Query psy11993
Match_columns 630
No_of_seqs 379 out of 2838
Neff 6.5
Searched_HMMs 46136
Date Fri Aug 16 15:52:37 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11993.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11993hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0781|consensus 100.0 3E-115 6E-120 919.2 43.1 582 1-630 1-587 (587)
2 COG0552 FtsY Signal recognitio 100.0 3.9E-52 8.4E-57 430.3 27.4 277 324-630 58-340 (340)
3 COG0541 Ffh Signal recognition 100.0 1.5E-49 3.2E-54 421.8 31.3 289 311-630 7-295 (451)
4 TIGR01425 SRP54_euk signal rec 100.0 3E-46 6.5E-51 405.0 30.4 289 311-630 7-295 (429)
5 PRK14974 cell division protein 100.0 1.9E-44 4.1E-49 382.1 31.3 289 311-630 47-335 (336)
6 KOG0780|consensus 100.0 2.5E-44 5.5E-49 373.4 26.1 288 312-630 9-296 (483)
7 PRK10867 signal recognition pa 100.0 2.9E-43 6.3E-48 383.7 30.5 289 311-630 7-296 (433)
8 PRK00771 signal recognition pa 100.0 4.4E-42 9.5E-47 375.2 30.9 286 311-630 3-288 (437)
9 TIGR00959 ffh signal recogniti 100.0 7.7E-42 1.7E-46 372.4 31.2 289 311-630 6-295 (428)
10 PF04086 SRP-alpha_N: Signal r 100.0 2.6E-44 5.6E-49 374.1 8.7 226 26-251 1-241 (279)
11 PRK10416 signal recognition pa 100.0 2.1E-41 4.6E-46 357.5 30.0 281 311-630 29-315 (318)
12 TIGR00064 ftsY signal recognit 100.0 8.7E-40 1.9E-44 338.7 27.9 265 330-629 2-272 (272)
13 PF00448 SRP54: SRP54-type pro 100.0 1.4E-38 2.9E-43 314.9 20.8 196 411-630 1-196 (196)
14 PRK11889 flhF flagellar biosyn 100.0 1E-35 2.2E-40 316.4 27.1 258 329-630 174-434 (436)
15 PRK12724 flagellar biosynthesi 100.0 5.2E-35 1.1E-39 314.8 25.3 266 323-629 145-415 (432)
16 PRK14723 flhF flagellar biosyn 100.0 6.3E-35 1.4E-39 333.3 26.8 253 332-630 124-380 (767)
17 PRK12726 flagellar biosynthesi 100.0 6.2E-34 1.3E-38 302.1 26.3 252 337-630 146-399 (407)
18 PRK12723 flagellar biosynthesi 100.0 7.3E-34 1.6E-38 306.4 27.3 256 332-630 108-369 (388)
19 PRK06995 flhF flagellar biosyn 100.0 9.3E-34 2E-38 311.7 27.1 252 331-630 194-448 (484)
20 PRK06731 flhF flagellar biosyn 100.0 3.9E-33 8.5E-38 287.8 22.0 259 327-630 7-268 (270)
21 PRK14722 flhF flagellar biosyn 100.0 3E-32 6.4E-37 291.9 26.7 263 331-630 72-338 (374)
22 COG1419 FlhF Flagellar GTP-bin 100.0 1.3E-32 2.9E-37 292.5 23.7 189 412-630 204-395 (407)
23 PRK05703 flhF flagellar biosyn 100.0 5.6E-32 1.2E-36 296.1 26.6 256 327-630 155-414 (424)
24 PRK14721 flhF flagellar biosyn 100.0 1.1E-31 2.5E-36 291.3 25.0 252 330-630 129-383 (420)
25 PRK12727 flagellar biosynthesi 100.0 3.3E-28 7.2E-33 267.7 25.8 249 329-629 288-540 (559)
26 cd03115 SRP The signal recogni 99.9 4.2E-22 9.2E-27 192.4 17.7 173 412-608 1-173 (173)
27 COG1126 GlnQ ABC-type polar am 99.8 5.2E-20 1.1E-24 181.0 14.4 202 386-613 8-215 (240)
28 COG4555 NatA ABC-type Na+ tran 99.8 8.5E-20 1.8E-24 177.4 9.0 170 385-567 6-180 (245)
29 COG1125 OpuBA ABC-type proline 99.8 1.6E-19 3.5E-24 181.0 11.1 219 385-630 6-237 (309)
30 COG1127 Ttg2A ABC-type transpo 99.8 7.5E-20 1.6E-24 182.3 8.0 174 396-582 21-204 (263)
31 COG1136 SalX ABC-type antimicr 99.8 6.9E-19 1.5E-23 176.5 13.3 193 396-611 18-219 (226)
32 COG1120 FepC ABC-type cobalami 99.8 4.7E-19 1E-23 181.0 12.0 196 396-614 15-219 (258)
33 COG3842 PotA ABC-type spermidi 99.8 3.6E-19 7.9E-24 189.1 9.0 214 386-627 11-235 (352)
34 COG2884 FtsE Predicted ATPase 99.8 3.5E-18 7.5E-23 164.9 14.8 204 386-614 7-217 (223)
35 COG1131 CcmA ABC-type multidru 99.8 1.1E-18 2.3E-23 183.3 12.0 173 396-582 18-195 (293)
36 COG1117 PstB ABC-type phosphat 99.8 3.6E-18 7.7E-23 167.6 12.7 173 396-582 20-206 (253)
37 COG1116 TauB ABC-type nitrate/ 99.8 1.6E-18 3.4E-23 174.6 9.7 172 396-585 16-193 (248)
38 COG3839 MalK ABC-type sugar tr 99.8 1.8E-18 4E-23 182.9 9.9 170 398-582 18-192 (338)
39 COG1135 AbcC ABC-type metal io 99.7 1.8E-17 3.9E-22 170.6 12.8 190 395-613 18-221 (339)
40 PRK13537 nodulation ABC transp 99.7 1.4E-17 3E-22 175.9 11.8 172 396-582 20-196 (306)
41 TIGR01188 drrA daunorubicin re 99.7 3.2E-17 7E-22 172.7 12.2 171 397-582 7-182 (302)
42 COG4586 ABC-type uncharacteriz 99.7 7E-17 1.5E-21 163.4 12.3 211 380-614 20-237 (325)
43 PRK13536 nodulation factor exp 99.7 4.6E-17 9.9E-22 174.4 11.2 171 397-582 55-230 (340)
44 TIGR00960 3a0501s02 Type II (G 99.7 8.5E-17 1.8E-21 160.9 11.5 173 397-582 17-196 (216)
45 TIGR01166 cbiO cobalt transpor 99.7 9.9E-17 2.1E-21 157.4 11.3 173 397-582 6-185 (190)
46 COG4175 ProV ABC-type proline/ 99.7 3.7E-17 8E-22 168.3 8.6 200 398-613 43-252 (386)
47 COG1121 ZnuC ABC-type Mn/Zn tr 99.7 3.3E-17 7.1E-22 166.8 8.1 169 397-582 18-197 (254)
48 cd03225 ABC_cobalt_CbiO_domain 99.7 1.4E-16 3E-21 158.6 12.4 172 397-582 15-192 (211)
49 COG0411 LivG ABC-type branched 99.7 6.3E-17 1.4E-21 162.1 9.8 204 386-614 10-230 (250)
50 TIGR02673 FtsE cell division A 99.7 1.3E-16 2.8E-21 159.2 11.8 173 397-582 16-195 (214)
51 cd03218 ABC_YhbG The ABC trans 99.7 1.3E-16 2.7E-21 161.3 11.3 194 397-613 14-212 (232)
52 TIGR03522 GldA_ABC_ATP gliding 99.7 1.3E-16 2.8E-21 168.1 11.8 170 397-582 16-190 (301)
53 TIGR02314 ABC_MetN D-methionin 99.7 9.4E-17 2E-21 172.0 10.9 175 396-582 18-199 (343)
54 TIGR03608 L_ocin_972_ABC putat 99.7 1.4E-16 3.1E-21 157.9 11.4 173 397-582 12-192 (206)
55 COG1137 YhbG ABC-type (unclass 99.7 4E-17 8.7E-22 158.7 7.0 203 384-612 8-217 (243)
56 COG1118 CysA ABC-type sulfate/ 99.7 7.5E-17 1.6E-21 165.8 9.3 187 396-610 15-214 (345)
57 cd03261 ABC_Org_Solvent_Resist 99.7 1.3E-16 2.9E-21 161.6 10.9 174 397-582 14-195 (235)
58 TIGR01288 nodI ATP-binding ABC 99.7 1.5E-16 3.3E-21 167.7 11.7 171 397-582 18-193 (303)
59 COG4152 ABC-type uncharacteriz 99.7 1E-16 2.2E-21 160.0 9.5 207 385-608 7-229 (300)
60 cd03226 ABC_cobalt_CbiO_domain 99.7 1E-16 2.3E-21 159.1 9.5 168 397-582 14-184 (205)
61 TIGR01186 proV glycine betaine 99.7 1.1E-16 2.4E-21 172.5 10.4 174 397-582 7-188 (363)
62 TIGR03499 FlhF flagellar biosy 99.7 1.2E-15 2.6E-20 159.5 17.8 150 330-516 131-282 (282)
63 cd03255 ABC_MJ0796_Lo1CDE_FtsE 99.7 2.1E-16 4.5E-21 158.2 11.6 174 397-582 18-199 (218)
64 cd03263 ABC_subfamily_A The AB 99.7 2.2E-16 4.9E-21 158.2 11.7 170 397-582 16-190 (220)
65 PRK13637 cbiO cobalt transport 99.7 1.9E-16 4E-21 165.8 11.5 174 397-582 21-203 (287)
66 COG1122 CbiO ABC-type cobalt t 99.7 1.9E-16 4E-21 161.0 11.1 197 396-614 17-219 (235)
67 cd03265 ABC_DrrA DrrA is the A 99.7 2.2E-16 4.7E-21 158.5 11.5 193 397-613 14-211 (220)
68 cd03292 ABC_FtsE_transporter F 99.7 2.8E-16 6.1E-21 156.7 11.8 173 397-582 15-194 (214)
69 PRK10908 cell division protein 99.7 2.8E-16 6.1E-21 157.9 11.8 173 397-582 16-195 (222)
70 PRK13644 cbiO cobalt transport 99.7 2.4E-16 5.1E-21 164.0 11.6 173 397-582 16-194 (274)
71 cd03224 ABC_TM1139_LivF_branch 99.7 1.8E-16 3.9E-21 159.0 10.4 194 397-613 14-211 (222)
72 PRK11650 ugpC glycerol-3-phosp 99.7 1.3E-16 2.8E-21 171.9 9.9 171 397-582 18-193 (356)
73 cd03259 ABC_Carb_Solutes_like 99.7 1.9E-16 4E-21 158.1 10.3 171 397-582 14-189 (213)
74 cd03266 ABC_NatA_sodium_export 99.7 2.8E-16 6.2E-21 157.2 11.4 171 397-582 19-194 (218)
75 TIGR03265 PhnT2 putative 2-ami 99.7 1.6E-16 3.5E-21 170.9 10.3 171 397-582 18-193 (353)
76 PRK11432 fbpC ferric transport 99.7 1.7E-16 3.8E-21 170.6 10.5 171 397-582 20-195 (351)
77 cd03219 ABC_Mj1267_LivG_branch 99.7 2.8E-16 6.1E-21 159.1 11.2 194 397-613 14-222 (236)
78 TIGR03410 urea_trans_UrtE urea 99.7 2.9E-16 6.3E-21 158.5 11.2 174 397-582 14-190 (230)
79 PRK11629 lolD lipoprotein tran 99.7 4.6E-16 1E-20 157.6 12.2 174 397-582 23-204 (233)
80 PRK13650 cbiO cobalt transport 99.7 4E-16 8.7E-21 162.6 11.8 173 397-582 21-199 (279)
81 cd03264 ABC_drug_resistance_li 99.7 5.1E-16 1.1E-20 154.7 11.9 169 397-582 14-187 (211)
82 PRK11153 metN DL-methionine tr 99.7 3.1E-16 6.6E-21 168.3 10.9 175 396-582 18-199 (343)
83 PRK13647 cbiO cobalt transport 99.7 4E-16 8.7E-21 162.2 11.4 172 397-582 19-196 (274)
84 PRK13635 cbiO cobalt transport 99.7 4.1E-16 8.8E-21 162.6 11.3 173 397-582 21-199 (279)
85 cd03262 ABC_HisP_GlnQ_permease 99.7 7E-16 1.5E-20 153.7 12.4 173 397-582 14-193 (213)
86 PRK13641 cbiO cobalt transport 99.7 4.6E-16 9.9E-21 162.8 11.4 173 397-582 21-203 (287)
87 COG3638 ABC-type phosphate/pho 99.7 2E-16 4.4E-21 157.6 8.2 174 396-582 17-206 (258)
88 TIGR03258 PhnT 2-aminoethylpho 99.6 3.5E-16 7.7E-21 168.8 10.5 171 397-582 19-197 (362)
89 cd03269 ABC_putative_ATPase Th 99.6 4.4E-16 9.5E-21 155.1 10.2 168 397-582 14-186 (210)
90 TIGR02211 LolD_lipo_ex lipopro 99.6 5.9E-16 1.3E-20 155.3 11.2 174 397-582 19-200 (221)
91 cd03268 ABC_BcrA_bacitracin_re 99.6 3.6E-16 7.8E-21 155.5 9.5 169 397-582 14-184 (208)
92 TIGR03864 PQQ_ABC_ATP ABC tran 99.6 6.5E-16 1.4E-20 156.8 11.2 172 397-582 15-191 (236)
93 cd03258 ABC_MetN_methionine_tr 99.6 8.5E-16 1.9E-20 155.4 12.0 174 397-582 19-199 (233)
94 PRK09452 potA putrescine/sperm 99.6 4.1E-16 8.9E-21 169.0 10.2 171 397-582 28-203 (375)
95 cd03260 ABC_PstB_phosphate_tra 99.6 7.7E-16 1.7E-20 155.1 11.6 172 397-582 14-198 (227)
96 cd03256 ABC_PhnC_transporter A 99.6 6E-16 1.3E-20 157.1 10.7 174 397-582 15-203 (241)
97 cd03301 ABC_MalK_N The N-termi 99.6 4.7E-16 1E-20 155.1 9.7 171 397-582 14-189 (213)
98 cd03293 ABC_NrtD_SsuB_transpor 99.6 4.5E-16 9.7E-21 156.2 9.6 168 397-582 18-190 (220)
99 PRK09536 btuD corrinoid ABC tr 99.6 3.2E-16 6.8E-21 171.1 9.1 172 397-582 17-197 (402)
100 TIGR02315 ABC_phnC phosphonate 99.6 5.4E-16 1.2E-20 157.7 10.2 174 397-582 16-204 (243)
101 PRK13631 cbiO cobalt transport 99.6 7.4E-16 1.6E-20 163.8 11.6 173 397-582 40-234 (320)
102 PRK11000 maltose/maltodextrin 99.6 4.6E-16 1E-20 168.4 10.1 171 397-582 17-192 (369)
103 PRK13643 cbiO cobalt transport 99.6 8.9E-16 1.9E-20 160.8 11.9 173 397-582 20-202 (288)
104 cd03235 ABC_Metallic_Cations A 99.6 3.9E-16 8.4E-21 155.8 8.7 167 397-582 13-190 (213)
105 PRK13538 cytochrome c biogenes 99.6 5.8E-16 1.3E-20 153.8 10.0 171 397-582 15-187 (204)
106 COG1124 DppF ABC-type dipeptid 99.6 1.2E-15 2.6E-20 152.9 12.1 196 397-614 21-222 (252)
107 COG4559 ABC-type hemin transpo 99.6 1.4E-15 3.1E-20 149.2 12.2 168 397-568 15-189 (259)
108 PRK10895 lipopolysaccharide AB 99.6 9.9E-16 2.2E-20 155.8 11.7 173 397-582 17-195 (241)
109 PRK10070 glycine betaine trans 99.6 9.5E-16 2.1E-20 167.2 12.0 174 397-582 42-223 (400)
110 cd03295 ABC_OpuCA_Osmoprotecti 99.6 8.5E-16 1.8E-20 156.5 10.9 173 397-582 15-194 (242)
111 PRK13651 cobalt transporter AT 99.6 9.8E-16 2.1E-20 161.8 11.7 173 397-582 21-223 (305)
112 cd03257 ABC_NikE_OppD_transpor 99.6 9.9E-16 2.1E-20 154.1 10.9 174 397-582 19-204 (228)
113 PRK11607 potG putrescine trans 99.6 6.9E-16 1.5E-20 167.4 10.4 171 397-582 33-208 (377)
114 PRK13652 cbiO cobalt transport 99.6 1.2E-15 2.6E-20 158.8 11.8 173 397-582 18-196 (277)
115 PRK13634 cbiO cobalt transport 99.6 1E-15 2.2E-20 160.5 11.3 174 397-582 21-204 (290)
116 PRK10247 putative ABC transpor 99.6 1.2E-15 2.7E-20 153.8 11.5 173 397-582 21-196 (225)
117 PRK13640 cbiO cobalt transport 99.6 1.4E-15 2.9E-20 158.9 12.0 173 397-582 21-202 (282)
118 PRK10851 sulfate/thiosulfate t 99.6 7.6E-16 1.6E-20 165.8 10.3 171 397-582 16-195 (353)
119 PRK13646 cbiO cobalt transport 99.6 1.3E-15 2.8E-20 159.4 11.6 174 397-582 21-204 (286)
120 PRK10584 putative ABC transpor 99.6 1.6E-15 3.5E-20 152.9 11.9 174 397-582 24-205 (228)
121 PRK13636 cbiO cobalt transport 99.6 1.3E-15 2.8E-20 159.2 11.6 174 397-582 20-200 (283)
122 PRK09493 glnQ glutamine ABC tr 99.6 1.5E-15 3.3E-20 154.4 11.8 173 397-582 15-194 (240)
123 cd03267 ABC_NatA_like Similar 99.6 1.4E-15 3.1E-20 154.6 11.5 173 396-582 34-212 (236)
124 cd03296 ABC_CysA_sulfate_impor 99.6 7.8E-16 1.7E-20 156.5 9.6 171 397-582 16-195 (239)
125 TIGR01189 ccmA heme ABC export 99.6 9.3E-16 2E-20 151.6 9.9 171 397-583 14-186 (198)
126 PRK13649 cbiO cobalt transport 99.6 1.2E-15 2.7E-20 158.8 11.2 173 397-582 21-203 (280)
127 PRK14247 phosphate ABC transpo 99.6 2E-15 4.2E-20 154.5 12.2 171 397-582 17-203 (250)
128 COG0410 LivF ABC-type branched 99.6 5.5E-16 1.2E-20 154.3 7.8 186 396-599 16-206 (237)
129 TIGR03415 ABC_choXWV_ATP choli 99.6 1.4E-15 3.1E-20 164.8 11.8 195 396-613 37-244 (382)
130 TIGR03411 urea_trans_UrtD urea 99.6 1.8E-15 3.9E-20 153.9 11.8 172 397-582 16-200 (242)
131 TIGR00972 3a0107s01c2 phosphat 99.6 2.3E-15 5E-20 153.8 12.4 172 397-582 15-201 (247)
132 cd03294 ABC_Pro_Gly_Bertaine T 99.6 1.8E-15 3.9E-20 156.9 11.7 183 385-582 29-219 (269)
133 PRK13633 cobalt transporter AT 99.6 1.6E-15 3.5E-20 158.2 11.4 174 397-582 24-203 (280)
134 PRK13638 cbiO cobalt transport 99.6 1.9E-15 4E-20 156.8 11.7 173 397-582 15-194 (271)
135 COG4181 Predicted ABC-type tra 99.6 2.3E-15 5.1E-20 143.2 10.9 186 385-582 11-205 (228)
136 cd03231 ABC_CcmA_heme_exporter 99.6 1.6E-15 3.4E-20 150.5 10.3 169 397-583 14-184 (201)
137 KOG0058|consensus 99.6 2.3E-15 5E-20 169.5 12.7 176 389-582 473-661 (716)
138 PRK13539 cytochrome c biogenes 99.6 1.7E-15 3.7E-20 150.9 10.2 168 397-582 16-185 (207)
139 PRK13548 hmuV hemin importer A 99.6 2.3E-15 5E-20 155.1 11.5 178 397-582 16-199 (258)
140 TIGR02868 CydC thiol reductant 99.6 9.3E-16 2E-20 173.3 9.2 167 397-582 349-527 (529)
141 PRK14242 phosphate transporter 99.6 3.7E-15 8E-20 152.7 12.8 172 397-582 20-206 (253)
142 PRK11614 livF leucine/isoleuci 99.6 1.5E-15 3.2E-20 154.1 9.7 173 397-582 19-195 (237)
143 PRK13639 cbiO cobalt transport 99.6 2.5E-15 5.4E-20 156.3 11.5 173 397-582 16-195 (275)
144 PRK10744 pstB phosphate transp 99.6 3.1E-15 6.8E-20 154.1 12.1 193 397-613 27-234 (260)
145 PRK13632 cbiO cobalt transport 99.6 2.3E-15 5E-20 156.2 11.0 173 397-582 23-201 (271)
146 PRK14273 phosphate ABC transpo 99.6 3.9E-15 8.4E-20 152.8 12.3 193 397-613 21-228 (254)
147 PRK11264 putative amino-acid A 99.6 4E-15 8.6E-20 152.1 12.3 173 397-582 17-202 (250)
148 cd03215 ABC_Carb_Monos_II This 99.6 1.5E-15 3.4E-20 148.2 8.7 144 398-582 15-162 (182)
149 PRK15079 oligopeptide ABC tran 99.6 2.7E-15 5.8E-20 160.2 11.1 175 396-582 34-220 (331)
150 PRK13540 cytochrome c biogenes 99.6 3.1E-15 6.8E-20 148.1 10.7 169 397-582 15-185 (200)
151 PRK14268 phosphate ABC transpo 99.6 4E-15 8.6E-20 153.2 11.8 172 397-582 26-211 (258)
152 PRK11248 tauB taurine transpor 99.6 2.6E-15 5.6E-20 154.6 10.4 168 397-582 15-187 (255)
153 PRK11831 putative ABC transpor 99.6 3E-15 6.6E-20 155.1 10.8 174 397-582 21-202 (269)
154 PRK13543 cytochrome c biogenes 99.6 3.1E-15 6.7E-20 149.8 10.4 169 397-582 25-195 (214)
155 COG4133 CcmA ABC-type transpor 99.6 5.7E-15 1.2E-19 142.7 11.7 161 397-568 16-178 (209)
156 TIGR02324 CP_lyasePhnL phospho 99.6 6.5E-15 1.4E-19 148.1 12.7 173 397-582 22-207 (224)
157 TIGR02769 nickel_nikE nickel i 99.6 3.9E-15 8.4E-20 153.9 11.3 174 397-582 25-209 (265)
158 TIGR03005 ectoine_ehuA ectoine 99.6 3.7E-15 8E-20 152.7 11.0 174 397-582 14-205 (252)
159 COG4525 TauB ABC-type taurine 99.6 4.1E-15 8.9E-20 144.3 10.6 169 396-582 18-191 (259)
160 PRK14235 phosphate transporter 99.6 5.8E-15 1.3E-19 152.9 12.4 172 397-582 33-220 (267)
161 TIGR01978 sufC FeS assembly AT 99.6 2.9E-15 6.4E-20 152.2 10.0 173 397-582 14-202 (243)
162 PRK14259 phosphate ABC transpo 99.6 4.2E-15 9.2E-20 154.1 11.4 172 397-582 27-211 (269)
163 PRK11124 artP arginine transpo 99.6 5.5E-15 1.2E-19 150.5 11.9 173 397-582 16-199 (242)
164 PRK14269 phosphate ABC transpo 99.6 6.1E-15 1.3E-19 150.7 12.3 171 397-582 16-199 (246)
165 PRK10619 histidine/lysine/argi 99.6 5.4E-15 1.2E-19 152.0 11.9 173 397-582 19-210 (257)
166 PRK13648 cbiO cobalt transport 99.6 5.4E-15 1.2E-19 153.2 11.9 173 397-582 23-201 (269)
167 PRK10575 iron-hydroxamate tran 99.6 2.5E-15 5.4E-20 155.4 9.3 173 397-582 25-206 (265)
168 PRK13645 cbiO cobalt transport 99.6 3.3E-15 7.1E-20 156.5 10.2 174 397-582 25-209 (289)
169 PRK13642 cbiO cobalt transport 99.6 4.3E-15 9.3E-20 154.7 10.9 173 397-582 21-199 (277)
170 PRK11300 livG leucine/isoleuci 99.6 5.2E-15 1.1E-19 151.7 11.3 195 397-613 19-233 (255)
171 PRK11174 cysteine/glutathione 99.6 3.1E-15 6.7E-20 171.1 10.5 167 397-582 364-542 (588)
172 PRK14240 phosphate transporter 99.6 7.3E-15 1.6E-19 150.3 12.2 172 397-582 17-203 (250)
173 PRK14267 phosphate ABC transpo 99.6 6.5E-15 1.4E-19 150.9 11.8 171 397-582 18-206 (253)
174 PRK14250 phosphate ABC transpo 99.6 3E-15 6.5E-20 152.6 9.2 172 397-582 17-190 (241)
175 PRK10762 D-ribose transporter 99.6 4E-15 8.6E-20 167.3 10.9 173 397-582 18-199 (501)
176 PRK14274 phosphate ABC transpo 99.6 8.8E-15 1.9E-19 150.6 12.5 172 397-582 26-212 (259)
177 TIGR02770 nickel_nikD nickel i 99.6 5.3E-15 1.2E-19 149.6 10.6 170 398-582 1-184 (230)
178 PRK14241 phosphate transporter 99.6 7.5E-15 1.6E-19 151.1 11.9 172 397-582 18-205 (258)
179 COG4598 HisP ABC-type histidin 99.6 1.3E-14 2.9E-19 139.1 12.5 202 384-611 10-229 (256)
180 cd03244 ABCC_MRP_domain2 Domai 99.6 4.1E-15 8.8E-20 149.2 9.5 167 397-582 18-196 (221)
181 cd03252 ABCC_Hemolysin The ABC 99.6 2.8E-15 6.2E-20 152.0 8.4 188 397-613 16-215 (237)
182 KOG0055|consensus 99.6 4.5E-15 9.8E-20 175.5 11.1 194 391-613 360-566 (1228)
183 PRK14270 phosphate ABC transpo 99.6 1.1E-14 2.4E-19 149.2 12.5 193 397-613 18-225 (251)
184 PRK11288 araG L-arabinose tran 99.6 8.4E-15 1.8E-19 164.7 12.7 208 397-627 267-491 (501)
185 PRK11308 dppF dipeptide transp 99.6 6.1E-15 1.3E-19 157.3 11.0 175 396-582 28-213 (327)
186 TIGR01184 ntrCD nitrate transp 99.6 9.5E-15 2.1E-19 147.9 11.9 166 399-582 1-173 (230)
187 cd03234 ABCG_White The White s 99.6 7.5E-15 1.6E-19 148.1 10.7 171 396-583 20-202 (226)
188 cd03245 ABCC_bacteriocin_expor 99.6 4.5E-15 9.8E-20 148.7 9.0 168 397-582 18-197 (220)
189 TIGR03873 F420-0_ABC_ATP propo 99.6 8.7E-15 1.9E-19 150.4 11.3 172 397-582 15-195 (256)
190 cd03300 ABC_PotA_N PotA is an 99.6 8.3E-15 1.8E-19 148.4 11.0 171 397-582 14-189 (232)
191 PRK14253 phosphate ABC transpo 99.6 1.6E-14 3.4E-19 147.8 13.1 172 397-582 17-202 (249)
192 PRK14251 phosphate ABC transpo 99.6 1.2E-14 2.5E-19 148.9 12.0 172 397-582 18-204 (251)
193 PRK11022 dppD dipeptide transp 99.6 9.5E-15 2.1E-19 155.7 11.8 174 396-582 20-212 (326)
194 cd03246 ABCC_Protease_Secretio 99.6 6.1E-15 1.3E-19 142.9 9.4 139 397-582 16-154 (173)
195 PRK11231 fecE iron-dicitrate t 99.6 7.8E-15 1.7E-19 150.7 10.7 172 397-582 16-196 (255)
196 COG1129 MglA ABC-type sugar tr 99.6 1.7E-14 3.6E-19 159.0 13.8 218 385-629 13-243 (500)
197 cd03299 ABC_ModC_like Archeal 99.6 8.6E-15 1.9E-19 148.7 10.7 170 398-582 14-188 (235)
198 PRK13549 xylose transporter AT 99.6 7.6E-15 1.6E-19 165.2 11.3 173 397-582 19-201 (506)
199 PRK14254 phosphate ABC transpo 99.6 9.7E-15 2.1E-19 152.8 11.3 172 397-582 53-237 (285)
200 PRK14256 phosphate ABC transpo 99.6 1.1E-14 2.4E-19 149.2 11.5 172 397-582 18-205 (252)
201 PRK15439 autoinducer 2 ABC tra 99.6 4.7E-15 1E-19 167.1 9.4 172 397-582 25-198 (510)
202 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 99.6 1.1E-14 2.3E-19 147.1 11.0 172 383-582 25-200 (224)
203 cd03230 ABC_DR_subfamily_A Thi 99.6 5.1E-15 1.1E-19 143.4 8.2 139 397-582 14-153 (173)
204 PRK11247 ssuB aliphatic sulfon 99.6 5.1E-15 1.1E-19 152.7 8.7 165 397-582 26-192 (257)
205 PRK09700 D-allose transporter 99.6 6.6E-15 1.4E-19 165.8 10.2 172 398-582 278-467 (510)
206 cd03251 ABCC_MsbA MsbA is an e 99.6 6.5E-15 1.4E-19 149.0 9.0 189 397-613 16-215 (234)
207 cd03298 ABC_ThiQ_thiamine_tran 99.6 1.2E-14 2.5E-19 145.0 10.6 167 401-582 16-187 (211)
208 PRK15112 antimicrobial peptide 99.6 1.2E-14 2.5E-19 150.6 11.0 173 397-582 27-208 (267)
209 TIGR02982 heterocyst_DevA ABC 99.6 1.2E-14 2.6E-19 146.0 10.6 174 397-582 19-200 (220)
210 PRK14262 phosphate ABC transpo 99.6 1.2E-14 2.5E-19 148.8 10.7 172 397-582 17-203 (250)
211 PRK09700 D-allose transporter 99.6 1E-14 2.2E-19 164.3 11.1 173 397-582 19-203 (510)
212 PRK14237 phosphate transporter 99.6 1.8E-14 4E-19 149.1 12.1 172 397-582 34-220 (267)
213 COG2274 SunT ABC-type bacterio 99.6 8.8E-15 1.9E-19 169.2 10.6 171 396-584 486-668 (709)
214 cd03247 ABCC_cytochrome_bd The 99.6 6.3E-15 1.4E-19 143.3 8.0 140 397-582 16-155 (178)
215 PRK14245 phosphate ABC transpo 99.6 2.3E-14 4.9E-19 146.8 12.5 172 397-582 17-203 (250)
216 PRK09984 phosphonate/organopho 99.6 1.1E-14 2.4E-19 150.2 10.2 174 397-582 18-211 (262)
217 PRK13549 xylose transporter AT 99.6 2.2E-14 4.7E-19 161.5 13.4 173 397-582 276-463 (506)
218 PRK14271 phosphate ABC transpo 99.6 2.3E-14 4.9E-19 149.3 12.5 172 397-582 35-220 (276)
219 cd03249 ABC_MTABC3_MDL1_MDL2 M 99.6 7.4E-15 1.6E-19 149.0 8.7 171 397-582 17-196 (238)
220 PRK03695 vitamin B12-transport 99.6 1.8E-14 4E-19 147.6 11.6 169 398-582 11-191 (248)
221 TIGR00968 3a0106s01 sulfate AB 99.6 1.2E-14 2.7E-19 147.7 10.3 171 397-582 14-189 (237)
222 TIGR02142 modC_ABC molybdenum 99.6 6.9E-15 1.5E-19 158.5 8.9 170 401-582 15-190 (354)
223 PRK10982 galactose/methyl gala 99.6 1.1E-14 2.4E-19 163.3 10.8 173 397-582 12-192 (491)
224 PRK10253 iron-enterobactin tra 99.6 9.4E-15 2E-19 151.1 9.4 173 397-582 21-202 (265)
225 PRK11288 araG L-arabinose tran 99.6 1.1E-14 2.4E-19 163.7 10.8 173 397-582 18-198 (501)
226 cd03254 ABCC_Glucan_exporter_l 99.6 7.5E-15 1.6E-19 148.0 8.4 168 397-582 17-196 (229)
227 TIGR01277 thiQ thiamine ABC tr 99.6 1.5E-14 3.2E-19 144.6 10.5 169 399-582 14-187 (213)
228 TIGR02633 xylG D-xylose ABC tr 99.6 4.1E-14 8.8E-19 159.0 15.1 209 397-628 274-499 (500)
229 PRK14275 phosphate ABC transpo 99.6 2E-14 4.4E-19 150.4 11.8 172 397-582 53-239 (286)
230 TIGR03740 galliderm_ABC gallid 99.5 7.8E-15 1.7E-19 147.6 8.2 167 397-582 14-182 (223)
231 cd03228 ABCC_MRP_Like The MRP 99.5 1.2E-14 2.6E-19 140.6 9.1 138 397-582 16-153 (171)
232 PRK14248 phosphate ABC transpo 99.5 2.5E-14 5.3E-19 148.1 12.1 172 397-582 35-221 (268)
233 PRK14246 phosphate ABC transpo 99.5 2.3E-14 5.1E-19 147.7 11.8 171 397-582 24-210 (257)
234 PRK14239 phosphate transporter 99.5 2.5E-14 5.3E-19 146.5 11.9 172 397-582 19-205 (252)
235 cd03369 ABCC_NFT1 Domain 2 of 99.5 1.6E-14 3.5E-19 143.6 10.2 161 397-582 22-182 (207)
236 PRK15093 antimicrobial peptide 99.5 2.1E-14 4.6E-19 153.3 11.7 174 396-582 20-217 (330)
237 KOG0055|consensus 99.5 2.5E-14 5.5E-19 169.2 13.3 174 391-582 997-1183(1228)
238 PRK09473 oppD oligopeptide tra 99.5 2.3E-14 4.9E-19 153.1 11.8 174 396-582 29-220 (330)
239 PRK14238 phosphate transporter 99.5 2.4E-14 5.1E-19 148.7 11.6 172 397-582 38-224 (271)
240 PRK14263 phosphate ABC transpo 99.5 2.8E-14 6.2E-19 147.4 12.0 172 397-582 22-206 (261)
241 PRK14249 phosphate ABC transpo 99.5 2.4E-14 5.2E-19 146.6 11.3 193 397-613 18-225 (251)
242 PRK15177 Vi polysaccharide exp 99.5 1.9E-14 4.2E-19 144.2 10.3 178 398-613 2-182 (213)
243 PRK14260 phosphate ABC transpo 99.5 3.7E-14 8.1E-19 146.1 12.6 172 397-582 21-207 (259)
244 PRK14272 phosphate ABC transpo 99.5 3.2E-14 7E-19 145.6 12.1 192 397-612 18-225 (252)
245 PRK11144 modC molybdate transp 99.5 1.1E-14 2.3E-19 156.9 8.9 167 401-582 16-187 (352)
246 PRK14243 phosphate transporter 99.5 2.7E-14 5.8E-19 147.7 11.5 172 397-582 24-208 (264)
247 PRK10762 D-ribose transporter 99.5 1.4E-14 3E-19 162.9 10.0 193 398-613 267-474 (501)
248 cd03229 ABC_Class3 This class 99.5 9.4E-15 2E-19 142.2 7.5 144 397-582 14-159 (178)
249 TIGR03797 NHPM_micro_ABC2 NHPM 99.5 1.5E-14 3.3E-19 168.4 10.7 166 396-582 466-643 (686)
250 PRK14236 phosphate transporter 99.5 3.1E-14 6.7E-19 147.9 11.8 172 397-582 39-225 (272)
251 PRK13547 hmuV hemin importer A 99.5 1.8E-14 4E-19 149.8 10.1 178 397-582 15-213 (272)
252 PRK14257 phosphate ABC transpo 99.5 2E-14 4.3E-19 153.4 10.6 193 397-613 96-303 (329)
253 cd03233 ABC_PDR_domain1 The pl 99.5 9.8E-15 2.1E-19 145.1 7.6 142 396-567 20-165 (202)
254 TIGR03796 NHPM_micro_ABC1 NHPM 99.5 1.3E-14 2.8E-19 169.6 9.8 167 396-582 492-670 (710)
255 PRK14265 phosphate ABC transpo 99.5 2.5E-14 5.5E-19 148.8 11.0 172 397-582 34-218 (274)
256 COG4161 ArtP ABC-type arginine 99.5 1.5E-13 3.2E-18 129.8 14.9 210 396-628 15-240 (242)
257 COG4604 CeuD ABC-type enteroch 99.5 2.7E-14 6E-19 138.8 10.3 159 385-555 6-171 (252)
258 PRK13541 cytochrome c biogenes 99.5 2E-14 4.4E-19 141.8 9.7 162 401-582 18-181 (195)
259 TIGR02633 xylG D-xylose ABC tr 99.5 2.1E-14 4.6E-19 161.3 11.0 173 397-582 15-199 (500)
260 COG3845 ABC-type uncharacteriz 99.5 1.1E-13 2.3E-18 150.4 15.9 213 395-630 16-239 (501)
261 PRK11701 phnK phosphonate C-P 99.5 1.8E-14 3.8E-19 148.3 9.5 174 397-582 20-210 (258)
262 COG4619 ABC-type uncharacteriz 99.5 4.2E-14 9.1E-19 134.4 11.2 176 395-584 15-194 (223)
263 PRK14244 phosphate ABC transpo 99.5 3.9E-14 8.5E-19 145.1 12.0 172 397-582 19-206 (251)
264 cd03253 ABCC_ATM1_transporter 99.5 1.7E-14 3.7E-19 146.1 9.1 168 397-582 15-194 (236)
265 PRK14258 phosphate ABC transpo 99.5 3.6E-14 7.9E-19 146.4 11.6 174 397-582 21-209 (261)
266 PRK14264 phosphate ABC transpo 99.5 4E-14 8.6E-19 149.6 12.1 172 397-582 59-257 (305)
267 TIGR02857 CydD thiol reductant 99.5 1.7E-14 3.7E-19 163.1 9.8 168 397-582 336-515 (529)
268 PRK14261 phosphate ABC transpo 99.5 3.1E-14 6.7E-19 146.0 10.8 172 397-582 20-206 (253)
269 TIGR00958 3a01208 Conjugate Tr 99.5 2.5E-14 5.5E-19 167.2 11.5 167 396-582 494-672 (711)
270 cd03248 ABCC_TAP TAP, the Tran 99.5 2.1E-14 4.5E-19 144.7 9.2 171 397-582 28-207 (226)
271 PRK11160 cysteine/glutathione 99.5 1.5E-14 3.3E-19 165.2 9.3 168 397-582 354-532 (574)
272 cd03213 ABCG_EPDR ABCG transpo 99.5 2E-14 4.3E-19 142.0 8.8 145 396-582 22-169 (194)
273 cd03232 ABC_PDR_domain2 The pl 99.5 1.9E-14 4.1E-19 141.8 8.7 143 397-582 21-166 (192)
274 cd03290 ABCC_SUR1_N The SUR do 99.5 2.3E-14 5E-19 143.6 9.4 171 396-582 14-200 (218)
275 PRK11176 lipid transporter ATP 99.5 2.8E-14 6E-19 163.1 11.3 170 396-582 356-537 (582)
276 PRK10261 glutathione transport 99.5 2.8E-14 6.1E-19 164.5 11.0 174 397-582 338-522 (623)
277 PRK10261 glutathione transport 99.5 3.4E-14 7.4E-19 163.8 11.6 174 396-582 29-227 (623)
278 PRK10771 thiQ thiamine transpo 99.5 3.7E-14 8.1E-19 143.6 10.5 167 401-582 17-188 (232)
279 TIGR03375 type_I_sec_LssB type 99.5 2.2E-14 4.8E-19 167.3 9.8 201 396-628 478-690 (694)
280 PRK15439 autoinducer 2 ABC tra 99.5 3.1E-14 6.7E-19 160.5 10.6 172 398-582 278-461 (510)
281 PRK14266 phosphate ABC transpo 99.5 8.3E-14 1.8E-18 142.5 12.7 172 397-582 17-203 (250)
282 PRK10790 putative multidrug tr 99.5 3.2E-14 6.9E-19 163.0 10.5 167 397-582 355-533 (592)
283 PRK14255 phosphate ABC transpo 99.5 5.8E-14 1.3E-18 143.8 11.2 193 397-613 19-226 (252)
284 PRK10419 nikE nickel transport 99.5 6.4E-14 1.4E-18 145.2 11.7 175 396-582 25-210 (268)
285 TIGR01193 bacteriocin_ABC ABC- 99.5 3.2E-14 7E-19 166.3 10.5 168 397-582 488-667 (708)
286 COG1132 MdlB ABC-type multidru 99.5 4.4E-14 9.6E-19 161.1 11.4 169 396-582 342-522 (567)
287 TIGR03269 met_CoM_red_A2 methy 99.5 6.5E-14 1.4E-18 158.1 12.5 174 397-582 14-227 (520)
288 PRK10418 nikD nickel transport 99.5 3.4E-14 7.4E-19 145.9 9.3 171 397-582 17-199 (254)
289 PRK13657 cyclic beta-1,2-gluca 99.5 3.1E-14 6.7E-19 163.0 9.7 168 397-582 349-528 (588)
290 cd03297 ABC_ModC_molybdenum_tr 99.5 8.9E-14 1.9E-18 139.0 11.6 169 401-582 16-190 (214)
291 TIGR01257 rim_protein retinal- 99.5 4.8E-14 1E-18 176.9 11.8 171 397-582 1953-2128(2272)
292 TIGR02323 CP_lyasePhnK phospho 99.5 6.4E-14 1.4E-18 143.6 10.8 174 397-582 17-207 (253)
293 PRK15134 microcin C ABC transp 99.5 4.8E-14 1E-18 159.6 10.7 174 397-582 23-215 (529)
294 TIGR03269 met_CoM_red_A2 methy 99.5 6.5E-14 1.4E-18 158.2 11.8 206 397-628 298-519 (520)
295 COG4988 CydD ABC-type transpor 99.5 5.5E-14 1.2E-18 155.6 10.7 168 397-582 335-513 (559)
296 CHL00131 ycf16 sulfate ABC tra 99.5 4.7E-14 1E-18 144.4 9.3 172 397-582 21-209 (252)
297 cd03250 ABCC_MRP_domain1 Domai 99.5 4.1E-14 9E-19 140.4 8.6 156 397-582 19-186 (204)
298 cd03289 ABCC_CFTR2 The CFTR su 99.5 4.6E-14 9.9E-19 147.1 9.2 166 397-582 18-195 (275)
299 PRK15134 microcin C ABC transp 99.5 7.6E-14 1.6E-18 157.9 11.6 194 397-613 300-505 (529)
300 COG4618 ArpD ABC-type protease 99.5 1.2E-13 2.7E-18 149.9 12.6 175 391-582 344-530 (580)
301 PRK14252 phosphate ABC transpo 99.5 1.1E-13 2.3E-18 143.1 11.7 172 397-582 30-218 (265)
302 TIGR01257 rim_protein retinal- 99.5 6.2E-14 1.3E-18 175.9 11.7 170 397-582 944-1118(2272)
303 TIGR02203 MsbA_lipidA lipid A 99.5 6.4E-14 1.4E-18 159.6 10.7 169 397-582 346-526 (571)
304 PRK10938 putative molybdenum t 99.5 7.7E-14 1.7E-18 156.4 11.1 167 397-582 17-193 (490)
305 PRK15056 manganese/iron transp 99.5 3.5E-14 7.6E-19 147.4 7.7 169 397-582 21-200 (272)
306 PTZ00265 multidrug resistance 99.5 6.6E-14 1.4E-18 174.0 11.4 170 397-582 1182-1417(1466)
307 PRK10789 putative multidrug tr 99.5 5.7E-14 1.2E-18 160.3 9.9 169 396-582 328-508 (569)
308 cd03223 ABCD_peroxisomal_ALDP 99.5 4.8E-14 1E-18 135.9 7.8 132 397-582 15-146 (166)
309 PRK10982 galactose/methyl gala 99.5 6.8E-14 1.5E-18 156.9 10.2 173 397-582 262-449 (491)
310 COG3840 ThiQ ABC-type thiamine 99.5 2.3E-13 5.1E-18 130.9 12.1 186 403-613 19-209 (231)
311 cd03288 ABCC_SUR2 The SUR doma 99.5 9.4E-14 2E-18 143.0 10.2 187 397-613 35-233 (257)
312 cd03216 ABC_Carb_Monos_I This 99.5 4.7E-14 1E-18 135.6 7.4 127 397-582 14-140 (163)
313 PRK13546 teichoic acids export 99.5 1.1E-13 2.5E-18 143.3 10.7 162 395-582 36-201 (264)
314 PRK09580 sufC cysteine desulfu 99.5 7.8E-14 1.7E-18 142.3 9.3 173 397-582 15-203 (248)
315 COG0444 DppD ABC-type dipeptid 99.5 1.7E-13 3.7E-18 142.7 12.0 197 395-613 17-233 (316)
316 cd03217 ABC_FeS_Assembly ABC-t 99.5 6.2E-14 1.3E-18 139.1 8.3 146 397-582 14-162 (200)
317 TIGR01846 type_I_sec_HlyB type 99.5 9E-14 1.9E-18 162.2 10.9 169 396-582 470-650 (694)
318 TIGR01192 chvA glucan exporter 99.5 8.3E-14 1.8E-18 159.5 10.2 168 397-582 349-528 (585)
319 TIGR01842 type_I_sec_PrtD type 99.5 1.4E-13 3E-18 156.3 11.5 170 396-582 331-512 (544)
320 PRK13545 tagH teichoic acids e 99.5 1.4E-13 3.1E-18 153.2 11.2 160 397-582 38-201 (549)
321 COG1134 TagH ABC-type polysacc 99.5 2.7E-13 5.8E-18 136.3 11.7 184 395-613 39-226 (249)
322 TIGR02204 MsbA_rel ABC transpo 99.5 1.8E-13 3.8E-18 156.2 11.7 169 397-583 354-534 (576)
323 PF00005 ABC_tran: ABC transpo 99.5 3.2E-14 6.9E-19 131.6 4.2 131 399-548 1-137 (137)
324 COG4107 PhnK ABC-type phosphon 99.5 4.9E-13 1.1E-17 127.7 12.0 180 384-582 10-210 (258)
325 PLN03211 ABC transporter G-25; 99.5 2.2E-13 4.9E-18 157.6 11.2 168 397-582 82-264 (659)
326 TIGR03771 anch_rpt_ABC anchore 99.5 3E-13 6.5E-18 136.4 10.7 159 405-582 2-171 (223)
327 PLN03130 ABC transporter C fam 99.4 2.3E-13 5E-18 170.7 11.4 167 397-582 1253-1431(1622)
328 TIGR00957 MRP_assoc_pro multi 99.4 2.5E-13 5.4E-18 170.1 11.5 167 397-582 1300-1478(1522)
329 PLN03232 ABC transporter C fam 99.4 2.4E-13 5.1E-18 170.1 11.1 167 397-582 1250-1428(1495)
330 cd03214 ABC_Iron-Siderophores_ 99.4 2.5E-13 5.4E-18 132.4 8.7 143 397-582 13-156 (180)
331 COG1123 ATPase components of v 99.4 3.8E-13 8.2E-18 149.4 11.1 196 395-613 303-509 (539)
332 PRK10535 macrolide transporter 99.4 4.1E-13 9E-18 155.5 11.6 173 397-582 22-202 (648)
333 cd03237 ABC_RNaseL_inhibitor_d 99.4 2.5E-13 5.4E-18 139.3 8.7 158 399-582 10-174 (246)
334 COG1101 PhnK ABC-type uncharac 99.4 8.5E-13 1.8E-17 130.1 11.8 194 396-616 19-231 (263)
335 PRK09544 znuC high-affinity zi 99.4 1.8E-13 3.9E-18 140.7 7.5 158 397-582 18-179 (251)
336 COG1123 ATPase components of v 99.4 5.9E-13 1.3E-17 147.9 11.8 196 396-613 22-234 (539)
337 TIGR01187 potA spermidine/putr 99.4 5.1E-13 1.1E-17 142.4 10.3 154 416-582 1-159 (325)
338 TIGR01194 cyc_pep_trnsptr cycl 99.4 4E-13 8.7E-18 153.0 10.0 190 397-617 356-553 (555)
339 PRK10938 putative molybdenum t 99.4 4.5E-13 9.8E-18 150.2 9.7 174 397-582 274-460 (490)
340 PTZ00265 multidrug resistance 99.4 6.1E-13 1.3E-17 165.5 11.4 173 396-582 398-638 (1466)
341 TIGR00955 3a01204 The Eye Pigm 99.4 1E-12 2.2E-17 151.4 12.0 170 396-582 38-224 (617)
342 KOG0057|consensus 99.4 6.7E-13 1.4E-17 145.5 9.5 155 396-563 365-531 (591)
343 PRK11819 putative ABC transpor 99.4 4.4E-13 9.6E-18 152.7 8.4 158 397-582 21-218 (556)
344 PRK15064 ABC transporter ATP-b 99.4 5E-13 1.1E-17 151.3 8.7 158 397-582 15-210 (530)
345 PTZ00243 ABC transporter; Prov 99.4 9.5E-13 2.1E-17 164.9 11.7 168 397-582 1324-1503(1560)
346 PRK10522 multidrug transporter 99.4 6.9E-13 1.5E-17 150.7 9.3 185 397-613 337-528 (547)
347 COG1119 ModF ABC-type molybden 99.4 1.3E-12 2.8E-17 131.4 9.9 179 396-585 44-234 (257)
348 COG4987 CydC ABC-type transpor 99.4 1.8E-12 4E-17 141.9 12.0 197 389-614 344-552 (573)
349 PRK15064 ABC transporter ATP-b 99.4 6E-13 1.3E-17 150.7 8.5 177 397-613 333-514 (530)
350 PRK11819 putative ABC transpor 99.4 7.5E-13 1.6E-17 150.8 9.3 158 397-582 338-500 (556)
351 TIGR03719 ABC_ABC_ChvD ATP-bin 99.4 7.4E-13 1.6E-17 150.7 9.3 158 397-582 336-498 (552)
352 cd03291 ABCC_CFTR1 The CFTR su 99.4 7.4E-13 1.6E-17 138.5 7.9 175 397-613 51-237 (282)
353 COG4148 ModC ABC-type molybdat 99.4 5.7E-13 1.2E-17 135.6 6.5 143 402-555 17-164 (352)
354 TIGR00956 3a01205 Pleiotropic 99.4 1.4E-12 3.1E-17 161.9 11.2 170 396-582 776-960 (1394)
355 COG0396 sufC Cysteine desulfur 99.4 3.2E-12 6.9E-17 127.4 11.1 176 396-584 17-204 (251)
356 PRK13409 putative ATPase RIL; 99.4 1.3E-12 2.8E-17 149.5 9.4 156 399-582 355-512 (590)
357 PRK11147 ABC transporter ATPas 99.4 1.3E-12 2.8E-17 151.0 9.2 158 397-582 333-495 (635)
358 cd03236 ABC_RNaseL_inhibitor_d 99.4 2.3E-12 5.1E-17 132.9 10.1 168 397-582 15-197 (255)
359 TIGR01271 CFTR_protein cystic 99.4 2.8E-12 6.1E-17 160.4 12.4 166 397-582 1233-1410(1490)
360 TIGR03719 ABC_ABC_ChvD ATP-bin 99.3 1.5E-12 3.2E-17 148.2 8.8 158 397-582 19-216 (552)
361 KOG0059|consensus 99.3 4.8E-12 1E-16 151.1 10.6 171 398-582 580-755 (885)
362 PRK10636 putative ABC transpor 99.3 4.8E-12 1E-16 146.4 9.9 168 397-582 15-204 (638)
363 COG4136 ABC-type uncharacteriz 99.3 3.4E-12 7.4E-17 119.5 6.8 171 397-582 16-193 (213)
364 TIGR00954 3a01203 Peroxysomal 99.3 3.3E-12 7.1E-17 148.3 7.4 157 397-582 466-637 (659)
365 KOG0061|consensus 99.3 8.7E-12 1.9E-16 143.3 10.8 161 396-569 43-219 (613)
366 PRK13409 putative ATPase RIL; 99.3 3E-12 6.4E-17 146.6 6.7 176 382-582 75-269 (590)
367 KOG0056|consensus 99.3 8.5E-12 1.8E-16 134.6 9.6 171 396-581 551-730 (790)
368 cd03222 ABC_RNaseL_inhibitor T 99.3 7.5E-12 1.6E-16 122.3 8.1 117 397-582 14-130 (177)
369 cd03238 ABC_UvrA The excision 99.3 1.3E-11 2.8E-16 120.5 9.6 137 395-582 7-147 (176)
370 PLN03140 ABC transporter G fam 99.3 6.7E-12 1.4E-16 156.0 9.4 170 396-582 893-1077(1470)
371 COG4608 AppF ABC-type oligopep 99.3 7E-12 1.5E-16 128.2 7.8 143 396-582 26-168 (268)
372 TIGR00956 3a01205 Pleiotropic 99.3 1.1E-11 2.4E-16 154.1 10.2 173 396-582 74-268 (1394)
373 cd00267 ABC_ATPase ABC (ATP-bi 99.3 1.1E-11 2.3E-16 118.0 7.6 126 397-582 13-138 (157)
374 cd03221 ABCF_EF-3 ABCF_EF-3 E 99.3 9.2E-12 2E-16 117.4 6.9 112 397-582 14-125 (144)
375 PRK10636 putative ABC transpor 99.2 9.3E-12 2E-16 144.0 8.3 158 397-582 326-485 (638)
376 PLN03073 ABC transporter F fam 99.2 1.2E-11 2.6E-16 144.4 8.7 175 398-612 524-702 (718)
377 PRK11147 ABC transporter ATPas 99.2 1.8E-11 3.8E-16 141.7 9.4 169 397-582 17-211 (635)
378 PLN03140 ABC transporter G fam 99.2 2.5E-11 5.5E-16 150.8 10.6 172 395-582 177-395 (1470)
379 COG4167 SapF ABC-type antimicr 99.2 4.4E-11 9.6E-16 115.3 9.5 173 395-581 25-207 (267)
380 COG4674 Uncharacterized ABC-ty 99.2 1.4E-11 3.1E-16 119.9 5.8 195 395-613 17-225 (249)
381 TIGR01271 CFTR_protein cystic 99.2 2.6E-11 5.6E-16 151.8 9.3 158 397-582 440-606 (1490)
382 PRK09435 membrane ATPase/prote 99.2 4.8E-10 1E-14 119.6 17.6 152 408-586 53-207 (332)
383 TIGR00750 lao LAO/AO transport 99.2 3.6E-10 7.9E-15 119.3 16.4 162 396-586 21-185 (300)
384 PLN03130 ABC transporter C fam 99.2 2.8E-11 6.1E-16 152.2 9.1 155 397-582 631-798 (1622)
385 PLN03232 ABC transporter C fam 99.2 3.1E-11 6.8E-16 151.3 8.2 156 397-582 631-798 (1495)
386 PLN03073 ABC transporter F fam 99.1 1.2E-10 2.5E-15 136.2 10.1 170 397-582 191-399 (718)
387 cd03270 ABC_UvrA_I The excisio 99.1 2.2E-10 4.7E-15 116.1 10.7 65 508-582 132-197 (226)
388 COG0488 Uup ATPase components 99.1 1.5E-10 3.3E-15 130.3 9.8 158 397-582 17-208 (530)
389 PTZ00243 ABC transporter; Prov 99.1 6.9E-11 1.5E-15 148.4 7.7 155 397-582 674-840 (1560)
390 TIGR00957 MRP_assoc_pro multi 99.1 1E-10 2.3E-15 146.8 8.8 157 397-582 652-820 (1522)
391 COG4138 BtuD ABC-type cobalami 99.1 1.7E-10 3.7E-15 110.7 7.7 169 402-585 18-192 (248)
392 COG4172 ABC-type uncharacteriz 99.1 3.7E-10 8E-15 120.2 10.3 199 392-613 19-237 (534)
393 COG4172 ABC-type uncharacteriz 99.1 7.1E-10 1.5E-14 118.1 11.8 194 396-613 300-506 (534)
394 COG4778 PhnL ABC-type phosphon 99.1 5.2E-10 1.1E-14 106.9 9.5 156 394-557 22-190 (235)
395 COG5265 ATM1 ABC-type transpor 99.1 8.6E-10 1.9E-14 118.1 11.6 160 395-567 275-446 (497)
396 COG1703 ArgK Putative periplas 99.1 1.8E-09 3.8E-14 111.7 13.5 148 408-585 48-201 (323)
397 cd03114 ArgK-like The function 99.1 1.3E-09 2.8E-14 103.6 11.4 145 413-584 1-148 (148)
398 cd03271 ABC_UvrA_II The excisi 99.0 2.2E-09 4.9E-14 111.1 11.5 171 396-582 8-230 (261)
399 KOG0054|consensus 99.0 2E-09 4.4E-14 130.7 10.7 145 396-553 1153-1309(1381)
400 cd03278 ABC_SMC_barmotin Barmo 98.9 9.3E-10 2E-14 109.3 6.3 150 402-582 16-174 (197)
401 COG0488 Uup ATPase components 98.9 1.7E-09 3.7E-14 121.9 8.0 157 397-582 336-494 (530)
402 PF03308 ArgK: ArgK protein; 98.9 2E-09 4.4E-14 109.8 7.2 151 408-585 26-179 (266)
403 cd03273 ABC_SMC2_euk Eukaryoti 98.9 1.3E-09 2.8E-14 112.0 4.4 167 411-585 25-230 (251)
404 KOG0065|consensus 98.8 1.2E-09 2.7E-14 130.2 1.5 197 396-612 804-1019(1391)
405 PHA02518 ParA-like protein; Pr 98.8 2E-07 4.4E-12 92.2 16.8 163 413-605 2-165 (211)
406 KOG0054|consensus 98.8 1.2E-08 2.7E-13 124.1 9.3 156 397-582 535-701 (1381)
407 COG4615 PvdE ABC-type sideroph 98.8 3.8E-08 8.2E-13 104.8 11.7 179 399-605 339-527 (546)
408 TIGR01007 eps_fam capsular exo 98.8 1.6E-07 3.5E-12 93.2 14.8 159 411-586 17-193 (204)
409 KOG2355|consensus 98.8 2.3E-08 4.9E-13 98.5 8.3 190 397-614 28-228 (291)
410 cd03274 ABC_SMC4_euk Eukaryoti 98.7 5.6E-09 1.2E-13 104.9 4.1 151 412-584 26-190 (212)
411 KOG0927|consensus 98.7 2.7E-08 5.8E-13 109.5 8.7 198 396-612 88-306 (614)
412 PRK13768 GTPase; Provisional 98.7 2.8E-07 6E-12 95.2 15.3 167 411-586 2-175 (253)
413 TIGR00073 hypB hydrogenase acc 98.7 4.8E-07 1E-11 90.3 16.3 164 408-608 19-188 (207)
414 TIGR00101 ureG urease accessor 98.7 2.3E-07 5.1E-12 92.4 13.7 176 411-615 1-186 (199)
415 cd02117 NifH_like This family 98.7 1.6E-07 3.5E-12 94.0 11.3 182 413-605 2-206 (212)
416 cd02037 MRP-like MRP (Multiple 98.6 6E-07 1.3E-11 86.5 14.6 131 414-585 2-133 (169)
417 KOG0927|consensus 98.6 1.1E-07 2.5E-12 104.7 10.4 147 398-566 405-555 (614)
418 PF07015 VirC1: VirC1 protein; 98.6 5.2E-07 1.1E-11 91.2 14.4 149 413-585 3-152 (231)
419 KOG0066|consensus 98.6 1.6E-07 3.5E-12 100.8 11.2 131 412-568 614-752 (807)
420 PRK13849 putative crown gall t 98.6 1.4E-06 3E-11 88.9 17.0 150 412-585 2-152 (231)
421 cd03110 Fer4_NifH_child This p 98.6 6.6E-07 1.4E-11 86.8 14.1 167 416-605 5-175 (179)
422 PRK13185 chlL protochlorophyll 98.6 7.2E-07 1.6E-11 92.4 14.6 179 412-605 3-202 (270)
423 cd03240 ABC_Rad50 The catalyti 98.6 4.5E-08 9.7E-13 97.8 5.3 142 413-582 24-181 (204)
424 KOG0062|consensus 98.6 1.3E-07 2.8E-12 103.8 9.2 148 398-582 95-253 (582)
425 smart00053 DYNc Dynamin, GTPas 98.6 3.2E-07 6.9E-12 94.0 10.5 86 507-600 125-218 (240)
426 TIGR03029 EpsG chain length de 98.6 1.2E-06 2.6E-11 91.0 14.9 159 408-582 100-274 (274)
427 TIGR01969 minD_arch cell divis 98.6 9.8E-07 2.1E-11 89.7 14.0 176 413-605 2-191 (251)
428 cd02032 Bchl_like This family 98.6 6.7E-07 1.4E-11 92.5 12.9 178 413-605 2-200 (267)
429 cd02035 ArsA ArsA ATPase funct 98.6 2E-06 4.4E-11 86.5 16.0 162 413-586 1-183 (217)
430 cd02033 BchX Chlorophyllide re 98.6 9E-07 1.9E-11 94.6 14.1 181 410-605 30-235 (329)
431 PRK10818 cell division inhibit 98.6 2.2E-06 4.7E-11 88.7 16.6 182 412-604 3-207 (270)
432 cd03272 ABC_SMC3_euk Eukaryoti 98.5 7.9E-08 1.7E-12 97.8 5.6 86 510-614 155-240 (243)
433 PF01656 CbiA: CobQ/CobB/MinD/ 98.5 5.9E-07 1.3E-11 87.4 11.4 156 416-586 4-161 (195)
434 CHL00175 minD septum-site dete 98.5 1.4E-06 3.1E-11 90.8 14.6 160 411-586 15-191 (281)
435 COG1129 MglA ABC-type sugar tr 98.5 7.3E-07 1.6E-11 99.1 12.8 208 398-629 274-498 (500)
436 TIGR01005 eps_transp_fam exopo 98.5 1.2E-06 2.6E-11 103.8 14.7 165 407-586 542-721 (754)
437 COG4178 ABC-type uncharacteriz 98.5 2.8E-07 6E-12 104.4 8.8 148 390-564 401-559 (604)
438 PRK09841 cryptic autophosphory 98.5 1.7E-06 3.6E-11 102.0 15.6 163 407-586 527-706 (726)
439 cd02040 NifH NifH gene encodes 98.5 1.7E-06 3.7E-11 89.2 13.8 40 412-451 2-41 (270)
440 cd03283 ABC_MutS-like MutS-lik 98.5 2E-07 4.2E-12 92.9 6.4 34 398-435 16-49 (199)
441 PRK11519 tyrosine kinase; Prov 98.5 2E-06 4.4E-11 101.2 15.6 163 407-586 522-701 (719)
442 TIGR01281 DPOR_bchL light-inde 98.5 1.9E-06 4E-11 89.2 13.3 38 413-450 2-39 (268)
443 cd02036 MinD Bacterial cell di 98.5 4.2E-06 9.2E-11 80.4 14.7 144 414-605 2-147 (179)
444 PRK13234 nifH nitrogenase redu 98.4 1.3E-06 2.7E-11 92.3 11.5 41 412-452 5-45 (295)
445 cd03276 ABC_SMC6_euk Eukaryoti 98.4 9.5E-07 2.1E-11 87.9 10.0 137 412-566 22-159 (198)
446 COG3640 CooC CO dehydrogenase 98.4 8.2E-06 1.8E-10 82.2 16.4 172 413-604 2-213 (255)
447 cd03279 ABC_sbcCD SbcCD and ot 98.4 1.4E-07 3E-12 94.7 3.5 69 508-582 118-191 (213)
448 CHL00072 chlL photochlorophyll 98.4 3.2E-06 6.9E-11 89.0 13.9 177 414-605 3-200 (290)
449 cd00820 PEPCK_HprK Phosphoenol 98.4 5.5E-08 1.2E-12 87.3 0.5 75 397-482 3-77 (107)
450 TIGR03371 cellulose_yhjQ cellu 98.4 4.6E-06 1E-10 84.7 14.5 40 412-451 2-42 (246)
451 TIGR02016 BchX chlorophyllide 98.4 1.7E-06 3.6E-11 91.5 11.6 39 413-451 2-40 (296)
452 PRK11670 antiporter inner memb 98.4 5.5E-06 1.2E-10 90.2 15.7 43 412-454 108-151 (369)
453 COG3845 ABC-type uncharacteriz 98.4 3.3E-06 7.2E-11 92.7 13.9 207 396-628 271-499 (501)
454 PRK13235 nifH nitrogenase redu 98.4 1.5E-06 3.4E-11 90.3 10.9 40 412-451 2-41 (274)
455 TIGR03018 pepcterm_TyrKin exop 98.4 4.6E-06 1E-10 83.3 13.8 155 411-581 35-207 (207)
456 PRK13230 nitrogenase reductase 98.4 1.8E-06 3.9E-11 90.0 11.0 39 412-450 2-40 (279)
457 cd00550 ArsA_ATPase Oxyanion-t 98.4 7.9E-06 1.7E-10 84.4 15.6 38 413-450 2-39 (254)
458 PRK12337 2-phosphoglycerate ki 98.4 8.1E-07 1.7E-11 98.0 8.0 108 334-451 179-291 (475)
459 COG0489 Mrp ATPases involved i 98.4 4.9E-06 1.1E-10 86.6 13.4 175 412-601 58-249 (265)
460 cd03275 ABC_SMC1_euk Eukaryoti 98.4 4.7E-07 1E-11 92.9 5.7 64 512-582 154-217 (247)
461 COG4170 SapD ABC-type antimicr 98.3 1.7E-06 3.6E-11 85.6 8.9 198 389-614 13-239 (330)
462 COG0378 HypB Ni2+-binding GTPa 98.3 2.9E-06 6.2E-11 83.4 10.1 167 409-616 10-192 (202)
463 COG2401 ABC-type ATPase fused 98.3 7.4E-07 1.6E-11 95.7 6.5 179 396-612 396-587 (593)
464 PF03029 ATP_bind_1: Conserved 98.3 6.7E-06 1.4E-10 84.3 13.0 34 416-449 1-34 (238)
465 TIGR01968 minD_bact septum sit 98.3 6.4E-06 1.4E-10 84.1 12.7 157 412-585 2-175 (261)
466 COG1245 Predicted ATPase, RNas 98.3 1.3E-06 2.8E-11 94.9 7.6 162 412-608 368-531 (591)
467 PF06564 YhjQ: YhjQ protein; 98.3 2.2E-05 4.7E-10 80.5 15.9 38 412-449 2-40 (243)
468 PRK10463 hydrogenase nickel in 98.3 1.2E-05 2.6E-10 84.3 14.1 90 412-517 105-195 (290)
469 PRK00349 uvrA excinuclease ABC 98.3 5.9E-06 1.3E-10 99.2 12.9 63 510-582 827-891 (943)
470 cd03112 CobW_like The function 98.3 7.6E-06 1.6E-10 78.5 11.2 145 413-585 2-158 (158)
471 cd02042 ParA ParA and ParB of 98.3 1.2E-05 2.7E-10 70.8 11.7 38 413-450 1-39 (104)
472 PRK13232 nifH nitrogenase redu 98.3 6.4E-06 1.4E-10 85.7 11.4 41 412-452 2-42 (273)
473 COG1192 Soj ATPases involved i 98.2 9.5E-06 2.1E-10 83.5 12.2 41 411-451 2-44 (259)
474 TIGR01287 nifH nitrogenase iro 98.2 7.9E-06 1.7E-10 84.9 11.5 39 413-451 2-40 (275)
475 PRK13231 nitrogenase reductase 98.2 8E-06 1.7E-10 84.4 11.4 39 412-451 3-41 (264)
476 PRK04220 2-phosphoglycerate ki 98.2 6.6E-06 1.4E-10 86.6 10.4 102 339-451 23-128 (301)
477 PRK00635 excinuclease ABC subu 98.2 2.1E-06 4.6E-11 107.7 7.8 65 510-582 806-870 (1809)
478 PRK13869 plasmid-partitioning 98.2 2.6E-05 5.6E-10 86.0 15.4 40 412-451 122-162 (405)
479 smart00382 AAA ATPases associa 98.2 2.2E-05 4.8E-10 70.2 11.7 93 412-523 3-95 (148)
480 PRK13233 nifH nitrogenase redu 98.2 3.4E-05 7.4E-10 80.2 14.4 41 412-452 3-44 (275)
481 cd03280 ABC_MutS2 MutS2 homolo 98.1 2E-06 4.3E-11 85.4 4.6 37 401-438 19-56 (200)
482 TIGR00630 uvra excinuclease AB 98.1 7.4E-06 1.6E-10 98.1 10.2 64 511-582 826-889 (924)
483 PF02492 cobW: CobW/HypB/UreG, 98.1 9.1E-06 2E-10 79.3 8.5 150 413-587 2-155 (178)
484 PHA02519 plasmid partition pro 98.1 2.6E-05 5.7E-10 85.4 13.0 42 410-451 105-148 (387)
485 cd02038 FleN-like FleN is a me 98.1 5.3E-05 1.2E-09 70.9 13.3 106 416-586 5-110 (139)
486 PRK13236 nitrogenase reductase 98.1 2.5E-05 5.5E-10 82.5 12.3 41 412-452 7-47 (296)
487 TIGR03453 partition_RepA plasm 98.1 4.6E-05 1E-09 83.4 14.7 41 411-451 104-145 (387)
488 PRK10037 cell division protein 98.1 4.4E-05 9.6E-10 78.4 13.2 39 413-451 3-42 (250)
489 cd03282 ABC_MSH4_euk MutS4 hom 98.1 1.3E-05 2.8E-10 80.2 8.8 37 397-435 17-53 (204)
490 KOG0060|consensus 98.1 1.1E-05 2.3E-10 90.0 8.8 146 389-552 441-603 (659)
491 PRK13705 plasmid-partitioning 98.1 3.7E-05 8.1E-10 84.3 12.9 43 410-452 105-149 (388)
492 TIGR03238 dnd_assoc_3 dnd syst 98.1 2.1E-06 4.6E-11 94.8 3.1 59 397-459 20-81 (504)
493 cd03111 CpaE_like This protein 98.1 6.7E-05 1.4E-09 67.1 12.2 38 414-451 2-41 (106)
494 cd02034 CooC The accessory pro 98.1 2.1E-05 4.6E-10 71.7 9.1 97 414-519 2-99 (116)
495 COG0455 flhG Antiactivator of 98.0 0.00016 3.5E-09 75.1 16.4 180 411-608 2-203 (262)
496 TIGR03815 CpaE_hom_Actino heli 98.0 0.00023 4.9E-09 76.0 17.8 173 412-605 94-284 (322)
497 cd03243 ABC_MutS_homologs The 98.0 6.7E-06 1.5E-10 81.7 5.7 28 405-434 25-52 (202)
498 COG1341 Predicted GTPase or GT 98.0 1.4E-05 2.9E-10 86.4 7.9 128 410-546 72-210 (398)
499 cd03227 ABC_Class2 ABC-type Cl 98.0 4.3E-05 9.3E-10 73.4 10.6 121 412-585 22-142 (162)
500 cd03277 ABC_SMC5_euk Eukaryoti 98.0 1.6E-05 3.5E-10 80.0 7.9 91 510-613 123-213 (213)
No 1
>KOG0781|consensus
Probab=100.00 E-value=3e-115 Score=919.21 Aligned_cols=582 Identities=52% Similarity=0.820 Sum_probs=473.2
Q ss_pred CcceEEEeecCceEEEEeccCCCCCCchHHHHHHHhhhccccCCCceeecCeEEEEEEeccccEEEEEEeccccchhcHH
Q psy11993 1 MLDFFTIFSKGGIVLWYFQSASQIFTPSLNALIKSVILQERGGNQVFEHNGLVLKHKLDNEFDLVFVVGFQKILQLSYVD 80 (630)
Q Consensus 1 Mld~~~i~t~gG~vLw~~~~~~~~~~~~in~li~~~~leer~~~~~~~~~~~~l~w~~~n~~~lvfv~~yq~~l~l~y~d 80 (630)
|||+|.||||||+|||||+..+..+..|||+||++||+|||++..+|.++.|||||+++|+++||||+|||+|++|.|+|
T Consensus 1 Mld~faIFtkgG~vLw~~~~~~~~~~~~in~lI~~~ll~er~~~~~~~~~~yTlk~q~~N~~~lvfvvvfqki~~L~yv~ 80 (587)
T KOG0781|consen 1 MLDQFAIFTKGGLVLWCYQEVGDNLKGPINALIRSVLLSERGGVNSFTFEAYTLKYQLDNQYSLVFVVVFQKILTLTYVD 80 (587)
T ss_pred CcceeeeecCCcEEEEEecccchhccchHHHHHHHHHHHhhcCcccCchhheeEeeeecCCccEEEEEEEeccchhhhHH
Confidence 99999999999999999997766666699999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhhcCCCcceecCccHHHHHHHHHHHHh---hhhhhcCcccccchhhhcccccchhhhhhccCcc
Q psy11993 81 KLLDDVHLEFRDKYKNELGSDMHLYDYDFESTYNVLLKEAEEW---SKVQACIPKQMRTFEESSKSKKTIASMIIDKNKK 157 (630)
Q Consensus 81 ~ll~~~~~~f~~~~~~~l~~~~~~~~~~f~~~f~~~l~~~e~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (630)
+||++++..|++.|.++-... .-.+|++.|..+|+..... ...+.+.|..++.++.++|.+.++..+.++++++
T Consensus 81 ~ll~~v~~~f~e~~~~~~~~~---l~~n~~~~~~e~lk~rq~~ne~t~~k~~~pi~~~~~~~~~K~~~~v~~~~e~~~d~ 157 (587)
T KOG0781|consen 81 KLLNDVLNLFREKYDTQSALS---LLNNTFDFQEELLKLRQVANEATEYKIRAPITMKKSEDLEKAKDPVRSPIETNGDK 157 (587)
T ss_pred HHHHHHHHHHHHHhccchHHH---hhhhhHHHHHHHHHHhhcccccchhhhcccchhhhhhcchhhhhhhcccccccccc
Confidence 999999999999997631100 1223566666666654432 2112222555666666666655555555543332
Q ss_pred ccCCCcccccCCcccCcCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHhCCCC-CC-CCCCCCCCCcccCCCCcccCCC
Q psy11993 158 EEKSVPSKKKGKAVETKVEPVTPPSPVQNGDAGIEEDIIMINRQKLAMKMGSPK-NK-TKPKTPKANAKEGKKPRIWELS 235 (630)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~-~~-~~~~~~~~~~k~~k~~r~w~~~ 235 (630)
..++..+. .+.+ ..+.+ .. +++..+....+ ++ +.++.+.|++|.+|++|+|++.
T Consensus 158 s~kk~~nt--------~kng--------~~~~~-h~-------~~~kk~~~~tkkKg~~s~~~~~p~kKGkk~~RvWdd~ 213 (587)
T KOG0781|consen 158 SAKKKKNT--------KKNG--------AKKEG-HD-------EEFKKKHRETKKKGNKSTKVDAPKKKGKKAPRVWDDA 213 (587)
T ss_pred chhccccc--------ccCC--------Ccccc-hh-------hhhhhhhcccccccccCCCCCCchhhcccccchhhhc
Confidence 21111111 0100 00101 11 11111222222 22 2244555656666779999998
Q ss_pred CCCCCcccccccCCCCCCCCCCCCCCCccccccccCCcccccccccccccCCchhhhhhhhhhhhhhhcccccccchHHH
Q psy11993 236 GDQRDLSTLEYTKDKPSDSNALNITPDTHLVGKMVGGIKDLEVESSSEEESSDDEEDVRAETSHVSAKKANGKANKGMFS 315 (630)
Q Consensus 236 ~~~~~~~~ld~s~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (630)
+. +|...||||+...++.+......+....+.|.|.+.++..+++++++. ++++ .++ +...+ +.+++|+
T Consensus 214 g~-~d~~~ld~sss~sn~e~a~~e~vn~~~~~s~~~~~~~l~~~~~d~~~s-~~~~----~~~-~~~~k----~~g~aFg 282 (587)
T KOG0781|consen 214 GC-EDEKVLDYSSSTSNGENALSETVNLDQGESMGGQLQDLDKDSSDDEGS-ADNS----TDP-AATKK----TVGGAFG 282 (587)
T ss_pred cc-hhhcccccCCccccccchhHHHhhhhhhcccccccccccccccccccc-cccc----cch-hhhhc----chhhHHH
Confidence 86 577889999888755332222222224445666666666555544432 2221 111 22222 2689999
Q ss_pred HHHhhhCCccCCccchHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCccCCccchHHHHHHHHHHHHHHHcCCCcc
Q psy11993 316 LFRGLVGSKNLTKSDMKPILEKMKDHLIAKNVAADIAVKLCDSVALKLEGKVLGTFESVANTVKSTLTDALVQILSPKRR 395 (630)
Q Consensus 316 ~~~~~~~~~~l~~~~l~~~l~~l~~~Li~~~V~~~ia~~l~~~v~~~l~g~~~~~~~~~~~~v~~~l~~~L~~il~~~~~ 395 (630)
+|++++|++.|.++||.|+|++|++|||.+||++++|++||++|...|+|+++++|+++.++|+++|+++|++||+|.++
T Consensus 283 ~fkglvG~K~L~eeDL~pvL~kM~ehLitKNVA~eiA~~LcEsV~a~Legkkv~sfs~V~~Tvk~Al~daLvQILTP~~s 362 (587)
T KOG0781|consen 283 LFKGLVGSKSLSEEDLNPVLDKMTEHLITKNVAAEIAEKLCESVAASLEGKKVGSFSTVESTVKEALRDALVQILTPQRS 362 (587)
T ss_pred HHHhhcccccccHhhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHHHHHHcCCCch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccCCCcCCc
Q psy11993 396 VDILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHPAAKHG 475 (630)
Q Consensus 396 ~~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~~~~~t 475 (630)
+|+|++|.-....++||+|+|||+|||||||+|+|||+||.+++.+|+|++|||||+||+||||+|++++...++
T Consensus 363 VDlLRdI~sar~~krPYVi~fvGVNGVGKSTNLAKIayWLlqNkfrVLIAACDTFRsGAvEQLrtHv~rl~~l~~----- 437 (587)
T KOG0781|consen 363 VDLLRDIMSARRRKRPYVISFVGVNGVGKSTNLAKIAYWLLQNKFRVLIAACDTFRSGAVEQLRTHVERLSALHG----- 437 (587)
T ss_pred hhHHHHHHHHHhcCCCeEEEEEeecCccccchHHHHHHHHHhCCceEEEEeccchhhhHHHHHHHHHHHHHHhcc-----
Confidence 999999999999999999999999999999999999999999999999999999999999999999999976554
Q ss_pred chhhhHhhhccCCCCHHHHHHHHHHHhhhcCCCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCccHHHH
Q psy11993 476 GREMVQLFEKGYGKDPAEIAFRAISHARDMHIDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQ 555 (630)
Q Consensus 476 v~env~l~~~~~~~d~~~ia~~ai~~a~~~~~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~Dav~q 555 (630)
..|++|+.+|++|++.+++.||++++..+||+|+||||||||.+.+||++|.+++.++.||.||+|+|+++|+|+++|
T Consensus 438 --~~v~lfekGYgkd~a~vak~AI~~a~~~gfDVvLiDTAGR~~~~~~lm~~l~k~~~~~~pd~i~~vgealvg~dsv~q 515 (587)
T KOG0781|consen 438 --TMVELFEKGYGKDAAGVAKEAIQEARNQGFDVVLIDTAGRMHNNAPLMTSLAKLIKVNKPDLILFVGEALVGNDSVDQ 515 (587)
T ss_pred --chhHHHhhhcCCChHHHHHHHHHHHHhcCCCEEEEeccccccCChhHHHHHHHHHhcCCCceEEEehhhhhCcHHHHH
Confidence 248999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcccCCCCCCeeEEEEcccCCcCccHHHHHHHHHHhCCcEEEEecCCCCccCCCCCHHHHHHHhhC
Q psy11993 556 LVKFNNAMADHSLSDNPHLIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGTGQTYTDLKSLNAKAVVNALMK 630 (630)
Q Consensus 556 l~~f~~~l~~~~~~~~~~~i~gIIlTK~D~~~~~~G~~ls~~~~~g~PI~fvg~Gq~v~DL~~~~~~~~v~~Ll~ 630 (630)
+..||+++++.. .||.|||||+||||++|+++|++++|+|.+|.||.|||+||+|.||+.++++++|+.||+
T Consensus 516 ~~~fn~al~~~~---~~r~id~~~ltk~dtv~d~vg~~~~m~y~~~~pi~fvg~gqtysdlr~l~v~~vv~~lm~ 587 (587)
T KOG0781|consen 516 LKKFNRALADHS---TPRLIDGILLTKFDTVDDKVGAAVSMVYITGKPILFVGVGQTYSDLRKLNVKAVVATLMK 587 (587)
T ss_pred HHHHHHHHhcCC---CccccceEEEEeccchhhHHHHHhhheeecCCceEEEecCcchhhhhhccHHHHHHHhhC
Confidence 999999998776 588999999999999999999999999999999999999999999999999999999986
No 2
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=100.00 E-value=3.9e-52 Score=430.31 Aligned_cols=277 Identities=40% Similarity=0.628 Sum_probs=244.9
Q ss_pred ccCCccchHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCccCCccchHHHHHHHHHHHHHHHcCCCcchhhhhhhh
Q psy11993 324 KNLTKSDMKPILEKMKDHLIAKNVAADIAVKLCDSVALKLEGKVLGTFESVANTVKSTLTDALVQILSPKRRVDILRDAL 403 (630)
Q Consensus 324 ~~l~~~~l~~~l~~l~~~Li~~~V~~~ia~~l~~~v~~~l~g~~~~~~~~~~~~v~~~l~~~L~~il~~~~~~~iL~~i~ 403 (630)
..+.+.+.++.+++|++.|+++||+.+++..||+.++.. .+......+ ...+++++.+.|..++.|....+...
T Consensus 58 ~~~~~~~de~~~eeLE~~Li~aDvg~e~~~~i~~~l~~~-~~~~~~~~~--~~~v~~~l~~~l~~il~~~~~~~~~~--- 131 (340)
T COG0552 58 KKIKEKLDEDLLEELEELLIEADVGVETAEEIIEELRKR-EGKKKKIKD--EETVKEALREALIEILRPVDKVDLPL--- 131 (340)
T ss_pred cccccchhHHHHHHHHHHHHHccccHHHHHHHHHHHHHH-hcccccCCC--HHHHHHHHHHHHHHHhcccccccchh---
Confidence 344566778899999999999999999999999999996 333222222 67899999999999998754433222
Q ss_pred hhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccCCCcCCcchhhhHhh
Q psy11993 404 EAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHPAAKHGGREMVQLF 483 (630)
Q Consensus 404 ~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~~~~~tv~env~l~ 483 (630)
.....++|++|+|||+||+|||||++|||+||..++.+|++++|||||++|+|||+.|+.+++. .++
T Consensus 132 ~~~~~~~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv-------------~vI 198 (340)
T COG0552 132 EIPKEKKPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERLGV-------------PVI 198 (340)
T ss_pred hhccCCCcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhCC-------------eEE
Confidence 1223567999999999999999999999999999999999999999999999999999999984 455
Q ss_pred hccCCCCHHHHHHHHHHHhhhcCCCeeeeccccchhchHHHHHHHHhhhhhcC------CCeEEEEeccccCccHHHHHH
Q psy11993 484 EKGYGKDPAEIAFRAISHARDMHIDVVLIDTAGRMQDNEPLMRALAKLVKVNQ------PDLLLFVGEALVGNEAVDQLV 557 (630)
Q Consensus 484 ~~~~~~d~~~ia~~ai~~a~~~~~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~------Pd~VLlV~E~~~g~Dav~ql~ 557 (630)
...+|.||+.+++++++++...++|+|+||||||+|.+..||.+|.|+.++.. |+++++++|+++|+++++|++
T Consensus 199 ~~~~G~DpAaVafDAi~~Akar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqnal~QAk 278 (340)
T COG0552 199 SGKEGADPAAVAFDAIQAAKARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQNALSQAK 278 (340)
T ss_pred ccCCCCCcHHHHHHHHHHHHHcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccChhHHHHHH
Confidence 54489999999999999999999999999999999999999999999999875 455888999999999999999
Q ss_pred HHHHHHhhcccCCCCCCeeEEEEcccCCcCccHHHHHHHHHHhCCcEEEEecCCCCccCCCCCHHHHHHHhhC
Q psy11993 558 KFNNAMADHSLSDNPHLIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGTGQTYTDLKSLNAKAVVNALMK 630 (630)
Q Consensus 558 ~f~~~l~~~~~~~~~~~i~gIIlTK~D~~~~~~G~~ls~~~~~g~PI~fvg~Gq~v~DL~~~~~~~~v~~Ll~ 630 (630)
.|++++ +++|+|+||+|.+ .++|.++++++.+++||.|+|.||.|.||++|++++||+.||.
