), Gaps = 28/304 (9%)
Query: 326 LTKSDMKPILEKMKDHLIAKNVAADIAVKLCDSVALKLEGKVLGTFESVANTVKSTLTDA 385
L D++ L +++ L+ ++A ++ + +SV +L G + V++ L A
Sbjct: 140 LDNKDLEEPLWELEMGLLESDLALSVSEAIVESVKNQLTGTTKRIGSNTGEIVEAALKKA 199
Query: 386 LVQILSPKRRVDILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIA 445
+++++S + K + +P + F G+NG GK+T+++KI L+++ +V++A
Sbjct: 200 ILEVVS----ANTFDFDEYVKNREKPVHIVFVGINGTGKTTSISKITNRLLKSGYSVVLA 255
Query: 446 ACDTFRAGAVEQLRTHVRHLCSLHPAAKHGGREMVQLFEKGYGKDPAEIAFRAISHARDM 505
A DTFRAGA++QL H L V++ + G DPA + + A+ +A+
Sbjct: 256 AGDTFRAGAIDQLGIHANRLG-------------VKMIKHQAGADPAAVIYDAVQYAKAH 302
Query: 506 HIDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQLVKFNNAMAD 565
ID VL DTAGRM N LM + K+ +V+ PDL++FV EA+ GN+AV++ +FN A+
Sbjct: 303 KIDFVLSDTAGRMHTNMNLMAQMEKICRVSTPDLIIFVDEAVAGNDAVERAAQFNEAVP- 361
Query: 566 HSLSDNPHLIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGTGQTYTDLKSLNAKAVV 625
IDG +LTK D D K GAAIS+ YITG+PI+F G GQ Y DLK + + V
Sbjct: 362 ---------IDGSILTKIDA-DAKGGAAISIAYITGKPILFFGIGQGYEDLKKFDPEWFV 411
Query: 626 NALM 629
+ L
Sbjct: 412 DQLF 415
>sp|D4GYW6|FTSY_HALVD Signal recognition particle receptor FtsY OS=Haloferax volcanii
(strain ATCC 29605 / DSM 3757 / JCM 8879 / NBRC 14742 /
NCIMB 2012 / VKM B-1768 / DS2) GN=ftsY PE=3 SV=1
Length = 456
Score = 169 bits (428), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 104/304 (34%), Positives = 165/304 (54%), Gaps = 28/304 (9%)
Query: 326 LTKSDMKPILEKMKDHLIAKNVAADIAVKLCDSVALKLEGKVLGTFESVANTVKSTLTDA 385
+ + D++ L +++ L+ +V +A ++ +++ KL G+ ES V L DA
Sbjct: 177 IEEEDLEDPLWELEMALLQSDVEMQVAEEILETIREKLIGETRKQVESTGQLVSEALHDA 236
Query: 386 LVQILSPKRRVDILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIA 445
L +++S + D + EA K P + F G+NGVGK+T +AK+ + + + ++A
Sbjct: 237 LYEVISVGQ-FDFDQRIAEADK---PVTLIFTGINGVGKTTTIAKLAKYFEKQGYSTVLA 292
Query: 446 ACDTFRAGAVEQLRTHVRHLCSLHPAAKHGGREMVQLFEKGYGKDPAEIAFRAISHARDM 505
DT+RAGA EQ+R H L A + GG DPA + + + +A
Sbjct: 293 NGDTYRAGANEQIREHAEALDKKLIAHEQGG-------------DPAAVIYDGVEYAEAH 339
Query: 506 HIDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQLVKFNNAMAD 565
ID+VL DTAGR+ + LM L K+ +V PDL LFV EA+ G +AV++ +FN+A A
Sbjct: 340 DIDIVLGDTAGRLHTSNDLMAQLEKIDRVVGPDLTLFVDEAVAGQDAVERARQFNDAAA- 398
Query: 566 HSLSDNPHLIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGTGQTYTDLKSLNAKAVV 625
IDG +LTK D D GAAIS+ Y+TG+PI+F+G GQ Y ++ + + +V
Sbjct: 399 ---------IDGAILTKADA-DSNGGAAISIAYVTGKPILFLGVGQGYDHIEKFDPEQMV 448
Query: 626 NALM 629
L+
Sbjct: 449 ERLL 452
>sp|Q9HJ93|FTSY_THEAC Signal recognition particle receptor FtsY OS=Thermoplasma
acidophilum (strain ATCC 25905 / DSM 1728 / JCM 9062 /
NBRC 15155 / AMRC-C165) GN=ftsY PE=3 SV=1
Length = 288
Score = 146 bits (369), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 93/294 (31%), Positives = 159/294 (54%), Gaps = 34/294 (11%)
Query: 336 EKMKDHLIAKNVAADIAVKLCDSVALKLEGKVLGTFESVANTVKSTLTDALVQILSPKRR 395
+++ D + K V AD++++ + +A + K+ E L+ ++++++ P+ +
Sbjct: 21 DEVADEIPLKLVEADVSLEAAEDLASLVRNKLK---EDTTLDPNEVLSSSILEMM-PEYK 76
Query: 396 VDILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAV 455
D+L +PFV+ F G+NG GK+T + K +L N +V+IAA DTFRAGA+
Sbjct: 77 FDVL------NVNKKPFVVLFLGINGTGKTTTIGKFAHYLKRNGKSVVIAAADTFRAGAI 130
Query: 456 EQLRTHVRHLCSLHPAAKHGGREMVQLFEKGYGKDPAEIAFRAISHARDMHIDVVLIDTA 515
EQ+ + G E+++ G DP+ +AF AI HAR +ID VLIDTA
Sbjct: 131 EQISL----------IGREAGTEVIR---HDRGSDPSSVAFDAIEHARARNIDYVLIDTA 177
Query: 516 GRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLI 575
GRM N+ L+ + K+ +V++PDL L V +A+ G ++V+Q F +
Sbjct: 178 GRMNTNKNLLDEMKKIKRVSKPDLTLLVIDAVSGQDSVNQARMFEENVG----------Y 227
Query: 576 DGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGTGQTYTDLKSLNAKAVVNALM 629
DG+++TK DT D + G+ +S+ + +P++FV TGQ D+ + V L+
Sbjct: 228 DGVIVTKLDT-DARGGSILSIYHDLKKPVLFVCTGQGLDDIMPFDRNWYVRKLI 280
>sp|P74214|SRP54_SYNY3 Signal recognition particle protein OS=Synechocystis sp. (strain
PCC 6803 / Kazusa) GN=ffh PE=3 SV=1
Length = 482
Score = 120 bits (302), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 88/311 (28%), Positives = 155/311 (49%), Gaps = 51/311 (16%)
Query: 317 FRGLVGSKNLTKSDMKPILEKMKDHLIAKNVAADIAVKLCDSVALKLEGKVLGTFESVAN 376
++ L G +++S++K L++++ L+A AD+ +++ +E K LG
Sbjct: 13 WKKLRGQDKISESNIKEALQEVRRALLA----ADVNLQVVKGFIKDVEQKALGA------ 62
Query: 377 TVKSTLTDALVQILSPKRRVDILRDALE----------AKKQGRPFVMAFCGVNGVGKST 426
D + + ++ + I+ D L A+ + P V+ G+ G GK+T
Sbjct: 63 -------DVISGVNPGQQFIKIVYDELVNLMGESNVPLAQAEQAPTVILMAGLQGTGKTT 115
Query: 427 NLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHPAAKHGGREMVQLFEKG 486
AK+ +L + + L+ A D +R A++QL+T + + V +F+ G
Sbjct: 116 ATAKLALYLRKQKRSALMVATDVYRPAAIDQLKTLGQQID-------------VPVFDLG 162
Query: 487 YGKDPAEIAFRAISHARDMHIDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEA 546
+P EIA + + A+++ +D VLIDTAGR+Q + +M LA++ +V +PD L V +A
Sbjct: 163 SDANPVEIARQGVEKAKELGVDTVLIDTAGRLQIDPQMMAELAEIKQVVKPDDTLLVVDA 222
Query: 547 LVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTIDDKVGAAISMTYITGQPIVF 606
+ G EA + F+ + I G +LTK D D + GAA+S+ I+GQPI F
Sbjct: 223 MTGQEAANLTHTFHEQIG----------ITGAILTKLDG-DTRGGAALSVRQISGQPIKF 271
Query: 607 VGTGQTYTDLK 617
VG G+ L+
Sbjct: 272 VGVGEKVEALQ 282
>sp|Q54431|SRP54_STRMU Signal recognition particle protein OS=Streptococcus mutans
serotype c (strain ATCC 700610 / UA159) GN=ffh PE=3 SV=3
Length = 516
Score = 117 bits (292), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 84/308 (27%), Positives = 156/308 (50%), Gaps = 36/308 (11%)
Query: 316 LFRGLVGSKNLTKSDMKPILEKMKDHLIAKNVAADIAVKLCDSVALKLEG-KVLGTFESV 374
+F+ L G + L++ D++ + ++++ L+ +VA + + V + G +V+ T +
Sbjct: 13 VFKNLRGKRKLSEKDVQEVTKEIRLALLEADVALPVVKEFIKRVRKRAVGHEVIDTLDPS 72
Query: 375 ANTVKSTLTDALVQILSPKRRVDILRDALEAKKQGR-PFVMAFCGVNGVGKSTNLAKICF 433
+K + + L +L + E +K + P ++ G+ G GK+T K+
Sbjct: 73 QQIIK-IVNEELTAVLGS--------ETAEIEKSSKIPTIIMMVGLQGAGKTTFAGKLAN 123
Query: 434 WLI-ENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHPAAKHGGREMVQLFEKGYGKDPA 492