T Consensus 279 ~F~eav----------~l~GiIlTKlDgt-AKGG~il~I~~~l~~PI~fiGvGE~~~DL~~Fd~~~fv~~L~~ 340 (340)
T COG0552 279 IFNEAV----------GLDGIILTKLDGT-AKGGIILSIAYELGIPIKFIGVGEGYDDLRPFDAEWFVDALLG 340 (340)
T ss_pred HHHHhc----------CCceEEEEecccC-CCcceeeeHHHHhCCCEEEEeCCCChhhccccCHHHHHHHhhC
Confidence 999987 7999999999986 8999999999999999999999999999999999999999984
No 3
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=100.00 E-value=1.5e-49 Score=421.77 Aligned_cols=289 Identities=30% Similarity=0.494 Sum_probs=267.1
Q ss_pred chHHHHHHhhhCCccCCccchHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCccCCccchHHHHHHHHHHHHHHHc
Q psy11993 311 KGMFSLFRGLVGSKNLTKSDMKPILEKMKDHLIAKNVAADIAVKLCDSVALKLEGKVLGTFESVANTVKSTLTDALVQIL 390 (630)
Q Consensus 311 ~~~~~~~~~~~~~~~l~~~~l~~~l~~l~~~Li~~~V~~~ia~~l~~~v~~~l~g~~~~~~~~~~~~v~~~l~~~L~~il 390 (630)
.++.+.|+++.|...|+++++..++++++.+|+++||+..++..|+++|+++..|..+..--++.+.+..++.++|++++
T Consensus 7 ~~l~~~l~kl~g~~~i~E~~i~e~~reir~ALLeADVnl~vVk~fi~~ikera~g~ev~~~l~p~q~~iKiV~eELv~ll 86 (451)
T COG0541 7 DRLSNALKKLRGKGRITEKDVKEALREIRRALLEADVNLKVVKDFIKRIKERALGEEVPKGLTPGQQFIKIVYEELVKLL 86 (451)
T ss_pred HHHHHHHHHhhCCCcCCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHh
Confidence 36778999999999999999999999999999999999999999999999998887666556678888999999999999
Q ss_pred CCCcchhhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccCC
Q psy11993 391 SPKRRVDILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHP 470 (630)
Q Consensus 391 ~~~~~~~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~ 470 (630)
++.. .. ++ +...+|.+|++||..|+||||+++|||.||+..+.+|++++||+||++|++||++.+..++
T Consensus 87 G~~~-~~----~~--l~~~~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~---- 155 (451)
T COG0541 87 GGEN-SE----LN--LAKKPPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVG---- 155 (451)
T ss_pred CCCC-cc----cc--cCCCCCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHcC----
Confidence 9622 11 22 3356789999999999999999999999999999999999999999999999999999987
Q ss_pred CcCCcchhhhHhhhccCCCCHHHHHHHHHHHhhhcCCCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCc
Q psy11993 471 AAKHGGREMVQLFEKGYGKDPAEIAFRAISHARDMHIDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGN 550 (630)
Q Consensus 471 ~~~~tv~env~l~~~~~~~d~~~ia~~ai~~a~~~~~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~ 550 (630)
+++|....+.+|.++++++++.++..++|++++|||||.+.++.||.+|..+..+.+|+++|+|.|+++|+
T Consensus 156 ---------v~~f~~~~~~~Pv~Iak~al~~ak~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~GQ 226 (451)
T COG0541 156 ---------VPFFGSGTEKDPVEIAKAALEKAKEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIGQ 226 (451)
T ss_pred ---------CceecCCCCCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccch
Confidence 56677667789999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHhhcccCCCCCCeeEEEEcccCCcCccHHHHHHHHHHhCCcEEEEecCCCCccCCCCCHHHHHHHhhC
Q psy11993 551 EAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGTGQTYTDLKSLNAKAVVNALMK 630 (630)
Q Consensus 551 Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK~D~~~~~~G~~ls~~~~~g~PI~fvg~Gq~v~DL~~~~~~~~v~~Ll~ 630 (630)
+++++++.|++.+ +++|||+||+|.. .++|++||+.+.+|.||.|+|||+++.||++|+|+++++.||+
T Consensus 227 dA~~~A~aF~e~l----------~itGvIlTKlDGd-aRGGaALS~~~~tg~PIkFiGtGEki~dLE~F~P~R~asRILG 295 (451)
T COG0541 227 DAVNTAKAFNEAL----------GITGVILTKLDGD-ARGGAALSARAITGKPIKFIGTGEKIDDLEPFHPDRFASRILG 295 (451)
T ss_pred HHHHHHHHHhhhc----------CCceEEEEcccCC-CcchHHHhhHHHHCCCeEEEecCCCcccCCCcChHHHHHHhcC
Confidence 9999999999987 7999999999995 9999999999999999999999999999999999999999884
No 4
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=100.00 E-value=3e-46 Score=404.96 Aligned_cols=289 Identities=21% Similarity=0.440 Sum_probs=260.5
Q ss_pred chHHHHHHhhhCCccCCccchHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCccCCccchHHHHHHHHHHHHHHHc
Q psy11993 311 KGMFSLFRGLVGSKNLTKSDMKPILEKMKDHLIAKNVAADIAVKLCDSVALKLEGKVLGTFESVANTVKSTLTDALVQIL 390 (630)
Q Consensus 311 ~~~~~~~~~~~~~~~l~~~~l~~~l~~l~~~Li~~~V~~~ia~~l~~~v~~~l~g~~~~~~~~~~~~v~~~l~~~L~~il 390 (630)
.++.+.|+++.|+..||++++.+.+++++.+|+++||+..++.+|+++|++...|..+....+..+.+..++.+.|++++
T Consensus 7 ~~l~~~~~~l~~~~~l~e~~i~~~l~ei~~aLleaDV~~~vv~~~~~~v~~~~~~~~~~~~~~~~~~v~~~v~~~L~~~l 86 (429)
T TIGR01425 7 SSITSALRSMSNATVIDEEVLNAMLKEICTALLESDVNIKLVRQLRENIKKAINLEEMASGLNKRKMIQHAVFKELCNLV 86 (429)
T ss_pred HHHHHHHHHHhCCCccCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHh
Confidence 46778999999999999999999999999999999999999999999999998877666666677889999999999999
Q ss_pred CCCcchhhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccCC
Q psy11993 391 SPKRRVDILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHP 470 (630)
Q Consensus 391 ~~~~~~~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~ 470 (630)
++.... +....++|.+|+|||++||||||++++||.++...+.+|+++++|+||++|++||+.++...+
T Consensus 87 ~~~~~~-------~~~~~~~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~---- 155 (429)
T TIGR01425 87 DPGVEA-------FTPKKGKQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKAR---- 155 (429)
T ss_pred CCCCcc-------ccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccC----
Confidence 865321 123356789999999999999999999999999888899999999999999999999998876
Q ss_pred CcCCcchhhhHhhhccCCCCHHHHHHHHHHHhhhcCCCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCc
Q psy11993 471 AAKHGGREMVQLFEKGYGKDPAEIAFRAISHARDMHIDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGN 550 (630)
Q Consensus 471 ~~~~tv~env~l~~~~~~~d~~~ia~~ai~~a~~~~~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~ 550 (630)
++++......+|..++.++++.++..++|+|+||||||.+.+..+|.+|.++....+|+.++||.+++.|+
T Consensus 156 ---------vp~~~~~~~~dp~~i~~~~l~~~~~~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq 226 (429)
T TIGR01425 156 ---------IPFYGSYTESDPVKIASEGVEKFKKENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQ 226 (429)
T ss_pred ---------CeEEeecCCCCHHHHHHHHHHHHHhCCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccCh
Confidence 34444344567888888888888878899999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHhhcccCCCCCCeeEEEEcccCCcCccHHHHHHHHHHhCCcEEEEecCCCCccCCCCCHHHHHHHhhC
Q psy11993 551 EAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGTGQTYTDLKSLNAKAVVNALMK 630 (630)
Q Consensus 551 Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK~D~~~~~~G~~ls~~~~~g~PI~fvg~Gq~v~DL~~~~~~~~v~~Ll~ 630 (630)
++.++++.|++.+ +++|+|+||+|++ .++|+++++++.+|+||.|+|+||+|+||+.|+|+++++.||+
T Consensus 227 ~a~~~a~~F~~~~----------~~~g~IlTKlD~~-argG~aLs~~~~t~~PI~fig~Ge~v~Dle~f~p~~~~~rilg 295 (429)
T TIGR01425 227 AAEAQAKAFKDSV----------DVGSVIITKLDGH-AKGGGALSAVAATKSPIIFIGTGEHIDDFEIFKTQPFISKLLG 295 (429)
T ss_pred hHHHHHHHHHhcc----------CCcEEEEECccCC-CCccHHhhhHHHHCCCeEEEcCCCChhhcCcCChHHHHHHHhc
Confidence 9999999998765 6999999999997 8999999999999999999999999999999999999999874
No 5
>PRK14974 cell division protein FtsY; Provisional
Probab=100.00 E-value=1.9e-44 Score=382.10 Aligned_cols=289 Identities=43% Similarity=0.734 Sum_probs=255.7
Q ss_pred chHHHHHHhhhCCccCCccchHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCccCCccchHHHHHHHHHHHHHHHc
Q psy11993 311 KGMFSLFRGLVGSKNLTKSDMKPILEKMKDHLIAKNVAADIAVKLCDSVALKLEGKVLGTFESVANTVKSTLTDALVQIL 390 (630)
Q Consensus 311 ~~~~~~~~~~~~~~~l~~~~l~~~l~~l~~~Li~~~V~~~ia~~l~~~v~~~l~g~~~~~~~~~~~~v~~~l~~~L~~il 390 (630)
.||++-++. ..|+++++++.+++++..|+++||+.++|++|++.++..+.|.....+......++.++.+.|.+++
T Consensus 47 ~~~~~~~~~----~~~~~~~~~~~l~~l~~~Ll~~dv~~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l 122 (336)
T PRK14974 47 PGFFDKAKI----TEIKEKDIEDLLEELELELLESDVALEVAEEILESLKEKLVGKKVKRGEDVEEIVKNALKEALLEVL 122 (336)
T ss_pred cCHHHHHHh----cccCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHhhccCCCccCHHHHHHHHHHHHHHHHh
Confidence 466665553 3489999999999999999999999999999999999999888777777777889999999999999
Q ss_pred CCCcchhhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccCC
Q psy11993 391 SPKRRVDILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHP 470 (630)
Q Consensus 391 ~~~~~~~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~ 470 (630)
.+....+.+..+ ...++|.+++|+|||||||||++++||.++...+.+|.++++|+||.++.+||+.|+..++.
T Consensus 123 ~~~~~~~~~~~~---~~~~~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R~~a~eqL~~~a~~lgv--- 196 (336)
T PRK14974 123 SVGDLFDLIEEI---KSKGKPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRAGAIEQLEEHAERLGV--- 196 (336)
T ss_pred CCCcchhhhhhh---hccCCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCcHHHHHHHHHHHHHcCC---
Confidence 764322221111 13456899999999999999999999999999889999999999999999999999998873
Q ss_pred CcCCcchhhhHhhhccCCCCHHHHHHHHHHHhhhcCCCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCc
Q psy11993 471 AAKHGGREMVQLFEKGYGKDPAEIAFRAISHARDMHIDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGN 550 (630)
Q Consensus 471 ~~~~tv~env~l~~~~~~~d~~~ia~~ai~~a~~~~~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~ 550 (630)
+++...++.++..++.++++++...++|+|+|||+|+++.+..+|.+|.++.++.+|+.+++|+++++|+
T Consensus 197 ----------~v~~~~~g~dp~~v~~~ai~~~~~~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~ 266 (336)
T PRK14974 197 ----------KVIKHKYGADPAAVAYDAIEHAKARGIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGN 266 (336)
T ss_pred ----------ceecccCCCCHHHHHHHHHHHHHhCCCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccch
Confidence 4444556778888888999888888899999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHhhcccCCCCCCeeEEEEcccCCcCccHHHHHHHHHHhCCcEEEEecCCCCccCCCCCHHHHHHHhhC
Q psy11993 551 EAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGTGQTYTDLKSLNAKAVVNALMK 630 (630)
Q Consensus 551 Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK~D~~~~~~G~~ls~~~~~g~PI~fvg~Gq~v~DL~~~~~~~~v~~Ll~ 630 (630)
++++|++.|++.+ +++++|+||+|++ .++|+++++++.+++||.|+|+||+|.||+.|+|+++++.||+
T Consensus 267 d~~~~a~~f~~~~----------~~~giIlTKlD~~-~~~G~~ls~~~~~~~Pi~~i~~Gq~v~Dl~~~~~~~~v~~llg 335 (336)
T PRK14974 267 DAVEQAREFNEAV----------GIDGVILTKVDAD-AKGGAALSIAYVIGKPILFLGVGQGYDDLIPFDPDWFVDKLLG 335 (336)
T ss_pred hHHHHHHHHHhcC----------CCCEEEEeeecCC-CCccHHHHHHHHHCcCEEEEeCCCChhhcccCCHHHHHHHHhC
Confidence 9999999998765 6899999999997 8999999999999999999999999999999999999999985
No 6
>KOG0780|consensus
Probab=100.00 E-value=2.5e-44 Score=373.39 Aligned_cols=288 Identities=26% Similarity=0.484 Sum_probs=265.6
Q ss_pred hHHHHHHhhhCCccCCccchHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCccCCccchHHHHHHHHHHHHHHHcC
Q psy11993 312 GMFSLFRGLVGSKNLTKSDMKPILEKMKDHLIAKNVAADIAVKLCDSVALKLEGKVLGTFESVANTVKSTLTDALVQILS 391 (630)
Q Consensus 312 ~~~~~~~~~~~~~~l~~~~l~~~l~~l~~~Li~~~V~~~ia~~l~~~v~~~l~g~~~~~~~~~~~~v~~~l~~~L~~il~ 391 (630)
.+-+.|+.+.....++++.|..+|++|..+|++.||++.++.+|.++|++.+....+..--.....|..++.++|++++.
T Consensus 9 rI~~a~~~~s~~t~~~~~~l~~~L~eI~~ALLesDV~~~lV~~l~~nir~~i~~~~~~~G~nk~r~i~~~vf~eL~kl~d 88 (483)
T KOG0780|consen 9 RITSAFSRMSNATSIDETALNTMLKEICRALLESDVNPRLVKELRENIRKIINLEKLASGVNKRRIIQKAVFDELVKLLD 88 (483)
T ss_pred hHHHHHHHhccCCcchHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhchhhhccccCHHHHHHHHHHHHHHHHhC
Confidence 56678888888888999999999999999999999999999999999999987665554455678899999999999999
Q ss_pred CCcchhhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccCCC
Q psy11993 392 PKRRVDILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHPA 471 (630)
Q Consensus 392 ~~~~~~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~~ 471 (630)
|... .|....++|.||+|||.+|+||||++.|+|++++..|.++++++.||||++|.+||+.++....
T Consensus 89 p~~~-------~~~~~K~kpsVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~----- 156 (483)
T KOG0780|consen 89 PGKS-------ALQPKKGKPSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKAR----- 156 (483)
T ss_pred CCCc-------ccccccCCCcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhC-----
Confidence 8543 2345678899999999999999999999999999999999999999999999999999998887
Q ss_pred cCCcchhhhHhhhccCCCCHHHHHHHHHHHhhhcCCCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCcc
Q psy11993 472 AKHGGREMVQLFEKGYGKDPAEIAFRAISHARDMHIDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNE 551 (630)
Q Consensus 472 ~~~tv~env~l~~~~~~~d~~~ia~~ai~~a~~~~~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~D 551 (630)
+++|..+...||..++.+.+..++..+||+||+|||||.++...|+.++..+.+...|+.||||.|+..|+.
T Consensus 157 --------iP~ygsyte~dpv~ia~egv~~fKke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQa 228 (483)
T KOG0780|consen 157 --------VPFYGSYTEADPVKIASEGVDRFKKENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQA 228 (483)
T ss_pred --------CeeEecccccchHHHHHHHHHHHHhcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHh
Confidence 567777777899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcccCCCCCCeeEEEEcccCCcCccHHHHHHHHHHhCCcEEEEecCCCCccCCCCCHHHHHHHhhC
Q psy11993 552 AVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGTGQTYTDLKSLNAKAVVNALMK 630 (630)
Q Consensus 552 av~ql~~f~~~l~~~~~~~~~~~i~gIIlTK~D~~~~~~G~~ls~~~~~g~PI~fvg~Gq~v~DL~~~~~~~~v~~Ll~ 630 (630)
+..|++.|++.+ .+.++|+||+|.. .++|.++|++..++.||.|||||+++.||++|+|+.||..||+
T Consensus 229 ae~Qa~aFk~~v----------dvg~vIlTKlDGh-akGGgAlSaVaaTksPIiFIGtGEhmdDlE~F~pk~FvsrlLG 296 (483)
T KOG0780|consen 229 AEAQARAFKETV----------DVGAVILTKLDGH-AKGGGALSAVAATKSPIIFIGTGEHMDDLEPFDPKPFVSRLLG 296 (483)
T ss_pred HHHHHHHHHHhh----------ccceEEEEecccC-CCCCceeeehhhhCCCEEEEecCccccccCCCChHHHHHHHhc
Confidence 999999999887 6999999999997 8999999999999999999999999999999999999999984
No 7
>PRK10867 signal recognition particle protein; Provisional
Probab=100.00 E-value=2.9e-43 Score=383.73 Aligned_cols=289 Identities=31% Similarity=0.508 Sum_probs=256.2
Q ss_pred chHHHHHHhhhCCccCCccchHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCccCCccchHHHHHHHHHHHHHHHc
Q psy11993 311 KGMFSLFRGLVGSKNLTKSDMKPILEKMKDHLIAKNVAADIAVKLCDSVALKLEGKVLGTFESVANTVKSTLTDALVQIL 390 (630)
Q Consensus 311 ~~~~~~~~~~~~~~~l~~~~l~~~l~~l~~~Li~~~V~~~ia~~l~~~v~~~l~g~~~~~~~~~~~~v~~~l~~~L~~il 390 (630)
.++.+.|+++.|+..++++++++.+++++.+|+++||+.+++.+|++.|++.+.+......-+..+.+..++.+.|.+++
T Consensus 7 ~~l~~~~~~l~~~~~~~e~~i~~~l~ei~~~Ll~aDV~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~el~~~l 86 (433)
T PRK10867 7 DRLSSAFKKLRGKGRLTEADIKEALREVRLALLEADVNLPVVKDFIARVKEKAVGQEVLKSLTPGQQVIKIVNDELVEIL 86 (433)
T ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHhhccccccCCcHHHHHHHHHHHHHHHh
Confidence 36778999999999999999999999999999999999999999999999988776554444456778899999999999
Q ss_pred CCCcchhhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhc-CCeEEEeecccCCccHHHHHHHHHhhhcccC
Q psy11993 391 SPKRRVDILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIEN-NLNVLIAACDTFRAGAVEQLRTHVRHLCSLH 469 (630)
Q Consensus 391 ~~~~~~~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~-ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~ 469 (630)
++.... + ....++|.+|+|+||+||||||++++||.++... +.+|++++||+||++|++||+.|+...+
T Consensus 87 ~~~~~~-----~--~~~~~~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~aa~eQL~~~a~~~g--- 156 (433)
T PRK10867 87 GGENSE-----L--NLAAKPPTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAAIEQLKTLGEQIG--- 156 (433)
T ss_pred CCCcce-----e--eecCCCCEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchHHHHHHHHHHhhcC---
Confidence 753211 1 2234568999999999999999999999999888 8899999999999999999999998877
Q ss_pred CCcCCcchhhhHhhhccCCCCHHHHHHHHHHHhhhcCCCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccC
Q psy11993 470 PAAKHGGREMVQLFEKGYGKDPAEIAFRAISHARDMHIDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVG 549 (630)
Q Consensus 470 ~~~~~tv~env~l~~~~~~~d~~~ia~~ai~~a~~~~~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g 549 (630)
++++......+|..++.++++.+...++|+|+|||+||.+.+..+|.+|.++.....|+.+++|.++++|
T Consensus 157 ----------v~v~~~~~~~dp~~i~~~a~~~a~~~~~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~g 226 (433)
T PRK10867 157 ----------VPVFPSGDGQDPVDIAKAALEEAKENGYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTG 226 (433)
T ss_pred ----------CeEEecCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccH
Confidence 3444434456888888888888888889999999999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcccCCcCccHHHHHHHHHHhCCcEEEEecCCCCccCCCCCHHHHHHHhh
Q psy11993 550 NEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGTGQTYTDLKSLNAKAVVNALM 629 (630)
Q Consensus 550 ~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK~D~~~~~~G~~ls~~~~~g~PI~fvg~Gq~v~DL~~~~~~~~v~~Ll 629 (630)
++++++++.|++.+ +++|+|+||+|++ .++|+++++++.+++||.|+|+||++.||++|+|+++++.||
T Consensus 227 q~av~~a~~F~~~~----------~i~giIlTKlD~~-~rgG~alsi~~~~~~PI~fig~Ge~v~DLe~f~p~~~~~~il 295 (433)
T PRK10867 227 QDAVNTAKAFNEAL----------GLTGVILTKLDGD-ARGGAALSIRAVTGKPIKFIGTGEKLDDLEPFHPDRMASRIL 295 (433)
T ss_pred HHHHHHHHHHHhhC----------CCCEEEEeCccCc-ccccHHHHHHHHHCcCEEEEeCCCccccCccCCHHHHHHHHh
Confidence 99999999998654 6899999999996 899999999999999999999999999999999999999998
Q ss_pred C
Q psy11993 630 K 630 (630)
Q Consensus 630 ~ 630 (630)
+
T Consensus 296 g 296 (433)
T PRK10867 296 G 296 (433)
T ss_pred C
Confidence 4
No 8
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=100.00 E-value=4.4e-42 Score=375.22 Aligned_cols=286 Identities=26% Similarity=0.422 Sum_probs=249.8
Q ss_pred chHHHHHHhhhCCccCCccchHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCccCCccchHHHHHHHHHHHHHHHc
Q psy11993 311 KGMFSLFRGLVGSKNLTKSDMKPILEKMKDHLIAKNVAADIAVKLCDSVALKLEGKVLGTFESVANTVKSTLTDALVQIL 390 (630)
Q Consensus 311 ~~~~~~~~~~~~~~~l~~~~l~~~l~~l~~~Li~~~V~~~ia~~l~~~v~~~l~g~~~~~~~~~~~~v~~~l~~~L~~il 390 (630)
.++.+.|+++.|++.||++++.+++++++.+|+++||+.+++.+|++.|++.+.+..........+.+..++.+.|.+++
T Consensus 3 ~~l~~~~~~l~~~~~l~e~~i~~~l~ei~~aLl~adV~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~L~~~l 82 (437)
T PRK00771 3 ESLRDALKKLAGKSRIDEKTVKEVVKDIQRALLQADVNVKLVKELSKSIKERALEEEPPKGLTPREHVIKIVYEELVKLL 82 (437)
T ss_pred hHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHhcccccccCCcHHHHHHHHHHHHHHHh
Confidence 35778999999999999999999999999999999999999999999999988776544444456677789999999999
Q ss_pred CCCcchhhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccCC
Q psy11993 391 SPKRRVDILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHP 470 (630)
Q Consensus 391 ~~~~~~~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~ 470 (630)
++..... ... ++|.+++|+|++|+||||++++||.++...+.+|++++||+||+++.+||+.++..++.
T Consensus 83 ~~~~~~~-------~~~-~~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~gv--- 151 (437)
T PRK00771 83 GEETEPL-------VLP-LKPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGV--- 151 (437)
T ss_pred CCCcccc-------ccC-CCCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHHHHcCC---
Confidence 8643211 112 46799999999999999999999999998889999999999999999999999988863
Q ss_pred CcCCcchhhhHhhhccCCCCHHHHHHHHHHHhhhcCCCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCc
Q psy11993 471 AAKHGGREMVQLFEKGYGKDPAEIAFRAISHARDMHIDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGN 550 (630)
Q Consensus 471 ~~~~tv~env~l~~~~~~~d~~~ia~~ai~~a~~~~~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~ 550 (630)
+++......++..++.++++.+.. +|+|+|||||+.+.+..+|.+|..+.....|+.+++|.+++.|+
T Consensus 152 ----------p~~~~~~~~d~~~i~~~al~~~~~--~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq 219 (437)
T PRK00771 152 ----------PFYGDPDNKDAVEIAKEGLEKFKK--ADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQ 219 (437)
T ss_pred ----------cEEecCCccCHHHHHHHHHHHhhc--CCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccH
Confidence 333333345777777778776654 59999999999999999999999998889999999999999999
Q ss_pred cHHHHHHHHHHHHhhcccCCCCCCeeEEEEcccCCcCccHHHHHHHHHHhCCcEEEEecCCCCccCCCCCHHHHHHHhhC
Q psy11993 551 EAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGTGQTYTDLKSLNAKAVVNALMK 630 (630)
Q Consensus 551 Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK~D~~~~~~G~~ls~~~~~g~PI~fvg~Gq~v~DL~~~~~~~~v~~Ll~ 630 (630)
+++++++.|++.+ +++|+|+||+|++ .++|+++|+++.+++||.|+|+||+|.||++|+|+++++.||+
T Consensus 220 ~av~~a~~F~~~l----------~i~gvIlTKlD~~-a~~G~~ls~~~~~~~Pi~fig~Ge~v~Dle~f~~~~~~~~ilg 288 (437)
T PRK00771 220 QAKNQAKAFHEAV----------GIGGIIITKLDGT-AKGGGALSAVAETGAPIKFIGTGEKIDDLERFDPDRFISRLLG 288 (437)
T ss_pred HHHHHHHHHHhcC----------CCCEEEEecccCC-CcccHHHHHHHHHCcCEEEEecCCCcccCCcCCHHHHHHHHhC
Confidence 9999998887655 6899999999997 8999999999999999999999999999999999999999884
No 9
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=100.00 E-value=7.7e-42 Score=372.41 Aligned_cols=289 Identities=30% Similarity=0.515 Sum_probs=254.5
Q ss_pred chHHHHHHhhhCCccCCccchHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCccCCccchHHHHHHHHHHHHHHHc
Q psy11993 311 KGMFSLFRGLVGSKNLTKSDMKPILEKMKDHLIAKNVAADIAVKLCDSVALKLEGKVLGTFESVANTVKSTLTDALVQIL 390 (630)
Q Consensus 311 ~~~~~~~~~~~~~~~l~~~~l~~~l~~l~~~Li~~~V~~~ia~~l~~~v~~~l~g~~~~~~~~~~~~v~~~l~~~L~~il 390 (630)
.++.+.|+++.|++.+|++++.+.+++++.+|+++||+.+++.+|++.+++.+.|..........+.+..++.+.|++++
T Consensus 6 ~~~~~~~~~l~~~~~~~e~~i~~~l~ei~~~Ll~aDV~~~~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~~eL~~~l 85 (428)
T TIGR00959 6 ERLQRIFKKLSGRGTITEKNIKEALREIRLALLEADVNLQVVKDFIKKVKEKALGQEVLKSLSPGQQFIKIVHEELVAIL 85 (428)
T ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHhccccccccCCcHHHHHHHHHHHHHHHh
Confidence 46778999999999999999999999999999999999999999999999988776544444456678889999999999
Q ss_pred CCCcchhhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHH-hcCCeEEEeecccCCccHHHHHHHHHhhhcccC
Q psy11993 391 SPKRRVDILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLI-ENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLH 469 (630)
Q Consensus 391 ~~~~~~~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~-~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~ 469 (630)
++... .+....++|.+++|+|++||||||++++||.++. ..+.+|++++||+||+++.+||+.++..++.
T Consensus 86 ~~~~~-------~~~~~~~~p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~~a~~QL~~~a~~~gv-- 156 (428)
T TIGR00959 86 GGENA-------SLNLAKKPPTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRPAAIEQLKVLGQQVGV-- 156 (428)
T ss_pred CCCCc-------ccccCCCCCEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccchHHHHHHHHHHHhcCC--
Confidence 86431 1123356789999999999999999999999986 5788999999999999999999999988773
Q ss_pred CCcCCcchhhhHhhhccCCCCHHHHHHHHHHHhhhcCCCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccC
Q psy11993 470 PAAKHGGREMVQLFEKGYGKDPAEIAFRAISHARDMHIDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVG 549 (630)
Q Consensus 470 ~~~~~tv~env~l~~~~~~~d~~~ia~~ai~~a~~~~~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g 549 (630)
+++......+|.+++.++++.+...++|+|+|||+|+.+.+..++.+|.++.....|+.+++|.++++|
T Consensus 157 -----------p~~~~~~~~~P~~i~~~al~~~~~~~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tg 225 (428)
T TIGR00959 157 -----------PVFALGKGQSPVEIARRALEYAKENGFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTG 225 (428)
T ss_pred -----------ceEecCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccch
Confidence 333333456788888888888877889999999999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcccCCcCccHHHHHHHHHHhCCcEEEEecCCCCccCCCCCHHHHHHHhh
Q psy11993 550 NEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGTGQTYTDLKSLNAKAVVNALM 629 (630)
Q Consensus 550 ~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK~D~~~~~~G~~ls~~~~~g~PI~fvg~Gq~v~DL~~~~~~~~v~~Ll 629 (630)
+++++++..|++.+ +++|+|+||+|++ .++|+++++++.+++||.|+|+||+++||++|+|+++++.||
T Consensus 226 q~~~~~a~~f~~~v----------~i~giIlTKlD~~-~~~G~~lsi~~~~~~PI~fi~~Ge~i~dl~~f~p~~~~~~iL 294 (428)
T TIGR00959 226 QDAVNTAKTFNERL----------GLTGVVLTKLDGD-ARGGAALSVRSVTGKPIKFIGVGEKIDDLEPFHPERMASRIL 294 (428)
T ss_pred HHHHHHHHHHHhhC----------CCCEEEEeCccCc-ccccHHHHHHHHHCcCEEEEeCCCChhhCccCCHHHHHHHHh
Confidence 99999999988655 6899999999996 899999999999999999999999999999999999999998
Q ss_pred C
Q psy11993 630 K 630 (630)
Q Consensus 630 ~ 630 (630)
+
T Consensus 295 g 295 (428)
T TIGR00959 295 G 295 (428)
T ss_pred C
Confidence 4
No 10
>PF04086 SRP-alpha_N: Signal recognition particle, alpha subunit, N-terminal; InterPro: IPR007222 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. This entry represents the alpha subunit of the SR receptor.; GO: 0003924 GTPase activity, 0005047 signal recognition particle binding, 0005525 GTP binding, 0006184 GTP catabolic process, 0006886 intracellular protein transport, 0005785 signal recognition particle receptor complex; PDB: 2FH5_A 2GO5_1.
Probab=100.00 E-value=2.6e-44 Score=374.13 Aligned_cols=226 Identities=45% Similarity=0.619 Sum_probs=74.8
Q ss_pred CchHHHHHHHhhhccccCCCceeecCeEEEEEEeccccEEEEEEeccccchhcHHHHHHHHHHHHHHhhhhhhcCCCcc-
Q psy11993 26 TPSLNALIKSVILQERGGNQVFEHNGLVLKHKLDNEFDLVFVVGFQKILQLSYVDKLLDDVHLEFRDKYKNELGSDMHL- 104 (630)
Q Consensus 26 ~~~in~li~~~~leer~~~~~~~~~~~~l~w~~~n~~~lvfv~~yq~~l~l~y~d~ll~~~~~~f~~~~~~~l~~~~~~- 104 (630)
++|||+||++||||||+++.+|+||+|+|||+|+|||+||||||||+||||+|||+||++|+++|+++|+++|.+....
T Consensus 1 ~~~in~LI~~vlleeR~~~~~~~~d~y~lkw~~~Ne~~LvfVvvYq~il~l~yvd~LL~~v~~~F~~~y~~~l~~~~~~~ 80 (279)
T PF04086_consen 1 TSPINALIRDVLLEERSGNSSFTYDNYTLKWTLDNELGLVFVVVYQKILQLTYVDKLLDDVKKEFVKLYKNQLKQLKPNT 80 (279)
T ss_dssp --HHHHHHHHTGGG-------------EEEEEEETTTTEEEEEEES-GGGHHHHHHHHHHHHHHHHHHTHHHHHSSSTHH
T ss_pred CchHHHHHHHhheeeccCCCceeEcCEEEEEEEeccCCEEEeeeecccccchHHHHHHHHHHHHHHHHHhHHhhcccccc
Confidence 4799999999999999999999999999999999999999999999999999999999999999999999998743222
Q ss_pred --eec-CccHHHHHHHHHHHHhhhhhhcCcccccchhhhcccccchhhhhhccCccccCCCc-ccccCCcccCcCCCCCC
Q psy11993 105 --YDY-DFESTYNVLLKEAEEWSKVQACIPKQMRTFEESSKSKKTIASMIIDKNKKEEKSVP-SKKKGKAVETKVEPVTP 180 (630)
Q Consensus 105 --~~~-~f~~~f~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 180 (630)
..| +||++|+++|+++|+++....+.++.|++|+++.++++++++|++..+..+..... ...............+.
T Consensus 81 ~~~~~~~Fd~~F~~~l~~~e~~~~~~~~~~~~~~~~~~s~k~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (279)
T PF04086_consen 81 SINEYFDFDEEFDQLLKELEARSKSQKRSPKAMRSFEESKKSKKTVASMIEDPGKEPGEEGKKDKKKGKESKKSAESKPA 160 (279)
T ss_dssp HHT-----HHHHHHHHHHHCCCTT--------------------------------------------------------
T ss_pred ccccchhHHHHHHHHHHHHHHHhccccccccccccccccccccccccccCCCCCCCCccccccccccccccccccccCCC
Confidence 244 79999999999999998876655789999999999999999988754433311100 00000000000000011
Q ss_pred CCCCCCCC---CCChhHHHH----HHHHHHHHHhCCCCCC-C--CCCCCCCCcccCCCCcccCCCCCCCCcccccccCCC
Q psy11993 181 PSPVQNGD---AGIEEDIIM----INRQKLAMKMGSPKNK-T--KPKTPKANAKEGKKPRIWELSGDQRDLSTLEYTKDK 250 (630)
Q Consensus 181 ~~~~~~~~---~~~~~~~~~----~~~~~~~~k~~~~~~~-~--~~~~~~~~~k~~k~~r~w~~~~~~~~~~~ld~s~~~ 250 (630)
..+..+.+ .....+.+. ++|++++.++.+.... . +.+.+++++|++|++|+|+.++...++..||||...
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~g~~~~r~~~~~k~~~~~~~~~~~~~~~~~~~kk~~Kk~R~Wd~~g~~~d~~~LDyS~~~ 240 (279)
T PF04086_consen 161 SSPAGSSPATPSLLKEKEGPGGKRSRREKKAAKLKSSKSSGDEKSSKKKKKPKKKGKKMRKWDDGGTEKDAEALDYSDPD 240 (279)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCcccccccccccccccccccchhhhhhhhhccccccccCcccccCCCCCCcccCCCCCCccCCCCCCCchhhcCCCCCC
Confidence 11111111 111222222 4456656655432111 1 122223346778999999999888899999999444
Q ss_pred C
Q psy11993 251 P 251 (630)
Q Consensus 251 ~ 251 (630)
.
T Consensus 241 ~ 241 (279)
T PF04086_consen 241 A 241 (279)
T ss_dssp -
T ss_pred C
Confidence 3
No 11
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=100.00 E-value=2.1e-41 Score=357.54 Aligned_cols=281 Identities=33% Similarity=0.542 Sum_probs=238.8
Q ss_pred chHHHHHHhhhCCccCCccchHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCccCCccchHHHHHHHHHHHHHHHc
Q psy11993 311 KGMFSLFRGLVGSKNLTKSDMKPILEKMKDHLIAKNVAADIAVKLCDSVALKLEGKVLGTFESVANTVKSTLTDALVQIL 390 (630)
Q Consensus 311 ~~~~~~~~~~~~~~~l~~~~l~~~l~~l~~~Li~~~V~~~ia~~l~~~v~~~l~g~~~~~~~~~~~~v~~~l~~~L~~il 390 (630)
.++.+.++++++++.++++ .+++++++|++.||++++|.+|++.++..+.+....+ ...++..+.+.|.+++
T Consensus 29 ~~~~~~~~~l~~~~~~~~~----~~~~l~~~L~~~dv~~~~a~~i~~~~~~~~~~~~~~~----~~~~~~~l~~~l~~~l 100 (318)
T PRK10416 29 ENFGEGINGLFAKKKIDED----LLEELEELLIEADVGVETTEEIIEELRERVKRKNLKD----PEELKELLKEELAEIL 100 (318)
T ss_pred HHHHHHHHHHhCCCCCCHH----HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHhccCCCC----HHHHHHHHHHHHHHHh
Confidence 4667788888887788876 6689999999999999999999999998876543322 3457788888888888
Q ss_pred CCCcchhhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccCC
Q psy11993 391 SPKRRVDILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHP 470 (630)
Q Consensus 391 ~~~~~~~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~ 470 (630)
.+... .+....++|++++|+|||||||||++++||+++.+.+++|+++++|+||++|.+|++.|+...+.
T Consensus 101 ~~~~~-------~~~~~~~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i--- 170 (318)
T PRK10416 101 EPVEK-------PLNIEEKKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGV--- 170 (318)
T ss_pred CcCCc-------cccccCCCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCc---
Confidence 64321 11122345699999999999999999999999999999999999999999999999999888763
Q ss_pred CcCCcchhhhHhhhccCCCCHHHHHHHHHHHhhhcCCCeeeeccccchhchHHHHHHHHhhhhh------cCCCeEEEEe
Q psy11993 471 AAKHGGREMVQLFEKGYGKDPAEIAFRAISHARDMHIDVVLIDTAGRMQDNEPLMRALAKLVKV------NQPDLLLFVG 544 (630)
Q Consensus 471 ~~~~tv~env~l~~~~~~~d~~~ia~~ai~~a~~~~~D~vlIDTaGr~~~~~~L~~aL~kl~~~------~~Pd~VLlV~ 544 (630)
+++...++.++...+.+++..+...+||+|+|||+|+++.+..+|.+|.++.++ ..|+.+++|+
T Consensus 171 ----------~~~~~~~~~dpa~~v~~~l~~~~~~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl 240 (318)
T PRK10416 171 ----------PVIAQKEGADPASVAFDAIQAAKARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVL 240 (318)
T ss_pred ----------eEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEE
Confidence 333334556777777777777777889999999999999999999999988775 3588999999
Q ss_pred ccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcccCCcCccHHHHHHHHHHhCCcEEEEecCCCCccCCCCCHHHH
Q psy11993 545 EALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGTGQTYTDLKSLNAKAV 624 (630)
Q Consensus 545 E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK~D~~~~~~G~~ls~~~~~g~PI~fvg~Gq~v~DL~~~~~~~~ 624 (630)
++++|++.+.|+..|++.+ +++|+|+||+|++ .++|.++++++.+++||.|+|+||++.||+.|+|+++
T Consensus 241 ~a~~g~~~~~~a~~f~~~~----------~~~giIlTKlD~t-~~~G~~l~~~~~~~~Pi~~v~~Gq~~~Dl~~~~~~~~ 309 (318)
T PRK10416 241 DATTGQNALSQAKAFHEAV----------GLTGIILTKLDGT-AKGGVVFAIADELGIPIKFIGVGEGIDDLQPFDAEEF 309 (318)
T ss_pred ECCCChHHHHHHHHHHhhC----------CCCEEEEECCCCC-CCccHHHHHHHHHCCCEEEEeCCCChhhCccCCHHHH
Confidence 9999999999998887655 6999999999998 8999999999999999999999999999999999999
Q ss_pred HHHhhC
Q psy11993 625 VNALMK 630 (630)
Q Consensus 625 v~~Ll~ 630 (630)
++.||+
T Consensus 310 ~~~ll~ 315 (318)
T PRK10416 310 VDALLG 315 (318)
T ss_pred HHHHhC
Confidence 999985
No 12
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=100.00 E-value=8.7e-40 Score=338.68 Aligned_cols=265 Identities=37% Similarity=0.566 Sum_probs=225.9
Q ss_pred chHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCccCCccchHHHHHHHHHHHHHHHcCCCcchhhhhhhhhhhccC
Q psy11993 330 DMKPILEKMKDHLIAKNVAADIAVKLCDSVALKLEGKVLGTFESVANTVKSTLTDALVQILSPKRRVDILRDALEAKKQG 409 (630)
Q Consensus 330 ~l~~~l~~l~~~Li~~~V~~~ia~~l~~~v~~~l~g~~~~~~~~~~~~v~~~l~~~L~~il~~~~~~~iL~~i~~~i~~g 409 (630)
.+++.+++++..|+++||+++++++|++++.+.+.+...... ..+...+.+.|.+++++... .+....+
T Consensus 2 ~~~~~~~~l~~~L~~~dv~~~~~~~i~~~~~~~~~~~~~~~~----~~~~~~~~e~l~~~~~~~~~-------~~~~~~~ 70 (272)
T TIGR00064 2 DDEDFFEELEEILLESDVGYEVVEKIIEALKKELKGKKVKDA----ELLKEILKEYLKEILKETDL-------ELIVEEN 70 (272)
T ss_pred ccHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHhhccCCCH----HHHHHHHHHHHHHHHcccch-------hhcccCC
Confidence 456799999999999999999999999999998876644433 34556667777777654210 1222345
Q ss_pred CCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccCCCcCCcchhhhHhhhccCCC
Q psy11993 410 RPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHPAAKHGGREMVQLFEKGYGK 489 (630)
Q Consensus 410 ~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~~~~~tv~env~l~~~~~~~ 489 (630)
+|++++|+||+||||||++++||.++...+++|+++++|+||.++.+|++.|+...+. .++...++.
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~r~~a~~ql~~~~~~~~i-------------~~~~~~~~~ 137 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFRAAAIEQLEEWAKRLGV-------------DVIKQKEGA 137 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCCCHHHHHHHHHHHHhCCe-------------EEEeCCCCC
Confidence 5799999999999999999999999988889999999999999999999999998873 333333456
Q ss_pred CHHHHHHHHHHHhhhcCCCeeeeccccchhchHHHHHHHHhhhhhcC------CCeEEEEeccccCccHHHHHHHHHHHH
Q psy11993 490 DPAEIAFRAISHARDMHIDVVLIDTAGRMQDNEPLMRALAKLVKVNQ------PDLLLFVGEALVGNEAVDQLVKFNNAM 563 (630)
Q Consensus 490 d~~~ia~~ai~~a~~~~~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~------Pd~VLlV~E~~~g~Dav~ql~~f~~~l 563 (630)
++.....+++..+...+||+|+|||+|+.+.+..+|.+|.++....+ |+.+++|.++++|.+.+.++..|.+.+
T Consensus 138 dp~~~~~~~l~~~~~~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~~~~~~~~~f~~~~ 217 (272)
T TIGR00064 138 DPAAVAFDAIQKAKARNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQNALEQAKVFNEAV 217 (272)
T ss_pred CHHHHHHHHHHHHHHCCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCHHHHHHHHHHHhhC
Confidence 77777777777777788999999999999999999999999988777 999999999999999999988887654
Q ss_pred hhcccCCCCCCeeEEEEcccCCcCccHHHHHHHHHHhCCcEEEEecCCCCccCCCCCHHHHHHHhh
Q psy11993 564 ADHSLSDNPHLIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGTGQTYTDLKSLNAKAVVNALM 629 (630)
Q Consensus 564 ~~~~~~~~~~~i~gIIlTK~D~~~~~~G~~ls~~~~~g~PI~fvg~Gq~v~DL~~~~~~~~v~~Ll 629 (630)
+++|+|+||+|++ .++|.++++++.+++||.|+|+||++.||+.|+|+++++.||
T Consensus 218 ----------~~~g~IlTKlDe~-~~~G~~l~~~~~~~~Pi~~~~~Gq~~~dl~~~~~~~~~~~ll 272 (272)
T TIGR00064 218 ----------GLTGIILTKLDGT-AKGGIILSIAYELKLPIKFIGVGEKIDDLAPFDADWFVEALF 272 (272)
T ss_pred ----------CCCEEEEEccCCC-CCccHHHHHHHHHCcCEEEEeCCCChHhCccCCHHHHHHHhC
Confidence 6899999999997 899999999999999999999999987999999999999986
No 13
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=100.00 E-value=1.4e-38 Score=314.87 Aligned_cols=196 Identities=38% Similarity=0.580 Sum_probs=177.6
Q ss_pred CeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccCCCcCCcchhhhHhhhccCCCC
Q psy11993 411 PFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHPAAKHGGREMVQLFEKGYGKD 490 (630)
Q Consensus 411 p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~~~~~tv~env~l~~~~~~~d 490 (630)
|.+++||||||||||||++|||.++...+.+|.++++|+||.+|++||+.|++.++. +++......+
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~v-------------p~~~~~~~~~ 67 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGV-------------PFYVARTESD 67 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTE-------------EEEESSTTSC
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhcc-------------ccchhhcchh
Confidence 689999999999999999999999988899999999999999999999999999984 4444444567
Q ss_pred HHHHHHHHHHHhhhcCCCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCccHHHHHHHHHHHHhhcccCC
Q psy11993 491 PAEIAFRAISHARDMHIDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQLVKFNNAMADHSLSD 570 (630)
Q Consensus 491 ~~~ia~~ai~~a~~~~~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~Dav~ql~~f~~~l~~~~~~~ 570 (630)
+.+++.++++.+...++|+|+|||+|+.+.+..++.+|.++.....|+++++|.+++.+.+.++++..|.+.+
T Consensus 68 ~~~~~~~~l~~~~~~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~~~~~~~~~~------- 140 (196)
T PF00448_consen 68 PAEIAREALEKFRKKGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLEQALAFYEAF------- 140 (196)
T ss_dssp HHHHHHHHHHHHHHTTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHHHHHHHHHHS-------
T ss_pred hHHHHHHHHHHHhhcCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHHHHHHHhhcc-------
Confidence 8888888998888888999999999999999999999999999999999999999999999999888887665
Q ss_pred CCCCeeEEEEcccCCcCccHHHHHHHHHHhCCcEEEEecCCCCccCCCCCHHHHHHHhhC
Q psy11993 571 NPHLIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGTGQTYTDLKSLNAKAVVNALMK 630 (630)
Q Consensus 571 ~~~~i~gIIlTK~D~~~~~~G~~ls~~~~~g~PI~fvg~Gq~v~DL~~~~~~~~v~~Ll~ 630 (630)
+++++|+||+||+ .++|.++++++.+++||.|+++||+|.||+.|+++++++.||+
T Consensus 141 ---~~~~lIlTKlDet-~~~G~~l~~~~~~~~Pi~~it~Gq~V~Dl~~~~~~~l~~~llg 196 (196)
T PF00448_consen 141 ---GIDGLILTKLDET-ARLGALLSLAYESGLPISYITTGQRVDDLEPASPERLASRLLG 196 (196)
T ss_dssp ---STCEEEEESTTSS-STTHHHHHHHHHHTSEEEEEESSSSTTGEEE-THHHHHHHHHT
T ss_pred ---cCceEEEEeecCC-CCcccceeHHHHhCCCeEEEECCCChhcCccCCHHHHHHHhcC
Confidence 6899999999997 8999999999999999999999999999999999999999985
No 14
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=100.00 E-value=1e-35 Score=316.41 Aligned_cols=258 Identities=22% Similarity=0.362 Sum_probs=206.4
Q ss_pred cchHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCccCCccchHHHHHHHHHHHHHHHcCCCcchhhhhhhhhhhcc
Q psy11993 329 SDMKPILEKMKDHLIAKNVAADIAVKLCDSVALKLEGKVLGTFESVANTVKSTLTDALVQILSPKRRVDILRDALEAKKQ 408 (630)
Q Consensus 329 ~~l~~~l~~l~~~Li~~~V~~~ia~~l~~~v~~~l~g~~~~~~~~~~~~v~~~l~~~L~~il~~~~~~~iL~~i~~~i~~ 408 (630)
+..+..+..++..|++.+|.++++.+|.+.+........... ...+...+.+.+..++.... + ..
T Consensus 174 ~~~~~~~~~i~~~L~~~dV~~~~~~~ll~~~~~~~~~~~~~~----~~~~~~~l~~~l~~~l~~~~-------~----~~ 238 (436)
T PRK11889 174 ESVPFIIQKVIRMLEQNDVEQYFIHAYAEKLKVKFENATMIT----EEEVIEYILEDMRSHFNTEN-------V----FE 238 (436)
T ss_pred cccchHHHHHHHHHHHCCCCHHHHHHHHHHHHhhhcccccCC----HHHHHHHHHHHHHHHhcccc-------c----cc
Confidence 344456667999999999999999999999886543321111 23445555666665554211 0 12
Q ss_pred CCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccCCCcCCcchhhhHhhhccCC
Q psy11993 409 GRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHPAAKHGGREMVQLFEKGYG 488 (630)
Q Consensus 409 g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~~~~~tv~env~l~~~~~~ 488 (630)
.+|.+|+|+|||||||||++++||..+...+.+|.++++|+||+++++||+.|+..++.+ ++. .
T Consensus 239 ~~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgip-------------v~v---~ 302 (436)
T PRK11889 239 KEVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFE-------------VIA---V 302 (436)
T ss_pred cCCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCc-------------EEe---c
Confidence 235899999999999999999999999888889999999999999999999999988742 221 1
Q ss_pred CCHHHHHHHHHHHhhh-cCCCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccC-ccHHHHHHHHHHHHhhc
Q psy11993 489 KDPAEIAFRAISHARD-MHIDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVG-NEAVDQLVKFNNAMADH 566 (630)
Q Consensus 489 ~d~~~ia~~ai~~a~~-~~~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g-~Dav~ql~~f~~~l~~~ 566 (630)
.++..+. +++..+.. .++|+|+|||+|+++.+..++++|.+++....|+.++||++++++ ++..+++..|+.
T Consensus 303 ~d~~~L~-~aL~~lk~~~~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~~d~~~i~~~F~~----- 376 (436)
T PRK11889 303 RDEAAMT-RALTYFKEEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMIEIITNFKD----- 376 (436)
T ss_pred CCHHHHH-HHHHHHHhccCCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccChHHHHHHHHHhcC-----
Confidence 2455544 56655553 469999999999999999999999999988899999999998765 466777666653
Q ss_pred ccCCCCCCeeEEEEcccCCcCccHHHHHHHHHHhCCcEEEEecCCCCc-cCCCCCHHHHHHHhhC
Q psy11993 567 SLSDNPHLIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGTGQTYT-DLKSLNAKAVVNALMK 630 (630)
Q Consensus 567 ~~~~~~~~i~gIIlTK~D~~~~~~G~~ls~~~~~g~PI~fvg~Gq~v~-DL~~~~~~~~v~~Ll~ 630 (630)
.+++++|+||+|++ .++|.+++++..+++||+|+|+||+|| ||+.++++.++++||+
T Consensus 377 ------~~idglI~TKLDET-~k~G~iLni~~~~~lPIsyit~GQ~VPeDI~~A~~~~L~~~llg 434 (436)
T PRK11889 377 ------IHIDGIVFTKFDET-ASSGELLKIPAVSSAPIVLMTDGQDVKKNIHIATAEHLAKQMLQ 434 (436)
T ss_pred ------CCCCEEEEEcccCC-CCccHHHHHHHHHCcCEEEEeCCCCCCcchhhCCHHHHHHHHhc
Confidence 37999999999998 799999999999999999999999999 9999999999999985
No 15
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=100.00 E-value=5.2e-35 Score=314.79 Aligned_cols=266 Identities=17% Similarity=0.243 Sum_probs=209.1
Q ss_pred CccCCccchHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCccCCccchHHHHHHHHHHHHHHHcCCCcchhhhhhh
Q psy11993 323 SKNLTKSDMKPILEKMKDHLIAKNVAADIAVKLCDSVALKLEGKVLGTFESVANTVKSTLTDALVQILSPKRRVDILRDA 402 (630)
Q Consensus 323 ~~~l~~~~l~~~l~~l~~~Li~~~V~~~ia~~l~~~v~~~l~g~~~~~~~~~~~~v~~~l~~~L~~il~~~~~~~iL~~i 402 (630)
+++|+++++.+.+..+++.|++.||++++|++|++.+...+.+.....+.. +...+.+.|...+.... +.+.
T Consensus 145 ~~~i~~~~~~~~~~~L~~~Ll~~gV~~~la~~Li~~l~~~~~~~~~~~~~~----~~~~l~~~L~~~l~~~~--~~~~-- 216 (432)
T PRK12724 145 ETTIVRKEKDSPLQRLGERLVREGMSQSYVEEMASKLEERLSPVDQGRNHN----VTERAVTYLEERVSVDS--DLFS-- 216 (432)
T ss_pred cccccHhhhhhHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhccccccchHH----HHHHHHHHHHHhcccch--hhhh--
Confidence 568899999999999999999999999999999999998776544443332 44455555665554221 1111
Q ss_pred hhhhccCCCeEEEEEccCCCChHHHHHHHHHHH-HhcCCeEEEeecccCCccHHHHHHHHHhhhcccCCCcCCcchhhhH
Q psy11993 403 LEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWL-IENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHPAAKHGGREMVQ 481 (630)
Q Consensus 403 ~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l-~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~~~~~tv~env~ 481 (630)
.....++.+++|+||+||||||++++||..+ ...+.+|.++++|+||+++.+|++.|+..++.+...
T Consensus 217 --~~g~~~~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~---------- 284 (432)
T PRK12724 217 --GTGKNQRKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYP---------- 284 (432)
T ss_pred --hcccCCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeee----------
Confidence 0111345799999999999999999999755 566789999999999999999999999888742210
Q ss_pred hhhccCCCCHHHHHHHHHHHhhhcCCCeeeeccccchhchHHHHHHHHhhhhhc---CCCeEEEEeccccCccHHHHHHH
Q psy11993 482 LFEKGYGKDPAEIAFRAISHARDMHIDVVLIDTAGRMQDNEPLMRALAKLVKVN---QPDLLLFVGEALVGNEAVDQLVK 558 (630)
Q Consensus 482 l~~~~~~~d~~~ia~~ai~~a~~~~~D~vlIDTaGr~~~~~~L~~aL~kl~~~~---~Pd~VLlV~E~~~g~Dav~ql~~ 558 (630)
. .+ ...+.+.+...++|+|+|||+|+++.+...+.+|.++.... .|..+++|++++.+.+...++..
T Consensus 285 ~------~~----~~~l~~~l~~~~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~~~~~~ 354 (432)
T PRK12724 285 V------KD----IKKFKETLARDGSELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHTLTVLK 354 (432)
T ss_pred h------HH----HHHHHHHHHhCCCCEEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHHHHHHHH
Confidence 0 01 12233333446899999999999999999999999888765 36688999999999865554433
Q ss_pred HHHHHhhcccCCCCCCeeEEEEcccCCcCccHHHHHHHHHHhCCcEEEEecCCCCc-cCCCCCHHHHHHHhh
Q psy11993 559 FNNAMADHSLSDNPHLIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGTGQTYT-DLKSLNAKAVVNALM 629 (630)
Q Consensus 559 f~~~l~~~~~~~~~~~i~gIIlTK~D~~~~~~G~~ls~~~~~g~PI~fvg~Gq~v~-DL~~~~~~~~v~~Ll 629 (630)
+.+ ..+++++|+||+|++ .++|.++++++.+++||+|+|+||+|| ||..++++.+++.++
T Consensus 355 ~f~----------~~~~~glIlTKLDEt-~~~G~il~i~~~~~lPI~ylt~GQ~VPeDi~~A~~~~l~~~i~ 415 (432)
T PRK12724 355 AYE----------SLNYRRILLTKLDEA-DFLGSFLELADTYSKSFTYLSVGQEVPFDILNATKNLMAECVV 415 (432)
T ss_pred Hhc----------CCCCCEEEEEcccCC-CCccHHHHHHHHHCCCEEEEecCCCCCCCHHHhhHHHHHHHhc
Confidence 222 348999999999998 899999999999999999999999999 999999999999875
No 16
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=100.00 E-value=6.3e-35 Score=333.34 Aligned_cols=253 Identities=25% Similarity=0.359 Sum_probs=202.5
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCccCCccchHHHHHHHHHHHHHHHcCCCcchhhhhhhhhhhccCCC
Q psy11993 332 KPILEKMKDHLIAKNVAADIAVKLCDSVALKLEGKVLGTFESVANTVKSTLTDALVQILSPKRRVDILRDALEAKKQGRP 411 (630)
Q Consensus 332 ~~~l~~l~~~Li~~~V~~~ia~~l~~~v~~~l~g~~~~~~~~~~~~v~~~l~~~L~~il~~~~~~~iL~~i~~~i~~g~p 411 (630)
+|....+++.|++.||.++++.+|++.+..... ...+...+.+.|.+.+. ++.++++.+..|
T Consensus 124 ~~~~~~l~~~Ll~~dv~~~la~~l~~~l~~~~~----------~~~~~~~l~~~L~~~l~------il~~~~~~~~~g-- 185 (767)
T PRK14723 124 DPLRASLFRWLLGAGFSGQLARALLERLPVGYD----------RPAAMAWIRNELATHLP------VLRDEDALLAQG-- 185 (767)
T ss_pred hHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHHHHhh------hccCCCcccCCC--
Confidence 567788999999999999999999999865321 12345566666666543 233344444445
Q ss_pred eEEEEEccCCCChHHHHHHHHHHHHh-cC-CeEEEeecccCCccHHHHHHHHHhhhcccCCCcCCcchhhhHhhhccCCC
Q psy11993 412 FVMAFCGVNGVGKSTNLAKICFWLIE-NN-LNVLIAACDTFRAGAVEQLRTHVRHLCSLHPAAKHGGREMVQLFEKGYGK 489 (630)
Q Consensus 412 ~vi~lvGpNGvGKTTllakLA~~l~~-~g-gkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~~~~~tv~env~l~~~~~~~ 489 (630)
++++||||||||||||++|||+++.. .+ .+|.++++|+||+++.+||+.|+.+++.. ++. ..
T Consensus 186 ~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvp-------------v~~---~~ 249 (767)
T PRK14723 186 GVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVP-------------VHA---VK 249 (767)
T ss_pred eEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCC-------------ccc---cC
Confidence 89999999999999999999998854 44 49999999999999999999999999842 211 12
Q ss_pred CHHHHHHHHHHHhhhcCCCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCccHHHH-HHHHHHHHhhccc
Q psy11993 490 DPAEIAFRAISHARDMHIDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQ-LVKFNNAMADHSL 568 (630)
Q Consensus 490 d~~~ia~~ai~~a~~~~~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~Dav~q-l~~f~~~l~~~~~ 568 (630)
++.+ ..+++..+ .++|+|||||+|+++.+..++.++.++.....|+.+++|++++++.+.+.. +..|+...
T Consensus 250 ~~~~-l~~al~~~--~~~D~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~~i~~~f~~~~----- 321 (767)
T PRK14723 250 DAAD-LRFALAAL--GDKHLVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLNEVVHAYRHGA----- 321 (767)
T ss_pred CHHH-HHHHHHHh--cCCCEEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHHHHHHHHHHHhhcc-----
Confidence 4544 35566543 468999999999999999999999998888899999999999987655442 24443221
Q ss_pred CCCCCCeeEEEEcccCCcCccHHHHHHHHHHhCCcEEEEecCCCCc-cCCCCCHHHHHHHhhC
Q psy11993 569 SDNPHLIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGTGQTYT-DLKSLNAKAVVNALMK 630 (630)
Q Consensus 569 ~~~~~~i~gIIlTK~D~~~~~~G~~ls~~~~~g~PI~fvg~Gq~v~-DL~~~~~~~~v~~Ll~ 630 (630)
..+++++|+||+|++ .++|.++++++.+++||.|+|+||+|| ||+.|+++.|++.||+
T Consensus 322 ---~~~i~glIlTKLDEt-~~~G~iL~i~~~~~lPI~yit~GQ~VPdDL~~a~~~~lv~~ll~ 380 (767)
T PRK14723 322 ---GEDVDGCIITKLDEA-THLGPALDTVIRHRLPVHYVSTGQKVPEHLELAQADELVDRAFA 380 (767)
T ss_pred ---cCCCCEEEEeccCCC-CCccHHHHHHHHHCCCeEEEecCCCChhhcccCCHHHHHHHHhc
Confidence 236899999999998 899999999999999999999999998 9999999999999874
No 17
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=100.00 E-value=6.2e-34 Score=302.14 Aligned_cols=252 Identities=22% Similarity=0.315 Sum_probs=199.1
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhcCCccCCccchHHHHHHHHHHHHHHHcCCCcchhhhhhhhhhhccCCCeEEEE
Q psy11993 337 KMKDHLIAKNVAADIAVKLCDSVALKLEGKVLGTFESVANTVKSTLTDALVQILSPKRRVDILRDALEAKKQGRPFVMAF 416 (630)
Q Consensus 337 ~l~~~Li~~~V~~~ia~~l~~~v~~~l~g~~~~~~~~~~~~v~~~l~~~L~~il~~~~~~~iL~~i~~~i~~g~p~vi~l 416 (630)
++++.|.+.||.++++.+|.+.+...+......++ ..+...+.+.|.+.+.... ++.+.++ ++++|
T Consensus 146 ~~~~~L~~~gV~~~~~~~l~~~~~~~~~~~~~~~~----~~v~~~~~~~L~~~l~~~~--------~~~~~~~--~ii~l 211 (407)
T PRK12726 146 DFVKFLKGRGISDTYVADFMQAGRKQFKQVETAHL----DDITDWFVPYLSGKLAVED--------SFDLSNH--RIISL 211 (407)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhccccccccH----HHHHHHHHHHhcCcEeeCC--------CceecCC--eEEEE
Confidence 77999999999999999999999877544322232 3344555555555543221 1223344 89999
Q ss_pred EccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccCCCcCCcchhhhHhhhccCCCCHHHHHH
Q psy11993 417 CGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHPAAKHGGREMVQLFEKGYGKDPAEIAF 496 (630)
Q Consensus 417 vGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~~~~~tv~env~l~~~~~~~d~~~ia~ 496 (630)
+||+||||||++++||.++...+.+|.++++|+||++|++||+.|+..++.+ ++. ..++.+. .
T Consensus 212 vGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~gAveQLk~yae~lgvp-------------v~~---~~dp~dL-~ 274 (407)
T PRK12726 212 IGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVE-------------LIV---ATSPAEL-E 274 (407)
T ss_pred ECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCccHHHHHHHHhhcCCCC-------------EEe---cCCHHHH-H
Confidence 9999999999999999999888899999999999999999999999988742 221 1345554 4
Q ss_pred HHHHHhh-hcCCCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCccHHHHHHHHHHHHhhcccCCCCCCe
Q psy11993 497 RAISHAR-DMHIDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLI 575 (630)
Q Consensus 497 ~ai~~a~-~~~~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i 575 (630)
+++..+. ..++|+|+|||+|+.+.+..++.+|.++.....|+.+++|.++.... .++.. .+..| ...++
T Consensus 275 ~al~~l~~~~~~D~VLIDTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag~~~--~d~~~----i~~~f----~~l~i 344 (407)
T PRK12726 275 EAVQYMTYVNCVDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSGMKS--ADVMT----ILPKL----AEIPI 344 (407)
T ss_pred HHHHHHHhcCCCCEEEEECCCCCccCHHHHHHHHHHhhccCCceEEEECCCcccH--HHHHH----HHHhc----CcCCC
Confidence 5666554 35789999999999999999999999999888999988898875442 22211 12222 34589
Q ss_pred eEEEEcccCCcCccHHHHHHHHHHhCCcEEEEecCCCCc-cCCCCCHHHHHHHhhC
Q psy11993 576 DGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGTGQTYT-DLKSLNAKAVVNALMK 630 (630)
Q Consensus 576 ~gIIlTK~D~~~~~~G~~ls~~~~~g~PI~fvg~Gq~v~-DL~~~~~~~~v~~Ll~ 630 (630)
+++|+||+|++ .++|+++|+++.+|+||+|+|+||+|| ||..++++.+++.|++
T Consensus 345 ~glI~TKLDET-~~~G~~Lsv~~~tglPIsylt~GQ~VpdDi~~a~~~~Lv~~ll~ 399 (407)
T PRK12726 345 DGFIITKMDET-TRIGDLYTVMQETNLPVLYMTDGQNITENIFRPKSRWLAERFVG 399 (407)
T ss_pred CEEEEEcccCC-CCccHHHHHHHHHCCCEEEEecCCCCCcccCCCCHHHHHHHHhc
Confidence 99999999998 899999999999999999999999999 7999999999999874
No 18
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=100.00 E-value=7.3e-34 Score=306.42 Aligned_cols=256 Identities=18% Similarity=0.267 Sum_probs=197.0
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCccCCccchHHHHHHHHHHHHHHHcCCCcchhhhhhhhhhhccCCC
Q psy11993 332 KPILEKMKDHLIAKNVAADIAVKLCDSVALKLEGKVLGTFESVANTVKSTLTDALVQILSPKRRVDILRDALEAKKQGRP 411 (630)
Q Consensus 332 ~~~l~~l~~~Li~~~V~~~ia~~l~~~v~~~l~g~~~~~~~~~~~~v~~~l~~~L~~il~~~~~~~iL~~i~~~i~~g~p 411 (630)
.|.++.+++.|++.||+++++++|++.+...+.......+ ..++..+.+.|.+.+...... ....+|
T Consensus 108 ~~~~~~l~~~L~~~dv~~~~~~~i~~~~~~~~~~~~~~~~----~~v~~~l~~~l~~~i~~~~~~---------~~~~~~ 174 (388)
T PRK12723 108 HPTILKIEDILRENDFSESYIKDINEFIKKEFSLSDLDDY----DKVRDSVIIYIAKTIKCSGSI---------IDNLKK 174 (388)
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHhhhhhcCCH----HHHHHHHHHHHHHHhhccCcc---------ccCCCC
Confidence 4678999999999999999999999999887644322222 334445555555544321111 112346
Q ss_pred eEEEEEccCCCChHHHHHHHHHHHHh----cCCeEEEeecccCCccHHHHHHHHHhhhcccCCCcCCcchhhhHhhhccC
Q psy11993 412 FVMAFCGVNGVGKSTNLAKICFWLIE----NNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHPAAKHGGREMVQLFEKGY 487 (630)
Q Consensus 412 ~vi~lvGpNGvGKTTllakLA~~l~~----~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~~~~~tv~env~l~~~~~ 487 (630)
.+++|+||||||||||+++||.++.. .+.+|.++++|+||.++.+||+.|+..++.+.. .
T Consensus 175 ~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~-------------~--- 238 (388)
T PRK12723 175 RVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVK-------------A--- 238 (388)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceE-------------e---
Confidence 89999999999999999999988864 467999999999999999999999999885211 0
Q ss_pred CCCHHHHHHHHHHHhhhcCCCeeeeccccchhchHHHHHHHHhhhhhcC-CCeEEEEeccccCccHHHHHHHHHHHHhhc
Q psy11993 488 GKDPAEIAFRAISHARDMHIDVVLIDTAGRMQDNEPLMRALAKLVKVNQ-PDLLLFVGEALVGNEAVDQLVKFNNAMADH 566 (630)
Q Consensus 488 ~~d~~~ia~~ai~~a~~~~~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~-Pd~VLlV~E~~~g~Dav~ql~~f~~~l~~~ 566 (630)
..++.. ...++.. ..++|+|+|||+|+++.+...+..|.+++.... |..+++|++++++.+.+. ..|+ .|
T Consensus 239 ~~~~~~-l~~~L~~--~~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~~~~--~~~~----~~ 309 (388)
T PRK12723 239 IESFKD-LKEEITQ--SKDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTSDVK--EIFH----QF 309 (388)
T ss_pred eCcHHH-HHHHHHH--hCCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHH--HHHH----Hh
Confidence 112222 2333333 357999999999999988877788888877665 447999999999865444 2232 23
Q ss_pred ccCCCCCCeeEEEEcccCCcCccHHHHHHHHHHhCCcEEEEecCCCCc-cCCCCCHHHHHHHhhC
Q psy11993 567 SLSDNPHLIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGTGQTYT-DLKSLNAKAVVNALMK 630 (630)
Q Consensus 567 ~~~~~~~~i~gIIlTK~D~~~~~~G~~ls~~~~~g~PI~fvg~Gq~v~-DL~~~~~~~~v~~Ll~ 630 (630)
+ ..+++++|+||+|++ .++|.++++++.+++||+|+|+||+|| ||+.|++..+++.|++
T Consensus 310 ~----~~~~~~~I~TKlDet-~~~G~~l~~~~~~~~Pi~yit~Gq~vPeDl~~~~~~~~~~~l~g 369 (388)
T PRK12723 310 S----PFSYKTVIFTKLDET-TCVGNLISLIYEMRKEVSYVTDGQIVPHNISIAEPLTFIKKING 369 (388)
T ss_pred c----CCCCCEEEEEeccCC-CcchHHHHHHHHHCCCEEEEeCCCCChhhhhhCCHHHHHHHhcC
Confidence 2 357999999999998 899999999999999999999999998 9999999999999874
No 19
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=100.00 E-value=9.3e-34 Score=311.74 Aligned_cols=252 Identities=25% Similarity=0.336 Sum_probs=192.9
Q ss_pred hHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCccCCccchHHHHHHHHHHHHHHHcCCCcchhhhhhhhhhhccCC
Q psy11993 331 MKPILEKMKDHLIAKNVAADIAVKLCDSVALKLEGKVLGTFESVANTVKSTLTDALVQILSPKRRVDILRDALEAKKQGR 410 (630)
Q Consensus 331 l~~~l~~l~~~Li~~~V~~~ia~~l~~~v~~~l~g~~~~~~~~~~~~v~~~l~~~L~~il~~~~~~~iL~~i~~~i~~g~ 410 (630)
..|....+++.|++.||+.+++++|++.+...... ......++..+.+.+ . ++.+.++.+..|
T Consensus 194 ~~p~~~~l~~~Ll~~dv~~~la~~l~~~l~~~~~~------~~~~~~l~~~l~~~l----~------~~~~~~~~~~~g- 256 (484)
T PRK06995 194 RDPVRAALLKHLLAAGFSAQLVRMLVDNLPEGDDA------EAALDWVQSALAKNL----P------VLDSEDALLDRG- 256 (484)
T ss_pred ccHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhhch------hHHHHHHHHHHHHHH----h------hccCccccccCC-
Confidence 36788999999999999999999999999876421 123444444443333 2 122233334455
Q ss_pred CeEEEEEccCCCChHHHHHHHHHHHHhc-C-CeEEEeecccCCccHHHHHHHHHhhhcccCCCcCCcchhhhHhhhccCC
Q psy11993 411 PFVMAFCGVNGVGKSTNLAKICFWLIEN-N-LNVLIAACDTFRAGAVEQLRTHVRHLCSLHPAAKHGGREMVQLFEKGYG 488 (630)
Q Consensus 411 p~vi~lvGpNGvGKTTllakLA~~l~~~-g-gkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~~~~~tv~env~l~~~~~~ 488 (630)
++++||||||||||||++|||+++... + .+|.++++|+||.++++||+.|+.+++... ...
T Consensus 257 -~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVpv-------------~~~--- 319 (484)
T PRK06995 257 -GVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPV-------------HAV--- 319 (484)
T ss_pred -cEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHhCCCe-------------ecc---
Confidence 899999999999999999999988654 4 389999999999999999999999887421 111
Q ss_pred CCHHHHHHHHHHHhhhcCCCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCccHHHHHHHHHHHHhhccc
Q psy11993 489 KDPAEIAFRAISHARDMHIDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQLVKFNNAMADHSL 568 (630)
Q Consensus 489 ~d~~~ia~~ai~~a~~~~~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~Dav~ql~~f~~~l~~~~~ 568 (630)
.+..+. ........++|+++|||+|+.+.+..++.++..+.....|...++|++++.+.+.+.+...+ |
T Consensus 320 ~~~~Dl---~~aL~~L~d~d~VLIDTaGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~~~~l~~i~~~------f-- 388 (484)
T PRK06995 320 KDAADL---RLALSELRNKHIVLIDTIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSHGDTLNEVVQA------Y-- 388 (484)
T ss_pred CCchhH---HHHHHhccCCCeEEeCCCCcChhhHHHHHHHHHHhccCCCCeeEEEEeCCCcHHHHHHHHHH------h--
Confidence 111111 12234556789999999999998877777766555555587888999998887666544332 2
Q ss_pred CCCCCCeeEEEEcccCCcCccHHHHHHHHHHhCCcEEEEecCCCCc-cCCCCCHHHHHHHhhC
Q psy11993 569 SDNPHLIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGTGQTYT-DLKSLNAKAVVNALMK 630 (630)
Q Consensus 569 ~~~~~~i~gIIlTK~D~~~~~~G~~ls~~~~~g~PI~fvg~Gq~v~-DL~~~~~~~~v~~Ll~ 630 (630)
...+++++|+||+|++ .++|.++++++.+++||.|+|+||+|| ||+.|+++.|++.+|+
T Consensus 389 --~~~~~~g~IlTKlDet-~~~G~~l~i~~~~~lPI~yvt~GQ~VPeDL~~a~~~~lv~~ll~ 448 (484)
T PRK06995 389 --RGPGLAGCILTKLDEA-ASLGGALDVVIRYKLPLHYVSNGQRVPEDLHLANKKFLLHRAFC 448 (484)
T ss_pred --ccCCCCEEEEeCCCCc-ccchHHHHHHHHHCCCeEEEecCCCChhhhccCCHHHHHHHHhc
Confidence 1247999999999998 899999999999999999999999997 9999999999999885
No 20
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=100.00 E-value=3.9e-33 Score=287.78 Aligned_cols=259 Identities=22% Similarity=0.382 Sum_probs=202.1
Q ss_pred CccchHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCccCCccchHHHHHHHHHHHHHHHcCCCcchhhhhhhhhhh
Q psy11993 327 TKSDMKPILEKMKDHLIAKNVAADIAVKLCDSVALKLEGKVLGTFESVANTVKSTLTDALVQILSPKRRVDILRDALEAK 406 (630)
Q Consensus 327 ~~~~l~~~l~~l~~~Li~~~V~~~ia~~l~~~v~~~l~g~~~~~~~~~~~~v~~~l~~~L~~il~~~~~~~iL~~i~~~i 406 (630)
..++.++.+++++..|++++|..+++.++.+...-.+... .+ ....+...+.+.+...+.+.. ++
T Consensus 7 ~~~~~~~~~~~~~~~l~~~dv~~~~~~~l~~~~~i~f~~~---~~--~~~~vl~~v~~~l~~~~~~~~---~~------- 71 (270)
T PRK06731 7 KQESVPFIIQKVIRMLEQNDVEQYFIHAYAEKLKVKFENA---TM--ITEEVIEYILEDMSSHFNTEN---VF------- 71 (270)
T ss_pred hhhcccHHHHHHHHHHHHcCCCHHHHHHHhhcceEEecCC---Cc--cccHHHHHHhcccEEeeCCcc---cc-------
Confidence 3567888899999999999999999999998664333221 11 111222222233332222110 11
Q ss_pred ccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccCCCcCCcchhhhHhhhcc
Q psy11993 407 KQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHPAAKHGGREMVQLFEKG 486 (630)
Q Consensus 407 ~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~~~~~tv~env~l~~~~ 486 (630)
.+++.+++|+|+||+||||++.+|++.+...+.+|.++++|.+|.++++|++.++..++.. ++.
T Consensus 72 -~~~~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~-------------~~~-- 135 (270)
T PRK06731 72 -EKEVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFE-------------VIA-- 135 (270)
T ss_pred -cCCCCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCce-------------EEe--
Confidence 1133799999999999999999999998888889999999999999999999998877632 111
Q ss_pred CCCCHHHHHHHHHHHhhh-cCCCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEecccc-CccHHHHHHHHHHHHh
Q psy11993 487 YGKDPAEIAFRAISHARD-MHIDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALV-GNEAVDQLVKFNNAMA 564 (630)
Q Consensus 487 ~~~d~~~ia~~ai~~a~~-~~~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~-g~Dav~ql~~f~~~l~ 564 (630)
..++..+ .+++..+.. .++|+|+|||+|+++.+..++++|.++.....|+.+++|+++++ ++|..++++.|+.
T Consensus 136 -~~~~~~l-~~~l~~l~~~~~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~~d~~~~~~~f~~--- 210 (270)
T PRK06731 136 -VRDEAAM-TRALTYFKEEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMIEIITNFKD--- 210 (270)
T ss_pred -cCCHHHH-HHHHHHHHhcCCCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCHHHHHHHHHHhCC---
Confidence 1234443 345555443 46999999999999999999999999999999999999999875 5677787777753
Q ss_pred hcccCCCCCCeeEEEEcccCCcCccHHHHHHHHHHhCCcEEEEecCCCCc-cCCCCCHHHHHHHhhC
Q psy11993 565 DHSLSDNPHLIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGTGQTYT-DLKSLNAKAVVNALMK 630 (630)
Q Consensus 565 ~~~~~~~~~~i~gIIlTK~D~~~~~~G~~ls~~~~~g~PI~fvg~Gq~v~-DL~~~~~~~~v~~Ll~ 630 (630)
.+++++|+||+|++ .++|.++++++.+++||+|+|+||+|| ||+.++++++++.||+
T Consensus 211 --------~~~~~~I~TKlDet-~~~G~~l~~~~~~~~Pi~~it~Gq~vp~di~~a~~~~l~~~~~~ 268 (270)
T PRK06731 211 --------IHIDGIVFTKFDET-ASSGELLKIPAVSSAPIVLMTDGQDVKKNIHIATAEHLAKQMLQ 268 (270)
T ss_pred --------CCCCEEEEEeecCC-CCccHHHHHHHHHCcCEEEEeCCCCCCcchhhCCHHHHHHHHhc
Confidence 37999999999998 799999999999999999999999999 9999999999999875
No 21
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=100.00 E-value=3e-32 Score=291.91 Aligned_cols=263 Identities=22% Similarity=0.291 Sum_probs=196.8
Q ss_pred hHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCccCCccchHHHHHHHHHHHHHHHcCCCcchhhhhhhhhhhccCC
Q psy11993 331 MKPILEKMKDHLIAKNVAADIAVKLCDSVALKLEGKVLGTFESVANTVKSTLTDALVQILSPKRRVDILRDALEAKKQGR 410 (630)
Q Consensus 331 l~~~l~~l~~~Li~~~V~~~ia~~l~~~v~~~l~g~~~~~~~~~~~~v~~~l~~~L~~il~~~~~~~iL~~i~~~i~~g~ 410 (630)
-.|.-..+.++|++.||.+.++++|++.+...... .+.+....++...+... ..+++..++.+..|
T Consensus 72 ~~p~~~~l~~~L~~~g~~~~l~~~l~~~~~~~~~~---~~~~~~~~~~~~~l~~~----------l~~~~~~~~~~~~g- 137 (374)
T PRK14722 72 RNPVHGALTKYLFAAGFSAQLVRMIVDNLPEGEGY---DTLDAAADWAQSVLAAN----------LPVLDSEDALMERG- 137 (374)
T ss_pred cCcHHHHHHHHHHHCCCCHHHHHHHHHhhhhhccc---CCHHHHHHHHHHHHHhc----------chhhcCCCccccCC-
Confidence 34667899999999999999999999988653210 11112223332222222 22333344445566
Q ss_pred CeEEEEEccCCCChHHHHHHHHHHHHh-cC-CeEEEeecccCCccHHHHHHHHHhhhcccCCCcCCcchhhhHhhhccCC
Q psy11993 411 PFVMAFCGVNGVGKSTNLAKICFWLIE-NN-LNVLIAACDTFRAGAVEQLRTHVRHLCSLHPAAKHGGREMVQLFEKGYG 488 (630)
Q Consensus 411 p~vi~lvGpNGvGKTTllakLA~~l~~-~g-gkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~~~~~tv~env~l~~~~~~ 488 (630)
.+++|+||||||||||+++||..+.. .+ .+|.++++|+||.++++||+.|+.+++.. +......
T Consensus 138 -~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~-------------~~~~~~~ 203 (374)
T PRK14722 138 -GVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVP-------------VHAVKDG 203 (374)
T ss_pred -cEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCc-------------eEecCCc
Confidence 89999999999999999999987654 34 58999999999999999999999999842 2211111
Q ss_pred CCHHHHHHHHHHHhhhcCCCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCccHHHHH-HHHHHHHhhcc
Q psy11993 489 KDPAEIAFRAISHARDMHIDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQL-VKFNNAMADHS 567 (630)
Q Consensus 489 ~d~~~ia~~ai~~a~~~~~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~Dav~ql-~~f~~~l~~~~ 567 (630)
.+. ..++. ...++|+|+|||+|+.+.+..++.++..+.....|..+++|++++++.+.+.+. ..|......-.
T Consensus 204 ~~l----~~~l~--~l~~~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~~f~~~~~~p~ 277 (374)
T PRK14722 204 GDL----QLALA--ELRNKHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAYRSAAGQPK 277 (374)
T ss_pred ccH----HHHHH--HhcCCCEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHHHHHHhhcccc
Confidence 222 12222 345689999999999999999999998887777788899999999998877654 56654421000
Q ss_pred cCCCCCCeeEEEEcccCCcCccHHHHHHHHHHhCCcEEEEecCCCCc-cCCCCCHHHHHHHhhC
Q psy11993 568 LSDNPHLIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGTGQTYT-DLKSLNAKAVVNALMK 630 (630)
Q Consensus 568 ~~~~~~~i~gIIlTK~D~~~~~~G~~ls~~~~~g~PI~fvg~Gq~v~-DL~~~~~~~~v~~Ll~ 630 (630)
....+++++|+||+||+ .++|.++++++.+++||.|+++||+|| ||+.++++.+|+.+|+
T Consensus 278 --~~~~~~~~~I~TKlDEt-~~~G~~l~~~~~~~lPi~yvt~Gq~VPedl~~a~~~~l~~~~~~ 338 (374)
T PRK14722 278 --AALPDLAGCILTKLDEA-SNLGGVLDTVIRYKLPVHYVSTGQKVPENLYVATKKFLLKSAFC 338 (374)
T ss_pred --cccCCCCEEEEeccccC-CCccHHHHHHHHHCcCeEEEecCCCCCcccccCCHHHHHHHHhc
Confidence 00125899999999998 899999999999999999999999999 8999999999998873
No 22
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=100.00 E-value=1.3e-32 Score=292.52 Aligned_cols=189 Identities=32% Similarity=0.453 Sum_probs=159.2
Q ss_pred eEEEEEccCCCChHHHHHHHHHHHH--hcCCeEEEeecccCCccHHHHHHHHHhhhcccCCCcCCcchhhhHhhhccCCC
Q psy11993 412 FVMAFCGVNGVGKSTNLAKICFWLI--ENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHPAAKHGGREMVQLFEKGYGK 489 (630)
Q Consensus 412 ~vi~lvGpNGvGKTTllakLA~~l~--~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~~~~~tv~env~l~~~~~~~ 489 (630)
.+++||||+|||||||++|||+.+. ....+|.|++.|+||+||+|||+.|+.+++.+.. + ..
T Consensus 204 ~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~-----------v-----v~ 267 (407)
T COG1419 204 RVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLE-----------V-----VY 267 (407)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceE-----------E-----ec
Confidence 7999999999999999999998776 5568999999999999999999999999985321 1 12
Q ss_pred CHHHHHHHHHHHhhhcCCCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCccHHHHHHHHHHHHhhcccC
Q psy11993 490 DPAEIAFRAISHARDMHIDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQLVKFNNAMADHSLS 569 (630)
Q Consensus 490 d~~~ia~~ai~~a~~~~~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~Dav~ql~~f~~~l~~~~~~ 569 (630)
++.+.. .++.. ..++|+|||||+|+.+.+...+.+|..++...++..+.||..+++....+ .+.+..|
T Consensus 268 ~~~el~-~ai~~--l~~~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K~~dl------kei~~~f--- 335 (407)
T COG1419 268 SPKELA-EAIEA--LRDCDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTKYEDL------KEIIKQF--- 335 (407)
T ss_pred CHHHHH-HHHHH--hhcCCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcchHHH------HHHHHHh---
Confidence 343332 34433 34679999999999999999999999999999888999999998765432 2233333
Q ss_pred CCCCCeeEEEEcccCCcCccHHHHHHHHHHhCCcEEEEecCCCCc-cCCCCCHHHHHHHhhC
Q psy11993 570 DNPHLIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGTGQTYT-DLKSLNAKAVVNALMK 630 (630)
Q Consensus 570 ~~~~~i~gIIlTK~D~~~~~~G~~ls~~~~~g~PI~fvg~Gq~v~-DL~~~~~~~~v~~Ll~ 630 (630)
+..+++++|+||+||+ ..+|.++|+++.+++||+|+++||+|| ||..++++++|+.+++
T Consensus 336 -~~~~i~~~I~TKlDET-~s~G~~~s~~~e~~~PV~YvT~GQ~VPeDI~va~~~~Lv~~~~g 395 (407)
T COG1419 336 -SLFPIDGLIFTKLDET-TSLGNLFSLMYETRLPVSYVTNGQRVPEDIVVANPDYLVRRILG 395 (407)
T ss_pred -ccCCcceeEEEccccc-CchhHHHHHHHHhCCCeEEEeCCCCCCchhhhcChHHHHHHHhc
Confidence 3568999999999998 899999999999999999999999999 8999999999998763
No 23
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=100.00 E-value=5.6e-32 Score=296.15 Aligned_cols=256 Identities=29% Similarity=0.400 Sum_probs=201.4
Q ss_pred CccchHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCccCCccchHHHHHHHHHHHHHHHcCCCcchhhhhhhhhhh
Q psy11993 327 TKSDMKPILEKMKDHLIAKNVAADIAVKLCDSVALKLEGKVLGTFESVANTVKSTLTDALVQILSPKRRVDILRDALEAK 406 (630)
Q Consensus 327 ~~~~l~~~l~~l~~~Li~~~V~~~ia~~l~~~v~~~l~g~~~~~~~~~~~~v~~~l~~~L~~il~~~~~~~iL~~i~~~i 406 (630)
....++|.+..+++.|++.||+++++.+|++.+......... .+...+.+.|.+.+.... .+ + +
T Consensus 155 ~~~~~~~~~~~~~~~L~~~gv~~~~~~~l~~~~~~~~~~~~~--------~~~~~~~~~L~~~l~~~~-~~------~-~ 218 (424)
T PRK05703 155 QVERIPPEFAELYKRLKRSGLSPEIAEKLLKLLLEHMPPRER--------TAWRYLLELLANMIPVRV-ED------I-L 218 (424)
T ss_pred ccccchHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHhhhhHH--------HHHHHHHHHHHHHhCccc-cc------c-c
Confidence 456788999999999999999999999999999877543210 345667777777775322 11 1 2
Q ss_pred ccCCCeEEEEEccCCCChHHHHHHHHHHHH--hcCCeEEEeecccCCccHHHHHHHHHhhhcccCCCcCCcchhhhHhhh
Q psy11993 407 KQGRPFVMAFCGVNGVGKSTNLAKICFWLI--ENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHPAAKHGGREMVQLFE 484 (630)
Q Consensus 407 ~~g~p~vi~lvGpNGvGKTTllakLA~~l~--~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~~~~~tv~env~l~~ 484 (630)
..| ++++|+||+||||||++++||.++. ..+.+|.++++|+||.++.+||+.|++.++.+. ..
T Consensus 219 ~~~--~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~-------------~~ 283 (424)
T PRK05703 219 KQG--GVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPV-------------EV 283 (424)
T ss_pred cCC--cEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCce-------------Ec
Confidence 345 7999999999999999999999886 346799999999999999999999999887422 11
Q ss_pred ccCCCCHHHHHHHHHHHhhhcCCCeeeeccccchhchHHHHHHHHhhhh-hcCCCeEEEEeccccCccHHHHHHHHHHHH
Q psy11993 485 KGYGKDPAEIAFRAISHARDMHIDVVLIDTAGRMQDNEPLMRALAKLVK-VNQPDLLLFVGEALVGNEAVDQLVKFNNAM 563 (630)
Q Consensus 485 ~~~~~d~~~ia~~ai~~a~~~~~D~vlIDTaGr~~~~~~L~~aL~kl~~-~~~Pd~VLlV~E~~~g~Dav~ql~~f~~~l 563 (630)
. .++.+. ..++.. ..++|+|+|||+|+.+.+...+..|..++. ...|..+++|+.++.+...+.++ +
T Consensus 284 ~---~~~~~l-~~~l~~--~~~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~~~l~~~------~ 351 (424)
T PRK05703 284 V---YDPKEL-AKALEQ--LRDCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKYEDLKDI------Y 351 (424)
T ss_pred c---CCHHhH-HHHHHH--hCCCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCHHHHHHH------H
Confidence 0 122222 223332 346899999999999999999999988887 44677888899998886554443 2
Q ss_pred hhcccCCCCCCeeEEEEcccCCcCccHHHHHHHHHHhCCcEEEEecCCCCc-cCCCCCHHHHHHHhhC
Q psy11993 564 ADHSLSDNPHLIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGTGQTYT-DLKSLNAKAVVNALMK 630 (630)
Q Consensus 564 ~~~~~~~~~~~i~gIIlTK~D~~~~~~G~~ls~~~~~g~PI~fvg~Gq~v~-DL~~~~~~~~v~~Ll~ 630 (630)
..|. ..+++++|+||+|++ ..+|.++++++.+|+||+|+++||+|| ||+.|+++.+++.||+
T Consensus 352 ~~f~----~~~~~~vI~TKlDet-~~~G~i~~~~~~~~lPv~yit~Gq~VpdDl~~a~~~~l~~~ll~ 414 (424)
T PRK05703 352 KHFS----RLPLDGLIFTKLDET-SSLGSILSLLIESGLPISYLTNGQRVPDDIKVANPEELVRLLLG 414 (424)
T ss_pred HHhC----CCCCCEEEEeccccc-ccccHHHHHHHHHCCCEEEEeCCCCChhhhhhCCHHHHHHHHhc
Confidence 2222 346889999999997 899999999999999999999999998 9999999999999884
No 24
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=100.00 E-value=1.1e-31 Score=291.32 Aligned_cols=252 Identities=25% Similarity=0.276 Sum_probs=196.1
Q ss_pred chHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCccCCccchHHHHHHHHHHHHHHHcCCCcchhhhhhhhhhhccC
Q psy11993 330 DMKPILEKMKDHLIAKNVAADIAVKLCDSVALKLEGKVLGTFESVANTVKSTLTDALVQILSPKRRVDILRDALEAKKQG 409 (630)
Q Consensus 330 ~l~~~l~~l~~~Li~~~V~~~ia~~l~~~v~~~l~g~~~~~~~~~~~~v~~~l~~~L~~il~~~~~~~iL~~i~~~i~~g 409 (630)
...|....+.+.|++.||+++++.+|++.+...... ......++..+.+.|..+-.+ + .+..|
T Consensus 129 ~~~p~~~~~~~~L~~~~v~~~la~~l~~~~~~~~~~------~~~~~~~~~~l~~~l~~~~~~----~-------~~~~g 191 (420)
T PRK14721 129 QRDPGGMKVLRTLLSAGFSPLLSRHLLEKLPADRDF------EQSLKKTISLLTLNLRTIGGD----E-------IIEQG 191 (420)
T ss_pred ccCcHHHHHHHHHHHCCCCHHHHHHHHHHHHHHhhh------hhHHHHHHHHHHHHHHhcCCc----c-------ccCCC
Confidence 345666889999999999999999999998775421 123455666666665432111 1 12345
Q ss_pred CCeEEEEEccCCCChHHHHHHHHHHHHh-c-CCeEEEeecccCCccHHHHHHHHHhhhcccCCCcCCcchhhhHhhhccC
Q psy11993 410 RPFVMAFCGVNGVGKSTNLAKICFWLIE-N-NLNVLIAACDTFRAGAVEQLRTHVRHLCSLHPAAKHGGREMVQLFEKGY 487 (630)
Q Consensus 410 ~p~vi~lvGpNGvGKTTllakLA~~l~~-~-ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~~~~~tv~env~l~~~~~ 487 (630)
++++||||||||||||+++||+.+.. . ..+|.++.+|+||.++.+|++.++.+++... ..
T Consensus 192 --~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~-------------~~--- 253 (420)
T PRK14721 192 --GVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSV-------------RS--- 253 (420)
T ss_pred --cEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCce-------------ec---
Confidence 89999999999999999999986543 2 3589999999999999999999999987422 11
Q ss_pred CCCHHHHHHHHHHHhhhcCCCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCccHHHHHHHHHHHHhhcc
Q psy11993 488 GKDPAEIAFRAISHARDMHIDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQLVKFNNAMADHS 567 (630)
Q Consensus 488 ~~d~~~ia~~ai~~a~~~~~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~Dav~ql~~f~~~l~~~~ 567 (630)
..++.+.. .++ ....++|+++|||+|+.+++..++.+|..+.....|..+++|++++++.+.+.++.. .|
T Consensus 254 v~~~~dl~-~al--~~l~~~d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~~~~~~~~~------~f- 323 (420)
T PRK14721 254 IKDIADLQ-LML--HELRGKHMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSGDTLDEVIS------AY- 323 (420)
T ss_pred CCCHHHHH-HHH--HHhcCCCEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCCHHHHHHHHH------Hh-
Confidence 11232221 222 245678999999999999999999999988766678889999999987765554322 22
Q ss_pred cCCCCCCeeEEEEcccCCcCccHHHHHHHHHHhCCcEEEEecCCCCc-cCCCCCHHHHHHHhhC
Q psy11993 568 LSDNPHLIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGTGQTYT-DLKSLNAKAVVNALMK 630 (630)
Q Consensus 568 ~~~~~~~i~gIIlTK~D~~~~~~G~~ls~~~~~g~PI~fvg~Gq~v~-DL~~~~~~~~v~~Ll~ 630 (630)
...+++++|+||+|++ .++|.++++++.+++||.|+++||+|| ||+.++++.+|+.||+
T Consensus 324 ---~~~~~~~~I~TKlDEt-~~~G~~l~~~~~~~lPi~yvt~Gq~VP~Dl~~a~~~~lv~~ll~ 383 (420)
T PRK14721 324 ---QGHGIHGCIITKVDEA-ASLGIALDAVIRRKLVLHYVTNGQKVPEDLHEANSRYLLHRIFK 383 (420)
T ss_pred ---cCCCCCEEEEEeeeCC-CCccHHHHHHHHhCCCEEEEECCCCchhhhhhCCHHHHHHHHhc
Confidence 2358999999999998 899999999999999999999999998 9999999999999874
No 25
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=99.96 E-value=3.3e-28 Score=267.72 Aligned_cols=249 Identities=26% Similarity=0.291 Sum_probs=182.8
Q ss_pred cchHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCccCCccchHHHHHHHHHHHHHHHcCCCcchhhhhhhhhhhcc
Q psy11993 329 SDMKPILEKMKDHLIAKNVAADIAVKLCDSVALKLEGKVLGTFESVANTVKSTLTDALVQILSPKRRVDILRDALEAKKQ 408 (630)
Q Consensus 329 ~~l~~~l~~l~~~Li~~~V~~~ia~~l~~~v~~~l~g~~~~~~~~~~~~v~~~l~~~L~~il~~~~~~~iL~~i~~~i~~ 408 (630)
..-.|.-..+.++|++.||.++++++|++.+..... ....+..+.. .|.+.+. ....+. +..
T Consensus 288 ~~~~P~~~~l~~~L~~~Gvs~~la~~L~~~l~~~~~------~~~~~~~l~~----~L~~~l~-v~~~~~-------l~~ 349 (559)
T PRK12727 288 LRGSPVRAQALELMDDYGFDAGLTRDVAMQIPADTE------LHRGRGLMLG----LLSKRLP-VAPVDP-------LER 349 (559)
T ss_pred hccChHHHHHHHHHHHCCCCHHHHHHHHHhhhcccc------hhhHHHHHHH----HHHHhcC-cCcccc-------ccC
Confidence 444688888999999999999999999998865421 1222334433 4444332 111221 234
Q ss_pred CCCeEEEEEccCCCChHHHHHHHHHHHHhc--CCeEEEeecccCCccHHHHHHHHHhhhcccCCCcCCcchhhhHhhhcc
Q psy11993 409 GRPFVMAFCGVNGVGKSTNLAKICFWLIEN--NLNVLIAACDTFRAGAVEQLRTHVRHLCSLHPAAKHGGREMVQLFEKG 486 (630)
Q Consensus 409 g~p~vi~lvGpNGvGKTTllakLA~~l~~~--ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~~~~~tv~env~l~~~~ 486 (630)
| .+++|+||+|+||||++.+|+.++... +++|.++++|+||.++.+|++.|+..++.. +...
T Consensus 350 G--~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~-------------v~~a- 413 (559)
T PRK12727 350 G--GVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIA-------------VHEA- 413 (559)
T ss_pred C--CEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCce-------------eEec-
Confidence 5 899999999999999999999877654 468999999999999999999998877642 1110
Q ss_pred CCCCHHHHHHHHHHHhhhcCCCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCc-cHHHHHHHHHHHHhh
Q psy11993 487 YGKDPAEIAFRAISHARDMHIDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGN-EAVDQLVKFNNAMAD 565 (630)
Q Consensus 487 ~~~d~~~ia~~ai~~a~~~~~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~-Dav~ql~~f~~~l~~ 565 (630)
.+... ...++.. ..++|+|||||+|+++.+..++.+|..+..... ...++|..+..+. +..+.++.|..
T Consensus 414 --~d~~~-L~~aL~~--l~~~DLVLIDTaG~s~~D~~l~eeL~~L~aa~~-~a~lLVLpAtss~~Dl~eii~~f~~---- 483 (559)
T PRK12727 414 --DSAES-LLDLLER--LRDYKLVLIDTAGMGQRDRALAAQLNWLRAARQ-VTSLLVLPANAHFSDLDEVVRRFAH---- 483 (559)
T ss_pred --CcHHH-HHHHHHH--hccCCEEEecCCCcchhhHHHHHHHHHHHHhhc-CCcEEEEECCCChhHHHHHHHHHHh----
Confidence 12222 2234433 346899999999999988888887765544333 3555666665543 43333344432
Q ss_pred cccCCCCCCeeEEEEcccCCcCccHHHHHHHHHHhCCcEEEEecCCCCc-cCCCCCHHHHHHHhh
Q psy11993 566 HSLSDNPHLIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGTGQTYT-DLKSLNAKAVVNALM 629 (630)
Q Consensus 566 ~~~~~~~~~i~gIIlTK~D~~~~~~G~~ls~~~~~g~PI~fvg~Gq~v~-DL~~~~~~~~v~~Ll 629 (630)
..++|+|+||+|++ .++|.++++++.+++||.|+++||+|| ||+.+++..+|+.+.
T Consensus 484 -------~~~~gvILTKlDEt-~~lG~aLsv~~~~~LPI~yvt~GQ~VPeDL~~A~~~~Lv~r~~ 540 (559)
T PRK12727 484 -------AKPQGVVLTKLDET-GRFGSALSVVVDHQMPITWVTDGQRVPDDLHRANAASLVLRLE 540 (559)
T ss_pred -------hCCeEEEEecCcCc-cchhHHHHHHHHhCCCEEEEeCCCCchhhhhcCCHHHHHHHHH
Confidence 26899999999997 799999999999999999999999998 999999999999875
No 26
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=99.89 E-value=4.2e-22 Score=192.43 Aligned_cols=173 Identities=46% Similarity=0.728 Sum_probs=142.8
Q ss_pred eEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccCCCcCCcchhhhHhhhccCCCCH
Q psy11993 412 FVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHPAAKHGGREMVQLFEKGYGKDP 491 (630)
Q Consensus 412 ~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~~~~~tv~env~l~~~~~~~d~ 491 (630)
++++|+|++|+||||++.+++..+...+.+|.++++|++|++..+|++.++...+. .++......++
T Consensus 1 ~~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~~~~~~~~l~~~~~~~~~-------------~~~~~~~~~~~ 67 (173)
T cd03115 1 TVILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTYRPAAIEQLRVLGEQVGV-------------PVFEEGEGKDP 67 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCChHHHHHHHHhcccCCe-------------EEEecCCCCCH
Confidence 47899999999999999999999988888999999999999999999888776552 22222333456
Q ss_pred HHHHHHHHHHhhhcCCCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCccHHHHHHHHHHHHhhcccCCC
Q psy11993 492 AEIAFRAISHARDMHIDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQLVKFNNAMADHSLSDN 571 (630)
Q Consensus 492 ~~ia~~ai~~a~~~~~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~Dav~ql~~f~~~l~~~~~~~~ 571 (630)
.....+++..+...++|++++||+|..+.+...+..+..+.....|+.+++|.++.++.+..+++..|.+..
T Consensus 68 ~~~~~~~~~~~~~~~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~~~~~~~~~~~~~-------- 139 (173)
T cd03115 68 VSIAKRAIEHAREENFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQDAVNQAKAFNEAL-------- 139 (173)
T ss_pred HHHHHHHHHHHHhCCCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChHHHHHHHHHHhhC--------
Confidence 666666666666678999999999998878888888887777777999999999988887777666554333
Q ss_pred CCCeeEEEEcccCCcCccHHHHHHHHHHhCCcEEEEe
Q psy11993 572 PHLIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVG 608 (630)
Q Consensus 572 ~~~i~gIIlTK~D~~~~~~G~~ls~~~~~g~PI~fvg 608 (630)
+++++|+||+|++ .+.|.+++++..+++||.|+|
T Consensus 140 --~~~~viltk~D~~-~~~g~~~~~~~~~~~p~~~~~ 173 (173)
T cd03115 140 --GITGVILTKLDGD-ARGGAALSIRAVTGKPIKFIG 173 (173)
T ss_pred --CCCEEEEECCcCC-CCcchhhhhHHHHCcCeEeeC
Confidence 4789999999998 899999999999999999986
No 27
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.83 E-value=5.2e-20 Score=181.00 Aligned_cols=202 Identities=19% Similarity=0.167 Sum_probs=153.5
Q ss_pred HHHHcCCCcchhhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhh
Q psy11993 386 LVQILSPKRRVDILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHL 465 (630)
Q Consensus 386 L~~il~~~~~~~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l 465 (630)
+.+.|+ ...+|++|++++.+| ++++||||+||||||+|++|.++-.+++|.|.+.+.++.......++|...+++
T Consensus 8 l~K~fg---~~~VLkgi~l~v~~G--evv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~vGmV 82 (240)
T COG1126 8 LSKSFG---DKEVLKGISLSVEKG--EVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKVGMV 82 (240)
T ss_pred eeEEeC---CeEEecCcceeEcCC--CEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHhcCee
Confidence 344555 357899999999999 999999999999999999999999999999999997774433555667766666
Q ss_pred cccCC-CcCCcchhhhHhhhc-cCCCCHHHHHHHHHHHhhhcC----CCeeeeccccchhchHHHHHHHHhhhhhcCCCe
Q psy11993 466 CSLHP-AAKHGGREMVQLFEK-GYGKDPAEIAFRAISHARDMH----IDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDL 539 (630)
Q Consensus 466 ~~~~~-~~~~tv~env~l~~~-~~~~d~~~ia~~ai~~a~~~~----~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~ 539 (630)
.+.+. +|++|+.+|+.+... ..+....+....|++.+..-+ .|...-.+|||+||+.+|+|+|+ ++| .
T Consensus 83 FQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALa-----M~P-~ 156 (240)
T COG1126 83 FQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALA-----MDP-K 156 (240)
T ss_pred cccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHc-----CCC-C
Confidence 66444 889999999988653 234445555555555554433 36668889999999999999999 999 5
Q ss_pred EEEEeccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcccCCcCccHHHHHHHHHHhCCcEEEEecCCCC
Q psy11993 540 LLFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGTGQTY 613 (630)
Q Consensus 540 VLlV~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK~D~~~~~~G~~ls~~~~~g~PI~fvg~Gq~v 613 (630)
+++.||||+++|.... ...-..+.+++. .+.+.+|+|+ -.|.|-.++. .|.|+-.|..+
T Consensus 157 vmLFDEPTSALDPElv-~EVL~vm~~LA~----eGmTMivVTH------EM~FAr~Vad----rviFmd~G~ii 215 (240)
T COG1126 157 VMLFDEPTSALDPELV-GEVLDVMKDLAE----EGMTMIIVTH------EMGFAREVAD----RVIFMDQGKII 215 (240)
T ss_pred EEeecCCcccCCHHHH-HHHHHHHHHHHH----cCCeEEEEec------hhHHHHHhhh----eEEEeeCCEEE
Confidence 6668999999997542 333444555543 3789999997 3677777776 59999999543
No 28
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=99.80 E-value=8.5e-20 Score=177.42 Aligned_cols=170 Identities=24% Similarity=0.321 Sum_probs=129.6
Q ss_pred HHHHHcCCCcchhhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhh
Q psy11993 385 ALVQILSPKRRVDILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRH 464 (630)
Q Consensus 385 ~L~~il~~~~~~~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~ 464 (630)
.|++-|++ ...+++|++|....| ++++|+||||+||||+|++||.++.|+.|+|.+.++|+.|-.. ..|++.+.
T Consensus 6 ~l~K~y~~--~v~AvrdVSF~ae~G--ei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~p~--~vrr~IGV 79 (245)
T COG4555 6 DLTKSYGS--KVQAVRDVSFEAEEG--EITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPS--FVRRKIGV 79 (245)
T ss_pred ehhhhccC--HHhhhhheeEEeccc--eEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccChH--HHhhhcce
Confidence 35566654 456899999999999 9999999999999999999999999999999999999977543 23444444
Q ss_pred hcccCC-CcCCcchhhhHhhhccCCCCHHHHHHHHHHHhhhcCC----CeeeeccccchhchHHHHHHHHhhhhhcCCCe
Q psy11993 465 LCSLHP-AAKHGGREMVQLFEKGYGKDPAEIAFRAISHARDMHI----DVVLIDTAGRMQDNEPLMRALAKLVKVNQPDL 539 (630)
Q Consensus 465 l~~~~~-~~~~tv~env~l~~~~~~~d~~~ia~~ai~~a~~~~~----D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~ 539 (630)
+..... +..+|+++|+.++...++....++..+.-+..+..++ |......|.+|.++..++|+|. .+| .
T Consensus 80 l~~e~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARAlv-----h~P-~ 153 (245)
T COG4555 80 LFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALV-----HDP-S 153 (245)
T ss_pred ecCCcChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHHHHHh-----cCC-C
Confidence 443222 6689999999999988887655554444333333222 3345667899999999999999 888 4
Q ss_pred EEEEeccccCccHHHHHHHHHHHHhhcc
Q psy11993 540 LLFVGEALVGNEAVDQLVKFNNAMADHS 567 (630)
Q Consensus 540 VLlV~E~~~g~Dav~ql~~f~~~l~~~~ 567 (630)
+++.|||++|+|... .+.|.+.+.+..
T Consensus 154 i~vlDEP~sGLDi~~-~r~~~dfi~q~k 180 (245)
T COG4555 154 ILVLDEPTSGLDIRT-RRKFHDFIKQLK 180 (245)
T ss_pred eEEEcCCCCCccHHH-HHHHHHHHHHhh
Confidence 566899999999765 456666665544
No 29
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.80 E-value=1.6e-19 Score=180.97 Aligned_cols=219 Identities=17% Similarity=0.181 Sum_probs=162.9
Q ss_pred HHHHHcCCCcchhhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhh
Q psy11993 385 ALVQILSPKRRVDILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRH 464 (630)
Q Consensus 385 ~L~~il~~~~~~~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~ 464 (630)
.+++.|++ ..+++++++.++.| ++++|+||+|||||||+++|.+++.|+.|+|+|.+.|+.....+ .||+..+|
T Consensus 6 nvsk~y~~---~~av~~v~l~I~~g--ef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~-~LRr~IGY 79 (309)
T COG1125 6 NVSKRYGN---KKAVDDVNLTIEEG--EFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPV-ELRRKIGY 79 (309)
T ss_pred eeehhcCC---ceeeeeeeEEecCC--eEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHH-HHHHhhhh
Confidence 34455553 45788999999999 99999999999999999999999999999999999999666666 55665555
Q ss_pred hcc-cCCCcCCcchhhhHhhhccCCCCHHHHHHHHHHHhhhcCC------CeeeeccccchhchHHHHHHHHhhhhhcCC
Q psy11993 465 LCS-LHPAAKHGGREMVQLFEKGYGKDPAEIAFRAISHARDMHI------DVVLIDTAGRMQDNEPLMRALAKLVKVNQP 537 (630)
Q Consensus 465 l~~-~~~~~~~tv~env~l~~~~~~~d~~~ia~~ai~~a~~~~~------D~vlIDTaGr~~~~~~L~~aL~kl~~~~~P 537 (630)
+-+ ...+|++|+.+|+.+.....+.+...+..++-+.+..-++ +...-.+|||+||+..++|||+ .+|
T Consensus 80 viQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALA-----adP 154 (309)
T COG1125 80 VIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALA-----ADP 154 (309)
T ss_pred hhhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHh-----cCC
Confidence 544 4448999999999999998888988887777766655544 3446788999999999999999 888
Q ss_pred CeEEEEeccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcc-cCCcCccHHHHHHHHHHhCCcEEEEecCCCC---
Q psy11993 538 DLLLFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTK-FDTIDDKVGAAISMTYITGQPIVFVGTGQTY--- 613 (630)
Q Consensus 538 d~VLlV~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK-~D~~~~~~G~~ls~~~~~g~PI~fvg~Gq~v--- 613 (630)
.+|+.|||..++|++...+. .+.+.++.. ..+.+.|.+|+ +||+ +.++. .|.-...|.-+
T Consensus 155 -~ilLMDEPFgALDpI~R~~l-Q~e~~~lq~---~l~kTivfVTHDidEA-------~kLad----ri~vm~~G~i~Q~~ 218 (309)
T COG1125 155 -PILLMDEPFGALDPITRKQL-QEEIKELQK---ELGKTIVFVTHDIDEA-------LKLAD----RIAVMDAGEIVQYD 218 (309)
T ss_pred -CeEeecCCccccChhhHHHH-HHHHHHHHH---HhCCEEEEEecCHHHH-------Hhhhc----eEEEecCCeEEEeC
Confidence 57779999999999865332 222222221 23678899998 5553 22222 35555555433
Q ss_pred -c-cCCCCCHHHHHHHhhC
Q psy11993 614 -T-DLKSLNAKAVVNALMK 630 (630)
Q Consensus 614 -~-DL~~~~~~~~v~~Ll~ 630 (630)
| ++-.-.+..||+.+++
T Consensus 219 ~P~~il~~Pan~FV~~f~g 237 (309)
T COG1125 219 TPDEILANPANDFVEDFFG 237 (309)
T ss_pred CHHHHHhCccHHHHHHHhc
Confidence 3 4666667777777653
No 30
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.80 E-value=7.5e-20 Score=182.34 Aligned_cols=174 Identities=21% Similarity=0.154 Sum_probs=134.4
Q ss_pred hhhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccCC----C
Q psy11993 396 VDILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHP----A 471 (630)
Q Consensus 396 ~~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~----~ 471 (630)
..+++++++.+.+| ++++|+||+|+||||+++.|.++++|+.|.|.+.+.|+-.....++ .....+++..++ +
T Consensus 21 ~~Ild~v~l~V~~G--ei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~-~~ir~r~GvlFQ~gALF 97 (263)
T COG1127 21 RVILDGVDLDVPRG--EILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEEL-YEIRKRMGVLFQQGALF 97 (263)
T ss_pred EEEecCceeeecCC--cEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHH-HHHHhheeEEeeccccc
Confidence 35789999999999 9999999999999999999999999999999999999866665433 344455555554 6
Q ss_pred cCCcchhhhHhhhccCCC-CHHHHHHHHHHHhhhcC-----CCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEec
Q psy11993 472 AKHGGREMVQLFEKGYGK-DPAEIAFRAISHARDMH-----IDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGE 545 (630)
Q Consensus 472 ~~~tv~env~l~~~~~~~-d~~~ia~~ai~~a~~~~-----~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E 545 (630)
..+|+.+||.+....+.. +...+..-++..++.-+ .+...-..||+|+.+..|+|||+ .+| .++|.||
T Consensus 98 ssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRvaLARAia-----ldP-ell~~DE 171 (263)
T COG1127 98 SSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVALARAIA-----LDP-ELLFLDE 171 (263)
T ss_pred cccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHHHHHHHHh-----cCC-CEEEecC
Confidence 789999999987655543 33333333333333322 35557788999999999999999 899 6777999
Q ss_pred cccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 546 ALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 546 ~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
|++|+|.+. +..|.+.+++... ..+.+.+++|+
T Consensus 172 PtsGLDPI~-a~~~~~LI~~L~~---~lg~T~i~VTH 204 (263)
T COG1127 172 PTSGLDPIS-AGVIDELIRELND---ALGLTVIMVTH 204 (263)
T ss_pred CCCCCCcch-HHHHHHHHHHHHH---hhCCEEEEEEC
Confidence 999999886 3566666665543 35899999998
No 31
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.79 E-value=6.9e-19 Score=176.51 Aligned_cols=193 Identities=18% Similarity=0.122 Sum_probs=134.3
Q ss_pred hhhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccCC----C
Q psy11993 396 VDILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHP----A 471 (630)
Q Consensus 396 ~~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~----~ 471 (630)
..+|++++|.+++| ++++|+||+||||||++++|+++..|++|.|.+.+.|+......+........+++.++ .
T Consensus 18 ~~~L~~v~l~i~~G--e~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~nLl 95 (226)
T COG1136 18 VEALKDVNLEIEAG--EFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLL 95 (226)
T ss_pred eEecccceEEEcCC--CEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHHHHhEEEECccCCCC
Confidence 67999999999999 99999999999999999999999999999999999998776644333223333444333 7
Q ss_pred cCCcchhhhHhhhccCCCCHHHHHHHHHHHhhhcCCC-----eeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEecc
Q psy11993 472 AKHGGREMVQLFEKGYGKDPAEIAFRAISHARDMHID-----VVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEA 546 (630)
Q Consensus 472 ~~~tv~env~l~~~~~~~d~~~ia~~ai~~a~~~~~D-----~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~ 546 (630)
+.+|+.+||.+.....+.........+...+...+.. ..+-..|||++|+.+++|+|+ ++| .+|+.|||
T Consensus 96 ~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~-----~~P-~iilADEP 169 (226)
T COG1136 96 PDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALI-----NNP-KIILADEP 169 (226)
T ss_pred CCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHh-----cCC-CeEEeeCc
Confidence 8899999998754333333212222222222322332 446688999999999999999 889 56669999
Q ss_pred ccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcccCCcCccHHHHHHHHHHhCCcEEEEecCC
Q psy11993 547 LVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGTGQ 611 (630)
Q Consensus 547 ~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK~D~~~~~~G~~ls~~~~~g~PI~fvg~Gq 611 (630)
|..+|...--. .-+.+.++.. ..+.+.|++|+ |. . +....-.+.++-.|+
T Consensus 170 TgnLD~~t~~~-V~~ll~~~~~---~~g~tii~VTH-d~---~-------lA~~~dr~i~l~dG~ 219 (226)
T COG1136 170 TGNLDSKTAKE-VLELLRELNK---ERGKTIIMVTH-DP---E-------LAKYADRVIELKDGK 219 (226)
T ss_pred cccCChHHHHH-HHHHHHHHHH---hcCCEEEEEcC-CH---H-------HHHhCCEEEEEeCCe
Confidence 99998765332 2333444432 23678999998 22 1 112333567777776
No 32
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=99.79 E-value=4.7e-19 Score=180.95 Aligned_cols=196 Identities=18% Similarity=0.168 Sum_probs=147.7
Q ss_pred hhhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccCC-CcCC
Q psy11993 396 VDILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHP-AAKH 474 (630)
Q Consensus 396 ~~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~-~~~~ 474 (630)
..+|++++|.+++| ++++|+|||||||||++++|++++.|..|.|++.+.|+.+.... ++.....++++.+. ++.+
T Consensus 15 ~~il~~ls~~i~~G--~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~k-elAk~ia~vpQ~~~~~~~~ 91 (258)
T COG1120 15 KPILDDLSFSIPKG--EITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPK-ELAKKLAYVPQSPSAPFGL 91 (258)
T ss_pred eeEEecceEEecCC--cEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHH-HHhhhEEEeccCCCCCCCc
Confidence 45899999999999 99999999999999999999999999999999999999877655 44555666776544 6679
Q ss_pred cchhhhHhhhccC-------CCCHHHHHHHHHHHhhhcCCC-eeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEecc
Q psy11993 475 GGREMVQLFEKGY-------GKDPAEIAFRAISHARDMHID-VVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEA 546 (630)
Q Consensus 475 tv~env~l~~~~~-------~~d~~~ia~~ai~~a~~~~~D-~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~ 546 (630)
|+.+.|.+....| +....+.+.++++......+. ..+-+.|||++|+..++++|+ .+| .+|++|||
T Consensus 92 tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArALa-----Q~~-~iLLLDEP 165 (258)
T COG1120 92 TVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARALA-----QET-PILLLDEP 165 (258)
T ss_pred EEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHHHh-----cCC-CEEEeCCC
Confidence 9999998764432 122333566677766655553 345567999999999999999 777 57779999
Q ss_pred ccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcccCCcCccHHHHHHHHHHhCCcEEEEecCCCCc
Q psy11993 547 LVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGTGQTYT 614 (630)
Q Consensus 547 ~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK~D~~~~~~G~~ls~~~~~g~PI~fvg~Gq~v~ 614 (630)
++.+|.-.|...+. .++++.. ..+++.|++++ | ++.+..+.--+..+-.|+-+.
T Consensus 166 Ts~LDi~~Q~evl~-ll~~l~~---~~~~tvv~vlH-D---------lN~A~ryad~~i~lk~G~i~a 219 (258)
T COG1120 166 TSHLDIAHQIEVLE-LLRDLNR---EKGLTVVMVLH-D---------LNLAARYADHLILLKDGKIVA 219 (258)
T ss_pred ccccCHHHHHHHHH-HHHHHHH---hcCCEEEEEec-C---------HHHHHHhCCEEEEEECCeEEe
Confidence 99999999987654 4555542 23677777776 2 244555555677777776553
No 33
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.78 E-value=3.6e-19 Score=189.11 Aligned_cols=214 Identities=19% Similarity=0.151 Sum_probs=150.6
Q ss_pred HHHHcCCCcchhhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhh
Q psy11993 386 LVQILSPKRRVDILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHL 465 (630)
Q Consensus 386 L~~il~~~~~~~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l 465 (630)
+++.|+ ...+|+|+++.+.+| ++++|+||+||||||+|++||++..|++|+|.+.+.|+.+..+. ++...++
T Consensus 11 v~k~yg---~~~av~~isl~i~~G--ef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~---kR~ig~V 82 (352)
T COG3842 11 VSKSFG---DFTAVDDISLDIKKG--EFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPE---KRPIGMV 82 (352)
T ss_pred eeeecC---CeeEEecceeeecCC--cEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChh---hccccee
Confidence 444555 356899999999999 99999999999999999999999999999999999999886654 3344555
Q ss_pred cccCC-CcCCcchhhhHhhhccCC-CCHHHH---HHHHHHHhhhcCC-CeeeeccccchhchHHHHHHHHhhhhhcCCCe
Q psy11993 466 CSLHP-AAKHGGREMVQLFEKGYG-KDPAEI---AFRAISHARDMHI-DVVLIDTAGRMQDNEPLMRALAKLVKVNQPDL 539 (630)
Q Consensus 466 ~~~~~-~~~~tv~env~l~~~~~~-~d~~~i---a~~ai~~a~~~~~-D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~ 539 (630)
.+... +|+|||.+||.|..+... ....++ +.++++.....++ +......||+++|+..|+|+|+ .+| .
T Consensus 83 FQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQRVALARAL~-----~~P-~ 156 (352)
T COG3842 83 FQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVALARALV-----PEP-K 156 (352)
T ss_pred ecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhChhhhChHHHHHHHHHHHhh-----cCc-c
Confidence 55444 889999999999877322 333444 3444444444444 3446788999999999999999 889 5
Q ss_pred EEEEeccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcccCCcCccHHHHHHHHHHhCCcEEEEecCCC--C--c-
Q psy11993 540 LLFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGTGQT--Y--T- 614 (630)
Q Consensus 540 VLlV~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK~D~~~~~~G~~ls~~~~~g~PI~fvg~Gq~--v--~- 614 (630)
+|++|||+..+|..-. ..+...++++.. ..+++.|.+|+ | -..++.|... |.-...|+- + |
T Consensus 157 vLLLDEPlSaLD~kLR-~~mr~Elk~lq~---~~giT~i~VTH----D--qeEAl~msDr----I~Vm~~G~I~Q~gtP~ 222 (352)
T COG3842 157 VLLLDEPLSALDAKLR-EQMRKELKELQR---ELGITFVYVTH----D--QEEALAMSDR----IAVMNDGRIEQVGTPE 222 (352)
T ss_pred hhhhcCcccchhHHHH-HHHHHHHHHHHH---hcCCeEEEEEC----C--HHHHhhhccc----eEEccCCceeecCCHH
Confidence 6679999999986422 233334444432 35899999998 2 4456666653 444444422 1 2
Q ss_pred cCCCCCHHHHHHH
Q psy11993 615 DLKSLNAKAVVNA 627 (630)
Q Consensus 615 DL~~~~~~~~v~~ 627 (630)
+|-.-....+|..
T Consensus 223 eiY~~P~~~fVA~ 235 (352)
T COG3842 223 EIYERPATRFVAD 235 (352)
T ss_pred HHhhCcchHHHHH
Confidence 4444444455443
No 34
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=99.78 E-value=3.5e-18 Score=164.94 Aligned_cols=204 Identities=19% Similarity=0.154 Sum_probs=156.2
Q ss_pred HHHHcCCCcchhhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccH--HHHHHHHHh
Q psy11993 386 LVQILSPKRRVDILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGA--VEQLRTHVR 463 (630)
Q Consensus 386 L~~il~~~~~~~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga--~eQLr~~~~ 463 (630)
..+-|... ..+|+||+|.+++| +++.++||+|+||||+++.|++..+|+.|+|.+.++|.-+... +..||+..+
T Consensus 7 V~k~Y~~g--~~aL~~vs~~i~~G--ef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR~IG 82 (223)
T COG2884 7 VSKAYPGG--REALRDVSFHIPKG--EFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQIG 82 (223)
T ss_pred hhhhcCCC--chhhhCceEeecCc--eEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhheee
Confidence 34445432 56999999999999 9999999999999999999999999999999999999877654 345777777
Q ss_pred hhcccCC-CcCCcchhhhHhhhccCCCCHHHHHHHHHHHhhhcCC----CeeeeccccchhchHHHHHHHHhhhhhcCCC
Q psy11993 464 HLCSLHP-AAKHGGREMVQLFEKGYGKDPAEIAFRAISHARDMHI----DVVLIDTAGRMQDNEPLMRALAKLVKVNQPD 538 (630)
Q Consensus 464 ~l~~~~~-~~~~tv~env~l~~~~~~~d~~~ia~~ai~~a~~~~~----D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd 538 (630)
++.|++. .+..|+.+||.+.....+..+.++.+++.+.+..-++ .......||+.||+..++||+. ++|
T Consensus 83 vVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV-----~~P- 156 (223)
T COG2884 83 VVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIV-----NQP- 156 (223)
T ss_pred eEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHc-----cCC-
Confidence 7777665 6789999999998877788887777666655544332 4557788999999999999999 889
Q ss_pred eEEEEeccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcccCCcCccHHHHHHHHHHhCCcEEEEecCCCCc
Q psy11993 539 LLLFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGTGQTYT 614 (630)
Q Consensus 539 ~VLlV~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK~D~~~~~~G~~ls~~~~~g~PI~fvg~Gq~v~ 614 (630)
.+|+.|||+-.+|.......++ .+.++ +..+.+.+|.|+ | ..++...+.|+.-+..|.-+-
T Consensus 157 ~vLlADEPTGNLDp~~s~~im~-lfeei----nr~GtTVl~ATH-d---------~~lv~~~~~rvl~l~~Grl~~ 217 (223)
T COG2884 157 AVLLADEPTGNLDPDLSWEIMR-LFEEI----NRLGTTVLMATH-D---------LELVNRMRHRVLALEDGRLVR 217 (223)
T ss_pred CeEeecCCCCCCChHHHHHHHH-HHHHH----hhcCcEEEEEec-c---------HHHHHhccCcEEEEeCCEEEe
Confidence 6777999998888643322221 22222 245788899887 2 255666778998888886543
No 35
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=99.77 E-value=1.1e-18 Score=183.34 Aligned_cols=173 Identities=17% Similarity=0.178 Sum_probs=137.6
Q ss_pred hhhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccCC-CcCC
Q psy11993 396 VDILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHP-AAKH 474 (630)
Q Consensus 396 ~~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~-~~~~ 474 (630)
..+|++|+|.+.+| ++++|+||||||||||+++|++.+.|++|+|.+.+.|..+. ..+.+....++++.+. ++.+
T Consensus 18 ~~~l~~vs~~i~~G--ei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~--~~~~~~~igy~~~~~~~~~~l 93 (293)
T COG1131 18 KTALDGVSFEVEPG--EIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKE--PAKVRRRIGYVPQEPSLYPEL 93 (293)
T ss_pred CEEEeceeEEEcCC--eEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccC--HHHHHhheEEEccCCCCCccc
Confidence 46899999999999 99999999999999999999999999999999999998764 4456667777776544 7889
Q ss_pred cchhhhHhhhccCCCCH---HHHHHHHHHHhhhcCC-CeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCc
Q psy11993 475 GGREMVQLFEKGYGKDP---AEIAFRAISHARDMHI-DVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGN 550 (630)
Q Consensus 475 tv~env~l~~~~~~~d~---~~ia~~ai~~a~~~~~-D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~ 550 (630)
|+++++.++...++... .+.+.+.++.+..... +..+-..|+||+++..++.+|. .+| .++++|||++|+
T Consensus 94 T~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL~-----~~P-~lliLDEPt~GL 167 (293)
T COG1131 94 TVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALALL-----HDP-ELLILDEPTSGL 167 (293)
T ss_pred cHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHHHHh-----cCC-CEEEECCCCcCC
Confidence 99999999998888643 2344555555554432 3446678999999999999999 899 677799999999
Q ss_pred cHHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 551 EAVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 551 Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
|+... ..|.+.+++++... +.+.++.|+
T Consensus 168 Dp~~~-~~~~~~l~~l~~~g---~~tvlissH 195 (293)
T COG1131 168 DPESR-REIWELLRELAKEG---GVTILLSTH 195 (293)
T ss_pred CHHHH-HHHHHHHHHHHhCC---CcEEEEeCC
Confidence 98764 56677787776532 255666665
No 36
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.76 E-value=3.6e-18 Score=167.58 Aligned_cols=173 Identities=20% Similarity=0.155 Sum_probs=133.9
Q ss_pred hhhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhc-----CCeEEEeecccCCcc-HHHHHHHHHhhhcccC
Q psy11993 396 VDILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIEN-----NLNVLIAACDTFRAG-AVEQLRTHVRHLCSLH 469 (630)
Q Consensus 396 ~~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~-----ggkVlI~~~Dt~R~g-a~eQLr~~~~~l~~~~ 469 (630)
..+|++|++.++++ .|.+|+||+||||||+|++|.++.... .|+|.+.+.|+|... .+-.||+.++++.+.+
T Consensus 20 ~~aL~~i~l~i~~~--~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~~lRr~vGMVFQkP 97 (253)
T COG1117 20 KHALKDINLDIPKN--KVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVVELRRRVGMVFQKP 97 (253)
T ss_pred hhhhccCceeccCC--ceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHHHHHHHheeeccCC
Confidence 57899999999999 999999999999999999999876543 489999999998763 3457888888887766
Q ss_pred CCcCCcchhhhHhhhccCCCCHH---HHHHHHHHHhhhcC-----CCeeeeccccchhchHHHHHHHHhhhhhcCCCeEE
Q psy11993 470 PAAKHGGREMVQLFEKGYGKDPA---EIAFRAISHARDMH-----IDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLL 541 (630)
Q Consensus 470 ~~~~~tv~env~l~~~~~~~d~~---~ia~~ai~~a~~~~-----~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VL 541 (630)
.|+.+++.+||.+..+.++.... +++..++..+...+ ++.--..+|||+||+..++|+|+ .+| .||
T Consensus 98 nPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQRLcIARalA-----v~P-eVl 171 (253)
T COG1117 98 NPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRLCIARALA-----VKP-EVL 171 (253)
T ss_pred CCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHHHHHHHHHHHh-----cCC-cEE
Confidence 66669999999998887775442 23444444443321 12225668999999999999999 999 677
Q ss_pred EEeccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 542 FVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 542 lV~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
++|||++++|.+..+ +..+.+..+.. ..+.||+|+
T Consensus 172 LmDEPtSALDPIsT~-kIEeLi~eLk~-----~yTIviVTH 206 (253)
T COG1117 172 LMDEPTSALDPISTL-KIEELITELKK-----KYTIVIVTH 206 (253)
T ss_pred EecCcccccCchhHH-HHHHHHHHHHh-----ccEEEEEeC
Confidence 899999999998754 34444544443 688999998
No 37
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.76 E-value=1.6e-18 Score=174.62 Aligned_cols=172 Identities=21% Similarity=0.147 Sum_probs=129.6
Q ss_pred hhhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccC-CCcCC
Q psy11993 396 VDILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLH-PAAKH 474 (630)
Q Consensus 396 ~~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~-~~~~~ 474 (630)
..+|+||++++.+| ++++|+||+||||||+++.||++..+..|.|.+.+....+++.. ..++.|.+ .+|..
T Consensus 16 ~~vl~~i~L~v~~G--EfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p~~~------~~~vFQ~~~LlPW~ 87 (248)
T COG1116 16 VEVLEDINLSVEKG--EFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPD------IGYVFQEDALLPWL 87 (248)
T ss_pred eEEeccceeEECCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCCCCC------EEEEeccCcccchh
Confidence 56899999999999 99999999999999999999999999999999998766444321 23344433 37779
Q ss_pred cchhhhHhhhccCCCCH---HHHHHHHHHHhhhcCC-CeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCc
Q psy11993 475 GGREMVQLFEKGYGKDP---AEIAFRAISHARDMHI-DVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGN 550 (630)
Q Consensus 475 tv~env~l~~~~~~~d~---~~ia~~ai~~a~~~~~-D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~ 550 (630)
|+.+||.+.....+... .+.+.+.++.....++ |...-..||||+|+..++|+|+ ..| .+|++|||...+
T Consensus 88 Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiARAL~-----~~P-~lLLlDEPFgAL 161 (248)
T COG1116 88 TVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIARALA-----TRP-KLLLLDEPFGAL 161 (248)
T ss_pred hHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCccccChHHHHHHHHHHHHh-----cCC-CEEEEcCCcchh
Confidence 99999998766544333 3345555655555555 5567788999999999999999 889 577799999999
Q ss_pred cHHHHHHHHHHHHhhcccCCCCCCeeEEEEcc-cCC
Q psy11993 551 EAVDQLVKFNNAMADHSLSDNPHLIDGIVLTK-FDT 585 (630)
Q Consensus 551 Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK-~D~ 585 (630)
|+...... .+.+.++-. ....+.+++|+ +||
T Consensus 162 DalTR~~l-q~~l~~lw~---~~~~TvllVTHdi~E 193 (248)
T COG1116 162 DALTREEL-QDELLRLWE---ETRKTVLLVTHDVDE 193 (248)
T ss_pred hHHHHHHH-HHHHHHHHH---hhCCEEEEEeCCHHH
Confidence 99875443 333333322 23588999998 443
No 38
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=99.75 E-value=1.8e-18 Score=182.86 Aligned_cols=170 Identities=20% Similarity=0.156 Sum_probs=131.6
Q ss_pred hhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccCC-CcCCcc
Q psy11993 398 ILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHP-AAKHGG 476 (630)
Q Consensus 398 iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~-~~~~tv 476 (630)
+|+++++.+..| ++++|+|||||||||+|++|||+..+++|+|.|.+.|....... ++...++.|... +|+|||
T Consensus 18 ~l~~i~l~i~~G--ef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~---~R~iamVFQ~yALyPhmtV 92 (338)
T COG3839 18 VLKDVNLDIEDG--EFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPE---KRGIAMVFQNYALYPHMTV 92 (338)
T ss_pred eeecceEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChh---HCCEEEEeCCccccCCCcH
Confidence 889999999999 99999999999999999999999999999999999998665443 233444444433 889999
Q ss_pred hhhhHhhhccCCCCHHHHHHHHHHHhhhcCC----CeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCccH
Q psy11993 477 REMVQLFEKGYGKDPAEIAFRAISHARDMHI----DVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEA 552 (630)
Q Consensus 477 ~env~l~~~~~~~d~~~ia~~ai~~a~~~~~----D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~Da 552 (630)
++|+.+..+..+....++.++..+.++..+. |...-.+||+++|+..++|+|. .+| .+++.|||++.+|+
T Consensus 93 ~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVAlaRAlV-----r~P-~v~L~DEPlSnLDa 166 (338)
T COG3839 93 YENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALARALV-----RKP-KVFLLDEPLSNLDA 166 (338)
T ss_pred HHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCcccCChhhHHHHHHHHHHh-----cCC-CEEEecCchhHhhH
Confidence 9999998877776666665555555554443 4456778999999999999999 889 47779999999987
Q ss_pred HHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 553 VDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 553 v~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
.-. ..+...+.++.. ..+++.|++|+
T Consensus 167 ~lR-~~mr~ei~~lh~---~l~~T~IYVTH 192 (338)
T COG3839 167 KLR-VLMRSEIKKLHE---RLGTTTIYVTH 192 (338)
T ss_pred HHH-HHHHHHHHHHHH---hcCCcEEEEcC
Confidence 533 223333443332 24688999998
No 39
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.73 E-value=1.8e-17 Score=170.59 Aligned_cols=190 Identities=21% Similarity=0.209 Sum_probs=143.4
Q ss_pred chhhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccH--HHHHHHHHhhhcccCC-C
Q psy11993 395 RVDILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGA--VEQLRTHVRHLCSLHP-A 471 (630)
Q Consensus 395 ~~~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga--~eQLr~~~~~l~~~~~-~ 471 (630)
.+.+|++|++.++.| ++++|||.+|+||||++++|.++-.|+.|+|.+.+.|+..... ..++|+...++.+.+- .
T Consensus 18 ~~~al~~vsL~I~~G--eI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~R~~IGMIFQhFnLL 95 (339)
T COG1135 18 TVTALDDVSLEIPKG--EIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLL 95 (339)
T ss_pred ceeeeccceEEEcCC--cEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHHHhhccEEecccccc
Confidence 467899999999999 9999999999999999999999999999999999988866543 3344444444444333 4
Q ss_pred cCCcchhhhHhhhccCCCCHHHHHHHHHHHhhhcCC----CeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccc
Q psy11993 472 AKHGGREMVQLFEKGYGKDPAEIAFRAISHARDMHI----DVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEAL 547 (630)
Q Consensus 472 ~~~tv~env~l~~~~~~~d~~~ia~~ai~~a~~~~~----D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~ 547 (630)
...|+.+||.+.....+....++..++.+.+..-++ +...-..|||+.|+..++|||+ ++| .+|+.||||
T Consensus 96 ssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQKQRVaIARALa-----~~P-~iLL~DEaT 169 (339)
T COG1135 96 SSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQRVAIARALA-----NNP-KILLCDEAT 169 (339)
T ss_pred ccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCchhcCcchhhHHHHHHHHh-----cCC-CEEEecCcc
Confidence 568999999988776676677777777666655443 4557788999999999999999 999 677799999
Q ss_pred cCccHH------HHHHHHHHHHhhcccCCCCCCeeEEEEcc-cCCcCccHHHHHHHHHHhCCcEEEEecCCCC
Q psy11993 548 VGNEAV------DQLVKFNNAMADHSLSDNPHLIDGIVLTK-FDTIDDKVGAAISMTYITGQPIVFVGTGQTY 613 (630)
Q Consensus 548 ~g~Dav------~ql~~f~~~l~~~~~~~~~~~i~gIIlTK-~D~~~~~~G~~ls~~~~~g~PI~fvg~Gq~v 613 (630)
+.+|+- +.++..|+. .+++.+++|+ +| .+-.++. .++.+..|+-+
T Consensus 170 SALDP~TT~sIL~LL~~In~~----------lglTIvlITHEm~-------Vvk~ic~----rVavm~~G~lv 221 (339)
T COG1135 170 SALDPETTQSILELLKDINRE----------LGLTIVLITHEME-------VVKRICD----RVAVLDQGRLV 221 (339)
T ss_pred ccCChHHHHHHHHHHHHHHHH----------cCCEEEEEechHH-------HHHHHhh----hheEeeCCEEE
Confidence 999964 333444444 4899999998 32 1223333 46666666544
No 40
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=99.73 E-value=1.4e-17 Score=175.91 Aligned_cols=172 Identities=17% Similarity=0.153 Sum_probs=129.5
Q ss_pred hhhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccCC-CcCC
Q psy11993 396 VDILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHP-AAKH 474 (630)
Q Consensus 396 ~~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~-~~~~ 474 (630)
..+|++|+|.+.+| ++++|+||||+|||||+++|++.+.++.|+|.+.+.|..+... ..+....++.+... ++.+
T Consensus 20 ~~~l~~vsl~i~~G--ei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~~--~~~~~ig~v~q~~~~~~~~ 95 (306)
T PRK13537 20 KLVVDGLSFHVQRG--ECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRAR--HARQRVGVVPQFDNLDPDF 95 (306)
T ss_pred eEEEecceEEEeCC--cEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccchH--HHHhcEEEEeccCcCCCCC
Confidence 35899999999999 9999999999999999999999999999999999998855332 34555666666544 5568
Q ss_pred cchhhhHhhhccCCCCHHHH---HHHHHHHhhhcC-CCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCc
Q psy11993 475 GGREMVQLFEKGYGKDPAEI---AFRAISHARDMH-IDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGN 550 (630)
Q Consensus 475 tv~env~l~~~~~~~d~~~i---a~~ai~~a~~~~-~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~ 550 (630)
|+.+|+.++...++.+..+. +.++++.+.... .+..+-..||+++++..++++|. .+| .+|++|||++|+
T Consensus 96 tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~aL~-----~~P-~lllLDEPt~gL 169 (306)
T PRK13537 96 TVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALV-----NDP-DVLVLDEPTTGL 169 (306)
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCchhhCCHHHHHHHHHHHHHh-----CCC-CEEEEeCCCcCC
Confidence 99999998776666543322 233444333222 24456678999999999999999 888 567799999999
Q ss_pred cHHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 551 EAVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 551 Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
|...+. .+.+.+.++.. .+.+.++.|+
T Consensus 170 D~~~~~-~l~~~l~~l~~----~g~till~sH 196 (306)
T PRK13537 170 DPQARH-LMWERLRSLLA----RGKTILLTTH 196 (306)
T ss_pred CHHHHH-HHHHHHHHHHh----CCCEEEEECC
Confidence 988764 45556666542 2566677776
No 41
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.71 E-value=3.2e-17 Score=172.74 Aligned_cols=171 Identities=19% Similarity=0.212 Sum_probs=125.8
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccCC-CcCCc
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHP-AAKHG 475 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~-~~~~t 475 (630)
.+|++++|.+.+| ++++|+||||+||||++++|++++.|..|+|.+.+.+..+.. ..++....++.+... ++.+|
T Consensus 7 ~~l~~vs~~i~~G--e~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~--~~~~~~i~~~~q~~~~~~~~t 82 (302)
T TIGR01188 7 KAVDGVNFKVREG--EVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREP--RKVRRSIGIVPQYASVDEDLT 82 (302)
T ss_pred eEEeeeeEEEcCC--cEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCH--HHHHhhcEEecCCCCCCCCCc
Confidence 4789999999999 999999999999999999999999999999999998875422 234445556655443 56689
Q ss_pred chhhhHhhhccCCCCHHH---HHHHHHHHhhhcC-CCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCcc
Q psy11993 476 GREMVQLFEKGYGKDPAE---IAFRAISHARDMH-IDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNE 551 (630)
Q Consensus 476 v~env~l~~~~~~~d~~~---ia~~ai~~a~~~~-~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~D 551 (630)
+.+|+.++...++..... .+.++++.+.... .+..+-..|||++++..++++|. .+| .+|++|||+.|+|
T Consensus 83 v~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~-----~~p-~lllLDEPt~gLD 156 (302)
T TIGR01188 83 GRENLEMMGRLYGLPKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLI-----HQP-DVLFLDEPTTGLD 156 (302)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhCCchhhCCHHHHHHHHHHHHHh-----cCC-CEEEEeCCCcCCC
Confidence 999998866545443322 2333444433322 24456778999999999999999 888 5667999999999
Q ss_pred HHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 552 AVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 552 av~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
...+ ..+.+.+.++.. .+.+.+++|+
T Consensus 157 ~~~~-~~l~~~l~~~~~----~g~tvi~~sH 182 (302)
T TIGR01188 157 PRTR-RAIWDYIRALKE----EGVTILLTTH 182 (302)
T ss_pred HHHH-HHHHHHHHHHHh----CCCEEEEECC
Confidence 8765 445556666543 2456677776
No 42
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.70 E-value=7e-17 Score=163.45 Aligned_cols=211 Identities=19% Similarity=0.210 Sum_probs=142.0
Q ss_pred HHHHHHHHHHcCCCc-chhhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHH
Q psy11993 380 STLTDALVQILSPKR-RVDILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQL 458 (630)
Q Consensus 380 ~~l~~~L~~il~~~~-~~~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQL 458 (630)
..+...|..++.++. .+.+++||+|.+++| ++++|+||||+|||||+++|.|.+.|.+|+|.+.+.|+||.. .+.+
T Consensus 20 pgl~g~l~~~~~~k~~~~~AVqdisf~IP~G--~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~~Pf~~~-~~~~ 96 (325)
T COG4586 20 PGLKGSLNHFFHRKERSIEAVQDISFEIPKG--EIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRR-EEYL 96 (325)
T ss_pred chhHHHHHhhcCchhhhhhhhheeeeecCCC--cEEEEEcCCCCcchhhHHHHhCccccCCCeEEecCcCcchhH-HHHH
Confidence 345667777777665 788999999999999 999999999999999999999999999999999999999832 2334
Q ss_pred HHHHhhhcccCC-CcCCcchhhhHhhhccCCCCHHHHHHHHHHHhhhcCCCee----eeccccchhchHHHHHHHHhhhh
Q psy11993 459 RTHVRHLCSLHP-AAKHGGREMVQLFEKGYGKDPAEIAFRAISHARDMHIDVV----LIDTAGRMQDNEPLMRALAKLVK 533 (630)
Q Consensus 459 r~~~~~l~~~~~-~~~~tv~env~l~~~~~~~d~~~ia~~ai~~a~~~~~D~v----lIDTaGr~~~~~~L~~aL~kl~~ 533 (630)
+...-.+++..+ ++.+.+.+.+.+....|.......+.+.-...+..+.+-. .--.|-|+..+..|+.+|.
T Consensus 97 ~~~~~v~gqk~ql~Wdlp~~ds~~v~~~Iy~Ipd~~F~~r~~~l~eiLdl~~~lk~~vr~LSlGqRmraeLaaaLL---- 172 (325)
T COG4586 97 RSIGLVMGQKLQLWWDLPALDSLEVLKLIYEIPDDEFAERLDFLTEILDLEGFLKWPVRKLSLGQRMRAELAAALL---- 172 (325)
T ss_pred HHHHHHhhhhheeeeechhhhhHHHHHHHHhCCHHHHHHHHHHHHHHhcchhhhhhhhhhccchHHHHHHHHHHhc----
Confidence 444444555444 5556677777666666665554444333322333333311 2234666667777777777
Q ss_pred hcCCCeEEEEeccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcc-cCCcCccHHHHHHHHHHhCCcEEEEecCCC
Q psy11993 534 VNQPDLLLFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTK-FDTIDDKVGAAISMTYITGQPIVFVGTGQT 612 (630)
Q Consensus 534 ~~~Pd~VLlV~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK-~D~~~~~~G~~ls~~~~~g~PI~fvg~Gq~ 612 (630)
++| .|||+||||.|+|...|.. ..+.++.|.. .+..+.+.-|+ ||. +-..+. .|.-+-.||-
T Consensus 173 -h~p-~VLfLDEpTvgLDV~aq~~-ir~Flke~n~---~~~aTVllTTH~~~d-------i~~lc~----rv~~I~~Gql 235 (325)
T COG4586 173 -HPP-KVLFLDEPTVGLDVNAQAN-IREFLKEYNE---ERQATVLLTTHIFDD-------IATLCD----RVLLIDQGQL 235 (325)
T ss_pred -CCC-cEEEecCCccCcchhHHHH-HHHHHHHHHH---hhCceEEEEecchhh-------HHHhhh----heEEeeCCcE
Confidence 566 8999999999999988764 3445555543 23445455454 222 222222 4666777776
Q ss_pred Cc
Q psy11993 613 YT 614 (630)
Q Consensus 613 v~ 614 (630)
+.
T Consensus 236 v~ 237 (325)
T COG4586 236 VF 237 (325)
T ss_pred ee
Confidence 64
No 43
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=99.70 E-value=4.6e-17 Score=174.35 Aligned_cols=171 Identities=19% Similarity=0.176 Sum_probs=126.8
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccCC-CcCCc
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHP-AAKHG 475 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~-~~~~t 475 (630)
.+|++++|.+.+| ++++|+||||+|||||+++|++.+.|+.|.|.+.+.|..... ...+....++.+... ++.+|
T Consensus 55 ~~l~~is~~i~~G--ei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~--~~~~~~ig~v~q~~~~~~~~t 130 (340)
T PRK13536 55 AVVNGLSFTVASG--ECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARA--RLARARIGVVPQFDNLDLEFT 130 (340)
T ss_pred EEEeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcch--HHHhccEEEEeCCccCCCCCc
Confidence 5899999999999 999999999999999999999999999999999998874332 233444555555433 56789
Q ss_pred chhhhHhhhccCCCCHHHH---HHHHHHHhhhcC-CCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCcc
Q psy11993 476 GREMVQLFEKGYGKDPAEI---AFRAISHARDMH-IDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNE 551 (630)
Q Consensus 476 v~env~l~~~~~~~d~~~i---a~~ai~~a~~~~-~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~D 551 (630)
+.+|+.++...++...... +.++++...... .+..+-+.||||+++..++++|. .+| .+|++|||++|+|
T Consensus 131 v~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~LS~G~kqrv~lA~aL~-----~~P-~lLiLDEPt~gLD 204 (340)
T PRK13536 131 VRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALI-----NDP-QLLILDEPTTGLD 204 (340)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhCCChhhCCHHHHHHHHHHHHHh-----cCC-CEEEEECCCCCCC
Confidence 9999988766555443322 223343333222 24456788999999999999999 888 5666999999999
Q ss_pred HHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 552 AVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 552 av~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
...+ ..|.+.+.++.. .+.+.++.|+
T Consensus 205 ~~~r-~~l~~~l~~l~~----~g~tilisSH 230 (340)
T PRK13536 205 PHAR-HLIWERLRSLLA----RGKTILLTTH 230 (340)
T ss_pred HHHH-HHHHHHHHHHHh----CCCEEEEECC
Confidence 8876 455666666542 2566677776
No 44
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=99.69 E-value=8.5e-17 Score=160.88 Aligned_cols=173 Identities=18% Similarity=0.127 Sum_probs=122.1
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccH--HHHHHHHHhhhcccCC-CcC
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGA--VEQLRTHVRHLCSLHP-AAK 473 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga--~eQLr~~~~~l~~~~~-~~~ 473 (630)
.+|++++|.+.+| ++++|+||||+||||+++.|++++.+..|+|.+.+.+...... ...++....++.+... ++.
T Consensus 17 ~il~~isl~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 94 (216)
T TIGR00960 17 PALDNLNFHITKG--EMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRRHIGMVFQDHRLLSD 94 (216)
T ss_pred eEEEeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHHhceEEecCcccccc
Confidence 4789999999999 9999999999999999999999999999999998877643221 1223444555555433 456
Q ss_pred CcchhhhHhhhccCCCCHH---HHHHHHHHHhhhcC-CCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccC
Q psy11993 474 HGGREMVQLFEKGYGKDPA---EIAFRAISHARDMH-IDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVG 549 (630)
Q Consensus 474 ~tv~env~l~~~~~~~d~~---~ia~~ai~~a~~~~-~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g 549 (630)
+|+.+|+.+.....+.... ..+.++++.+.... .+..+...|||++++..++++|. .+| .+|++|||+.|
T Consensus 95 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~-----~~p-~llllDEPt~~ 168 (216)
T TIGR00960 95 RTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALPMQLSGGEQQRVAIARAIV-----HKP-PLLLADEPTGN 168 (216)
T ss_pred ccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHh-----cCC-CEEEEeCCCCc
Confidence 8999999775433332222 22333444333222 23345678999999999999999 788 56669999999
Q ss_pred ccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 550 NEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 550 ~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
+|...+. .+.+.+.++.. .+.+.|++|+
T Consensus 169 LD~~~~~-~l~~~l~~~~~----~~~tii~vsH 196 (216)
T TIGR00960 169 LDPELSR-DIMRLFEEFNR----RGTTVLVATH 196 (216)
T ss_pred CCHHHHH-HHHHHHHHHHH----CCCEEEEEeC
Confidence 9987654 44455655532 1466788887
No 45
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=99.69 E-value=9.9e-17 Score=157.40 Aligned_cols=173 Identities=18% Similarity=0.140 Sum_probs=120.2
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCcc-HHHHHHHHHhhhcccC--CCcC
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAG-AVEQLRTHVRHLCSLH--PAAK 473 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~g-a~eQLr~~~~~l~~~~--~~~~ 473 (630)
.+|++++|.+.+| ++++|+||||+||||+++.|++++.+..|+|.+.+.+..... ....++....++.+.. ....
T Consensus 6 ~il~~vsl~i~~G--e~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 83 (190)
T TIGR01166 6 EVLKGLNFAAERG--EVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLFA 83 (190)
T ss_pred ceecceeEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecChhhcccc
Confidence 4789999999999 999999999999999999999999999999999887763211 1122333344444443 2334
Q ss_pred CcchhhhHhhhccCCCCHHHH---HHHHHHHhhhcC-CCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccC
Q psy11993 474 HGGREMVQLFEKGYGKDPAEI---AFRAISHARDMH-IDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVG 549 (630)
Q Consensus 474 ~tv~env~l~~~~~~~d~~~i---a~~ai~~a~~~~-~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g 549 (630)
.|+.+|+.+....++.+.... +.++++.+.... .+..+...||+++++..++++|. .+| .++++|||+.|
T Consensus 84 ~tv~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~-----~~p-~llllDEPt~~ 157 (190)
T TIGR01166 84 ADVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRERPTHCLSGGEKKRVAIAGAVA-----MRP-DVLLLDEPTAG 157 (190)
T ss_pred ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCchhhhhCChhhCCHHHHHHHHHHHHHh-----cCC-CEEEEcCCccc
Confidence 699999976433233333222 233333332221 24456788999999999999999 788 56679999999
Q ss_pred ccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 550 NEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 550 ~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
+|...+ ..+.+.+.++.. .+.+.+++|+
T Consensus 158 LD~~~~-~~~~~~l~~~~~----~~~tili~sH 185 (190)
T TIGR01166 158 LDPAGR-EQMLAILRRLRA----EGMTVVISTH 185 (190)
T ss_pred CCHHHH-HHHHHHHHHHHH----cCCEEEEEee
Confidence 998765 445556665543 2467777776
No 46
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.69 E-value=3.7e-17 Score=168.32 Aligned_cols=200 Identities=22% Similarity=0.206 Sum_probs=145.0
Q ss_pred hhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHH-Hhhhc---ccCC-Cc
Q psy11993 398 ILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTH-VRHLC---SLHP-AA 472 (630)
Q Consensus 398 iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~-~~~l~---~~~~-~~ 472 (630)
-+.+++|.+..| ++++|.|.+||||||++++|.++..|+.|+|++.+.|+.+..+. .|+.+ ...+. +.+. +|
T Consensus 43 Gv~~~sl~v~~G--eIfViMGLSGSGKSTLvR~~NrLiept~G~ilv~g~di~~~~~~-~Lr~~Rr~~~sMVFQ~FaLlP 119 (386)
T COG4175 43 GVNDASLDVEEG--EIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAA-ELRELRRKKISMVFQSFALLP 119 (386)
T ss_pred eeccceeeecCC--eEEEEEecCCCCHHHHHHHHhccCCCCCceEEECCcchhcCCHH-HHHHHHhhhhhhhhhhhcccc
Confidence 356789999999 99999999999999999999999999999999999999888765 33332 22333 3333 77
Q ss_pred CCcchhhhHhhhccCCCCHHHHHHHHHHHh---hhcCC-CeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEecccc
Q psy11993 473 KHGGREMVQLFEKGYGKDPAEIAFRAISHA---RDMHI-DVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALV 548 (630)
Q Consensus 473 ~~tv~env~l~~~~~~~d~~~ia~~ai~~a---~~~~~-D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~ 548 (630)
..|+.+|+.|.....|.+.++...++.+.+ ...+| +..+-.+||+|+|+..|+|+|+ ++| .||+.|||.+
T Consensus 120 hrtVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp~eLSGGMqQRVGLARAla-----~~~-~IlLMDEaFS 193 (386)
T COG4175 120 HRTVLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYPNELSGGMQQRVGLARALA-----NDP-DILLMDEAFS 193 (386)
T ss_pred chhHhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcCcccccchHHHHHHHHHHHc-----cCC-CEEEecCchh
Confidence 899999999987777766655544454444 44455 3446678999999999999999 899 5667999999
Q ss_pred CccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcc-cCCcCccHHHHHHHHHHhCCcEEEEecCCCC
Q psy11993 549 GNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTK-FDTIDDKVGAAISMTYITGQPIVFVGTGQTY 613 (630)
Q Consensus 549 g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK-~D~~~~~~G~~ls~~~~~g~PI~fvg~Gq~v 613 (630)
.+|.+-.... ...+.++.. ...-+.+.+|+ +||+ -+.|.-+.++.. --|.-+||+|.+
T Consensus 194 ALDPLIR~~m-QdeLl~Lq~---~l~KTIvFitHDLdEA-lriG~rIaimkd--G~ivQ~Gtp~eI 252 (386)
T COG4175 194 ALDPLIRTEM-QDELLELQA---KLKKTIVFITHDLDEA-LRIGDRIAIMKD--GEIVQVGTPEEI 252 (386)
T ss_pred hcChHHHHHH-HHHHHHHHH---HhCCeEEEEecCHHHH-HhccceEEEecC--CeEEEeCCHHHH
Confidence 9998743322 222222221 22466778887 8886 666665555442 356667777654
No 47
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.69 E-value=3.3e-17 Score=166.81 Aligned_cols=169 Identities=22% Similarity=0.227 Sum_probs=125.6
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccCC---CcC
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHP---AAK 473 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~---~~~ 473 (630)
.+|++|+|.+.+| ++++|+||||+||||+++.|.++++|..|+|.+.+...... +-+....+++|... -..
T Consensus 18 ~vl~~i~l~v~~G--~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~----~~~~~IgYVPQ~~~~d~~fP 91 (254)
T COG1121 18 PVLEDISLSVEKG--EITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKR----RKRLRIGYVPQKSSVDRSFP 91 (254)
T ss_pred eeeeccEEEEcCC--cEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEcccccccc----ccCCeEEEcCcccccCCCCC
Confidence 4899999999999 99999999999999999999999999999999988765110 00123444554221 234
Q ss_pred CcchhhhHhhhcc-------CCCCHHHHHHHHHHHhhhcCC-CeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEec
Q psy11993 474 HGGREMVQLFEKG-------YGKDPAEIAFRAISHARDMHI-DVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGE 545 (630)
Q Consensus 474 ~tv~env~l~~~~-------~~~d~~~ia~~ai~~a~~~~~-D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E 545 (630)
.||.+.|.+.... +.....+.+.++++.....++ +.-+-.+|||++|+.-|+|+|+ .+|+ +|++||
T Consensus 92 ~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~-----~~p~-lllLDE 165 (254)
T COG1121 92 ITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALA-----QNPD-LLLLDE 165 (254)
T ss_pred cCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhc-----cCCC-EEEecC
Confidence 7899888775221 122234566778877776665 4456778999999999999999 8895 566999
Q ss_pred cccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 546 ALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 546 ~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
|++|.|...+. .|.+.+.++.. .+.+.+++|+
T Consensus 166 P~~gvD~~~~~-~i~~lL~~l~~----eg~tIl~vtH 197 (254)
T COG1121 166 PFTGVDVAGQK-EIYDLLKELRQ----EGKTVLMVTH 197 (254)
T ss_pred CcccCCHHHHH-HHHHHHHHHHH----CCCEEEEEeC
Confidence 99999988775 34455665543 2678888887
No 48
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.69 E-value=1.4e-16 Score=158.63 Aligned_cols=172 Identities=20% Similarity=0.137 Sum_probs=122.0
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccC--CCcCC
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLH--PAAKH 474 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~--~~~~~ 474 (630)
.+|++++|.+.+| ++++|+||||+||||+++.|++.+.+..|+|.+.+.+..... ....+....++.+.. .++.+
T Consensus 15 ~il~~vs~~i~~G--~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~~i~~~~q~~~~~~~~~ 91 (211)
T cd03225 15 PALDDISLTIKKG--EFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLS-LKELRRKVGLVFQNPDDQFFGP 91 (211)
T ss_pred eeecceEEEEcCC--cEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCC-HHHHHhhceEEecChhhhcCCC
Confidence 4789999999999 999999999999999999999999999999999887764322 234455555666543 24568
Q ss_pred cchhhhHhhhccCCCCHHH---HHHHHHHHhhhcC-CCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCc
Q psy11993 475 GGREMVQLFEKGYGKDPAE---IAFRAISHARDMH-IDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGN 550 (630)
Q Consensus 475 tv~env~l~~~~~~~d~~~---ia~~ai~~a~~~~-~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~ 550 (630)
|+.+|+.+....++.+... .+.++++.+.... .+..+...|||++++..++++|. .+| .++++|||+.|+
T Consensus 92 t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~-----~~p-~llllDEPt~~L 165 (211)
T cd03225 92 TVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLA-----MDP-DILLLDEPTAGL 165 (211)
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHh-----cCC-CEEEEcCCcccC
Confidence 9999997643322222222 2333333332221 23446678999999999999999 788 566699999999
Q ss_pred cHHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 551 EAVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 551 Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
|...+. .+.+.+.++.. .+.+.+++|+
T Consensus 166 D~~~~~-~~~~~l~~~~~----~~~tvi~~sH 192 (211)
T cd03225 166 DPAGRR-ELLELLKKLKA----EGKTIIIVTH 192 (211)
T ss_pred CHHHHH-HHHHHHHHHHH----cCCEEEEEeC
Confidence 987653 44555655543 1467788887
No 49
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.69 E-value=6.3e-17 Score=162.09 Aligned_cols=204 Identities=17% Similarity=0.137 Sum_probs=145.5
Q ss_pred HHHHcCCCcchhhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHH-HHhh
Q psy11993 386 LVQILSPKRRVDILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRT-HVRH 464 (630)
Q Consensus 386 L~~il~~~~~~~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~-~~~~ 464 (630)
|++-++ ...++++++|++.+| ++++||||||+||||++++|+++++|++|+|.+.+.|+-+..+.+..+. .++-
T Consensus 10 l~k~FG---Gl~Al~~Vsl~v~~G--ei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~Gi~RT 84 (250)
T COG0411 10 LSKRFG---GLTAVNDVSLEVRPG--EIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLGIART 84 (250)
T ss_pred ceeecC---CEEEEeceeEEEcCC--eEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhccceee
Confidence 444444 356889999999999 9999999999999999999999999999999999999988777654333 2344
Q ss_pred hcccCCCcCCcchhhhHhhhccC------------CCCHHHHHHHHHHHhhhcCC----CeeeeccccchhchHHHHHHH
Q psy11993 465 LCSLHPAAKHGGREMVQLFEKGY------------GKDPAEIAFRAISHARDMHI----DVVLIDTAGRMQDNEPLMRAL 528 (630)
Q Consensus 465 l~~~~~~~~~tv~env~l~~~~~------------~~d~~~ia~~ai~~a~~~~~----D~vlIDTaGr~~~~~~L~~aL 528 (630)
++....++.+|+.+||.+....+ ..+..+...+|.+.++.-++ +..--+.|++.++...++++|
T Consensus 85 FQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~LsyG~qR~LEIArAL 164 (250)
T COG0411 85 FQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAGNLSYGQQRRLEIARAL 164 (250)
T ss_pred cccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhhcCChhHhHHHHHHHHH
Confidence 44455588999999998864322 12233444444444444333 344567789999999999999
Q ss_pred HhhhhhcCCCeEEEEeccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcccCCcCccHHHHHHHHHHhCCcEEEEe
Q psy11993 529 AKLVKVNQPDLLLFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVG 608 (630)
Q Consensus 529 ~kl~~~~~Pd~VLlV~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK~D~~~~~~G~~ls~~~~~g~PI~fvg 608 (630)
+ .+| .+|++|||.+|....+. ..+.+.+++... ..+++.+++-+ ....+.+++. -|..+-
T Consensus 165 a-----~~P-~lLLLDEPaAGln~~e~-~~l~~~i~~i~~---~~g~tillIEH------dM~~Vm~l~d----ri~Vl~ 224 (250)
T COG0411 165 A-----TQP-KLLLLDEPAAGLNPEET-EELAELIRELRD---RGGVTILLIEH------DMKLVMGLAD----RIVVLN 224 (250)
T ss_pred h-----cCC-CEEEecCccCCCCHHHH-HHHHHHHHHHHh---cCCcEEEEEEe------ccHHHhhhcc----EEEecc
Confidence 9 999 66779999999987654 334445554442 12477777765 2444555555 477788
Q ss_pred cCCCCc
Q psy11993 609 TGQTYT 614 (630)
Q Consensus 609 ~Gq~v~ 614 (630)
.||.+.
T Consensus 225 ~G~~IA 230 (250)
T COG0411 225 YGEVIA 230 (250)
T ss_pred CCcCcc
Confidence 888764
No 50
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=99.69 E-value=1.3e-16 Score=159.24 Aligned_cols=173 Identities=21% Similarity=0.140 Sum_probs=122.4
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccH--HHHHHHHHhhhcccCC-CcC
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGA--VEQLRTHVRHLCSLHP-AAK 473 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga--~eQLr~~~~~l~~~~~-~~~ 473 (630)
.+|++++|.+.+| ++++|+||||+||||+++.|++++.+..|+|.+.+.|+.+... ..+++....++.+... ++.
T Consensus 16 ~il~~is~~i~~G--~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 93 (214)
T TIGR02673 16 AALHDVSLHIRKG--EFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRRRIGVVFQDFRLLPD 93 (214)
T ss_pred eeecceeEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhheEEEecChhhccC
Confidence 4789999999999 9999999999999999999999999999999999887754332 2233444455554333 456
Q ss_pred CcchhhhHhhhccCCCCHH---HHHHHHHHHhhhcC-CCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccC
Q psy11993 474 HGGREMVQLFEKGYGKDPA---EIAFRAISHARDMH-IDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVG 549 (630)
Q Consensus 474 ~tv~env~l~~~~~~~d~~---~ia~~ai~~a~~~~-~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g 549 (630)
+|+.+|+.+.....+..+. ..+.++++.+.... .+..+-..|||++++..++++|. .+| .++++|||+.|
T Consensus 94 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~-----~~p-~lllLDEPt~~ 167 (214)
T TIGR02673 94 RTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQRVAIARAIV-----NSP-PLLLADEPTGN 167 (214)
T ss_pred CcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHh-----CCC-CEEEEeCCccc
Confidence 8999999775432222222 22333444333221 23345678999999999999999 788 56669999999
Q ss_pred ccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 550 NEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 550 ~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
+|...+. .+.+.+.++.. .+.+.+++|+
T Consensus 168 LD~~~~~-~l~~~l~~~~~----~~~tii~~tH 195 (214)
T TIGR02673 168 LDPDLSE-RILDLLKRLNK----RGTTVIVATH 195 (214)
T ss_pred CCHHHHH-HHHHHHHHHHH----cCCEEEEEeC
Confidence 9987653 44555655532 1467788887
No 51
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=99.68 E-value=1.3e-16 Score=161.28 Aligned_cols=194 Identities=16% Similarity=0.149 Sum_probs=128.7
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccCC-CcCCc
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHP-AAKHG 475 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~-~~~~t 475 (630)
.+|++++|.+.+| ++++|+|||||||||+++.|++.+.+..|+|.+.+.+..+.......+....++.+... ++.+|
T Consensus 14 ~~l~~vs~~i~~G--e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 91 (232)
T cd03218 14 KVVNGVSLSVKQG--EIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIGYLPQEASIFRKLT 91 (232)
T ss_pred EeeccceeEecCC--cEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccEEEecCCccccccCc
Confidence 4789999999999 99999999999999999999999999999999988776443332222233444444332 45579
Q ss_pred chhhhHhhhccCCCCHHHH---HHHHHHHhhhcC-CCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCcc
Q psy11993 476 GREMVQLFEKGYGKDPAEI---AFRAISHARDMH-IDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNE 551 (630)
Q Consensus 476 v~env~l~~~~~~~d~~~i---a~~ai~~a~~~~-~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~D 551 (630)
+.+|+.+....++...... +..+++.+.... .+..+-..||+++++..++++|. .+| .+|++|||+.|+|
T Consensus 92 v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~-----~~p-~llllDEPt~~LD 165 (232)
T cd03218 92 VEENILAVLEIRGLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALA-----TNP-KFLLLDEPFAGVD 165 (232)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHh-----cCC-CEEEecCCcccCC
Confidence 9999987543233222222 223333322211 13335678999999999999999 788 5666999999999
Q ss_pred HHHHHHHHHHHHhhcccCCCCCCeeEEEEcccCCcCccHHHHHHHHHHhCCcEEEEecCCCC
Q psy11993 552 AVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGTGQTY 613 (630)
Q Consensus 552 av~ql~~f~~~l~~~~~~~~~~~i~gIIlTK~D~~~~~~G~~ls~~~~~g~PI~fvg~Gq~v 613 (630)
...+. .+.+.+.++.. .+.+.|++|+- ...+.. ..--|..+..|+-+
T Consensus 166 ~~~~~-~~~~~l~~~~~----~~~tii~~sH~------~~~~~~----~~d~i~~l~~G~i~ 212 (232)
T cd03218 166 PIAVQ-DIQKIIKILKD----RGIGVLITDHN------VRETLS----ITDRAYIIYEGKVL 212 (232)
T ss_pred HHHHH-HHHHHHHHHHH----CCCEEEEEeCC------HHHHHH----hCCEEEEEECCeEE
Confidence 87653 44555555532 24567777761 111222 22356667667643
No 52
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=99.68 E-value=1.3e-16 Score=168.14 Aligned_cols=170 Identities=19% Similarity=0.211 Sum_probs=127.0
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccCC-CcCCc
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHP-AAKHG 475 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~-~~~~t 475 (630)
.+|++++|.+.+| ++++|+||||+||||++++|++.+.++.|+|.+.+.+..+.. ..++....++.+... ++.+|
T Consensus 16 ~~l~~is~~i~~G--ei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~~~--~~~~~~ig~~~q~~~l~~~~t 91 (301)
T TIGR03522 16 NALDEVSFEAQKG--RIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNP--KEVQRNIGYLPEHNPLYLDMY 91 (301)
T ss_pred EEEEEeEEEEeCC--eEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCh--HHHHhceEEecCCCCCCCCCc
Confidence 4899999999999 999999999999999999999999999999999998875432 244555666665433 56789
Q ss_pred chhhhHhhhccCCCCHH---HHHHHHHHHhhhcC-CCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCcc
Q psy11993 476 GREMVQLFEKGYGKDPA---EIAFRAISHARDMH-IDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNE 551 (630)
Q Consensus 476 v~env~l~~~~~~~d~~---~ia~~ai~~a~~~~-~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~D 551 (630)
+.+|+.++...++.... ..+.++++.+.... .+..+-..||+++++..++++|. .+| .++++|||+.|+|
T Consensus 92 v~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~-----~~p-~lliLDEPt~gLD 165 (301)
T TIGR03522 92 VREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQALI-----HDP-KVLILDEPTTGLD 165 (301)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCchhhCCHHHHHHHHHHHHHh-----cCC-CEEEEcCCcccCC
Confidence 99999887665554332 22334444433322 24556788999999999999999 888 5677999999999
Q ss_pred HHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 552 AVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 552 av~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
...+ ..+.+.+..+.. +.+.++.|+
T Consensus 166 ~~~~-~~l~~~l~~~~~-----~~tiii~sH 190 (301)
T TIGR03522 166 PNQL-VEIRNVIKNIGK-----DKTIILSTH 190 (301)
T ss_pred HHHH-HHHHHHHHHhcC-----CCEEEEEcC
Confidence 8765 455556666542 356677776
No 53
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=99.68 E-value=9.4e-17 Score=172.01 Aligned_cols=175 Identities=15% Similarity=0.134 Sum_probs=125.6
Q ss_pred hhhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHH--HHHHHHhhhcccCC-Cc
Q psy11993 396 VDILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVE--QLRTHVRHLCSLHP-AA 472 (630)
Q Consensus 396 ~~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~e--QLr~~~~~l~~~~~-~~ 472 (630)
..+|++++|.+.+| ++++|+|||||||||++++|++++.++.|+|.+.+.|+.+....+ .++....++.+.+. ++
T Consensus 18 ~~~L~~vsl~i~~G--ei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r~~Ig~v~Q~~~l~~ 95 (343)
T TIGR02314 18 IQALNNVSLHVPAG--QIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKARRQIGMIFQHFNLLS 95 (343)
T ss_pred eEEEeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHhcCEEEEECCccccc
Confidence 35899999999999 999999999999999999999999999999999999886543321 22334444444333 55
Q ss_pred CCcchhhhHhhhccCCCCHHHHHHHHHHHhhhcCC----CeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEecccc
Q psy11993 473 KHGGREMVQLFEKGYGKDPAEIAFRAISHARDMHI----DVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALV 548 (630)
Q Consensus 473 ~~tv~env~l~~~~~~~d~~~ia~~ai~~a~~~~~----D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~ 548 (630)
.+|+.+|+.+.....+.+..+...++.+.++..++ |..+-..|||++++..++++|+ .+| .+|++|||++
T Consensus 96 ~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~~~LSgGqkQRV~IARAL~-----~~P-~iLLlDEPts 169 (343)
T TIGR02314 96 SRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYPSNLSGGQKQRVAIARALA-----SNP-KVLLCDEATS 169 (343)
T ss_pred cCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHH-----hCC-CEEEEeCCcc
Confidence 68999999875443333333333333333333332 4456778999999999999999 888 5667999999
Q ss_pred CccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 549 GNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 549 g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
++|...+. .+.+.+.++.. ..+++.|++|+
T Consensus 170 ~LD~~t~~-~i~~lL~~l~~---~~g~tiiliTH 199 (343)
T TIGR02314 170 ALDPATTQ-SILELLKEINR---RLGLTILLITH 199 (343)
T ss_pred cCCHHHHH-HHHHHHHHHHH---hcCCEEEEEeC
Confidence 99987654 33344554432 12578888887
No 54
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=99.68 E-value=1.4e-16 Score=157.85 Aligned_cols=173 Identities=18% Similarity=0.108 Sum_probs=121.5
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccH---HHHHHHHHhhhcccCC-Cc
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGA---VEQLRTHVRHLCSLHP-AA 472 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga---~eQLr~~~~~l~~~~~-~~ 472 (630)
.+|++++|.+.+| ++++|+||||+||||+++.|++.+.+..|+|.+.+.++.+... .+..+....++.+... ++
T Consensus 12 ~~l~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 89 (206)
T TIGR03608 12 IILDDLNLTIEKG--KMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREKLGYLFQNFALIE 89 (206)
T ss_pred EEEeceEEEEeCC--cEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhCeeEEecchhhcc
Confidence 4789999999999 9999999999999999999999999999999999887543221 2223333444444333 45
Q ss_pred CCcchhhhHhhhccCCCCHHH---HHHHHHHHhhhcC-CCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEecccc
Q psy11993 473 KHGGREMVQLFEKGYGKDPAE---IAFRAISHARDMH-IDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALV 548 (630)
Q Consensus 473 ~~tv~env~l~~~~~~~d~~~---ia~~ai~~a~~~~-~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~ 548 (630)
.+|+.+|+.+.....+..... .+.++++.+.... .+..+...||+++++..++++|. .+| .++++|||+.