L+ E N L+ A D +R A++QL+T + + V +F+ G
Sbjct: 124 KLVKEENARPLMIAADIYRPAAIDQLKTLGQQIN-------------VPVFDMGTEHSAV 170
Query: 493 EIAFRAISHARDMHIDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEA 552
EI + ++ A++ D VLIDTAGR+Q +E LM L + + P+ +L V ++++G EA
Sbjct: 171 EIVSQGLAQAKENRNDYVLIDTAGRLQIDEKLMTELRDIKALANPNEILLVVDSMIGQEA 230
Query: 553 VDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGTGQT 612
+ +FN + + G++LTK D D + GAA+S+ ITG+PI F GTG+
Sbjct: 231 ANVAREFNQQLE----------VTGVILTKIDG-DTRGGAALSVRQITGKPIKFTGTGEK 279
Query: 613 YTDLKSLN 620
TD+++ +
Sbjct: 280 ITDIETFH 287
>sp|O07347|SRP54_THEAQ Signal recognition particle protein OS=Thermus aquaticus GN=ffh
PE=1 SV=3
Length = 430
Score = 115 bits (289), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 88/292 (30%), Positives = 141/292 (48%), Gaps = 33/292 (11%)
Query: 320 LVGSKNLTKSDMKPILEKMKDHLIAKNVAADIAVKLCDSVALKLEGKVLGTFESVANTVK 379
L G +T+ D+K L +++ L+ +V ++A + V + GK + + A +
Sbjct: 16 LRGRGRITEEDLKATLREIRRALMDADVNLEVARDFVERVREEALGKQVLESLTPAEVIL 75
Query: 380 STLTDALVQILSPKRRVDILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENN 439
+T+ +AL + L + R+ +L+D + G+ G GK+T AK+ +
Sbjct: 76 ATVYEALKEALGGEARLPVLKDR---------NLWFLVGLQGSGKTTTAAKLALYYKGKG 126
Query: 440 LNVLIAACDTFRAGAVEQLRTHVRHLCSLHPAAKHGGREMVQLFEKGYGKDPAEIAFRAI 499
L+ A DT R A EQLR G + V + E G+ P I R
Sbjct: 127 RRPLLVAADTQRPAAREQLRLL-------------GEKVGVPVLEVMDGESPESIRRRVE 173
Query: 500 SHARDMHIDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQLVKF 559
AR D++L+DTAGR+Q +EPLM LA+L +V PD +L V +A+ G EA+ F
Sbjct: 174 EKARLEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEALSVARAF 233
Query: 560 NNAMADHSLSDNPHLIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGTGQ 611
+ + + G+VLTK D D + GAA+S ++TG+PI F G +
Sbjct: 234 DEKVG----------VTGLVLTKLDG-DARGGAALSARHVTGKPIYFAGVSE 274
>sp|O67066|FTSY_AQUAE Signal recognition particle receptor FtsY OS=Aquifex aeolicus
(strain VF5) GN=ftsY PE=3 SV=1
Length = 461
Score = 115 bits (287), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 79/223 (35%), Positives = 109/223 (48%), Gaps = 30/223 (13%)
Query: 413 VMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHPAA 472
V+ F GVNG GK+T + K+ L + VL+ A DTFRA A+EQL A
Sbjct: 262 VLLFVGVNGSGKTTTIGKLAHQLKQKGKKVLLVAGDTFRAAAIEQLEVW----------A 311
Query: 473 KHGGREMVQLFEKGYGKDPAEIAFRAISHARDMHIDVVLIDTAGRMQDNEPLMRALAKLV 532
K G V + +K G DP + + + A++ +VVL+DTAGR+ EPL+ L K+
Sbjct: 312 KRAG---VDIVKKEEGSDPGAVVYEGMKKAKEEGYEVVLVDTAGRLHTKEPLINELRKIK 368
Query: 533 KVNQ------PDLLLFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTI 586
KV Q P L V +A G A+ Q F A+ I GIV+TK D
Sbjct: 369 KVIQKFDKEEPSETLLVIDATTGQNAIQQAKVFKEAVD----------ITGIVVTKLDG- 417
Query: 587 DDKVGAAISMTYITGQPIVFVGTGQTYTDLKSLNAKAVVNALM 629
K GA +++ PI VG G+ DL+ +A A V AL+
Sbjct: 418 SAKGGAVVAICRELKIPIKLVGVGEGIDDLQPFDADAYVEALL 460
>sp|P56005|SRP54_HELPY Signal recognition particle protein OS=Helicobacter pylori (strain
ATCC 700392 / 26695) GN=ffh PE=3 SV=1
Length = 448
Score = 114 bits (285), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 73/222 (32%), Positives = 115/222 (51%), Gaps = 25/222 (11%)
Query: 408 QGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCS 467
Q P V+ G+ G GK+T AK+ +L N VL+ ACD R AVEQL+
Sbjct: 91 QTPPTVVLMAGLQGSGKTTTTAKLAHYLKTKNKKVLLCACDLQRLAAVEQLKVL------ 144
Query: 468 LHPAAKHGGREMVQLFEKGYGKDPAEIAFRAISHARDMHIDVVLIDTAGRMQDNEPLMRA 527
G + V++F + K EIA A+ A++ DV+L+D+AGR+ ++ LM+
Sbjct: 145 -------GEQVGVEVFYE-ENKSVKEIASNALKRAKEAQFDVLLVDSAGRLAIDKELMQE 196
Query: 528 LAKLVKVNQPDLLLFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTID 587
L ++ ++ P +L+V +AL G + V FN + + G+VL+KFD+ D
Sbjct: 197 LKEVKEILNPHEVLYVADALSGQDGVKSANTFNEEIG----------VSGVVLSKFDS-D 245
Query: 588 DKVGAAISMTYITGQPIVFVGTGQTYTDLKSLNAKAVVNALM 629
K G A+ +TY G P+ F+G+G+ DL + +V LM
Sbjct: 246 SKGGIALGITYQLGLPLRFIGSGEKIPDLDVFVPERIVGRLM 287
>sp|Q9ZK62|SRP54_HELPJ Signal recognition particle protein OS=Helicobacter pylori (strain
J99) GN=ffh PE=3 SV=1
Length = 448
Score = 114 bits (285), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 73/222 (32%), Positives = 115/222 (51%), Gaps = 25/222 (11%)
Query: 408 QGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCS 467
Q P V+ G+ G GK+T AK+ +L N VL+ ACD R AVEQL+
Sbjct: 91 QTPPTVVLMAGLQGSGKTTTTAKLAHYLKTKNKKVLLCACDLQRLAAVEQLKVL------ 144
Query: 468 LHPAAKHGGREMVQLFEKGYGKDPAEIAFRAISHARDMHIDVVLIDTAGRMQDNEPLMRA 527
G + V++F + K EIA A+ A++ DV+++D+AGR+ ++ LM+
Sbjct: 145 -------GEQVGVEVFHE-ENKSVKEIANNALKRAKEAQFDVLIVDSAGRLAIDKELMQE 196
Query: 528 LAKLVKVNQPDLLLFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTID 587
L ++ +V P +L+V +AL G + V FN + + G+VL+KFD+ D
Sbjct: 197 LKEVKEVLNPHEVLYVADALSGQDGVKSANTFNEEIG----------VSGVVLSKFDS-D 245
Query: 588 DKVGAAISMTYITGQPIVFVGTGQTYTDLKSLNAKAVVNALM 629
K G A+ +TY G P+ F+G+G+ DL + +V LM
Sbjct: 246 SKGGIALGITYQLGLPLRFIGSGEKIPDLDVFMPERIVGRLM 287
>sp|P10121|FTSY_ECOLI Signal recognition particle receptor FtsY OS=Escherichia coli
(strain K12) GN=ftsY PE=1 SV=1
Length = 497
Score = 113 bits (283), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 76/225 (33%), Positives = 109/225 (48%), Gaps = 30/225 (13%)
Query: 411 PFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHP 470
PFV+ GVNGVGK+T + K+ + +V++AA DTFRA AVEQL+
Sbjct: 293 PFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQV---------- 342
Query: 471 AAKHGGREMVQLFEKGYGKDPAEIAFRAISHARDMHIDVVLIDTAGRMQDNEPLMRALAK 530
G R + + + G D A + F AI A+ +IDV++ DTAGR+Q+ LM L K
Sbjct: 343 ---WGQRNNIPVIAQHTGADSASVIFDAIQAAKARNIDVLIADTAGRLQNKSHLMEELKK 399
Query: 531 LVK------VNQPDLLLFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFD 584
+V+ V P ++ +A G AV Q F+ A+ + GI LTK D
Sbjct: 400 IVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKLFHEAVG----------LTGITLTKLD 449
Query: 585 TIDDKVGAAISMTYITGQPIVFVGTGQTYTDLKSLNAKAVVNALM 629
K G S+ G PI ++G G+ DL+ A + AL
Sbjct: 450 GT-AKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDFIEALF 493
>sp|O05948|FTSY_RICPR Signal recognition particle receptor FtsY OS=Rickettsia prowazekii
(strain Madrid E) GN=ftsY PE=3 SV=1
Length = 303
Score = 113 bits (283), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 69/214 (32%), Positives = 104/214 (48%), Gaps = 30/214 (14%)
Query: 413 VMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHPAA 472
++ CGVNGVGK+T + K+ V +AACDTFRA A+ QL + V +L
Sbjct: 103 IILVCGVNGVGKTTTIGKLSALYSAEGKKVAVAACDTFRAAAINQLSSWVHRANALLITG 162
Query: 473 KHGGREMVQLFEKGYGKDPAEIAFRAISHARDMHIDVVLIDTAGRMQDNEPLMRALAKLV 532
K DPA +A+RAI + +ID++ IDTAGR+ +N+ LM L+K+V
Sbjct: 163 KASA-------------DPASVAYRAIEESIKQNIDILFIDTAGRLHNNKNLMDELSKIV 209
Query: 533 KV------NQPDLLLFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTI 586
KV N P + + +A+ G +Q+ FN+ + G+++TK D
Sbjct: 210 KVIKKLDENAPTHSILIIDAITGQNTYNQIEYFNDVTN----------LTGLIVTKLDG- 258
Query: 587 DDKVGAAISMTYITGQPIVFVGTGQTYTDLKSLN 620
K G + P+ F+G G+ DLK N
Sbjct: 259 SAKAGVLVGAVQKFNLPVYFIGIGEKIEDLKIFN 292
>sp|Q6MTB9|FTSY_MYCMS Signal recognition particle receptor FtsY OS=Mycoplasma mycoides
subsp. mycoides SC (strain PG1) GN=ftsY PE=1 SV=1
Length = 400
Score = 113 bits (282), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 91/294 (30%), Positives = 143/294 (48%), Gaps = 46/294 (15%)
Query: 335 LEKMKDHLIAKNVAADIAVKLCDSVALKLEGKVLGTFESVANTVKSTLTDALVQ--ILSP 392
E+++D LI ++ + +K+ + V K + +FE++ + + +L A +
Sbjct: 117 FEELEDVLIQTDMGMKMVLKVSNLVRKKTKRDT--SFENIKDALVESLYQAYTDNDWTNK 174
Query: 393 KRRVDILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRA 452
K R+D K+ R + GVNG GK+T+LAK+ + E VLIAA DTFRA
Sbjct: 175 KYRIDF--------KENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFRA 226
Query: 453 GAVEQL----RTHVRHLCSLHPAAKHGGREMVQLFEKGYGKDPAEIAFRAISHARDMHID 508
GA +QL +T + + L A K DPA + F AI A++ + D
Sbjct: 227 GATQQLEEWIKTRLNNKVDLVKANKLNA-------------DPASVVFDAIKKAKEQNYD 273
Query: 509 VVLIDTAGRMQDNEPLMRALAKLVKVNQ------PDLLLFVGEALVGNEAVDQLVKFNNA 562
++LIDTAGR+Q+ LM L K+ K+ Q P +L V +A G V Q +F+
Sbjct: 274 LLLIDTAGRLQNKVNLMAELEKMNKIIQQVEKSAPHEVLLVIDATTGQNGVIQAEEFSK- 332
Query: 563 MADHSLSDNPHLIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGTGQTYTDL 616
+AD + GI+LTK D+ K G +++ + PI +G G+ DL
Sbjct: 333 VAD---------VSGIILTKMDST-SKGGIGLAIKELLNIPIKMIGVGEKVDDL 376
>sp|Q68VX4|FTSY_RICTY Signal recognition particle receptor FtsY OS=Rickettsia typhi
(strain ATCC VR-144 / Wilmington) GN=ftsY PE=3 SV=1
Length = 303
Score = 113 bits (282), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 70/214 (32%), Positives = 104/214 (48%), Gaps = 30/214 (14%)
Query: 413 VMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHPAA 472
++ CGVNGVGK+T + K+ V +AACDTFRA A+ QL + V +L
Sbjct: 103 IILICGVNGVGKTTTIGKLSALYSAQGKKVAVAACDTFRAAAINQLSSWVDRANAL---- 158
Query: 473 KHGGREMVQLFEKGYGKDPAEIAFRAISHARDMHIDVVLIDTAGRMQDNEPLMRALAKLV 532
L DPA +A+RAI + +ID++ IDTAGR+ +N+ LM L+K+V
Sbjct: 159 ---------LITGEVSADPASVAYRAIQESIKQNIDILFIDTAGRLHNNKNLMDELSKIV 209
Query: 533 KV------NQPDLLLFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTI 586
KV N P + + +A+ G +Q+ FN+ + G+++TK D
Sbjct: 210 KVIKKLDENAPTHSILIIDAVTGQNTYNQIEYFNDVTN----------LTGLIITKLDG- 258
Query: 587 DDKVGAAISMTYITGQPIVFVGTGQTYTDLKSLN 620
K G + PI F+G G+ DLK N
Sbjct: 259 SAKAGVLVGAVQKFNLPIYFIGIGEQIEDLKIFN 292
>sp|Q01442|SRP54_MYCMY Signal recognition particle protein OS=Mycoplasma mycoides GN=ffh
PE=1 SV=1
Length = 447
Score = 112 bits (279), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 86/306 (28%), Positives = 157/306 (51%), Gaps = 36/306 (11%)
Query: 326 LTKSDMKPILEKMKDHLIAKNVAADIAVKLCDSVALKLEGKVLGTFESVANTVKSTLTDA 385
L + ++K L++++ L+ +V + A ++ ++V K G + S + + +
Sbjct: 24 LNEENIKETLKEIRLSLLEADVNIEAAKEIINNVKQKALGGYISEGASAHQQMIKIVHEE 83
Query: 386 LVQILSPKRR-VDILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLI 444
LV IL + +DI + +P V+ G+ G GK+T K+ + L + N ++
Sbjct: 84 LVNILGKENAPLDINK---------KPSVVMMVGLQGSGKTTTANKLAYLLNKKNKKKVL 134
Query: 445 A-ACDTFRAGAVEQLRTHVRHLCSLHPAAKHGGREMVQLFEKGYGKDPAEIAFRAISHAR 503
D +R GA+EQL + G + Q+FEKG +DP + A +A+ +A+
Sbjct: 135 LVGLDIYRPGAIEQL-------------VQLGQKTNTQVFEKGK-QDPVKTAEQALEYAK 180
Query: 504 DMHIDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQLVKFNNAM 563
+ + DVV++DTAGR+Q ++ LM+ L L K P+ +L V + + G E ++ +FN+ +
Sbjct: 181 ENNFDVVILDTAGRLQVDQVLMKELDNLKKKTSPNEILLVVDGMSGQEIINVTNEFNDKL 240
Query: 564 ADHSLSDNPHLIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGTGQTYTDLKSLNAKA 623
+ G+V+TK D D + GA +S++Y+T PI F+G G+ Y L + K
Sbjct: 241 K----------LSGVVVTKLDG-DARGGATLSISYLTKLPIKFIGEGEGYNALAAFYPKR 289
Query: 624 VVNALM 629
+ + LM
Sbjct: 290 MADRLM 295
>sp|Q55311|SRP54_SYNE7 Signal recognition particle protein OS=Synechococcus elongatus
(strain PCC 7942) GN=ffh PE=3 SV=1
Length = 485
Score = 110 bits (276), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 84/316 (26%), Positives = 156/316 (49%), Gaps = 43/316 (13%)
Query: 320 LVGSKNLTKSDMKPILEKMKDHLIAKNVAADIAVKLCDSVALKLEGKVLGTFESVANTVK 379
L G +++S+++ L++++ L+ AD+ + + +++ K +GT V + ++
Sbjct: 16 LRGQDKISESNVQEALKEVRRALLE----ADVNLGVVKEFIAQVQEKAVGT--QVISGIR 69
Query: 380 S------TLTDALVQILSPKRRVDILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICF 433
+ D LVQ++ + V + A+ P V+ G+ G GK+T AK+
Sbjct: 70 PDQQFIKVVYDELVQVMG-ETHVPL------AQAAKAPTVILMAGLQGAGKTTATAKLAL 122
Query: 434 WLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHPAAKHGGREMVQLFEKGYGKDPAE 493
L + + L+ A D +R A++QL T + + V +FE G +P E
Sbjct: 123 HLRKEGRSTLLVATDVYRPAAIDQLITLGKQID-------------VPVFELGSDANPVE 169
Query: 494 IAFRAISHARDMHIDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAV 553
IA + + AR ID V++DTAGR+Q + +M LA++ + P +L V ++++G EA
Sbjct: 170 IARQGVEKARQEGIDTVIVDTAGRLQIDTEMMEELAQVKEAIAPHEVLLVVDSMIGQEAA 229
Query: 554 DQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGTGQTY 613
F+ + I G +LTK D D + GAA+S+ ++GQPI FVG G+
Sbjct: 230 SLTRSFHERIG----------ITGAILTKLDG-DSRGGAALSIRRVSGQPIKFVGLGEKV 278
Query: 614 TDLKSLNAKAVVNALM 629