T Consensus 90 ~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qr~~laral~-----~~p-~llllDEPt~ 163 (206)
T TIGR03608 90 NETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLKQKIYELSGGEQQRVALARAIL-----KDP-PLILADEPTG 163 (206)
T ss_pred CCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhhhcCChhhCCHHHHHHHHHHHHHH-----cCC-CEEEEeCCcC
Confidence 689999998754322222222 2233343333221 24556788999999999999999 788 5666999999
Q ss_pred CccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 549 GNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 549 g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
|+|...+ ..+.+.+.++.. .+.+.+++|+
T Consensus 164 ~LD~~~~-~~l~~~l~~~~~----~~~tii~~sh 192 (206)
T TIGR03608 164 SLDPKNR-DEVLDLLLELND----EGKTIIIVTH 192 (206)
T ss_pred CCCHHHH-HHHHHHHHHHHh----cCCEEEEEeC
Confidence 9998765 455666665542 1456677776
No 55
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=99.68 E-value=4e-17 Score=158.72 Aligned_cols=203 Identities=17% Similarity=0.227 Sum_probs=144.8
Q ss_pred HHHHHHcCCCcchhhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHh
Q psy11993 384 DALVQILSPKRRVDILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVR 463 (630)
Q Consensus 384 ~~L~~il~~~~~~~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~ 463 (630)
+.|.+.|.. ..+++++++.+.+| ++++|+||||+||||+..++.++..++.|+|++.+.|+-...-....|.-..
T Consensus 8 ~~l~K~y~k---r~Vv~~Vsl~v~~G--EiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArlGig 82 (243)
T COG1137 8 ENLAKSYKK---RKVVNDVSLEVNSG--EIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARLGIG 82 (243)
T ss_pred hhhhHhhCC---eeeeeeeeEEEcCC--cEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhcCcc
Confidence 456666653 35788999999999 9999999999999999999999999999999999999977776666666667
Q ss_pred hhcccCC-CcCCcchhhhHhhhccCCCCHH--HHHHHHHHHhhhcCC----CeeeeccccchhchHHHHHHHHhhhhhcC
Q psy11993 464 HLCSLHP-AAKHGGREMVQLFEKGYGKDPA--EIAFRAISHARDMHI----DVVLIDTAGRMQDNEPLMRALAKLVKVNQ 536 (630)
Q Consensus 464 ~l~~~~~-~~~~tv~env~l~~~~~~~d~~--~ia~~ai~~a~~~~~----D~vlIDTaGr~~~~~~L~~aL~kl~~~~~ 536 (630)
+++|... +..+|+.+|+.........+.. +...++-..+..... +..-.-.||+..++..++|+|+ .+
T Consensus 83 YLpQE~SIFr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~~a~sLSGGERRR~EIARaLa-----~~ 157 (243)
T COG1137 83 YLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLRDSKAYSLSGGERRRVEIARALA-----AN 157 (243)
T ss_pred cccccchHhhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHHhcCcccccccchHHHHHHHHHHh-----cC
Confidence 7877655 6679999999877654444432 222222222332222 2234567999999999999999 89
Q ss_pred CCeEEEEeccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcccCCcCccHHHHHHHHHHhCCcEEEEecCCC
Q psy11993 537 PDLLLFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGTGQT 612 (630)
Q Consensus 537 Pd~VLlV~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK~D~~~~~~G~~ls~~~~~g~PI~fvg~Gq~ 612 (630)
|. .+++|||.+|.|.+... ...+.+..+. .++| ||++| |..+-..++++.. ..-+..||-
T Consensus 158 P~-fiLLDEPFAGVDPiaV~-dIq~iI~~L~----~rgi-GvLIT-----DHNVREtL~i~dR----aYIi~~G~v 217 (243)
T COG1137 158 PK-FILLDEPFAGVDPIAVI-DIQRIIKHLK----DRGI-GVLIT-----DHNVRETLDICDR----AYIISDGKV 217 (243)
T ss_pred CC-EEEecCCccCCCchhHH-HHHHHHHHHH----hCCc-eEEEc-----cccHHHHHhhhhe----EEEEecCeE
Confidence 95 55599999999976543 2222332222 2355 77887 4667777777774 444556654
No 56
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.68 E-value=7.5e-17 Score=165.79 Aligned_cols=187 Identities=19% Similarity=0.151 Sum_probs=136.2
Q ss_pred hhhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeec---ccCCccHHHHHHHHHhhhcccCC--
Q psy11993 396 VDILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAAC---DTFRAGAVEQLRTHVRHLCSLHP-- 470 (630)
Q Consensus 396 ~~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~---Dt~R~ga~eQLr~~~~~l~~~~~-- 470 (630)
..++++|++.++.| +.++++|||||||||+|++||++..|+.|+|.+.+. |..+ +....+.+|..++
T Consensus 15 ~~a~~di~l~i~~G--e~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~------~~~~~R~VGfvFQ~Y 86 (345)
T COG1118 15 FGALDDISLDIKSG--ELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSN------LAVRDRKVGFVFQHY 86 (345)
T ss_pred ccccccceeeecCC--cEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhc------cchhhcceeEEEech
Confidence 45777999999999 999999999999999999999999999999999998 7633 3444555665544
Q ss_pred --CcCCcchhhhHhhhccCC--CCHHHHHHHH---HHHhhhcCC-CeeeeccccchhchHHHHHHHHhhhhhcCCCeEEE
Q psy11993 471 --AAKHGGREMVQLFEKGYG--KDPAEIAFRA---ISHARDMHI-DVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLF 542 (630)
Q Consensus 471 --~~~~tv~env~l~~~~~~--~d~~~ia~~a---i~~a~~~~~-D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLl 542 (630)
++.||+.+||.|..+... .++..+..++ ++.....++ +...-+.||+++++..|+|+|+ ..| .+|+
T Consensus 87 ALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP~QLSGGQrQRVALARALA-----~eP-~vLL 160 (345)
T COG1118 87 ALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQRQRVALARALA-----VEP-KVLL 160 (345)
T ss_pred hhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCchhcChHHHHHHHHHHHhh-----cCC-CeEe
Confidence 788999999999764432 2333333333 444444444 4557899999999999999999 899 6777
Q ss_pred EeccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcccCCcCccHHHHHHHHHHhCCcEEEEecC
Q psy11993 543 VGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGTG 610 (630)
Q Consensus 543 V~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK~D~~~~~~G~~ls~~~~~g~PI~fvg~G 610 (630)
+|||..++|+.- .+.+.+-++++.. ..+++.+.+|+ |- -. ++...-.|..+..|
T Consensus 161 LDEPf~ALDa~v-r~~lr~wLr~~~~---~~~~ttvfVTH-D~-----ee----a~~ladrvvvl~~G 214 (345)
T COG1118 161 LDEPFGALDAKV-RKELRRWLRKLHD---RLGVTTVFVTH-DQ-----EE----ALELADRVVVLNQG 214 (345)
T ss_pred ecCCchhhhHHH-HHHHHHHHHHHHH---hhCceEEEEeC-CH-----HH----HHhhcceEEEecCC
Confidence 999999998643 2444555554433 23688899997 21 11 23333457777777
No 57
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.68 E-value=1.3e-16 Score=161.61 Aligned_cols=174 Identities=22% Similarity=0.199 Sum_probs=121.3
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccH--HHHHHHHHhhhcccCC-CcC
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGA--VEQLRTHVRHLCSLHP-AAK 473 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga--~eQLr~~~~~l~~~~~-~~~ 473 (630)
.+|++++|.+.+| ++++|+||||+||||+++.|++.+.+..|+|.+.+.+..+... ...++....++.+... ++.
T Consensus 14 ~~l~~vs~~i~~G--e~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 91 (235)
T cd03261 14 TVLKGVDLDVRRG--EILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRRMGMLFQSGALFDS 91 (235)
T ss_pred EEEeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhcceEEEccCcccCCC
Confidence 4789999999999 9999999999999999999999999999999998887644322 1233444455555433 456
Q ss_pred CcchhhhHhhhccC-CCCHHHH---HHHHHHHhhhcC-CCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEecccc
Q psy11993 474 HGGREMVQLFEKGY-GKDPAEI---AFRAISHARDMH-IDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALV 548 (630)
Q Consensus 474 ~tv~env~l~~~~~-~~d~~~i---a~~ai~~a~~~~-~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~ 548 (630)
+|+.+|+.+....+ +.+.... +.++++.+.... .+..+...|||++++..++++|. .+| .+|++|||+.
T Consensus 92 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ia~al~-----~~p-~llllDEPt~ 165 (235)
T cd03261 92 LTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARALA-----LDP-ELLLYDEPTA 165 (235)
T ss_pred CcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHh-----cCC-CEEEecCCcc
Confidence 89999997753322 2233222 233343333222 13445678999999999999999 788 5667999999
Q ss_pred CccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 549 GNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 549 g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
|+|...+. .+.+.+.++... .+.+.|++|+
T Consensus 166 ~LD~~~~~-~l~~~l~~~~~~---~~~tvi~vsH 195 (235)
T cd03261 166 GLDPIASG-VIDDLIRSLKKE---LGLTSIMVTH 195 (235)
T ss_pred cCCHHHHH-HHHHHHHHHHHh---cCcEEEEEec
Confidence 99987653 344455544321 2467788886
No 58
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=99.68 E-value=1.5e-16 Score=167.68 Aligned_cols=171 Identities=19% Similarity=0.176 Sum_probs=123.4
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccCC-CcCCc
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHP-AAKHG 475 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~-~~~~t 475 (630)
.+|++++|.+.+| ++++|+||||+||||+++.|++.+.+..|+|.+.+.+.... . ...+....++.+... ++.+|
T Consensus 18 ~~l~~vsl~i~~G--e~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-~-~~~~~~i~~v~q~~~~~~~~t 93 (303)
T TIGR01288 18 VVVNDLSFTIARG--ECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSR-A-RLARVAIGVVPQFDNLDPEFT 93 (303)
T ss_pred EEEcceeEEEcCC--cEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccc-H-HHHhhcEEEEeccccCCcCCc
Confidence 4899999999999 99999999999999999999999999999999998876332 1 233444555555433 45689
Q ss_pred chhhhHhhhccCCCCHHH---HHHHHHHHhhhcC-CCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCcc
Q psy11993 476 GREMVQLFEKGYGKDPAE---IAFRAISHARDMH-IDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNE 551 (630)
Q Consensus 476 v~env~l~~~~~~~d~~~---ia~~ai~~a~~~~-~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~D 551 (630)
+.+|+.++...++.+... .+..+++.+.... .+..+-..|||++++..++++|. .+| .+|++|||++|+|
T Consensus 94 v~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~~LSgG~~qrv~la~al~-----~~p-~lllLDEPt~gLD 167 (303)
T TIGR01288 94 VRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADVRVALLSGGMKRRLTLARALI-----NDP-QLLILDEPTTGLD 167 (303)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCchhhCCHHHHHHHHHHHHHh-----cCC-CEEEEeCCCcCCC
Confidence 999998765444433322 2223343333222 24456788999999999999999 788 5666999999999
Q ss_pred HHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 552 AVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 552 av~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
...+ ..+.+.+.++.. .+.+.+++|+
T Consensus 168 ~~~~-~~l~~~l~~~~~----~g~til~~sH 193 (303)
T TIGR01288 168 PHAR-HLIWERLRSLLA----RGKTILLTTH 193 (303)
T ss_pred HHHH-HHHHHHHHHHHh----CCCEEEEECC
Confidence 8765 345556665542 2566777776
No 59
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.68 E-value=1e-16 Score=160.02 Aligned_cols=207 Identities=13% Similarity=0.170 Sum_probs=147.7
Q ss_pred HHHHHcCCCcchhhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhh
Q psy11993 385 ALVQILSPKRRVDILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRH 464 (630)
Q Consensus 385 ~L~~il~~~~~~~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~ 464 (630)
.+++-++. ..+++|++|.+++| ++++|+||||+|||||+++|.+++.++.|+|.+.+.+..+ ..+...++
T Consensus 7 ~vtK~Fg~---k~av~~isf~v~~G--~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~-----~~~~rIGy 76 (300)
T COG4152 7 GVTKSFGD---KKAVDNISFEVPPG--EIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQ-----EIKNRIGY 76 (300)
T ss_pred cchhccCc---eeeecceeeeecCC--eEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhh-----hhhhhccc
Confidence 34455553 45788999999999 9999999999999999999999999999999999977622 22334555
Q ss_pred hcccCC-CcCCcchhhhHhhhccCCCCHHHHHHHHHHHhhhcC---CCe-eeeccccchhchHHHHHHHHhhhhhcCCCe
Q psy11993 465 LCSLHP-AAKHGGREMVQLFEKGYGKDPAEIAFRAISHARDMH---IDV-VLIDTAGRMQDNEPLMRALAKLVKVNQPDL 539 (630)
Q Consensus 465 l~~~~~-~~~~tv~env~l~~~~~~~d~~~ia~~ai~~a~~~~---~D~-vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~ 539 (630)
++.... ++.+|+.+-+.++....+....++..++-.+++..+ +.. .+-++|-++||...++.++. ++|++
T Consensus 77 LPEERGLy~k~tv~dql~yla~LkGm~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfisavi-----HePeL 151 (300)
T COG4152 77 LPEERGLYPKMTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVI-----HEPEL 151 (300)
T ss_pred ChhhhccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHHHHhccccccccchHHHhhhhhhHHHHHHHHHh-----cCCCE
Confidence 654332 778999999999998888888888777766555432 222 24567999999999999998 89965
Q ss_pred EEEEeccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcccCCcCc-----------cHHHHHHHHHHhCCcEEEEe
Q psy11993 540 LLFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTIDD-----------KVGAAISMTYITGQPIVFVG 608 (630)
Q Consensus 540 VLlV~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK~D~~~~-----------~~G~~ls~~~~~g~PI~fvg 608 (630)
++ +|||.+|+|.+++ +.+.+.+.++...+...-.+...++++.+.|+ -.|.+-++...+|.-..|+-
T Consensus 152 lI-LDEPFSGLDPVN~-elLk~~I~~lk~~GatIifSsH~Me~vEeLCD~llmL~kG~~V~~G~v~~ir~~~Gkk~~~ie 229 (300)
T COG4152 152 LI-LDEPFSGLDPVNV-ELLKDAIFELKEEGATIIFSSHRMEHVEELCDRLLMLKKGQTVLYGTVEDIRRSFGKKRLVIE 229 (300)
T ss_pred EE-ecCCccCCChhhH-HHHHHHHHHHHhcCCEEEEecchHHHHHHHhhhhheecCCceEEeccHHHHHHhcCCceEEEe
Confidence 55 8999999999985 45566666665543222222223333333322 23556666666666666665
No 60
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.68 E-value=1e-16 Score=159.09 Aligned_cols=168 Identities=18% Similarity=0.128 Sum_probs=121.5
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccC--CCcCC
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLH--PAAKH 474 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~--~~~~~ 474 (630)
.+|++++|.+.+| ++++|+|||||||||+++.|++.+.+..|+|.+.+.++.. ...+....++.+.. .+..+
T Consensus 14 ~~l~~v~~~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~----~~~~~~i~~~~q~~~~~~~~~ 87 (205)
T cd03226 14 EILDDLSLDLYAG--EIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKA----KERRKSIGYVMQDVDYQLFTD 87 (205)
T ss_pred ceeeeeeEEEcCC--CEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhh----HHhhcceEEEecChhhhhhhc
Confidence 4789999999999 9999999999999999999999999999999998877632 22333444555543 23457
Q ss_pred cchhhhHhhhccCCCCHHHHHHHHHHHhhhcC-CCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCccHH
Q psy11993 475 GGREMVQLFEKGYGKDPAEIAFRAISHARDMH-IDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAV 553 (630)
Q Consensus 475 tv~env~l~~~~~~~d~~~ia~~ai~~a~~~~-~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~Dav 553 (630)
|+.+|+.++...++.+ ...+.++++.+.... .+..+-..||+++++..++++|. .+| .++++|||+.|+|..
T Consensus 88 tv~e~l~~~~~~~~~~-~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~-----~~p-~llllDEPt~~LD~~ 160 (205)
T cd03226 88 SVREELLLGLKELDAG-NEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALL-----SGK-DLLIFDEPTSGLDYK 160 (205)
T ss_pred cHHHHHhhhhhhcCcc-HHHHHHHHHHcCCchhcCCCchhCCHHHHHHHHHHHHHH-----hCC-CEEEEeCCCccCCHH
Confidence 9999997754333222 223444555444332 24445678999999999999999 788 566799999999987
Q ss_pred HHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 554 DQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 554 ~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
.+ ..+.+.+.++.. .+.+.+++|+
T Consensus 161 ~~-~~l~~~l~~~~~----~~~tii~~sH 184 (205)
T cd03226 161 NM-ERVGELIRELAA----QGKAVIVITH 184 (205)
T ss_pred HH-HHHHHHHHHHHH----CCCEEEEEeC
Confidence 65 455666666542 2466778886
No 61
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=99.68 E-value=1.1e-16 Score=172.54 Aligned_cols=174 Identities=18% Similarity=0.170 Sum_probs=126.1
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHH--H-HHHHhhhcccCC-Cc
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQ--L-RTHVRHLCSLHP-AA 472 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQ--L-r~~~~~l~~~~~-~~ 472 (630)
.+|++++|.+.+| ++++|+|||||||||++++|++++.+..|+|.+.+.|+.+....+. + +....++.+... ++
T Consensus 7 ~~l~~vs~~i~~G--ei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~ 84 (363)
T TIGR01186 7 KGVNDADLAIAKG--EIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFP 84 (363)
T ss_pred eeEEeeEEEEcCC--CEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCC
Confidence 4789999999999 9999999999999999999999999999999999998876544322 1 334455554333 56
Q ss_pred CCcchhhhHhhhccCCCCHHHHHHHHHHHhhhcCC----CeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEecccc
Q psy11993 473 KHGGREMVQLFEKGYGKDPAEIAFRAISHARDMHI----DVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALV 548 (630)
Q Consensus 473 ~~tv~env~l~~~~~~~d~~~ia~~ai~~a~~~~~----D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~ 548 (630)
.+|+.+|+.+.....+.+..+...++.+.+...++ +..+...|||++++..++++|+ .+| .+|++|||+.
T Consensus 85 ~~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p~~LSGGq~QRV~lARAL~-----~~p-~iLLlDEP~s 158 (363)
T TIGR01186 85 HMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPDELSGGMQQRVGLARALA-----AEP-DILLMDEAFS 158 (363)
T ss_pred CCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCChhhCCHHHHHHHHHHHHHh-----cCC-CEEEEeCCcc
Confidence 68999999876544444443333333333333232 3446678999999999999999 888 5777999999
Q ss_pred CccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 549 GNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 549 g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
++|...... +.+.+.++.. ..+.+.|++|+
T Consensus 159 aLD~~~r~~-l~~~l~~l~~---~~~~Tii~vTH 188 (363)
T TIGR01186 159 ALDPLIRDS-MQDELKKLQA---TLQKTIVFITH 188 (363)
T ss_pred cCCHHHHHH-HHHHHHHHHH---hcCCEEEEEeC
Confidence 999887543 3344444432 12567788887
No 62
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=99.67 E-value=1.2e-15 Score=159.49 Aligned_cols=150 Identities=31% Similarity=0.413 Sum_probs=110.4
Q ss_pred chHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCccCCccchHHHHHHHHHHHHHHHcCCCcchhhhhhhhhhhccC
Q psy11993 330 DMKPILEKMKDHLIAKNVAADIAVKLCDSVALKLEGKVLGTFESVANTVKSTLTDALVQILSPKRRVDILRDALEAKKQG 409 (630)
Q Consensus 330 ~l~~~l~~l~~~Li~~~V~~~ia~~l~~~v~~~l~g~~~~~~~~~~~~v~~~l~~~L~~il~~~~~~~iL~~i~~~i~~g 409 (630)
...|.+..+++.|++.||+.+++++|++.+.... . ...+...+.+.|.+.+.... .. ..+ ..
T Consensus 131 ~~~~~l~~l~~~L~~~gv~~~la~~L~~~l~~~~------~----~~~~~~~~~~~l~~~l~~~~-~~----~~~-~~-- 192 (282)
T TIGR03499 131 QRDPEGAKLLERLLRAGVSPELARELLEKLPERA------D----AEDAWRWLREALEKMLPVKP-EE----DEI-LE-- 192 (282)
T ss_pred ccCHHHHHHHHHHHHCCCCHHHHHHHHHHhhccC------C----HHHHHHHHHHHHHHHhccCC-cc----ccc-cC--
Confidence 5678999999999999999999999999987521 1 12344556667776664211 10 011 12
Q ss_pred CCeEEEEEccCCCChHHHHHHHHHHHHhc-C-CeEEEeecccCCccHHHHHHHHHhhhcccCCCcCCcchhhhHhhhccC
Q psy11993 410 RPFVMAFCGVNGVGKSTNLAKICFWLIEN-N-LNVLIAACDTFRAGAVEQLRTHVRHLCSLHPAAKHGGREMVQLFEKGY 487 (630)
Q Consensus 410 ~p~vi~lvGpNGvGKTTllakLA~~l~~~-g-gkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~~~~~tv~env~l~~~~~ 487 (630)
++.+++|+||+|||||||+++||.++... + .+|.++++|+||+++++||+.|+..++.+.. .
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r~~a~eql~~~~~~~~~p~~-------------~--- 256 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYRIGAVEQLKTYAKILGVPVK-------------V--- 256 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccchhHHHHHHHHHHHhCCcee-------------c---
Confidence 34899999999999999999999998775 4 7999999999999999999999998874221 1
Q ss_pred CCCHHHHHHHHHHHhhhcCCCeeeecccc
Q psy11993 488 GKDPAEIAFRAISHARDMHIDVVLIDTAG 516 (630)
Q Consensus 488 ~~d~~~ia~~ai~~a~~~~~D~vlIDTaG 516 (630)
..++.+. .+++..+ .++|+|+|||+|
T Consensus 257 ~~~~~~l-~~~l~~~--~~~d~vliDt~G 282 (282)
T TIGR03499 257 ARDPKEL-RKALDRL--RDKDLILIDTAG 282 (282)
T ss_pred cCCHHHH-HHHHHHc--cCCCEEEEeCCC
Confidence 1233332 3445443 458999999997
No 63
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=99.67 E-value=2.1e-16 Score=158.16 Aligned_cols=174 Identities=18% Similarity=0.123 Sum_probs=121.2
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHH---HHHHHHhhhcccCC-Cc
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVE---QLRTHVRHLCSLHP-AA 472 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~e---QLr~~~~~l~~~~~-~~ 472 (630)
.+|++++|.+.+| ++++|+||||+||||+++.|++.+.+..|+|.+.+.+........ ..+....++.+... ++
T Consensus 18 ~il~~~s~~i~~G--~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 95 (218)
T cd03255 18 QALKGVSLSIEKG--EFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLP 95 (218)
T ss_pred eEEeeeEEEEcCC--CEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHHhhcEEEEeeccccCC
Confidence 4889999999999 999999999999999999999999999999999887764332211 12233444444333 45
Q ss_pred CCcchhhhHhhhccCCCCHH---HHHHHHHHHhhhcC-CCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEecccc
Q psy11993 473 KHGGREMVQLFEKGYGKDPA---EIAFRAISHARDMH-IDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALV 548 (630)
Q Consensus 473 ~~tv~env~l~~~~~~~d~~---~ia~~ai~~a~~~~-~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~ 548 (630)
.+|+.+|+.+....++.... ..+.++++.+.... .+..+...||+++++..++++|. .+| .+|++|||+.
T Consensus 96 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~-----~~p-~lllLDEP~~ 169 (218)
T cd03255 96 DLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARALA-----NDP-KIILADEPTG 169 (218)
T ss_pred CCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhcChhhcCHHHHHHHHHHHHHc-----cCC-CEEEEcCCcc
Confidence 67999999875433332222 12333343332221 23445678999999999999999 788 5666999999
Q ss_pred CccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 549 GNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 549 g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
|+|...+ ..+.+.+.++... .+.+.|++|+
T Consensus 170 ~LD~~~~-~~l~~~l~~~~~~---~~~tii~~sH 199 (218)
T cd03255 170 NLDSETG-KEVMELLRELNKE---AGTTIVVVTH 199 (218)
T ss_pred cCCHHHH-HHHHHHHHHHHHh---cCCeEEEEEC
Confidence 9998765 4455566555321 2467788887
No 64
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=99.67 E-value=2.2e-16 Score=158.17 Aligned_cols=170 Identities=16% Similarity=0.106 Sum_probs=121.4
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccCC-CcCCc
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHP-AAKHG 475 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~-~~~~t 475 (630)
.+|++++|.+.+| ++++|+||||+||||+++.|++++.+..|.|.+.+.++.+.. ..++....++.+... ++..|
T Consensus 16 ~il~~is~~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~--~~~~~~i~~v~q~~~~~~~~t 91 (220)
T cd03263 16 PAVDDLSLNVYKG--EIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDR--KAARQSLGYCPQFDALFDELT 91 (220)
T ss_pred eeecceEEEEcCC--cEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccch--HHHhhhEEEecCcCCccccCC
Confidence 4889999999999 999999999999999999999999999999999888764421 233444555554433 44689
Q ss_pred chhhhHhhhccCCCCHHH---HHHHHHHHhhhcC-CCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCcc
Q psy11993 476 GREMVQLFEKGYGKDPAE---IAFRAISHARDMH-IDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNE 551 (630)
Q Consensus 476 v~env~l~~~~~~~d~~~---ia~~ai~~a~~~~-~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~D 551 (630)
+.+|+.+....++..... .+.++++.+.... .+..+...||+++++..++++|. .+| .++++|||+.++|
T Consensus 92 v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~-----~~p-~llllDEP~~~LD 165 (220)
T cd03263 92 VREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALI-----GGP-SVLLLDEPTSGLD 165 (220)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhChhhhCCHHHHHHHHHHHHHh-----cCC-CEEEECCCCCCCC
Confidence 999998764433332222 2333343332221 23446678999999999999999 788 5666999999999
Q ss_pred HHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 552 AVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 552 av~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
...+ ..+.+.+.++.. ..+.+++|+
T Consensus 166 ~~~~-~~l~~~l~~~~~-----~~tii~~sH 190 (220)
T cd03263 166 PASR-RAIWDLILEVRK-----GRSIILTTH 190 (220)
T ss_pred HHHH-HHHHHHHHHHhc-----CCEEEEEcC
Confidence 8765 445556665542 356677776
No 65
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.67 E-value=1.9e-16 Score=165.85 Aligned_cols=174 Identities=16% Similarity=0.159 Sum_probs=125.9
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCcc-HHHHHHHHHhhhcccC--CCcC
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAG-AVEQLRTHVRHLCSLH--PAAK 473 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~g-a~eQLr~~~~~l~~~~--~~~~ 473 (630)
.+|++|+|.+.+| ++++|+||||+||||+++.|++++.++.|.|.+.+.++.... ....++....++.+.+ .+..
T Consensus 21 ~~l~~vs~~i~~G--e~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~ 98 (287)
T PRK13637 21 KALDNVNIEIEDG--EFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQLFE 98 (287)
T ss_pred ceeeeeEEEEcCC--CEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHHhhceEEEecCchhcccc
Confidence 4899999999999 999999999999999999999999999999999998874321 1123455556666543 2345
Q ss_pred CcchhhhHhhhccCCCCHHHH---HHHHHHHhhhc--C-CCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccc
Q psy11993 474 HGGREMVQLFEKGYGKDPAEI---AFRAISHARDM--H-IDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEAL 547 (630)
Q Consensus 474 ~tv~env~l~~~~~~~d~~~i---a~~ai~~a~~~--~-~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~ 547 (630)
+|+.+|+.+....++.++.+. +.++++..... . .+..+...|||++++..++++|+ .+| .+|++|||+
T Consensus 99 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~iAraL~-----~~P-~llllDEPt 172 (287)
T PRK13637 99 ETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVA-----MEP-KILILDEPT 172 (287)
T ss_pred ccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHHHHHHHHHHHH-----cCC-CEEEEECCc
Confidence 799999987544334444333 33344433332 1 24446778999999999999999 888 566799999
Q ss_pred cCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 548 VGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 548 ~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
.|+|...+. .+.+.+.++... .+.+.|++|+
T Consensus 173 ~gLD~~~~~-~l~~~l~~l~~~---~g~tvi~vtH 203 (287)
T PRK13637 173 AGLDPKGRD-EILNKIKELHKE---YNMTIILVSH 203 (287)
T ss_pred cCCCHHHHH-HHHHHHHHHHHh---cCCEEEEEeC
Confidence 999987654 455556555421 2567788886
No 66
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.67 E-value=1.9e-16 Score=160.99 Aligned_cols=197 Identities=19% Similarity=0.172 Sum_probs=147.7
Q ss_pred hhhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccC--CCcC
Q psy11993 396 VDILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLH--PAAK 473 (630)
Q Consensus 396 ~~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~--~~~~ 473 (630)
..+|+++++.+.+| +.++|+|+|||||||+++.|++++.|..|.|.+.+.++.......+++....++.+.+ ++..
T Consensus 17 ~~~l~~v~~~i~~G--e~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~vG~VfQnpd~q~~~ 94 (235)
T COG1122 17 KAALKDVSLEIEKG--ERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQKVGLVFQNPDDQLFG 94 (235)
T ss_pred ceeeeeeEEEECCC--CEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcceEEEEECccccccc
Confidence 46899999999999 9999999999999999999999999999999999988743223456676666666543 3667
Q ss_pred CcchhhhHhhhccCCCCHHHHHHHHHHHhhhcCC----CeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccC
Q psy11993 474 HGGREMVQLFEKGYGKDPAEIAFRAISHARDMHI----DVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVG 549 (630)
Q Consensus 474 ~tv~env~l~~~~~~~d~~~ia~~ai~~a~~~~~----D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g 549 (630)
.|+.+.+.+.....+....++..++.+.+...+. +.-+...|||+.++..++..|+ ++| .+|++|||++|
T Consensus 95 ~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkqRvaIA~vLa-----~~P-~iliLDEPta~ 168 (235)
T COG1122 95 PTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVLA-----MGP-EILLLDEPTAG 168 (235)
T ss_pred CcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCccccCCcceeeHHhhHHHH-----cCC-CEEEEcCCCCC
Confidence 8999999998888887776665555444444343 4557788999999999999999 999 56679999999
Q ss_pred ccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcccCCcCccHHHHHHHHHHhCCcEEEEecCCCCc
Q psy11993 550 NEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGTGQTYT 614 (630)
Q Consensus 550 ~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK~D~~~~~~G~~ls~~~~~g~PI~fvg~Gq~v~ 614 (630)
+|..... .+.+.+.++.. ..+.+.|++|+ | . ..+..+.--+..+..|+.+.
T Consensus 169 LD~~~~~-~l~~~l~~L~~---~~~~tii~~tH-d-----~----~~~~~~ad~v~vl~~G~i~~ 219 (235)
T COG1122 169 LDPKGRR-ELLELLKKLKE---EGGKTIIIVTH-D-----L----ELVLEYADRVVVLDDGKILA 219 (235)
T ss_pred CCHHHHH-HHHHHHHHHHh---cCCCeEEEEeC-c-----H----HHHHhhCCEEEEEECCEEee
Confidence 9987653 33445555543 23578899997 1 1 22233344678888888754
No 67
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.67 E-value=2.2e-16 Score=158.49 Aligned_cols=193 Identities=17% Similarity=0.227 Sum_probs=131.2
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccCC-CcCCc
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHP-AAKHG 475 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~-~~~~t 475 (630)
.+|++++|.+.+| ++++|+||||+||||+++.|++++.+..|+|.+.+.+..... ..++....++.+... ++.+|
T Consensus 14 ~il~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~--~~~~~~i~~~~q~~~~~~~~t 89 (220)
T cd03265 14 EAVRGVSFRVRRG--EIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREP--REVRRRIGIVFQDLSVDDELT 89 (220)
T ss_pred EeeeceeEEECCC--CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcCh--HHHhhcEEEecCCccccccCc
Confidence 4789999999999 999999999999999999999999999999999887764321 233444455554433 45689
Q ss_pred chhhhHhhhccCCCCHHH---HHHHHHHHhhhcC-CCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCcc
Q psy11993 476 GREMVQLFEKGYGKDPAE---IAFRAISHARDMH-IDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNE 551 (630)
Q Consensus 476 v~env~l~~~~~~~d~~~---ia~~ai~~a~~~~-~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~D 551 (630)
+.+|+.+....++.+... .+.++++.+.... .+..+-..|||++++..++++|. .+| .++++|||+.++|
T Consensus 90 v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~la~al~-----~~p-~llllDEPt~~LD 163 (220)
T cd03265 90 GWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLV-----HRP-EVLFLDEPTIGLD 163 (220)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHh-----cCC-CEEEEcCCccCCC
Confidence 999997754333333322 2333343333221 24446678999999999999999 888 5666999999999
Q ss_pred HHHHHHHHHHHHhhcccCCCCCCeeEEEEcccCCcCccHHHHHHHHHHhCCcEEEEecCCCC
Q psy11993 552 AVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGTGQTY 613 (630)
Q Consensus 552 av~ql~~f~~~l~~~~~~~~~~~i~gIIlTK~D~~~~~~G~~ls~~~~~g~PI~fvg~Gq~v 613 (630)
...+ ..+.+.+.++... .+.+.+++|+ | ...+ ....-.|.++..|+-+
T Consensus 164 ~~~~-~~l~~~l~~~~~~---~~~tvi~~tH-~-----~~~~----~~~~d~i~~l~~G~i~ 211 (220)
T cd03265 164 PQTR-AHVWEYIEKLKEE---FGMTILLTTH-Y-----MEEA----EQLCDRVAIIDHGRII 211 (220)
T ss_pred HHHH-HHHHHHHHHHHHh---cCCEEEEEeC-C-----HHHH----HHhCCEEEEEeCCEEE
Confidence 8764 4455556555421 2466778876 1 1112 2222357777777643
No 68
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=99.67 E-value=2.8e-16 Score=156.67 Aligned_cols=173 Identities=18% Similarity=0.109 Sum_probs=121.4
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHH--HHHHHHHhhhcccCC-CcC
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAV--EQLRTHVRHLCSLHP-AAK 473 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~--eQLr~~~~~l~~~~~-~~~ 473 (630)
.+|++++|.+.+| ++++|+||||+||||+++.|++++.+..|+|.+.+.++...... ...+....++.+... ++.
T Consensus 15 ~~l~~~sl~i~~G--~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~ 92 (214)
T cd03292 15 AALDGINISISAG--EFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRKIGVVFQDFRLLPD 92 (214)
T ss_pred eeeeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHHheEEEecCchhccC
Confidence 4789999999999 99999999999999999999999999999999988876543321 123344455554433 455
Q ss_pred CcchhhhHhhhccCCCCHHH---HHHHHHHHhhhcC-CCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccC
Q psy11993 474 HGGREMVQLFEKGYGKDPAE---IAFRAISHARDMH-IDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVG 549 (630)
Q Consensus 474 ~tv~env~l~~~~~~~d~~~---ia~~ai~~a~~~~-~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g 549 (630)
+|+.+|+.+....++..... .+.++++.+.... .+..+...||+++++..++++|. .+| .++++|||+++
T Consensus 93 ~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~-----~~p-~llllDEPt~~ 166 (214)
T cd03292 93 RNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARAIV-----NSP-TILIADEPTGN 166 (214)
T ss_pred CcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHH-----cCC-CEEEEeCCCCc
Confidence 89999998754322222222 2233333322211 13345678999999999999999 788 56669999999
Q ss_pred ccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 550 NEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 550 ~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
+|...+ ..+.+.+.++.. .+.+.|++|+
T Consensus 167 LD~~~~-~~~~~~l~~~~~----~~~tiiivtH 194 (214)
T cd03292 167 LDPDTT-WEIMNLLKKINK----AGTTVVVATH 194 (214)
T ss_pred CCHHHH-HHHHHHHHHHHH----cCCEEEEEeC
Confidence 998765 345556665532 1467788887
No 69
>PRK10908 cell division protein FtsE; Provisional
Probab=99.67 E-value=2.8e-16 Score=157.93 Aligned_cols=173 Identities=17% Similarity=0.134 Sum_probs=121.8
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHH--HHHHHHHhhhcccCC-CcC
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAV--EQLRTHVRHLCSLHP-AAK 473 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~--eQLr~~~~~l~~~~~-~~~ 473 (630)
.+|++++|.+.+| ++++|+||||+||||+++.|++++.+..|+|.+.+.++.+.... ..++....++.+... ++.
T Consensus 16 ~~l~~vsl~i~~G--e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~~~q~~~~~~~ 93 (222)
T PRK10908 16 QALQGVTFHMRPG--EMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQIGMIFQDHHLLMD 93 (222)
T ss_pred eEEeeeeEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHhheEEEecCcccccc
Confidence 4789999999999 99999999999999999999999999999999988776443222 123444455554433 456
Q ss_pred CcchhhhHhhhccCCCCHHHH---HHHHHHHhhhcC-CCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccC
Q psy11993 474 HGGREMVQLFEKGYGKDPAEI---AFRAISHARDMH-IDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVG 549 (630)
Q Consensus 474 ~tv~env~l~~~~~~~d~~~i---a~~ai~~a~~~~-~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g 549 (630)
+|+.+|+.+.....+.+.... +.++++.+.... .+..+...||+++++..++++|. .+| .++++|||+.+
T Consensus 94 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~-----~~p-~llllDEPt~~ 167 (222)
T PRK10908 94 RTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVV-----NKP-AVLLADEPTGN 167 (222)
T ss_pred ccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCchhCCHHHHHHHHHHHHHH-----cCC-CEEEEeCCCCc
Confidence 899999977543333333322 223333332211 23446678999999999999999 788 56669999999
Q ss_pred ccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 550 NEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 550 ~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
+|...+ ..+.+.+.++.. .+.+.+++|+
T Consensus 168 LD~~~~-~~l~~~l~~~~~----~~~tiii~sH 195 (222)
T PRK10908 168 LDDALS-EGILRLFEEFNR----VGVTVLMATH 195 (222)
T ss_pred CCHHHH-HHHHHHHHHHHH----CCCEEEEEeC
Confidence 998765 345556665532 2467788887
No 70
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.67 E-value=2.4e-16 Score=163.95 Aligned_cols=173 Identities=17% Similarity=0.074 Sum_probs=123.7
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccCC--CcCC
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHP--AAKH 474 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~--~~~~ 474 (630)
.+|++++|.+.+| ++++|+||||+||||+++.|++.+.+..|+|.+.+.+..+......++....++.+.+. +...
T Consensus 16 ~~l~~vsl~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~ 93 (274)
T PRK13644 16 PALENINLVIKKG--EYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLVGIVFQNPETQFVGR 93 (274)
T ss_pred ceeeeeEEEEeCC--CEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhheEEEEEChhhhcccc
Confidence 4899999999999 99999999999999999999999999999999998876443222344555555555432 4457
Q ss_pred cchhhhHhhhccCCCCHHHH---HHHHHHHhhhcC-CCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCc
Q psy11993 475 GGREMVQLFEKGYGKDPAEI---AFRAISHARDMH-IDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGN 550 (630)
Q Consensus 475 tv~env~l~~~~~~~d~~~i---a~~ai~~a~~~~-~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~ 550 (630)
|+.+|+.+....++.++... +.++++.+.... .+..+-+.||+++++..++++|. .+| .++++|||+.|+
T Consensus 94 tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~-----~~p-~lllLDEPt~gL 167 (274)
T PRK13644 94 TVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILT-----MEP-ECLIFDEVTSML 167 (274)
T ss_pred hHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCcccCCHHHHHHHHHHHHHH-----cCC-CEEEEeCCcccC
Confidence 99999976543333333332 223333332221 24456788999999999999999 888 566699999999
Q ss_pred cHHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 551 EAVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 551 Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
|...+. .+.+.+.++.. .+.+.+++|+
T Consensus 168 D~~~~~-~l~~~l~~l~~----~g~til~~tH 194 (274)
T PRK13644 168 DPDSGI-AVLERIKKLHE----KGKTIVYITH 194 (274)
T ss_pred CHHHHH-HHHHHHHHHHh----CCCEEEEEec
Confidence 987653 45555655532 2567777776
No 71
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=99.67 E-value=1.8e-16 Score=158.96 Aligned_cols=194 Identities=16% Similarity=0.075 Sum_probs=132.0
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccCC-CcCCc
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHP-AAKHG 475 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~-~~~~t 475 (630)
.+|++++|.+.+| ++++|+|||||||||+++.|++.+.++.|+|.+.+.+..+....+..+....++.+... ++.+|
T Consensus 14 ~~l~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 91 (222)
T cd03224 14 QILFGVSLTVPEG--EIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIGYVPEGRRIFPELT 91 (222)
T ss_pred eEeeeeeEEEcCC--eEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCeEEeccccccCCCCc
Confidence 4789999999999 99999999999999999999999999999999998876544332222334455554433 55679
Q ss_pred chhhhHhhhccCCC-CHHHHHHHHHHHhh-h-cCCCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCccH
Q psy11993 476 GREMVQLFEKGYGK-DPAEIAFRAISHAR-D-MHIDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEA 552 (630)
Q Consensus 476 v~env~l~~~~~~~-d~~~ia~~ai~~a~-~-~~~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~Da 552 (630)
+.+|+.+....+.. .....+..+++.+. . ...+..+...||+++++..++++|. .+| .++++|||+.|+|.
T Consensus 92 ~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~laral~-----~~p-~llllDEPt~~LD~ 165 (222)
T cd03224 92 VEENLLLGAYARRRAKRKARLERVYELFPRLKERRKQLAGTLSGGEQQMLAIARALM-----SRP-KLLLLDEPSEGLAP 165 (222)
T ss_pred HHHHHHHHhhhcCchhHHHHHHHHHHHHHhhhhhhhCchhhCCHHHHHHHHHHHHHh-----cCC-CEEEECCCcccCCH
Confidence 99999775433321 11222333344331 1 1235556788999999999999999 788 56669999999998
Q ss_pred HHHHHHHHHHHhhcccCCCCCCeeEEEEcccCCcCccHHHHHHHHHHhCCcEEEEecCCCC
Q psy11993 553 VDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGTGQTY 613 (630)
Q Consensus 553 v~ql~~f~~~l~~~~~~~~~~~i~gIIlTK~D~~~~~~G~~ls~~~~~g~PI~fvg~Gq~v 613 (630)
..+ ..+.+.+.++.. .+.+.|++|+-- ..+.. ..-.|.++..|+-+
T Consensus 166 ~~~-~~l~~~l~~~~~----~~~tiii~sH~~------~~~~~----~~d~i~~l~~G~i~ 211 (222)
T cd03224 166 KIV-EEIFEAIRELRD----EGVTILLVEQNA------RFALE----IADRAYVLERGRVV 211 (222)
T ss_pred HHH-HHHHHHHHHHHH----CCCEEEEEeCCH------HHHHH----hccEEEEeeCCeEE
Confidence 765 445556665542 246778888721 11222 22356777777654
No 72
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=99.67 E-value=1.3e-16 Score=171.93 Aligned_cols=171 Identities=15% Similarity=0.097 Sum_probs=123.6
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccCC-CcCCc
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHP-AAKHG 475 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~-~~~~t 475 (630)
.+|++++|.+.+| ++++|+|||||||||++++||+++.+..|+|.+.+.+....... +....++.+... ++.+|
T Consensus 18 ~~l~~vsl~i~~G--e~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~---~r~ig~v~Q~~~lfp~~t 92 (356)
T PRK11650 18 QVIKGIDLDVADG--EFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPA---DRDIAMVFQNYALYPHMS 92 (356)
T ss_pred EEEeeeeEEEcCC--CEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHH---HCCEEEEeCCccccCCCC
Confidence 4789999999999 99999999999999999999999999999999999888654432 233445555433 66789
Q ss_pred chhhhHhhhccCCCCHHHH---HHHHHHHhhhcC-CCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCcc
Q psy11993 476 GREMVQLFEKGYGKDPAEI---AFRAISHARDMH-IDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNE 551 (630)
Q Consensus 476 v~env~l~~~~~~~d~~~i---a~~ai~~a~~~~-~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~D 551 (630)
+.+|+.+....++....+. +.++++.+...+ .+..+-..|||++++..|+++|. .+| .+|++|||++++|
T Consensus 93 v~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~QRvalARAL~-----~~P-~llLLDEP~s~LD 166 (356)
T PRK11650 93 VRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKPRELSGGQRQRVAMGRAIV-----REP-AVFLFDEPLSNLD 166 (356)
T ss_pred HHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHh-----cCC-CEEEEeCCcccCC
Confidence 9999987654333333332 233343333222 13345678999999999999999 888 5666999999999
Q ss_pred HHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 552 AVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 552 av~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
...+. .+.+.+.++.. ..+++.|++|+
T Consensus 167 ~~~r~-~l~~~l~~l~~---~~g~tii~vTH 193 (356)
T PRK11650 167 AKLRV-QMRLEIQRLHR---RLKTTSLYVTH 193 (356)
T ss_pred HHHHH-HHHHHHHHHHH---hcCCEEEEEeC
Confidence 87654 33344544432 12578888887
No 73
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.67 E-value=1.9e-16 Score=158.09 Aligned_cols=171 Identities=21% Similarity=0.147 Sum_probs=119.1
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccCC-CcCCc
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHP-AAKHG 475 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~-~~~~t 475 (630)
.+|++++|.+.+| ++++|+||||+||||+++.|++++.+..|+|.+.+.+..+... .+....++.+... ++.+|
T Consensus 14 ~il~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~---~~~~i~~v~q~~~~~~~~t 88 (213)
T cd03259 14 RALDDLSLTVEPG--EFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPP---ERRNIGMVFQDYALFPHLT 88 (213)
T ss_pred eeecceeEEEcCC--cEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCch---hhccEEEEcCchhhccCCc
Confidence 4789999999999 9999999999999999999999999999999998877643221 1223344444322 45689
Q ss_pred chhhhHhhhccCCCCHHH---HHHHHHHHhhhcC-CCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCcc
Q psy11993 476 GREMVQLFEKGYGKDPAE---IAFRAISHARDMH-IDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNE 551 (630)
Q Consensus 476 v~env~l~~~~~~~d~~~---ia~~ai~~a~~~~-~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~D 551 (630)
+.+|+.+....++..... .+.++++.+.... .+..+...|||++++..++++|. .+| .++++|||++|+|
T Consensus 89 v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~-----~~p-~~lllDEPt~~LD 162 (213)
T cd03259 89 VAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALA-----REP-SLLLLDEPLSALD 162 (213)
T ss_pred HHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHh-----cCC-CEEEEcCCcccCC
Confidence 999997654322222222 2233333332211 23446678999999999999999 788 5667999999999
Q ss_pred HHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 552 AVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 552 av~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
...+ ..+.+.+.++... .+.+.+++|+
T Consensus 163 ~~~~-~~l~~~l~~~~~~---~~~tii~~sH 189 (213)
T cd03259 163 AKLR-EELREELKELQRE---LGITTIYVTH 189 (213)
T ss_pred HHHH-HHHHHHHHHHHHH---cCCEEEEEec
Confidence 8765 3455556554321 1456777776
No 74
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=99.67 E-value=2.8e-16 Score=157.20 Aligned_cols=171 Identities=17% Similarity=0.155 Sum_probs=122.6
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccCC-CcCCc
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHP-AAKHG 475 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~-~~~~t 475 (630)
.+|++++|.+.+| ++++|+|+||+||||+++.|++.+.+..|+|.+.+.+.... ...++....++.+... ++.+|
T Consensus 19 ~il~~~sl~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~--~~~~~~~i~~~~q~~~~~~~~t 94 (218)
T cd03266 19 QAVDGVSFTVKPG--EVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKE--PAEARRRLGFVSDSTGLYDRLT 94 (218)
T ss_pred eeecceEEEEcCC--cEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEcccC--HHHHHhhEEEecCCcccCcCCC
Confidence 4889999999999 99999999999999999999999999999999988776432 2233445555555433 45579
Q ss_pred chhhhHhhhccCCCCHHH---HHHHHHHHhhhcC-CCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCcc
Q psy11993 476 GREMVQLFEKGYGKDPAE---IAFRAISHARDMH-IDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNE 551 (630)
Q Consensus 476 v~env~l~~~~~~~d~~~---ia~~ai~~a~~~~-~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~D 551 (630)
+.+|+.+....++..... .+.++++.+.... .+..+-..||+++++..++++|. .+| .+|++|||+.++|
T Consensus 95 v~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~-----~~p-~illlDEPt~~LD 168 (218)
T cd03266 95 ARENLEYFAGLYGLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALV-----HDP-PVLLLDEPTTGLD 168 (218)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhhhhhhcCHHHHHHHHHHHHHh-----cCC-CEEEEcCCCcCCC
Confidence 999998764433333322 2333343332221 13345678999999999999999 888 5666999999999
Q ss_pred HHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 552 AVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 552 av~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
...+ ..+.+.+.++.. .+.+.|++|+
T Consensus 169 ~~~~-~~l~~~l~~~~~----~~~tii~~tH 194 (218)
T cd03266 169 VMAT-RALREFIRQLRA----LGKCILFSTH 194 (218)
T ss_pred HHHH-HHHHHHHHHHHH----CCCEEEEEeC
Confidence 8765 455666766642 2467788886
No 75
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=99.67 E-value=1.6e-16 Score=170.92 Aligned_cols=171 Identities=20% Similarity=0.140 Sum_probs=124.5
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccCC-CcCCc
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHP-AAKHG 475 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~-~~~~t 475 (630)
.+|++++|.+.+| ++++|+|||||||||++++||+++.++.|+|.+.+.+....... ++...++.+... ++.+|
T Consensus 18 ~~l~~vs~~i~~G--e~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~---~r~ig~v~Q~~~lfp~~t 92 (353)
T TIGR03265 18 TALKDISLSVKKG--EFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQ---KRDYGIVFQSYALFPNLT 92 (353)
T ss_pred EEEEeeEEEEcCC--CEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHH---HCCEEEEeCCcccCCCCc
Confidence 4788999999999 99999999999999999999999999999999998887543322 233444544433 66799
Q ss_pred chhhhHhhhccCCCCHHHHHHHHHHHhhhcCC----CeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCcc
Q psy11993 476 GREMVQLFEKGYGKDPAEIAFRAISHARDMHI----DVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNE 551 (630)
Q Consensus 476 v~env~l~~~~~~~d~~~ia~~ai~~a~~~~~----D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~D 551 (630)
+.+|+.+.....+.+..+...++.+.++..++ +..+-..||+++++..++++|+ .+| .++++|||++++|
T Consensus 93 v~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~LSgGq~QRvaLARaL~-----~~P-~llLLDEP~s~LD 166 (353)
T TIGR03265 93 VADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYPGQLSGGQQQRVALARALA-----TSP-GLLLLDEPLSALD 166 (353)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhhCChhhCCHHHHHHHHHHHHHh-----cCC-CEEEEcCCcccCC
Confidence 99999886544443333333333333333333 3446678999999999999999 888 5666999999999
Q ss_pred HHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 552 AVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 552 av~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
...+. .+.+.+.++.. ..+++.|++|+
T Consensus 167 ~~~r~-~l~~~L~~l~~---~~~~tvi~vTH 193 (353)
T TIGR03265 167 ARVRE-HLRTEIRQLQR---RLGVTTIMVTH 193 (353)
T ss_pred HHHHH-HHHHHHHHHHH---hcCCEEEEEcC
Confidence 87653 34445544432 23578888887
No 76
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=99.67 E-value=1.7e-16 Score=170.56 Aligned_cols=171 Identities=18% Similarity=0.138 Sum_probs=124.7
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccCC-CcCCc
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHP-AAKHG 475 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~-~~~~t 475 (630)
.+|++++|.+.+| ++++|+|||||||||++++||+++.++.|+|.+.+.++...... ++...++.+... ++.+|
T Consensus 20 ~~l~~isl~i~~G--e~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~---~r~ig~vfQ~~~lfp~~t 94 (351)
T PRK11432 20 TVIDNLNLTIKQG--TMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQ---QRDICMVFQSYALFPHMS 94 (351)
T ss_pred EEEeeeEEEEcCC--CEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHH---HCCEEEEeCCcccCCCCC
Confidence 4789999999999 99999999999999999999999999999999999887543322 233444444433 66789
Q ss_pred chhhhHhhhccCCCCHHHH---HHHHHHHhhhcCC-CeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCcc
Q psy11993 476 GREMVQLFEKGYGKDPAEI---AFRAISHARDMHI-DVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNE 551 (630)
Q Consensus 476 v~env~l~~~~~~~d~~~i---a~~ai~~a~~~~~-D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~D 551 (630)
+.+|+.+....++....+. +.++++.+...++ +......|||++++..|+|+|+ .+| .+|++|||++++|
T Consensus 95 v~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~~~~LSgGq~QRVaLARaL~-----~~P-~lLLLDEP~s~LD 168 (351)
T PRK11432 95 LGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALI-----LKP-KVLLFDEPLSNLD 168 (351)
T ss_pred HHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHH-----cCC-CEEEEcCCcccCC
Confidence 9999988654444443333 3334433333322 4446778999999999999999 888 5666999999999
Q ss_pred HHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 552 AVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 552 av~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
..... .+.+.+.++.. ..+++.+++|+
T Consensus 169 ~~~r~-~l~~~l~~l~~---~~g~tii~vTH 195 (351)
T PRK11432 169 ANLRR-SMREKIRELQQ---QFNITSLYVTH 195 (351)
T ss_pred HHHHH-HHHHHHHHHHH---hcCCEEEEEcC
Confidence 87654 34445554432 23577888887
No 77
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=99.66 E-value=2.8e-16 Score=159.11 Aligned_cols=194 Identities=17% Similarity=0.134 Sum_probs=128.9
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccCC-CcCCc
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHP-AAKHG 475 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~-~~~~t 475 (630)
.+|++++|.+.+| ++++|+|||||||||+++.|++.+.+..|+|.+.+.+..+.......+....++.+... ++.+|
T Consensus 14 ~~l~~vsl~i~~G--e~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~~t 91 (236)
T cd03219 14 VALDDVSFSVRPG--EIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIGRTFQIPRLFPELT 91 (236)
T ss_pred EEecCceEEecCC--cEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCEEEEecccccccCCC
Confidence 4789999999999 99999999999999999999999999999999988776443322222222344444332 45689
Q ss_pred chhhhHhhhccCCC----------CHHH---HHHHHHHHhhhcC-CCeeeeccccchhchHHHHHHHHhhhhhcCCCeEE
Q psy11993 476 GREMVQLFEKGYGK----------DPAE---IAFRAISHARDMH-IDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLL 541 (630)
Q Consensus 476 v~env~l~~~~~~~----------d~~~---ia~~ai~~a~~~~-~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VL 541 (630)
+.+|+.+....... .... .+.++++.+.... .+..+-..|||++++..++++|. .+| .++
T Consensus 92 v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~-----~~p-~ll 165 (236)
T cd03219 92 VLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPAGELSYGQQRRLEIARALA-----TDP-KLL 165 (236)
T ss_pred HHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCChhhCCHHHHHHHHHHHHHh-----cCC-CEE
Confidence 99999765432211 1122 2233333332221 13345678999999999999999 788 566
Q ss_pred EEeccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcccCCcCccHHHHHHHHHHhCCcEEEEecCCCC
Q psy11993 542 FVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGTGQTY 613 (630)
Q Consensus 542 lV~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK~D~~~~~~G~~ls~~~~~g~PI~fvg~Gq~v 613 (630)
++|||+.++|...+. .+.+.+.++.. .+.+.|++|+- ...+. ...-.|..+..|+-+
T Consensus 166 llDEPt~~LD~~~~~-~l~~~l~~~~~----~~~tii~vsH~------~~~~~----~~~d~i~~l~~G~i~ 222 (236)
T cd03219 166 LLDEPAAGLNPEETE-ELAELIRELRE----RGITVLLVEHD------MDVVM----SLADRVTVLDQGRVI 222 (236)
T ss_pred EEcCCcccCCHHHHH-HHHHHHHHHHH----CCCEEEEEecC------HHHHH----HhCCEEEEEeCCEEE
Confidence 699999999987653 44556665542 24667888871 11122 222356777777643
No 78
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.66 E-value=2.9e-16 Score=158.53 Aligned_cols=174 Identities=17% Similarity=0.097 Sum_probs=123.4
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccCC-CcCCc
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHP-AAKHG 475 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~-~~~~t 475 (630)
.+|++++|.+.+| ++++|+||||+||||+++.|++.+.+..|+|.+.+.+.......+..+....++.+... ++.+|
T Consensus 14 ~~l~~vs~~i~~G--e~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 91 (230)
T TIGR03410 14 HILRGVSLEVPKG--EVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGIAYVPQGREIFPRLT 91 (230)
T ss_pred EEecceeeEECCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCeEEeccCCcccCCCc
Confidence 4789999999999 99999999999999999999999999999999998877544332222334455554433 45679
Q ss_pred chhhhHhhhccCCCCHHHHHHHHHHHhh-hc-CCCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCccHH
Q psy11993 476 GREMVQLFEKGYGKDPAEIAFRAISHAR-DM-HIDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAV 553 (630)
Q Consensus 476 v~env~l~~~~~~~d~~~ia~~ai~~a~-~~-~~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~Dav 553 (630)
+.+|+.+....++........+++.... .. ..+..+...||+++++..++++|. .+| .++++|||+.|+|..
T Consensus 92 v~~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la~al~-----~~p-~illlDEPt~~LD~~ 165 (230)
T TIGR03410 92 VEENLLTGLAALPRRSRKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALV-----TRP-KLLLLDEPTEGIQPS 165 (230)
T ss_pred HHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHhhCChhhCCHHHHHHHHHHHHHh-----cCC-CEEEecCCcccCCHH
Confidence 9999976543333332233344444332 11 134556678999999999999999 788 566699999999987
Q ss_pred HHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 554 DQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 554 ~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
.+. .+.+.+.++.. ..+.+.|++|+
T Consensus 166 ~~~-~l~~~l~~~~~---~~~~tii~~sH 190 (230)
T TIGR03410 166 IIK-DIGRVIRRLRA---EGGMAILLVEQ 190 (230)
T ss_pred HHH-HHHHHHHHHHH---cCCcEEEEEeC
Confidence 654 44555655432 12467778886
No 79
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=99.66 E-value=4.6e-16 Score=157.58 Aligned_cols=174 Identities=20% Similarity=0.187 Sum_probs=121.0
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHH--HHH-HHHhhhcccCC-Cc
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVE--QLR-THVRHLCSLHP-AA 472 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~e--QLr-~~~~~l~~~~~-~~ 472 (630)
.+|++++|.+.+| ++++|+||||+||||+++.|++.+.+..|+|.+.+.++.+....+ +++ ....++.+... ++
T Consensus 23 ~il~~isl~i~~G--e~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~ 100 (233)
T PRK11629 23 DVLHNVSFSIGEG--EMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAELRNQKLGFIYQFHHLLP 100 (233)
T ss_pred eeEEeeEEEEcCC--cEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHHHhccEEEEecCcccCC
Confidence 4899999999999 999999999999999999999999999999999998875543322 121 22344444332 45
Q ss_pred CCcchhhhHhhhccCCCCHHH---HHHHHHHHhhhcC-CCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEecccc
Q psy11993 473 KHGGREMVQLFEKGYGKDPAE---IAFRAISHARDMH-IDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALV 548 (630)
Q Consensus 473 ~~tv~env~l~~~~~~~d~~~---ia~~ai~~a~~~~-~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~ 548 (630)
.+|+.+|+.+.....+.+... .+.++++.+.... .+..+...||+++++..++++|. .+| .+|++|||+.
T Consensus 101 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrl~la~al~-----~~p-~lllLDEPt~ 174 (233)
T PRK11629 101 DFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQRVAIARALV-----NNP-RLVLADEPTG 174 (233)
T ss_pred CCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHh-----cCC-CEEEEeCCCC
Confidence 679999997743222222222 2333443333221 13345678999999999999999 788 5677999999
Q ss_pred CccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 549 GNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 549 g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
|+|.... ..+.+.+.++.. ..+.+.|++|+
T Consensus 175 ~LD~~~~-~~l~~~l~~~~~---~~g~tvii~sH 204 (233)
T PRK11629 175 NLDARNA-DSIFQLLGELNR---LQGTAFLVVTH 204 (233)
T ss_pred CCCHHHH-HHHHHHHHHHHH---hCCCEEEEEeC
Confidence 9998764 344555655532 12567788887
No 80
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.66 E-value=4e-16 Score=162.64 Aligned_cols=173 Identities=16% Similarity=0.097 Sum_probs=126.4
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccC--CCcCC
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLH--PAAKH 474 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~--~~~~~ 474 (630)
.+|++++|.+.+| ++++|+||||+||||+++.|++++.+..|+|.+.+.+..+... ..++....++.+.+ .+...
T Consensus 21 ~~l~~vsl~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~-~~~~~~i~~v~q~~~~~~~~~ 97 (279)
T PRK13650 21 YTLNDVSFHVKQG--EWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENV-WDIRHKIGMVFQNPDNQFVGA 97 (279)
T ss_pred eeeeeeEEEEeCC--CEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcH-HHHHhhceEEEcChHHhcccc
Confidence 4899999999999 9999999999999999999999999999999999988754333 23455556665543 24567
Q ss_pred cchhhhHhhhccCCCCHHHH---HHHHHHHhhhcC-CCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCc
Q psy11993 475 GGREMVQLFEKGYGKDPAEI---AFRAISHARDMH-IDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGN 550 (630)
Q Consensus 475 tv~env~l~~~~~~~d~~~i---a~~ai~~a~~~~-~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~ 550 (630)
|+.+|+.+.....+.++... +.++++.+...+ .+..+...|||++++..++++|. .+| .+|++|||+.|+
T Consensus 98 tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qrv~lAral~-----~~p-~lLlLDEPt~~L 171 (279)
T PRK13650 98 TVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVA-----MRP-KIIILDEATSML 171 (279)
T ss_pred cHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHH-----cCC-CEEEEECCcccC
Confidence 99999976543334444333 333444333322 24456788999999999999999 888 566699999999
Q ss_pred cHHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 551 EAVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 551 Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
|...+ ..+.+.+.++... .+.+.+++|+
T Consensus 172 D~~~~-~~l~~~l~~l~~~---~g~tilivtH 199 (279)
T PRK13650 172 DPEGR-LELIKTIKGIRDD---YQMTVISITH 199 (279)
T ss_pred CHHHH-HHHHHHHHHHHHh---cCCEEEEEec
Confidence 98765 4455556555421 2577788887
No 81
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.66 E-value=5.1e-16 Score=154.71 Aligned_cols=169 Identities=17% Similarity=0.173 Sum_probs=120.6
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccCC-CcCCc
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHP-AAKHG 475 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~-~~~~t 475 (630)
.+|++++|.+.+| +++|+||||+||||+++.|++.+.+..|+|.+.+.+..+.. ..++....++.+... ++.+|
T Consensus 14 ~~l~~vs~~i~~g---~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~--~~~~~~i~~~~q~~~~~~~~t 88 (211)
T cd03264 14 RALDGVSLTLGPG---MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQP--QKLRRRIGYLPQEFGVYPNFT 88 (211)
T ss_pred EEEcceeEEEcCC---cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccch--HHHHhheEEecCCCcccccCC
Confidence 4789999999886 89999999999999999999999999999999988765432 234555555555433 45579
Q ss_pred chhhhHhhhccCCCCHH---HHHHHHHHHhhhcC-CCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCcc
Q psy11993 476 GREMVQLFEKGYGKDPA---EIAFRAISHARDMH-IDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNE 551 (630)
Q Consensus 476 v~env~l~~~~~~~d~~---~ia~~ai~~a~~~~-~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~D 551 (630)
+.+|+.+.....+.+.. ..+..+++.+.... .+..+...|||++++..++++|. .+| .++++|||+.|+|
T Consensus 89 v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~-----~~p-~llllDEPt~~LD 162 (211)
T cd03264 89 VREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALV-----GDP-SILIVDEPTAGLD 162 (211)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHhCchhhCCHHHHHHHHHHHHHh-----cCC-CEEEEcCCcccCC
Confidence 99999765432222221 22333444333221 24456778999999999999999 788 5666999999999
Q ss_pred HHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 552 AVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 552 av~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
...+. .+.+.+.++.. ..+.+++|+
T Consensus 163 ~~~~~-~l~~~l~~~~~-----~~tii~vsH 187 (211)
T cd03264 163 PEERI-RFRNLLSELGE-----DRIVILSTH 187 (211)
T ss_pred HHHHH-HHHHHHHHHhC-----CCEEEEEcC
Confidence 87764 45556666642 356777776
No 82
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=99.66 E-value=3.1e-16 Score=168.26 Aligned_cols=175 Identities=18% Similarity=0.156 Sum_probs=123.9
Q ss_pred hhhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHH--HHHHHHhhhcccCC-Cc
Q psy11993 396 VDILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVE--QLRTHVRHLCSLHP-AA 472 (630)
Q Consensus 396 ~~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~e--QLr~~~~~l~~~~~-~~ 472 (630)
..+|++++|.+.+| ++++|+|||||||||++++|++.+.+..|+|.+.+.++.+....+ .++....++.+... ++
T Consensus 18 ~~il~~vsl~i~~G--ei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~ig~v~q~~~l~~ 95 (343)
T PRK11153 18 IHALNNVSLHIPAG--EIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKARRQIGMIFQHFNLLS 95 (343)
T ss_pred eEEEEeeEEEEcCC--CEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHhcCEEEEeCCCccCC
Confidence 35899999999999 999999999999999999999999999999999998876543321 22333444444333 45
Q ss_pred CCcchhhhHhhhccCCCCHHHH---HHHHHHHhhhcC-CCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEecccc
Q psy11993 473 KHGGREMVQLFEKGYGKDPAEI---AFRAISHARDMH-IDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALV 548 (630)
Q Consensus 473 ~~tv~env~l~~~~~~~d~~~i---a~~ai~~a~~~~-~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~ 548 (630)
.+|+.+|+.+....++...... +.++++.+.... .+..+-..|||++++..++++|. .+| .+|++|||+.
T Consensus 96 ~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~-----~~p-~iLlLDEPts 169 (343)
T PRK11153 96 SRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARALA-----SNP-KVLLCDEATS 169 (343)
T ss_pred CCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHH-----cCC-CEEEEeCCcc
Confidence 6899999987644333333222 233343333222 13345678999999999999999 888 5667999999
Q ss_pred CccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 549 GNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 549 g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
|+|...+. .+.+.+.++.. ..+.+.|++|+
T Consensus 170 ~LD~~~~~-~l~~~L~~l~~---~~g~tiilvtH 199 (343)
T PRK11153 170 ALDPATTR-SILELLKDINR---ELGLTIVLITH 199 (343)
T ss_pred cCCHHHHH-HHHHHHHHHHH---hcCCEEEEEeC
Confidence 99987653 44455555532 12567777776
No 83
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.65 E-value=4e-16 Score=162.21 Aligned_cols=172 Identities=17% Similarity=0.091 Sum_probs=123.7
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccC--CCcCC
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLH--PAAKH 474 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~--~~~~~ 474 (630)
.+|++++|.+.+| ++++|+||||+||||++..|++++.+..|+|.+.+.+...... .+++....++.+.+ .+...
T Consensus 19 ~~l~~isl~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~-~~~~~~i~~v~q~~~~~~~~~ 95 (274)
T PRK13647 19 KALKGLSLSIPEG--SKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENE-KWVRSKVGLVFQDPDDQVFSS 95 (274)
T ss_pred eeeeeEEEEEcCC--CEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCH-HHHHhhEEEEecChhhhhccC
Confidence 4899999999999 9999999999999999999999999999999999887643322 23444455555543 24457
Q ss_pred cchhhhHhhhccCCCCHHHH---HHHHHHHhhhcC-CCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCc
Q psy11993 475 GGREMVQLFEKGYGKDPAEI---AFRAISHARDMH-IDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGN 550 (630)
Q Consensus 475 tv~env~l~~~~~~~d~~~i---a~~ai~~a~~~~-~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~ 550 (630)
|+.+|+.+.....+.+.... +.++++.+...+ .+..+.+.||+++++..++++|. .+| .+|++|||+.++
T Consensus 96 tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~~qrv~laraL~-----~~p-~llllDEPt~~L 169 (274)
T PRK13647 96 TVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLA-----MDP-DVIVLDEPMAYL 169 (274)
T ss_pred cHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCChhhCCHHHHHHHHHHHHHH-----cCC-CEEEEECCCcCC
Confidence 99999976533223333222 233333333221 24456788999999999999999 888 566699999999
Q ss_pred cHHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 551 EAVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 551 Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
|...+. .+.+.+.++.. .+.+.+++|+
T Consensus 170 D~~~~~-~l~~~l~~~~~----~g~tili~tH 196 (274)
T PRK13647 170 DPRGQE-TLMEILDRLHN----QGKTVIVATH 196 (274)
T ss_pred CHHHHH-HHHHHHHHHHH----CCCEEEEEeC
Confidence 988764 44556655542 2567788887
No 84
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.65 E-value=4.1e-16 Score=162.62 Aligned_cols=173 Identities=16% Similarity=0.090 Sum_probs=124.3
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccC--CCcCC
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLH--PAAKH 474 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~--~~~~~ 474 (630)
.+|++++|.+.+| ++++|+||||+||||+++.|++.+.+..|+|.+.+.++.+.... +++....++.+.. .+...
T Consensus 21 ~~l~~vsl~i~~G--e~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~-~~~~~i~~~~q~~~~~~~~~ 97 (279)
T PRK13635 21 YALKDVSFSVYEG--EWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVW-DVRRQVGMVFQNPDNQFVGA 97 (279)
T ss_pred cceeeeEEEEcCC--CEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHH-HHhhheEEEEeCHHHhcccc
Confidence 4899999999999 99999999999999999999999999999999999887544332 3444555565543 34567
Q ss_pred cchhhhHhhhccCCCCHHHH---HHHHHHHhhhcC-CCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCc
Q psy11993 475 GGREMVQLFEKGYGKDPAEI---AFRAISHARDMH-IDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGN 550 (630)
Q Consensus 475 tv~env~l~~~~~~~d~~~i---a~~ai~~a~~~~-~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~ 550 (630)
|+.+|+.+.....+....+. +..+++.+.... .+..+...|||++++..++++|. .+| .+|++|||+.|+
T Consensus 98 tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~-----~~p-~lllLDEPt~gL 171 (279)
T PRK13635 98 TVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLA-----LQP-DIIILDEATSML 171 (279)
T ss_pred cHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHH-----cCC-CEEEEeCCcccC
Confidence 99999976543333333222 233333322221 23446678999999999999999 888 566699999999
Q ss_pred cHHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 551 EAVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 551 Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
|...+. .+.+.+.++.. ..+.+.+++|+
T Consensus 172 D~~~~~-~l~~~l~~l~~---~~~~tilivsH 199 (279)
T PRK13635 172 DPRGRR-EVLETVRQLKE---QKGITVLSITH 199 (279)
T ss_pred CHHHHH-HHHHHHHHHHH---cCCCEEEEEec
Confidence 988654 44555655542 12577788886
No 85
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=99.65 E-value=7e-16 Score=153.71 Aligned_cols=173 Identities=20% Similarity=0.176 Sum_probs=120.7
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCcc-HHHHHHHHHhhhcccCC-CcCC
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAG-AVEQLRTHVRHLCSLHP-AAKH 474 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~g-a~eQLr~~~~~l~~~~~-~~~~ 474 (630)
.+|++++|.+.+| ++++|+||||+||||+++.|++.+.+..|+|.+.+.+..+.. ....++....++.+... ++.+
T Consensus 14 ~~l~~~s~~i~~G--~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 91 (213)
T cd03262 14 HVLKGIDLTVKKG--EVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQKVGMVFQQFNLFPHL 91 (213)
T ss_pred EeecCceEEECCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhcceEEecccccCCCC
Confidence 4789999999999 999999999999999999999999999999999887764321 12233444455554433 4458
Q ss_pred cchhhhHhhhc-cCCCCHHHH---HHHHHHHhhhcC-CCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccC
Q psy11993 475 GGREMVQLFEK-GYGKDPAEI---AFRAISHARDMH-IDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVG 549 (630)
Q Consensus 475 tv~env~l~~~-~~~~d~~~i---a~~ai~~a~~~~-~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g 549 (630)
|+.+|+.+... .++.+.... +.++++.+.... .+..+...||+++++..++++|. .+| .++++|||+.|
T Consensus 92 t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~-----~~p-~llllDEP~~~ 165 (213)
T cd03262 92 TVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARALA-----MNP-KVMLFDEPTSA 165 (213)
T ss_pred cHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhhCccccCHHHHHHHHHHHHHh-----cCC-CEEEEeCCccC
Confidence 99999976532 122232222 223333322211 23446678999999999999999 788 56669999999
Q ss_pred ccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 550 NEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 550 ~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
+|...+ ..+.+.+.++.. .+.+.|++|+
T Consensus 166 LD~~~~-~~l~~~l~~~~~----~~~tvi~~sh 193 (213)
T cd03262 166 LDPELV-GEVLDVMKDLAE----EGMTMVVVTH 193 (213)
T ss_pred CCHHHH-HHHHHHHHHHHH----cCCEEEEEeC
Confidence 998765 455566666543 1456777776
No 86
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.65 E-value=4.6e-16 Score=162.85 Aligned_cols=173 Identities=17% Similarity=0.172 Sum_probs=123.0
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCc---cHHHHHHHHHhhhcccC--CC
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRA---GAVEQLRTHVRHLCSLH--PA 471 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~---ga~eQLr~~~~~l~~~~--~~ 471 (630)
.+|++++|.+.+| ++++|+||||+||||+++.|++.+.+..|+|.+.+.+.... ......+....++.+.. ..
T Consensus 21 ~~l~~vsl~i~~G--e~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~v~q~~~~~~ 98 (287)
T PRK13641 21 KGLDNISFELEEG--SFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLKKLRKKVSLVFQFPEAQL 98 (287)
T ss_pred cceeeeEEEEeCC--CEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhceEEEEeChhhhh
Confidence 4899999999999 99999999999999999999999999999999999876432 12233344455555543 23
Q ss_pred cCCcchhhhHhhhccCCCCHHHH---HHHHHHHhhhc-C-CCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEecc
Q psy11993 472 AKHGGREMVQLFEKGYGKDPAEI---AFRAISHARDM-H-IDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEA 546 (630)
Q Consensus 472 ~~~tv~env~l~~~~~~~d~~~i---a~~ai~~a~~~-~-~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~ 546 (630)
..+|+.+|+.+....+....... +.++++.+... . .+..+-+.||+++++..++++|+ .+| .+|++|||
T Consensus 99 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrl~laral~-----~~p-~lLlLDEP 172 (287)
T PRK13641 99 FENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGVMA-----YEP-EILCLDEP 172 (287)
T ss_pred ccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhhCCcccCCHHHHHHHHHHHHHH-----cCC-CEEEEECC
Confidence 35799999976433233333332 23333333332 1 23446788999999999999999 888 67779999
Q ss_pred ccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 547 LVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 547 ~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
+.|+|...+ ..+.+.+.++.. .+.+.+++|+
T Consensus 173 t~gLD~~~~-~~l~~~l~~l~~----~g~tvlivsH 203 (287)
T PRK13641 173 AAGLDPEGR-KEMMQLFKDYQK----AGHTVILVTH 203 (287)
T ss_pred CCCCCHHHH-HHHHHHHHHHHh----CCCEEEEEeC
Confidence 999998765 445556665532 2567778776
No 87
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.65 E-value=2e-16 Score=157.55 Aligned_cols=174 Identities=21% Similarity=0.192 Sum_probs=122.3
Q ss_pred hhhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccCC----C
Q psy11993 396 VDILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHP----A 471 (630)
Q Consensus 396 ~~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~----~ 471 (630)
..+|++|+|.+++| ++++||||+|+||||++++|++...+..|.|.+.+.++...... ++|.+...++..++ .
T Consensus 17 ~~aL~~Vnl~I~~G--E~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k-~lr~~r~~iGmIfQ~~nLv 93 (258)
T COG3638 17 HQALKDVNLEINQG--EMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGK-ELRKLRRDIGMIFQQFNLV 93 (258)
T ss_pred ceeeeeEeEEeCCC--cEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchH-HHHHHHHhceeEeccCCcc
Confidence 46899999999999 99999999999999999999999999999999999887544332 44444444444333 6
Q ss_pred cCCcchhhhHhhhccCCC--------C---HHHHHHHHHHHhhhcCCCe-eeeccccchhchHHHHHHHHhhhhhcCCCe
Q psy11993 472 AKHGGREMVQLFEKGYGK--------D---PAEIAFRAISHARDMHIDV-VLIDTAGRMQDNEPLMRALAKLVKVNQPDL 539 (630)
Q Consensus 472 ~~~tv~env~l~~~~~~~--------d---~~~ia~~ai~~a~~~~~D~-vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~ 539 (630)
+.+++.+||.....+|.. - ....+.++++.+...++-+ .--.+||++|++..++|+|. .+| .
T Consensus 94 ~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~~LSGGQQQRVaIARaL~-----Q~p-k 167 (258)
T COG3638 94 PRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRASTLSGGQQQRVAIARALV-----QQP-K 167 (258)
T ss_pred cccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhccCCcchhHHHHHHHHHh-----cCC-C
Confidence 789999999886655432 1 1222344444333221111 13356999999999999999 788 6
Q ss_pred EEEEeccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 540 LLFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 540 VLlV~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
+|+.|||.+.+|.... +..-+.+++... ..+++.|+--+
T Consensus 168 iILADEPvasLDp~~a-~~Vm~~l~~in~---~~g~Tvi~nLH 206 (258)
T COG3638 168 IILADEPVASLDPESA-KKVMDILKDINQ---EDGITVIVNLH 206 (258)
T ss_pred EEecCCcccccChhhH-HHHHHHHHHHHH---HcCCEEEEEec
Confidence 7779999999998764 333345555543 23576555443
No 88
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=99.65 E-value=3.5e-16 Score=168.78 Aligned_cols=171 Identities=20% Similarity=0.160 Sum_probs=123.7
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcC--CeEEEeecccCCccHHHHHHHHHhhhcccCC-CcC
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENN--LNVLIAACDTFRAGAVEQLRTHVRHLCSLHP-AAK 473 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~g--gkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~-~~~ 473 (630)
.+|++++|.+.+| ++++|+|||||||||++++||+++.++. |+|.+.+.++...... ++...++.+... ++.
T Consensus 19 ~~l~~vsl~i~~G--e~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~~---~r~ig~vfQ~~~l~p~ 93 (362)
T TIGR03258 19 TVLDDLSLEIEAG--ELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPH---KRGLALLFQNYALFPH 93 (362)
T ss_pred EEEeeeEEEECCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCHH---HCCEEEEECCcccCCC
Confidence 4789999999999 9999999999999999999999999999 9999999887543321 223344444333 667
Q ss_pred CcchhhhHhhhccCCCCHHHHH---HHHHHHhhhcC-CCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccC
Q psy11993 474 HGGREMVQLFEKGYGKDPAEIA---FRAISHARDMH-IDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVG 549 (630)
Q Consensus 474 ~tv~env~l~~~~~~~d~~~ia---~~ai~~a~~~~-~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g 549 (630)
+|+.+|+.+....++....+.. .++++.+...+ .+..+-..||+++++..|+++|+ .+| .+|++|||+++
T Consensus 94 ~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSgGq~QRvaLARAL~-----~~P-~llLLDEP~s~ 167 (362)
T TIGR03258 94 LKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLPAQLSGGMQQRIAIARAIA-----IEP-DVLLLDEPLSA 167 (362)
T ss_pred CcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCChhhCCHHHHHHHHHHHHHh-----cCC-CEEEEcCcccc
Confidence 8999999876544443433333 23333333322 24456678999999999999999 888 56669999999
Q ss_pred ccHHHHHHHHHHHHhhcccCCCCC-CeeEEEEcc
Q psy11993 550 NEAVDQLVKFNNAMADHSLSDNPH-LIDGIVLTK 582 (630)
Q Consensus 550 ~Dav~ql~~f~~~l~~~~~~~~~~-~i~gIIlTK 582 (630)
+|.... ..+.+.+.++.. .. +++.|++|+
T Consensus 168 LD~~~r-~~l~~~l~~l~~---~~~g~til~vTH 197 (362)
T TIGR03258 168 LDANIR-ANMREEIAALHE---ELPELTILCVTH 197 (362)
T ss_pred CCHHHH-HHHHHHHHHHHH---hCCCCEEEEEeC
Confidence 998754 344555554432 12 577888887
No 89
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.65 E-value=4.4e-16 Score=155.09 Aligned_cols=168 Identities=15% Similarity=0.124 Sum_probs=118.8
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccCC-CcCCc
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHP-AAKHG 475 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~-~~~~t 475 (630)
.+|++++|.+.+| ++++|+|||||||||+++.|++.+.+..|+|.+.+.+... ..+....++.+... ++.+|
T Consensus 14 ~~l~~v~~~i~~G--~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~-----~~~~~i~~~~q~~~~~~~~t 86 (210)
T cd03269 14 TALDDISFSVEKG--EIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDI-----AARNRIGYLPEERGLYPKMK 86 (210)
T ss_pred EEEeeeEEEEcCC--cEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhH-----HHHccEEEeccCCcCCcCCc
Confidence 4788999999999 9999999999999999999999999999999998876521 22333444444333 45689
Q ss_pred chhhhHhhhccCCCCHH---HHHHHHHHHhhhcC-CCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCcc
Q psy11993 476 GREMVQLFEKGYGKDPA---EIAFRAISHARDMH-IDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNE 551 (630)
Q Consensus 476 v~env~l~~~~~~~d~~---~ia~~ai~~a~~~~-~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~D 551 (630)
+.+|+.++...++.... ..+.++++.+.... .+..+...||+++++..++++|. .+| .++++|||+.|+|
T Consensus 87 v~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~-----~~p-~~lllDEP~~~LD 160 (210)
T cd03269 87 VIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVI-----HDP-ELLILDEPFSGLD 160 (210)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHcCChHHHhCcHhhCCHHHHHHHHHHHHHh-----cCC-CEEEEeCCCcCCC
Confidence 99999775433332222 22333333332211 13345678999999999999999 788 5677999999999
Q ss_pred HHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 552 AVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 552 av~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
...+ ..+.+.+.++.. .+.+.+++|+
T Consensus 161 ~~~~-~~~~~~l~~~~~----~~~tii~~sH 186 (210)
T cd03269 161 PVNV-ELLKDVIRELAR----AGKTVILSTH 186 (210)
T ss_pred HHHH-HHHHHHHHHHHH----CCCEEEEECC
Confidence 8765 445556665542 2466778776
No 90
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=99.65 E-value=5.9e-16 Score=155.26 Aligned_cols=174 Identities=20% Similarity=0.170 Sum_probs=119.7
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHH--HHH-HHHhhhcccCC-Cc
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVE--QLR-THVRHLCSLHP-AA 472 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~e--QLr-~~~~~l~~~~~-~~ 472 (630)
.+|++++|.+.+| ++++|+||||+||||+++.|++.+.+..|+|.+.+.+.......+ +++ ....++.+... ++
T Consensus 19 ~~l~~isl~i~~G--~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~ 96 (221)
T TIGR02211 19 RVLKGVSLSIGKG--EIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLRNKKLGFIYQFHHLLP 96 (221)
T ss_pred EeEeeeEEEEcCC--cEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHHHhcEEEEecccccCC
Confidence 4789999999999 999999999999999999999999999999999887764433221 122 23444444433 45
Q ss_pred CCcchhhhHhhhccCCCCHHH---HHHHHHHHhhhcC-CCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEecccc
Q psy11993 473 KHGGREMVQLFEKGYGKDPAE---IAFRAISHARDMH-IDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALV 548 (630)
Q Consensus 473 ~~tv~env~l~~~~~~~d~~~---ia~~ai~~a~~~~-~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~ 548 (630)
.+|+.+|+.+.......+... .+.++++.+.... .+..+-..|||++++..++++|. .+| .++++|||+.
T Consensus 97 ~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~-----~~p-~illlDEPt~ 170 (221)
T TIGR02211 97 DFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINHRPSELSGGERQRVAIARALV-----NQP-SLVLADEPTG 170 (221)
T ss_pred CCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHh-----CCC-CEEEEeCCCC
Confidence 689999997643222222222 2233333322211 13345678999999999999999 788 5677999999
Q ss_pred CccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 549 GNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 549 g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
++|...+. .+.+.+.++... .+.+.|++|+
T Consensus 171 ~LD~~~~~-~l~~~l~~~~~~---~~~tii~~tH 200 (221)
T TIGR02211 171 NLDNNNAK-IIFDLMLELNRE---LNTSFLVVTH 200 (221)
T ss_pred cCCHHHHH-HHHHHHHHHHHh---cCCEEEEEeC
Confidence 99987653 455556555321 1467788886
No 91
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=99.65 E-value=3.6e-16 Score=155.47 Aligned_cols=169 Identities=15% Similarity=0.119 Sum_probs=121.0
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccCC-CcCCc
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHP-AAKHG 475 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~-~~~~t 475 (630)
.+|++++|.+.+| ++++|+||||+||||+++.|++.+.+..|+|.+.+.++... ..++....++.+... ++.+|
T Consensus 14 ~~l~~~~~~i~~G--~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~---~~~~~~i~~~~q~~~~~~~~t 88 (208)
T cd03268 14 RVLDDISLHVKKG--EIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKN---IEALRRIGALIEAPGFYPNLT 88 (208)
T ss_pred EeEeeeEEEEcCC--cEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccch---HHHHhhEEEecCCCccCccCc
Confidence 4889999999999 99999999999999999999999999999999998876432 233334444544332 55689
Q ss_pred chhhhHhhhccCCCCHHHHHHHHHHHhhhcC-CCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCccHHH
Q psy11993 476 GREMVQLFEKGYGKDPAEIAFRAISHARDMH-IDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVD 554 (630)
Q Consensus 476 v~env~l~~~~~~~d~~~ia~~ai~~a~~~~-~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~Dav~ 554 (630)
+.+|+.++...++.+. ..+..+++.+.... .+..+...||+++++..++++|. .+| .++++|||+.|+|...
T Consensus 89 v~e~l~~~~~~~~~~~-~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~-----~~p-~llllDEPt~~LD~~~ 161 (208)
T cd03268 89 ARENLRLLARLLGIRK-KRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALL-----GNP-DLLILDEPTNGLDPDG 161 (208)
T ss_pred HHHHHHHHHHhcCCcH-HHHHHHHHHcCCHHHHhhhHhhCCHHHHHHHHHHHHHh-----cCC-CEEEECCCcccCCHHH
Confidence 9999977643333222 22334444433221 13345678999999999999999 788 5777999999999876
Q ss_pred HHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 555 QLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 555 ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
+. .+.+.+.++.. .+.+.|++|+
T Consensus 162 ~~-~l~~~l~~~~~----~~~tii~~tH 184 (208)
T cd03268 162 IK-ELRELILSLRD----QGITVLISSH 184 (208)
T ss_pred HH-HHHHHHHHHHH----CCCEEEEEcC
Confidence 54 44455555432 2466778776
No 92
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=99.64 E-value=6.5e-16 Score=156.80 Aligned_cols=172 Identities=19% Similarity=0.178 Sum_probs=121.1
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccCC-CcCCc
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHP-AAKHG 475 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~-~~~~t 475 (630)
.+|++++|.+.+| ++++|+||||+||||+++.|++++.+..|+|.+.+.++..... .. +....++.+... ++.+|
T Consensus 15 ~~l~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~-~~-~~~i~~~~q~~~~~~~~t 90 (236)
T TIGR03864 15 RALDDVSFTVRPG--EFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPR-AA-LARLGVVFQQPTLDLDLS 90 (236)
T ss_pred EEEeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCCh-hh-hhhEEEeCCCCCCcccCc
Confidence 4789999999999 9999999999999999999999999999999998877643222 12 223445554433 46689
Q ss_pred chhhhHhhhccCCCCHHHHHHHHHHHhhhcCC----CeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCcc
Q psy11993 476 GREMVQLFEKGYGKDPAEIAFRAISHARDMHI----DVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNE 551 (630)
Q Consensus 476 v~env~l~~~~~~~d~~~ia~~ai~~a~~~~~----D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~D 551 (630)
+.+|+.+....++.........+.+.+...++ +..+...||+++++..++++|. .+| .++++|||+.|+|
T Consensus 91 ~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~-----~~p-~llllDEP~~~LD 164 (236)
T TIGR03864 91 VRQNLRYHAALHGLSRAEARERIAALLARLGLAERADDKVRELNGGHRRRVEIARALL-----HRP-ALLLLDEPTVGLD 164 (236)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHh-----cCC-CEEEEcCCccCCC
Confidence 99999775433333322222223333333332 3446678999999999999999 788 5666999999999
Q ss_pred HHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 552 AVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 552 av~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
...+. .+.+.+.++.. ..+.+.+++|+
T Consensus 165 ~~~~~-~l~~~l~~~~~---~~~~tiii~sH 191 (236)
T TIGR03864 165 PASRA-AIVAHVRALCR---DQGLSVLWATH 191 (236)
T ss_pred HHHHH-HHHHHHHHHHH---hCCCEEEEEec
Confidence 88754 44455655542 12466778876
No 93
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.64 E-value=8.5e-16 Score=155.42 Aligned_cols=174 Identities=19% Similarity=0.141 Sum_probs=121.5
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHH--HHHHHHHhhhcccCC-CcC
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAV--EQLRTHVRHLCSLHP-AAK 473 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~--eQLr~~~~~l~~~~~-~~~ 473 (630)
.+|++++|.+.+| ++++|+||||+||||+++.|++++.+..|+|.+.+.+..+.... ..++....++.+... ++.
T Consensus 19 ~il~~~s~~i~~G--e~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 96 (233)
T cd03258 19 TALKDVSLSVPKG--EIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSS 96 (233)
T ss_pred eeeecceEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhheEEEccCcccCCC
Confidence 4789999999999 99999999999999999999999999999999998876543222 223444455555433 446
Q ss_pred CcchhhhHhhhccCCCCHHH---HHHHHHHHhhhcC-CCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccC
Q psy11993 474 HGGREMVQLFEKGYGKDPAE---IAFRAISHARDMH-IDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVG 549 (630)
Q Consensus 474 ~tv~env~l~~~~~~~d~~~---ia~~ai~~a~~~~-~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g 549 (630)
+|+.+|+.+....++..... .+.++++.+.... .+..+...|||++++..++++|. .+| .++++|||+.|
T Consensus 97 ~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~-----~~p-~lllLDEP~~~ 170 (233)
T cd03258 97 RTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALA-----NNP-KVLLCDEATSA 170 (233)
T ss_pred CcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhcChhhCCHHHHHHHHHHHHHh-----cCC-CEEEecCCCCc
Confidence 89999997643322222222 2333343333221 23446678999999999999999 788 46669999999
Q ss_pred ccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 550 NEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 550 ~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
+|...+. .|.+.+.++... .+.+.|++|+
T Consensus 171 LD~~~~~-~l~~~l~~~~~~---~~~tvii~sH 199 (233)
T cd03258 171 LDPETTQ-SILALLRDINRE---LGLTIVLITH 199 (233)
T ss_pred CCHHHHH-HHHHHHHHHHHH---cCCEEEEEeC
Confidence 9987653 445555554321 1466778886
No 94
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=99.64 E-value=4.1e-16 Score=168.96 Aligned_cols=171 Identities=18% Similarity=0.157 Sum_probs=124.0
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccCC-CcCCc
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHP-AAKHG 475 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~-~~~~t 475 (630)
.+|++++|.+.+| ++++|+|||||||||++++||+++.++.|+|.+.+.++...... ++...++.+... ++.+|
T Consensus 28 ~~l~~vsl~i~~G--e~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~---~r~ig~vfQ~~~lfp~lt 102 (375)
T PRK09452 28 EVISNLDLTINNG--EFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAE---NRHVNTVFQSYALFPHMT 102 (375)
T ss_pred EEEeeeEEEEeCC--CEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHH---HCCEEEEecCcccCCCCC
Confidence 4788999999999 99999999999999999999999999999999999887543332 233444544433 67889
Q ss_pred chhhhHhhhccCCCCHHHH---HHHHHHHhhhcC-CCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCcc
Q psy11993 476 GREMVQLFEKGYGKDPAEI---AFRAISHARDMH-IDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNE 551 (630)
Q Consensus 476 v~env~l~~~~~~~d~~~i---a~~ai~~a~~~~-~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~D 551 (630)
+.+|+.+....++....+. +.++++.+...+ .+..+...||+++++..|+++|+ .+| .+|++|||++++|
T Consensus 103 v~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~~LSgGq~QRVaLARaL~-----~~P-~llLLDEP~s~LD 176 (375)
T PRK09452 103 VFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVV-----NKP-KVLLLDESLSALD 176 (375)
T ss_pred HHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHh-----cCC-CEEEEeCCCCcCC
Confidence 9999987644333333332 233333333322 23445677999999999999999 888 5677999999999
Q ss_pred HHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 552 AVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 552 av~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
...+. .+.+.+.++.. ..+++.|++|+
T Consensus 177 ~~~r~-~l~~~L~~l~~---~~g~tiI~vTH 203 (375)
T PRK09452 177 YKLRK-QMQNELKALQR---KLGITFVFVTH 203 (375)
T ss_pred HHHHH-HHHHHHHHHHH---hcCCEEEEEeC
Confidence 87543 45555555442 12577888887
No 95
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=99.64 E-value=7.7e-16 Score=155.13 Aligned_cols=172 Identities=22% Similarity=0.176 Sum_probs=119.4
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHH-----HhcCCeEEEeecccCCccH-HHHHHHHHhhhcccCC
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWL-----IENNLNVLIAACDTFRAGA-VEQLRTHVRHLCSLHP 470 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l-----~~~ggkVlI~~~Dt~R~ga-~eQLr~~~~~l~~~~~ 470 (630)
.+|++++|.+.+| ++++|+||||+||||+++.|++++ .+..|+|.+.+.+..+... ...++....++.+...
T Consensus 14 ~~l~~vsl~i~~G--e~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~ 91 (227)
T cd03260 14 HALKDISLDIPKG--EITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLELRRRVGMVFQKPN 91 (227)
T ss_pred eeeeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHHHHhhEEEEecCch
Confidence 4789999999999 999999999999999999999999 8899999998887643321 2233444455555433
Q ss_pred CcCCcchhhhHhhhccCCCCH----HHHHHHHHHHhhhcCC-Cee--eeccccchhchHHHHHHHHhhhhhcCCCeEEEE
Q psy11993 471 AAKHGGREMVQLFEKGYGKDP----AEIAFRAISHARDMHI-DVV--LIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFV 543 (630)
Q Consensus 471 ~~~~tv~env~l~~~~~~~d~----~~ia~~ai~~a~~~~~-D~v--lIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV 543 (630)
...+|+.+|+.+....++... ...+.++++.+..... +.. ....|||++++..++++|. .+| .++++
T Consensus 92 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~-----~~p-~llll 165 (227)
T cd03260 92 PFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQQRLCLARALA-----NEP-EVLLL 165 (227)
T ss_pred hccccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCCcccCCHHHHHHHHHHHHHh-----cCC-CEEEE
Confidence 336899999976533222211 1223334443332221 222 3678999999999999999 788 56669
Q ss_pred eccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 544 GEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 544 ~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
|||++|+|...+. .+.+.+.++.. ..+.|++|+
T Consensus 166 DEPt~~LD~~~~~-~l~~~l~~~~~-----~~tii~~sH 198 (227)
T cd03260 166 DEPTSALDPISTA-KIEELIAELKK-----EYTIVIVTH 198 (227)
T ss_pred eCCCccCCHHHHH-HHHHHHHHHhh-----CcEEEEEec
Confidence 9999999987654 44556665543 255677776
No 96
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.64 E-value=6e-16 Score=157.08 Aligned_cols=174 Identities=21% Similarity=0.194 Sum_probs=120.9
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccH--HHHHHHHHhhhcccCC-CcC
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGA--VEQLRTHVRHLCSLHP-AAK 473 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga--~eQLr~~~~~l~~~~~-~~~ 473 (630)
.+|++++|.+.+| ++++|+||||+||||+++.|++++.+..|+|.+.+.++.+... ...++....++.+... ++.
T Consensus 15 ~~l~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 92 (241)
T cd03256 15 KALKDVSLSINPG--EFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQIGMIFQQFNLIER 92 (241)
T ss_pred EEEecceEEEcCC--CEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHhccEEEcccCccccc
Confidence 4789999999999 9999999999999999999999999999999999887654332 2234444555555433 455
Q ss_pred CcchhhhHhhhcc--------CCC-CH--HHHHHHHHHHhhhcC-CCeeeeccccchhchHHHHHHHHhhhhhcCCCeEE
Q psy11993 474 HGGREMVQLFEKG--------YGK-DP--AEIAFRAISHARDMH-IDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLL 541 (630)
Q Consensus 474 ~tv~env~l~~~~--------~~~-d~--~~ia~~ai~~a~~~~-~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VL 541 (630)
+|+.+|+.+.... .+. .. ...+.++++.+.... .+..+...||+++++..++++|. .+| .++
T Consensus 93 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~-----~~p-~ll 166 (241)
T cd03256 93 LSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQRVAIARALM-----QQP-KLI 166 (241)
T ss_pred CcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCcccCCHHHHHHHHHHHHHh-----cCC-CEE
Confidence 8999998653211 011 11 122333343332221 23446678999999999999999 788 567
Q ss_pred EEeccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 542 FVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 542 lV~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
++|||+.|+|.... ..+.+.+.++... .+.+.|++|+
T Consensus 167 llDEPt~~LD~~~~-~~l~~~l~~~~~~---~~~tii~~tH 203 (241)
T cd03256 167 LADEPVASLDPASS-RQVMDLLKRINRE---EGITVIVSLH 203 (241)
T ss_pred EEeCccccCCHHHH-HHHHHHHHHHHHh---cCCEEEEEeC
Confidence 79999999998765 3445556555321 2467788887
No 97
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=99.64 E-value=4.7e-16 Score=155.07 Aligned_cols=171 Identities=17% Similarity=0.104 Sum_probs=119.1
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccCC-CcCCc
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHP-AAKHG 475 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~-~~~~t 475 (630)
.+|++++|.+.+| ++++|+||||+||||+++.|++.+.+.+|+|.+.+.+..+.... +....++.+... ++..|
T Consensus 14 ~~l~~is~~i~~G--e~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~---~~~i~~~~q~~~~~~~~t 88 (213)
T cd03301 14 TALDDLNLDIADG--EFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPK---DRDIAMVFQNYALYPHMT 88 (213)
T ss_pred eeeeceEEEEcCC--cEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcc---cceEEEEecChhhccCCC
Confidence 4789999999999 99999999999999999999999999999999988876432211 123344444322 44679
Q ss_pred chhhhHhhhccCCCCHHHHHHHHHHHhhhcCC----CeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCcc
Q psy11993 476 GREMVQLFEKGYGKDPAEIAFRAISHARDMHI----DVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNE 551 (630)
Q Consensus 476 v~env~l~~~~~~~d~~~ia~~ai~~a~~~~~----D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~D 551 (630)
+.+|+.+....++........++.+.+...++ +..+.+.||+++++..++++|. .+| .++++|||+.|+|
T Consensus 89 v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~laral~-----~~p-~llllDEPt~~LD 162 (213)
T cd03301 89 VYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIV-----REP-KVFLMDEPLSNLD 162 (213)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHhCChhhCCHHHHHHHHHHHHHh-----cCC-CEEEEcCCcccCC
Confidence 99999775332333332222222222332232 4446778999999999999999 788 5666999999999
Q ss_pred HHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 552 AVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 552 av~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
...+. .+.+.+.++... .+.+.+++|+
T Consensus 163 ~~~~~-~l~~~l~~~~~~---~~~tvi~~sH 189 (213)
T cd03301 163 AKLRV-QMRAELKRLQQR---LGTTTIYVTH 189 (213)
T ss_pred HHHHH-HHHHHHHHHHHH---cCCEEEEEeC
Confidence 87653 444555554321 1467788886
No 98
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.64 E-value=4.5e-16 Score=156.22 Aligned_cols=168 Identities=20% Similarity=0.103 Sum_probs=117.7
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccCC-CcCCc
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHP-AAKHG 475 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~-~~~~t 475 (630)
.+|++++|.+.+| ++++|+||||+||||+++.|++.+.+..|+|.+.+.+..+ ++....++.+... ++.+|
T Consensus 18 ~il~~vs~~i~~G--~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~------~~~~i~~v~q~~~~~~~~t 89 (220)
T cd03293 18 TALEDISLSVEEG--EFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTG------PGPDRGYVFQQDALLPWLT 89 (220)
T ss_pred EEEeceeEEEeCC--cEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcc------ccCcEEEEecccccccCCC
Confidence 4789999999999 9999999999999999999999999999999998877532 1222344444332 44589
Q ss_pred chhhhHhhhccCCCCHHH---HHHHHHHHhhhcC-CCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCcc
Q psy11993 476 GREMVQLFEKGYGKDPAE---IAFRAISHARDMH-IDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNE 551 (630)
Q Consensus 476 v~env~l~~~~~~~d~~~---ia~~ai~~a~~~~-~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~D 551 (630)
+.+|+.+....++..... .+.++++.+.... .+..+-..|||++++..++++|. .+| .++++|||+.|+|
T Consensus 90 v~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~-----~~p-~lllLDEPt~~LD 163 (220)
T cd03293 90 VLDNVALGLELQGVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALA-----VDP-DVLLLDEPFSALD 163 (220)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHH-----cCC-CEEEECCCCCCCC
Confidence 999997654333322222 2333333332221 23446778999999999999999 788 5666999999999
Q ss_pred HHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 552 AVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 552 av~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
...+. .+.+.+.++.. ..+.+.+++|+
T Consensus 164 ~~~~~-~~~~~l~~~~~---~~~~tiii~sH 190 (220)
T cd03293 164 ALTRE-QLQEELLDIWR---ETGKTVLLVTH 190 (220)
T ss_pred HHHHH-HHHHHHHHHHH---HcCCEEEEEec
Confidence 87764 34445554422 12466778886
No 99
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=99.64 E-value=3.2e-16 Score=171.07 Aligned_cols=172 Identities=18% Similarity=0.119 Sum_probs=125.4
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccCC-CcCCc
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHP-AAKHG 475 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~-~~~~t 475 (630)
.+|++++|.+.+| ++++|+||||+||||+++.|++++.+..|+|.+.+.++.+.... +++....++.+... ++.+|
T Consensus 17 ~vL~~vs~~i~~G--eiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~-~~~~~ig~v~q~~~l~~~~t 93 (402)
T PRK09536 17 TVLDGVDLSVREG--SLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSAR-AASRRVASVPQDTSLSFEFD 93 (402)
T ss_pred EEEEeeEEEECCC--CEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHH-HHhcceEEEccCCCCCCCCC
Confidence 5899999999999 99999999999999999999999999999999999888664443 33444555555433 56789
Q ss_pred chhhhHhhhccC----C-CC--HHHHHHHHHHHhhhcC-CCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccc
Q psy11993 476 GREMVQLFEKGY----G-KD--PAEIAFRAISHARDMH-IDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEAL 547 (630)
Q Consensus 476 v~env~l~~~~~----~-~d--~~~ia~~ai~~a~~~~-~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~ 547 (630)
+.+|+.+....| . .. ....+.++++.+...+ .+..+-..|||++++..++++|. .+| .+|++|||+
T Consensus 94 v~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~~LSgGerQRv~IArAL~-----~~P-~iLLLDEPt 167 (402)
T PRK09536 94 VRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLARALA-----QAT-PVLLLDEPT 167 (402)
T ss_pred HHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHH-----cCC-CEEEEECCc
Confidence 999998753222 1 11 1233445555544332 24446678999999999999999 888 677799999
Q ss_pred cCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 548 VGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 548 ~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
.|+|...+.. +.+.++++.. .+.+.|++|+
T Consensus 168 sgLD~~~~~~-l~~lL~~l~~----~g~TIIivsH 197 (402)
T PRK09536 168 ASLDINHQVR-TLELVRRLVD----DGKTAVAAIH 197 (402)
T ss_pred ccCCHHHHHH-HHHHHHHHHh----cCCEEEEEEC
Confidence 9999887643 4455665542 2456666665
No 100
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=99.64 E-value=5.4e-16 Score=157.72 Aligned_cols=174 Identities=20% Similarity=0.189 Sum_probs=120.0
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccH--HHHHHHHHhhhcccCC-CcC
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGA--VEQLRTHVRHLCSLHP-AAK 473 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga--~eQLr~~~~~l~~~~~-~~~ 473 (630)
.+|++++|.+.+| ++++|+|||||||||+++.|++++.+..|+|.+.+.+..+... ...++....++.+... ++.
T Consensus 16 ~il~~vs~~i~~G--e~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 93 (243)
T TIGR02315 16 QALKNINLNINPG--EFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRRRIGMIFQHYNLIER 93 (243)
T ss_pred ceeecceEEEcCC--CEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHhheEEEcCCCccccc
Confidence 4789999999999 9999999999999999999999999999999999887644322 2234444555555433 456
Q ss_pred CcchhhhHhhhccC--------CC-CH--HHHHHHHHHHhhhcC-CCeeeeccccchhchHHHHHHHHhhhhhcCCCeEE
Q psy11993 474 HGGREMVQLFEKGY--------GK-DP--AEIAFRAISHARDMH-IDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLL 541 (630)
Q Consensus 474 ~tv~env~l~~~~~--------~~-d~--~~ia~~ai~~a~~~~-~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VL 541 (630)
+|+.+|+.+..... .. .. ...+.++++.+.... .+..+...|||++++..++++|. .+| .++
T Consensus 94 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~-----~~p-~ll 167 (243)
T TIGR02315 94 LTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRADQLSGGQQQRVAIARALA-----QQP-DLI 167 (243)
T ss_pred ccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHh-----cCC-CEE
Confidence 89999986532110 11 11 112233333322211 24446778999999999999999 888 567
Q ss_pred EEeccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 542 FVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 542 lV~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
++|||+.|+|...+ ..+.+.+.++... .+.+.|++|+
T Consensus 168 llDEPt~~LD~~~~-~~l~~~l~~~~~~---~~~tiii~tH 204 (243)
T TIGR02315 168 LADEPIASLDPKTS-KQVMDYLKRINKE---DGITVIINLH 204 (243)
T ss_pred EEeCCcccCCHHHH-HHHHHHHHHHHHH---cCCEEEEEeC
Confidence 79999999998765 3445556555321 2466778887
No 101
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.64 E-value=7.4e-16 Score=163.77 Aligned_cols=173 Identities=15% Similarity=0.098 Sum_probs=122.4
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCc---------------cHHHHHHHH
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRA---------------GAVEQLRTH 461 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~---------------ga~eQLr~~ 461 (630)
.+|++++|.+.+| ++++|+|+|||||||+++.|++++.+..|+|.+.+.++.+. ....+++..
T Consensus 40 ~~L~~vsl~i~~G--e~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (320)
T PRK13631 40 VALNNISYTFEKN--KIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHELITNPYSKKIKNFKELRRR 117 (320)
T ss_pred cceeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEcccccccccccccccccccchHHHHHhc
Confidence 4899999999999 99999999999999999999999999999999998776331 123345555
Q ss_pred HhhhcccC--CCcCCcchhhhHhhhccCCCCHHHHHHHHHHHhhhcCC-----CeeeeccccchhchHHHHHHHHhhhhh
Q psy11993 462 VRHLCSLH--PAAKHGGREMVQLFEKGYGKDPAEIAFRAISHARDMHI-----DVVLIDTAGRMQDNEPLMRALAKLVKV 534 (630)
Q Consensus 462 ~~~l~~~~--~~~~~tv~env~l~~~~~~~d~~~ia~~ai~~a~~~~~-----D~vlIDTaGr~~~~~~L~~aL~kl~~~ 534 (630)
..++.+.+ .....|+.+|+.+.....+.+.......+.+.+...++ +......||+++++..++++|+
T Consensus 118 ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGqkqRvaiAraL~----- 192 (320)
T PRK13631 118 VSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLERSPFGLSGGQKRRVAIAGILA----- 192 (320)
T ss_pred EEEEEECchhccccchHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCHHHHHHHHHHHHHH-----
Confidence 55555543 23346999999765432233333332333333333333 3346678999999999999999
Q ss_pred cCCCeEEEEeccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 535 NQPDLLLFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 535 ~~Pd~VLlV~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
.+| .+|++|||+.|+|...+. .+.+.+.++.. .+.+.|++|+
T Consensus 193 ~~p-~iLLLDEPtsgLD~~~~~-~l~~~L~~l~~----~g~TiiivtH 234 (320)
T PRK13631 193 IQP-EILIFDEPTAGLDPKGEH-EMMQLILDAKA----NNKTVFVITH 234 (320)
T ss_pred cCC-CEEEEECCccCCCHHHHH-HHHHHHHHHHH----CCCEEEEEec
Confidence 888 566699999999987653 34445554432 2567788886
No 102
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=99.64 E-value=4.6e-16 Score=168.41 Aligned_cols=171 Identities=18% Similarity=0.104 Sum_probs=121.4
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccCC-CcCCc
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHP-AAKHG 475 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~-~~~~t 475 (630)
.+|++++|.+.+| ++++|+|||||||||++++|++++.+..|+|.+.+.+....... +....++.+... ++.+|
T Consensus 17 ~vl~~vsl~i~~G--e~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~---~~~i~~v~Q~~~l~~~~t 91 (369)
T PRK11000 17 VISKDINLDIHEG--EFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPA---ERGVGMVFQSYALYPHLS 91 (369)
T ss_pred EEEeeeEEEEcCC--CEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHh---HCCEEEEeCCcccCCCCC
Confidence 4789999999999 99999999999999999999999999999999998887543322 223445555433 56789
Q ss_pred chhhhHhhhccCCCCHHHH---HHHHHHHhhhcC-CCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCcc
Q psy11993 476 GREMVQLFEKGYGKDPAEI---AFRAISHARDMH-IDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNE 551 (630)
Q Consensus 476 v~env~l~~~~~~~d~~~i---a~~ai~~a~~~~-~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~D 551 (630)
+.+|+.+.....+....+. +.++++.+.... .+..+-..|||++++..++++|. .+| .+|++|||++++|
T Consensus 92 v~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~~~LSgGq~QRvaLAraL~-----~~P-~lLLLDEPts~LD 165 (369)
T PRK11000 92 VAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLV-----AEP-SVFLLDEPLSNLD 165 (369)
T ss_pred HHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHh-----cCC-CEEEEeCCcccCC
Confidence 9999987644333333222 333333333222 23446678999999999999999 888 5666999999999
Q ss_pred HHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 552 AVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 552 av~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
..... .+.+.+.++.. ..+.+.|++|+
T Consensus 166 ~~~~~-~l~~~L~~l~~---~~g~tvI~vTH 192 (369)
T PRK11000 166 AALRV-QMRIEISRLHK---RLGRTMIYVTH 192 (369)
T ss_pred HHHHH-HHHHHHHHHHH---HhCCEEEEEeC
Confidence 87653 34444544432 12466777776
No 103
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.64 E-value=8.9e-16 Score=160.80 Aligned_cols=173 Identities=15% Similarity=0.122 Sum_probs=124.3
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCc---cHHHHHHHHHhhhcccC--CC
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRA---GAVEQLRTHVRHLCSLH--PA 471 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~---ga~eQLr~~~~~l~~~~--~~ 471 (630)
.+|++++|.+.+| ++++|+||||+||||+++.|++.+.+..|+|.+.+.++.+. ....+++....++.+.+ ..
T Consensus 20 ~~l~~vsl~i~~G--e~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l 97 (288)
T PRK13643 20 RALFDIDLEVKKG--SYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQL 97 (288)
T ss_pred cceeeeEEEEcCC--CEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHHHHhhEEEEecCcchhc
Confidence 4899999999999 99999999999999999999999999999999999886321 11234455556665543 33
Q ss_pred cCCcchhhhHhhhccCCCCHHHHH---HHHHHHhhhc-C-CCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEecc
Q psy11993 472 AKHGGREMVQLFEKGYGKDPAEIA---FRAISHARDM-H-IDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEA 546 (630)
Q Consensus 472 ~~~tv~env~l~~~~~~~d~~~ia---~~ai~~a~~~-~-~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~ 546 (630)
...|+.+|+.+....++....+.. .++++.+... . .+..+...||+++++..++++|+ .+| .+|++|||
T Consensus 98 ~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqrvaiA~aL~-----~~p-~illLDEP 171 (288)
T PRK13643 98 FEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGILA-----MEP-EVLVLDEP 171 (288)
T ss_pred ccchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhccCCcccCCHHHHHHHHHHHHHH-----hCC-CEEEEECC
Confidence 446999999876544443333332 3333333332 1 23446678999999999999999 888 56679999
Q ss_pred ccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 547 LVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 547 ~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
+.|+|...+ ..+.+.+.++.. .+.+.+++|+
T Consensus 172 t~gLD~~~~-~~l~~~l~~l~~----~g~til~vtH 202 (288)
T PRK13643 172 TAGLDPKAR-IEMMQLFESIHQ----SGQTVVLVTH 202 (288)
T ss_pred ccCCCHHHH-HHHHHHHHHHHH----CCCEEEEEec
Confidence 999998765 344555655542 2567788887
No 104
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=99.64 E-value=3.9e-16 Score=155.82 Aligned_cols=167 Identities=21% Similarity=0.174 Sum_probs=117.7
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccCCC---cC
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHPA---AK 473 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~~---~~ 473 (630)
.+|++++|.+.+| ++++|+||||+||||+++.|++++.+..|+|.+.+.+.. .++....++.+.... ..
T Consensus 13 ~~l~~isl~i~~G--e~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~------~~~~~i~~v~q~~~~~~~~~ 84 (213)
T cd03235 13 PVLEDVSFEVKPG--EFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLE------KERKRIGYVPQRRSIDRDFP 84 (213)
T ss_pred EeeecceeEEcCC--CEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHH------HHHhheEEeccccccccCCC
Confidence 4789999999999 999999999999999999999999999999999887652 233344455543321 34
Q ss_pred CcchhhhHhhhccCC----C-C--HHHHHHHHHHHhhhcC-CCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEec
Q psy11993 474 HGGREMVQLFEKGYG----K-D--PAEIAFRAISHARDMH-IDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGE 545 (630)
Q Consensus 474 ~tv~env~l~~~~~~----~-d--~~~ia~~ai~~a~~~~-~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E 545 (630)
+|+.+|+.+....+. . . ....+..+++.+.... .+..+...|||++++..++++|. .+| .++++||
T Consensus 85 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~-----~~p-~llllDE 158 (213)
T cd03235 85 ISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQIGELSGGQQQRVLLARALV-----QDP-DLLLLDE 158 (213)
T ss_pred CcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHH-----cCC-CEEEEeC
Confidence 799999876432111 1 1 1122333443332211 23446678999999999999999 788 5666999
Q ss_pred cccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 546 ALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 546 ~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
|+.|+|.... ..+.+.+.++.. .+.+.|++|+
T Consensus 159 Pt~~LD~~~~-~~l~~~l~~~~~----~~~tvi~~sH 190 (213)
T cd03235 159 PFAGVDPKTQ-EDIYELLRELRR----EGMTILVVTH 190 (213)
T ss_pred CcccCCHHHH-HHHHHHHHHHHh----cCCEEEEEeC
Confidence 9999998765 455566666542 2467788887
No 105
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.64 E-value=5.8e-16 Score=153.84 Aligned_cols=171 Identities=15% Similarity=0.115 Sum_probs=119.8
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccC-CCcCCc
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLH-PAAKHG 475 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~-~~~~~t 475 (630)
.+|++++|.+.+| ++++|+||||+||||++..|++.+.+..|+|.+.+.++.... ...+....++.+.. .++.+|
T Consensus 15 ~~l~~vs~~i~~G--e~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~--~~~~~~~~~~~~~~~~~~~~t 90 (204)
T PRK13538 15 ILFSGLSFTLNAG--ELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQR--DEYHQDLLYLGHQPGIKTELT 90 (204)
T ss_pred EEEecceEEECCC--cEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccch--HHhhhheEEeCCccccCcCCc
Confidence 4789999999999 999999999999999999999999999999999887764322 12233333343322 245679
Q ss_pred chhhhHhhhccCCCCHHHHHHHHHHHhhhcC-CCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCccHHH
Q psy11993 476 GREMVQLFEKGYGKDPAEIAFRAISHARDMH-IDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVD 554 (630)
Q Consensus 476 v~env~l~~~~~~~d~~~ia~~ai~~a~~~~-~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~Dav~ 554 (630)
+.+|+.+....++......+..+++.+.... .+..+-+.||+++++..++++|. .+| .++++|||+.++|...
T Consensus 91 v~e~l~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~-----~~p-~llllDEPt~~LD~~~ 164 (204)
T PRK13538 91 ALENLRFYQRLHGPGDDEALWEALAQVGLAGFEDVPVRQLSAGQQRRVALARLWL-----TRA-PLWILDEPFTAIDKQG 164 (204)
T ss_pred HHHHHHHHHHhcCccHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHh-----cCC-CEEEEeCCCccCCHHH
Confidence 9999987643333222222334444433222 24446678999999999999999 788 5666899999999876
Q ss_pred HHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 555 QLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 555 ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
.. .+.+.+.++.. .+.+.|++|+
T Consensus 165 ~~-~l~~~l~~~~~----~~~tiii~sh 187 (204)
T PRK13538 165 VA-RLEALLAQHAE----QGGMVILTTH 187 (204)
T ss_pred HH-HHHHHHHHHHH----CCCEEEEEec
Confidence 53 44555655532 1456777776
No 106
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.64 E-value=1.2e-15 Score=152.93 Aligned_cols=196 Identities=13% Similarity=0.094 Sum_probs=135.2
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccCC---CcC
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHP---AAK 473 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~---~~~ 473 (630)
.+|++|+|++.+| ++++|+|++||||||+++.|+++..+..|.|.+.+...-+..-......-++++.+.++ .|.
T Consensus 21 ~~l~~VS~~i~~G--e~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~~VQmVFQDp~~SLnP~ 98 (252)
T COG1124 21 HALNNVSLEIERG--ETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPR 98 (252)
T ss_pred hhhcceeEEecCC--CEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhccceeEEecCCccccCcc
Confidence 5899999999999 99999999999999999999999999999999999655332211122233444444433 455
Q ss_pred CcchhhhHhhhccCCCCH-HHHHHHHHHHhhhc--CCCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCc
Q psy11993 474 HGGREMVQLFEKGYGKDP-AEIAFRAISHARDM--HIDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGN 550 (630)
Q Consensus 474 ~tv~env~l~~~~~~~d~-~~ia~~ai~~a~~~--~~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~ 550 (630)
+|+.+-+.-.....+.+. ...+.++++..... -++......|||+.|+.+++|||. .+| .+|++|||++++
T Consensus 99 ~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~-----~~P-klLIlDEptSaL 172 (252)
T COG1124 99 RTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALI-----PEP-KLLILDEPTSAL 172 (252)
T ss_pred hhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHHhc-----cCC-CEEEecCchhhh
Confidence 666655533322223222 12233344333221 124556778999999999999999 899 566699999999
Q ss_pred cHHHHHHHHHHHHhhcccCCCCCCeeEEEEcccCCcCccHHHHHHHHHHhCCcEEEEecCCCCc
Q psy11993 551 EAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGTGQTYT 614 (630)
Q Consensus 551 Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK~D~~~~~~G~~ls~~~~~g~PI~fvg~Gq~v~ 614 (630)
|+..|+..+|- +.+..+ .++++-+++|+ ..+.+.-|+. .|...-.|+.+.
T Consensus 173 D~siQa~Ilnl-L~~l~~---~~~lt~l~IsH------dl~~v~~~cd----Ri~Vm~~G~ivE 222 (252)
T COG1124 173 DVSVQAQILNL-LLELKK---ERGLTYLFISH------DLALVEHMCD----RIAVMDNGQIVE 222 (252)
T ss_pred cHHHHHHHHHH-HHHHHH---hcCceEEEEeC------cHHHHHHHhh----heeeeeCCeEEE
Confidence 99999877663 333332 35789999997 2555555555 477788887764
No 107
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.64 E-value=1.4e-15 Score=149.19 Aligned_cols=168 Identities=21% Similarity=0.145 Sum_probs=126.8
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccCC-CcCCc
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHP-AAKHG 475 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~-~~~~t 475 (630)
.+|+++++.+.+| ++.+|+||||+||||+++.|++.+.|.+|+|.+.+.+.-...+. ++..+...+.+... -+..|
T Consensus 15 ~ll~~vsl~~~pG--ev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~-~lA~~raVlpQ~s~laFpFt 91 (259)
T COG4559 15 RLLDGVSLDLRPG--EVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPE-ELARHRAVLPQNSSLAFPFT 91 (259)
T ss_pred eeccCcceeccCC--cEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHH-HHHHHhhhcccCcccccceE
Confidence 4678899999999 99999999999999999999999999999999999887554444 55556666666444 44578
Q ss_pred chhhhHhhhccC--CCC---HHHHHHHHHHHhhhcCCCee-eeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccC
Q psy11993 476 GREMVQLFEKGY--GKD---PAEIAFRAISHARDMHIDVV-LIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVG 549 (630)
Q Consensus 476 v~env~l~~~~~--~~d---~~~ia~~ai~~a~~~~~D~v-lIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g 549 (630)
+.+.|.+....+ +.. ...++..++......++.-. .-..||+.+++..++|.|+.+-.......+||+|||++.
T Consensus 92 v~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R~y~~LSGGEqQRVqlARvLaQl~~~v~~~r~L~LDEPtsa 171 (259)
T COG4559 92 VQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRDYRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSA 171 (259)
T ss_pred HHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhccchhhcCchHHHHHHHHHHHHHccCCCCCCceEEecCCccc
Confidence 999898876555 333 33445666655544444333 335699999999999999977554433258999999999
Q ss_pred ccHHHHHHHHHHHHhhccc
Q psy11993 550 NEAVDQLVKFNNAMADHSL 568 (630)
Q Consensus 550 ~Dav~ql~~f~~~l~~~~~ 568 (630)
+|...|...++ ..+++..
T Consensus 172 LDi~HQ~~tl~-laR~la~ 189 (259)
T COG4559 172 LDIAHQHHTLR-LARQLAR 189 (259)
T ss_pred cchHHHHHHHH-HHHHHHh
Confidence 99999877664 5566664
No 108
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=99.64 E-value=9.9e-16 Score=155.83 Aligned_cols=173 Identities=15% Similarity=0.165 Sum_probs=119.9
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccCC-CcCCc
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHP-AAKHG 475 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~-~~~~t 475 (630)
.+|++++|.+.+| ++++|+||||+||||+++.|++.+.+..|+|.+.+.++.+....+..+....++.+... ++.+|
T Consensus 17 ~~l~~~sl~i~~G--e~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 94 (241)
T PRK10895 17 RVVEDVSLTVNSG--EIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGIGYLPQEASIFRRLS 94 (241)
T ss_pred EEEeeeeEEEcCC--cEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhCeEEeccCCcccccCc
Confidence 4889999999999 99999999999999999999999999999999998876443332223333445554433 44579
Q ss_pred chhhhHhhhccC-CCCHHHHHHHHHHHhhhcCC----CeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCc
Q psy11993 476 GREMVQLFEKGY-GKDPAEIAFRAISHARDMHI----DVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGN 550 (630)
Q Consensus 476 v~env~l~~~~~-~~d~~~ia~~ai~~a~~~~~----D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~ 550 (630)
+.+|+.+..... ..++......+.+.+...++ +..+-..||+++++..++++|. .+| .+|++|||+.++
T Consensus 95 v~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~-----~~p-~llllDEPt~~L 168 (241)
T PRK10895 95 VYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARALA-----ANP-KFILLDEPFAGV 168 (241)
T ss_pred HHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCHHHhhcchhhCCHHHHHHHHHHHHHh-----cCC-CEEEEcCCcccC
Confidence 999997653222 12222222222222333233 3345678999999999999999 788 566699999999
Q ss_pred cHHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 551 EAVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 551 Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
|...+ ..+.+.+.++.. .+.+.|++|+
T Consensus 169 D~~~~-~~l~~~l~~~~~----~g~tiii~sH 195 (241)
T PRK10895 169 DPISV-IDIKRIIEHLRD----SGLGVLITDH 195 (241)
T ss_pred CHHHH-HHHHHHHHHHHh----cCCEEEEEEc
Confidence 98765 334445555432 2466778876
No 109
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=99.63 E-value=9.5e-16 Score=167.24 Aligned_cols=174 Identities=18% Similarity=0.189 Sum_probs=122.8
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHH--H-HHHHhhhcccCC-Cc
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQ--L-RTHVRHLCSLHP-AA 472 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQ--L-r~~~~~l~~~~~-~~ 472 (630)
.+|++++|.+.+| ++++|+|||||||||++++|++++.|..|+|.+.+.|+......+. + +....++.+... ++
T Consensus 42 ~~L~~isl~i~~G--ei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~ 119 (400)
T PRK10070 42 LGVKDASLAIEEG--EIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMP 119 (400)
T ss_pred EEEEeEEEEEcCC--CEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCC
Confidence 4789999999999 9999999999999999999999999999999999988754433211 1 122344444333 55
Q ss_pred CCcchhhhHhhhccCCCCHHHH---HHHHHHHhhhcC-CCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEecccc
Q psy11993 473 KHGGREMVQLFEKGYGKDPAEI---AFRAISHARDMH-IDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALV 548 (630)
Q Consensus 473 ~~tv~env~l~~~~~~~d~~~i---a~~ai~~a~~~~-~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~ 548 (630)
.+|+.+|+.+....++...... +.++++.+.... .+..+-..|||++++..++++|. .+| .+|++|||+.
T Consensus 120 ~~Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~~~~LSgGq~QRv~LArAL~-----~~P-~iLLLDEPts 193 (400)
T PRK10070 120 HMTVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYPDELSGGMRQRVGLARALA-----INP-DILLMDEAFS 193 (400)
T ss_pred CCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhcCcccCCHHHHHHHHHHHHHh-----cCC-CEEEEECCCc
Confidence 6899999987644333333222 333444333322 24446678999999999999999 888 5667999999
Q ss_pred CccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 549 GNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 549 g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
++|...+. .+.+.+.++.. ..+.+.|++|+
T Consensus 194 ~LD~~~r~-~l~~~L~~l~~---~~g~TIIivTH 223 (400)
T PRK10070 194 ALDPLIRT-EMQDELVKLQA---KHQRTIVFISH 223 (400)
T ss_pred cCCHHHHH-HHHHHHHHHHH---HCCCeEEEEEC
Confidence 99987654 44445554432 12466778887
No 110
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.63 E-value=8.5e-16 Score=156.53 Aligned_cols=173 Identities=16% Similarity=0.116 Sum_probs=121.9
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccCC-CcCCc
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHP-AAKHG 475 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~-~~~~t 475 (630)
.+|++++|.+.+| ++++|+||||+||||+++.|++.+.+..|+|.+.+.++.+... ..++....++.+... ++.+|
T Consensus 15 ~~l~~is~~i~~G--e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~-~~~~~~i~~~~q~~~~~~~~t 91 (242)
T cd03295 15 KAVNNLNLEIAKG--EFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDP-VELRRKIGYVIQQIGLFPHMT 91 (242)
T ss_pred eEeeeeEEEECCC--CEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCCh-HHhhcceEEEccCccccCCCc
Confidence 4789999999999 9999999999999999999999999999999998877644332 233444555555433 44689
Q ss_pred chhhhHhhhccCCCCHHH---HHHHHHHHhhhcC---CCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccC
Q psy11993 476 GREMVQLFEKGYGKDPAE---IAFRAISHARDMH---IDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVG 549 (630)
Q Consensus 476 v~env~l~~~~~~~d~~~---ia~~ai~~a~~~~---~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g 549 (630)
+.+|+.+.....+.+... .+.++++.+.... .+..+...||+++++..++++|. .+| .++++|||+.|
T Consensus 92 v~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~laral~-----~~p-~llllDEPt~~ 165 (242)
T cd03295 92 VEENIALVPKLLKWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALA-----ADP-PLLLMDEPFGA 165 (242)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHHHHHh-----cCC-CEEEecCCccc
Confidence 999997754333323222 2333444333321 23345678999999999999999 788 56669999999
Q ss_pred ccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 550 NEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 550 ~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
+|.... ..+.+.+.++... .+.+.|++|+
T Consensus 166 LD~~~~-~~l~~~L~~~~~~---~g~tvii~sH 194 (242)
T cd03295 166 LDPITR-DQLQEEFKRLQQE---LGKTIVFVTH 194 (242)
T ss_pred CCHHHH-HHHHHHHHHHHHH---cCCEEEEEec
Confidence 998664 4455556555321 2456778776
No 111
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=99.63 E-value=9.8e-16 Score=161.83 Aligned_cols=173 Identities=16% Similarity=0.134 Sum_probs=123.2
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCc-----------------------c
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRA-----------------------G 453 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~-----------------------g 453 (630)
.+|++++|.+.+| ++++|+||||+||||+++.|++++.+..|+|.+.+.+.... .
T Consensus 21 ~~l~~vsl~i~~G--e~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (305)
T PRK13651 21 KALDNVSVEINQG--EFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKKIK 98 (305)
T ss_pred cceeeeEEEEeCC--CEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceecccccccccccccccccccccccccccc
Confidence 4899999999999 99999999999999999999999999999999976554210 0
Q ss_pred HHHHHHHHHhhhcccC--CCcCCcchhhhHhhhccCCCCHHHHHHHHHHHhhhcCC-----CeeeeccccchhchHHHHH
Q psy11993 454 AVEQLRTHVRHLCSLH--PAAKHGGREMVQLFEKGYGKDPAEIAFRAISHARDMHI-----DVVLIDTAGRMQDNEPLMR 526 (630)
Q Consensus 454 a~eQLr~~~~~l~~~~--~~~~~tv~env~l~~~~~~~d~~~ia~~ai~~a~~~~~-----D~vlIDTaGr~~~~~~L~~ 526 (630)
....++....++.+.. .+...|+.+|+.+.....+.++.+...++.+.+...++ +..+.+.||+++++..+++
T Consensus 99 ~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGqkqrvalA~ 178 (305)
T PRK13651 99 KIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQRSPFELSGGQKRRVALAG 178 (305)
T ss_pred hHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHHHH
Confidence 1223444555555532 34457999999875444444444333333333333333 3346778999999999999
Q ss_pred HHHhhhhhcCCCeEEEEeccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 527 ALAKLVKVNQPDLLLFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 527 aL~kl~~~~~Pd~VLlV~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
+|+ .+| .+|++|||+.++|...+ ..+.+.+.++.. .+.+.|++|+
T Consensus 179 aL~-----~~P-~lLlLDEPt~~LD~~~~-~~l~~~l~~l~~----~g~tiiivtH 223 (305)
T PRK13651 179 ILA-----MEP-DFLVFDEPTAGLDPQGV-KEILEIFDNLNK----QGKTIILVTH 223 (305)
T ss_pred HHH-----hCC-CEEEEeCCCCCCCHHHH-HHHHHHHHHHHH----CCCEEEEEee
Confidence 999 888 56669999999998764 344555555432 2577788887
No 112
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=99.63 E-value=9.9e-16 Score=154.08 Aligned_cols=174 Identities=17% Similarity=0.111 Sum_probs=120.2
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccH--HHHHHHHHhhhcccC---CC
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGA--VEQLRTHVRHLCSLH---PA 471 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga--~eQLr~~~~~l~~~~---~~ 471 (630)
.+|++++|.+.+| ++++|+||||+||||+++.|++.+.+..|+|.+.+.++.+... ...++....++.+.. ..
T Consensus 19 ~~l~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 96 (228)
T cd03257 19 KALDDVSFSIKKG--ETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSLN 96 (228)
T ss_pred eeecCceeEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHhhccEEEEecCchhhcC
Confidence 4789999999999 9999999999999999999999999999999999887754332 123334444555443 23
Q ss_pred cCCcchhhhHhhhccCCCC-HHHHH----HHHHHHhhhc--CCCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEe
Q psy11993 472 AKHGGREMVQLFEKGYGKD-PAEIA----FRAISHARDM--HIDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVG 544 (630)
Q Consensus 472 ~~~tv~env~l~~~~~~~d-~~~ia----~~ai~~a~~~--~~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~ 544 (630)
+.+|+.+|+.+........ ..... .++++.+... ..+..+...||+++++..++++|. .+| .+|++|
T Consensus 97 ~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~-----~~p-~lllLD 170 (228)
T cd03257 97 PRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARALA-----LNP-KLLIAD 170 (228)
T ss_pred CcCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCChhHhhCCchhcCHHHHHHHHHHHHHh-----cCC-CEEEec
Confidence 4689999987643222211 11111 1233332221 123446778999999999999999 788 566699
Q ss_pred ccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 545 EALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 545 E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
||+.++|...+ ..+.+.+.++... .+.+.|++|+
T Consensus 171 EPt~~LD~~~~-~~l~~~l~~~~~~---~~~tii~~sH 204 (228)
T cd03257 171 EPTSALDVSVQ-AQILDLLKKLQEE---LGLTLLFITH 204 (228)
T ss_pred CCCCCCCHHHH-HHHHHHHHHHHHH---cCCEEEEEeC
Confidence 99999998764 4555666655421 1456778877
No 113
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=99.63 E-value=6.9e-16 Score=167.39 Aligned_cols=171 Identities=17% Similarity=0.140 Sum_probs=122.6
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccCC-CcCCc
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHP-AAKHG 475 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~-~~~~t 475 (630)
.+|++++|++.+| ++++|+|||||||||++++||+++.+..|+|.+.+.+....... ++...++.+... ++.+|
T Consensus 33 ~~l~~vsl~i~~G--e~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~---~r~ig~vfQ~~~lfp~lt 107 (377)
T PRK11607 33 HAVDDVSLTIYKG--EIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPY---QRPINMMFQSYALFPHMT 107 (377)
T ss_pred EEEeeeEEEEcCC--CEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHH---HCCEEEEeCCCccCCCCC
Confidence 4788999999999 99999999999999999999999999999999998877543321 334445555433 66789
Q ss_pred chhhhHhhhccCCCCHHHHHHHHHHHhhhcCC----CeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCcc
Q psy11993 476 GREMVQLFEKGYGKDPAEIAFRAISHARDMHI----DVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNE 551 (630)
Q Consensus 476 v~env~l~~~~~~~d~~~ia~~ai~~a~~~~~----D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~D 551 (630)
+.+|+.+.....+....+...++.+.++..++ +...-..||+++++..|+++|. .+| .+|++|||+.++|
T Consensus 108 v~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~LSgGq~QRVaLARAL~-----~~P-~lLLLDEP~s~LD 181 (377)
T PRK11607 108 VEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLA-----KRP-KLLLLDEPMGALD 181 (377)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHh-----cCC-CEEEEeCCcccCC
Confidence 99999876543333333333333333333232 3445678999999999999999 888 6777999999999
Q ss_pred HHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 552 AVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 552 av~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
...+. .+.+.+.++.. ..+++.|++|+
T Consensus 182 ~~~r~-~l~~~l~~l~~---~~g~tii~vTH 208 (377)
T PRK11607 182 KKLRD-RMQLEVVDILE---RVGVTCVMVTH 208 (377)
T ss_pred HHHHH-HHHHHHHHHHH---hcCCEEEEEcC
Confidence 77543 33334444332 12577888887
No 114
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.63 E-value=1.2e-15 Score=158.80 Aligned_cols=173 Identities=17% Similarity=0.111 Sum_probs=123.0
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccC--CCcCC
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLH--PAAKH 474 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~--~~~~~ 474 (630)
.+|++++|.+.+| ++++|+|+||+||||+++.|++.+.++.|+|.+.+.+..+... ..++....++.+.. .+...
T Consensus 18 ~~l~~vsl~i~~G--e~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~-~~~~~~i~~v~q~~~~~~~~~ 94 (277)
T PRK13652 18 EALNNINFIAPRN--SRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENI-REVRKFVGLVFQNPDDQIFSP 94 (277)
T ss_pred ceeeEeEEEEcCC--CEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCH-HHHHhheEEEecCcccccccc
Confidence 3799999999999 9999999999999999999999999999999999887644332 23444455555543 23457
Q ss_pred cchhhhHhhhccCCCCHHHH---HHHHHHHhhhcC-CCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCc
Q psy11993 475 GGREMVQLFEKGYGKDPAEI---AFRAISHARDMH-IDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGN 550 (630)
Q Consensus 475 tv~env~l~~~~~~~d~~~i---a~~ai~~a~~~~-~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~ 550 (630)
|+.+|+.+.....+.++... +.++++.+.... .+..+.+.||+++++..++++|. .+| .+|++|||+.|+
T Consensus 95 tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrl~laraL~-----~~p-~llilDEPt~gL 168 (277)
T PRK13652 95 TVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIA-----MEP-QVLVLDEPTAGL 168 (277)
T ss_pred cHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHH-----cCC-CEEEEeCCcccC
Confidence 99999976443333344332 233333322221 24456788999999999999999 888 566699999999
Q ss_pred cHHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 551 EAVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 551 Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
|...+ ..|.+.+.++... .+.+.+++|+
T Consensus 169 D~~~~-~~l~~~l~~l~~~---~g~tvli~tH 196 (277)
T PRK13652 169 DPQGV-KELIDFLNDLPET---YGMTVIFSTH 196 (277)
T ss_pred CHHHH-HHHHHHHHHHHHh---cCCEEEEEec
Confidence 98764 4455556554321 2467778776
No 115
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.63 E-value=1e-15 Score=160.52 Aligned_cols=174 Identities=16% Similarity=0.127 Sum_probs=123.8
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCC---ccHHHHHHHHHhhhcccC--CC
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFR---AGAVEQLRTHVRHLCSLH--PA 471 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R---~ga~eQLr~~~~~l~~~~--~~ 471 (630)
.+|++++|.+.+| ++++|+||||+||||+++.|++++.+..|.|.+.+.++.. .......+....++.+.+ .+
T Consensus 21 ~~L~~vsl~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l 98 (290)
T PRK13634 21 RALYDVNVSIPSG--SYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEHQL 98 (290)
T ss_pred cceeeEEEEEcCC--CEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhhEEEEeeCchhhh
Confidence 4899999999999 9999999999999999999999999999999999887632 111223344455555543 23
Q ss_pred cCCcchhhhHhhhccCCCCHHHH---HHHHHHHhhhc-C-CCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEecc
Q psy11993 472 AKHGGREMVQLFEKGYGKDPAEI---AFRAISHARDM-H-IDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEA 546 (630)
Q Consensus 472 ~~~tv~env~l~~~~~~~d~~~i---a~~ai~~a~~~-~-~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~ 546 (630)
...|+.+|+.+.....+.++... +.++++.+... . .+..+-..||+++++..++++|+ .+| .+|++|||
T Consensus 99 ~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lAraL~-----~~P-~llllDEP 172 (290)
T PRK13634 99 FEETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVAIAGVLA-----MEP-EVLVLDEP 172 (290)
T ss_pred hhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhhhCCcccCCHHHHHHHHHHHHHH-----cCC-CEEEEECC
Confidence 35799999987544333344332 33344444332 1 23446778999999999999999 888 56679999
Q ss_pred ccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 547 LVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 547 ~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
+.|+|...+. .+.+.+.++.. ..+.+.|++|+
T Consensus 173 t~~LD~~~~~-~l~~~L~~l~~---~~g~tviiitH 204 (290)
T PRK13634 173 TAGLDPKGRK-EMMEMFYKLHK---EKGLTTVLVTH 204 (290)
T ss_pred cccCCHHHHH-HHHHHHHHHHH---hcCCEEEEEeC
Confidence 9999987754 44555655532 12567788876
No 116
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=99.63 E-value=1.2e-15 Score=153.84 Aligned_cols=173 Identities=14% Similarity=0.102 Sum_probs=121.3
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccCCCcCCcc
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHPAAKHGG 476 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~~~~~tv 476 (630)
.+|++++|.+.+| ++++|+||||+||||+++.|++.+.+..|+|.+.+.++.+.... .++....++.+...+...|+
T Consensus 21 ~il~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~-~~~~~i~~~~q~~~l~~~tv 97 (225)
T PRK10247 21 KILNNISFSLRAG--EFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPE-IYRQQVSYCAQTPTLFGDTV 97 (225)
T ss_pred eeeeccEEEEcCC--CEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHH-HHHhccEEEecccccccccH
Confidence 4889999999999 99999999999999999999999999999999988776554432 34444555555433334699
Q ss_pred hhhhHhhhccCCCC-HHHHHHHHHHHhhhcC--CCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCccHH
Q psy11993 477 REMVQLFEKGYGKD-PAEIAFRAISHARDMH--IDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAV 553 (630)
Q Consensus 477 ~env~l~~~~~~~d-~~~ia~~ai~~a~~~~--~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~Dav 553 (630)
.+|+.+....+... ....+..+++.+.... .+..+...||+++++..++++|. .+| .++++|||+.|+|..
T Consensus 98 ~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~-----~~p-~llllDEPt~~LD~~ 171 (225)
T PRK10247 98 YDNLIFPWQIRNQQPDPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQ-----FMP-KVLLLDEITSALDES 171 (225)
T ss_pred HHHHHhHHhhcCCChHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHh-----cCC-CEEEEeCCcccCCHH
Confidence 99987643222221 1222333444333311 23446778999999999999999 788 566689999999987
Q ss_pred HHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 554 DQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 554 ~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
.+ ..+.+.+.++... .+.+.|++|+
T Consensus 172 ~~-~~l~~~l~~~~~~---~~~tvii~sh 196 (225)
T PRK10247 172 NK-HNVNEIIHRYVRE---QNIAVLWVTH 196 (225)
T ss_pred HH-HHHHHHHHHHHHh---cCCEEEEEEC
Confidence 64 4455556555321 2456777776
No 117
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.63 E-value=1.4e-15 Score=158.91 Aligned_cols=173 Identities=15% Similarity=0.093 Sum_probs=123.7
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcC---CeEEEeecccCCccHHHHHHHHHhhhcccC--CC
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENN---LNVLIAACDTFRAGAVEQLRTHVRHLCSLH--PA 471 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~g---gkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~--~~ 471 (630)
.+|++++|.+.+| ++++|+||||+||||++..|++++.+.. |+|.+.+.+..+.... .++.+..++.+.. .+
T Consensus 21 ~~l~~v~l~i~~G--e~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~-~~~~~ig~v~q~~~~~~ 97 (282)
T PRK13640 21 PALNDISFSIPRG--SWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVW-DIREKVGIVFQNPDNQF 97 (282)
T ss_pred cceeeEEEEEcCC--CEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHH-HHHhheEEEEECHHHhh
Confidence 4889999999999 9999999999999999999999998876 8999998877543332 4455556666543 35
Q ss_pred cCCcchhhhHhhhccCCCCHHHHHHHHHHHhhhcCC----CeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccc
Q psy11993 472 AKHGGREMVQLFEKGYGKDPAEIAFRAISHARDMHI----DVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEAL 547 (630)
Q Consensus 472 ~~~tv~env~l~~~~~~~d~~~ia~~ai~~a~~~~~----D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~ 547 (630)
+..|+.+|+.+....++..+.+...++.+.+...++ +..+...||+++++..++++|. .+| .+|++|||+
T Consensus 98 ~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~G~~qrv~laral~-----~~P-~llllDEPt 171 (282)
T PRK13640 98 VGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGILA-----VEP-KIIILDEST 171 (282)
T ss_pred ccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHH-----cCC-CEEEEECCc
Confidence 568999999765433344443332233333333232 4456788999999999999999 888 566699999
Q ss_pred cCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 548 VGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 548 ~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
.|+|...+. .+.+.+.++.. ..+.+.+++|+
T Consensus 172 ~gLD~~~~~-~l~~~l~~l~~---~~g~tvli~tH 202 (282)
T PRK13640 172 SMLDPAGKE-QILKLIRKLKK---KNNLTVISITH 202 (282)
T ss_pred ccCCHHHHH-HHHHHHHHHHH---hcCCEEEEEec
Confidence 999987754 44445555432 12467777776
No 118
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=99.63 E-value=7.6e-16 Score=165.76 Aligned_cols=171 Identities=18% Similarity=0.134 Sum_probs=122.4
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccCC-CcCCc
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHP-AAKHG 475 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~-~~~~t 475 (630)
.+|++++|.+.+| ++++|+|||||||||++++|++++.++.|+|.+.+.|+..... .+....++.+... ++.+|
T Consensus 16 ~~l~~isl~i~~G--e~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~---~~r~i~~v~Q~~~l~p~~t 90 (353)
T PRK10851 16 QVLNDISLDIPSG--QMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHA---RDRKVGFVFQHYALFRHMT 90 (353)
T ss_pred EEEEEeEEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCH---HHCCEEEEecCcccCCCCc
Confidence 4789999999999 9999999999999999999999999999999999988743322 2233445554433 56789
Q ss_pred chhhhHhhhcc----CCCCHHHH---HHHHHHHhhhcC-CCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccc
Q psy11993 476 GREMVQLFEKG----YGKDPAEI---AFRAISHARDMH-IDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEAL 547 (630)
Q Consensus 476 v~env~l~~~~----~~~d~~~i---a~~ai~~a~~~~-~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~ 547 (630)
+.+|+.+.... ...+..+. +.++++.+...+ .+..+...||+++++..++++|. .+| .+|++|||+
T Consensus 91 v~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGq~QRvalArAL~-----~~P-~llLLDEP~ 164 (353)
T PRK10851 91 VFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARALA-----VEP-QILLLDEPF 164 (353)
T ss_pred HHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHh-----cCC-CEEEEeCCC
Confidence 99999875432 12233332 333344333322 24446778999999999999999 888 566699999
Q ss_pred cCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 548 VGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 548 ~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
.++|...+. .+.+.+.++.. ..+++.+++|+
T Consensus 165 s~LD~~~r~-~l~~~L~~l~~---~~g~tii~vTH 195 (353)
T PRK10851 165 GALDAQVRK-ELRRWLRQLHE---ELKFTSVFVTH 195 (353)
T ss_pred ccCCHHHHH-HHHHHHHHHHH---hcCCEEEEEeC
Confidence 999987653 34445554432 22577788887
No 119
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.63 E-value=1.3e-15 Score=159.39 Aligned_cols=174 Identities=14% Similarity=0.137 Sum_probs=123.0
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCcc---HHHHHHHHHhhhcccC--CC
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAG---AVEQLRTHVRHLCSLH--PA 471 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~g---a~eQLr~~~~~l~~~~--~~ 471 (630)
.+|++++|.+.+| ++++|+|||||||||+++.|++.+.++.|+|.+.+.++.... ....++....++.+.+ .+
T Consensus 21 ~~l~~vsl~i~~G--e~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l 98 (286)
T PRK13646 21 QAIHDVNTEFEQG--KYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRPVRKRIGMVFQFPESQL 98 (286)
T ss_pred CceeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhheEEEecChHhcc
Confidence 4899999999999 999999999999999999999999999999999988774321 1234455555655543 23
Q ss_pred cCCcchhhhHhhhccCCCCHHHHHHHHHHHhhhcCC-----CeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEecc
Q psy11993 472 AKHGGREMVQLFEKGYGKDPAEIAFRAISHARDMHI-----DVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEA 546 (630)
Q Consensus 472 ~~~tv~env~l~~~~~~~d~~~ia~~ai~~a~~~~~-----D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~ 546 (630)
...|+.+|+.+.....+.+.......+.+.+...++ +..+-+.||+++++..++++|+ .+| .++++|||
T Consensus 99 ~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~laraL~-----~~p-~illlDEP 172 (286)
T PRK13646 99 FEDTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSILA-----MNP-DIIVLDEP 172 (286)
T ss_pred chhhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHH-----hCC-CEEEEECC
Confidence 345999999765433333333322223233333333 3346778999999999999999 888 56669999
Q ss_pred ccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 547 LVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 547 ~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
+.|+|...+. .+.+.+.++.. ..+.+.+++|+
T Consensus 173 t~~LD~~~~~-~l~~~l~~l~~---~~g~tvl~vtH 204 (286)
T PRK13646 173 TAGLDPQSKR-QVMRLLKSLQT---DENKTIILVSH 204 (286)
T ss_pred cccCCHHHHH-HHHHHHHHHHH---hCCCEEEEEec
Confidence 9999987764 34445554432 12577788886
No 120
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=99.63 E-value=1.6e-15 Score=152.95 Aligned_cols=174 Identities=21% Similarity=0.156 Sum_probs=118.9
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHH--HHH-HHHhhhcccCC-Cc
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVE--QLR-THVRHLCSLHP-AA 472 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~e--QLr-~~~~~l~~~~~-~~ 472 (630)
.+|++++|.+.+| ++++|+||||+||||+++.|++++.+..|+|.+.+.+.......+ ..+ ....++.+... ++
T Consensus 24 ~~l~~~s~~i~~G--e~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~l~~ 101 (228)
T PRK10584 24 SILTGVELVVKRG--ETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKLRAKHVGFVFQSFMLIP 101 (228)
T ss_pred EEEeccEEEEcCC--CEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHHHHhheEEEEEcccccCC
Confidence 4789999999999 999999999999999999999999999999999887764432211 111 23344444332 44
Q ss_pred CCcchhhhHhhhccCCCCHHH---HHHHHHHHhhhcC-CCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEecccc
Q psy11993 473 KHGGREMVQLFEKGYGKDPAE---IAFRAISHARDMH-IDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALV 548 (630)
Q Consensus 473 ~~tv~env~l~~~~~~~d~~~---ia~~ai~~a~~~~-~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~ 548 (630)
.+|+.+|+.+....++..... .+.++++.+.... .+..+...|||++++..++++|. .+| .++++|||+.
T Consensus 102 ~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrl~la~al~-----~~p-~llllDEPt~ 175 (228)
T PRK10584 102 TLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALARAFN-----GRP-DVLFADEPTG 175 (228)
T ss_pred CcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHh-----cCC-CEEEEeCCCC
Confidence 579999987643222222222 2233333332221 23346678999999999999999 788 5667999999
Q ss_pred CccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 549 GNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 549 g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
|+|...+ ..+.+.+.++... .+.+.|++|+
T Consensus 176 ~LD~~~~-~~l~~~l~~~~~~---~~~tii~~sH 205 (228)
T PRK10584 176 NLDRQTG-DKIADLLFSLNRE---HGTTLILVTH 205 (228)
T ss_pred CCCHHHH-HHHHHHHHHHHHh---cCCEEEEEec
Confidence 9997764 4455566555321 2456777776
No 121
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.63 E-value=1.3e-15 Score=159.17 Aligned_cols=174 Identities=17% Similarity=0.084 Sum_probs=123.4
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCc-cHHHHHHHHHhhhcccC--CCcC
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRA-GAVEQLRTHVRHLCSLH--PAAK 473 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~-ga~eQLr~~~~~l~~~~--~~~~ 473 (630)
.+|++++|.+.+| ++++|+||||+||||+++.|++++.+..|+|.+.+.|.... .....++....++.+.+ ....
T Consensus 20 ~~l~~vs~~i~~G--e~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~ 97 (283)
T PRK13636 20 HALKGININIKKG--EVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRESVGMVFQDPDNQLFS 97 (283)
T ss_pred eeeeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHhhEEEEecCcchhhcc
Confidence 4899999999999 99999999999999999999999999999999999886321 12234555566666643 2345
Q ss_pred CcchhhhHhhhccCCCCHHHH---HHHHHHHhhhcC-CCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccC
Q psy11993 474 HGGREMVQLFEKGYGKDPAEI---AFRAISHARDMH-IDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVG 549 (630)
Q Consensus 474 ~tv~env~l~~~~~~~d~~~i---a~~ai~~a~~~~-~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g 549 (630)
.|+.+|+.+....++...... +..+++...... .+..+...||+++++..++++|. .+| .+|++|||+.|
T Consensus 98 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrl~laraL~-----~~p-~lLilDEPt~g 171 (283)
T PRK13636 98 ASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLV-----MEP-KVLVLDEPTAG 171 (283)
T ss_pred ccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhhhCCcccCCHHHHHHHHHHHHHH-----cCC-CEEEEeCCccC
Confidence 799999976543333332222 233333333221 24557788999999999999999 788 56669999999
Q ss_pred ccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 550 NEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 550 ~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
+|...+. .|.+.+..+... .+.+.+++|+
T Consensus 172 LD~~~~~-~l~~~l~~l~~~---~g~tillvsH 200 (283)
T PRK13636 172 LDPMGVS-EIMKLLVEMQKE---LGLTIIIATH 200 (283)
T ss_pred CCHHHHH-HHHHHHHHHHHh---CCCEEEEEec
Confidence 9987653 445555554321 2466777776
No 122
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=99.63 E-value=1.5e-15 Score=154.38 Aligned_cols=173 Identities=17% Similarity=0.111 Sum_probs=121.0
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCcc-HHHHHHHHHhhhcccCC-CcCC
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAG-AVEQLRTHVRHLCSLHP-AAKH 474 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~g-a~eQLr~~~~~l~~~~~-~~~~ 474 (630)
.+|++++|.+.+| ++++|+||||+||||+++.|++.+.+..|+|.+.+.++.+.. ....++....++.+... ++.+
T Consensus 15 ~il~~~s~~i~~G--e~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 92 (240)
T PRK09493 15 QVLHNIDLNIDQG--EVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQEAGMVFQQFYLFPHL 92 (240)
T ss_pred EEeeeeeEEEcCC--cEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhceEEEecccccCCCC
Confidence 4789999999999 999999999999999999999999999999999988765422 12233444555555433 4568
Q ss_pred cchhhhHhhhc-cCCCCHHHH---HHHHHHHhhhcC-CCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccC
Q psy11993 475 GGREMVQLFEK-GYGKDPAEI---AFRAISHARDMH-IDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVG 549 (630)
Q Consensus 475 tv~env~l~~~-~~~~d~~~i---a~~ai~~a~~~~-~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g 549 (630)
|+.+|+.+... ..+.+.... +.++++.+.... .+..+-..||+++++..++++|. .+| .++++|||+.|
T Consensus 93 tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~-----~~p-~llllDEP~~~ 166 (240)
T PRK09493 93 TALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALA-----VKP-KLMLFDEPTSA 166 (240)
T ss_pred cHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHhcChhhcCHHHHHHHHHHHHHh-----cCC-CEEEEcCCccc
Confidence 99999976431 122222222 233333322211 23445678999999999999999 788 56779999999
Q ss_pred ccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 550 NEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 550 ~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
+|...+ ..+.+.+.++.. .+.+.|++|+
T Consensus 167 LD~~~~-~~l~~~l~~~~~----~~~tiii~sH 194 (240)
T PRK09493 167 LDPELR-HEVLKVMQDLAE----EGMTMVIVTH 194 (240)
T ss_pred CCHHHH-HHHHHHHHHHHH----cCCEEEEEeC
Confidence 998765 345556665542 2466778876
No 123
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=99.63 E-value=1.4e-15 Score=154.60 Aligned_cols=173 Identities=17% Similarity=0.168 Sum_probs=120.0
Q ss_pred hhhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhc-cc-CCCcC
Q psy11993 396 VDILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLC-SL-HPAAK 473 (630)
Q Consensus 396 ~~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~-~~-~~~~~ 473 (630)
..+|++++|.+.+| ++++|+||||+||||+++.|++.+.+..|+|.+.+.+..... ..++....++. +. ..++.
T Consensus 34 ~~il~~vs~~i~~G--e~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~--~~~~~~i~~~~~~~~~~~~~ 109 (236)
T cd03267 34 VEALKGISFTIEKG--EIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRR--KKFLRRIGVVFGQKTQLWWD 109 (236)
T ss_pred eeeeeceeEEEcCC--CEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEccccc--hhhcccEEEEcCCccccCCC
Confidence 35899999999999 999999999999999999999999999999999887653321 12233334432 22 22456
Q ss_pred CcchhhhHhhhccCCCCHHHH---HHHHHHHhhhcC-CCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccC
Q psy11993 474 HGGREMVQLFEKGYGKDPAEI---AFRAISHARDMH-IDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVG 549 (630)
Q Consensus 474 ~tv~env~l~~~~~~~d~~~i---a~~ai~~a~~~~-~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g 549 (630)
+|+.+|+.+....++...... +..+++...... .+..+-+.||+++++..++++|. .+| .++++|||+.|
T Consensus 110 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~-----~~p-~llllDEPt~~ 183 (236)
T cd03267 110 LPVIDSFYLLAAIYDLPPARFKKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALL-----HEP-EILFLDEPTIG 183 (236)
T ss_pred CcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHh-----cCC-CEEEEcCCCCC
Confidence 899999877544333333322 222333222211 24456778999999999999999 788 56679999999
Q ss_pred ccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 550 NEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 550 ~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
+|...+. .+.+.+.++.. ..+.+.|++|+
T Consensus 184 LD~~~~~-~l~~~l~~~~~---~~~~tiiivsH 212 (236)
T cd03267 184 LDVVAQE-NIRNFLKEYNR---ERGTTVLLTSH 212 (236)
T ss_pred CCHHHHH-HHHHHHHHHHh---cCCCEEEEEec
Confidence 9987754 45556665532 12456777776
No 124
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.63 E-value=7.8e-16 Score=156.53 Aligned_cols=171 Identities=17% Similarity=0.097 Sum_probs=118.8
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccCC-CcCCc
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHP-AAKHG 475 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~-~~~~t 475 (630)
.+|++++|.+.+| ++++|+||||+||||+++.|++.+.+..|+|.+.+.++.+.... +....++.+... ++.+|
T Consensus 16 ~il~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~---~~~i~~v~q~~~~~~~~t 90 (239)
T cd03296 16 VALDDVSLDIPSG--ELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQ---ERNVGFVFQHYALFRHMT 90 (239)
T ss_pred EeeeeeeEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcc---ccceEEEecCCcccCCCC
Confidence 4789999999999 99999999999999999999999999999999988776433211 223344444333 44689
Q ss_pred chhhhHhhhccCCC----CHHH---HHHHHHHHhhhcC-CCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccc
Q psy11993 476 GREMVQLFEKGYGK----DPAE---IAFRAISHARDMH-IDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEAL 547 (630)
Q Consensus 476 v~env~l~~~~~~~----d~~~---ia~~ai~~a~~~~-~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~ 547 (630)
+.+|+.+....++. +... .+.++++.+.... .+..+...||+++++..++++|. .+| .+|++|||+
T Consensus 91 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~-----~~p-~llllDEP~ 164 (239)
T cd03296 91 VFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARALA-----VEP-KVLLLDEPF 164 (239)
T ss_pred HHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHh-----cCC-CEEEEcCCc
Confidence 99999765322211 2221 2233333332221 13345678999999999999999 788 567799999
Q ss_pred cCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 548 VGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 548 ~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
.|+|.... ..+.+.+.++... .+.+.|++|+
T Consensus 165 ~~LD~~~~-~~l~~~l~~~~~~---~~~tvii~sH 195 (239)
T cd03296 165 GALDAKVR-KELRRWLRRLHDE---LHVTTVFVTH 195 (239)
T ss_pred ccCCHHHH-HHHHHHHHHHHHH---cCCEEEEEeC
Confidence 99998765 3445556555321 2467788886
No 125
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=99.63 E-value=9.3e-16 Score=151.57 Aligned_cols=171 Identities=13% Similarity=0.062 Sum_probs=120.8
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccCC-CcCCc
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHP-AAKHG 475 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~-~~~~t 475 (630)
.+|++++|.+.+| ++++|+||||+||||+++.|++.+.+..|+|.+.+.++.... ...+....++.+... ++.+|
T Consensus 14 ~~l~~vsl~i~~G--e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~--~~~~~~i~~~~q~~~~~~~~t 89 (198)
T TIGR01189 14 MLFEGLSFTLNAG--EALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQR--DEPHRNILYLGHLPGLKPELS 89 (198)
T ss_pred EEEeeeeEEEcCC--cEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccch--HHhhhheEEeccCcccccCCc
Confidence 4789999999999 999999999999999999999999999999999887764322 122333334443222 44589
Q ss_pred chhhhHhhhccCCCCHHHHHHHHHHHhhhcC-CCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCccHHH
Q psy11993 476 GREMVQLFEKGYGKDPAEIAFRAISHARDMH-IDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVD 554 (630)
Q Consensus 476 v~env~l~~~~~~~d~~~ia~~ai~~a~~~~-~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~Dav~ 554 (630)
+.+|+.++....... ...+.++++.+.... .+..+.+.||+++++..++++|. .+| .++++|||+.++|...
T Consensus 90 v~~~l~~~~~~~~~~-~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~-----~~p-~llllDEPt~~LD~~~ 162 (198)
T TIGR01189 90 ALENLHFWAAIHGGA-QRTIEDALAAVGLTGFEDLPAAQLSAGQQRRLALARLWL-----SRA-PLWILDEPTTALDKAG 162 (198)
T ss_pred HHHHHHHHHHHcCCc-HHHHHHHHHHcCCHHHhcCChhhcCHHHHHHHHHHHHHh-----cCC-CEEEEeCCCcCCCHHH
Confidence 999998764333322 222334444433222 23446678999999999999999 788 5667999999999875
Q ss_pred HHHHHHHHHhhcccCCCCCCeeEEEEccc
Q psy11993 555 QLVKFNNAMADHSLSDNPHLIDGIVLTKF 583 (630)
Q Consensus 555 ql~~f~~~l~~~~~~~~~~~i~gIIlTK~ 583 (630)
+ ..+.+.+.++.. .+.+.|++|+-
T Consensus 163 ~-~~l~~~l~~~~~----~~~tii~~sH~ 186 (198)
T TIGR01189 163 V-ALLAGLLRAHLA----RGGIVLLTTHQ 186 (198)
T ss_pred H-HHHHHHHHHHHh----CCCEEEEEEcc
Confidence 4 456666766532 14567888873
No 126
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.63 E-value=1.2e-15 Score=158.82 Aligned_cols=173 Identities=16% Similarity=0.142 Sum_probs=121.8
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCcc---HHHHHHHHHhhhcccC--CC
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAG---AVEQLRTHVRHLCSLH--PA 471 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~g---a~eQLr~~~~~l~~~~--~~ 471 (630)
.+|++++|.+.+| ++++|+||||+||||+++.|++++.+..|+|.+.+.++.... ....++....++.+.. ..
T Consensus 21 ~~l~~is~~i~~G--e~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~~~q~~~~~~ 98 (280)
T PRK13649 21 RALFDVNLTIEDG--SYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPESQL 98 (280)
T ss_pred ceeeeeEEEEcCC--cEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHHHHHhheEEEeeChhhhh
Confidence 4789999999999 999999999999999999999999999999999887764321 1233444455555543 23
Q ss_pred cCCcchhhhHhhhccCCCCHHHH---HHHHHHHhhhcC--CCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEecc
Q psy11993 472 AKHGGREMVQLFEKGYGKDPAEI---AFRAISHARDMH--IDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEA 546 (630)
Q Consensus 472 ~~~tv~env~l~~~~~~~d~~~i---a~~ai~~a~~~~--~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~ 546 (630)
...|+.+|+.+....++.+.... +.++++.+.... .+..+-..||+++++..++++|. .+| .+|++|||
T Consensus 99 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~-----~~p-~lllLDEP 172 (280)
T PRK13649 99 FEETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESLFEKNPFELSGGQMRRVAIAGILA-----MEP-KILVLDEP 172 (280)
T ss_pred ccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHH-----cCC-CEEEEeCC
Confidence 34699999976543333333222 233333333321 24446678999999999999999 788 56669999
Q ss_pred ccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 547 LVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 547 ~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
+.++|...+ ..+.+.+.++.. .+.+.|++|+
T Consensus 173 t~~LD~~~~-~~l~~~l~~~~~----~~~tiiivsH 203 (280)
T PRK13649 173 TAGLDPKGR-KELMTLFKKLHQ----SGMTIVLVTH 203 (280)
T ss_pred cccCCHHHH-HHHHHHHHHHHH----CCCEEEEEec
Confidence 999998764 445556665542 1467778776
No 127
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.62 E-value=2e-15 Score=154.50 Aligned_cols=171 Identities=21% Similarity=0.165 Sum_probs=121.1
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHh-----cCCeEEEeecccCCccHHHHHHHHHhhhcccCC-
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIE-----NNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHP- 470 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~-----~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~- 470 (630)
.+|++++|.+.+| ++++|+||||+||||+++.|++.+.+ ..|+|.+.+.+..+... ..++....++.+...