L+ + + + + ++
Sbjct: 279 EALQPFHPERMASRIL 294
>sp|Q4UK46|FTSY_RICFE Signal recognition particle receptor FtsY OS=Rickettsia felis
(strain ATCC VR-1525 / URRWXCal2) GN=ftsY PE=3 SV=1
Length = 303
Score = 110 bits (276), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 70/214 (32%), Positives = 104/214 (48%), Gaps = 30/214 (14%)
Query: 413 VMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHPAA 472
V+ CGVNG GK+T + K+ V +AACDTFRA AV QL T V +L
Sbjct: 103 VILVCGVNGAGKTTTIGKLAAMYGMQGKKVAVAACDTFRAAAVNQLSTWVDRANALLITG 162
Query: 473 KHGGREMVQLFEKGYGKDPAEIAFRAISHARDMHIDVVLIDTAGRMQDNEPLMRALAKLV 532
+ DPA +A+RA+ + +ID++ IDTAGR+ + + LM L+K+V
Sbjct: 163 EESA-------------DPASVAYRAMEESIKQNIDILFIDTAGRLHNKKNLMDELSKIV 209
Query: 533 KV------NQPDLLLFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTI 586
KV N P + V +A+ G +Q+ FN+A + G+++TK D
Sbjct: 210 KVIKKLDENAPTHSVLVIDAITGQNTYNQVEHFNDATN----------LTGLIVTKLDG- 258
Query: 587 DDKVGAAISMTYITGQPIVFVGTGQTYTDLKSLN 620
K G + + P+ F+G G+ DLK N
Sbjct: 259 SAKAGVLVGVVQKFNLPVYFIGIGEKIEDLKIFN 292
>sp|A9CHH2|FTSY_AGRT5 Signal recognition particle receptor FtsY OS=Agrobacterium
tumefaciens (strain C58 / ATCC 33970) GN=ftsY PE=3 SV=1
Length = 478
Score = 110 bits (275), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 85/300 (28%), Positives = 143/300 (47%), Gaps = 41/300 (13%)
Query: 335 LEKMKDHLIAKNVAADIAVKLCDSVALKLEGKVLGTFESVANTVKSTLTDALVQILSPKR 394
L++++D LI ++ + A+++ +++ + GK + + E VA + +T L + P
Sbjct: 211 LDELEDLLIQSDLGVETAMRITGALSSERYGKDV-SGEDVARIMAGEITKVLKPVAKP-- 267
Query: 395 RVDILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGA 454
LE +P V+ GVNG GK+T + K+ L + L V++AA DTFRA A
Sbjct: 268 --------LELDLSHKPHVILVVGVNGTGKTTTIGKLAAKLSGSGLKVMLAAGDTFRAAA 319
Query: 455 VEQLRTHVRHLCSLHPAAKHGGREMVQLFEKGYGKDPAEIAFRAISHARDMHIDVVLIDT 514
+EQL+ A G E + G D A +A+ A AR DV++IDT
Sbjct: 320 IEQLKIW----------ADRTGSEFIG---TKLGADAAGLAYDAYEQARAQKSDVLIIDT 366
Query: 515 AGRMQDNEPLMRALAKLVKV------NQPDLLLFVGEALVGNEAVDQLVKFNNAMADHSL 568
AGR+Q+ LM L K+V+V + P +L +A G A++Q+ F N
Sbjct: 367 AGRLQNKTELMAELEKIVRVLGKLDPDAPHTVLQTLDATTGQNAMNQVEIFRNVAG---- 422
Query: 569 SDNPHLIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGTGQTYTDLKSLNAKAVVNAL 628
+ G+++TK D + G +++ P+ F+G G+ DL+ A+ A+
Sbjct: 423 ------VSGLIMTKLDGT-ARGGILVAIAAKHKLPVYFIGVGEGVEDLEPFEAEDFAKAI 475
>sp|P44870|FTSY_HAEIN Signal recognition particle receptor FtsY OS=Haemophilus influenzae
(strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=ftsY PE=3
SV=1
Length = 414
Score = 110 bits (275), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 75/233 (32%), Positives = 111/233 (47%), Gaps = 30/233 (12%)
Query: 403 LEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHV 462
LE +P+V+ GVNGVGK+T + K+ +V++AA DTFRA AVEQL+
Sbjct: 201 LEIDSTKKPYVILMVGVNGVGKTTTIGKLARKFQAEGKSVMLAAGDTFRAAAVEQLQV-- 258
Query: 463 RHLCSLHPAAKHGGREMVQLFEKGYGKDPAEIAFRAISHARDMHIDVVLIDTAGRMQDNE 522
G R + + + G D A + F A+ A +ID+++ DTAGR+Q+
Sbjct: 259 -----------WGERNHIPVVAQSTGSDSASVIFDAMQSAAARNIDILIADTAGRLQNKN 307
Query: 523 PLMRALAKLVKV------NQPDLLLFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLID 576
LM L K+V+V P ++ +A G A+ Q FN A+ +
Sbjct: 308 NLMDELKKIVRVMKKYDETAPHEIMLTLDAGTGQNAISQAKLFNEAVG----------LT 357
Query: 577 GIVLTKFDTIDDKVGAAISMTYITGQPIVFVGTGQTYTDLKSLNAKAVVNALM 629
GI LTK D K G ++ PI ++G G+ DL+ NAK + AL
Sbjct: 358 GISLTKLDGT-AKGGVIFAIADQFKLPIRYIGVGEKIEDLREFNAKEFIEALF 409
>sp|O30391|FTSY_NEIMC Signal recognition particle receptor FtsY OS=Neisseria meningitidis
serogroup C GN=ftsY PE=3 SV=1
Length = 421
Score = 110 bits (274), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 78/260 (30%), Positives = 130/260 (50%), Gaps = 37/260 (14%)
Query: 376 NTVKSTLTDALVQILSPKRRVDILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWL 435
N ++ L +AL ++ P + +L + E PFV+ G+NG GK+T++ K+ +
Sbjct: 192 NELRGALKEALYDLIKPLEKPLVLPETKE------PFVIMLAGINGAGKTTSIGKLAKYF 245
Query: 436 IENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHPAAKHGGREMVQLFEKGYGKDPAEIA 495
+VL+AA DTFRA A EQL+ G R V + + G D A +
Sbjct: 246 QAQGKSVLLAAGDTFRAAAREQLQA-------------WGERNNVTVISQTTG-DSAAVC 291
Query: 496 FRAISHARDMHIDVVLIDTAGRMQDNEPLMRALAKLVKVNQ------PDLLLFVGEALVG 549
F A+ A+ ID+VL DTAGR+ LM + K+ +V Q P ++ V +A +G
Sbjct: 292 FDAVQAAKARGIDIVLADTAGRLPTQLHLMEEIKKVKRVLQKAMPDAPHEIIVVLDANIG 351
Query: 550 NEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGT 609
AV+Q+ F++A+ + G+++TK D K G ++ P+ ++G
Sbjct: 352 QNAVNQVKAFDDALG----------LTGLIVTKLDGT-AKGGILAALASDRPVPVRYIGV 400
Query: 610 GQTYTDLKSLNAKAVVNALM 629
G+ DL+ +A+A V+AL+
Sbjct: 401 GEGIDDLRPFDARAFVDALL 420
>sp|P57010|FTSY_NEIMA Signal recognition particle receptor FtsY OS=Neisseria meningitidis
serogroup A / serotype 4A (strain Z2491) GN=ftsY PE=3
SV=1
Length = 421
Score = 110 bits (274), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 78/260 (30%), Positives = 130/260 (50%), Gaps = 37/260 (14%)
Query: 376 NTVKSTLTDALVQILSPKRRVDILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWL 435
N ++ L +AL ++ P + +L + E PFV+ G+NG GK+T++ K+ +
Sbjct: 192 NELRGALKEALYDLIKPLEKPLVLPETKE------PFVIMLAGINGAGKTTSIGKLAKYF 245
Query: 436 IENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHPAAKHGGREMVQLFEKGYGKDPAEIA 495
+VL+AA DTFRA A EQL+ G R V + + G D A +
Sbjct: 246 QAQGKSVLLAAGDTFRAAAREQLQA-------------WGERNNVTVISQTTG-DSAAVC 291
Query: 496 FRAISHARDMHIDVVLIDTAGRMQDNEPLMRALAKLVKVNQ------PDLLLFVGEALVG 549
F A+ A+ ID+VL DTAGR+ LM + K+ +V Q P ++ V +A +G
Sbjct: 292 FDAVQAAKARGIDIVLADTAGRLPTQLHLMEEIKKVKRVLQKAMPDAPHEIIVVLDANIG 351
Query: 550 NEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGT 609
AV+Q+ F++A+ + G+++TK D K G ++ P+ ++G
Sbjct: 352 QNAVNQVKAFDDALG----------LTGLIVTKLDGT-AKGGILAALASDRPVPVRYIGV 400
Query: 610 GQTYTDLKSLNAKAVVNALM 629
G+ DL+ +A+A V+AL+
Sbjct: 401 GEGIDDLRPFDARAFVDALL 420
>sp|P57011|FTSY_NEIMB Signal recognition particle receptor FtsY OS=Neisseria meningitidis
serogroup B (strain MC58) GN=ftsY PE=3 SV=1
Length = 421