T Consensus 17 ~~l~~is~~i~~G--e~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~-~~~~~~i~~v~q~~~~ 93 (250)
T PRK14247 17 EVLDGVNLEIPDN--TITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDV-IELRRRVQMVFQIPNP 93 (250)
T ss_pred eeeecceeEEcCC--CEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCH-HHHhccEEEEeccCcc
Confidence 4789999999999 99999999999999999999999874 58999999988755433 244555555555443
Q ss_pred CcCCcchhhhHhhhccCC--CCHHH---HHHHHHHHhhhc-----CCCeeeeccccchhchHHHHHHHHhhhhhcCCCeE
Q psy11993 471 AAKHGGREMVQLFEKGYG--KDPAE---IAFRAISHARDM-----HIDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLL 540 (630)
Q Consensus 471 ~~~~tv~env~l~~~~~~--~d~~~---ia~~ai~~a~~~-----~~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~V 540 (630)
++.+|+.+|+.+...... ....+ .+.++++.+... ..+..+.+.||+++++..++++|. .+| .+
T Consensus 94 ~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~-----~~p-~l 167 (250)
T PRK14247 94 IPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQRLCIARALA-----FQP-EV 167 (250)
T ss_pred CCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccCCHHHHHHHHHHHHHh-----cCC-CE
Confidence 556899999976532211 12222 223334333321 134456788999999999999999 788 56
Q ss_pred EEEeccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 541 LFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 541 LlV~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
+++|||+.++|...+. .+.+.+.++.. +.+.|++|+
T Consensus 168 llLDEP~~~LD~~~~~-~l~~~l~~~~~-----~~tiii~sH 203 (250)
T PRK14247 168 LLADEPTANLDPENTA-KIESLFLELKK-----DMTIVLVTH 203 (250)
T ss_pred EEEcCCCccCCHHHHH-HHHHHHHHHhc-----CCEEEEEeC
Confidence 6699999999987653 44555655432 456777776
No 128
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.62 E-value=5.5e-16 Score=154.31 Aligned_cols=186 Identities=16% Similarity=0.083 Sum_probs=130.4
Q ss_pred hhhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccCC-CcCC
Q psy11993 396 VDILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHP-AAKH 474 (630)
Q Consensus 396 ~~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~-~~~~ 474 (630)
..+|++|+|.+..| ++++++|+||+|||||++.|++...+..|+|.+.+.|+-+..+.+..+.-..++++... ++.+
T Consensus 16 ~~~L~gvsl~v~~G--eiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~Gi~~VPegR~iF~~L 93 (237)
T COG0410 16 IQALRGVSLEVERG--EIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLGIAYVPEGRRIFPRL 93 (237)
T ss_pred eeEEeeeeeEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCCeEeCcccccchhhC
Confidence 67899999999999 99999999999999999999999999999999999999888887666655555555333 7889
Q ss_pred cchhhhHhhhccCCC--CHHHHHHHHHHHhh--hcCCCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCc
Q psy11993 475 GGREMVQLFEKGYGK--DPAEIAFRAISHAR--DMHIDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGN 550 (630)
Q Consensus 475 tv~env~l~~~~~~~--d~~~ia~~ai~~a~--~~~~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~ 550 (630)
|+.||+.+....... .......++.+.+- ....+..--++||++||-..++|+|. .+| .+|++|||+.|+
T Consensus 94 TVeENL~~g~~~~~~~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaRALm-----~~P-klLLLDEPs~GL 167 (237)
T COG0410 94 TVEENLLLGAYARRDKEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARALM-----SRP-KLLLLDEPSEGL 167 (237)
T ss_pred cHHHHHhhhhhcccccccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHHHHHHh-----cCC-CEEEecCCccCc
Confidence 999999875432221 00000112222111 01123345788999999999999999 899 677799999999
Q ss_pred cHHHHHHHHHHHHhhcccCCCCCCeeEEEEcccCCcCccHHHHHHHHHH
Q psy11993 551 EAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTIDDKVGAAISMTYI 599 (630)
Q Consensus 551 Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK~D~~~~~~G~~ls~~~~ 599 (630)
...-....| +.+.++... .+++.+++- .....++.++..
T Consensus 168 aP~iv~~I~-~~i~~l~~~---~g~tIlLVE------Qn~~~Al~iaDr 206 (237)
T COG0410 168 APKIVEEIF-EAIKELRKE---GGMTILLVE------QNARFALEIADR 206 (237)
T ss_pred CHHHHHHHH-HHHHHHHHc---CCcEEEEEe------ccHHHHHHhhCE
Confidence 765333333 344444321 135555543 456667766664
No 129
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=99.62 E-value=1.4e-15 Score=164.84 Aligned_cols=195 Identities=18% Similarity=0.120 Sum_probs=131.9
Q ss_pred hhhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeec----ccCCccHHHHHHH----HHhhhcc
Q psy11993 396 VDILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAAC----DTFRAGAVEQLRT----HVRHLCS 467 (630)
Q Consensus 396 ~~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~----Dt~R~ga~eQLr~----~~~~l~~ 467 (630)
..+|++++|.+.+| ++++|+||||+||||++++|++.+.+..|+|.+.+. |+..... .+++. ...++.+
T Consensus 37 ~~~l~~vsf~i~~G--ei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~-~~l~~~r~~~i~~vfQ 113 (382)
T TIGR03415 37 VVGVANASLDIEEG--EICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDA-ATLRRLRTHRVSMVFQ 113 (382)
T ss_pred EEEEEeeEEEEcCC--CEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCH-HHHHHHhcCCEEEEEC
Confidence 45789999999999 999999999999999999999999999999999874 4433322 23322 2344444
Q ss_pred cCC-CcCCcchhhhHhhhccCCCCHHHH---HHHHHHHhhhcC-CCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEE
Q psy11993 468 LHP-AAKHGGREMVQLFEKGYGKDPAEI---AFRAISHARDMH-IDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLF 542 (630)
Q Consensus 468 ~~~-~~~~tv~env~l~~~~~~~d~~~i---a~~ai~~a~~~~-~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLl 542 (630)
.+. ++.+|+.+|+.+.....+.++... +.++++.+...+ .+..+...||+++++..++++|+ .+| .+|+
T Consensus 114 ~~~l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~~~~LSgGq~QRV~LARALa-----~~P-~ILL 187 (382)
T TIGR03415 114 KFALMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKKPGELSGGMQQRVGLARAFA-----MDA-DILL 187 (382)
T ss_pred CCcCCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHh-----cCC-CEEE
Confidence 333 556899999987643333333332 334444433322 24456788999999999999999 888 5667
Q ss_pred EeccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcccCCcCccHHHHHHHHHHhCCcEEEEecCCCC
Q psy11993 543 VGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGTGQTY 613 (630)
Q Consensus 543 V~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK~D~~~~~~G~~ls~~~~~g~PI~fvg~Gq~v 613 (630)
+|||+.++|...+.. +.+.+.++.. ..+.+.|++|+- . +.+....--|.++..|+-+
T Consensus 188 lDEPts~LD~~~r~~-l~~~L~~l~~---~~~~TII~iTHd------l----~e~~~l~DrI~vl~~G~iv 244 (382)
T TIGR03415 188 MDEPFSALDPLIRTQ-LQDELLELQA---KLNKTIIFVSHD------L----DEALKIGNRIAIMEGGRII 244 (382)
T ss_pred EECCCccCCHHHHHH-HHHHHHHHHH---hcCCEEEEEeCC------H----HHHHHhCCEEEEEECCEEE
Confidence 999999999887644 3344444432 125778888871 1 1222333456666666554
No 130
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.62 E-value=1.8e-15 Score=153.91 Aligned_cols=172 Identities=15% Similarity=0.024 Sum_probs=120.1
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccCC-CcCCc
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHP-AAKHG 475 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~-~~~~t 475 (630)
.+|++++|.+.+| ++++|+||||+||||+++.|++.+.+..|+|.+.+.+..+.......+....++.+... ++.+|
T Consensus 16 ~~l~~vs~~i~~G--e~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 93 (242)
T TIGR03411 16 KALNDLSLYVDPG--ELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGIGRKFQKPTVFENLT 93 (242)
T ss_pred EEeeeeeEEEcCC--cEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCeeEeccccccCCCCC
Confidence 4789999999999 99999999999999999999999999999999998876443322222223344444333 55679
Q ss_pred chhhhHhhhccC--------CCCH---HHHHHHHHHHhhhcC-CCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEE
Q psy11993 476 GREMVQLFEKGY--------GKDP---AEIAFRAISHARDMH-IDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFV 543 (630)
Q Consensus 476 v~env~l~~~~~--------~~d~---~~ia~~ai~~a~~~~-~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV 543 (630)
+.+|+.+..... +... ...+..+++.+.... .+..+...||+++++..++++|. .+| .+|++
T Consensus 94 v~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrv~laral~-----~~p-~~lll 167 (242)
T TIGR03411 94 VFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAGLLSHGQKQWLEIGMLLM-----QDP-KLLLL 167 (242)
T ss_pred HHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHh-----cCC-CEEEe
Confidence 999997743210 1111 112233343332221 24446678999999999999999 788 57779
Q ss_pred eccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 544 GEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 544 ~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
|||+.|+|...+ ..+.+.+.++.. +.+.|++|+
T Consensus 168 DEPt~~LD~~~~-~~l~~~l~~~~~-----~~tii~~sH 200 (242)
T TIGR03411 168 DEPVAGMTDEET-EKTAELLKSLAG-----KHSVVVVEH 200 (242)
T ss_pred cCCccCCCHHHH-HHHHHHHHHHhc-----CCEEEEEEC
Confidence 999999998776 455666766643 356777776
No 131
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=99.62 E-value=2.3e-15 Score=153.83 Aligned_cols=172 Identities=20% Similarity=0.164 Sum_probs=119.9
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhc-----CCeEEEeecccCCc-cHHHHHHHHHhhhcccCC
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIEN-----NLNVLIAACDTFRA-GAVEQLRTHVRHLCSLHP 470 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~-----ggkVlI~~~Dt~R~-ga~eQLr~~~~~l~~~~~ 470 (630)
.+|++++|.+.+| ++++|+|+||+||||+++.|++.+.+. .|+|.+.+.+..+. ......+....++.+...
T Consensus 15 ~~l~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~ 92 (247)
T TIGR00972 15 EALKNINLDIPKN--QVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVELRRRVGMVFQKPN 92 (247)
T ss_pred eeecceeEEECCC--CEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHHHHhheEEEecCcc
Confidence 4789999999999 999999999999999999999999987 99999988876432 112233444555555433
Q ss_pred CcCCcchhhhHhhhccCC-CCHHH---HHHHHHHHhhhc-----CCCeeeeccccchhchHHHHHHHHhhhhhcCCCeEE
Q psy11993 471 AAKHGGREMVQLFEKGYG-KDPAE---IAFRAISHARDM-----HIDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLL 541 (630)
Q Consensus 471 ~~~~tv~env~l~~~~~~-~d~~~---ia~~ai~~a~~~-----~~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VL 541 (630)
....|+.+|+.+.....+ ..... .+..+++.+... ..+..+...||+++++..++++|. .+| .++
T Consensus 93 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~-----~~p-~ll 166 (247)
T TIGR00972 93 PFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRLHDSALGLSGGQQQRLCIARALA-----VEP-EVL 166 (247)
T ss_pred cCCCCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcccCCHHHHHHHHHHHHHh-----cCC-CEE
Confidence 223899999976433222 12222 233334333322 123345678999999999999999 788 566
Q ss_pred EEeccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 542 FVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 542 lV~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
++|||+.++|...+. .+.+.+.++.. ..+.|++|+
T Consensus 167 llDEPt~~LD~~~~~-~l~~~l~~~~~-----~~tiiivsH 201 (247)
T TIGR00972 167 LLDEPTSALDPIATG-KIEELIQELKK-----KYTIVIVTH 201 (247)
T ss_pred EEeCCcccCCHHHHH-HHHHHHHHHHh-----cCeEEEEec
Confidence 699999999987764 44556665543 246677776
No 132
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.62 E-value=1.8e-15 Score=156.86 Aligned_cols=183 Identities=20% Similarity=0.149 Sum_probs=124.0
Q ss_pred HHHHHcCCCcchhhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHH--H-HHH
Q psy11993 385 ALVQILSPKRRVDILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQ--L-RTH 461 (630)
Q Consensus 385 ~L~~il~~~~~~~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQ--L-r~~ 461 (630)
.+.+.++. ..+|++++|.+.+| ++++|+|||||||||+++.|++.+.+..|+|.+.+.+......... + +..
T Consensus 29 ~~~~~~~~---~~il~~is~~i~~G--e~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~~ 103 (269)
T cd03294 29 EILKKTGQ---TVGVNDVSLDVREG--EIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKK 103 (269)
T ss_pred hhhhhcCC---ceEeeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcCc
Confidence 44545543 35789999999999 9999999999999999999999999999999998877643322111 1 122
Q ss_pred HhhhcccCC-CcCCcchhhhHhhhccCCCCHHH---HHHHHHHHhhhcC-CCeeeeccccchhchHHHHHHHHhhhhhcC
Q psy11993 462 VRHLCSLHP-AAKHGGREMVQLFEKGYGKDPAE---IAFRAISHARDMH-IDVVLIDTAGRMQDNEPLMRALAKLVKVNQ 536 (630)
Q Consensus 462 ~~~l~~~~~-~~~~tv~env~l~~~~~~~d~~~---ia~~ai~~a~~~~-~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~ 536 (630)
..++.+... ++.+|+.+|+.+.....+..... .+.++++.+.... .+..+-..|||++++..++++|. .+
T Consensus 104 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~lAral~-----~~ 178 (269)
T cd03294 104 ISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVGLARALA-----VD 178 (269)
T ss_pred EEEEecCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCcccCCHHHHHHHHHHHHHh-----cC
Confidence 344444332 45689999997753322222222 2233343333221 23445678999999999999999 88
Q ss_pred CCeEEEEeccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 537 PDLLLFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 537 Pd~VLlV~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
| .+|++|||+.|+|...+ ..+.+.+.++... .+.+.|++|+
T Consensus 179 p-~illLDEPt~~LD~~~~-~~l~~~l~~~~~~---~g~tiii~tH 219 (269)
T cd03294 179 P-DILLMDEAFSALDPLIR-REMQDELLRLQAE---LQKTIVFITH 219 (269)
T ss_pred C-CEEEEcCCCccCCHHHH-HHHHHHHHHHHHh---cCCEEEEEeC
Confidence 8 56669999999998765 3455555555321 1467788887
No 133
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=99.62 E-value=1.6e-15 Score=158.17 Aligned_cols=174 Identities=18% Similarity=0.117 Sum_probs=123.0
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccC--CCcCC
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLH--PAAKH 474 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~--~~~~~ 474 (630)
.+|++++|.+.+| ++++|+|+||+||||++..|++.+.++.|+|.+.+.++........++....++.+.. .+...
T Consensus 24 ~vl~~vs~~i~~G--e~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~ 101 (280)
T PRK13633 24 LALDDVNLEVKKG--EFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDIRNKAGMVFQNPDNQIVAT 101 (280)
T ss_pred ceeeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHHHhhheEEEecChhhhhccc
Confidence 4899999999999 9999999999999999999999999999999999887644332233444455555433 13345
Q ss_pred cchhhhHhhhccCCCCHHH---HHHHHHHHhhhcC-CCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCc
Q psy11993 475 GGREMVQLFEKGYGKDPAE---IAFRAISHARDMH-IDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGN 550 (630)
Q Consensus 475 tv~env~l~~~~~~~d~~~---ia~~ai~~a~~~~-~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~ 550 (630)
++.+|+.+.....+..+.. .+.++++.+.... .+..+...||+++++..++++|. .+| .++++|||+.|+
T Consensus 102 ~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~-----~~p-~llllDEPt~gL 175 (280)
T PRK13633 102 IVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGILA-----MRP-ECIIFDEPTAML 175 (280)
T ss_pred cHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHH-----cCC-CEEEEeCCcccC
Confidence 7888887654333333322 2333444333222 24457788999999999999999 888 566699999999
Q ss_pred cHHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 551 EAVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 551 Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
|...+. .+.+.+.++... .+.+.+++|+
T Consensus 176 D~~~~~-~l~~~l~~l~~~---~g~tillvtH 203 (280)
T PRK13633 176 DPSGRR-EVVNTIKELNKK---YGITIILITH 203 (280)
T ss_pred CHHHHH-HHHHHHHHHHHh---cCCEEEEEec
Confidence 988764 445566555321 2567777776
No 134
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.62 E-value=1.9e-15 Score=156.83 Aligned_cols=173 Identities=16% Similarity=0.084 Sum_probs=119.0
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCcc-HHHHHHHHHhhhcccCC--CcC
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAG-AVEQLRTHVRHLCSLHP--AAK 473 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~g-a~eQLr~~~~~l~~~~~--~~~ 473 (630)
.+|++++|.+.+| ++++|+||||+||||+++.|++.+.+..|+|.+.+.+..... ....++....++.+... +..
T Consensus 15 ~il~~isl~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~~ 92 (271)
T PRK13638 15 PVLKGLNLDFSLS--PVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQVATVFQDPEQQIFY 92 (271)
T ss_pred ccccceEEEEcCC--CEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhheEEEeeChhhcccc
Confidence 4789999999999 999999999999999999999999999999999888763111 12233444455554322 234
Q ss_pred CcchhhhHhhhccCCCCHHHH---HHHHHHHhhhcC-CCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccC
Q psy11993 474 HGGREMVQLFEKGYGKDPAEI---AFRAISHARDMH-IDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVG 549 (630)
Q Consensus 474 ~tv~env~l~~~~~~~d~~~i---a~~ai~~a~~~~-~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g 549 (630)
.++.+|+.+....++.++... +..+++.+...+ .+..+...|||++++..++++|. .+| .+|++|||+.|
T Consensus 93 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~laraL~-----~~p-~lllLDEPt~~ 166 (271)
T PRK13638 93 TDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALV-----LQA-RYLLLDEPTAG 166 (271)
T ss_pred ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHhcCCchhCCHHHHHHHHHHHHHH-----cCC-CEEEEeCCccc
Confidence 567888876433333333322 223333332222 23446678999999999999999 888 56669999999
Q ss_pred ccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 550 NEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 550 ~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
+|...+. .+.+.+.++.. .+.+.|++|+
T Consensus 167 LD~~~~~-~l~~~l~~~~~----~g~tii~vtH 194 (271)
T PRK13638 167 LDPAGRT-QMIAIIRRIVA----QGNHVIISSH 194 (271)
T ss_pred CCHHHHH-HHHHHHHHHHH----CCCEEEEEeC
Confidence 9987653 44556665542 1456677776
No 135
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.62 E-value=2.3e-15 Score=143.25 Aligned_cols=186 Identities=19% Similarity=0.133 Sum_probs=132.4
Q ss_pred HHHHHcCC-CcchhhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHh
Q psy11993 385 ALVQILSP-KRRVDILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVR 463 (630)
Q Consensus 385 ~L~~il~~-~~~~~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~ 463 (630)
.+.+.++. .....+|++|++.+..| +.++||||+|+||||++..||++-.+.+|.|.+.+.+..+...-...+..++
T Consensus 11 ~l~ktvg~~~~~l~IL~~V~L~v~~G--e~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~R~~ 88 (228)
T COG4181 11 HLSKTVGQGEGELSILKGVELVVKRG--ETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAALRAR 88 (228)
T ss_pred hhhhhhcCCCcceeEeecceEEecCC--ceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHhhcc
Confidence 34444442 33678999999999999 9999999999999999999999999999999999999987764322222334
Q ss_pred hhcccCC----CcCCcchhhhHhhhccCC---CCHHHHHHHHHHHhhhc-CCCeeeeccccchhchHHHHHHHHhhhhhc
Q psy11993 464 HLCSLHP----AAKHGGREMVQLFEKGYG---KDPAEIAFRAISHARDM-HIDVVLIDTAGRMQDNEPLMRALAKLVKVN 535 (630)
Q Consensus 464 ~l~~~~~----~~~~tv~env~l~~~~~~---~d~~~ia~~ai~~a~~~-~~D~vlIDTaGr~~~~~~L~~aL~kl~~~~ 535 (630)
.+++.++ .+.+|..+||.+.....+ .++...+.+.+...... .+....-..||+.||+..|+|+++ .
T Consensus 89 ~vGfVFQSF~Lip~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiARAfa-----~ 163 (228)
T COG4181 89 HVGFVFQSFHLIPNLTALENVALPLELRGESSADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALARAFA-----G 163 (228)
T ss_pred ceeEEEEeeeccccchhhhhccchhhhcCCccccHHHHHHHHHHHhCcccccccCccccCchHHHHHHHHHHhc-----C
Confidence 4444333 788999999987644333 34555555555544332 234557788999999999999999 8
Q ss_pred CCCeEEEEeccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 536 QPDLLLFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 536 ~Pd~VLlV~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
.| .|||.|||+-.+|...- .+....+-.. .+.++.+-|++|+
T Consensus 164 ~P-~vLfADEPTGNLD~~Tg-~~iaDLlF~l---nre~G~TlVlVTH 205 (228)
T COG4181 164 RP-DVLFADEPTGNLDRATG-DKIADLLFAL---NRERGTTLVLVTH 205 (228)
T ss_pred CC-CEEeccCCCCCcchhHH-HHHHHHHHHH---hhhcCceEEEEeC
Confidence 88 67889999988775432 2222222111 1346788999998
No 136
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=99.62 E-value=1.6e-15 Score=150.48 Aligned_cols=169 Identities=16% Similarity=0.067 Sum_probs=120.0
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccCC-CcCCc
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHP-AAKHG 475 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~-~~~~t 475 (630)
.+|++++|.+.+| ++++|+|+||+||||+++.|++.+.+..|+|.+.+.+..... ..++....++.+... ++.+|
T Consensus 14 ~~l~~isl~i~~G--e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~--~~~~~~i~~~~q~~~~~~~~t 89 (201)
T cd03231 14 ALFSGLSFTLAAG--EALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQR--DSIARGLLYLGHAPGIKTTLS 89 (201)
T ss_pred eeeccceEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccc--HHhhhheEEeccccccCCCcC
Confidence 4788999999999 999999999999999999999999999999999887764321 123333344443322 45689
Q ss_pred chhhhHhhhccCCCCHHHHHHHHHHHhhhcC-CCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCccHHH
Q psy11993 476 GREMVQLFEKGYGKDPAEIAFRAISHARDMH-IDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVD 554 (630)
Q Consensus 476 v~env~l~~~~~~~d~~~ia~~ai~~a~~~~-~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~Dav~ 554 (630)
+.+|+.++.... . ...+.++++.+...+ .+..+...||+++++..++++|. .+| .++++|||+.++|...
T Consensus 90 v~e~l~~~~~~~--~-~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~-----~~p-~llllDEPt~~LD~~~ 160 (201)
T cd03231 90 VLENLRFWHADH--S-DEQVEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLL-----SGR-PLWILDEPTTALDKAG 160 (201)
T ss_pred HHHHHHhhcccc--c-HHHHHHHHHHcCChhhhcCchhhCCHHHHHHHHHHHHHh-----cCC-CEEEEeCCCCCCCHHH
Confidence 999997753211 1 222334444443322 23446678999999999999999 788 4666999999999876
Q ss_pred HHHHHHHHHhhcccCCCCCCeeEEEEccc
Q psy11993 555 QLVKFNNAMADHSLSDNPHLIDGIVLTKF 583 (630)
Q Consensus 555 ql~~f~~~l~~~~~~~~~~~i~gIIlTK~ 583 (630)
+ ..+.+.+.++.. .+.+.|++|+-
T Consensus 161 ~-~~l~~~l~~~~~----~g~tiii~sH~ 184 (201)
T cd03231 161 V-ARFAEAMAGHCA----RGGMVVLTTHQ 184 (201)
T ss_pred H-HHHHHHHHHHHh----CCCEEEEEecC
Confidence 5 445556655542 24577888873
No 137
>KOG0058|consensus
Probab=99.61 E-value=2.3e-15 Score=169.47 Aligned_cols=176 Identities=19% Similarity=0.164 Sum_probs=132.5
Q ss_pred HcCCCc-chhhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcc
Q psy11993 389 ILSPKR-RVDILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCS 467 (630)
Q Consensus 389 il~~~~-~~~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~ 467 (630)
+-.|.+ ...+|+|++|++++| +++++|||+|+||||.++.|-.++.|++|+|++.+.|+... ....||.+...++|
T Consensus 473 FaYP~Rp~~~Vlk~lsfti~pG--e~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i~~~-~~~~lr~~Ig~V~Q 549 (716)
T KOG0058|consen 473 FAYPTRPDVPVLKNLSFTIRPG--EVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISDI-NHKYLRRKIGLVGQ 549 (716)
T ss_pred eecCCCCCchhhcCceeeeCCC--CEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCeehhhc-CHHHHHHHeeeeec
Confidence 334554 567999999999999 99999999999999999999999999999999999999444 45689999999999
Q ss_pred cCCCcCCcchhhhHhhhccCCCCHHHHHHHHHHHhh--------hcCCCeeee----ccccchhchHHHHHHHHhhhhhc
Q psy11993 468 LHPAAKHGGREMVQLFEKGYGKDPAEIAFRAISHAR--------DMHIDVVLI----DTAGRMQDNEPLMRALAKLVKVN 535 (630)
Q Consensus 468 ~~~~~~~tv~env~l~~~~~~~d~~~ia~~ai~~a~--------~~~~D~vlI----DTaGr~~~~~~L~~aL~kl~~~~ 535 (630)
++..+..|++|||.+... ..+..++ ..|.+.+. -.+||.++. ..|||++|+.+++|||. .
T Consensus 550 EPvLFs~sI~eNI~YG~~--~~t~e~i-~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIARALl-----r 621 (716)
T KOG0058|consen 550 EPVLFSGSIRENIAYGLD--NATDEEI-EAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARALL-----R 621 (716)
T ss_pred cceeecccHHHHHhcCCC--CCCHHHH-HHHHHHhChHHHHHhCccccccccCCccccccchHHHHHHHHHHHh-----c
Confidence 888889999999987543 2222222 22222221 135666654 35999999999999999 8
Q ss_pred CCCeEEEEeccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 536 QPDLLLFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 536 ~Pd~VLlV~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
+| .||++||||+++|+.... ...+++..... +-+.+++.+
T Consensus 622 ~P-~VLILDEATSALDaeSE~-lVq~aL~~~~~-----~rTVlvIAH 661 (716)
T KOG0058|consen 622 NP-RVLILDEATSALDAESEY-LVQEALDRLMQ-----GRTVLVIAH 661 (716)
T ss_pred CC-CEEEEechhhhcchhhHH-HHHHHHHHhhc-----CCeEEEEeh
Confidence 88 678899999999987653 23344433222 355566554
No 138
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.61 E-value=1.7e-15 Score=150.93 Aligned_cols=168 Identities=14% Similarity=0.052 Sum_probs=118.4
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccCC-CcCCc
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHP-AAKHG 475 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~-~~~~t 475 (630)
.+|++++|.+.+| ++++|+||||+||||+++.|++.+.+..|+|.+.+.+.. .. ..+....++.+... ++.+|
T Consensus 16 ~~l~~is~~i~~G--e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~-~~---~~~~~~~~~~~~~~~~~~~t 89 (207)
T PRK13539 16 VLFSGLSFTLAAG--EALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDID-DP---DVAEACHYLGHRNAMKPALT 89 (207)
T ss_pred EEEeceEEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCc-ch---hhHhhcEEecCCCcCCCCCc
Confidence 4789999999999 999999999999999999999999999999999887652 11 13434444443222 45689
Q ss_pred chhhhHhhhccCCCCHHHHHHHHHHHhhhcC-CCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCccHHH
Q psy11993 476 GREMVQLFEKGYGKDPAEIAFRAISHARDMH-IDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVD 554 (630)
Q Consensus 476 v~env~l~~~~~~~d~~~ia~~ai~~a~~~~-~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~Dav~ 554 (630)
+.+|+.+....++.... .+.++++.+.... .+..+-+.||+++++..++++|. .+| .++++|||+.|+|...
T Consensus 90 v~~~l~~~~~~~~~~~~-~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~-----~~p-~llllDEPt~~LD~~~ 162 (207)
T PRK13539 90 VAENLEFWAAFLGGEEL-DIAAALEAVGLAPLAHLPFGYLSAGQKRRVALARLLV-----SNR-PIWILDEPTAALDAAA 162 (207)
T ss_pred HHHHHHHHHHhcCCcHH-HHHHHHHHcCCHHHHcCChhhcCHHHHHHHHHHHHHh-----cCC-CEEEEeCCcccCCHHH
Confidence 99999775433332222 2344444433221 13445678999999999999999 788 5666999999999876
Q ss_pred HHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 555 QLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 555 ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
+. .+.+.+.++.. .+.+.+++|+
T Consensus 163 ~~-~l~~~l~~~~~----~~~tiii~sH 185 (207)
T PRK13539 163 VA-LFAELIRAHLA----QGGIVIAATH 185 (207)
T ss_pred HH-HHHHHHHHHHH----CCCEEEEEeC
Confidence 53 44455555432 1466777776
No 139
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.61 E-value=2.3e-15 Score=155.08 Aligned_cols=178 Identities=20% Similarity=0.134 Sum_probs=121.0
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccCC-CcCCc
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHP-AAKHG 475 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~-~~~~t 475 (630)
.+|++++|.+.+| ++++|+||||+||||+++.|++.+.+..|+|.+.+.++.+.... .++....++.+... ++.+|
T Consensus 16 ~il~~is~~i~~G--e~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~-~~~~~i~~~~q~~~~~~~~t 92 (258)
T PRK13548 16 TLLDDVSLTLRPG--EVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPA-ELARRRAVLPQHSSLSFPFT 92 (258)
T ss_pred eeeeeeeEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHH-HhhhheEEEccCCcCCCCCC
Confidence 4789999999999 99999999999999999999999999999999988776443322 23334455554433 35689
Q ss_pred chhhhHhhhccCCCC---HHHHHHHHHHHhhhcC-CCeeeeccccchhchHHHHHHHHhhhh-hcCCCeEEEEeccccCc
Q psy11993 476 GREMVQLFEKGYGKD---PAEIAFRAISHARDMH-IDVVLIDTAGRMQDNEPLMRALAKLVK-VNQPDLLLFVGEALVGN 550 (630)
Q Consensus 476 v~env~l~~~~~~~d---~~~ia~~ai~~a~~~~-~D~vlIDTaGr~~~~~~L~~aL~kl~~-~~~Pd~VLlV~E~~~g~ 550 (630)
+.+|+.+........ ....+..+++.+.... .+..+...|||++++..++++|....+ -.+| .+|++|||+.|+
T Consensus 93 v~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGe~qrv~la~al~~~~~~~~~p-~lllLDEPt~~L 171 (258)
T PRK13548 93 VEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLAQLWEPDGPP-RWLLLDEPTSAL 171 (258)
T ss_pred HHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCC-CEEEEeCCcccC
Confidence 999987753222211 1122334444333222 245577889999999999999981000 0156 677799999999
Q ss_pred cHHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 551 EAVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 551 Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
|...+ ..+.+.+.++.. ..+.+.|++|+
T Consensus 172 D~~~~-~~l~~~l~~~~~---~~~~tiii~sH 199 (258)
T PRK13548 172 DLAHQ-HHVLRLARQLAH---ERGLAVIVVLH 199 (258)
T ss_pred CHHHH-HHHHHHHHHHHH---hcCCEEEEEEC
Confidence 98765 345555655541 12466777776
No 140
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=99.61 E-value=9.3e-16 Score=173.25 Aligned_cols=167 Identities=19% Similarity=0.135 Sum_probs=130.2
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccCCCcCCcc
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHPAAKHGG 476 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~~~~~tv 476 (630)
.+|++++|.+++| +.++||||+||||||+++.|++++.|+.|+|.+.+.|.... .+++|....+++|.+.....|+
T Consensus 349 ~vL~~isl~i~~G--~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~--~~~lr~~i~~V~Q~~~lF~~TI 424 (529)
T TIGR02868 349 PVLDGVSLDLPPG--ERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSL--QDELRRRISVFAQDAHLFDTTV 424 (529)
T ss_pred ceeecceEEEcCC--CEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhH--HHHHHhheEEEccCcccccccH
Confidence 4899999999999 99999999999999999999999999999999999998655 5788888889998888888999
Q ss_pred hhhhHhhhccCCCCHHHHHHHHHHHhhh--------cCCCeeeec----cccchhchHHHHHHHHhhhhhcCCCeEEEEe
Q psy11993 477 REMVQLFEKGYGKDPAEIAFRAISHARD--------MHIDVVLID----TAGRMQDNEPLMRALAKLVKVNQPDLLLFVG 544 (630)
Q Consensus 477 ~env~l~~~~~~~d~~~ia~~ai~~a~~--------~~~D~vlID----TaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~ 544 (630)
++|+.+.... .+..+ ..++++.+.. .++|..+.+ .|||++|+..++|+|. .+| .++++|
T Consensus 425 ~eNI~~g~~~--~~~e~-i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARall-----~~~-~iliLD 495 (529)
T TIGR02868 425 RDNLRLGRPD--ATDEE-LWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARALL-----ADA-PILLLD 495 (529)
T ss_pred HHHHhccCCC--CCHHH-HHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHHHh-----cCC-CEEEEe
Confidence 9999885321 12222 2234433221 356766543 6999999999999999 677 577799
Q ss_pred ccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 545 EALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 545 E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
||++++|..... .+.+.+.+.. .+.+.|++|+
T Consensus 496 E~TSaLD~~te~-~I~~~l~~~~-----~~~TvIiItH 527 (529)
T TIGR02868 496 EPTEHLDAGTES-ELLEDLLAAL-----SGKTVVVITH 527 (529)
T ss_pred CCcccCCHHHHH-HHHHHHHHhc-----CCCEEEEEec
Confidence 999999987654 3444554332 2567888886
No 141
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=99.61 E-value=3.7e-15 Score=152.73 Aligned_cols=172 Identities=22% Similarity=0.185 Sum_probs=117.1
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHH-----hcCCeEEEeecccCCcc-HHHHHHHHHhhhcccCC
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLI-----ENNLNVLIAACDTFRAG-AVEQLRTHVRHLCSLHP 470 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~-----~~ggkVlI~~~Dt~R~g-a~eQLr~~~~~l~~~~~ 470 (630)
.+|++++|.+.+| ++++|+||||+||||+++.|++.+. +..|+|.+.+.+..... ....++....++.+...
T Consensus 20 ~il~~is~~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~ 97 (253)
T PRK14242 20 QALHDISLEFEQN--QVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVVELRRRVGMVFQKPN 97 (253)
T ss_pred eeecceeEEEeCC--CEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCHHHHhhcEEEEecCCC
Confidence 4789999999999 9999999999999999999999864 47899999887764311 12233444555555433
Q ss_pred CcCCcchhhhHhhhccCCC-CH---HHHHHHHHHHhhhcC-----CCeeeeccccchhchHHHHHHHHhhhhhcCCCeEE
Q psy11993 471 AAKHGGREMVQLFEKGYGK-DP---AEIAFRAISHARDMH-----IDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLL 541 (630)
Q Consensus 471 ~~~~tv~env~l~~~~~~~-d~---~~ia~~ai~~a~~~~-----~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VL 541 (630)
....|+.+|+.+.....+. .. .+.+..+++.+.... .+..+...|||++++..++++|. .+| .+|
T Consensus 98 ~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~-----~~p-~ll 171 (253)
T PRK14242 98 PFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDRLHESALGLSGGQQQRLCIARALA-----VEP-EVL 171 (253)
T ss_pred CCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHHh-----cCC-CEE
Confidence 3336999999764322221 11 112233333322211 13335678999999999999999 788 577
Q ss_pred EEeccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 542 FVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 542 lV~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
++|||+.|+|...+ ..+.+.+.++.. +.+.|++|+
T Consensus 172 llDEPt~~LD~~~~-~~l~~~l~~~~~-----~~tvii~tH 206 (253)
T PRK14242 172 LMDEPASALDPIAT-QKIEELIHELKA-----RYTIIIVTH 206 (253)
T ss_pred EEeCCcccCCHHHH-HHHHHHHHHHhc-----CCeEEEEEe
Confidence 79999999998765 345556666532 356677776
No 142
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.61 E-value=1.5e-15 Score=154.14 Aligned_cols=173 Identities=16% Similarity=0.078 Sum_probs=120.6
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccCC-CcCCc
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHP-AAKHG 475 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~-~~~~t 475 (630)
.+|++++|.+.+| ++++|+||||+||||+++.|++.+.+.+|+|.+.+.+..+......++....++.+... ++.+|
T Consensus 19 ~~l~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 96 (237)
T PRK11614 19 QALHEVSLHINQG--EIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREAVAIVPEGRRVFSRMT 96 (237)
T ss_pred eeeeeeEEEEcCC--cEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhCEEEeccCcccCCCCc
Confidence 4789999999999 99999999999999999999999999999999998876554333334444555554433 44579
Q ss_pred chhhhHhhhccCCCC-HHHHHHHHHHHhh-hc-CCCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCccH
Q psy11993 476 GREMVQLFEKGYGKD-PAEIAFRAISHAR-DM-HIDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEA 552 (630)
Q Consensus 476 v~env~l~~~~~~~d-~~~ia~~ai~~a~-~~-~~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~Da 552 (630)
+.+|+.+........ ....+.++++.+. .. ..+..+...||+++++..++++|. .+| .++++|||+.|+|.
T Consensus 97 v~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrl~la~al~-----~~p-~illlDEPt~~LD~ 170 (237)
T PRK11614 97 VEENLAMGGFFAERDQFQERIKWVYELFPRLHERRIQRAGTMSGGEQQMLAIGRALM-----SQP-RLLLLDEPSLGLAP 170 (237)
T ss_pred HHHHHHHhhhccChhHHHHHHHHHHHHHHHHHHHHhCchhhCCHHHHHHHHHHHHHH-----hCC-CEEEEcCccccCCH
Confidence 999997642211111 1122233333331 11 123345678999999999999999 788 56679999999998
Q ss_pred HHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 553 VDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 553 v~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
..+ ..+.+.+.++.. .+.+.|++|+
T Consensus 171 ~~~-~~l~~~l~~~~~----~~~tiii~sH 195 (237)
T PRK11614 171 III-QQIFDTIEQLRE----QGMTIFLVEQ 195 (237)
T ss_pred HHH-HHHHHHHHHHHH----CCCEEEEEeC
Confidence 764 455556665542 2466778776
No 143
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.61 E-value=2.5e-15 Score=156.33 Aligned_cols=173 Identities=18% Similarity=0.109 Sum_probs=122.1
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCC-ccHHHHHHHHHhhhcccC--CCcC
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFR-AGAVEQLRTHVRHLCSLH--PAAK 473 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R-~ga~eQLr~~~~~l~~~~--~~~~ 473 (630)
.+|++++|.+.+| ++++|+||||+||||+++.|++++.+..|+|.+.+.+... .....+++....++.+.. ....
T Consensus 16 ~~l~~vsl~i~~G--e~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 93 (275)
T PRK13639 16 EALKGINFKAEKG--EMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKTVGIVFQNPDDQLFA 93 (275)
T ss_pred eeeeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhheEEEeeChhhhhcc
Confidence 4789999999999 9999999999999999999999999999999999877531 111223455556666543 2345
Q ss_pred CcchhhhHhhhccCCCCHHH---HHHHHHHHhhhcC-CCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccC
Q psy11993 474 HGGREMVQLFEKGYGKDPAE---IAFRAISHARDMH-IDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVG 549 (630)
Q Consensus 474 ~tv~env~l~~~~~~~d~~~---ia~~ai~~a~~~~-~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g 549 (630)
.|+.+|+.+.....+..... .+.++++.+...+ .+..+...|||++++..++++|. .+| .++++|||+.|
T Consensus 94 ~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~Gq~qrv~laral~-----~~p-~llllDEPt~g 167 (275)
T PRK13639 94 PTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILA-----MKP-EIIVLDEPTSG 167 (275)
T ss_pred ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhhcCChhhCCHHHHHHHHHHHHHh-----cCC-CEEEEeCCCcC
Confidence 79999997543222222222 2334444433322 24556788999999999999999 788 56669999999
Q ss_pred ccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 550 NEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 550 ~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
+|...+. .+.+.+.++.. .+.+.+++|+
T Consensus 168 LD~~~~~-~l~~~l~~l~~----~~~til~vtH 195 (275)
T PRK13639 168 LDPMGAS-QIMKLLYDLNK----EGITIIISTH 195 (275)
T ss_pred CCHHHHH-HHHHHHHHHHH----CCCEEEEEec
Confidence 9987764 44455555532 2567778776
No 144
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=99.61 E-value=3.1e-15 Score=154.13 Aligned_cols=193 Identities=16% Similarity=0.139 Sum_probs=129.1
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHH-----hcCCeEEEeecccCCc-cHHHHHHHHHhhhcccCC
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLI-----ENNLNVLIAACDTFRA-GAVEQLRTHVRHLCSLHP 470 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~-----~~ggkVlI~~~Dt~R~-ga~eQLr~~~~~l~~~~~ 470 (630)
.+|++++|.+.+| ++++|+||||+||||+++.|++.+. +..|+|.+.+.++... .....++....++.+...
T Consensus 27 ~il~~isl~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~ 104 (260)
T PRK10744 27 HALKNINLDIAKN--QVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQDIALLRAKVGMVFQKPT 104 (260)
T ss_pred EEeeceeEEEcCC--CEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccchHHHhcceEEEecCCc
Confidence 4799999999999 9999999999999999999999986 4689999988776421 112244545555555433
Q ss_pred CcCCcchhhhHhhhccC-CCCHHH---HHHHHHHHhhhc-----CCCeeeeccccchhchHHHHHHHHhhhhhcCCCeEE
Q psy11993 471 AAKHGGREMVQLFEKGY-GKDPAE---IAFRAISHARDM-----HIDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLL 541 (630)
Q Consensus 471 ~~~~tv~env~l~~~~~-~~d~~~---ia~~ai~~a~~~-----~~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VL 541 (630)
....|+.+|+.+....+ +.+... .+.++++.+... ..+..+...|||++++..++++|. .+| .+|
T Consensus 105 ~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~-----~~p-~ll 178 (260)
T PRK10744 105 PFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKDKLHQSGYSLSGGQQQRLCIARGIA-----IRP-EVL 178 (260)
T ss_pred cCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCCCHHHHHHHHHHHHHH-----CCC-CEE
Confidence 33479999997643222 222222 223334333221 123446678999999999999999 788 567
Q ss_pred EEeccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcccCCcCccHHHHHHHHHHhCCcEEEEecCCCC
Q psy11993 542 FVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGTGQTY 613 (630)
Q Consensus 542 lV~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK~D~~~~~~G~~ls~~~~~g~PI~fvg~Gq~v 613 (630)
++|||+.|+|...+ ..+.+.+.++.. +.+.|++|+- ...+..+ .-.|.++..|+-+
T Consensus 179 lLDEPt~~LD~~~~-~~l~~~L~~~~~-----~~tiii~sH~------~~~~~~~----~d~i~~l~~G~i~ 234 (260)
T PRK10744 179 LLDEPCSALDPIST-GRIEELITELKQ-----DYTVVIVTHN------MQQAARC----SDYTAFMYLGELI 234 (260)
T ss_pred EEcCCCccCCHHHH-HHHHHHHHHHhc-----CCeEEEEeCC------HHHHHHh----CCEEEEEECCEEE
Confidence 79999999998765 455666766632 3567788862 1112222 2356677777643
No 145
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.61 E-value=2.3e-15 Score=156.16 Aligned_cols=173 Identities=14% Similarity=0.104 Sum_probs=121.4
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccC--CCcCC
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLH--PAAKH 474 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~--~~~~~ 474 (630)
.+|++++|.+.+| ++++|+||||+||||+++.|++++.+..|+|.+.+.+..+... ..++....++.+.. .++.+
T Consensus 23 ~il~~isl~i~~G--e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~-~~~~~~i~~v~q~~~~~~~~~ 99 (271)
T PRK13632 23 NALKNVSFEINEG--EYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENL-KEIRKKIGIIFQNPDNQFIGA 99 (271)
T ss_pred cceeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCH-HHHhcceEEEEeCHHHhcCcc
Confidence 4789999999999 9999999999999999999999999999999999887643222 23444455555543 34568
Q ss_pred cchhhhHhhhccCCCCHHHH---HHHHHHHhhhcC-CCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCc
Q psy11993 475 GGREMVQLFEKGYGKDPAEI---AFRAISHARDMH-IDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGN 550 (630)
Q Consensus 475 tv~env~l~~~~~~~d~~~i---a~~ai~~a~~~~-~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~ 550 (630)
|+.+|+.+.....+.+.... +.++++.+.... .+..+...|||++++..++++|. .+| .+|++|||+.|+
T Consensus 100 tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~-----~~p-~lllLDEP~~gL 173 (271)
T PRK13632 100 TVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLA-----LNP-EIIIFDESTSML 173 (271)
T ss_pred cHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCcccCCHHHHHHHHHHHHHH-----cCC-CEEEEeCCcccC
Confidence 99999976533222333322 233333332221 24446678999999999999999 788 566689999999
Q ss_pred cHHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 551 EAVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 551 Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
|...+ ..+.+.+.++... .+.+.|++|+
T Consensus 174 D~~~~-~~l~~~l~~~~~~---~~~tiii~sH 201 (271)
T PRK13632 174 DPKGK-REIKKIMVDLRKT---RKKTLISITH 201 (271)
T ss_pred CHHHH-HHHHHHHHHHHHh---cCcEEEEEEe
Confidence 98765 3445566555421 1356677776
No 146
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.61 E-value=3.9e-15 Score=152.76 Aligned_cols=193 Identities=16% Similarity=0.119 Sum_probs=128.8
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHh-----cCCeEEEeecccCCc-cHHHHHHHHHhhhcccCC
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIE-----NNLNVLIAACDTFRA-GAVEQLRTHVRHLCSLHP 470 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~-----~ggkVlI~~~Dt~R~-ga~eQLr~~~~~l~~~~~ 470 (630)
.+|++++|.+.+| ++++|+|+||+||||+++.|++.+.+ ..|+|.+.+.++... .....++....++.+...
T Consensus 21 ~il~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~ 98 (254)
T PRK14273 21 KALNNINIKILKN--SITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDILELRRKIGMVFQTPN 98 (254)
T ss_pred eeecceeeEEcCC--CEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccHHHHhhceEEEeeccc
Confidence 4789999999999 99999999999999999999999986 479999988776421 122334555555555433
Q ss_pred CcCCcchhhhHhhhccCCC-CHH---HHHHHHHHHhhh-----cCCCeeeeccccchhchHHHHHHHHhhhhhcCCCeEE
Q psy11993 471 AAKHGGREMVQLFEKGYGK-DPA---EIAFRAISHARD-----MHIDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLL 541 (630)
Q Consensus 471 ~~~~tv~env~l~~~~~~~-d~~---~ia~~ai~~a~~-----~~~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VL 541 (630)
...+|+.+|+.+.....+. +.. ..+..+++.+.. ...+.-.-+.||+++++..++++|. .+| .++
T Consensus 99 ~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG~~qrv~laral~-----~~p-~ll 172 (254)
T PRK14273 99 PFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQRLCIARTLA-----IEP-NVI 172 (254)
T ss_pred cccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccCCHHHHHHHHHHHHHH-----cCC-CEE
Confidence 3358999999765332221 211 222333332221 1134446778999999999999999 888 566
Q ss_pred EEeccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcccCCcCccHHHHHHHHHHhCCcEEEEecCCCC
Q psy11993 542 FVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGTGQTY 613 (630)
Q Consensus 542 lV~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK~D~~~~~~G~~ls~~~~~g~PI~fvg~Gq~v 613 (630)
++|||+.|+|..... .+.+.+.++.. +.+.|++|+- ...+..+ .-.|..+..|+-+
T Consensus 173 lLDEPt~~LD~~~~~-~l~~~l~~~~~-----~~tvii~sH~------~~~~~~~----~d~i~~l~~G~i~ 228 (254)
T PRK14273 173 LMDEPTSALDPISTG-KIEELIINLKE-----SYTIIIVTHN------MQQAGRI----SDRTAFFLNGCIE 228 (254)
T ss_pred EEeCCCcccCHHHHH-HHHHHHHHHhc-----CCEEEEEeCC------HHHHHHh----CCEEEEEECCEEE
Confidence 699999999987654 45556666532 3566777761 1112222 2346677767654
No 147
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=99.60 E-value=4e-15 Score=152.11 Aligned_cols=173 Identities=18% Similarity=0.103 Sum_probs=119.4
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCcc-------HHHHHHHHHhhhcccC
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAG-------AVEQLRTHVRHLCSLH 469 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~g-------a~eQLr~~~~~l~~~~ 469 (630)
.+|++++|.+.+| ++++|+||||+||||+++.|++.+.+..|+|.+.+.+..... ....++....++.+..
T Consensus 17 ~~l~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~ 94 (250)
T PRK11264 17 TVLHGIDLEVKPG--EVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLIRQLRQHVGFVFQNF 94 (250)
T ss_pred eeeccceEEEcCC--CEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHHHHhhhhEEEEecCc
Confidence 4789999999999 999999999999999999999999999999999887753211 1223344445555543
Q ss_pred C-CcCCcchhhhHhhhc-cCCCCHHH---HHHHHHHHhhhcC-CCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEE
Q psy11993 470 P-AAKHGGREMVQLFEK-GYGKDPAE---IAFRAISHARDMH-IDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFV 543 (630)
Q Consensus 470 ~-~~~~tv~env~l~~~-~~~~d~~~---ia~~ai~~a~~~~-~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV 543 (630)
. ++..|+.+|+.+... ..+..... .+.++++.+.... .+..+-..|||++++..++++|. .+| .+|++
T Consensus 95 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~Gq~qrv~la~al~-----~~p-~lllL 168 (250)
T PRK11264 95 NLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKETSYPRRLSGGQQQRVAIARALA-----MRP-EVILF 168 (250)
T ss_pred ccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhCChhhCChHHHHHHHHHHHHh-----cCC-CEEEE
Confidence 3 456899999976422 11222221 2233333333221 13345678999999999999999 888 56669
Q ss_pred eccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 544 GEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 544 ~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
|||+.|+|.... ..+.+.+.++.. .+.+.|++|+
T Consensus 169 DEPt~~LD~~~~-~~l~~~l~~~~~----~~~tvi~~tH 202 (250)
T PRK11264 169 DEPTSALDPELV-GEVLNTIRQLAQ----EKRTMVIVTH 202 (250)
T ss_pred eCCCccCCHHHH-HHHHHHHHHHHh----cCCEEEEEeC
Confidence 999999998764 344555655542 2466777776
No 148
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.60 E-value=1.5e-15 Score=148.23 Aligned_cols=144 Identities=14% Similarity=0.127 Sum_probs=107.6
Q ss_pred hhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccC----CCcC
Q psy11993 398 ILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLH----PAAK 473 (630)
Q Consensus 398 iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~----~~~~ 473 (630)
+|++++|.+.+| ++++|+||||+||||+++.|++.+.+..|+|.+.+.++.+.......+....++.+.. .++.
T Consensus 15 ~l~~vs~~i~~G--~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~ 92 (182)
T cd03215 15 AVRDVSFEVRAG--EIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAGIAYVPEDRKREGLVLD 92 (182)
T ss_pred eecceEEEEcCC--cEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHHhCCeEEecCCcccCcccCC
Confidence 688999999999 9999999999999999999999999999999999888755432323333344444431 2334
Q ss_pred CcchhhhHhhhccCCCCHHHHHHHHHHHhhhcCCCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCccHH
Q psy11993 474 HGGREMVQLFEKGYGKDPAEIAFRAISHARDMHIDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAV 553 (630)
Q Consensus 474 ~tv~env~l~~~~~~~d~~~ia~~ai~~a~~~~~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~Dav 553 (630)
+|+.+|+.+... .||+++++..++++|. .+| .++++|||+.++|..
T Consensus 93 ~t~~e~l~~~~~----------------------------LS~G~~qrl~la~al~-----~~p-~llllDEP~~~LD~~ 138 (182)
T cd03215 93 LSVAENIALSSL----------------------------LSGGNQQKVVLARWLA-----RDP-RVLILDEPTRGVDVG 138 (182)
T ss_pred CcHHHHHHHHhh----------------------------cCHHHHHHHHHHHHHc-----cCC-CEEEECCCCcCCCHH
Confidence 566666644210 8999999999999999 788 566699999999987
Q ss_pred HHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 554 DQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 554 ~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
.+ ..+.+.+.++.. .+.+.|++|+
T Consensus 139 ~~-~~l~~~l~~~~~----~~~tiii~sh 162 (182)
T cd03215 139 AK-AEIYRLIRELAD----AGKAVLLISS 162 (182)
T ss_pred HH-HHHHHHHHHHHH----CCCEEEEEeC
Confidence 65 345556665542 1466777776
No 149
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=99.60 E-value=2.7e-15 Score=160.23 Aligned_cols=175 Identities=14% Similarity=0.092 Sum_probs=123.3
Q ss_pred hhhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHH--HHHHHHHhhhcccC---C
Q psy11993 396 VDILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAV--EQLRTHVRHLCSLH---P 470 (630)
Q Consensus 396 ~~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~--eQLr~~~~~l~~~~---~ 470 (630)
..+|++++|.+.+| ++++|+|+||+||||++..|++++.+..|+|.+.+.|+...... ..++....++.+.. .
T Consensus 34 ~~~l~~vsl~i~~G--e~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~r~~i~~v~Q~~~~~l 111 (331)
T PRK15079 34 LKAVDGVTLRLYEG--ETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLGMKDDEWRAVRSDIQMIFQDPLASL 111 (331)
T ss_pred eEEEeeEEEEEcCC--CEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECCcCCHHHHHHHhCceEEEecCchhhc
Confidence 46899999999999 99999999999999999999999999999999999888654432 12333445555543 2
Q ss_pred CcCCcchhhhHhhhccC--CCCHHHH---HHHHHHHhhhc--CCCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEE
Q psy11993 471 AAKHGGREMVQLFEKGY--GKDPAEI---AFRAISHARDM--HIDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFV 543 (630)
Q Consensus 471 ~~~~tv~env~l~~~~~--~~d~~~i---a~~ai~~a~~~--~~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV 543 (630)
++.+|+.+|+.+....+ +.+..+. +.++++.+... ..+......||||+++..++++|+ .+| .+|++
T Consensus 112 ~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p~~LSgG~~QRv~iArAL~-----~~P-~llil 185 (331)
T PRK15079 112 NPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYPHEFSGGQCQRIGIARALI-----LEP-KLIIC 185 (331)
T ss_pred CCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHh-----cCC-CEEEE
Confidence 45789999987543222 2233322 23334433331 124446778999999999999999 899 56669
Q ss_pred eccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 544 GEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 544 ~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
|||++++|...+...+ +.+.++.. ..+.+.+++|+
T Consensus 186 DEPts~LD~~~~~~i~-~lL~~l~~---~~~~til~iTH 220 (331)
T PRK15079 186 DEPVSALDVSIQAQVV-NLLQQLQR---EMGLSLIFIAH 220 (331)
T ss_pred eCCCccCCHHHHHHHH-HHHHHHHH---HcCCEEEEEeC
Confidence 9999999988775433 34444332 12567788886
No 150
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.60 E-value=3.1e-15 Score=148.14 Aligned_cols=169 Identities=15% Similarity=0.048 Sum_probs=119.3
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccCC-CcCCc
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHP-AAKHG 475 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~-~~~~t 475 (630)
.+|++++|.+.+| ++++|+||||+||||+++.|++.+.+..|+|.+.+.+..+. ...++....++.+... ++..|
T Consensus 15 ~il~~~s~~i~~G--e~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~--~~~~~~~i~~~~q~~~~~~~~t 90 (200)
T PRK13540 15 PLLQQISFHLPAG--GLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKD--LCTYQKQLCFVGHRSGINPYLT 90 (200)
T ss_pred eEEeeeeEEECCC--CEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCccccC--HHHHHhheEEeccccccCcCCC
Confidence 4789999999999 99999999999999999999999999999999988776432 2233333444444332 45689
Q ss_pred chhhhHhhhccCCCCHHHHHHHHHHHhhhcC-CCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCccHHH
Q psy11993 476 GREMVQLFEKGYGKDPAEIAFRAISHARDMH-IDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVD 554 (630)
Q Consensus 476 v~env~l~~~~~~~d~~~ia~~ai~~a~~~~-~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~Dav~ 554 (630)
+.+|+.+..... .+. ..+.++++.+.... .+..+...||+++++..++++|. .+| .++++|||+.++|...
T Consensus 91 v~~~~~~~~~~~-~~~-~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~-----~~p-~~lilDEP~~~LD~~~ 162 (200)
T PRK13540 91 LRENCLYDIHFS-PGA-VGITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWM-----SKA-KLWLLDEPLVALDELS 162 (200)
T ss_pred HHHHHHHHHhcC-cch-HHHHHHHHHcCCchhhhCChhhcCHHHHHHHHHHHHHh-----cCC-CEEEEeCCCcccCHHH
Confidence 999987643211 121 22334444333221 24456678999999999999999 788 5666999999999876
Q ss_pred HHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 555 QLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 555 ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
+. .+.+.+.++.. .+.+.|++|+
T Consensus 163 ~~-~l~~~l~~~~~----~~~tiii~sh 185 (200)
T PRK13540 163 LL-TIITKIQEHRA----KGGAVLLTSH 185 (200)
T ss_pred HH-HHHHHHHHHHH----cCCEEEEEeC
Confidence 53 45556665532 2456777776
No 151
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.60 E-value=4e-15 Score=153.20 Aligned_cols=172 Identities=16% Similarity=0.149 Sum_probs=119.0
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHh-----cCCeEEEeecccCCcc-HHHHHHHHHhhhcccCC
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIE-----NNLNVLIAACDTFRAG-AVEQLRTHVRHLCSLHP 470 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~-----~ggkVlI~~~Dt~R~g-a~eQLr~~~~~l~~~~~ 470 (630)
.+|++++|.+.+| ++++|+|+||+||||+++.|++.+.+ ..|+|.+.+.++.... ....++....++.+...
T Consensus 26 ~il~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~ 103 (258)
T PRK14268 26 QALKNVSMQIPKN--SVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVVELRKNVGMVFQKPN 103 (258)
T ss_pred eeeeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchHHHHhhhEEEEecCCc
Confidence 4789999999999 99999999999999999999998874 6899999887764321 11233444555555433
Q ss_pred CcCCcchhhhHhhhccCCCCHHH---HHHHHHHHhhhc-----CCCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEE
Q psy11993 471 AAKHGGREMVQLFEKGYGKDPAE---IAFRAISHARDM-----HIDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLF 542 (630)
Q Consensus 471 ~~~~tv~env~l~~~~~~~d~~~---ia~~ai~~a~~~-----~~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLl 542 (630)
...+|+.+|+.+....++..... .+.++++.+... ..+..+...||+++++..++++|. .+| .+++
T Consensus 104 ~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~-----~~p-~lll 177 (258)
T PRK14268 104 PFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGGQQQRLCIARTLA-----VKP-KIIL 177 (258)
T ss_pred cCcccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchhhhhcCChhhCCHHHHHHHHHHHHHH-----cCC-CEEE
Confidence 33389999998653322322222 223344433221 123345678999999999999999 788 5667
Q ss_pred EeccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 543 VGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 543 V~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
+|||+.|+|...+. .+.+.+.++.. +.+.|++|+
T Consensus 178 lDEPt~~LD~~~~~-~l~~~l~~l~~-----~~tiiivsH 211 (258)
T PRK14268 178 FDEPTSALDPISTA-RIEDLIMNLKK-----DYTIVIVTH 211 (258)
T ss_pred EeCCCcccCHHHHH-HHHHHHHHHhh-----CCEEEEEEC
Confidence 99999999987764 34555655532 466778876
No 152
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=99.60 E-value=2.6e-15 Score=154.56 Aligned_cols=168 Identities=15% Similarity=0.112 Sum_probs=116.8
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccCC-CcCCc
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHP-AAKHG 475 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~-~~~~t 475 (630)
.+|++++|.+.+| ++++|+||||+||||+++.|++++.+..|+|.+.+.+..... ....++.+... ++.+|
T Consensus 15 ~il~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~------~~~~~v~q~~~~~~~~t 86 (255)
T PRK11248 15 PALEDINLTLESG--ELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPG------AERGVVFQNEGLLPWRN 86 (255)
T ss_pred eeEeeeeEEECCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCC------CcEEEEeCCCccCCCCc
Confidence 4789999999999 999999999999999999999999999999999887763211 01233443322 45579
Q ss_pred chhhhHhhhccCCCCHHHH---HHHHHHHhhhcC-CCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCcc
Q psy11993 476 GREMVQLFEKGYGKDPAEI---AFRAISHARDMH-IDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNE 551 (630)
Q Consensus 476 v~env~l~~~~~~~d~~~i---a~~ai~~a~~~~-~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~D 551 (630)
+.+|+.+.....+...... +.++++.+.... .+..+-..|||++++..++++|. .+| .+|++|||+.|+|
T Consensus 87 v~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrl~laral~-----~~p-~lllLDEPt~~LD 160 (255)
T PRK11248 87 VQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALA-----ANP-QLLLLDEPFGALD 160 (255)
T ss_pred HHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHh-----cCC-CEEEEeCCCccCC
Confidence 9999976433222222222 233333332211 13345678999999999999999 788 5666999999999
Q ss_pred HHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 552 AVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 552 av~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
...+ ..+.+.+.++.. ..+.+.|++|+
T Consensus 161 ~~~~-~~l~~~L~~~~~---~~g~tviivsH 187 (255)
T PRK11248 161 AFTR-EQMQTLLLKLWQ---ETGKQVLLITH 187 (255)
T ss_pred HHHH-HHHHHHHHHHHH---hcCCEEEEEeC
Confidence 8765 445555655422 12466788887
No 153
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=99.60 E-value=3e-15 Score=155.14 Aligned_cols=174 Identities=15% Similarity=0.141 Sum_probs=119.3
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHH--HHHHHHHhhhcccCC-CcC
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAV--EQLRTHVRHLCSLHP-AAK 473 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~--eQLr~~~~~l~~~~~-~~~ 473 (630)
.+|++++|.+.+| ++++|+||||+||||+++.|++.+.+..|+|.+.+.++.+.... ..++....++.+... ++.
T Consensus 21 ~il~~vsl~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~ 98 (269)
T PRK11831 21 CIFDNISLTVPRG--KITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRKRMSMLFQSGALFTD 98 (269)
T ss_pred EEEeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHhhcEEEEecccccCCC
Confidence 4789999999999 99999999999999999999999999999999988776433221 122333444444333 455
Q ss_pred CcchhhhHhhhccC-CCCHHH---HHHHHHHHhhhcC-CCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEecccc
Q psy11993 474 HGGREMVQLFEKGY-GKDPAE---IAFRAISHARDMH-IDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALV 548 (630)
Q Consensus 474 ~tv~env~l~~~~~-~~d~~~---ia~~ai~~a~~~~-~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~ 548 (630)
+|+.+|+.+....+ ..+... .+..+++.+...+ .+..+...|||++++..++++|. .+| .+|++|||+.
T Consensus 99 ~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~-----~~p-~lllLDEPt~ 172 (269)
T PRK11831 99 MNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAALARAIA-----LEP-DLIMFDEPFV 172 (269)
T ss_pred CCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHh-----cCC-CEEEEcCCCc
Confidence 79999997643221 122221 1222333332222 23345678999999999999999 788 5667999999
Q ss_pred CccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 549 GNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 549 g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
|+|...+. .+.+.+.++.. ..+.+.|++|+
T Consensus 173 ~LD~~~~~-~l~~~l~~~~~---~~g~tiiivsH 202 (269)
T PRK11831 173 GQDPITMG-VLVKLISELNS---ALGVTCVVVSH 202 (269)
T ss_pred cCCHHHHH-HHHHHHHHHHH---hcCcEEEEEec
Confidence 99987653 44555555432 12467788887
No 154
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.60 E-value=3.1e-15 Score=149.83 Aligned_cols=169 Identities=15% Similarity=0.080 Sum_probs=120.4
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccCC-CcCCc
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHP-AAKHG 475 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~-~~~~t 475 (630)
.+|++++|.+.+| ++++|+|+||+||||+++.|++.+.+..|+|.+.+.+.... ..+.+..++.+... ++.+|
T Consensus 25 ~il~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~----~~~~~i~~~~q~~~~~~~~t 98 (214)
T PRK13543 25 PVFGPLDFHVDAG--EALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRG----DRSRFMAYLGHLPGLKADLS 98 (214)
T ss_pred eeeecceEEECCC--CEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccch----hhhhceEEeecCcccccCCc
Confidence 4789999999999 99999999999999999999999999999999988776321 11233344444322 44568
Q ss_pred chhhhHhhhccCCCCHHHHHHHHHHHhhhcC-CCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCccHHH
Q psy11993 476 GREMVQLFEKGYGKDPAEIAFRAISHARDMH-IDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVD 554 (630)
Q Consensus 476 v~env~l~~~~~~~d~~~ia~~ai~~a~~~~-~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~Dav~ 554 (630)
+.+|+.+....++......+..++..+.... .+..+...||+++++..+++++. .+| .++++|||+.++|...
T Consensus 99 ~~e~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~-----~~p-~llllDEPt~~LD~~~ 172 (214)
T PRK13543 99 TLENLHFLCGLHGRRAKQMPGSALAIVGLAGYEDTLVRQLSAGQKKRLALARLWL-----SPA-PLWLLDEPYANLDLEG 172 (214)
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHcCChhhccCChhhCCHHHHHHHHHHHHHh-----cCC-CEEEEeCCcccCCHHH
Confidence 9999877543333333333344444433221 35556788999999999999999 788 5667999999999876
Q ss_pred HHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 555 QLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 555 ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
+ ..+.+.+.++.. .+.+.|++|+
T Consensus 173 ~-~~l~~~l~~~~~----~~~tiii~sH 195 (214)
T PRK13543 173 I-TLVNRMISAHLR----GGGAALVTTH 195 (214)
T ss_pred H-HHHHHHHHHHHh----CCCEEEEEec
Confidence 5 455666665543 2456777776
No 155
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.60 E-value=5.7e-15 Score=142.71 Aligned_cols=161 Identities=17% Similarity=0.161 Sum_probs=121.2
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccCC-CcCCc
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHP-AAKHG 475 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~-~~~~t 475 (630)
.++.+++|.+.+| +.+.|.||||+||||++++||+++.|..|+|.+.++.+... .+..+.+..+++-... -..+|
T Consensus 16 ~lf~~L~f~l~~G--e~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i~~~--~~~~~~~l~yLGH~~giK~eLT 91 (209)
T COG4133 16 TLFSDLSFTLNAG--EALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNV--RESYHQALLYLGHQPGIKTELT 91 (209)
T ss_pred eeecceeEEEcCC--CEEEEECCCCCcHHHHHHHHHcccCCCCCeEEecCCCCccc--hhhHHHHHHHhhccccccchhh
Confidence 4677899999999 99999999999999999999999999999999998776432 2334455566653222 45799
Q ss_pred chhhhHhhhccCCCCHHHHHHHHHHHhhhcCC-CeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCccHHH
Q psy11993 476 GREMVQLFEKGYGKDPAEIAFRAISHARDMHI-DVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVD 554 (630)
Q Consensus 476 v~env~l~~~~~~~d~~~ia~~ai~~a~~~~~-D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~Dav~ 554 (630)
+.||+.|+...++.-......+|++.....++ |+.+-..|.++|++..+++-+. .|..++++|||+++.|.-.
T Consensus 92 a~ENL~F~~~~~~~~~~~~i~~Al~~vgL~g~~dlp~~~LSAGQqRRvAlArL~l------s~~pLWiLDEP~taLDk~g 165 (209)
T COG4133 92 ALENLHFWQRFHGSGNAATIWEALAQVGLAGLEDLPVGQLSAGQQRRVALARLWL------SPAPLWILDEPFTALDKEG 165 (209)
T ss_pred HHHHHHHHHHHhCCCchhhHHHHHHHcCcccccccchhhcchhHHHHHHHHHHHc------CCCCceeecCcccccCHHH
Confidence 99999999887765344456678887777766 4445567888988888877555 3445888999999998654
Q ss_pred HHHHHHHHHhhccc
Q psy11993 555 QLVKFNNAMADHSL 568 (630)
Q Consensus 555 ql~~f~~~l~~~~~ 568 (630)
...|+..+..+..
T Consensus 166 -~a~l~~l~~~H~~ 178 (209)
T COG4133 166 -VALLTALMAAHAA 178 (209)
T ss_pred -HHHHHHHHHHHhc
Confidence 4556666655543
No 156
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=99.60 E-value=6.5e-15 Score=148.13 Aligned_cols=173 Identities=16% Similarity=0.148 Sum_probs=117.5
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEee--c--ccCCccHHH--HH-HHHHhhhcccC
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAA--C--DTFRAGAVE--QL-RTHVRHLCSLH 469 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~--~--Dt~R~ga~e--QL-r~~~~~l~~~~ 469 (630)
.+|++++|.+.+| ++++|+||||+||||+++.|++.+.+..|+|.+.+ . +..+..... .+ +....++.+..
T Consensus 22 ~il~~vs~~i~~G--e~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~ 99 (224)
T TIGR02324 22 PVLKNVSLTVNAG--ECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASPREVLEVRRKTIGYVSQFL 99 (224)
T ss_pred EEEecceEEECCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcCHHHHHHHHhcceEEEeccc
Confidence 5899999999999 99999999999999999999999999999999863 1 442222221 11 12233444432
Q ss_pred C-CcCCcchhhhHhhhccCCCCHH---HHHHHHHHHhhhcC-C-CeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEE
Q psy11993 470 P-AAKHGGREMVQLFEKGYGKDPA---EIAFRAISHARDMH-I-DVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFV 543 (630)
Q Consensus 470 ~-~~~~tv~env~l~~~~~~~d~~---~ia~~ai~~a~~~~-~-D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV 543 (630)
. ++.+|+.+|+.+.....+.+.. ..+.++++.+.... + +..+...||+++++..++++|. .+| .++++
T Consensus 100 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~laral~-----~~p-~llll 173 (224)
T TIGR02324 100 RVIPRVSALEVVAEPLLERGVPREAARARARELLARLNIPERLWHLPPATFSGGEQQRVNIARGFI-----ADY-PILLL 173 (224)
T ss_pred ccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhhCCcccCCHHHHHHHHHHHHHh-----cCC-CEEEE
Confidence 2 5567899998753322232222 22333444433322 1 3446778999999999999999 788 56669
Q ss_pred eccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 544 GEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 544 ~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
|||+.++|...+ ..+.+.+..+.. .+.+.+++|+
T Consensus 174 DEPt~~LD~~~~-~~l~~~l~~~~~----~g~tii~vsH 207 (224)
T TIGR02324 174 DEPTASLDAANR-QVVVELIAEAKA----RGAALIGIFH 207 (224)
T ss_pred cCCcccCCHHHH-HHHHHHHHHHHh----cCCEEEEEeC
Confidence 999999997765 345556665542 2567788886
No 157
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=99.60 E-value=3.9e-15 Score=153.95 Aligned_cols=174 Identities=16% Similarity=0.108 Sum_probs=120.6
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHH--HHHHHHhhhcccC---CC
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVE--QLRTHVRHLCSLH---PA 471 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~e--QLr~~~~~l~~~~---~~ 471 (630)
.+|++++|.+.+| ++++|+||||+||||+++.|++.+.+..|+|.+.+.++.+....+ .++....++.+.. .+
T Consensus 25 ~il~~isl~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~ 102 (265)
T TIGR02769 25 PVLTNVSLSIEEG--ETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQRRAFRRDVQLVFQDSPSAVN 102 (265)
T ss_pred EEeeCceeEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHHHHHHHhhceEEEecChhhhcC
Confidence 4789999999999 999999999999999999999999999999999988775443321 2334455555542 23
Q ss_pred cCCcchhhhHhhhcc-CCCCHH---HHHHHHHHHhhhc-C-CCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEec
Q psy11993 472 AKHGGREMVQLFEKG-YGKDPA---EIAFRAISHARDM-H-IDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGE 545 (630)
Q Consensus 472 ~~~tv~env~l~~~~-~~~d~~---~ia~~ai~~a~~~-~-~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E 545 (630)
+.+|+.+|+.+.... ...... ..+.++++.+... . .+..+...||+++++..++++|. .+| .+|++||
T Consensus 103 ~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGe~qrv~laral~-----~~p-~illLDE 176 (265)
T TIGR02769 103 PRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQRINIARALA-----VKP-KLIVLDE 176 (265)
T ss_pred CCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHHHHHHh-----cCC-CEEEEeC
Confidence 457899988653221 122221 2233344433321 1 23345678999999999999999 788 5667999
Q ss_pred cccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 546 ALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 546 ~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
|+.++|...+ ..+.+.+.++... .+.+.|++|+
T Consensus 177 Pt~~LD~~~~-~~l~~~l~~~~~~---~g~tiiivsH 209 (265)
T TIGR02769 177 AVSNLDMVLQ-AVILELLRKLQQA---FGTAYLFITH 209 (265)
T ss_pred CcccCCHHHH-HHHHHHHHHHHHh---cCcEEEEEeC
Confidence 9999998764 3444555555321 2467788887
No 158
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=99.60 E-value=3.7e-15 Score=152.74 Aligned_cols=174 Identities=17% Similarity=0.126 Sum_probs=119.9
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCcc------------HHHHHHHHHhh
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAG------------AVEQLRTHVRH 464 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~g------------a~eQLr~~~~~ 464 (630)
.+|++++|.+.+| ++++|+||||+||||+++.|++.+.+..|+|.+.+.++.+.. ....++....+
T Consensus 14 ~~l~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~ 91 (252)
T TIGR03005 14 TVLDGLNFSVAAG--EKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPADEKHLRQMRNKIGM 91 (252)
T ss_pred eEEeeeeEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccccccchhHHHHHhhCeEE
Confidence 4789999999999 999999999999999999999999999999999888775321 11233444445
Q ss_pred hcccCC-CcCCcchhhhHhhhc-cCCCCHHH---HHHHHHHHhhhcC-CCeeeeccccchhchHHHHHHHHhhhhhcCCC
Q psy11993 465 LCSLHP-AAKHGGREMVQLFEK-GYGKDPAE---IAFRAISHARDMH-IDVVLIDTAGRMQDNEPLMRALAKLVKVNQPD 538 (630)
Q Consensus 465 l~~~~~-~~~~tv~env~l~~~-~~~~d~~~---ia~~ai~~a~~~~-~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd 538 (630)
+.+... ++..|+.+|+.+... ..+..... .+.++++.+.... .+..+...||+++++..++++|. .+|
T Consensus 92 v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~-----~~p- 165 (252)
T TIGR03005 92 VFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHMPAQLSGGQQQRVAIARALA-----MRP- 165 (252)
T ss_pred EecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhcChhhcCHHHHHHHHHHHHHH-----cCC-
Confidence 554333 456899999976321 11222222 2233333322211 13345678999999999999999 788
Q ss_pred eEEEEeccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 539 LLLFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 539 ~VLlV~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
.++++|||+.++|...+. .+.+.+.++.. ..+.+.|++|+
T Consensus 166 ~llllDEP~~~LD~~~~~-~l~~~l~~~~~---~~~~tiiivsH 205 (252)
T TIGR03005 166 KVMLFDEVTSALDPELVG-EVLNVIRRLAS---EHDLTMLLVTH 205 (252)
T ss_pred CEEEEeCCcccCCHHHHH-HHHHHHHHHHH---hcCcEEEEEeC
Confidence 566699999999987653 44455555432 12567788887
No 159
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.60 E-value=4.1e-15 Score=144.29 Aligned_cols=169 Identities=17% Similarity=0.114 Sum_probs=127.3
Q ss_pred hhhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhccc-CCCcCC
Q psy11993 396 VDILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSL-HPAAKH 474 (630)
Q Consensus 396 ~~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~-~~~~~~ 474 (630)
..+|+++++.+.+| +.++++||+||||||+++.+|++..|..|+|.+.+..+-.+++. + ..+.+. ...|.+
T Consensus 18 ~~~le~vsL~ia~g--e~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gPgae-r-----gvVFQ~~~LlPWl 89 (259)
T COG4525 18 RSALEDVSLTIASG--ELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGAE-R-----GVVFQNEALLPWL 89 (259)
T ss_pred hhhhhccceeecCC--CEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCCCcc-c-----eeEeccCccchhh
Confidence 45889999999999 99999999999999999999999999999999999877666653 1 223332 236779
Q ss_pred cchhhhHhhhccCCCCHHHHHHHHHHHh---hhcCCC-eeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCc
Q psy11993 475 GGREMVQLFEKGYGKDPAEIAFRAISHA---RDMHID-VVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGN 550 (630)
Q Consensus 475 tv~env~l~~~~~~~d~~~ia~~ai~~a---~~~~~D-~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~ 550 (630)
++.+|+.+.....+.+++.....+.+.+ ...+++ ..+...||+|+|+..++|+|+ .+|+. |++|||...+
T Consensus 90 ~~~dNvafgL~l~Gi~k~~R~~~a~q~l~~VgL~~~~~~~i~qLSGGmrQRvGiARALa-----~eP~~-LlLDEPfgAl 163 (259)
T COG4525 90 NVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLEGAEHKYIWQLSGGMRQRVGIARALA-----VEPQL-LLLDEPFGAL 163 (259)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCcccccccceEeecchHHHHHHHHHHhh-----cCcce-EeecCchhhH
Confidence 9999999998888887766555554443 444454 457799999999999999999 99964 5599999999
Q ss_pred cHHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 551 EAVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 551 Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
|+... ..+...+-+.-. ..+...+++|+
T Consensus 164 Da~tR-e~mQelLldlw~---~tgk~~lliTH 191 (259)
T COG4525 164 DALTR-EQMQELLLDLWQ---ETGKQVLLITH 191 (259)
T ss_pred HHHHH-HHHHHHHHHHHH---HhCCeEEEEec
Confidence 98753 223333333321 12445677786
No 160
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=99.59 E-value=5.8e-15 Score=152.88 Aligned_cols=172 Identities=19% Similarity=0.136 Sum_probs=118.1
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHh-----cCCeEEEeecccCCcc-HHHHHHHHHhhhcccCC
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIE-----NNLNVLIAACDTFRAG-AVEQLRTHVRHLCSLHP 470 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~-----~ggkVlI~~~Dt~R~g-a~eQLr~~~~~l~~~~~ 470 (630)
.+|++++|.+.+| ++++|+||||+||||+++.|++.+.+ ..|+|.+.+.++.+.. ...+++....++.+...
T Consensus 33 ~il~~isl~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~~ 110 (267)
T PRK14235 33 QALFDVDLDIPEK--TVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLDVVELRARVGMVFQKPN 110 (267)
T ss_pred EEEEEEEEEEcCC--CEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccchHHHhhceEEEecCCC
Confidence 4899999999999 99999999999999999999999874 7899999988774311 12234444455555433
Q ss_pred CcCCcchhhhHhhhccCCC--CHH---HHHHHHHHHhhhc-----CCCeeeeccccchhchHHHHHHHHhhhhhcCCCeE
Q psy11993 471 AAKHGGREMVQLFEKGYGK--DPA---EIAFRAISHARDM-----HIDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLL 540 (630)
Q Consensus 471 ~~~~tv~env~l~~~~~~~--d~~---~ia~~ai~~a~~~-----~~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~V 540 (630)
....|+.+|+.+....++. ... ..+..+++.+... ..+..+...||+++++..++++|. .+| .+
T Consensus 111 ~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~-----~~p-~l 184 (267)
T PRK14235 111 PFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGLSGGQQQRLCIARAIA-----VSP-EV 184 (267)
T ss_pred CCCCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHHH-----cCC-CE
Confidence 3335999999764322221 111 2223333333221 123345678999999999999999 788 56
Q ss_pred EEEeccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 541 LFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 541 LlV~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
|++|||+.|+|...+ ..+.+.+.++.. +.+.|++|+
T Consensus 185 llLDEPt~~LD~~~~-~~l~~~L~~l~~-----~~tiiivtH 220 (267)
T PRK14235 185 ILMDEPCSALDPIAT-AKVEELIDELRQ-----NYTIVIVTH 220 (267)
T ss_pred EEEeCCCcCCCHHHH-HHHHHHHHHHhc-----CCeEEEEEc
Confidence 669999999998765 345556665532 356677776
No 161
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=99.59 E-value=2.9e-15 Score=152.23 Aligned_cols=173 Identities=14% Similarity=0.076 Sum_probs=117.2
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHH--HhcCCeEEEeecccCCccHHHHHHHHHhhhcccCC-CcC
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWL--IENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHP-AAK 473 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l--~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~-~~~ 473 (630)
.+|++++|.+.+| ++++|+||||+||||+++.|++.+ .+..|+|.+.+.+..+.......+....++.+... ++.
T Consensus 14 ~~l~~isl~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 91 (243)
T TIGR01978 14 EILKGVNLTVKKG--EIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARAGLFLAFQYPEEIPG 91 (243)
T ss_pred EEEeccceEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhccceEeeeccccccCC
Confidence 4789999999999 999999999999999999999985 68899999998887543332222222233333322 556
Q ss_pred CcchhhhHhhhccCC-------CCHH---HHHHHHHHHhhhc-C-CCeeee-ccccchhchHHHHHHHHhhhhhcCCCeE
Q psy11993 474 HGGREMVQLFEKGYG-------KDPA---EIAFRAISHARDM-H-IDVVLI-DTAGRMQDNEPLMRALAKLVKVNQPDLL 540 (630)
Q Consensus 474 ~tv~env~l~~~~~~-------~d~~---~ia~~ai~~a~~~-~-~D~vlI-DTaGr~~~~~~L~~aL~kl~~~~~Pd~V 540 (630)
+|+.+++.+....+. .+.. ..+..+++.+... . .+..+. ..||+++++..++++|. .+| .+
T Consensus 92 ~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrl~la~al~-----~~p-~l 165 (243)
T TIGR01978 92 VSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKKRNEILQMAL-----LEP-KL 165 (243)
T ss_pred cCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccccCcCHHHHHHHHHHHHHh-----cCC-CE
Confidence 788988865422111 1111 1223334333332 1 133344 48999999999999999 788 56
Q ss_pred EEEeccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 541 LFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 541 LlV~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
+++|||+.++|...+ ..+.+.+.++.. .+.+.|++|+
T Consensus 166 lllDEPt~~LD~~~~-~~l~~~l~~~~~----~~~tvi~vsH 202 (243)
T TIGR01978 166 AILDEIDSGLDIDAL-KIVAEGINRLRE----PDRSFLIITH 202 (243)
T ss_pred EEecCCcccCCHHHH-HHHHHHHHHHHH----CCcEEEEEEe
Confidence 679999999998765 455566666542 2466778776
No 162
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.59 E-value=4.2e-15 Score=154.11 Aligned_cols=172 Identities=16% Similarity=0.180 Sum_probs=118.4
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHH-----hcCCeEEEeecccCCc-cHHHHHHHHHhhhcccCC
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLI-----ENNLNVLIAACDTFRA-GAVEQLRTHVRHLCSLHP 470 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~-----~~ggkVlI~~~Dt~R~-ga~eQLr~~~~~l~~~~~ 470 (630)
.+|++++|.+.+| ++++|+|||||||||+++.|++.+. +..|+|.+.+.++... .....++....++.+...
T Consensus 27 ~il~~is~~i~~G--e~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~~~~~~~~i~~v~q~~~ 104 (269)
T PRK14259 27 EAVKNVFCDIPRG--KVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDPVEVRRRIGMVFQQPN 104 (269)
T ss_pred EEEcceEEEEcCC--CEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCCHHHHhhceEEEccCCc
Confidence 4799999999999 9999999999999999999999876 4789999988876421 111233444455555433
Q ss_pred CcCCcchhhhHhhhccCCCCH--HHHHHHHHHHhhhc-----CCCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEE
Q psy11993 471 AAKHGGREMVQLFEKGYGKDP--AEIAFRAISHARDM-----HIDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFV 543 (630)
Q Consensus 471 ~~~~tv~env~l~~~~~~~d~--~~ia~~ai~~a~~~-----~~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV 543 (630)
....|+.+|+.+.....+... .+.+.++++.+... ..+..+-..||+++++..++++|. .+| .+|++
T Consensus 105 l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrl~laral~-----~~p-~lllL 178 (269)
T PRK14259 105 PFPKSIYENIAFGARINGYTGDMDELVERSLRKAAVWDECKDKLNESGYSLSGGQQQRLCIARTIA-----IEP-EVILM 178 (269)
T ss_pred cchhhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcchhhhhhCCCcccCCHHHHHHHHHHHHHh-----cCC-CEEEE
Confidence 333599999976543222211 22233344433221 124445678999999999999999 788 56679
Q ss_pred eccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 544 GEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 544 ~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
|||+.|+|...+ ..+.+.+.++.. +.+.|++|+
T Consensus 179 DEPt~gLD~~~~-~~l~~~l~~~~~-----~~tiiivtH 211 (269)
T PRK14259 179 DEPCSALDPIST-LKIEETMHELKK-----NFTIVIVTH 211 (269)
T ss_pred cCCCccCCHHHH-HHHHHHHHHHhc-----CCEEEEEeC
Confidence 999999998765 345556666532 356677776
No 163
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=99.59 E-value=5.5e-15 Score=150.48 Aligned_cols=173 Identities=17% Similarity=0.153 Sum_probs=118.4
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCc-----cHHHHHHHHHhhhcccCC-
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRA-----GAVEQLRTHVRHLCSLHP- 470 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~-----ga~eQLr~~~~~l~~~~~- 470 (630)
.+|++++|.+.+| ++++|+||||+||||+++.|++.+.+..|+|.+.+.+.... .....++....++.+...