Score = 110 bits (274), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 78/260 (30%), Positives = 130/260 (50%), Gaps = 37/260 (14%)
Query: 376 NTVKSTLTDALVQILSPKRRVDILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWL 435
N ++ L +AL ++ P + +L + E PFV+ G+NG GK+T++ K+ +
Sbjct: 192 NELRGALKEALYDLIKPLEKPLVLPETKE------PFVIMLAGINGAGKTTSIGKLAKYF 245
Query: 436 IENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHPAAKHGGREMVQLFEKGYGKDPAEIA 495
+VL+AA DTFRA A EQL+ G R V + + G D A +
Sbjct: 246 QAQGKSVLLAAGDTFRAAAREQLQA-------------WGERNNVTVISQTTG-DSAAVC 291
Query: 496 FRAISHARDMHIDVVLIDTAGRMQDNEPLMRALAKLVKVNQ------PDLLLFVGEALVG 549
F A+ A+ ID+VL DTAGR+ LM + K+ +V Q P ++ V +A +G
Sbjct: 292 FDAVQAAKARGIDIVLADTAGRLPTQLHLMEEIKKVKRVLQKAMPDAPHEIIVVLDANIG 351
Query: 550 NEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGT 609
AV+Q+ F++A+ + G+++TK D K G ++ P+ ++G
Sbjct: 352 QNAVNQVKAFDDALG----------LTGLIVTKLDGT-AKGGILAALASDRPVPVRYIGV 400
Query: 610 GQTYTDLKSLNAKAVVNALM 629
G+ DL+ +A+A V+AL+
Sbjct: 401 GEGIDDLRPFDARAFVDALL 420
>sp|Q726P7|FTSY_DESVH Signal recognition particle receptor FtsY OS=Desulfovibrio vulgaris
(strain Hildenborough / ATCC 29579 / NCIMB 8303) GN=ftsY
PE=3 SV=1
Length = 488
Score = 110 bits (274), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 83/253 (32%), Positives = 119/253 (47%), Gaps = 40/253 (15%)
Query: 392 PKRRVDILRDALE----AKKQ----GRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVL 443
P R ++LR+ LE A ++ P V+ GVNGVGK+T +AK+ + VL
Sbjct: 253 PARFRELLREELEVIFRAPRRIAAVNPPEVVLLIGVNGVGKTTTIAKLAYRAQLQGRKVL 312
Query: 444 IAACDTFRAGAVEQLRTHVRHLCSLHPAAKHGGREMVQLFEKGYGKDPAEIAFRAISHAR 503
IAA DTFRA A+EQL + + + + K G DPA +A+ A+ A
Sbjct: 313 IAAGDTFRAAAIEQLEIWAKRVGA-------------GFYAKTAGADPAAVAYEAMDKAV 359
Query: 504 DMHIDVVLIDTAGRMQDNEPLMRALAKLVKV------NQPDLLLFVGEALVGNEAVDQLV 557
D++L+DTAGR+ LM L K+ KV P + V +A G A+ Q
Sbjct: 360 SEGYDLLLVDTAGRLHTKANLMEELHKIRKVLGRKHPGAPHRSILVIDATTGQNALSQTK 419
Query: 558 KFNNAMADHSLSDNPHLIDGIVLTKFD-TIDDKVGAAISMTYITGQPIVFVGTGQTYTDL 616
FN A +D IVLTK D T + A++M + G PI +VG G+ D+
Sbjct: 420 LFNEACG----------VDEIVLTKLDGTAKGGIVVAVAMQF--GIPITYVGLGEKMEDM 467
Query: 617 KSLNAKAVVNALM 629
+ N AL+
Sbjct: 468 RPFNGSDFAMALL 480
>sp|Q1RHD6|SRP54_RICBR Signal recognition particle protein OS=Rickettsia bellii (strain
RML369-C) GN=ffh PE=3 SV=1
Length = 449
Score = 108 bits (270), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 88/319 (27%), Positives = 151/319 (47%), Gaps = 29/319 (9%)
Query: 311 KGMFSLFRGLVGSKNLTKSDMKPILEKMKDHLIAKNVAADIAVKLCDSVALKLEGKVLGT 370
+ + +F LV S LT+ + L ++ L+ +VA + V K G+ +
Sbjct: 7 QNLMKIFDRLVSSGLLTEEQIDAALRDIRVALLESDVALPVIKNFVAEVKQKALGQEVIK 66
Query: 371 FESVANTVKSTLTDALVQILSPKRRVDILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAK 430
S + + + ++ ILS D ++ L AK P + G+ G GK+T K
Sbjct: 67 SVSPGQMIIKIIHEEMINILSSSE--DEIKLNLNAKP---PVNLLMVGLQGSGKTTASGK 121
Query: 431 ICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHPAAKHGGREMVQLFEKGYGKD 490
+ L N VL+ + DT+R A EQL L + K +V+ G+
Sbjct: 122 LALCLKNQNKKVLLVSLDTYRPAAQEQLEI-------LANSVKINSLPIVK------GEK 168
Query: 491 PAEIAFRAISHARDMHIDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGN 550
P +I RA++ A+ D+V+ DTAGR Q ++ +M + K+ +P L V +++ G
Sbjct: 169 PLDIVKRAMAEAKLSAYDIVIYDTAGRTQIDQEMMNEAIAIKKIVEPTETLLVIDSMTGQ 228
Query: 551 EAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGTG 610
+AV FN + I G++L++ D D K GAA+S+ YIT +PI F+ +G
Sbjct: 229 DAVVTASSFNEQLE----------ISGLILSRIDG-DSKGGAALSVKYITQRPIKFLSSG 277
Query: 611 QTYTDLKSLNAKAVVNALM 629
+ TDL+ +AK + + ++
Sbjct: 278 EKLTDLEEFDAKRIASRIL 296
>sp|Q1RKK5|FTSY_RICBR Signal recognition particle receptor FtsY OS=Rickettsia bellii
(strain RML369-C) GN=ftsY PE=3 SV=1
Length = 303
Score = 107 bits (268), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 70/214 (32%), Positives = 102/214 (47%), Gaps = 30/214 (14%)
Query: 413 VMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHPAA 472
V+ CGVNG GK+T + K+ V +AACDTFRA AV QL + V +L
Sbjct: 103 VVLVCGVNGAGKTTTIGKLAAMYGMQGKKVAVAACDTFRAAAVNQLDSWVTRAKALLITG 162
Query: 473 KHGGREMVQLFEKGYGKDPAEIAFRAISHARDMHIDVVLIDTAGRMQDNEPLMRALAKLV 532
+ DPA +A+RA+ + ID++ IDTAGR+ + + LM L K+V
Sbjct: 163 EEAA-------------DPASVAYRAVEESIKQDIDILFIDTAGRLHNKKNLMDELTKIV 209
Query: 533 KV------NQPDLLLFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTI 586
KV N P + V +A+ G +Q+ FN+A + G+++TK D
Sbjct: 210 KVIKKVDENLPTHSVLVIDAITGQNTYNQVEHFNDATN----------LTGLIVTKLDG- 258
Query: 587 DDKVGAAISMTYITGQPIVFVGTGQTYTDLKSLN 620
K G + + PI F+G G+ DLK N
Sbjct: 259 SAKAGVIVGVVQRFNLPIYFIGIGEQIEDLKIFN 292
>sp|Q92GB8|FTSY_RICCN Signal recognition particle receptor FtsY OS=Rickettsia conorii
(strain ATCC VR-613 / Malish 7) GN=ftsY PE=3 SV=1
Length = 303
Score = 107 bits (268), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 68/214 (31%), Positives = 102/214 (47%), Gaps = 30/214 (14%)
Query: 413 VMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHPAA 472
V+ CGVNG GK+T + K+ V +AACDTFRA AV QL T +L
Sbjct: 103 VILVCGVNGAGKTTTIGKLASMYSAQGKKVAVAACDTFRAAAVNQLSTWADRANALLITG 162
Query: 473 KHGGREMVQLFEKGYGKDPAEIAFRAISHARDMHIDVVLIDTAGRMQDNEPLMRALAKLV 532
+ DPA +A+R + + +ID++ IDTAGR+ + + LM L+K+V
Sbjct: 163 EESA-------------DPASVAYRGMEESIKQNIDILFIDTAGRLHNKKNLMDELSKIV 209
Query: 533 KV------NQPDLLLFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTI 586
KV N P + V +A+ G +Q+ FN+A + G+++TK D
Sbjct: 210 KVIKKLDENAPTHSVLVIDAITGQNTYNQVEHFNDATN----------LTGLIVTKLDG- 258
Query: 587 DDKVGAAISMTYITGQPIVFVGTGQTYTDLKSLN 620
K G + + P+ F+G G+ DLK N
Sbjct: 259 SAKAGVIVGVVQKFNLPLYFIGIGEKIEDLKIFN 292
>sp|P14929|FTSY_NEIGO Signal recognition particle receptor FtsY OS=Neisseria gonorrhoeae
GN=ftsY PE=1 SV=2
Length = 416
Score = 107 bits (268), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 78/260 (30%), Positives = 130/260 (50%), Gaps = 38/260 (14%)
Query: 376 NTVKSTLTDALVQILSPKRRVDILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWL 435
N ++ L +AL ++ P + +L + E PFV+ G+NG GK+T++ K+ +
Sbjct: 188 NELRGALKEALYDLIKPLEKPLVLPETKE------PFVIMLAGINGAGKTTSIGKLAKYF 241
Query: 436 IENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHPAAKHGGREMVQLFEKGYGKDPAEIA 495
+VL+AA DTFRA A EQL+ GGR V + + G D A +
Sbjct: 242 QAQGKSVLLAAGDTFRAAAREQLQA-------------WGGRNNVTVISQTTG-DSAAVC 287
Query: 496 FRAISHARDMHIDVVLIDTAGRMQDNEPLMRALAKLVKVNQ------PDLLLFVGEALVG 549
F A+ A+ ID+VL DTAGR+ LM + K+ +V Q P ++ V +A +G
Sbjct: 288 FDAVQAAK-ARIDIVLADTAGRLPTQLHLMEEIKKVKRVLQKAIPGAPHEIIVVLDANIG 346
Query: 550 NEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGT 609
AV+Q+ F++A+ + G+++TK D K G ++ P+ ++G
Sbjct: 347 QNAVNQVKAFDDALG----------LTGLIVTKLDGT-AKGGILAALASDRPVPVRYIGV 395
Query: 610 GQTYTDLKSLNAKAVVNALM 629
G+ DL+ +A+A V+ L+
Sbjct: 396 GEGIDDLRPFDARAFVDRLL 415
>sp|P37107|SR54C_ARATH Signal recognition particle 54 kDa protein, chloroplastic
OS=Arabidopsis thaliana GN=FFC PE=1 SV=1
Length = 564
Score = 105 bits (261), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 85/313 (27%), Positives = 152/313 (48%), Gaps = 35/313 (11%)
Query: 307 GKANKGMFSLFRGLVGSKNLTKSDMKPILEKMKDHLIAKNVAADIAVKLCDSVALKLEGK 366
G+ G+ + + L G + LTK ++ + ++ L+ +V+ + + SV+ + G
Sbjct: 79 GQLTGGLEAAWSKLKGEEVLTKDNIAEPMRDIRRALLEADVSLPVVRRFVQSVSDQAVG- 137
Query: 367 VLGTFESVA--NTVKSTLTDALVQILSPKRRVDILRDALEAKKQGRPFVMAFCGVNGVGK 424
+G V + + D LV+++ + L+ K G P V+ G+ GVGK
Sbjct: 138 -MGVIRGVKPDQQLVKIVHDELVKLMGGEV------SELQFAKSG-PTVILLAGLQGVGK 189
Query: 425 STNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHPAAKHGGREMVQLFE 484
+T AK+ +L + + ++ A D +R A++QL G + V ++
Sbjct: 190 TTVCAKLACYLKKQGKSCMLIAGDVYRPAAIDQL-------------VILGEQVGVPVYT 236
Query: 485 KGYGKDPAEIAFRAISHARDMHIDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVG 544
G PA+IA + + A+ ++DVV++DTAGR+Q ++ +M L + K P +L V
Sbjct: 237 AGTDVKPADIAKQGLKEAKKNNVDVVIMDTAGRLQIDKGMMDELKDVKKFLNPTEVLLVV 296
Query: 545 EALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTIDDKVGAAISMTYITGQPI 604
+A+ G EA + FN + I G +LTK D D + GAA+S+ ++G+PI
Sbjct: 297 DAMTGQEAAALVTTFNVEIG----------ITGAILTKLDG-DSRGGAALSVKEVSGKPI 345
Query: 605 VFVGTGQTYTDLK 617
VG G+ DL+
Sbjct: 346 KLVGRGERMEDLE 358
>sp|Q3IUP1|SRP54_NATPD Signal recognition particle 54 kDa protein OS=Natronomonas
pharaonis (strain DSM 2160 / ATCC 35678) GN=srp54 PE=3
SV=1
Length = 466
Score = 103 bits (257), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 80/310 (25%), Positives = 140/310 (45%), Gaps = 37/310 (11%)
Query: 320 LVGSKNLTKSDMKPILEKMKDHLIAKNVAADIAVKLCDSVALKLEGKVLGTFESVANTVK 379
L G L++ D++ I+++++ L++ +V D+ + L DS+ + + + + V
Sbjct: 17 LQGKTTLSEDDVEEIVKEIQRSLLSADVDVDLVMDLSDSIRERALDEEPPAGTTARDHVL 76
Query: 380 STLTDALVQILSPKRRVDILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENN 439
+ + +V+++ AL ++Q + G+ G GK+T AK+ +W +
Sbjct: 77 KIVYEEMVELVGEST-------ALPLEEQ----TIVLAGLQGSGKTTTAAKMAWWFSKKG 125
Query: 440 LNVLIAACDTFRAGAVEQLRTHVRHLCSLHPAAKHGGREMVQLFEKGYGKDPAEIAFRAI 499
L + DTFR GA +Q + +C R V + DP EIA R +
Sbjct: 126 LRPAVIQTDTFRPGAYDQ----AKEMCE---------RAEVDFYGNPDSDDPVEIAERGL 172
Query: 500 SHARDMHIDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQLVKF 559
D DV ++DTAGR E L+ L + PD L V +A +G A DQ +F
Sbjct: 173 EETAD--ADVHIVDTAGRHALEEALIDELEAIESAVDPDRNLLVLDAAIGQGAKDQAERF 230
Query: 560 NNAMADHSLSDNPHLIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGTGQTYTDLKSL 619
++A+ IDG+ +TK D K G A++ T I F+GTG+ D++
Sbjct: 231 HDAVG----------IDGVAITKLDGT-AKGGGALAAVDQTDSSIAFLGTGEEVKDIERF 279
Query: 620 NAKAVVNALM 629
++ L+
Sbjct: 280 EPSGFISRLL 289
>sp|O33013|SRP54_MYCLE Signal recognition particle protein OS=Mycobacterium leprae (strain
TN) GN=ffh PE=3 SV=1
Length = 521
Score = 103 bits (256), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 84/302 (27%), Positives = 135/302 (44%), Gaps = 24/302 (7%)
Query: 315 SLFRGLVGSKNLTKSDMKPILEKMKDHLIAKNVAADIAVKLCDSVALKLEGKVLGTFESV 374
+ +GL G LT +D++ +++ L +V+ + + + G + +
Sbjct: 11 GVIQGLRGKGRLTDADIEATTREIRLALFEADVSLPVVRAFVHRIKERARGTEVSAALNP 70
Query: 375 ANTVKSTLTDALVQILSPKRRVDILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFW 434
A + + + L+ IL + R A + P V+ G+ G GK+T K+
Sbjct: 71 AQQIVKIVNEELIGILGGETR-------QLAFAKTPPTVVMLAGLQGSGKTTLAGKLAVR 123
Query: 435 LIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHPAAKHGGREMVQLFEKGYGKDPAEI 494
L L+ ACD R AV QL+ V + A H G + G G DP +
Sbjct: 124 LRRQGHTPLLVACDLQRPAAVNQLQV-VGERAGVPVFAPHPGASP----DSGPG-DPVAV 177
Query: 495 AFRAISHARDMHIDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVD 554
A + AR H DVV++DTAGR+ ++ LM + + PD +LFV +A++G +AV
Sbjct: 178 ASAGLVEARAKHFDVVIVDTAGRLGIDDELMAQAGAIREAINPDEVLFVLDAMIGQDAVT 237
Query: 555 QLVKFNNAMADHSLSDNPHLIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGTGQTYT 614
F + G+VLTK D D + GAA+S+ +TG PI+F TG+
Sbjct: 238 TAAAFGAGVG----------FTGVVLTKLDG-DARGGAALSVREVTGVPILFATTGEKLD 286
Query: 615 DL 616
D
Sbjct: 287 DF 288
>sp|Q92J55|SRP54_RICCN Signal recognition particle protein OS=Rickettsia conorii (strain
ATCC VR-613 / Malish 7) GN=ffh PE=3 SV=1
Length = 449
Score = 102 bits (255), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 68/219 (31%), Positives = 111/219 (50%), Gaps = 24/219 (10%)
Query: 411 PFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHP 470
P G+ G GK+T +K+ L N VL+ + DT+R A EQL L
Sbjct: 102 PVNFLMVGLQGSGKTTASSKLALRLRNQNKKVLLVSLDTYRPAAQEQL-------AILAN 154
Query: 471 AAKHGGREMVQLFEKGYGKDPAEIAFRAISHARDMHIDVVLIDTAGRMQDNEPLMRALAK 530
+ + +VQ G+ P +I RAI+ A+ DVV+ DTAGR Q ++ +M
Sbjct: 155 SVQINSLPIVQ------GEKPLDIVKRAIAEAKISAYDVVIYDTAGRTQIDKAMMEEALA 208
Query: 531 LVKVNQPDLLLFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTIDDKV 590
+ K+ +P L V +++ G +AV FN +A I G++L++ D D K
Sbjct: 209 IKKIVEPTETLLVIDSMTGQDAVVTASSFNEKLA----------ISGLILSRIDG-DSKG 257
Query: 591 GAAISMTYITGQPIVFVGTGQTYTDLKSLNAKAVVNALM 629
GAA+S+ YIT +PI F+ +G+ DL+ +A+ + + ++
Sbjct: 258 GAALSVKYITKKPIKFLSSGENLIDLEEFDAERLASRIL 296
>sp|P57473|SRP54_BUCAI Signal recognition particle protein OS=Buchnera aphidicola subsp.