T Consensus 16 ~il~~vsl~i~~G--e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~ 93 (242)
T PRK11124 16 QALFDITLDCPQG--ETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRELRRNVGMVFQQYNL 93 (242)
T ss_pred eeEeeeeeEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHHHHhheEEEecCccc
Confidence 4789999999999 99999999999999999999999999999999998876311 112223334445554333
Q ss_pred CcCCcchhhhHhhh-ccCCCCHHHHHHHHHHHhhhcCC----CeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEec
Q psy11993 471 AAKHGGREMVQLFE-KGYGKDPAEIAFRAISHARDMHI----DVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGE 545 (630)
Q Consensus 471 ~~~~tv~env~l~~-~~~~~d~~~ia~~ai~~a~~~~~----D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E 545 (630)
++.+|+.+|+.+.. ...+.........+.+.+...++ +..+-..||+++++..++++|. .+| .++++||
T Consensus 94 ~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~-----~~p-~llilDE 167 (242)
T PRK11124 94 WPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVAIARALM-----MEP-QVLLFDE 167 (242)
T ss_pred cCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHh-----cCC-CEEEEcC
Confidence 45679999986422 12222222222223333333233 3345677999999999999999 788 5667999
Q ss_pred cccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 546 ALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 546 ~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
|+.|+|...+ ..+.+.+.++.. .+.+.+++|+
T Consensus 168 Pt~~LD~~~~-~~l~~~l~~~~~----~~~tii~~sh 199 (242)
T PRK11124 168 PTAALDPEIT-AQIVSIIRELAE----TGITQVIVTH 199 (242)
T ss_pred CCCcCCHHHH-HHHHHHHHHHHH----cCCEEEEEeC
Confidence 9999998764 344555655532 2466777776
No 164
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.59 E-value=6.1e-15 Score=150.68 Aligned_cols=171 Identities=20% Similarity=0.147 Sum_probs=120.0
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHH---hcCCeEEEeecccCCccHHHHHHHHHhhhcccCCCcC
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLI---ENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHPAAK 473 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~---~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~~~~ 473 (630)
.+|++++|.+.+| ++++|+||||+||||+++.|++.+. +..|+|.+.+.+..+... ..++....++.+.+....
T Consensus 16 ~~l~~isl~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~-~~~~~~i~~~~q~~~l~~ 92 (246)
T PRK14269 16 QALFDINMQIEQN--KITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDV-VALRKNVGMVFQQPNVFV 92 (246)
T ss_pred eeeeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCH-HHHhhhEEEEecCCcccc
Confidence 4789999999999 9999999999999999999999874 578999999988754432 244545555655444334
Q ss_pred CcchhhhHhhhccCCC--CHHH---HHHHHHHHhhhc-----CCCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEE
Q psy11993 474 HGGREMVQLFEKGYGK--DPAE---IAFRAISHARDM-----HIDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFV 543 (630)
Q Consensus 474 ~tv~env~l~~~~~~~--d~~~---ia~~ai~~a~~~-----~~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV 543 (630)
.|+.+|+.+....++. .... .+..+++.+... ..+......||+++++..++++|. .+| .++++
T Consensus 93 ~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~-----~~p-~lllL 166 (246)
T PRK14269 93 KSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIARALA-----IKP-KLLLL 166 (246)
T ss_pred ccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHHHHHHHHHHHHh-----cCC-CEEEE
Confidence 7999999765332221 1111 122333333221 013335678999999999999999 788 56669
Q ss_pred eccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 544 GEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 544 ~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
|||+.|+|...+ ..+.+.+.++.. +.+.+++|+
T Consensus 167 DEP~~~LD~~~~-~~l~~~l~~~~~-----~~tiii~tH 199 (246)
T PRK14269 167 DEPTSALDPISS-GVIEELLKELSH-----NLSMIMVTH 199 (246)
T ss_pred cCCcccCCHHHH-HHHHHHHHHHhC-----CCEEEEEec
Confidence 999999998764 455566665532 456778776
No 165
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=99.59 E-value=5.4e-15 Score=152.03 Aligned_cols=173 Identities=18% Similarity=0.136 Sum_probs=118.4
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCc------------cHHHHHHHHHhh
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRA------------GAVEQLRTHVRH 464 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~------------ga~eQLr~~~~~ 464 (630)
.+|++++|.+.+| ++++|+|+||+||||+++.|++.+.+..|+|.+.+.+..+. .....++....+
T Consensus 19 ~~l~~is~~i~~G--e~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 96 (257)
T PRK10619 19 EVLKGVSLQANAG--DVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLKVADKNQLRLLRTRLTM 96 (257)
T ss_pred EEEeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccccccccccccccchHHHHHhhceEE
Confidence 4789999999999 99999999999999999999999999999999998775321 011122333444
Q ss_pred hcccCC-CcCCcchhhhHhhh-ccCCCCHHHH---HHHHHHHhhhcCC--CeeeeccccchhchHHHHHHHHhhhhhcCC
Q psy11993 465 LCSLHP-AAKHGGREMVQLFE-KGYGKDPAEI---AFRAISHARDMHI--DVVLIDTAGRMQDNEPLMRALAKLVKVNQP 537 (630)
Q Consensus 465 l~~~~~-~~~~tv~env~l~~-~~~~~d~~~i---a~~ai~~a~~~~~--D~vlIDTaGr~~~~~~L~~aL~kl~~~~~P 537 (630)
+.+... ++.+|+.+|+.+.. ..+....... +.++++.+..... +..+-..|||++++..++++|. .+|
T Consensus 97 v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~G~~qrv~laral~-----~~p 171 (257)
T PRK10619 97 VFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALA-----MEP 171 (257)
T ss_pred EecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHh-----cCC
Confidence 444333 44579999986532 1122222222 2333333332221 3335668999999999999999 888
Q ss_pred CeEEEEeccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 538 DLLLFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 538 d~VLlV~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
.++++|||+.|+|...+. .+.+.+..+.. .+.+.|++|+
T Consensus 172 -~llllDEPt~~LD~~~~~-~l~~~l~~l~~----~g~tiiivsH 210 (257)
T PRK10619 172 -EVLLFDEPTSALDPELVG-EVLRIMQQLAE----EGKTMVVVTH 210 (257)
T ss_pred -CEEEEeCCcccCCHHHHH-HHHHHHHHHHh----cCCEEEEEeC
Confidence 466699999999987654 44455555432 2577788887
No 166
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.59 E-value=5.4e-15 Score=153.19 Aligned_cols=173 Identities=16% Similarity=0.069 Sum_probs=120.3
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccC--CCcCC
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLH--PAAKH 474 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~--~~~~~ 474 (630)
.+|++++|.+.+| ++++|+||||+||||+++.|++.+.+..|+|.+.+.+..+... ..++....++.+.. .++..
T Consensus 23 ~~l~~isl~i~~G--e~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~-~~~~~~i~~v~q~~~~~~~~~ 99 (269)
T PRK13648 23 FTLKDVSFNIPKG--QWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNF-EKLRKHIGIVFQNPDNQFVGS 99 (269)
T ss_pred cceeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCH-HHHHhheeEEEeChHHhcccc
Confidence 3789999999999 9999999999999999999999999999999999887644332 23455555555543 24456
Q ss_pred cchhhhHhhhccCCCCHHHH---HHHHHHHhhhcC-CCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCc
Q psy11993 475 GGREMVQLFEKGYGKDPAEI---AFRAISHARDMH-IDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGN 550 (630)
Q Consensus 475 tv~env~l~~~~~~~d~~~i---a~~ai~~a~~~~-~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~ 550 (630)
++.+|+.+.....+...... +..+++.+.... .+..+...||+++++..++++|. .+| .++++|||+.|+
T Consensus 100 ~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~-----~~p-~lllLDEPt~~L 173 (269)
T PRK13648 100 IVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVLA-----LNP-SVIILDEATSML 173 (269)
T ss_pred cHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHH-----cCC-CEEEEeCCcccC
Confidence 77888766433222222222 223333333221 24456678999999999999999 888 466699999999
Q ss_pred cHHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 551 EAVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 551 Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
|...+. .+.+.+.++.. ..+.+.|++|+
T Consensus 174 D~~~~~-~l~~~L~~~~~---~~~~tiiivtH 201 (269)
T PRK13648 174 DPDARQ-NLLDLVRKVKS---EHNITIISITH 201 (269)
T ss_pred CHHHHH-HHHHHHHHHHH---hcCCEEEEEec
Confidence 987654 44455555432 12466777776
No 167
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=99.59 E-value=2.5e-15 Score=155.37 Aligned_cols=173 Identities=19% Similarity=0.094 Sum_probs=120.7
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccCC-CcCCc
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHP-AAKHG 475 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~-~~~~t 475 (630)
.+|++++|.+.+| ++++|+||||+||||+++.|++++.+..|+|.+.+.|..+... ..++....++.+... ++.+|
T Consensus 25 ~il~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~-~~~~~~i~~v~q~~~~~~~~t 101 (265)
T PRK10575 25 TLLHPLSLTFPAG--KVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSS-KAFARKVAYLPQQLPAAEGMT 101 (265)
T ss_pred EEEeeeeeEEcCC--CEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCH-HHHhhheEEeccCCCCCCCcc
Confidence 4899999999999 9999999999999999999999999999999999887644332 244444555554422 45679
Q ss_pred chhhhHhhhcc-CC----CCH--HHHHHHHHHHhhhcC-CCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccc
Q psy11993 476 GREMVQLFEKG-YG----KDP--AEIAFRAISHARDMH-IDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEAL 547 (630)
Q Consensus 476 v~env~l~~~~-~~----~d~--~~ia~~ai~~a~~~~-~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~ 547 (630)
+.+|+.+.... .. ... ...+..+++.+.... .+..+.+.|||++++..++++|. .+| .+|++|||+
T Consensus 102 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~-----~~p-~lllLDEPt 175 (265)
T PRK10575 102 VRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVA-----QDS-RCLLLDEPT 175 (265)
T ss_pred HHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCCHHHHHHHHHHHHHh-----cCC-CEEEEcCCc
Confidence 99998764211 10 111 122333343333221 24456788999999999999999 788 566699999
Q ss_pred cCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 548 VGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 548 ~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
.|+|.... ..+.+.+.++... .+.+.|++|+
T Consensus 176 ~~LD~~~~-~~~~~~l~~l~~~---~~~tiii~sH 206 (265)
T PRK10575 176 SALDIAHQ-VDVLALVHRLSQE---RGLTVIAVLH 206 (265)
T ss_pred ccCCHHHH-HHHHHHHHHHHHh---cCCEEEEEeC
Confidence 99998765 3445555554321 1466777776
No 168
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.59 E-value=3.3e-15 Score=156.46 Aligned_cols=174 Identities=14% Similarity=0.108 Sum_probs=119.4
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCC----ccHHHHHHHHHhhhcccC--C
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFR----AGAVEQLRTHVRHLCSLH--P 470 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R----~ga~eQLr~~~~~l~~~~--~ 470 (630)
.+|++++|.+.+| ++++|+|||||||||+++.|++.+.+..|+|.+.+.++.. ......++....++.+.. .
T Consensus 25 ~il~~is~~i~~G--e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~~i~~v~q~~~~~ 102 (289)
T PRK13645 25 KALNNTSLTFKKN--KVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFPEYQ 102 (289)
T ss_pred ceeeeeEEEEeCC--CEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEccccccccccHHHHhccEEEEEeCcchh
Confidence 4899999999999 9999999999999999999999999999999998877531 111223444445555442 1
Q ss_pred CcCCcchhhhHhhhccCCCCHHHH---HHHHHHHhhhc-C-CCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEec
Q psy11993 471 AAKHGGREMVQLFEKGYGKDPAEI---AFRAISHARDM-H-IDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGE 545 (630)
Q Consensus 471 ~~~~tv~env~l~~~~~~~d~~~i---a~~ai~~a~~~-~-~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E 545 (630)
....|+.+|+.+.....+...... +..+++..... + .+..+...|||++++..++++|. .+| .+|++||
T Consensus 103 ~~~~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~~LS~Gq~qrv~laral~-----~~p-~lLlLDE 176 (289)
T PRK13645 103 LFQETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPEDYVKRSPFELSGGQKRRVALAGIIA-----MDG-NTLVLDE 176 (289)
T ss_pred hhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHH-----hCC-CEEEEeC
Confidence 234689999976433222222222 22333333321 1 23446678999999999999999 788 5677999
Q ss_pred cccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 546 ALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 546 ~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
|+.|+|...+ ..+.+.+.++... .+.+.|++|+
T Consensus 177 Pt~~LD~~~~-~~l~~~l~~~~~~---~~~tiiiisH 209 (289)
T PRK13645 177 PTGGLDPKGE-EDFINLFERLNKE---YKKRIIMVTH 209 (289)
T ss_pred CcccCCHHHH-HHHHHHHHHHHHh---cCCEEEEEec
Confidence 9999998765 4445555554321 2466777776
No 169
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.59 E-value=4.3e-15 Score=154.71 Aligned_cols=173 Identities=14% Similarity=0.063 Sum_probs=122.9
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccC--CCcCC
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLH--PAAKH 474 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~--~~~~~ 474 (630)
.+|++++|.+.+| ++++|+|+||+||||++..|++++.+..|+|.+.+.++...... .++....++.+.. .++..
T Consensus 21 ~~l~~v~l~i~~G--e~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~-~~~~~i~~v~q~~~~~~~~~ 97 (277)
T PRK13642 21 NQLNGVSFSITKG--EWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVW-NLRRKIGMVFQNPDNQFVGA 97 (277)
T ss_pred eeeeeeEEEEcCC--CEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHH-HHhcceEEEEECHHHhhccC
Confidence 4799999999999 99999999999999999999999999999999998876443332 3455555555543 25567
Q ss_pred cchhhhHhhhccCCCCHHHH---HHHHHHHhhhcC-CCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCc
Q psy11993 475 GGREMVQLFEKGYGKDPAEI---AFRAISHARDMH-IDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGN 550 (630)
Q Consensus 475 tv~env~l~~~~~~~d~~~i---a~~ai~~a~~~~-~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~ 550 (630)
|+.+|+.+.....+...... +..+++.+...+ .+..+...||+++++..++++|. .+| .++++|||+.|+
T Consensus 98 tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lAraL~-----~~p-~llllDEPt~~L 171 (277)
T PRK13642 98 TVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIA-----LRP-EIIILDESTSML 171 (277)
T ss_pred CHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHH-----cCC-CEEEEeCCcccC
Confidence 99999976433223233222 233333322211 23346678999999999999999 888 566699999999
Q ss_pred cHHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 551 EAVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 551 Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
|...+. .+.+.+.++... .+.+.|++|+
T Consensus 172 D~~~~~-~l~~~l~~l~~~---~g~tiil~sH 199 (277)
T PRK13642 172 DPTGRQ-EIMRVIHEIKEK---YQLTVLSITH 199 (277)
T ss_pred CHHHHH-HHHHHHHHHHHh---cCCEEEEEeC
Confidence 987653 455556555421 2467778776
No 170
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.59 E-value=5.2e-15 Score=151.68 Aligned_cols=195 Identities=12% Similarity=0.101 Sum_probs=127.4
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccCC-CcCCc
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHP-AAKHG 475 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~-~~~~t 475 (630)
.+|++++|.+.+| ++++|+||||+||||+++.|++.+.+..|+|.+.+.++.+.......+....++.+... ++.+|
T Consensus 19 ~~l~~is~~i~~G--e~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 96 (255)
T PRK11300 19 LAVNNVNLEVREQ--EIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMGVVRTFQHVRLFREMT 96 (255)
T ss_pred EEEEeeeeEEcCC--eEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcCeEEeccCcccCCCCc
Confidence 4789999999999 99999999999999999999999999999999999887554322222222222333322 55689
Q ss_pred chhhhHhhhcc----------CC-----CC---HHHHHHHHHHHhhhcC-CCeeeeccccchhchHHHHHHHHhhhhhcC
Q psy11993 476 GREMVQLFEKG----------YG-----KD---PAEIAFRAISHARDMH-IDVVLIDTAGRMQDNEPLMRALAKLVKVNQ 536 (630)
Q Consensus 476 v~env~l~~~~----------~~-----~d---~~~ia~~ai~~a~~~~-~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~ 536 (630)
+.+|+.+.... +. .. ....+.++++.+.... .+.-+...||+++++..++++|. .+
T Consensus 97 v~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~-----~~ 171 (255)
T PRK11300 97 VIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQAGNLAYGQQRRLEIARCMV-----TQ 171 (255)
T ss_pred HHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCChhhCCHHHHHHHHHHHHHh-----cC
Confidence 99999864210 00 00 0112223333322211 23446678999999999999999 88
Q ss_pred CCeEEEEeccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcccCCcCccHHHHHHHHHHhCCcEEEEecCCCC
Q psy11993 537 PDLLLFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGTGQTY 613 (630)
Q Consensus 537 Pd~VLlV~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK~D~~~~~~G~~ls~~~~~g~PI~fvg~Gq~v 613 (630)
| .+|++|||+.|+|...+. .+.+.+.++.. ..+.+.|++|+-. ..+...+ --+.++..|+-+
T Consensus 172 p-~llllDEPt~~LD~~~~~-~l~~~L~~~~~---~~~~tii~~sH~~------~~~~~~~----d~i~~l~~g~i~ 233 (255)
T PRK11300 172 P-EILMLDEPAAGLNPKETK-ELDELIAELRN---EHNVTVLLIEHDM------KLVMGIS----DRIYVVNQGTPL 233 (255)
T ss_pred C-CEEEEcCCccCCCHHHHH-HHHHHHHHHHh---hcCCEEEEEeCCH------HHHHHhC----CEEEEEECCeEE
Confidence 8 566699999999987653 34445554432 1246778888722 1222222 246667777654
No 171
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.59 E-value=3.1e-15 Score=171.15 Aligned_cols=167 Identities=18% Similarity=0.149 Sum_probs=129.9
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccCCCcCCcc
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHPAAKHGG 476 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~~~~~tv 476 (630)
.+|++++|.+++| +.++||||+|+||||+++.|++++ |..|+|.+.+.|..... .+.+|.+..+++|.+.....|+
T Consensus 364 ~vL~~i~l~i~~G--~~vaIvG~SGsGKSTL~~lL~g~~-p~~G~I~i~g~~i~~~~-~~~lr~~i~~v~Q~~~LF~~TI 439 (588)
T PRK11174 364 TLAGPLNFTLPAG--QRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRELD-PESWRKHLSWVGQNPQLPHGTL 439 (588)
T ss_pred eeeeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhcCC-CCCcEEEECCEecccCC-HHHHHhheEEecCCCcCCCcCH
Confidence 5899999999999 999999999999999999999999 99999999999885444 5688888999999888888999
Q ss_pred hhhhHhhhccCCCCHHHHHHHHHHHhh--------hcCCCeeeec----cccchhchHHHHHHHHhhhhhcCCCeEEEEe
Q psy11993 477 REMVQLFEKGYGKDPAEIAFRAISHAR--------DMHIDVVLID----TAGRMQDNEPLMRALAKLVKVNQPDLLLFVG 544 (630)
Q Consensus 477 ~env~l~~~~~~~d~~~ia~~ai~~a~--------~~~~D~vlID----TaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~ 544 (630)
++|+.+... ..+..++ .++++.+. -.++|..+.+ .|||++|+..++|+|. .+| .++++|
T Consensus 440 ~eNI~~g~~--~~~~eei-~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARAll-----~~~-~IliLD 510 (588)
T PRK11174 440 RDNVLLGNP--DASDEQL-QQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALL-----QPC-QLLLLD 510 (588)
T ss_pred HHHhhcCCC--CCCHHHH-HHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHHh-----cCC-CEEEEe
Confidence 999988632 1233322 22333221 1356776544 6999999999999999 777 577799
Q ss_pred ccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 545 EALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 545 E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
||++++|....... .+.+.+.. .+.+.|++|+
T Consensus 511 E~TSaLD~~te~~i-~~~l~~~~-----~~~TvIiItH 542 (588)
T PRK11174 511 EPTASLDAHSEQLV-MQALNAAS-----RRQTTLMVTH 542 (588)
T ss_pred CCccCCCHHHHHHH-HHHHHHHh-----CCCEEEEEec
Confidence 99999998876544 44565443 2567888887
No 172
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=99.59 E-value=7.3e-15 Score=150.30 Aligned_cols=172 Identities=21% Similarity=0.194 Sum_probs=117.8
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHh-----cCCeEEEeecccCCc-cHHHHHHHHHhhhcccCC
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIE-----NNLNVLIAACDTFRA-GAVEQLRTHVRHLCSLHP 470 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~-----~ggkVlI~~~Dt~R~-ga~eQLr~~~~~l~~~~~ 470 (630)
.+|++++|.+.+| ++++|+||||+||||+++.|++.+.+ ..|+|.+.+.++.+. .....++....++.+...
T Consensus 17 ~~l~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~ 94 (250)
T PRK14240 17 QALKKINLDIEEN--QVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVNQLRKRVGMVFQQPN 94 (250)
T ss_pred eeeecceEEEcCC--CEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHHHhccEEEEecCCc
Confidence 4789999999999 99999999999999999999998753 589999998876532 112234444555555433
Q ss_pred CcCCcchhhhHhhhccCCC-CHH---HHHHHHHHHhhhc-----CCCeeeeccccchhchHHHHHHHHhhhhhcCCCeEE
Q psy11993 471 AAKHGGREMVQLFEKGYGK-DPA---EIAFRAISHARDM-----HIDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLL 541 (630)
Q Consensus 471 ~~~~tv~env~l~~~~~~~-d~~---~ia~~ai~~a~~~-----~~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VL 541 (630)
...+|+.+|+.+.....+. ... ..+.++++.+... ..+.-+.+.||+++++..++++|. .+| .++
T Consensus 95 ~~~~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~-----~~p-~ll 168 (250)
T PRK14240 95 PFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGLSGGQQQRLCIARALA-----VEP-EVL 168 (250)
T ss_pred cCcccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCCCHHHHHHHHHHHHHh-----cCC-CEE
Confidence 3348999999765432221 111 1222333322210 113345678999999999999999 788 567
Q ss_pred EEeccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 542 FVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 542 lV~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
++|||+.|+|...+. .+.+.+.++.. +.+.|++|+
T Consensus 169 llDEP~~~LD~~~~~-~l~~~l~~~~~-----~~tiii~sH 203 (250)
T PRK14240 169 LMDEPTSALDPISTL-KIEELIQELKK-----DYTIVIVTH 203 (250)
T ss_pred EEeCCCccCCHHHHH-HHHHHHHHHhc-----CCeEEEEEe
Confidence 799999999988764 44556665532 356777776
No 173
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.59 E-value=6.5e-15 Score=150.93 Aligned_cols=171 Identities=19% Similarity=0.171 Sum_probs=118.0
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhc-----CCeEEEeecccC--CccHHHHHHHHHhhhcccC
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIEN-----NLNVLIAACDTF--RAGAVEQLRTHVRHLCSLH 469 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~-----ggkVlI~~~Dt~--R~ga~eQLr~~~~~l~~~~ 469 (630)
.+|++++|.+.+| ++++|+||||+||||+++.|++++.+. .|+|.+.+.++. +.... .++....++.+..
T Consensus 18 ~~l~~is~~i~~G--e~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~-~~~~~i~~~~q~~ 94 (253)
T PRK14267 18 HVIKGVDLKIPQN--GVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPI-EVRREVGMVFQYP 94 (253)
T ss_pred eeeecceEEEcCC--CEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChH-HHhhceeEEecCC
Confidence 4789999999999 999999999999999999999998863 899999988764 22222 3344445555433
Q ss_pred C-CcCCcchhhhHhhhccCC--CCHHH---HHHHHHHHhhhc-----CCCeeeeccccchhchHHHHHHHHhhhhhcCCC
Q psy11993 470 P-AAKHGGREMVQLFEKGYG--KDPAE---IAFRAISHARDM-----HIDVVLIDTAGRMQDNEPLMRALAKLVKVNQPD 538 (630)
Q Consensus 470 ~-~~~~tv~env~l~~~~~~--~d~~~---ia~~ai~~a~~~-----~~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd 538 (630)
. ++.+|+.+|+.+.....+ ..... .+..+++.+... ..+..+...||+++++..++++|. .+|
T Consensus 95 ~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~-----~~p- 168 (253)
T PRK14267 95 NPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPSNLSGGQRQRLVIARALA-----MKP- 168 (253)
T ss_pred ccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhhhhccChhhCCHHHHHHHHHHHHHh-----cCC-
Confidence 3 456799999976432111 12222 223333332211 123446678999999999999999 788
Q ss_pred eEEEEeccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 539 LLLFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 539 ~VLlV~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
.++++|||+.|+|...+ ..+.+.+.++.. +.+.|++|+
T Consensus 169 ~llllDEP~~~LD~~~~-~~l~~~l~~~~~-----~~tiii~sH 206 (253)
T PRK14267 169 KILLMDEPTANIDPVGT-AKIEELLFELKK-----EYTIVLVTH 206 (253)
T ss_pred CEEEEcCCCccCCHHHH-HHHHHHHHHHhh-----CCEEEEEEC
Confidence 56669999999998765 445556665532 356777776
No 174
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.59 E-value=3e-15 Score=152.60 Aligned_cols=172 Identities=16% Similarity=0.136 Sum_probs=119.3
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccCCCcCCcc
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHPAAKHGG 476 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~~~~~tv 476 (630)
.+|++++|.+.+| ++++|+||||+||||+++.|++.+.+..|+|.+.+.|+.+.... .++....++.+.......++
T Consensus 17 ~~l~~vsl~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~-~~~~~i~~~~q~~~~~~~tv 93 (241)
T PRK14250 17 EILKDISVKFEGG--AIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVI-DLRRKIGMVFQQPHLFEGTV 93 (241)
T ss_pred eeeeeeeEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChH-HhhhcEEEEecCchhchhhH
Confidence 4789999999999 99999999999999999999999999999999999887543322 33444455555433334689
Q ss_pred hhhhHhhhccCCCCHHHHHHHHHHHhhhc-C-CCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCccHHH
Q psy11993 477 REMVQLFEKGYGKDPAEIAFRAISHARDM-H-IDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVD 554 (630)
Q Consensus 477 ~env~l~~~~~~~d~~~ia~~ai~~a~~~-~-~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~Dav~ 554 (630)
.+|+.+.....+. ....+...++.+... + .+..+-..||+++++..++++|. .+| .++++|||+.++|...
T Consensus 94 ~e~l~~~~~~~~~-~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la~al~-----~~p-~llllDEPt~~LD~~~ 166 (241)
T PRK14250 94 KDNIEYGPMLKGE-KNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLA-----NNP-EVLLLDEPTSALDPTS 166 (241)
T ss_pred HHHHhcchhhcCc-HHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHh-----cCC-CEEEEeCCcccCCHHH
Confidence 9998754322221 122233334333321 1 12335678999999999999999 788 5667999999999876
Q ss_pred HHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 555 QLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 555 ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
+ ..+.+.+..+... .+.+.|++|+
T Consensus 167 ~-~~l~~~l~~~~~~---~g~tii~~sH 190 (241)
T PRK14250 167 T-EIIEELIVKLKNK---MNLTVIWITH 190 (241)
T ss_pred H-HHHHHHHHHHHHh---CCCEEEEEec
Confidence 4 3445556554321 2467788886
No 175
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.58 E-value=4e-15 Score=167.27 Aligned_cols=173 Identities=14% Similarity=0.048 Sum_probs=121.0
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccC-CCcCCc
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLH-PAAKHG 475 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~-~~~~~t 475 (630)
.+|++++|.+.+| ++++|+|||||||||+++.|++.+.+..|+|.+.+.++.+.......+....++.+.. .++.+|
T Consensus 18 ~~l~~is~~i~~G--e~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~t 95 (501)
T PRK10762 18 KALSGAALNVYPG--RVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAGIGIIHQELNLIPQLT 95 (501)
T ss_pred EEeeeeeEEEcCC--eEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEEEEEcchhccCCCc
Confidence 4789999999999 9999999999999999999999999999999999888744333222222334444432 255689
Q ss_pred chhhhHhhhccC---C-CCHHH---HHHHHHHHhhhcC-CCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccc
Q psy11993 476 GREMVQLFEKGY---G-KDPAE---IAFRAISHARDMH-IDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEAL 547 (630)
Q Consensus 476 v~env~l~~~~~---~-~d~~~---ia~~ai~~a~~~~-~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~ 547 (630)
+.+|+.+....+ + .+... .+.++++.+.... .+..+-+.|||++++..++++|. .+| .+|++|||+
T Consensus 96 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~-----~~p-~lllLDEPt 169 (501)
T PRK10762 96 IAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVGELSIGEQQMVEIAKVLS-----FES-KVIIMDEPT 169 (501)
T ss_pred HHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHh-----cCC-CEEEEeCCc
Confidence 999997643211 1 12222 2333444433322 24456788999999999999999 888 566699999
Q ss_pred cCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 548 VGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 548 ~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
+++|...+. .+.+.+.++.. .+.+.|++|+
T Consensus 170 ~~LD~~~~~-~l~~~l~~l~~----~~~tvii~sH 199 (501)
T PRK10762 170 DALTDTETE-SLFRVIRELKS----QGRGIVYISH 199 (501)
T ss_pred CCCCHHHHH-HHHHHHHHHHH----CCCEEEEEeC
Confidence 999987654 34445555432 2466778787
No 176
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.58 E-value=8.8e-15 Score=150.64 Aligned_cols=172 Identities=15% Similarity=0.154 Sum_probs=117.8
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHH--h---cCCeEEEeecccCCc-cHHHHHHHHHhhhcccCC
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLI--E---NNLNVLIAACDTFRA-GAVEQLRTHVRHLCSLHP 470 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~--~---~ggkVlI~~~Dt~R~-ga~eQLr~~~~~l~~~~~ 470 (630)
.+|++++|.+.+| ++++|+||||+||||+++.|++.+. + ..|+|.+.+.+.... .....++....++.+...
T Consensus 26 ~~l~~vs~~i~~G--e~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~ 103 (259)
T PRK14274 26 HALKNINLSIPEN--EVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLVELRKNIGMVFQKGN 103 (259)
T ss_pred eeEEeeEEEEcCC--CEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCHHHHhhceEEEecCCc
Confidence 4899999999999 9999999999999999999999986 3 479999988876421 111233444555555433
Q ss_pred CcCCcchhhhHhhhccCCC-CHHHH---HHHHHHHhhhc-----CCCeeeeccccchhchHHHHHHHHhhhhhcCCCeEE
Q psy11993 471 AAKHGGREMVQLFEKGYGK-DPAEI---AFRAISHARDM-----HIDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLL 541 (630)
Q Consensus 471 ~~~~tv~env~l~~~~~~~-d~~~i---a~~ai~~a~~~-----~~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VL 541 (630)
....|+.+|+.+.....+. ...+. +..+++.+... ..+..+...||+++++..++++|. .+| .++
T Consensus 104 ~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LS~Gq~qrv~laral~-----~~p-~ll 177 (259)
T PRK14274 104 PFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQALSLSGGQQQRLCIARALA-----TNP-DVL 177 (259)
T ss_pred ccccCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHh-----cCC-CEE
Confidence 3335999999765432221 22221 22333332221 123446678999999999999999 788 567
Q ss_pred EEeccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 542 FVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 542 lV~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
++|||+.|+|...+ ..+.+.+.++.. +.+.|++|+
T Consensus 178 llDEPt~~LD~~~~-~~l~~~l~~~~~-----~~tiiivtH 212 (259)
T PRK14274 178 LMDEPTSALDPVST-RKIEELILKLKE-----KYTIVIVTH 212 (259)
T ss_pred EEcCCcccCCHHHH-HHHHHHHHHHhc-----CCEEEEEEc
Confidence 79999999998765 345566665542 356777776
No 177
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=99.58 E-value=5.3e-15 Score=149.63 Aligned_cols=170 Identities=16% Similarity=0.127 Sum_probs=114.6
Q ss_pred hhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHh----cCCeEEEeecccCCccHHHHHHHHHhhhcccC---C
Q psy11993 398 ILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIE----NNLNVLIAACDTFRAGAVEQLRTHVRHLCSLH---P 470 (630)
Q Consensus 398 iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~----~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~---~ 470 (630)
+|++++|.+.+| ++++|+||||+||||+++.|++.+.+ ..|+|.+.+.++.+. +..+....++.+.. .
T Consensus 1 ~l~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~---~~~~~~i~~~~q~~~~~~ 75 (230)
T TIGR02770 1 LVQDLNLSLKRG--EVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPL---SIRGRHIATIMQNPRTAF 75 (230)
T ss_pred CccceeEEEcCC--CEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhh---hhhhheeEEEecCchhhc
Confidence 467899999999 99999999999999999999999988 899999998876332 11122344444433 1
Q ss_pred CcCCcchhhhHhhhccCCCCHH---HHHHHHHHHhhhcC----CCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEE
Q psy11993 471 AAKHGGREMVQLFEKGYGKDPA---EIAFRAISHARDMH----IDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFV 543 (630)
Q Consensus 471 ~~~~tv~env~l~~~~~~~d~~---~ia~~ai~~a~~~~----~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV 543 (630)
.+.+++.+++.+.....+.... ..+.++++.+.... .+..+...||+++++..++++|. .+| .++++
T Consensus 76 ~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral~-----~~p-~vllL 149 (230)
T TIGR02770 76 NPLFTMGNHAIETLRSLGKLSKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALL-----LEP-PFLIA 149 (230)
T ss_pred CcccCHHHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHHh-----cCC-CEEEE
Confidence 2446888887543222221111 12333343333221 13346678999999999999999 788 57779
Q ss_pred eccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 544 GEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 544 ~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
|||+.|+|.... ..+.+.+.++... .+.+.|++|+
T Consensus 150 DEPt~~LD~~~~-~~l~~~l~~~~~~---~~~tiii~sH 184 (230)
T TIGR02770 150 DEPTTDLDVVNQ-ARVLKLLRELRQL---FGTGILLITH 184 (230)
T ss_pred cCCccccCHHHH-HHHHHHHHHHHHh---cCCEEEEEeC
Confidence 999999998764 3445555554321 1456777776
No 178
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=99.58 E-value=7.5e-15 Score=151.06 Aligned_cols=172 Identities=19% Similarity=0.156 Sum_probs=118.0
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHh-----cCCeEEEeecccCCcc-HHHHHHHHHhhhcccCC
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIE-----NNLNVLIAACDTFRAG-AVEQLRTHVRHLCSLHP 470 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~-----~ggkVlI~~~Dt~R~g-a~eQLr~~~~~l~~~~~ 470 (630)
.+|++++|.+.+| ++++|+||||+||||+++.|++.+.+ ..|+|.+.+.+..+.. ....++....++.+...
T Consensus 18 ~~l~~isl~i~~G--e~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~~~~~~i~~~~q~~~ 95 (258)
T PRK14241 18 HAVEDVNLNIEPR--SVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVAVRRTIGMVFQRPN 95 (258)
T ss_pred eeeeeeeEEEcCC--cEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChHHHhcceEEEccccc
Confidence 4789999999999 99999999999999999999999874 5899999887764311 11233444444444332
Q ss_pred -CcCCcchhhhHhhhccCCC-CHH---HHHHHHHHHhhh-----cCCCeeeeccccchhchHHHHHHHHhhhhhcCCCeE
Q psy11993 471 -AAKHGGREMVQLFEKGYGK-DPA---EIAFRAISHARD-----MHIDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLL 540 (630)
Q Consensus 471 -~~~~tv~env~l~~~~~~~-d~~---~ia~~ai~~a~~-----~~~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~V 540 (630)
++.+|+.+|+.+....++. ... +.+.++++.+.. ...+..+...||+++++..++++|. .+| .+
T Consensus 96 ~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~-----~~p-~l 169 (258)
T PRK14241 96 PFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQQRLCIARAIA-----VEP-DV 169 (258)
T ss_pred cCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHHh-----cCC-CE
Confidence 4568999999764322221 121 122333333321 1124446788999999999999999 788 56
Q ss_pred EEEeccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 541 LFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 541 LlV~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
+++|||+.|+|...+. .+.+.+.++.. ..+.|++|+
T Consensus 170 lllDEPt~~LD~~~~~-~l~~~l~~~~~-----~~tviivsH 205 (258)
T PRK14241 170 LLMDEPCSALDPISTL-AIEDLINELKQ-----DYTIVIVTH 205 (258)
T ss_pred EEEcCCCccCCHHHHH-HHHHHHHHHhc-----CCEEEEEec
Confidence 7799999999987653 44555655532 356777776
No 179
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.58 E-value=1.3e-14 Score=139.07 Aligned_cols=202 Identities=20% Similarity=0.185 Sum_probs=143.9
Q ss_pred HHHHHHcCCCcchhhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeeccc---------CCccH
Q psy11993 384 DALVQILSPKRRVDILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDT---------FRAGA 454 (630)
Q Consensus 384 ~~L~~il~~~~~~~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt---------~R~ga 454 (630)
+.|.+-|++ .++|++|++....| .+|.|+|.+||||||+++||..+-.|..|+|.+.+..+ ..++.
T Consensus 10 ~dlHK~~G~---~eVLKGvSL~A~~G--dVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~~ad 84 (256)
T COG4598 10 EDLHKRYGE---HEVLKGVSLQANAG--DVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKPAD 84 (256)
T ss_pred hHHHhhccc---chhhcceeeecCCC--CEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCeeeCC
Confidence 456666764 57999999998888 99999999999999999999999999999999887654 12334
Q ss_pred HHHHHHHHhhhcccCC----CcCCcchhhhHhhhc-cCCCCHHHHHHHHHHHhhhcC----CCeeeeccccchhchHHHH
Q psy11993 455 VEQLRTHVRHLCSLHP----AAKHGGREMVQLFEK-GYGKDPAEIAFRAISHARDMH----IDVVLIDTAGRMQDNEPLM 525 (630)
Q Consensus 455 ~eQLr~~~~~l~~~~~----~~~~tv~env~l~~~-~~~~d~~~ia~~ai~~a~~~~----~D~vlIDTaGr~~~~~~L~ 525 (630)
..|+++....++..++ +..+|+.+|+.-... -.+....+...+|..++..-+ .|......||++|++..++
T Consensus 85 ~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~YP~~LSGGQQQR~aIA 164 (256)
T COG4598 85 KRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAYPAHLSGGQQQRVAIA 164 (256)
T ss_pred HHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhhcCccccCchHHHHHHHH
Confidence 5677777666766555 557899999854321 223444455555555554333 2556788899999999999
Q ss_pred HHHHhhhhhcCCCeEEEEeccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcccCCcCccHHHHHHHHHHhCCcEE
Q psy11993 526 RALAKLVKVNQPDLLLFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTIDDKVGAAISMTYITGQPIV 605 (630)
Q Consensus 526 ~aL~kl~~~~~Pd~VLlV~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK~D~~~~~~G~~ls~~~~~g~PI~ 605 (630)
|+|+ ++| .+++.|||++.+|.-- ....-..++++++. +-+.+++|+ -.+.+-.+. --|.
T Consensus 165 RaLa-----meP-~vmLFDEPTSALDPEl-VgEVLkv~~~LAeE----grTMv~VTH------EM~FAR~Vs----s~v~ 223 (256)
T COG4598 165 RALA-----MEP-EVMLFDEPTSALDPEL-VGEVLKVMQDLAEE----GRTMVVVTH------EMGFARDVS----SHVI 223 (256)
T ss_pred HHHh-----cCC-ceEeecCCcccCCHHH-HHHHHHHHHHHHHh----CCeEEEEee------ehhHHHhhh----hheE
Confidence 9999 999 5666899999998642 22223344555442 567899996 234444433 3588
Q ss_pred EEecCC
Q psy11993 606 FVGTGQ 611 (630)
Q Consensus 606 fvg~Gq 611 (630)
|+-.|.
T Consensus 224 fLh~G~ 229 (256)
T COG4598 224 FLHQGK 229 (256)
T ss_pred Eeecce
Confidence 888774
No 180
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.58 E-value=4.1e-15 Score=149.18 Aligned_cols=167 Identities=16% Similarity=0.123 Sum_probs=116.9
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccCCCcCCcc
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHPAAKHGG 476 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~~~~~tv 476 (630)
.+|++++|.+.+| ++++|+||||+||||+++.|++++.+..|+|.+.+.++.+.... .++....++.+...+...|+
T Consensus 18 ~~l~~i~~~i~~G--e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~-~~~~~i~~~~q~~~l~~~tv 94 (221)
T cd03244 18 PVLKNISFSIKPG--EKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLH-DLRSRISIIPQDPVLFSGTI 94 (221)
T ss_pred ccccceEEEECCC--CEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHH-HHhhhEEEECCCCccccchH
Confidence 4899999999999 99999999999999999999999999999999988776443322 33445555555444445689
Q ss_pred hhhhHhhhccCCCCHHHHHHHHHHHhhh--------cCC----CeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEe
Q psy11993 477 REMVQLFEKGYGKDPAEIAFRAISHARD--------MHI----DVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVG 544 (630)
Q Consensus 477 ~env~l~~~~~~~d~~~ia~~ai~~a~~--------~~~----D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~ 544 (630)
.+|+.++.. ..... ..++++.+.. .++ +......||+++++..++++|. .+| .++++|
T Consensus 95 ~enl~~~~~---~~~~~-~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~-----~~p-~llllD 164 (221)
T cd03244 95 RSNLDPFGE---YSDEE-LWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALL-----RKS-KILVLD 164 (221)
T ss_pred HHHhCcCCC---CCHHH-HHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHh-----cCC-CEEEEe
Confidence 999875432 11211 1222221111 011 1234577999999999999999 888 466699
Q ss_pred ccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 545 EALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 545 E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
||+.|+|...+ ..+.+.+.++.. ..+.|++|+
T Consensus 165 EP~~~LD~~~~-~~l~~~l~~~~~-----~~tii~~sh 196 (221)
T cd03244 165 EATASVDPETD-ALIQKTIREAFK-----DCTVLTIAH 196 (221)
T ss_pred CccccCCHHHH-HHHHHHHHHhcC-----CCEEEEEeC
Confidence 99999998765 455666665532 346667776
No 181
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=99.58 E-value=2.8e-15 Score=151.99 Aligned_cols=188 Identities=20% Similarity=0.193 Sum_probs=127.4
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccCCCcCCcc
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHPAAKHGG 476 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~~~~~tv 476 (630)
.+|++++|.+.+| ++++|+||||+||||+++.|++.+.+..|+|.+.+.+..+... ..++....++.+...+...|+
T Consensus 16 ~~l~~isl~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~-~~~~~~i~~~~q~~~~~~~tv 92 (237)
T cd03252 16 VILDNISLRIKPG--EVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADP-AWLRRQVGVVLQENVLFNRSI 92 (237)
T ss_pred cceeceEEEEcCC--CEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCH-HHHhhcEEEEcCCchhccchH
Confidence 4789999999999 9999999999999999999999999999999998887643322 234445555555444445799
Q ss_pred hhhhHhhhccCCCCHHHHHHHHHH------Hhhhc--CC----CeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEe
Q psy11993 477 REMVQLFEKGYGKDPAEIAFRAIS------HARDM--HI----DVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVG 544 (630)
Q Consensus 477 ~env~l~~~~~~~d~~~ia~~ai~------~a~~~--~~----D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~ 544 (630)
.+|+.+..... ....+ ..+++ .+... ++ +..+...||+++++..++++|. .+| .++++|
T Consensus 93 ~~nl~~~~~~~--~~~~~-~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~-----~~p-~llllD 163 (237)
T cd03252 93 RDNIALADPGM--SMERV-IEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALI-----HNP-RILIFD 163 (237)
T ss_pred HHHhhccCCCC--CHHHH-HHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHh-----hCC-CEEEEe
Confidence 99997643221 12111 11111 11111 11 2235678999999999999999 788 566699
Q ss_pred ccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcccCCcCccHHHHHHHHHHhCCcEEEEecCCCC
Q psy11993 545 EALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGTGQTY 613 (630)
Q Consensus 545 E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK~D~~~~~~G~~ls~~~~~g~PI~fvg~Gq~v 613 (630)
||+.++|...+. .+.+.+.++.. +.+.|++|+- .-.+ .. .-.+..+..|+-+
T Consensus 164 EP~~~LD~~~~~-~l~~~l~~~~~-----~~tiii~sH~------~~~~----~~-~d~v~~l~~G~i~ 215 (237)
T cd03252 164 EATSALDYESEH-AIMRNMHDICA-----GRTVIIIAHR------LSTV----KN-ADRIIVMEKGRIV 215 (237)
T ss_pred CCcccCCHHHHH-HHHHHHHHhcC-----CCEEEEEeCC------HHHH----Hh-CCEEEEEECCEEE
Confidence 999999987754 45556665532 4567777761 1111 11 2367778777754
No 182
>KOG0055|consensus
Probab=99.58 E-value=4.5e-15 Score=175.47 Aligned_cols=194 Identities=21% Similarity=0.217 Sum_probs=142.6
Q ss_pred CCCc-chhhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccC
Q psy11993 391 SPKR-RVDILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLH 469 (630)
Q Consensus 391 ~~~~-~~~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~ 469 (630)
.|.+ ...+|++++|.+++| ++++||||+||||||++..|.+++.|..|.|+|.+.|... -....||.....+.|.+
T Consensus 360 YPsRpdv~Il~g~sl~i~~G--~~valVG~SGsGKST~i~LL~RfydP~~G~V~idG~di~~-~~~~~lr~~iglV~QeP 436 (1228)
T KOG0055|consen 360 YPSRPDVKILKGVSLKIPSG--QTVALVGPSGSGKSTLIQLLARFYDPTSGEVLIDGEDIRN-LNLKWLRSQIGLVSQEP 436 (1228)
T ss_pred CCCCCcchhhCCeEEEeCCC--CEEEEECCCCCCHHHHHHHHHHhcCCCCceEEEcCccchh-cchHHHHhhcCeeeech
Confidence 3555 478999999999999 9999999999999999999999999999999999999844 34568888888888877
Q ss_pred CCcCCcchhhhHhhhccCCCCHHHHHHHHHHHhh--------hcCCCeeeec----cccchhchHHHHHHHHhhhhhcCC
Q psy11993 470 PAAKHGGREMVQLFEKGYGKDPAEIAFRAISHAR--------DMHIDVVLID----TAGRMQDNEPLMRALAKLVKVNQP 537 (630)
Q Consensus 470 ~~~~~tv~env~l~~~~~~~d~~~ia~~ai~~a~--------~~~~D~vlID----TaGr~~~~~~L~~aL~kl~~~~~P 537 (630)
..+..|+++|+.+....- ...++ .+|.+.+. -.+||..+.+ +|||++||.+++|+|. .+|
T Consensus 437 vlF~~tI~eNI~~G~~da--t~~~i-~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSGGQKQRIAIARalv-----~~P 508 (1228)
T KOG0055|consen 437 VLFATTIRENIRYGKPDA--TREEI-EEAAKAANAHDFILKLPDGYDTLVGERGVQLSGGQKQRIAIARALV-----RNP 508 (1228)
T ss_pred hhhcccHHHHHhcCCCcc--cHHHH-HHHHHHccHHHHHHhhHHhhcccccCCCCCCChHHHHHHHHHHHHH-----hCC
Confidence 788899999998754211 11121 12221111 1356666544 5999999999999999 788
Q ss_pred CeEEEEeccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcccCCcCccHHHHHHHHHHhCCcEEEEecCCCC
Q psy11993 538 DLLLFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGTGQTY 613 (630)
Q Consensus 538 d~VLlV~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK~D~~~~~~G~~ls~~~~~g~PI~fvg~Gq~v 613 (630)
.||++||||+++|+... +...+++...+. +-+.||+++ +.-.+-+ + =-|.++-.|+-+
T Consensus 509 -~ILLLDEaTSaLD~~se-~~Vq~ALd~~~~-----grTTivVaH------RLStIrn-a----D~I~v~~~G~Iv 566 (1228)
T KOG0055|consen 509 -KILLLDEATSALDAESE-RVVQEALDKASK-----GRTTIVVAH------RLSTIRN-A----DKIAVMEEGKIV 566 (1228)
T ss_pred -CEEEecCcccccCHHHH-HHHHHHHHHhhc-----CCeEEEEee------ehhhhhc-c----CEEEEEECCEEE
Confidence 78889999999998875 334556654443 457788876 2222322 1 147777777765
No 183
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.58 E-value=1.1e-14 Score=149.18 Aligned_cols=193 Identities=18% Similarity=0.146 Sum_probs=128.8
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHh-----cCCeEEEeecccCCcc-HHHHHHHHHhhhcccCC
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIE-----NNLNVLIAACDTFRAG-AVEQLRTHVRHLCSLHP 470 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~-----~ggkVlI~~~Dt~R~g-a~eQLr~~~~~l~~~~~ 470 (630)
.+|++++|.+.+| ++++|+|+||+||||+++.|++.+.+ ..|+|.+.+.++.+.. ....++....++.+...
T Consensus 18 ~~l~~isl~i~~G--e~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~ 95 (251)
T PRK14270 18 QALNDINLPIYEN--KITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVVELRKRVGMVFQKPN 95 (251)
T ss_pred eeeeceeEEEcCC--CEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccHHHHHhheEEEecCCC
Confidence 4789999999999 99999999999999999999998864 6799999988774321 12233444555555444
Q ss_pred CcCCcchhhhHhhhccCCC-CHH---HHHHHHHHHhhhc-----CCCeeeeccccchhchHHHHHHHHhhhhhcCCCeEE
Q psy11993 471 AAKHGGREMVQLFEKGYGK-DPA---EIAFRAISHARDM-----HIDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLL 541 (630)
Q Consensus 471 ~~~~tv~env~l~~~~~~~-d~~---~ia~~ai~~a~~~-----~~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VL 541 (630)
...+|+.+|+.+....++. ... ..+..+++.+... ..+..+.+.||+++++..++++|. .+| .++
T Consensus 96 ~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~-----~~p-~ll 169 (251)
T PRK14270 96 PFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKKSALKLSGGQQQRLCIARTIA-----VKP-DVI 169 (251)
T ss_pred cCCCcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHHh-----cCC-CEE
Confidence 3348999999865433322 121 1223334333211 123446788999999999999999 788 577
Q ss_pred EEeccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcccCCcCccHHHHHHHHHHhCCcEEEEecCCCC
Q psy11993 542 FVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGTGQTY 613 (630)
Q Consensus 542 lV~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK~D~~~~~~G~~ls~~~~~g~PI~fvg~Gq~v 613 (630)
++|||+.|+|...+ ..+.+.+.++.. ..+.|++|+- ...+..++ --+..+..|+-+
T Consensus 170 llDEP~~~LD~~~~-~~l~~~L~~~~~-----~~tiiivsH~------~~~~~~~~----d~v~~l~~G~i~ 225 (251)
T PRK14270 170 LMDEPTSALDPIST-LKIEDLMVELKK-----EYTIVIVTHN------MQQASRVS----DYTAFFLMGDLI 225 (251)
T ss_pred EEeCCcccCCHHHH-HHHHHHHHHHHh-----CCeEEEEEcC------HHHHHHhc----CEEEEEECCeEE
Confidence 79999999998765 345556666542 2466777761 22222222 256667767643
No 184
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.58 E-value=8.4e-15 Score=164.66 Aligned_cols=208 Identities=12% Similarity=0.092 Sum_probs=137.2
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccC----CCc
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLH----PAA 472 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~----~~~ 472 (630)
.++++++|.+.+| ++++|+|||||||||+++.|++.+.+..|.|.+.+.+.........++.+..++.+.. .++
T Consensus 267 ~~l~~isl~i~~G--e~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~ 344 (501)
T PRK11288 267 GLREPISFSVRAG--EIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAGIMLCPEDRKAEGIIP 344 (501)
T ss_pred CcccceeEEEeCC--cEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCHHHHHhCCCEEcCcCHhhCCCcC
Confidence 3788999999999 9999999999999999999999999999999998776532222234444555666543 355
Q ss_pred CCcchhhhHhhhccC----C--CCHH---HHHHHHHHHhhhc--CCCeeeeccccchhchHHHHHHHHhhhhhcCCCeEE
Q psy11993 473 KHGGREMVQLFEKGY----G--KDPA---EIAFRAISHARDM--HIDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLL 541 (630)
Q Consensus 473 ~~tv~env~l~~~~~----~--~d~~---~ia~~ai~~a~~~--~~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VL 541 (630)
.+|+.+|+.+....+ + .... ..+.+.++.+... ..+..+-+.|||++++..++++|. .+| .+|
T Consensus 345 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrl~la~al~-----~~p-~ll 418 (501)
T PRK11288 345 VHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIMNLSGGNQQKAILGRWLS-----EDM-KVI 418 (501)
T ss_pred CCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCccccCCHHHHHHHHHHHHHc-----cCC-CEE
Confidence 689999986532111 1 0111 2233444444331 234557788999999999999998 788 566
Q ss_pred EEeccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcccCCcCccHHHHHHHHHHhCCcEEEEecCCCCc--cCCCC
Q psy11993 542 FVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGTGQTYT--DLKSL 619 (630)
Q Consensus 542 lV~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK~D~~~~~~G~~ls~~~~~g~PI~fvg~Gq~v~--DL~~~ 619 (630)
++|||+.|+|...+. .+.+.+.++.. .+.+.|++|+- ...+ ....--+.++..|+-+. +...+
T Consensus 419 lLDEPt~~LD~~~~~-~l~~~l~~l~~----~g~tviivsHd------~~~~----~~~~d~i~~l~~g~i~~~~~~~~~ 483 (501)
T PRK11288 419 LLDEPTRGIDVGAKH-EIYNVIYELAA----QGVAVLFVSSD------LPEV----LGVADRIVVMREGRIAGELAREQA 483 (501)
T ss_pred EEcCCCCCCCHhHHH-HHHHHHHHHHh----CCCEEEEECCC------HHHH----HhhCCEEEEEECCEEEEEEccccC
Confidence 799999999987654 34445555432 25678888872 1112 22223466666666443 34555
Q ss_pred CHHHHHHH
Q psy11993 620 NAKAVVNA 627 (630)
Q Consensus 620 ~~~~~v~~ 627 (630)
....++.+
T Consensus 484 ~~~~~~~~ 491 (501)
T PRK11288 484 TERQALSL 491 (501)
T ss_pred CHHHHHHH
Confidence 55555543
No 185
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=99.58 E-value=6.1e-15 Score=157.28 Aligned_cols=175 Identities=17% Similarity=0.119 Sum_probs=121.1
Q ss_pred hhhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHH--HHHHHHhhhcccC---C
Q psy11993 396 VDILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVE--QLRTHVRHLCSLH---P 470 (630)
Q Consensus 396 ~~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~e--QLr~~~~~l~~~~---~ 470 (630)
..+|++|+|.+.+| ++++|+|+|||||||++..|++++.+..|+|.+.+.|+.+....+ .++....++.+.. .
T Consensus 28 ~~~l~~vsl~i~~G--e~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~~~~~~~~r~~i~~v~Q~~~~~l 105 (327)
T PRK11308 28 VKALDGVSFTLERG--KTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADPEAQKLLRQKIQIVFQNPYGSL 105 (327)
T ss_pred eeEEeeeEEEECCC--CEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCCHHHHHHHhCCEEEEEcCchhhc
Confidence 45899999999999 999999999999999999999999999999999999886554321 2233344444432 1
Q ss_pred CcCCcchhhhHhhhccC-CCCHHHH---HHHHHHHhhhc--CCCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEe
Q psy11993 471 AAKHGGREMVQLFEKGY-GKDPAEI---AFRAISHARDM--HIDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVG 544 (630)
Q Consensus 471 ~~~~tv~env~l~~~~~-~~d~~~i---a~~ai~~a~~~--~~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~ 544 (630)
.+.+++.+++......+ +....+. +.++++.+... .++......||+|+++..++++|+ .+| .+|++|
T Consensus 106 ~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p~~LSgGq~QRv~iArAL~-----~~P-~lLilD 179 (327)
T PRK11308 106 NPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDRYPHMFSGGQRQRIAIARALM-----LDP-DVVVAD 179 (327)
T ss_pred CCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHHhcCCCccCCHHHHHHHHHHHHHH-----cCC-CEEEEE
Confidence 44578877775322211 2223222 33344433321 134456788999999999999999 889 566799
Q ss_pred ccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 545 EALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 545 E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
||+.++|...+...+ +.+.++.. ..+.+.|++|+
T Consensus 180 EPts~LD~~~~~~i~-~lL~~l~~---~~g~til~iTH 213 (327)
T PRK11308 180 EPVSALDVSVQAQVL-NLMMDLQQ---ELGLSYVFISH 213 (327)
T ss_pred CCCccCCHHHHHHHH-HHHHHHHH---HcCCEEEEEeC
Confidence 999999988765433 34444432 12577788886
No 186
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=99.58 E-value=9.5e-15 Score=147.95 Aligned_cols=166 Identities=19% Similarity=0.149 Sum_probs=114.7
Q ss_pred hhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccCC-CcCCcch
Q psy11993 399 LRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHP-AAKHGGR 477 (630)
Q Consensus 399 L~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~-~~~~tv~ 477 (630)
|++++|.+.+| ++++|+||||+||||+++.|++.+.+..|+|.+.+.+....... ..++.+... ++.+|+.
T Consensus 1 l~~is~~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~------~~~v~q~~~l~~~~tv~ 72 (230)
T TIGR01184 1 LKGVNLTIQQG--EFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPD------RMVVFQNYSLLPWLTVR 72 (230)
T ss_pred CCceeEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChh------heEEecCcccCCCCCHH
Confidence 45788999999 99999999999999999999999999999999988776432211 123444332 4558999
Q ss_pred hhhHhhhcc--CCCCHHH---HHHHHHHHhhhcC-CCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCcc
Q psy11993 478 EMVQLFEKG--YGKDPAE---IAFRAISHARDMH-IDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNE 551 (630)
Q Consensus 478 env~l~~~~--~~~d~~~---ia~~ai~~a~~~~-~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~D 551 (630)
+|+.+.... ...+... .+.++++.+.... .+..+...|||++++..++++|. .+| .++++|||+.|+|
T Consensus 73 e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~-----~~p-~lllLDEPt~gLD 146 (230)
T TIGR01184 73 ENIALAVDRVLPDLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALS-----IRP-KVLLLDEPFGALD 146 (230)
T ss_pred HHHHHHHHhcccCCCHHHHHHHHHHHHHHcCCHHHHcCChhhCCHHHHHHHHHHHHHH-----cCC-CEEEEcCCCcCCC
Confidence 999775221 1222222 2233343332221 23456778999999999999999 888 5666999999999
Q ss_pred HHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 552 AVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 552 av~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
...+. .+.+.+.++... .+.+.|++|+
T Consensus 147 ~~~~~-~l~~~l~~~~~~---~~~tii~~sH 173 (230)
T TIGR01184 147 ALTRG-NLQEELMQIWEE---HRVTVLMVTH 173 (230)
T ss_pred HHHHH-HHHHHHHHHHHh---cCCEEEEEeC
Confidence 87653 455555554321 2466778776
No 187
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=99.57 E-value=7.5e-15 Score=148.06 Aligned_cols=171 Identities=16% Similarity=0.080 Sum_probs=117.8
Q ss_pred hhhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHH---hcCCeEEEeecccCCccHHHHHHHHHhhhcccCC-C
Q psy11993 396 VDILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLI---ENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHP-A 471 (630)
Q Consensus 396 ~~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~---~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~-~ 471 (630)
..+|++++|.+.+| ++++|+||||+||||+++.|++.+. +..|+|.+.+.+... ..++....++.+... +
T Consensus 20 ~~~l~~vsl~i~~G--e~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~----~~~~~~i~~~~q~~~~~ 93 (226)
T cd03234 20 ARILNDVSLHVESG--QVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKP----DQFQKCVAYVRQDDILL 93 (226)
T ss_pred cccccCceEEEcCC--eEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECCh----HHhcccEEEeCCCCccC
Confidence 45889999999999 9999999999999999999999998 889999998877621 123333444444332 4
Q ss_pred cCCcchhhhHhhhccCC--C-CHHHH---HHH-HHHHhhhcC-CCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEE
Q psy11993 472 AKHGGREMVQLFEKGYG--K-DPAEI---AFR-AISHARDMH-IDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFV 543 (630)
Q Consensus 472 ~~~tv~env~l~~~~~~--~-d~~~i---a~~-ai~~a~~~~-~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV 543 (630)
+.+|+.+|+.+...... . ..... +.. .+....... .+..+...||+++++..++++|. .+| .++++
T Consensus 94 ~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~-----~~p-~illl 167 (226)
T cd03234 94 PGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVKGISGGERRRVSIAVQLL-----WDP-KVLIL 167 (226)
T ss_pred cCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhcccccCcCHHHHHHHHHHHHHH-----hCC-CEEEE
Confidence 56799999986532211 1 11111 111 222222111 12345678999999999999999 778 56779
Q ss_pred eccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEccc
Q psy11993 544 GEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKF 583 (630)
Q Consensus 544 ~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK~ 583 (630)
|||+.|+|...+ ..|.+.+.++.. .+.+.+++|+-
T Consensus 168 DEP~~gLD~~~~-~~~~~~l~~~~~----~~~tiii~sh~ 202 (226)
T cd03234 168 DEPTSGLDSFTA-LNLVSTLSQLAR----RNRIVILTIHQ 202 (226)
T ss_pred eCCCcCCCHHHH-HHHHHHHHHHHH----CCCEEEEEecC
Confidence 999999998765 455566666543 24667777763
No 188
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=99.57 E-value=4.5e-15 Score=148.74 Aligned_cols=168 Identities=20% Similarity=0.142 Sum_probs=115.2
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccCCCcCCcc
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHPAAKHGG 476 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~~~~~tv 476 (630)
.+|++++|.+.+| ++++|+||||+||||+++.|++.+.+..|+|.+.+.++..... ..++....++.+...+...|+
T Consensus 18 ~~l~~i~~~i~~G--~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~-~~~~~~i~~~~q~~~~~~~tv 94 (220)
T cd03245 18 PALDNVSLTIRAG--EKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDP-ADLRRNIGYVPQDVTLFYGTL 94 (220)
T ss_pred ccccceEEEEcCC--CEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCH-HHHHhhEEEeCCCCccccchH
Confidence 4789999999999 9999999999999999999999999999999998876533222 223444455555433334689
Q ss_pred hhhhHhhhccCCCCHHHHHHHHHHHhhhc--------CCCe----eeeccccchhchHHHHHHHHhhhhhcCCCeEEEEe
Q psy11993 477 REMVQLFEKGYGKDPAEIAFRAISHARDM--------HIDV----VLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVG 544 (630)
Q Consensus 477 ~env~l~~~~~~~d~~~ia~~ai~~a~~~--------~~D~----vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~ 544 (630)
.+|+.+..... .... +.++++.+... +++. ...+.||+++++..++++|. .+| .++++|
T Consensus 95 ~e~l~~~~~~~--~~~~-~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~-----~~p-~llllD 165 (220)
T cd03245 95 RDNITLGAPLA--DDER-ILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALL-----NDP-PILLLD 165 (220)
T ss_pred HHHhhcCCCCC--CHHH-HHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHh-----cCC-CEEEEe
Confidence 99986643211 2211 22222222111 1111 13478999999999999999 788 466699
Q ss_pred ccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 545 EALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 545 E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
||+.|+|...+ ..+.+.+.++.. ..+.|++|+
T Consensus 166 EPt~~LD~~~~-~~l~~~l~~~~~-----~~tii~~sH 197 (220)
T cd03245 166 EPTSAMDMNSE-ERLKERLRQLLG-----DKTLIIITH 197 (220)
T ss_pred CccccCCHHHH-HHHHHHHHHhcC-----CCEEEEEeC
Confidence 99999998876 445566666643 256677776
No 189
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=99.57 E-value=8.7e-15 Score=150.41 Aligned_cols=172 Identities=20% Similarity=0.151 Sum_probs=120.9
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccCC-CcCCc
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHP-AAKHG 475 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~-~~~~t 475 (630)
.+|++++|.+.+| ++++|+||||+||||+++.|++.+.+..|+|.+.+.++.+... ..++....++.+... .+.+|
T Consensus 15 ~il~~is~~i~~G--e~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~-~~~~~~i~~~~q~~~~~~~~t 91 (256)
T TIGR03873 15 LIVDGVDVTAPPG--SLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSR-RARARRVALVEQDSDTAVPLT 91 (256)
T ss_pred EEEeeeeEEEcCC--cEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCH-HHHhhheEEecccCccCCCCC
Confidence 4899999999999 9999999999999999999999999999999998887654332 233444455555432 44579
Q ss_pred chhhhHhhhcc----CCCC---HHHHHHHHHHHhhhcC-CCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccc
Q psy11993 476 GREMVQLFEKG----YGKD---PAEIAFRAISHARDMH-IDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEAL 547 (630)
Q Consensus 476 v~env~l~~~~----~~~d---~~~ia~~ai~~a~~~~-~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~ 547 (630)
+.+|+.+.... +... ....+.++++.+.... .+..+...||+++++..++++|. .+| .++++|||+
T Consensus 92 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~-----~~p-~llllDEPt 165 (256)
T TIGR03873 92 VRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDMSTLSGGERQRVHVARALA-----QEP-KLLLLDEPT 165 (256)
T ss_pred HHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHh-----cCC-CEEEEcCcc
Confidence 99998764211 1111 1122334444333222 24456788999999999999999 788 566699999
Q ss_pred cCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 548 VGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 548 ~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
.|+|.... ..+.+.+.++.. .+.+.|++|+
T Consensus 166 ~~LD~~~~-~~l~~~l~~~~~----~~~tiii~sH 195 (256)
T TIGR03873 166 NHLDVRAQ-LETLALVRELAA----TGVTVVAALH 195 (256)
T ss_pred ccCCHHHH-HHHHHHHHHHHh----cCCEEEEEeC
Confidence 99998654 445556665542 1456677776
No 190
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.57 E-value=8.3e-15 Score=148.41 Aligned_cols=171 Identities=17% Similarity=0.083 Sum_probs=120.5
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccCC-CcCCc
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHP-AAKHG 475 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~-~~~~t 475 (630)
.+|++++|.+.+| ++++|+|+||+||||+++.|++.+.+..|+|.+.+.+.....+. +....++.+... +..+|
T Consensus 14 ~il~~i~~~i~~G--e~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~---~~~i~~~~q~~~~~~~~t 88 (232)
T cd03300 14 VALDGVSLDIKEG--EFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPPH---KRPVNTVFQNYALFPHLT 88 (232)
T ss_pred eeeccceEEECCC--CEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChh---hcceEEEecccccCCCCc
Confidence 4789999999999 99999999999999999999999999999999988877543332 223444444333 34579
Q ss_pred chhhhHhhhccCCCCHHH---HHHHHHHHhhhcC-CCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCcc
Q psy11993 476 GREMVQLFEKGYGKDPAE---IAFRAISHARDMH-IDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNE 551 (630)
Q Consensus 476 v~env~l~~~~~~~d~~~---ia~~ai~~a~~~~-~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~D 551 (630)
+.+|+.+....++.++.. .+..+++.+.... .+..+.+.|++++++..++++|. .+| .++++|||+.|+|
T Consensus 89 ~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~-----~~p-~llllDEP~~gLD 162 (232)
T cd03300 89 VFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALV-----NEP-KVLLLDEPLGALD 162 (232)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHh-----cCC-CEEEEcCCcccCC
Confidence 999987543322222221 2223333333221 24446778999999999999999 788 5666999999999
Q ss_pred HHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 552 AVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 552 av~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
...+ ..|.+.+.++... .+.+.+|+|+
T Consensus 163 ~~~~-~~l~~~l~~~~~~---~~~tiii~sh 189 (232)
T cd03300 163 LKLR-KDMQLELKRLQKE---LGITFVFVTH 189 (232)
T ss_pred HHHH-HHHHHHHHHHHHH---cCCEEEEEeC
Confidence 8765 4566666665431 1467788876
No 191
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.57 E-value=1.6e-14 Score=147.78 Aligned_cols=172 Identities=17% Similarity=0.105 Sum_probs=117.7
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHh-----cCCeEEEeecccCCccHHHHHHHHHhhhcccCCC
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIE-----NNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHPA 471 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~-----~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~~ 471 (630)
.+|++++|.+.+| ++++|+||||+||||+++.|++.+.+ ..|+|.+.+.++........++....++.+...+
T Consensus 17 ~~l~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~q~~~~ 94 (249)
T PRK14253 17 QALKSINLPIPAR--QVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVADLRIKVGMVFQKPNP 94 (249)
T ss_pred eeeecceEEecCC--CEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHHHHhheeEEecCCCc
Confidence 4789999999999 99999999999999999999999875 4799999887763211122344555566554443
Q ss_pred cCCcchhhhHhhhccCCCC-HHH---HHHHHHHHhhh-----cCCCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEE
Q psy11993 472 AKHGGREMVQLFEKGYGKD-PAE---IAFRAISHARD-----MHIDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLF 542 (630)
Q Consensus 472 ~~~tv~env~l~~~~~~~d-~~~---ia~~ai~~a~~-----~~~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLl 542 (630)
...|+.+|+.+....++.. ... .+..+++.+.. ...+..+...||+++++..++++|. .+| .+++
T Consensus 95 ~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~-----~~p-~lll 168 (249)
T PRK14253 95 FPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLSGGQQQRLCIARTIA-----MEP-DVIL 168 (249)
T ss_pred CcccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhhHHhhcCcccCCHHHHHHHHHHHHHH-----cCC-CEEE
Confidence 3479999997643222221 111 12222322221 0123345678999999999999999 788 5667
Q ss_pred EeccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 543 VGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 543 V~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
+|||+.|+|...+ ..+.+.+.++.. ..+.|++|+
T Consensus 169 lDEP~~~LD~~~~-~~l~~~l~~~~~-----~~tii~~sh 202 (249)
T PRK14253 169 MDEPTSALDPIAT-HKIEELMEELKK-----NYTIVIVTH 202 (249)
T ss_pred EeCCCccCCHHHH-HHHHHHHHHHhc-----CCeEEEEec
Confidence 9999999998764 445556666542 356777776
No 192
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.57 E-value=1.2e-14 Score=148.89 Aligned_cols=172 Identities=16% Similarity=0.117 Sum_probs=118.2
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHH-----hcCCeEEEeecccCCcc-HHHHHHHHHhhhcccCC
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLI-----ENNLNVLIAACDTFRAG-AVEQLRTHVRHLCSLHP 470 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~-----~~ggkVlI~~~Dt~R~g-a~eQLr~~~~~l~~~~~ 470 (630)
.+|++++|.+.+| ++++|+|+||+||||+++.|++.+. +..|+|.+.+.+..... ....++....++.+...
T Consensus 18 ~~l~~~sl~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~~~~~~i~~~~q~~~ 95 (251)
T PRK14251 18 EALHGISLDFEEK--ELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLVELRKEVGMVFQQPT 95 (251)
T ss_pred eeeeeeeEEEcCC--CEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchHHHhhccEEEEecCCc
Confidence 4789999999999 9999999999999999999999986 36899999988764211 12233444555555444
Q ss_pred CcCCcchhhhHhhhccCCC-CHH---HHHHHHHHHhhh-----cCCCeeeeccccchhchHHHHHHHHhhhhhcCCCeEE
Q psy11993 471 AAKHGGREMVQLFEKGYGK-DPA---EIAFRAISHARD-----MHIDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLL 541 (630)
Q Consensus 471 ~~~~tv~env~l~~~~~~~-d~~---~ia~~ai~~a~~-----~~~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VL 541 (630)
....|+.+|+.+....++. ... ..+..+++.+.. ...+..+...||+++++..++++|. .+| .++
T Consensus 96 ~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~laral~-----~~p-~ll 169 (251)
T PRK14251 96 PFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQRICIARALA-----VRP-KVV 169 (251)
T ss_pred cCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchHHHhccChhhCCHHHHHHHHHHHHHh-----cCC-CEE
Confidence 3347999999765332222 111 112233333222 1123446678999999999999999 788 466
Q ss_pred EEeccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 542 FVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 542 lV~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
++|||+.++|...+ ..+.+.+.++.. ..+.|++|+
T Consensus 170 llDEP~~~LD~~~~-~~l~~~l~~~~~-----~~tiiiisH 204 (251)
T PRK14251 170 LLDEPTSALDPISS-SEIEETLMELKH-----QYTFIMVTH 204 (251)
T ss_pred EecCCCccCCHHHH-HHHHHHHHHHHc-----CCeEEEEEC
Confidence 69999999998764 455566665532 356778886
No 193
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=99.57 E-value=9.5e-15 Score=155.72 Aligned_cols=174 Identities=17% Similarity=0.084 Sum_probs=118.2
Q ss_pred hhhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHh----cCCeEEEeecccCCccHHHHHHHH----Hhhhcc
Q psy11993 396 VDILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIE----NNLNVLIAACDTFRAGAVEQLRTH----VRHLCS 467 (630)
Q Consensus 396 ~~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~----~ggkVlI~~~Dt~R~ga~eQLr~~----~~~l~~ 467 (630)
..+|++|+|.+.+| ++++|+|+|||||||++..|++++.+ +.|+|.+.+.|+..... .+++.+ ..++.+
T Consensus 20 ~~~l~~vsl~i~~G--e~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~-~~~~~~r~~~i~~v~Q 96 (326)
T PRK11022 20 FRAVDRISYSVKQG--EVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISE-KERRNLVGAEVAMIFQ 96 (326)
T ss_pred EEEEeeeEEEECCC--CEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCH-HHHHHHhCCCEEEEec
Confidence 35899999999999 99999999999999999999999863 68999999998865443 233332 344444
Q ss_pred cC---CCcCCcchhhhHhhhcc-CCCCHHH---HHHHHHHHhhhcC----CCeeeeccccchhchHHHHHHHHhhhhhcC
Q psy11993 468 LH---PAAKHGGREMVQLFEKG-YGKDPAE---IAFRAISHARDMH----IDVVLIDTAGRMQDNEPLMRALAKLVKVNQ 536 (630)
Q Consensus 468 ~~---~~~~~tv~env~l~~~~-~~~d~~~---ia~~ai~~a~~~~----~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~ 536 (630)
.. ..+.+++.+++...... .+....+ .+.++++.+.... .+......||||+++..++++|+ .+
T Consensus 97 ~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~~LSgGq~QRv~iArAL~-----~~ 171 (326)
T PRK11022 97 DPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQRVMIAMAIA-----CR 171 (326)
T ss_pred CchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHHHHHHHHH-----hC
Confidence 32 24456776665432221 1222222 2333444333321 13346678999999999999999 89
Q ss_pred CCeEEEEeccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 537 PDLLLFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 537 Pd~VLlV~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
| .+|++|||++++|...+...+ +.+.++.. ..+.+.+++|+
T Consensus 172 P-~llilDEPts~LD~~~~~~il-~lL~~l~~---~~g~til~iTH 212 (326)
T PRK11022 172 P-KLLIADEPTTALDVTIQAQII-ELLLELQQ---KENMALVLITH 212 (326)
T ss_pred C-CEEEEeCCCCCCCHHHHHHHH-HHHHHHHH---hcCCEEEEEeC
Confidence 9 566699999999988765433 34444432 12577888887
No 194
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=99.57 E-value=6.1e-15 Score=142.87 Aligned_cols=139 Identities=23% Similarity=0.186 Sum_probs=101.3
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccCCCcCCcc
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHPAAKHGG 476 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~~~~~tv 476 (630)
.++++++|.+.+| ++++|+||||+||||++..|++.+.+..|+|.+.+.++..... ..++....++.+.......|+
T Consensus 16 ~~l~~~~~~i~~G--e~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~-~~~~~~i~~~~q~~~~~~~tv 92 (173)
T cd03246 16 PVLRNVSFSIEPG--ESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDP-NELGDHVGYLPQDDELFSGSI 92 (173)
T ss_pred cceeeeEEEECCC--CEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCH-HHHHhheEEECCCCccccCcH
Confidence 4788999999999 9999999999999999999999999999999998877643322 233333333333211111222
Q ss_pred hhhhHhhhccCCCCHHHHHHHHHHHhhhcCCCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCccHHHHH
Q psy11993 477 REMVQLFEKGYGKDPAEIAFRAISHARDMHIDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQL 556 (630)
Q Consensus 477 ~env~l~~~~~~~d~~~ia~~ai~~a~~~~~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~Dav~ql 556 (630)
.+|+ .||+++++..++++|. .+| .++++|||+.++|...+.
T Consensus 93 ~~~l---------------------------------LS~G~~qrv~la~al~-----~~p-~~lllDEPt~~LD~~~~~ 133 (173)
T cd03246 93 AENI---------------------------------LSGGQRQRLGLARALY-----GNP-RILVLDEPNSHLDVEGER 133 (173)
T ss_pred HHHC---------------------------------cCHHHHHHHHHHHHHh-----cCC-CEEEEECCccccCHHHHH
Confidence 2222 8999999999999999 788 566699999999987654
Q ss_pred HHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 557 VKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 557 ~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
.+.+.+.++.. .+.+.+++|+
T Consensus 134 -~l~~~l~~~~~----~~~tii~~sh 154 (173)
T cd03246 134 -ALNQAIAALKA----AGATRIVIAH 154 (173)
T ss_pred -HHHHHHHHHHh----CCCEEEEEeC
Confidence 44555655542 2467777776
No 195
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=99.57 E-value=7.8e-15 Score=150.68 Aligned_cols=172 Identities=22% Similarity=0.196 Sum_probs=119.7
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccCC-CcCCc
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHP-AAKHG 475 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~-~~~~t 475 (630)
.+|++++|.+.+| ++++|+|+||+||||+++.|++.+.+..|+|.+.+.+..+... ..++....++.+... ++.+|
T Consensus 16 ~il~~is~~i~~G--e~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~-~~~~~~i~~~~q~~~~~~~~t 92 (255)
T PRK11231 16 RILNDLSLSLPTG--KITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSS-RQLARRLALLPQHHLTPEGIT 92 (255)
T ss_pred EEEeeeeeEEcCC--cEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCH-HHHhhheEEecccCCCCCCcc
Confidence 4789999999999 9999999999999999999999999999999998876543222 233444445544333 44568
Q ss_pred chhhhHhhhcc----CCC---CHHHHHHHHHHHhhhcC-CCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccc
Q psy11993 476 GREMVQLFEKG----YGK---DPAEIAFRAISHARDMH-IDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEAL 547 (630)
Q Consensus 476 v~env~l~~~~----~~~---d~~~ia~~ai~~a~~~~-~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~ 547 (630)
+.+|+.+.... .+. .....+..+++.+.... .+..+.+.|||++++..++++|. .+| .++++|||+
T Consensus 93 v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~-----~~p-~llllDEP~ 166 (255)
T PRK11231 93 VRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRLTDLSGGQRQRAFLAMVLA-----QDT-PVVLLDEPT 166 (255)
T ss_pred HHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCcccCCHHHHHHHHHHHHHh-----cCC-CEEEEcCCc
Confidence 99998764211 111 11122333343332211 24456788999999999999999 888 566699999
Q ss_pred cCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 548 VGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 548 ~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
.|+|...+ ..+.+.+.++.. .+.+.|++|+
T Consensus 167 ~~LD~~~~-~~l~~~l~~l~~----~~~tiii~tH 196 (255)
T PRK11231 167 TYLDINHQ-VELMRLMRELNT----QGKTVVTVLH 196 (255)
T ss_pred ccCCHHHH-HHHHHHHHHHHH----CCCEEEEEEC
Confidence 99998765 455566665532 2467788876
No 196
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.57 E-value=1.7e-14 Score=159.00 Aligned_cols=218 Identities=15% Similarity=0.119 Sum_probs=159.2
Q ss_pred HHHHHcCCCcchhhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhh
Q psy11993 385 ALVQILSPKRRVDILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRH 464 (630)
Q Consensus 385 ~L~~il~~~~~~~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~ 464 (630)
.+++-|++ +.+|++++|.+.+| ++++|+|.||+|||||++.|++.+.|+.|.|.+.+......+..+..+.-...
T Consensus 13 ~i~K~Fgg---V~AL~~v~l~v~~G--EV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~~GI~~ 87 (500)
T COG1129 13 GISKSFGG---VKALDGVSLTVRPG--EVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAAGIAT 87 (500)
T ss_pred cceEEcCC---ceeeccceeEEeCc--eEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHHHhCCcEE
Confidence 34455543 57899999999999 99999999999999999999999999999999998776545544443333344
Q ss_pred hcccC-CCcCCcchhhhHhhhccCC----CCHHHHHHHHHHHhhhcC----CCeeeeccccchhchHHHHHHHHhhhhhc
Q psy11993 465 LCSLH-PAAKHGGREMVQLFEKGYG----KDPAEIAFRAISHARDMH----IDVVLIDTAGRMQDNEPLMRALAKLVKVN 535 (630)
Q Consensus 465 l~~~~-~~~~~tv~env~l~~~~~~----~d~~~ia~~ai~~a~~~~----~D~vlIDTaGr~~~~~~L~~aL~kl~~~~ 535 (630)
+.|.. ..+.+|+.+|+.+...... .|...+..+|...+...+ .+..+-+.+.+.+|-..++++|. .
T Consensus 88 V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~~LsiaqrQ~VeIArAl~-----~ 162 (500)
T COG1129 88 VHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVGDLSIAQRQMVEIARALS-----F 162 (500)
T ss_pred EeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhhhCCHHHHHHHHHHHHHh-----c
Confidence 44432 3788999999987643222 455555555555444333 45567788899999999999998 5
Q ss_pred CCCeEEEEeccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcc-cCCcCccHHHHHHHHHHhCCcEEEEecCCCCc
Q psy11993 536 QPDLLLFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTK-FDTIDDKVGAAISMTYITGQPIVFVGTGQTYT 614 (630)
Q Consensus 536 ~Pd~VLlV~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK-~D~~~~~~G~~ls~~~~~g~PI~fvg~Gq~v~ 614 (630)
++ .+|++||||+.+...+....| +.++++.. .++..|.+|+ +|+ ++.++. .|.-+-.|+.+.
T Consensus 163 ~a-rllIlDEPTaaLt~~E~~~Lf-~~ir~Lk~----~Gv~ii~ISHrl~E-------i~~i~D----ritVlRDG~~v~ 225 (500)
T COG1129 163 DA-RVLILDEPTAALTVKETERLF-DLIRRLKA----QGVAIIYISHRLDE-------VFEIAD----RITVLRDGRVVG 225 (500)
T ss_pred CC-CEEEEcCCcccCCHHHHHHHH-HHHHHHHh----CCCEEEEEcCcHHH-------HHHhcC----EEEEEeCCEEee
Confidence 55 577799999999876654444 45555543 4788888886 444 444444 578888999885
Q ss_pred --c-CCCCCHHHHHHHhh
Q psy11993 615 --D-LKSLNAKAVVNALM 629 (630)
Q Consensus 615 --D-L~~~~~~~~v~~Ll 629 (630)
+ +..++.+.++++|.
T Consensus 226 ~~~~~~~~~~~~lv~~Mv 243 (500)
T COG1129 226 TRPTAAETSEDELVRLMV 243 (500)
T ss_pred ecccccCCCHHHHHHHhh
Confidence 5 57999999999875
No 197
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.57 E-value=8.6e-15 Score=148.67 Aligned_cols=170 Identities=15% Similarity=0.124 Sum_probs=119.9
Q ss_pred hhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccCC-CcCCcc
Q psy11993 398 ILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHP-AAKHGG 476 (630)
Q Consensus 398 iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~-~~~~tv 476 (630)
+|++++|.+.+| ++++|+||||+||||++..|++.+.+..|.|.+.+.++...... +....++.+... ++.+|+
T Consensus 14 ~l~~is~~i~~G--e~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~~---~~~i~~~~q~~~~~~~~t~ 88 (235)
T cd03299 14 KLKNVSLEVERG--DYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPE---KRDISYVPQNYALFPHMTV 88 (235)
T ss_pred eeeeeEEEEcCC--cEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCChh---HcCEEEEeecCccCCCccH
Confidence 688999999999 99999999999999999999999999999999999887653321 233444444333 456899
Q ss_pred hhhhHhhhccCCCCHHHH---HHHHHHHhhhcC-CCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCccH
Q psy11993 477 REMVQLFEKGYGKDPAEI---AFRAISHARDMH-IDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEA 552 (630)
Q Consensus 477 ~env~l~~~~~~~d~~~i---a~~ai~~a~~~~-~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~Da 552 (630)
.+|+.+.....+.+.... +.++++.+.... .+..+...||+++++..++++|. ..| .++++|||+.|+|.
T Consensus 89 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~-----~~p-~llllDEPt~gLD~ 162 (235)
T cd03299 89 YKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARALV-----VNP-KILLLDEPFSALDV 162 (235)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHHhcCcccCCHHHHHHHHHHHHHH-----cCC-CEEEECCCcccCCH
Confidence 999976433333222222 233333332211 24446678999999999999999 888 46669999999998
Q ss_pred HHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 553 VDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 553 v~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
..+. .+.+.+.++.. ..+.+.+++|+
T Consensus 163 ~~~~-~l~~~l~~~~~---~~~~tili~tH 188 (235)
T cd03299 163 RTKE-KLREELKKIRK---EFGVTVLHVTH 188 (235)
T ss_pred HHHH-HHHHHHHHHHH---hcCCEEEEEec
Confidence 7764 44555555432 12567788886
No 198
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.57 E-value=7.6e-15 Score=165.19 Aligned_cols=173 Identities=16% Similarity=0.119 Sum_probs=120.7
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHh--cCCeEEEeecccCCccHHHHHHHHHhhhcccCC-CcC
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIE--NNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHP-AAK 473 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~--~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~-~~~ 473 (630)
.+|++++|.+.+| ++++|+|||||||||+++.|++.+.+ ..|+|.+.+.++.+....+..+....++.+... ++.