Acyrthosiphon pisum (strain APS) GN=ffh PE=3 SV=1
Length = 451
Score = 102 bits (254), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 68/220 (30%), Positives = 117/220 (53%), Gaps = 25/220 (11%)
Query: 411 PFVMAFCGVNGVGKSTNLAKI-CFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLH 469
P V+ G+ G GK+T+LAK+ + + +LI + DT+RA A+EQL+ +
Sbjct: 100 PAVILVVGLQGSGKTTSLAKLGKWIKNKYKKKILITSTDTYRAAAIEQLKILSDQIE--- 156
Query: 470 PAAKHGGREMVQLFEKGYGKDPAEIAFRAISHARDMHIDVVLIDTAGRMQDNEPLMRALA 529
+ FE P EI AI +A+ DV+LIDTAGR+ ++ +M +
Sbjct: 157 ----------IDFFESDKHHTPIEITKNAIKYAKLKLYDVLLIDTAGRLHIDKKMMNEIQ 206
Query: 530 KLVKVNQPDLLLFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTIDDK 589
++ +++ L + ++++G +A++ FNN + LI GI+LTK D D +
Sbjct: 207 QIQVISKAIETLLIVDSMMGQDAINMAKIFNNDL----------LISGIILTKTDG-DSR 255
Query: 590 VGAAISMTYITGQPIVFVGTGQTYTDLKSLNAKAVVNALM 629
G A+SM YITG+PI F+GTG+ L+ + + + + ++
Sbjct: 256 SGIALSMRYITGKPIKFIGTGEKIISLEPFHPERIADRIL 295
>sp|P49971|SR541_SOLLC Signal recognition particle 54 kDa protein 1 OS=Solanum
lycopersicum PE=3 SV=1
Length = 496
Score = 102 bits (254), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 77/320 (24%), Positives = 147/320 (45%), Gaps = 37/320 (11%)
Query: 315 SLFRGLVGSKNLTKSDMKPILEKMKDHLIAKNVAADIAVKLCDSVALKLEGKV----LGT 370
S+ R L N T D K +L + + + + AD+ KL ++ ++ V L
Sbjct: 9 SISRALQQMSNATIIDEK-VLNECLNEITRALLQADVQFKLVRDMSTNIKKIVNLEDLAA 67
Query: 371 FESVANTVKSTLTDALVQILSPKRRVDILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAK 430
+ ++ + + L +IL P + L K+G+P V+ F G+ G GK+T K
Sbjct: 68 GHNKRRIIQQAVYNELCKILDPGKPAFTL-------KKGKPSVVMFVGLQGSGKTTTCTK 120
Query: 431 ICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHPAAKHGGREMVQLFEKGYGK- 489
+ + + DTFRAGA +QL+ ++ + + + Y +
Sbjct: 121 YAYHHQKRGWKPALVCADTFRAGAFDQLK-------------QNATKAKIPFYGSSYTES 167
Query: 490 DPAEIAFRAISHARDMHIDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVG 549
DP +IA + + + D++++DT+GR + L + ++ + +PDL++FV ++ +G
Sbjct: 168 DPVKIAVDGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEAQKPDLVIFVMDSSIG 227
Query: 550 NEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGT 609
A DQ F ++A + +++TK D K G A+S T P++F+GT
Sbjct: 228 QAAFDQAQAFRQSVA----------VGAVIVTKMDG-HAKGGGALSRVAATKSPVIFIGT 276
Query: 610 GQTYTDLKSLNAKAVVNALM 629
G+ + + + K V+ L+
Sbjct: 277 GEHMDEFEVFDVKPFVSRLL 296
>sp|Q5JJC8|SRP54_PYRKO Signal recognition particle 54 kDa protein OS=Pyrococcus
kodakaraensis (strain ATCC BAA-918 / JCM 12380 / KOD1)
GN=srp54 PE=3 SV=1
Length = 448
Score = 102 bits (254), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 63/220 (28%), Positives = 111/220 (50%), Gaps = 24/220 (10%)
Query: 410 RPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLH 469
+P V+ G+ G GK+T++AK+ +L + V + DT+R GA QLR L
Sbjct: 99 KPTVILTVGIQGSGKTTSVAKLARYLQKRGYKVGVVCSDTWRPGAYYQLRQL------LD 152
Query: 470 PAAKHGGREMVQLFEKGYGKDPAEIAFRAISHARDMHIDVVLIDTAGRMQDNEPLMRALA 529
P +++F KD ++A + H R+ +DV+++D+AGR ++ + L+ +
Sbjct: 153 PFG-------IEVFGDPEEKDAVKLAREGVEHFREKGVDVIIVDSAGRHKEEKGLIEEMR 205
Query: 530 KLVKVNQPDLLLFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTIDDK 589
++ + +P ++ V + +G +A +Q + F A I I++TK D K
Sbjct: 206 QISEAIKPHEVILVIDGTIGQQAYNQAMAFKEATP----------IGSIIVTKLDG-SAK 254
Query: 590 VGAAISMTYITGQPIVFVGTGQTYTDLKSLNAKAVVNALM 629
G A+S TG PI F+GTG+ DL+ + K V+ L+
Sbjct: 255 GGGALSAVAATGAPIKFIGTGERIDDLEPFDPKRFVSRLL 294
>sp|O67615|SRP54_AQUAE Signal recognition particle protein OS=Aquifex aeolicus (strain
VF5) GN=ffh PE=3 SV=1
Length = 454
Score = 101 bits (252), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 80/298 (26%), Positives = 145/298 (48%), Gaps = 36/298 (12%)
Query: 320 LVGSKNLTKSDMKPILEKMKDHLIAKNVAADIAVKLCDSVALKLEGKVLGTFESVANTVK 379
L ++ +T+ ++ L +++ L+ +V +A + K+ GK + S A V
Sbjct: 16 LTNARKITEKNINQTLREIRLALLEADVDYQVAKDFIKRIREKVVGKEVPKNLSPAEFVI 75
Query: 380 STLTDALVQILSPKRRVDILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENN 439
T+ + LV IL ++ D+ K+G + F G+ G GK+T + KI L +
Sbjct: 76 KTVYEELVDILGGEK-ADL--------KKG---TVLFVGLQGTGKTTTIGKIANLLKKGG 123
Query: 440 LNVLIAACDTFRAGAVEQLRTHVRHLCSLHPAAKHGGREMVQLFEKGYGKDPAEIAFRAI 499
V +++ D R A+ QL+ + + FE+G G EIA RA+
Sbjct: 124 HKVAVSSTDLRRPAAMLQLQRLAERVGVPYYE-----------FEEGLG--AVEIARRAV 170
Query: 500 SHARDMHIDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQLVKF 559
A++ +D +L+DTAGR+ +E LM+ L ++ +V P +L+V +A+ G A++ F
Sbjct: 171 KRAKEESVDYLLLDTAGRLHVDEELMKELQEIKEVTNPSEILYVADAMQGQTALETAKTF 230
Query: 560 NNAMADHSLSDNPHLIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGTGQTYTDLK 617
+ + + G+V+TK D D + G A+S+ + G PI F+G G+ D++
Sbjct: 231 HERLG----------LTGVVITKMDG-DARGGLALSVKEVLGVPIKFIGVGEKIEDIE 277
>sp|P49972|SR542_SOLLC Signal recognition particle 54 kDa protein 2 OS=Solanum
lycopersicum PE=2 SV=1
Length = 499
Score = 101 bits (252), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 74/319 (23%), Positives = 144/319 (45%), Gaps = 36/319 (11%)
Query: 315 SLFRGLVGSKNLTKSDMKPILEKMKDHLIAKNVAADIAVKLCDSVALKLEGKV----LGT 370
S+ R L N T D K +L + + + + AD+ KL + ++ V L
Sbjct: 9 SISRALQQMSNATIIDEK-VLNECLNEITRALLQADVQFKLVRDMTTNIKKIVNLDDLAA 67
Query: 371 FESVANTVKSTLTDALVQILSPKRRVDILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAK 430
+ ++ + + L +IL P + K+G+P ++ F G+ G GK+T K
Sbjct: 68 GHNKRRIIQQAVFNELCKILDPGK-------PSFTPKKGKPSIVMFVGLQGSGKTTTCTK 120
Query: 431 ICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHPAAKHGGREMVQLFEKGYGKD 490
++ + + DTFRAGA +QL+ ++ + + + D
Sbjct: 121 YAYYHQKKGWKPALVCADTFRAGAFDQLK-------------QNATKAKIPFYGSYTESD 167
Query: 491 PAEIAFRAISHARDMHIDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGN 550
P +IA + + + D++++DT+GR + L + ++ + +PDL++FV ++ +G
Sbjct: 168 PVKIAVDGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVAEATKPDLVIFVMDSSIGQ 227
Query: 551 EAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGTG 610
A DQ F ++A + +++TK D K G A+S T P++F+GTG
Sbjct: 228 AAFDQAQAFKQSVA----------VGAVIVTKMDG-HAKGGGALSAVAATKSPVIFIGTG 276
Query: 611 QTYTDLKSLNAKAVVNALM 629
+ + + + K V+ L+
Sbjct: 277 EHMDEFEVFDVKPFVSRLL 295
>sp|P49969|SR542_HORVU Signal recognition particle 54 kDa protein 2 OS=Hordeum vulgare
GN=SRP54-2 PE=2 SV=1
Length = 497
Score = 101 bits (251), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 58/223 (26%), Positives = 106/223 (47%), Gaps = 24/223 (10%)
Query: 407 KQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLC 466
K+G+P V+ F G+ G GK+T K ++ + DTFRAGA +QL+
Sbjct: 97 KKGKPSVVMFVGLQGSGKTTTCTKYAYYHQRKGFKPSLVCADTFRAGAFDQLK------- 149
Query: 467 SLHPAAKHGGREMVQLFEKGYGKDPAEIAFRAISHARDMHIDVVLIDTAGRMQDNEPLMR 526
++ + + + DP +IA + R + D+++IDT+GR + L
Sbjct: 150 ------QNATKAKIPFYGSYMESDPVKIAVEGLERFRKENSDLIIIDTSGRHKQEAALFE 203
Query: 527 ALAKLVKVNQPDLLLFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTI 586
+ ++ + +PDL++FV + +G A DQ F + + + +++TK D
Sbjct: 204 EMRQVAEATKPDLVIFVMDGSIGQAAFDQAQAFKQSAS----------VGAVIITKLDG- 252
Query: 587 DDKVGAAISMTYITGQPIVFVGTGQTYTDLKSLNAKAVVNALM 629
K G A+S T P++F+GTG+ + + + K V+ L+
Sbjct: 253 HAKGGGALSAVAATKSPVIFIGTGEHIDEFEIFDVKPFVSRLL 295
>sp|P49968|SR541_HORVU Signal recognition particle 54 kDa protein 1 OS=Hordeum vulgare
GN=SRP54-1 PE=2 SV=1
Length = 497
Score = 101 bits (251), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 58/223 (26%), Positives = 106/223 (47%), Gaps = 24/223 (10%)
Query: 407 KQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLC 466
K+G+P V+ F G+ G GK+T K ++ + DTFRAGA +QL+
Sbjct: 97 KKGKPSVVMFVGLQGSGKTTTCTKYAYYHQRKGFKPSLVCADTFRAGAFDQLK------- 149
Query: 467 SLHPAAKHGGREMVQLFEKGYGKDPAEIAFRAISHARDMHIDVVLIDTAGRMQDNEPLMR 526
++ + + + DP +IA + R + D+++IDT+GR + L
Sbjct: 150 ------QNATKAKIPFYGSYMESDPVKIAVEGLERFRKENSDLIIIDTSGRHKQEAALFE 203
Query: 527 ALAKLVKVNQPDLLLFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTI 586
+ ++ + +PDL++FV + +G A DQ F + + + +++TK D
Sbjct: 204 EMRQVAEATKPDLVIFVMDGSIGQAAFDQAQAFKQSAS----------VGAVIITKLDG- 252
Query: 587 DDKVGAAISMTYITGQPIVFVGTGQTYTDLKSLNAKAVVNALM 629
K G A+S T P++F+GTG+ + + + K V+ L+
Sbjct: 253 HAKGGGALSAVAATKSPVIFIGTGEHIDEFEIFDVKPFVSRLL 295
>sp|O32861|FTSY_MYCHP Signal recognition particle receptor FtsY OS=Mycoplasma hominis
(strain ATCC 23114 / NBRC 14850 / NCTC 10111 / PG21)
GN=ftsY PE=3 SV=1
Length = 351
Score = 101 bits (251), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 87/290 (30%), Positives = 134/290 (46%), Gaps = 33/290 (11%)
Query: 347 VAADIAVKLCDSVALKLEGKVLGTFESVANTVKSTLTDALVQILSPKRRVDILRDALEAK 406
+ +DI++KL + + + +V + + + D L I + VD +
Sbjct: 85 IMSDISIKLVQIIINECKKEVRNENITDPKLINEIIADKLFTIYTSNSVVDTTLNI---- 140
Query: 407 KQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLC 466
K R V+ GVNG GK+T+++KI LI+ VLIAA DTFRA AVEQL
Sbjct: 141 KDNRLNVILVVGVNGSGKTTSISKIAKKLIDEGKKVLIAAGDTFRAAAVEQLEIW----- 195
Query: 467 SLHPAAKHGGREMVQLFEKGYGKDPAEIAFRAISHARDMHIDVVLIDTAGRMQDNEPLMR 526
AK G ++V E DPA + +RAI A+ D++++DTAGR+Q+ LM
Sbjct: 196 -----AKRVGADIVTPNENEV--DPAAVVYRAIDIAKSKKYDILIVDTAGRLQNKVNLMN 248
Query: 527 ALAKLVKV------NQPDLLLFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVL 580
LAK+ +V + P L V +A G V Q F + + GI+L
Sbjct: 249 ELAKINRVLASKIPDAPHESLLVLDATTGQNGVIQARVFKESTP----------LTGIIL 298
Query: 581 TKFDTIDDKVGAAISMTYITGQPIVFVGTGQTYTDLKSLNAKAVVNALMK 630
TK D K G +++ G + ++G G+ DL + + + L K
Sbjct: 299 TKMDG-TSKGGIVLTIKDEIGLFVKYIGLGEKVDDLAEFDLDSYIYGLTK 347
>sp|O15821|SRP54_ENTHI Signal recognition particle 54 kDa protein OS=Entamoeba histolytica
PE=3 SV=1
Length = 487
Score = 101 bits (251), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 66/252 (26%), Positives = 121/252 (48%), Gaps = 31/252 (12%)
Query: 378 VKSTLTDALVQILSPKRRVDILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIE 437
+K ++ + L+ ++ PK +A + KK G+ V+ G+ G GK+T + K+ +
Sbjct: 75 IKDSVFEELINLVDPKT------EAFKPKK-GKTCVLMMVGLQGAGKTTTITKLALYYKN 127
Query: 438 NNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHPAAKHGGREMVQLFEKGYGKDPAEIAFR 497
+ DTFRAGA EQL+ + AK G V F DP ++A
Sbjct: 128 RGYKPAVVGADTFRAGAYEQLQMN----------AKRAG---VPFFGIKEESDPVKVASE 174
Query: 498 AISHARDMHIDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQLV 557
+ R D++L+DT+GR + ++ L + + + +PD ++FV + +G A Q
Sbjct: 175 GVRTFRKEKNDIILVDTSGRHKQDKELFKEMQSVRDAIKPDSIIFVMDGAIGQAAFGQAK 234
Query: 558 KFNNAMADHSLSDNPHLIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGTGQTYTDLK 617
F +A+ + +++TK D + G A+S T PI+F+GTG+ +++
Sbjct: 235 AFKDAVE----------VGSVIITKLDGHSNG-GGALSAVAATKSPIIFIGTGEKVNEIE 283
Query: 618 SLNAKAVVNALM 629
+A++ V L+
Sbjct: 284 EFDAESFVRQLL 295
>sp|Q8G736|FTSY_BIFLO Signal recognition particle receptor FtsY OS=Bifidobacterium longum
(strain NCC 2705) GN=ftsY PE=3 SV=1
Length = 420
Score = 100 bits (250), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 102/348 (29%), Positives = 166/348 (47%), Gaps = 50/348 (14%)
Query: 291 EDVRAETSHVSAK--KANGKANKGMFSLFRGLVGSKNLTKSDMKPILEKMKDHLIAKNVA 348
E V + + + AK K+ K +F + NL+++D E ++D L+ +V
Sbjct: 113 ESVGSRLTRLKAKLAKSGNPFGKALFDIL----AKDNLSEADW----EDVEDTLLLADVG 164
Query: 349 ADIAVKLCDSVALKLEGKVLGTFESVANTVKSTLTDALVQILSPKRRVDILRDALEAKKQ 408
AD + +L D L+ + ++ G + V++TL + L+ ++ R D L A+K
Sbjct: 165 ADASAQLVDD--LRTDARITGKADPA--EVRATLKEKLLDLVG--RDTD---RRLNAEKP 215
Query: 409 G--RPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLC 466
G +P V+ GVNG GK+T K+ + N V++ A DTFRA A +QL T
Sbjct: 216 GAAKPSVIIMVGVNGTGKTTTAGKLARLFVAENKQVMMGAADTFRAAAADQLETW----- 270
Query: 467 SLHPAAKHGGREMVQLFEKGY-GKDPAEIAFRAISHARDMHIDVVLIDTAGRMQDNEPLM 525
G R V + G DPA +AF A + A++ + DV++IDTAGR+Q+ LM
Sbjct: 271 --------GARVNVPVVRSDKDGADPASVAFEASAKAKEANADVLIIDTAGRLQNKSNLM 322
Query: 526 RALAKLVKVNQPDL----LLFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLT 581
L K+ +V + +L +L V +A G + Q F A+ I G+VL+
Sbjct: 323 DELGKIRRVTEKNLPVDEVLLVLDATTGQNGMAQAKVFAEAIG----------ITGVVLS 372
Query: 582 KFDTIDDKVGAAISMTYITGQPIVFVGTGQTYTDLKSLNAKAVVNALM 629
K D K G +S+ G P+ VG G+ DL + + V+ ++
Sbjct: 373 KLDG-SAKGGIVVSVQKELGVPVKLVGLGEGPDDLAPFDPEGFVDGIL 419
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.133 0.373
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 230,086,847
Number of Sequences: 539616
Number of extensions: 10006038
Number of successful extensions: 45495
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 308
Number of HSP's that attempted gapping in prelim test: 44259
Number of HSP's gapped (non-prelim): 1087
length of query: 630
length of database: 191,569,459
effective HSP length: 124
effective length of query: 506
effective length of database: 124,657,075
effective search space: 63076479950
effective search space used: 63076479950
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 64 (29.3 bits)