T Consensus 19 ~il~~isl~i~~G--e~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 96 (506)
T PRK13549 19 KALDNVSLKVRAG--EIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTERAGIAIIHQELALVKE 96 (506)
T ss_pred EeecceeEEEeCC--eEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHHCCeEEEEeccccCCC
Confidence 4899999999999 99999999999999999999999886 789999998887433322222233444444332 556
Q ss_pred CcchhhhHhhhccC--C-CCHH---HHHHHHHHHhhhcC-CCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEecc
Q psy11993 474 HGGREMVQLFEKGY--G-KDPA---EIAFRAISHARDMH-IDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEA 546 (630)
Q Consensus 474 ~tv~env~l~~~~~--~-~d~~---~ia~~ai~~a~~~~-~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~ 546 (630)
+|+.+|+.+....+ + .+.. ..+.++++.+.... .+..+-+.|||++++..++++|. .+| .+|++|||
T Consensus 97 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~-----~~p-~lllLDEP 170 (506)
T PRK13549 97 LSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPVGNLGLGQQQLVEIAKALN-----KQA-RLLILDEP 170 (506)
T ss_pred CcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHh-----cCC-CEEEEeCC
Confidence 89999997753221 1 1222 22334444433322 24456788999999999999999 888 56779999
Q ss_pred ccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 547 LVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 547 ~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
++++|...+.. +.+.+.++.. .+.+.|++|+
T Consensus 171 t~~LD~~~~~~-l~~~l~~l~~----~~~tvi~~tH 201 (506)
T PRK13549 171 TASLTESETAV-LLDIIRDLKA----HGIACIYISH 201 (506)
T ss_pred CCCCCHHHHHH-HHHHHHHHHH----CCCEEEEEeC
Confidence 99999876543 4445555532 2466777786
No 199
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.57 E-value=9.7e-15 Score=152.80 Aligned_cols=172 Identities=19% Similarity=0.149 Sum_probs=118.3
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHH-----hcCCeEEEeecccCCcc-HHHHHHHHHhhhcccCC
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLI-----ENNLNVLIAACDTFRAG-AVEQLRTHVRHLCSLHP 470 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~-----~~ggkVlI~~~Dt~R~g-a~eQLr~~~~~l~~~~~ 470 (630)
.+|++++|.+.+| ++++|+||||+||||+++.|++.+. +..|+|.+.+.++.+.. ....++....++.+...
T Consensus 53 ~il~~is~~i~~G--e~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~~~~i~~v~q~~~ 130 (285)
T PRK14254 53 QALDDVSMDIPEN--QVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVDPVALRRRIGMVFQKPN 130 (285)
T ss_pred eeEeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccchHhhhccEEEEecCCc
Confidence 4789999999999 9999999999999999999999986 57899999887764321 11233444455554433
Q ss_pred CcCCcchhhhHhhhccCCCCH--HHHHHHHHHHhhhc-----CCCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEE
Q psy11993 471 AAKHGGREMVQLFEKGYGKDP--AEIAFRAISHARDM-----HIDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFV 543 (630)
Q Consensus 471 ~~~~tv~env~l~~~~~~~d~--~~ia~~ai~~a~~~-----~~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV 543 (630)
....++.+|+.+.....+... ...+..+++.+... ..+.-+...|||++++..++++|. .+| .+|++
T Consensus 131 l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LSgGe~qrv~LAraL~-----~~p-~lLLL 204 (285)
T PRK14254 131 PFPKSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVKDQLDSSGLDLSGGQQQRLCIARAIA-----PDP-EVILM 204 (285)
T ss_pred cCcCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchhHHHHhCCcccCCHHHHHHHHHHHHHH-----cCC-CEEEE
Confidence 233589999976432222111 12233333333211 123446788999999999999999 788 56779
Q ss_pred eccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 544 GEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 544 ~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
|||+.|+|...+ ..+.+.+.++.. ..+.|++|+
T Consensus 205 DEPts~LD~~~~-~~l~~~L~~~~~-----~~tiii~tH 237 (285)
T PRK14254 205 DEPASALDPVAT-SKIEDLIEELAE-----EYTVVIVTH 237 (285)
T ss_pred eCCCCCCCHHHH-HHHHHHHHHHhc-----CCEEEEEeC
Confidence 999999998765 455566766643 246677776
No 200
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.57 E-value=1.1e-14 Score=149.23 Aligned_cols=172 Identities=17% Similarity=0.169 Sum_probs=118.1
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHH--h---cCCeEEEeecccCCcc-HHHHHHHHHhhhcccCC
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLI--E---NNLNVLIAACDTFRAG-AVEQLRTHVRHLCSLHP 470 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~--~---~ggkVlI~~~Dt~R~g-a~eQLr~~~~~l~~~~~ 470 (630)
.+|++++|.+.+| ++++|+|+|||||||+++.|++.+. + ..|+|.+.+.++.+.. ...+++....++.+...
T Consensus 18 ~~l~~isl~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~~ 95 (252)
T PRK14256 18 HAVKDVSMDFPEN--SVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVSIRRRVGMVFQKPN 95 (252)
T ss_pred eEEecceEEEcCC--CEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCChHHhhccEEEEecCCC
Confidence 4799999999999 9999999999999999999999885 3 5799999988775321 12234444555555433
Q ss_pred -CcCCcchhhhHhhhccCC-CCHH---HHHHHHHHHhhhc-----CCCeeeeccccchhchHHHHHHHHhhhhhcCCCeE
Q psy11993 471 -AAKHGGREMVQLFEKGYG-KDPA---EIAFRAISHARDM-----HIDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLL 540 (630)
Q Consensus 471 -~~~~tv~env~l~~~~~~-~d~~---~ia~~ai~~a~~~-----~~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~V 540 (630)
++.+|+.+|+.+.....+ .+.. ..+.++++.+... ..+..+.+.||+++++..++++|. .+| .+
T Consensus 96 ~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral~-----~~p-~l 169 (252)
T PRK14256 96 PFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQRLCIARTIA-----VKP-EV 169 (252)
T ss_pred CCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcCcCCHHHHHHHHHHHHHh-----cCC-CE
Confidence 455899999975432222 1221 2223333332221 112336678999999999999999 788 56
Q ss_pred EEEeccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 541 LFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 541 LlV~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
+++|||+.|+|...+ ..+.+.+.++.. ..+.|++|+
T Consensus 170 lllDEP~~gLD~~~~-~~l~~~l~~~~~-----~~tiiivsH 205 (252)
T PRK14256 170 ILMDEPASALDPIST-LKIEELIEELKE-----KYTIIIVTH 205 (252)
T ss_pred EEEcCCcccCCHHHH-HHHHHHHHHHHh-----CCcEEEEEC
Confidence 679999999998765 345556666642 346677776
No 201
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.57 E-value=4.7e-15 Score=167.08 Aligned_cols=172 Identities=12% Similarity=0.046 Sum_probs=120.5
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccCC-CcCCc
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHP-AAKHG 475 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~-~~~~t 475 (630)
.+|++++|.+.+| ++++|+|||||||||+++.|++.+.+..|+|.+.+.++.+.......+....++.+... ++.+|
T Consensus 25 ~il~~vsl~i~~G--e~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~t 102 (510)
T PRK15439 25 EVLKGIDFTLHAG--EVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLGIYLVPQEPLLFPNLS 102 (510)
T ss_pred eeeeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEeccCccCCCCc
Confidence 4889999999999 99999999999999999999999999999999988876543333221222334444322 55689
Q ss_pred chhhhHhhhccCCCCHHHHHHHHHHHhhhcC-CCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCccHHH
Q psy11993 476 GREMVQLFEKGYGKDPAEIAFRAISHARDMH-IDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVD 554 (630)
Q Consensus 476 v~env~l~~~~~~~d~~~ia~~ai~~a~~~~-~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~Dav~ 554 (630)
+.+|+.+..... ....+.+.++++.+.... .+..+-..|||++++..++++|. .+| .+|++|||+.|+|...
T Consensus 103 v~e~l~~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~aL~-----~~p-~lllLDEPt~~LD~~~ 175 (510)
T PRK15439 103 VKENILFGLPKR-QASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRGLM-----RDS-RILILDEPTASLTPAE 175 (510)
T ss_pred HHHHhhcccccc-hHHHHHHHHHHHHcCCCccccCChhhCCHHHHHHHHHHHHHH-----cCC-CEEEEECCCCCCCHHH
Confidence 999987643211 111222334444443322 24446678999999999999999 888 5667999999999876
Q ss_pred HHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 555 QLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 555 ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
+. .+.+.+.++.. .+.+.|++|+
T Consensus 176 ~~-~l~~~l~~~~~----~g~tiiivtH 198 (510)
T PRK15439 176 TE-RLFSRIRELLA----QGVGIVFISH 198 (510)
T ss_pred HH-HHHHHHHHHHH----CCCEEEEEeC
Confidence 53 34455655542 2466777776
No 202
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=99.57 E-value=1.1e-14 Score=147.08 Aligned_cols=172 Identities=19% Similarity=0.090 Sum_probs=119.3
Q ss_pred HHHHHHHcCCCcchhhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHH
Q psy11993 383 TDALVQILSPKRRVDILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHV 462 (630)
Q Consensus 383 ~~~L~~il~~~~~~~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~ 462 (630)
.+.++.-++. ..+|++++|++.+| ++++|+||||+||||+++.|++.+.+..|+|.+.+.+.+.. ..
T Consensus 25 ~~~~~~~~~~---~~il~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~------~~-- 91 (224)
T cd03220 25 ILGRKGEVGE---FWALKDVSFEVPRG--ERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSLL------GL-- 91 (224)
T ss_pred hhhhhhhcCC---eEEEeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEchhh------cc--
Confidence 4445544443 35899999999999 99999999999999999999999999999999988765311 00
Q ss_pred hhhcccCCCcCCcchhhhHhhhccCCCCHHHH---HHHHHHHhhhcC-CCeeeeccccchhchHHHHHHHHhhhhhcCCC
Q psy11993 463 RHLCSLHPAAKHGGREMVQLFEKGYGKDPAEI---AFRAISHARDMH-IDVVLIDTAGRMQDNEPLMRALAKLVKVNQPD 538 (630)
Q Consensus 463 ~~l~~~~~~~~~tv~env~l~~~~~~~d~~~i---a~~ai~~a~~~~-~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd 538 (630)
. ....+.+|+.+|+.+....++.+.... ..++++...... .+..+-..||+++++..++++|. .+|
T Consensus 92 ---~-~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~-----~~p- 161 (224)
T cd03220 92 ---G-GGFNPELTGRENIYLNGRLLGLSRKEIDEKIDEIIEFSELGDFIDLPVKTYSSGMKARLAFAIATA-----LEP- 161 (224)
T ss_pred ---c-ccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHh-----cCC-
Confidence 0 112345789999877543333333222 223333322211 24456788999999999999999 788
Q ss_pred eEEEEeccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 539 LLLFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 539 ~VLlV~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
.++++|||+.|+|...+. .+.+.+.++.. .+.+.|++|+
T Consensus 162 ~llllDEP~~gLD~~~~~-~~~~~l~~~~~----~~~tiii~sH 200 (224)
T cd03220 162 DILLIDEVLAVGDAAFQE-KCQRRLRELLK----QGKTVILVSH 200 (224)
T ss_pred CEEEEeCCcccCCHHHHH-HHHHHHHHHHh----CCCEEEEEeC
Confidence 566699999999987653 44455655542 1456777776
No 203
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.56 E-value=5.1e-15 Score=143.40 Aligned_cols=139 Identities=19% Similarity=0.215 Sum_probs=102.4
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccCC-CcCCc
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHP-AAKHG 475 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~-~~~~t 475 (630)
.+|++++|.+.+| ++++|+||||+||||+++.|++++.+..|+|.+.+.+..... ..++....++.+... ++.++
T Consensus 14 ~~l~~~~~~i~~G--e~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~--~~~~~~i~~~~q~~~~~~~~t 89 (173)
T cd03230 14 TALDDISLTVEKG--EIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEP--EEVKRRIGYLPEEPSLYENLT 89 (173)
T ss_pred eeeeeeEEEEcCC--cEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccch--HhhhccEEEEecCCccccCCc
Confidence 4789999999999 999999999999999999999999999999999887764322 223333333333221 22234
Q ss_pred chhhhHhhhccCCCCHHHHHHHHHHHhhhcCCCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCccHHHH
Q psy11993 476 GREMVQLFEKGYGKDPAEIAFRAISHARDMHIDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQ 555 (630)
Q Consensus 476 v~env~l~~~~~~~d~~~ia~~ai~~a~~~~~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~Dav~q 555 (630)
+.+|+. .||+++++..++++|+ .+| .++++|||+.++|...+
T Consensus 90 v~~~~~--------------------------------LS~G~~qrv~laral~-----~~p-~illlDEPt~~LD~~~~ 131 (173)
T cd03230 90 VRENLK--------------------------------LSGGMKQRLALAQALL-----HDP-ELLILDEPTSGLDPESR 131 (173)
T ss_pred HHHHhh--------------------------------cCHHHHHHHHHHHHHH-----cCC-CEEEEeCCccCCCHHHH
Confidence 443331 8999999999999999 788 56679999999998765
Q ss_pred HHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 556 LVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 556 l~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
. .+.+.+.++.. .+.+.+++|+
T Consensus 132 ~-~l~~~l~~~~~----~g~tiii~th 153 (173)
T cd03230 132 R-EFWELLRELKK----EGKTILLSSH 153 (173)
T ss_pred H-HHHHHHHHHHH----CCCEEEEECC
Confidence 3 45556665543 1456778776
No 204
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=99.56 E-value=5.1e-15 Score=152.70 Aligned_cols=165 Identities=19% Similarity=0.173 Sum_probs=115.2
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccCC-CcCCc
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHP-AAKHG 475 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~-~~~~t 475 (630)
.+|++++|.+.+| ++++|+||||+||||+++.|++++.+..|+|.+.+.+. ..++....++.+... ++.+|
T Consensus 26 ~il~~isl~i~~G--e~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~------~~~~~~i~~v~q~~~l~~~~t 97 (257)
T PRK11247 26 TVLNQLDLHIPAG--QFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPL------AEAREDTRLMFQDARLLPWKK 97 (257)
T ss_pred ceeeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEH------HHhhCceEEEecCccCCCCCc
Confidence 4789999999999 99999999999999999999999999999998866543 122333344444333 44579
Q ss_pred chhhhHhhhccCCCCHHHHHHHHHHHhhhcC-CCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCccHHH
Q psy11993 476 GREMVQLFEKGYGKDPAEIAFRAISHARDMH-IDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVD 554 (630)
Q Consensus 476 v~env~l~~~~~~~d~~~ia~~ai~~a~~~~-~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~Dav~ 554 (630)
+.+|+.+... . .....+.++++.+.... .+..+...|||++++..++++|. .+| .++++|||+.|+|...
T Consensus 98 v~enl~~~~~--~-~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqrl~laraL~-----~~p-~lllLDEPt~~LD~~~ 168 (257)
T PRK11247 98 VIDNVGLGLK--G-QWRDAALQALAAVGLADRANEWPAALSGGQKQRVALARALI-----HRP-GLLLLDEPLGALDALT 168 (257)
T ss_pred HHHHHHhccc--c-hHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHh-----cCC-CEEEEeCCCCCCCHHH
Confidence 9999876321 1 11222334444433322 23446778999999999999999 788 5666999999999876
Q ss_pred HHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 555 QLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 555 ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
+. .+.+.+.++... .+.+.|++|+
T Consensus 169 ~~-~l~~~L~~~~~~---~~~tviivsH 192 (257)
T PRK11247 169 RI-EMQDLIESLWQQ---HGFTVLLVTH 192 (257)
T ss_pred HH-HHHHHHHHHHHH---cCCEEEEEeC
Confidence 53 444455544221 2466788887
No 205
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.56 E-value=6.6e-15 Score=165.78 Aligned_cols=172 Identities=11% Similarity=0.084 Sum_probs=122.0
Q ss_pred hhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccC----CCcC
Q psy11993 398 ILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLH----PAAK 473 (630)
Q Consensus 398 iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~----~~~~ 473 (630)
+|++++|.+.+| ++++|+|||||||||+++.|++++.+..|+|.+.+.++.+......++....++.+.. .++.
T Consensus 278 ~l~~isl~i~~G--e~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~ 355 (510)
T PRK09700 278 KVRDISFSVCRG--EILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKGMAYITESRRDNGFFPN 355 (510)
T ss_pred cccceeEEEcCC--cEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCCHHHHHHCCcEEccCccccCCCcCC
Confidence 789999999999 9999999999999999999999999999999998877643222223333445555531 2456
Q ss_pred CcchhhhHhhhcc----C----C-CCH---HHHHHHHHHHhhhc-C-CCeeeeccccchhchHHHHHHHHhhhhhcCCCe
Q psy11993 474 HGGREMVQLFEKG----Y----G-KDP---AEIAFRAISHARDM-H-IDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDL 539 (630)
Q Consensus 474 ~tv~env~l~~~~----~----~-~d~---~~ia~~ai~~a~~~-~-~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~ 539 (630)
+|+.+|+.+.... + + ... ...+.++++.+... + .+..+-+.|||++++..++++|. .+| .
T Consensus 356 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~lAral~-----~~p-~ 429 (510)
T PRK09700 356 FSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNITELSGGNQQKVLISKWLC-----CCP-E 429 (510)
T ss_pred CcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCccccCChHHHHHHHHHHHHh-----cCC-C
Confidence 8999998763211 1 1 011 12234455544442 2 35557788999999999999999 788 5
Q ss_pred EEEEeccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 540 LLFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 540 VLlV~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
+|++|||+.|+|...+. .+.+.+.++.. .+.+.|++|+
T Consensus 430 lLlLDEPt~~LD~~~~~-~l~~~l~~l~~----~g~tvi~vsH 467 (510)
T PRK09700 430 VIIFDEPTRGIDVGAKA-EIYKVMRQLAD----DGKVILMVSS 467 (510)
T ss_pred EEEECCCCCCcCHHHHH-HHHHHHHHHHH----CCCEEEEEcC
Confidence 77799999999987653 44455655542 2567888887
No 206
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.56 E-value=6.5e-15 Score=148.97 Aligned_cols=189 Identities=19% Similarity=0.161 Sum_probs=125.6
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccCCCcCCcc
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHPAAKHGG 476 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~~~~~tv 476 (630)
.+|++++|.+.+| ++++|+||||+||||+++.|++.+.+..|+|.+.+.++.+... ..++....++.+.......|+
T Consensus 16 ~~l~~i~~~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~-~~~~~~i~~~~q~~~~~~~tv 92 (234)
T cd03251 16 PVLRDISLDIPAG--ETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTL-ASLRRQIGLVSQDVFLFNDTV 92 (234)
T ss_pred cceeeeeEEEcCC--CEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCH-HHHHhhEEEeCCCCeeccccH
Confidence 4789999999999 9999999999999999999999999999999998876643222 233444555555433445799
Q ss_pred hhhhHhhhccCCCCHHHHHH--H---HHHHhhhc--CC----CeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEec
Q psy11993 477 REMVQLFEKGYGKDPAEIAF--R---AISHARDM--HI----DVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGE 545 (630)
Q Consensus 477 ~env~l~~~~~~~d~~~ia~--~---ai~~a~~~--~~----D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E 545 (630)
.+|+.+....+ ....... + +.+.+... ++ +..+.+.||+++++..++++|. .+|+ ++++||
T Consensus 93 ~enl~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~-----~~p~-lllLDE 164 (234)
T cd03251 93 AENIAYGRPGA--TREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALL-----KDPP-ILILDE 164 (234)
T ss_pred HHHhhccCCCC--CHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHh-----cCCC-EEEEeC
Confidence 99997753322 1111110 0 11111111 12 2235578999999999999999 7884 666899
Q ss_pred cccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcccCCcCccHHHHHHHHHHhCCcEEEEecCCCC
Q psy11993 546 ALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGTGQTY 613 (630)
Q Consensus 546 ~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK~D~~~~~~G~~ls~~~~~g~PI~fvg~Gq~v 613 (630)
|+.|+|...+ ..+.+.+.++.. +.+.|++|+- .-.+ . . --.|..+..|+-+
T Consensus 165 P~~~LD~~~~-~~l~~~l~~~~~-----~~tii~~sh~------~~~~-~---~-~d~v~~l~~G~i~ 215 (234)
T cd03251 165 ATSALDTESE-RLVQAALERLMK-----NRTTFVIAHR------LSTI-E---N-ADRIVVLEDGKIV 215 (234)
T ss_pred ccccCCHHHH-HHHHHHHHHhcC-----CCEEEEEecC------HHHH-h---h-CCEEEEecCCeEe
Confidence 9999998875 445566665532 4566777751 1111 1 1 2357777777654
No 207
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.56 E-value=1.2e-14 Score=144.95 Aligned_cols=167 Identities=18% Similarity=0.087 Sum_probs=115.3
Q ss_pred hhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccCC-CcCCcchhh
Q psy11993 401 DALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHP-AAKHGGREM 479 (630)
Q Consensus 401 ~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~-~~~~tv~en 479 (630)
+++|.+.+| ++++|+||||+||||+++.|++.+.+..|+|.+.+.++.+.... +....++.+... ++.+|+.+|
T Consensus 16 ~is~~i~~G--e~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~---~~~i~~~~q~~~~~~~~tv~en 90 (211)
T cd03298 16 HFDLTFAQG--EITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPA---DRPVSMLFQENNLFAHLTVEQN 90 (211)
T ss_pred ceEEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCHh---HccEEEEecccccCCCCcHHHH
Confidence 789999999 99999999999999999999999999999999988876543221 223344444333 456799999
Q ss_pred hHhhhccC-CCC--HHHHHHHHHHHhhhcC-CCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCccHHHH
Q psy11993 480 VQLFEKGY-GKD--PAEIAFRAISHARDMH-IDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQ 555 (630)
Q Consensus 480 v~l~~~~~-~~d--~~~ia~~ai~~a~~~~-~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~Dav~q 555 (630)
+.+..... ... ....+.++++.+.... .+..+...||+++++..++++|. .+| .++++|||+.|+|...+
T Consensus 91 l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ia~al~-----~~p-~llllDEP~~~LD~~~~ 164 (211)
T cd03298 91 VGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALARVLV-----RDK-PVLLLDEPFAALDPALR 164 (211)
T ss_pred HhcccccccCccHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHh-----cCC-CEEEEcCCcccCCHHHH
Confidence 87643211 111 1222333443333221 23445678999999999999999 788 56669999999998765
Q ss_pred HHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 556 LVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 556 l~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
. .+.+.+.++.. ..+.+.+++|+
T Consensus 165 ~-~l~~~l~~~~~---~~~~tii~~sH 187 (211)
T cd03298 165 A-EMLDLVLDLHA---ETKMTVLMVTH 187 (211)
T ss_pred H-HHHHHHHHHHH---hcCCEEEEEec
Confidence 3 44555555432 12567788887
No 208
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=99.56 E-value=1.2e-14 Score=150.60 Aligned_cols=173 Identities=16% Similarity=0.123 Sum_probs=117.5
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccC---CCcC
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLH---PAAK 473 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~---~~~~ 473 (630)
.+|++++|.+.+| ++++|+||||+||||+++.|++.+.+..|+|.+.+.++.+.. ....+....++.+.. ..+.
T Consensus 27 ~~l~~vsl~i~~G--e~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~-~~~~~~~i~~v~q~~~~~~~~~ 103 (267)
T PRK15112 27 EAVKPLSFTLREG--QTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGD-YSYRSQRIRMIFQDPSTSLNPR 103 (267)
T ss_pred ceeeeeeEEecCC--CEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCc-hhhHhccEEEEecCchhhcCcc
Confidence 4899999999999 999999999999999999999999999999999988774322 222233344444432 1334
Q ss_pred CcchhhhHhhhccC-CCCHHH---HHHHHHHHhhhc-C-CCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccc
Q psy11993 474 HGGREMVQLFEKGY-GKDPAE---IAFRAISHARDM-H-IDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEAL 547 (630)
Q Consensus 474 ~tv~env~l~~~~~-~~d~~~---ia~~ai~~a~~~-~-~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~ 547 (630)
+++.+++.+..... ...... .+.++++.+... . .+..+-..||+++++..++++|. .+| .+|++|||+
T Consensus 104 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~-----~~p-~lllLDEPt 177 (267)
T PRK15112 104 QRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYPHMLAPGQKQRLGLARALI-----LRP-KVIIADEAL 177 (267)
T ss_pred hhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhcCchhcCHHHHHHHHHHHHHH-----hCC-CEEEEcCCc
Confidence 57777776532211 122222 233344333321 1 13335678999999999999999 788 567799999
Q ss_pred cCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 548 VGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 548 ~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
.++|...+ ..+.+.+.++... .+.+.|++|+
T Consensus 178 ~~LD~~~~-~~l~~~l~~~~~~---~g~tviivsH 208 (267)
T PRK15112 178 ASLDMSMR-SQLINLMLELQEK---QGISYIYVTQ 208 (267)
T ss_pred ccCCHHHH-HHHHHHHHHHHHH---cCcEEEEEeC
Confidence 99998764 4555566655321 2466788886
No 209
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=99.56 E-value=1.2e-14 Score=146.03 Aligned_cols=174 Identities=17% Similarity=0.134 Sum_probs=120.3
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHH--HHHHHHHhhhcccCC-CcC
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAV--EQLRTHVRHLCSLHP-AAK 473 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~--eQLr~~~~~l~~~~~-~~~ 473 (630)
.+|++++|.+.+| ++++|+|+||+||||++..|++.+.+..|+|.+.+.+....... +..+....++.+... ++.
T Consensus 19 ~il~~vs~~i~~G--~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 96 (220)
T TIGR02982 19 QVLFDINLEINPG--EIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLRRNIGYIFQAHNLLGF 96 (220)
T ss_pred eEEeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHHHhheEEEcCChhhcCC
Confidence 4789999999999 99999999999999999999999999999999988776433221 122344444444333 445
Q ss_pred CcchhhhHhhhccCC-CCHHHH---HHHHHHHhhhcC-CCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEecccc
Q psy11993 474 HGGREMVQLFEKGYG-KDPAEI---AFRAISHARDMH-IDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALV 548 (630)
Q Consensus 474 ~tv~env~l~~~~~~-~d~~~i---a~~ai~~a~~~~-~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~ 548 (630)
+|+.+|+.+....+. ...... +.++++.+.... .+..+...||+++++..++++|. .+| .++++|||+.
T Consensus 97 ~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrv~laral~-----~~p-~illlDEP~~ 170 (220)
T TIGR02982 97 LTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYPHNLSGGQKQRVAIARALV-----HRP-KLVLADEPTA 170 (220)
T ss_pred CCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHh-----cCC-CEEEEeCCCC
Confidence 899999987543221 222222 333333333221 24456678999999999999999 788 5666999999
Q ss_pred CccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 549 GNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 549 g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
|+|...+. .+...+.++.. ..+.+.+++|+
T Consensus 171 ~LD~~~~~-~l~~~l~~~~~---~~~~tii~~sh 200 (220)
T TIGR02982 171 ALDSKSGR-DVVELMQKLAR---EQGCTILIVTH 200 (220)
T ss_pred cCCHHHHH-HHHHHHHHHHH---HcCCEEEEEeC
Confidence 99987654 34444554432 12467788887
No 210
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.56 E-value=1.2e-14 Score=148.79 Aligned_cols=172 Identities=15% Similarity=0.134 Sum_probs=117.9
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHh-----cCCeEEEeecccCCcc-HHHHHHHHHhhhcccCC
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIE-----NNLNVLIAACDTFRAG-AVEQLRTHVRHLCSLHP 470 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~-----~ggkVlI~~~Dt~R~g-a~eQLr~~~~~l~~~~~ 470 (630)
.+|++++|.+.+| ++++|+||||+||||+++.|++++.+ ..|+|.+.+.++.+.. ....++....++.+...
T Consensus 17 ~~l~~i~~~i~~G--e~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~~~~~~i~~~~q~~~ 94 (250)
T PRK14262 17 KAVKNVTMKIFKN--QITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVTEYRKKVGMVFQKPT 94 (250)
T ss_pred eeEeeeeEeecCC--CEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHHHhhhhEEEEecCCc
Confidence 4789999999999 99999999999999999999999874 7899999988764321 11233444555555444
Q ss_pred CcCCcchhhhHhhhccCCCC-HHH---HHHHHHHHhhhc-----CCCeeeeccccchhchHHHHHHHHhhhhhcCCCeEE
Q psy11993 471 AAKHGGREMVQLFEKGYGKD-PAE---IAFRAISHARDM-----HIDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLL 541 (630)
Q Consensus 471 ~~~~tv~env~l~~~~~~~d-~~~---ia~~ai~~a~~~-----~~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VL 541 (630)
....|+.+|+.+....++.. ... .+..+++.+... ..+..+...||+++++..++++|. .+| .++
T Consensus 95 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~la~al~-----~~p-~ll 168 (250)
T PRK14262 95 PFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSGGQQQRLCIARALA-----VEP-EVI 168 (250)
T ss_pred cCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHHHHhCChhhcCHHHHHHHHHHHHHh-----CCC-CEE
Confidence 33489999997643222221 111 122233322211 023446778999999999999999 788 566
Q ss_pred EEeccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 542 FVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 542 lV~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
++|||+.|+|...+. .+.+.+.++.. ..+.+++|+
T Consensus 169 llDEP~~~LD~~~~~-~l~~~l~~~~~-----~~tili~sH 203 (250)
T PRK14262 169 LLDEPTSALDPIATQ-RIEKLLEELSE-----NYTIVIVTH 203 (250)
T ss_pred EEeCCccccCHHHHH-HHHHHHHHHhc-----CcEEEEEeC
Confidence 799999999987653 45556665542 356677776
No 211
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.56 E-value=1e-14 Score=164.34 Aligned_cols=173 Identities=12% Similarity=-0.013 Sum_probs=120.2
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccCC-CcCCc
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHP-AAKHG 475 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~-~~~~t 475 (630)
.+|++++|.+.+| ++++|+|||||||||+++.|++.+.+..|+|.+.+.++.........+....++.+... ++.+|
T Consensus 19 ~il~~vs~~i~~G--e~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~t 96 (510)
T PRK09700 19 HALKSVNLTVYPG--EIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLGIGIIYQELSVIDELT 96 (510)
T ss_pred EEeeeeeEEEcCC--cEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCCeEEEeecccccCCCc
Confidence 4789999999999 99999999999999999999999999999999998887443322222223444444322 45689
Q ss_pred chhhhHhhhcc----CCC---CHHH---HHHHHHHHhhhcC-CCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEe
Q psy11993 476 GREMVQLFEKG----YGK---DPAE---IAFRAISHARDMH-IDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVG 544 (630)
Q Consensus 476 v~env~l~~~~----~~~---d~~~---ia~~ai~~a~~~~-~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~ 544 (630)
+.+|+.+.... ++. +..+ .+.++++.+.... .+..+-..|||++++..++++|. .+| .+|++|
T Consensus 97 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~ia~al~-----~~p-~lllLD 170 (510)
T PRK09700 97 VLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVANLSISHKQMLEIAKTLM-----LDA-KVIIMD 170 (510)
T ss_pred HHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHh-----cCC-CEEEEe
Confidence 99998753211 111 1222 2233343333322 24456778999999999999999 788 567799
Q ss_pred ccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 545 EALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 545 E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
||++++|...+. .+.+.+.++.. .+.+.|++|+
T Consensus 171 EPt~~LD~~~~~-~l~~~l~~l~~----~g~tiiivsH 203 (510)
T PRK09700 171 EPTSSLTNKEVD-YLFLIMNQLRK----EGTAIVYISH 203 (510)
T ss_pred CCCCCCCHHHHH-HHHHHHHHHHh----CCCEEEEEeC
Confidence 999999987764 34445555532 2467788887
No 212
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=99.56 E-value=1.8e-14 Score=149.12 Aligned_cols=172 Identities=17% Similarity=0.167 Sum_probs=117.3
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHH-----hcCCeEEEeecccCCc-cHHHHHHHHHhhhcccCC
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLI-----ENNLNVLIAACDTFRA-GAVEQLRTHVRHLCSLHP 470 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~-----~~ggkVlI~~~Dt~R~-ga~eQLr~~~~~l~~~~~ 470 (630)
.+|++++|.+.+| ++++|+||||+||||+++.|++.+. +..|+|.+.+.+..+. .....++....++.+...
T Consensus 34 ~il~~vsl~i~~G--e~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~ 111 (267)
T PRK14237 34 EAIKGIDMQFEKN--KITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINVYEMRKHIGMVFQRPN 111 (267)
T ss_pred eeEeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCChHHHhcceEEEecCCc
Confidence 4789999999999 9999999999999999999999986 4689999988776321 112223444455555433
Q ss_pred CcCCcchhhhHhhhccCCC-CHHHH---HHHHHHHhhhc-----CCCeeeeccccchhchHHHHHHHHhhhhhcCCCeEE
Q psy11993 471 AAKHGGREMVQLFEKGYGK-DPAEI---AFRAISHARDM-----HIDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLL 541 (630)
Q Consensus 471 ~~~~tv~env~l~~~~~~~-d~~~i---a~~ai~~a~~~-----~~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VL 541 (630)
....|+.+|+.+.....+. +.... +.++++.+... ..+..+...||+++++..++++|. .+| .++
T Consensus 112 ~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrl~laral~-----~~p-~ll 185 (267)
T PRK14237 112 PFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKDDLHKSALTLSGGQQQRLCIARAIA-----VKP-DIL 185 (267)
T ss_pred cccccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhhhhcCCcccCCHHHHHHHHHHHHHh-----cCC-CEE
Confidence 3346999999774322221 22111 22233332221 123446678999999999999999 788 566
Q ss_pred EEeccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 542 FVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 542 lV~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
++|||+.|+|...+ ..+.+.+.++.. +.+.|++|+
T Consensus 186 lLDEPt~~LD~~~~-~~l~~~l~~~~~-----~~tiii~tH 220 (267)
T PRK14237 186 LMDEPASALDPIST-MQLEETMFELKK-----NYTIIIVTH 220 (267)
T ss_pred EEeCCcccCCHHHH-HHHHHHHHHHhc-----CCEEEEEec
Confidence 69999999998664 455566666532 356677776
No 213
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=99.56 E-value=8.8e-15 Score=169.19 Aligned_cols=171 Identities=20% Similarity=0.141 Sum_probs=134.3
Q ss_pred hhhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccCCCcCCc
Q psy11993 396 VDILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHPAAKHG 475 (630)
Q Consensus 396 ~~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~~~~~t 475 (630)
..+|+++++++++| +.++|||+|||||||+++.|.+++.|..|+|.+.+.|.-... ..+||+...++.+....+..|
T Consensus 486 ~~vL~~isL~I~~G--e~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~-~~~lR~~ig~V~Q~~~Lf~gS 562 (709)
T COG2274 486 PPVLEDLSLEIPPG--EKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDID-LASLRRQVGYVLQDPFLFSGS 562 (709)
T ss_pred cchhhceeEEeCCC--CEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcC-HHHHHhheeEEcccchhhcCc
Confidence 47999999999999 999999999999999999999999999999999999986655 458899999998888888999
Q ss_pred chhhhHhhhccCCCCHHHHHHHHHHHhh--------hcCCCeeeec----cccchhchHHHHHHHHhhhhhcCCCeEEEE
Q psy11993 476 GREMVQLFEKGYGKDPAEIAFRAISHAR--------DMHIDVVLID----TAGRMQDNEPLMRALAKLVKVNQPDLLLFV 543 (630)
Q Consensus 476 v~env~l~~~~~~~d~~~ia~~ai~~a~--------~~~~D~vlID----TaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV 543 (630)
+++|+.+...... . +.+.+|...+. -.+|+..+.+ .|||++|+..++|+|. .+| .||++
T Consensus 563 I~eNi~l~~p~~~--~-e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaLl-----~~P-~ILlL 633 (709)
T COG2274 563 IRENIALGNPEAT--D-EEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALL-----SKP-KILLL 633 (709)
T ss_pred HHHHHhcCCCCCC--H-HHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHhc-----cCC-CEEEE
Confidence 9999988654322 1 22223322221 1356777655 5999999999999999 788 67889
Q ss_pred eccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcccC
Q psy11993 544 GEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFD 584 (630)
Q Consensus 544 ~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK~D 584 (630)
||||+++|...+.... +.+..+. .+.+.|++|+=+
T Consensus 634 DEaTSaLD~~sE~~I~-~~L~~~~-----~~~T~I~IaHRl 668 (709)
T COG2274 634 DEATSALDPETEAIIL-QNLLQIL-----QGRTVIIIAHRL 668 (709)
T ss_pred eCcccccCHhHHHHHH-HHHHHHh-----cCCeEEEEEccc
Confidence 9999999988775544 3444433 257788888744
No 214
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=99.56 E-value=6.3e-15 Score=143.34 Aligned_cols=140 Identities=18% Similarity=0.123 Sum_probs=101.4
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccCCCcCCcc
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHPAAKHGG 476 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~~~~~tv 476 (630)
.+|++++|.+.+| ++++|+||||+||||+++.|++.+.+..|+|.+.+.+..+. ...++....++.+...+...|+
T Consensus 16 ~~l~~i~~~i~~G--e~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~--~~~~~~~i~~~~q~~~~~~~tv 91 (178)
T cd03247 16 QVLKNLSLELKQG--EKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDL--EKALSSLISVLNQRPYLFDTTL 91 (178)
T ss_pred cceEEEEEEEcCC--CEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHH--HHHHHhhEEEEccCCeeecccH
Confidence 4789999999999 99999999999999999999999999999999988765322 1123333333333211111222
Q ss_pred hhhhHhhhccCCCCHHHHHHHHHHHhhhcCCCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCccHHHHH
Q psy11993 477 REMVQLFEKGYGKDPAEIAFRAISHARDMHIDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQL 556 (630)
Q Consensus 477 ~env~l~~~~~~~d~~~ia~~ai~~a~~~~~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~Dav~ql 556 (630)
.+|+ +...||+++++..++++|. .+| .++++|||+.++|...+
T Consensus 92 ~~~i------------------------------~~~LS~G~~qrv~laral~-----~~p-~~lllDEP~~~LD~~~~- 134 (178)
T cd03247 92 RNNL------------------------------GRRFSGGERQRLALARILL-----QDA-PIVLLDEPTVGLDPITE- 134 (178)
T ss_pred HHhh------------------------------cccCCHHHHHHHHHHHHHh-----cCC-CEEEEECCcccCCHHHH-
Confidence 2222 5678999999999999999 888 56679999999998764
Q ss_pred HHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 557 VKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 557 ~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
..+.+.+.++.. +.+.+++|+
T Consensus 135 ~~l~~~l~~~~~-----~~tii~~sh 155 (178)
T cd03247 135 RQLLSLIFEVLK-----DKTLIWITH 155 (178)
T ss_pred HHHHHHHHHHcC-----CCEEEEEec
Confidence 455566665531 456677776
No 215
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.56 E-value=2.3e-14 Score=146.76 Aligned_cols=172 Identities=19% Similarity=0.165 Sum_probs=117.5
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHH---Hh--cCCeEEEeecccCCcc-HHHHHHHHHhhhcccCC
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWL---IE--NNLNVLIAACDTFRAG-AVEQLRTHVRHLCSLHP 470 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l---~~--~ggkVlI~~~Dt~R~g-a~eQLr~~~~~l~~~~~ 470 (630)
.+|++++|.+.+| ++++|+||||+||||+++.|+++. .+ ..|+|.+.+.++.+.. ....++....++.+...
T Consensus 17 ~~l~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~ 94 (250)
T PRK14245 17 HALKGISMEIEEK--SVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVDELRKNVGMVFQRPN 94 (250)
T ss_pred eEEeeeeEEEeCC--CEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccHHHHhhheEEEecCCc
Confidence 4789999999999 999999999999999999999873 33 4799999988775421 12344555566655444
Q ss_pred CcCCcchhhhHhhhccCCC-CHH---HHHHHHHHHhhhcC-----CCeeeeccccchhchHHHHHHHHhhhhhcCCCeEE
Q psy11993 471 AAKHGGREMVQLFEKGYGK-DPA---EIAFRAISHARDMH-----IDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLL 541 (630)
Q Consensus 471 ~~~~tv~env~l~~~~~~~-d~~---~ia~~ai~~a~~~~-----~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VL 541 (630)
....|+.+|+.+.....+. ... ..+.++++.+.... .+..+.+.||+++++..++++|. .+| .++
T Consensus 95 ~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~-----~~p-~ll 168 (250)
T PRK14245 95 PFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKLKESAFALSGGQQQRLCIARAMA-----VSP-SVL 168 (250)
T ss_pred cCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhhhCCcccCCHHHHHHHHHHHHHh-----cCC-CEE
Confidence 3346999999764322221 111 12233443332211 23345678999999999999999 788 566
Q ss_pred EEeccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 542 FVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 542 lV~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
++|||+.|+|...+. .+.+.+.++.. +.+.|++|+
T Consensus 169 lLDEPt~~LD~~~~~-~l~~~l~~~~~-----~~tiiivtH 203 (250)
T PRK14245 169 LMDEPASALDPISTA-KVEELIHELKK-----DYTIVIVTH 203 (250)
T ss_pred EEeCCCccCCHHHHH-HHHHHHHHHhc-----CCeEEEEeC
Confidence 699999999987654 45566665532 356677776
No 216
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=99.56 E-value=1.1e-14 Score=150.17 Aligned_cols=174 Identities=17% Similarity=0.176 Sum_probs=119.5
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhc---CCeEEEeecccCCcc----HHHHHHHHHhhhcccC
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIEN---NLNVLIAACDTFRAG----AVEQLRTHVRHLCSLH 469 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~---ggkVlI~~~Dt~R~g----a~eQLr~~~~~l~~~~ 469 (630)
.+|++++|.+.+| ++++|+||||+||||+++.|++.+.+. +|+|.+.+.++.+.+ ....++....++.+..
T Consensus 18 ~il~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~i~~~~q~~ 95 (262)
T PRK09984 18 QALHAVDLNIHHG--EMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIRKSRANTGYIFQQF 95 (262)
T ss_pred EEEecceEEEcCC--cEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhHHHHHhheEEEcccc
Confidence 4789999999999 999999999999999999999999875 489999998764321 1223333444555433
Q ss_pred C-CcCCcchhhhHhhhccC--------CC-C--HHHHHHHHHHHhhhcC-CCeeeeccccchhchHHHHHHHHhhhhhcC
Q psy11993 470 P-AAKHGGREMVQLFEKGY--------GK-D--PAEIAFRAISHARDMH-IDVVLIDTAGRMQDNEPLMRALAKLVKVNQ 536 (630)
Q Consensus 470 ~-~~~~tv~env~l~~~~~--------~~-d--~~~ia~~ai~~a~~~~-~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~ 536 (630)
. ++.+|+.+|+.+..... .. . ....+.++++.+.... .+..+.+.||+++++..++++|. .+
T Consensus 96 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~-----~~ 170 (262)
T PRK09984 96 NLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRVSTLSGGQQQRVAIARALM-----QQ 170 (262)
T ss_pred ccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCccccCHHHHHHHHHHHHHh-----cC
Confidence 2 45689999997542110 10 1 1122333444333221 24456778999999999999999 78
Q ss_pred CCeEEEEeccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 537 PDLLLFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 537 Pd~VLlV~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
| .+|++|||+.|+|...+ ..+.+.+.++... .+.+.|++|+
T Consensus 171 p-~llllDEPt~~LD~~~~-~~l~~~l~~~~~~---~g~tvii~tH 211 (262)
T PRK09984 171 A-KVILADEPIASLDPESA-RIVMDTLRDINQN---DGITVVVTLH 211 (262)
T ss_pred C-CEEEecCccccCCHHHH-HHHHHHHHHHHHh---cCCEEEEEeC
Confidence 8 46669999999998765 3455566655421 2467788886
No 217
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.55 E-value=2.2e-14 Score=161.49 Aligned_cols=173 Identities=13% Similarity=0.126 Sum_probs=121.2
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHH-hcCCeEEEeecccCCccHHHHHHHHHhhhcccC----CC
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLI-ENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLH----PA 471 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~-~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~----~~ 471 (630)
.+|++++|.+.+| ++++|+|||||||||+++.|++++. +..|+|.+.+.|.........++....++.+.. .+
T Consensus 276 ~vl~~vsl~i~~G--e~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 353 (506)
T PRK13549 276 KRVDDVSFSLRRG--EILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAIAQGIAMVPEDRKRDGIV 353 (506)
T ss_pred ccccceeeEEcCC--cEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHHHHHHCCCEEeCcchhhCCCc
Confidence 4899999999999 9999999999999999999999998 489999998877632222222333344455432 24
Q ss_pred cCCcchhhhHhhhc--cCC---CCHH---HHHHHHHHHhhhc--CCCeeeeccccchhchHHHHHHHHhhhhhcCCCeEE
Q psy11993 472 AKHGGREMVQLFEK--GYG---KDPA---EIAFRAISHARDM--HIDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLL 541 (630)
Q Consensus 472 ~~~tv~env~l~~~--~~~---~d~~---~ia~~ai~~a~~~--~~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VL 541 (630)
+.+|+.+|+.+... ... .+.. ..+.++++.+... ..+..+-+.|||++++..++++|. .+| .+|
T Consensus 354 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~lA~al~-----~~p-~ll 427 (506)
T PRK13549 354 PVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAIARLSGGNQQKAVLAKCLL-----LNP-KIL 427 (506)
T ss_pred CCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCcccccccCCHHHHHHHHHHHHHh-----hCC-CEE
Confidence 56899999875321 111 1221 2234444444432 234557788999999999999999 788 577
Q ss_pred EEeccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 542 FVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 542 lV~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
++|||+.|+|...+. .+.+.+.++.. .+.+.|++|+
T Consensus 428 lLDEPt~~LD~~~~~-~l~~~l~~l~~----~g~tvi~~sH 463 (506)
T PRK13549 428 ILDEPTRGIDVGAKY-EIYKLINQLVQ----QGVAIIVISS 463 (506)
T ss_pred EEcCCCCCcCHhHHH-HHHHHHHHHHH----CCCEEEEECC
Confidence 799999999987764 34445555542 2567888888
No 218
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.55 E-value=2.3e-14 Score=149.33 Aligned_cols=172 Identities=17% Similarity=0.110 Sum_probs=117.8
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHh-----cCCeEEEeecccCCccHHHHHHHHHhhhcccCCC
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIE-----NNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHPA 471 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~-----~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~~ 471 (630)
.+|++++|.+.+| ++++|+||||+||||+++.|++.+.+ ..|+|.+.+.++........++....++.+....
T Consensus 35 ~il~~vs~~i~~G--e~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~l 112 (276)
T PRK14271 35 TVLDQVSMGFPAR--AVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLEFRRRVGMLFQRPNP 112 (276)
T ss_pred EEeeeeEEEEcCC--cEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhHHHhhheEEeccCCcc
Confidence 4789999999999 99999999999999999999999875 5899999887764332223445555566554333
Q ss_pred cCCcchhhhHhhhccCC-CCHHHH---HHHHHHHhhhcC-----CCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEE
Q psy11993 472 AKHGGREMVQLFEKGYG-KDPAEI---AFRAISHARDMH-----IDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLF 542 (630)
Q Consensus 472 ~~~tv~env~l~~~~~~-~d~~~i---a~~ai~~a~~~~-----~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLl 542 (630)
...|+.+|+.+...... ....+. +..+++.+.... .+..+...||+++++..++++|. .+| .+++
T Consensus 113 ~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl~LAral~-----~~p-~lll 186 (276)
T PRK14271 113 FPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQQLLCLARTLA-----VNP-EVLL 186 (276)
T ss_pred CCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcccCCHHHHHHHHHHHHHh-----cCC-CEEE
Confidence 33799999976432111 122222 122233222211 12235578999999999999999 788 5677
Q ss_pred EeccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 543 VGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 543 V~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
+|||+.++|...+. .+.+.+..+.. ..+.|++|+
T Consensus 187 LDEPt~~LD~~~~~-~l~~~L~~~~~-----~~tiiivsH 220 (276)
T PRK14271 187 LDEPTSALDPTTTE-KIEEFIRSLAD-----RLTVIIVTH 220 (276)
T ss_pred EcCCcccCCHHHHH-HHHHHHHHHhc-----CCEEEEEeC
Confidence 99999999987653 44556655542 246677776
No 219
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=99.55 E-value=7.4e-15 Score=149.04 Aligned_cols=171 Identities=17% Similarity=0.142 Sum_probs=114.9
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccCCCcCCcc
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHPAAKHGG 476 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~~~~~tv 476 (630)
.+|++++|.+.+| ++++|+||||+||||++..|++.+.+..|+|.+.+.++...... .++....++.+...+...|+
T Consensus 17 ~~l~~i~~~i~~G--e~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~-~~~~~i~~~~q~~~~~~~tv 93 (238)
T cd03249 17 PILKGLSLTIPPG--KTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLR-WLRSQIGLVSQEPVLFDGTI 93 (238)
T ss_pred cceeceEEEecCC--CEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHH-HHHhhEEEECCchhhhhhhH
Confidence 4789999999999 99999999999999999999999999999999998776433322 23333444444333334689
Q ss_pred hhhhHhhhccCCCCHHHHHHH---HHHHhhhc--CC----CeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccc
Q psy11993 477 REMVQLFEKGYGKDPAEIAFR---AISHARDM--HI----DVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEAL 547 (630)
Q Consensus 477 ~env~l~~~~~~~d~~~ia~~---ai~~a~~~--~~----D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~ 547 (630)
.+|+.+..............+ +.+..... ++ +..+...||+++++..++++|. .+|+ ++++|||+
T Consensus 94 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~-----~~p~-llllDEP~ 167 (238)
T cd03249 94 AENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALL-----RNPK-ILLLDEAT 167 (238)
T ss_pred HHHhhccCCCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHh-----cCCC-EEEEeCcc
Confidence 999876432211111100000 11111110 11 2224577999999999999999 8884 66699999
Q ss_pred cCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 548 VGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 548 ~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
.|+|...+ ..+.+.+.++. .+.+.+++|+
T Consensus 168 ~gLD~~~~-~~l~~~l~~~~-----~g~~vi~~sh 196 (238)
T cd03249 168 SALDAESE-KLVQEALDRAM-----KGRTTIVIAH 196 (238)
T ss_pred ccCCHHHH-HHHHHHHHHhc-----CCCEEEEEeC
Confidence 99998775 45566666553 2456677776
No 220
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=99.55 E-value=1.8e-14 Score=147.59 Aligned_cols=169 Identities=16% Similarity=0.128 Sum_probs=118.6
Q ss_pred hhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccC-CCcCCcc
Q psy11993 398 ILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLH-PAAKHGG 476 (630)
Q Consensus 398 iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~-~~~~~tv 476 (630)
+|++++|.+.+| ++++|+||||+||||+++.|++.+. ..|.|.+.+.+..+.... .++....++.+.. .++.+|+
T Consensus 11 ~l~~vsl~i~~G--ei~~l~G~nGsGKSTLl~~l~Gl~~-~~G~i~~~g~~i~~~~~~-~~~~~i~~v~q~~~~~~~~tv 86 (248)
T PRK03695 11 RLGPLSAEVRAG--EILHLVGPNGAGKSTLLARMAGLLP-GSGSIQFAGQPLEAWSAA-ELARHRAYLSQQQTPPFAMPV 86 (248)
T ss_pred eecceEEEEcCC--CEEEEECCCCCCHHHHHHHHcCCCC-CCeEEEECCEecCcCCHH-HHhhheEEecccCccCCCccH
Confidence 678899999999 9999999999999999999999874 589999998887554332 3344445555543 2456899
Q ss_pred hhhhHhhhccCCCCH---HHHHHHHHHHhhhcC-CCeeeeccccchhchHHHHHHHHhhhhhc-------CCCeEEEEec
Q psy11993 477 REMVQLFEKGYGKDP---AEIAFRAISHARDMH-IDVVLIDTAGRMQDNEPLMRALAKLVKVN-------QPDLLLFVGE 545 (630)
Q Consensus 477 ~env~l~~~~~~~d~---~~ia~~ai~~a~~~~-~D~vlIDTaGr~~~~~~L~~aL~kl~~~~-------~Pd~VLlV~E 545 (630)
.+|+.++... ..+. ...+.++++.+.... .+..+...||+++++..++++|. . .| .++++||
T Consensus 87 ~~nl~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~-----~~~~~~~p~p-~llllDE 159 (248)
T PRK03695 87 FQYLTLHQPD-KTRTEAVASALNEVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVVL-----QVWPDINPAG-QLLLLDE 159 (248)
T ss_pred HHHHHhcCcc-CCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHh-----ccccccCCCC-CEEEEcC
Confidence 9999875321 1122 122334444433321 24456788999999999999998 4 34 5777999
Q ss_pred cccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 546 ALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 546 ~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
|+.|+|...+ ..+.+.+.++.. .+.+.|++|+
T Consensus 160 Pt~~LD~~~~-~~l~~~L~~~~~----~~~tvi~~sH 191 (248)
T PRK03695 160 PMNSLDVAQQ-AALDRLLSELCQ----QGIAVVMSSH 191 (248)
T ss_pred CcccCCHHHH-HHHHHHHHHHHh----CCCEEEEEec
Confidence 9999998865 455566666542 2567778776
No 221
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=99.55 E-value=1.2e-14 Score=147.69 Aligned_cols=171 Identities=16% Similarity=0.087 Sum_probs=119.4
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccCC-CcCCc
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHP-AAKHG 475 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~-~~~~t 475 (630)
.+|++++|.+.+| ++++|+||||+||||++..|++++.+..|+|.+.+.++.... ..+....++.+... ++..|
T Consensus 14 ~il~~is~~i~~G--e~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~---~~~~~i~~~~q~~~~~~~~t 88 (237)
T TIGR00968 14 QALDDVNLEVPTG--SLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVH---ARDRKIGFVFQHYALFKHLT 88 (237)
T ss_pred eeeeeEEEEEcCC--CEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCC---hhhcCEEEEecChhhccCCc
Confidence 4889999999999 999999999999999999999999999999999887764432 22333444544333 44579
Q ss_pred chhhhHhhhccCCCCHH---HHHHHHHHHhhhcC-CCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCcc
Q psy11993 476 GREMVQLFEKGYGKDPA---EIAFRAISHARDMH-IDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNE 551 (630)
Q Consensus 476 v~env~l~~~~~~~d~~---~ia~~ai~~a~~~~-~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~D 551 (630)
+.+|+.+....++.+.. +.+.++++.+.... .+..+...|++++++..++++|. .+| .++++|||+.|+|
T Consensus 89 ~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~-----~~p-~llllDEP~~~LD 162 (237)
T TIGR00968 89 VRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRYPNQLSGGQRQRVALARALA-----VEP-QVLLLDEPFGALD 162 (237)
T ss_pred HHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHh-----cCC-CEEEEcCCcccCC
Confidence 99999765433332222 12233343332211 23446678999999999999999 788 5666999999999
Q ss_pred HHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 552 AVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 552 av~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
...+ ..+.+.+.++.. ..+.+.+++|+
T Consensus 163 ~~~~-~~~~~~l~~~~~---~~~~tvli~sH 189 (237)
T TIGR00968 163 AKVR-KELRSWLRKLHD---EVHVTTVFVTH 189 (237)
T ss_pred HHHH-HHHHHHHHHHHH---hcCCEEEEEeC
Confidence 8765 445555554432 11466777776
No 222
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=99.55 E-value=6.9e-15 Score=158.49 Aligned_cols=170 Identities=15% Similarity=0.066 Sum_probs=116.3
Q ss_pred hhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccH---HHHHHHHHhhhcccCC-CcCCcc
Q psy11993 401 DALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGA---VEQLRTHVRHLCSLHP-AAKHGG 476 (630)
Q Consensus 401 ~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga---~eQLr~~~~~l~~~~~-~~~~tv 476 (630)
+++|.+.+| ++++|+|||||||||+++.|++++.+..|+|.+.+.+...... ....+....++.+... ++.+|+
T Consensus 15 ~isl~i~~G--ei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv 92 (354)
T TIGR02142 15 DADFTLPGQ--GVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEARLFPHLSV 92 (354)
T ss_pred EEEEEECCC--CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeEEEecCCccCCCCcH
Confidence 789999999 9999999999999999999999999999999998877643211 1122333444444333 556899
Q ss_pred hhhhHhhhccCCCCH-HHHHHHHHHHhhhcC-CCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCccHHH
Q psy11993 477 REMVQLFEKGYGKDP-AEIAFRAISHARDMH-IDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVD 554 (630)
Q Consensus 477 ~env~l~~~~~~~d~-~~ia~~ai~~a~~~~-~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~Dav~ 554 (630)
.+|+.+......... ...+.++++.+.... .+..+-..|||++++..++++|. .+| .+|++|||+.++|...
T Consensus 93 ~enl~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGqkqRvalAraL~-----~~p-~lllLDEPts~LD~~~ 166 (354)
T TIGR02142 93 RGNLRYGMKRARPSERRISFERVIELLGIGHLLGRLPGRLSGGEKQRVAIGRALL-----SSP-RLLLMDEPLAALDDPR 166 (354)
T ss_pred HHHHHHHhhccChhHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHH-----cCC-CEEEEcCCCcCCCHHH
Confidence 999986533222111 112333444333222 23446678999999999999999 888 5667999999999876
Q ss_pred HHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 555 QLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 555 ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
+. .+.+.+.++... .+.+.|++|+
T Consensus 167 ~~-~l~~~L~~l~~~---~g~tiiivtH 190 (354)
T TIGR02142 167 KY-EILPYLERLHAE---FGIPILYVSH 190 (354)
T ss_pred HH-HHHHHHHHHHHh---cCCEEEEEec
Confidence 53 444555544321 2466777776
No 223
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.55 E-value=1.1e-14 Score=163.29 Aligned_cols=173 Identities=10% Similarity=0.003 Sum_probs=120.2
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccCC-CcCCc
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHP-AAKHG 475 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~-~~~~t 475 (630)
.+|++++|.+.+| ++++|+|||||||||+++.|++.+.+..|+|.+.+.++......+.++....++.+... ++.+|
T Consensus 12 ~il~~vs~~i~~G--e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~t 89 (491)
T PRK10982 12 KALDNVNLKVRPH--SIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISMVHQELNLVLQRS 89 (491)
T ss_pred EeeeeeeEEEcCC--cEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEecccccccCCC
Confidence 4789999999999 99999999999999999999999999999999998876433333333333444444332 45689
Q ss_pred chhhhHhhhcc-CC--CCHHH---HHHHHHHHhhhcC-CCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEecccc
Q psy11993 476 GREMVQLFEKG-YG--KDPAE---IAFRAISHARDMH-IDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALV 548 (630)
Q Consensus 476 v~env~l~~~~-~~--~d~~~---ia~~ai~~a~~~~-~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~ 548 (630)
+.+|+.+.... .+ .+... .+.++++.+.... .+..+-..|||++++..++++|. .+| .+|++|||++
T Consensus 90 v~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lA~al~-----~~p-~lllLDEPt~ 163 (491)
T PRK10982 90 VMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQMIEIAKAFS-----YNA-KIVIMDEPTS 163 (491)
T ss_pred HHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHH-----hCC-CEEEEeCCCC
Confidence 99998764211 11 12222 2233333332221 23446678999999999999999 788 5677999999
Q ss_pred CccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 549 GNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 549 g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
|+|...+. .+.+.+.++.. .+.+.|++|+
T Consensus 164 ~LD~~~~~-~l~~~l~~l~~----~g~tvii~tH 192 (491)
T PRK10982 164 SLTEKEVN-HLFTIIRKLKE----RGCGIVYISH 192 (491)
T ss_pred CCCHHHHH-HHHHHHHHHHh----CCCEEEEEec
Confidence 99987654 34445555532 2466778886
No 224
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=99.55 E-value=9.4e-15 Score=151.07 Aligned_cols=173 Identities=13% Similarity=0.103 Sum_probs=118.9
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccCC-CcCCc
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHP-AAKHG 475 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~-~~~~t 475 (630)
.+|++++|.+.+| ++++|+||||+||||+++.|++.+.+..|+|.+.+.++.+... ..++....++.+... ++..+
T Consensus 21 ~~l~~isl~i~~G--e~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~-~~~~~~i~~v~q~~~~~~~~t 97 (265)
T PRK10253 21 TVAENLTVEIPDG--HFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYAS-KEVARRIGLLAQNATTPGDIT 97 (265)
T ss_pred EEeeecceEECCC--CEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCH-HHHhhheEEeeccCcCCCCCc
Confidence 4899999999999 9999999999999999999999999999999998877644322 233444455554433 44578
Q ss_pred chhhhHhhhccC-----CCCH--HHHHHHHHHHhhhcC-CCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccc
Q psy11993 476 GREMVQLFEKGY-----GKDP--AEIAFRAISHARDMH-IDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEAL 547 (630)
Q Consensus 476 v~env~l~~~~~-----~~d~--~~ia~~ai~~a~~~~-~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~ 547 (630)
+.+|+.+..... .... ...+..+++.+.... .+..+-..||+++++..++++|. .+| .++++|||+
T Consensus 98 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~laral~-----~~p-~llllDEPt 171 (265)
T PRK10253 98 VQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAWIAMVLA-----QET-AIMLLDEPT 171 (265)
T ss_pred HHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCChHHHHHHHHHHHHh-----cCC-CEEEEeCcc
Confidence 999987642111 0111 112333443332221 24446778999999999999999 788 566699999
Q ss_pred cCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 548 VGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 548 ~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
.|+|...+. .+.+.+.++.. ..+.+.|++|+
T Consensus 172 ~gLD~~~~~-~l~~~L~~l~~---~~~~tiii~tH 202 (265)
T PRK10253 172 TWLDISHQI-DLLELLSELNR---EKGYTLAAVLH 202 (265)
T ss_pred ccCCHHHHH-HHHHHHHHHHH---hcCCEEEEEeC
Confidence 999987653 44455555532 12466777775
No 225
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.55 E-value=1.1e-14 Score=163.67 Aligned_cols=173 Identities=17% Similarity=0.044 Sum_probs=122.1
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccCC-CcCCc
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHP-AAKHG 475 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~-~~~~t 475 (630)
.+|++++|.+.+| ++++|+||||+||||+++.|++.+.+..|+|.+.+.++.+....+.++....++.+... ++.+|
T Consensus 18 ~il~~isl~i~~G--e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~t 95 (501)
T PRK11288 18 KALDDISFDCRAG--QVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAGVAIIYQELHLVPEMT 95 (501)
T ss_pred EEEeeeeEEEeCC--cEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCCEEEEEechhccCCCC
Confidence 4789999999999 99999999999999999999999999999999988876433333333444445554332 55689
Q ss_pred chhhhHhhhc--cCC-CCHHH---HHHHHHHHhhhcC-CCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEecccc
Q psy11993 476 GREMVQLFEK--GYG-KDPAE---IAFRAISHARDMH-IDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALV 548 (630)
Q Consensus 476 v~env~l~~~--~~~-~d~~~---ia~~ai~~a~~~~-~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~ 548 (630)
+.+|+.+... ..+ .+... .+.++++.+.... .+..+-+.|||++++..++++|. .+| .+|++|||++
T Consensus 96 v~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~-----~~p-~lllLDEPt~ 169 (501)
T PRK11288 96 VAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKALA-----RNA-RVIAFDEPTS 169 (501)
T ss_pred HHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCchhhCCHHHHHHHHHHHHHH-----hCC-CEEEEcCCCC
Confidence 9999987432 112 12222 2333343333221 24456778999999999999999 788 5677999999
Q ss_pred CccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 549 GNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 549 g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
++|...+. .+.+.+.++.. .+.+.|++|+
T Consensus 170 ~LD~~~~~-~l~~~l~~~~~----~g~tiiiitH 198 (501)
T PRK11288 170 SLSAREIE-QLFRVIRELRA----EGRVILYVSH 198 (501)
T ss_pred CCCHHHHH-HHHHHHHHHHh----CCCEEEEEeC
Confidence 99987653 44455655532 2567788887
No 226
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.55 E-value=7.5e-15 Score=148.04 Aligned_cols=168 Identities=16% Similarity=0.122 Sum_probs=115.3
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccCCCcCCcc
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHPAAKHGG 476 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~~~~~tv 476 (630)
.+|++++|.+.+| ++++|+||||+||||+++.|++.+.+..|+|.+.+.++..... ..++....++.+...+...|+
T Consensus 17 ~~l~~isl~i~~G--~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~-~~~~~~i~~~~q~~~~~~~tv 93 (229)
T cd03254 17 PVLKDINFSIKPG--ETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISR-KSLRSMIGVVLQDTFLFSGTI 93 (229)
T ss_pred ccccceEEEEcCC--CEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCH-HHHhhhEEEecCCchhhhhHH
Confidence 4789999999999 9999999999999999999999999999999998876643222 233444455555433334588
Q ss_pred hhhhHhhhccCCCCHHHHHHHHHHH------hhhc--CC----CeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEe
Q psy11993 477 REMVQLFEKGYGKDPAEIAFRAISH------ARDM--HI----DVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVG 544 (630)
Q Consensus 477 ~env~l~~~~~~~d~~~ia~~ai~~------a~~~--~~----D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~ 544 (630)
.+|+.++...+ .... ...+++. +... ++ +..+...||+++++..++++|. .+| .++++|
T Consensus 94 ~~~~~~~~~~~--~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~-----~~p-~llllD 164 (229)
T cd03254 94 MENIRLGRPNA--TDEE-VIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAML-----RDP-KILILD 164 (229)
T ss_pred HHHHhccCCCC--CHHH-HHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHh-----cCC-CEEEEe
Confidence 88887653221 1111 1111111 1110 11 1224678999999999999999 888 566699
Q ss_pred ccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 545 EALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 545 E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
||+.|+|..... .+.+.+..+.. +.+.+++|+
T Consensus 165 EP~~~LD~~~~~-~l~~~l~~~~~-----~~tii~~sh 196 (229)
T cd03254 165 EATSNIDTETEK-LIQEALEKLMK-----GRTSIIIAH 196 (229)
T ss_pred CccccCCHHHHH-HHHHHHHHhcC-----CCEEEEEec
Confidence 999999987654 45555655531 466778886
No 227
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=99.55 E-value=1.5e-14 Score=144.59 Aligned_cols=169 Identities=15% Similarity=0.111 Sum_probs=115.8
Q ss_pred hhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccCC-CcCCcch
Q psy11993 399 LRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHP-AAKHGGR 477 (630)
Q Consensus 399 L~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~-~~~~tv~ 477 (630)
+.+++|.+.+| ++++|+||||+||||+++.|++.+.+..|+|.+.+.|+.+... .+....++.+... ++.+|+.
T Consensus 14 ~~~~s~~i~~G--e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~---~~~~i~~v~q~~~~~~~~t~~ 88 (213)
T TIGR01277 14 PMEFDLNVADG--EIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAP---YQRPVSMLFQENNLFAHLTVR 88 (213)
T ss_pred ceeeEEEEeCC--cEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCCh---hccceEEEeccCccCCCCcHH
Confidence 45789999999 9999999999999999999999999999999999888754221 2333444444333 4568999
Q ss_pred hhhHhhhc-cCCCCH--HHHHHHHHHHhhhcC-CCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCccHH
Q psy11993 478 EMVQLFEK-GYGKDP--AEIAFRAISHARDMH-IDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAV 553 (630)
Q Consensus 478 env~l~~~-~~~~d~--~~ia~~ai~~a~~~~-~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~Dav 553 (630)
+|+.+... ...... ...+.++++.+.... .+..+-..||+++++..++++|. .+| .++++|||+.++|..
T Consensus 89 en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~-----~~p-~llllDEPt~~LD~~ 162 (213)
T TIGR01277 89 QNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQRVALARCLV-----RPN-PILLLDEPFSALDPL 162 (213)
T ss_pred HHHHhHhhccCCccHHHHHHHHHHHHHcCcHHHhhCCcccCCHHHHHHHHHHHHHh-----cCC-CEEEEcCCCccCCHH
Confidence 99875321 111111 122233444333221 23445678999999999999999 788 566699999999987
Q ss_pred HHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 554 DQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 554 ~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
.+. .+.+.+.++... .+.+.|++|+
T Consensus 163 ~~~-~~~~~l~~~~~~---~~~tii~vsh 187 (213)
T TIGR01277 163 LRE-EMLALVKQLCSE---RQRTLLMVTH 187 (213)
T ss_pred HHH-HHHHHHHHHHHh---cCCEEEEEeC
Confidence 654 444555544321 1456677776
No 228
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.55 E-value=4.1e-14 Score=158.99 Aligned_cols=209 Identities=15% Similarity=0.143 Sum_probs=137.7
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHh-cCCeEEEeecccCCccHHHHHHHHHhhhcccC----CC
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIE-NNLNVLIAACDTFRAGAVEQLRTHVRHLCSLH----PA 471 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~-~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~----~~ 471 (630)
.+|++++|.+.+| ++++|+|||||||||+++.|++.+.| ..|+|.+.+.++........++....++.+.. .+
T Consensus 274 ~~l~~is~~i~~G--e~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~l~ 351 (500)
T TIGR02633 274 KRVDDVSFSLRRG--EILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIRAGIAMVPEDRKRHGIV 351 (500)
T ss_pred cccccceeEEeCC--cEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHHHHHhCCCEEcCcchhhCCcC
Confidence 4899999999999 99999999999999999999999985 78999998877643222334444445555542 25
Q ss_pred cCCcchhhhHhhhc--c---CCCCHH---HHHHHHHHHhhhcC--CCeeeeccccchhchHHHHHHHHhhhhhcCCCeEE
Q psy11993 472 AKHGGREMVQLFEK--G---YGKDPA---EIAFRAISHARDMH--IDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLL 541 (630)
Q Consensus 472 ~~~tv~env~l~~~--~---~~~d~~---~ia~~ai~~a~~~~--~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VL 541 (630)
+.+|+.+|+.+... . +..... ..+.++++.+.... .+..+-+.|||++++..++++|. .+| .+|
T Consensus 352 ~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~la~al~-----~~p-~ll 425 (500)
T TIGR02633 352 PILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIGRLSGGNQQKAVLAKMLL-----TNP-RVL 425 (500)
T ss_pred CCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCccccCCHHHHHHHHHHHHHh-----hCC-CEE
Confidence 56889999876321 1 111221 22344455444421 34556788999999999999999 788 577
Q ss_pred EEeccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcccCCcCccHHHHHHHHHHhCCcEEEEecCCCCc--cCCCC
Q psy11993 542 FVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGTGQTYT--DLKSL 619 (630)
Q Consensus 542 lV~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK~D~~~~~~G~~ls~~~~~g~PI~fvg~Gq~v~--DL~~~ 619 (630)
++|||+.++|...+.. +.+.+..+.. .+.+.|++|+ | ...+..+ .--+.++..|+-+. +...+
T Consensus 426 lLDEPt~~LD~~~~~~-l~~~l~~l~~----~g~tviivsH-d-----~~~~~~~----~d~v~~l~~G~i~~~~~~~~~ 490 (500)
T TIGR02633 426 ILDEPTRGVDVGAKYE-IYKLINQLAQ----EGVAIIVVSS-E-----LAEVLGL----SDRVLVIGEGKLKGDFVNHAL 490 (500)
T ss_pred EEcCCCCCcCHhHHHH-HHHHHHHHHh----CCCEEEEECC-C-----HHHHHHh----CCEEEEEECCEEEEEEccccC
Confidence 7999999999876543 3344544432 2567788887 2 1112222 22455666666554 23445
Q ss_pred CHHHHHHHh
Q psy11993 620 NAKAVVNAL 628 (630)
Q Consensus 620 ~~~~~v~~L 628 (630)
+...++++.
T Consensus 491 ~~~~~~~~~ 499 (500)
T TIGR02633 491 TQEQVLAAA 499 (500)
T ss_pred CHHHHHHhh
Confidence 555666543
No 229
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.55 E-value=2e-14 Score=150.43 Aligned_cols=172 Identities=16% Similarity=0.137 Sum_probs=117.1
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHH--h---cCCeEEEeecccCCcc-HHHHHHHHHhhhcccCC
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLI--E---NNLNVLIAACDTFRAG-AVEQLRTHVRHLCSLHP 470 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~--~---~ggkVlI~~~Dt~R~g-a~eQLr~~~~~l~~~~~ 470 (630)
.+|++++|.+.+| ++++|+||||+||||+++.|++++. + ..|+|.+.+.++.... ....++....++.+...
T Consensus 53 ~il~~vsl~i~~G--e~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~~ 130 (286)
T PRK14275 53 EAVKKVNADILSK--YVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEVLLRKKIGMVFQKPN 130 (286)
T ss_pred EEEeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccchHHhhhcEEEECCCCC
Confidence 4789999999999 9999999999999999999999864 3 8899999887763211 11123444455555433
Q ss_pred CcCCcchhhhHhhhccCCCC-HH---HHHHHHHHHhhh-----cCCCeeeeccccchhchHHHHHHHHhhhhhcCCCeEE
Q psy11993 471 AAKHGGREMVQLFEKGYGKD-PA---EIAFRAISHARD-----MHIDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLL 541 (630)
Q Consensus 471 ~~~~tv~env~l~~~~~~~d-~~---~ia~~ai~~a~~-----~~~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VL 541 (630)
....|+.+|+.+.....+.. .. +.+.++++.+.. ...+..+...|||++++..++++|. .+| .+|
T Consensus 131 l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~-----~~p-~ll 204 (286)
T PRK14275 131 PFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSGGQQQRLCVARTLA-----VEP-EIL 204 (286)
T ss_pred CCccCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhhHhhCChhhCCHHHHHHHHHHHHHh-----cCC-CEE
Confidence 33359999998754322221 11 122233333221 1124446788999999999999999 788 567
Q ss_pred EEeccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 542 FVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 542 lV~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
++|||+.|+|...+ ..+.+.+.++.. ..+.|++|+
T Consensus 205 lLDEPt~gLD~~~~-~~l~~~L~~~~~-----~~tvIivsH 239 (286)
T PRK14275 205 LLDEPTSALDPKAT-AKIEDLIQELRG-----SYTIMIVTH 239 (286)
T ss_pred EEeCCCccCCHHHH-HHHHHHHHHHhc-----CCeEEEEeC
Confidence 79999999998765 345566666542 346677776
No 230
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=99.55 E-value=7.8e-15 Score=147.56 Aligned_cols=167 Identities=17% Similarity=0.133 Sum_probs=118.1
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccCC-CcCCc
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHP-AAKHG 475 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~-~~~~t 475 (630)
.+|++++|.+.+| ++++|+||||+||||++..|++.+.+..|+|.+.+.+..+. ..+ ...++.+... ++.+|
T Consensus 14 ~~l~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~----~~~-~~~~~~q~~~~~~~~t 86 (223)
T TIGR03740 14 TAVNNISLTVPKN--SVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRK----DLH-KIGSLIESPPLYENLT 86 (223)
T ss_pred EEEeeeEEEEcCC--cEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccc----ccc-cEEEEcCCCCccccCC
Confidence 4789999999999 99999999999999999999999999999999988665221 111 2333333322 44579
Q ss_pred chhhhHhhhccCCCCHHHHHHHHHHHhhhcC-CCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCccHHH
Q psy11993 476 GREMVQLFEKGYGKDPAEIAFRAISHARDMH-IDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVD 554 (630)
Q Consensus 476 v~env~l~~~~~~~d~~~ia~~ai~~a~~~~-~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~Dav~ 554 (630)
+.+|+.++...++.+. ..+..+++.+.... .+..+.+.||+++++..++++|. .+| .++++|||+.|+|...
T Consensus 87 ~~~~~~~~~~~~~~~~-~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~-----~~p-~llllDEP~~~LD~~~ 159 (223)
T TIGR03740 87 ARENLKVHTTLLGLPD-SRIDEVLNIVDLTNTGKKKAKQFSLGMKQRLGIAIALL-----NHP-KLLILDEPTNGLDPIG 159 (223)
T ss_pred HHHHHHHHHHHcCCCH-HHHHHHHHHcCCcHHHhhhHhhCCHHHHHHHHHHHHHh-----cCC-CEEEECCCccCCCHHH
Confidence 9999976543333332 22333444333222 24446778999999999999999 788 5677999999999876
Q ss_pred HHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 555 QLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 555 ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
+ ..|.+.+.++.. .+.+.+++|+
T Consensus 160 ~-~~l~~~L~~~~~----~~~tiii~sH 182 (223)
T TIGR03740 160 I-QELRELIRSFPE----QGITVILSSH 182 (223)
T ss_pred H-HHHHHHHHHHHH----CCCEEEEEcC
Confidence 5 455666666542 2456777776
No 231
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.55 E-value=1.2e-14 Score=140.59 Aligned_cols=138 Identities=22% Similarity=0.183 Sum_probs=97.4
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccCCCcCCcc
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHPAAKHGG 476 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~~~~~tv 476 (630)
.+|++++|.+.+| ++++|+||||+||||+++.|++.+.+..|+|.+.+.++.+.... .++....++.+.......++
T Consensus 16 ~~l~~i~~~i~~G--~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~-~~~~~i~~~~~~~~~~~~t~ 92 (171)
T cd03228 16 PVLKDVSLTIKPG--EKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLE-SLRKNIAYVPQDPFLFSGTI 92 (171)
T ss_pred ccccceEEEEcCC--CEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHH-HHHhhEEEEcCCchhccchH
Confidence 4788999999999 99999999999999999999999999999999988776432222 22222222222111101111
Q ss_pred hhhhHhhhccCCCCHHHHHHHHHHHhhhcCCCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCccHHHHH
Q psy11993 477 REMVQLFEKGYGKDPAEIAFRAISHARDMHIDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQL 556 (630)
Q Consensus 477 ~env~l~~~~~~~d~~~ia~~ai~~a~~~~~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~Dav~ql 556 (630)
.+|+ .||+++++..++++|. .+| .++++|||+.|+|...+
T Consensus 93 ~e~l---------------------------------LS~G~~~rl~la~al~-----~~p-~llllDEP~~gLD~~~~- 132 (171)
T cd03228 93 RENI---------------------------------LSGGQRQRIAIARALL-----RDP-PILILDEATSALDPETE- 132 (171)
T ss_pred HHHh---------------------------------hCHHHHHHHHHHHHHh-----cCC-CEEEEECCCcCCCHHHH-
Confidence 1111 8999999999999999 788 56669999999998764
Q ss_pred HHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 557 VKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 557 ~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
..+.+.+.++.. ..+.+++|+
T Consensus 133 ~~l~~~l~~~~~-----~~tii~~sh 153 (171)
T cd03228 133 ALILEALRALAK-----GKTVIVIAH 153 (171)
T ss_pred HHHHHHHHHhcC-----CCEEEEEec
Confidence 345555655432 356667676
No 232
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.55 E-value=2.5e-14 Score=148.13 Aligned_cols=172 Identities=18% Similarity=0.166 Sum_probs=116.3
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHH-----hcCCeEEEeecccCCc-cHHHHHHHHHhhhcccCC
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLI-----ENNLNVLIAACDTFRA-GAVEQLRTHVRHLCSLHP 470 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~-----~~ggkVlI~~~Dt~R~-ga~eQLr~~~~~l~~~~~ 470 (630)
.+|++++|.+.+| ++++|+|+||+||||+++.|++.+. +..|+|.+.+.+.... .....++....++.+...
T Consensus 35 ~il~~vsl~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~ 112 (268)
T PRK14248 35 RAVNDISMDIEKH--AVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINVVNLRREIGMVFQKPN 112 (268)
T ss_pred eeeeceEEEEcCC--CEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccHHHHhccEEEEecCCc
Confidence 4899999999999 9999999999999999999999864 5789999988876431 112233444555555433
Q ss_pred CcCCcchhhhHhhhccCCCCH-H---HHHHHHHHHhhhc-----CCCeeeeccccchhchHHHHHHHHhhhhhcCCCeEE
Q psy11993 471 AAKHGGREMVQLFEKGYGKDP-A---EIAFRAISHARDM-----HIDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLL 541 (630)
Q Consensus 471 ~~~~tv~env~l~~~~~~~d~-~---~ia~~ai~~a~~~-----~~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VL 541 (630)
....|+.+|+.+......... . ..+..++..+... ..+..+...||+++++..++++|. .+| .+|
T Consensus 113 ~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrl~laral~-----~~p-~ll 186 (268)
T PRK14248 113 PFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKDRLHSSALSLSGGQQQRLCIARTLA-----MKP-AVL 186 (268)
T ss_pred cCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHHHHhcCcccCCHHHHHHHHHHHHHh-----CCC-CEE
Confidence 333589999876432222111 1 1122333322211 013345678999999999999999 788 566
Q ss_pred EEeccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 542 FVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 542 lV~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
++|||+.|+|...+. .+.+.+.++.. ..+.|++|+
T Consensus 187 lLDEPt~~LD~~~~~-~l~~~l~~~~~-----~~tiii~tH 221 (268)
T PRK14248 187 LLDEPASALDPISNA-KIEELITELKE-----EYSIIIVTH 221 (268)
T ss_pred EEcCCCcccCHHHHH-HHHHHHHHHhc-----CCEEEEEEe
Confidence 699999999987653 45566666542 346677776
No 233
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.55 E-value=2.3e-14 Score=147.66 Aligned_cols=171 Identities=18% Similarity=0.197 Sum_probs=115.4
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEee------cccCCccHHHHHHHHHhhhcccCC
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAA------CDTFRAGAVEQLRTHVRHLCSLHP 470 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~------~Dt~R~ga~eQLr~~~~~l~~~~~ 470 (630)
.+|++++|.+.+| ++++|+||||+||||++..|++.+.+..|+|.+.+ .++.+.... .++....++.+...
T Consensus 24 ~~l~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~-~~~~~i~~~~q~~~ 100 (257)
T PRK14246 24 AILKDITIKIPNN--SIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAI-KLRKEVGMVFQQPN 100 (257)
T ss_pred eeEeceEEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCHH-HHhcceEEEccCCc
Confidence 4799999999999 99999999999999999999999998876665543 444332222 23333444444333
Q ss_pred -CcCCcchhhhHhhhccCCC-CHHHH---HHHHHHHhhhc-----CCCeeeeccccchhchHHHHHHHHhhhhhcCCCeE
Q psy11993 471 -AAKHGGREMVQLFEKGYGK-DPAEI---AFRAISHARDM-----HIDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLL 540 (630)
Q Consensus 471 -~~~~tv~env~l~~~~~~~-d~~~i---a~~ai~~a~~~-----~~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~V 540 (630)
++.+|+.+|+.+.....+. ...+. +..+++.+... ..+..+.+.||+++++..++++|. .+| .+
T Consensus 101 ~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral~-----~~P-~l 174 (257)
T PRK14246 101 PFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPASQLSGGQQQRLTIARALA-----LKP-KV 174 (257)
T ss_pred cCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccchhhhcCCcccCCHHHHHHHHHHHHHH-----cCC-CE
Confidence 4557999999865332221 22222 23333333321 123446778999999999999999 888 56
Q ss_pred EEEeccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 541 LFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 541 LlV~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
+++|||+.|+|...+ ..+.+.+.++.. ..+.|++|+
T Consensus 175 lllDEPt~~LD~~~~-~~l~~~l~~~~~-----~~tiilvsh 210 (257)
T PRK14246 175 LLMDEPTSMIDIVNS-QAIEKLITELKN-----EIAIVIVSH 210 (257)
T ss_pred EEEcCCCccCCHHHH-HHHHHHHHHHhc-----CcEEEEEEC
Confidence 669999999998765 445556655532 356677776
No 234
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=99.55 E-value=2.5e-14 Score=146.47 Aligned_cols=172 Identities=15% Similarity=0.103 Sum_probs=116.7
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHH--Hh---cCCeEEEeecccCCcc-HHHHHHHHHhhhcccCC
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWL--IE---NNLNVLIAACDTFRAG-AVEQLRTHVRHLCSLHP 470 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l--~~---~ggkVlI~~~Dt~R~g-a~eQLr~~~~~l~~~~~ 470 (630)
.+|++++|.+.+| ++++|+||||+||||+++.|++.+ .+ ..|+|.+.+.++.+.. ....++....++.+...
T Consensus 19 ~~l~~~s~~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~ 96 (252)
T PRK14239 19 KALNSVSLDFYPN--EITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTVDLRKEIGMVFQQPN 96 (252)
T ss_pred eeeeeeeEEEcCC--cEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchHhhhhcEEEEecCCc
Confidence 4789999999999 999999999999999999999985 35 4799999988764321 12234445555555443
Q ss_pred CcCCcchhhhHhhhccCCCC-HH---HHHHHHHHHhhhc-----CCCeeeeccccchhchHHHHHHHHhhhhhcCCCeEE
Q psy11993 471 AAKHGGREMVQLFEKGYGKD-PA---EIAFRAISHARDM-----HIDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLL 541 (630)
Q Consensus 471 ~~~~tv~env~l~~~~~~~d-~~---~ia~~ai~~a~~~-----~~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VL 541 (630)
...+|+.+|+.+.....+.. .. ..+..+++.+... ..+..+...||+++++..++++|. .+| .++
T Consensus 97 ~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~-----~~p-~ll 170 (252)
T PRK14239 97 PFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQQQRVCIARVLA-----TSP-KII 170 (252)
T ss_pred cCcCcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHHHHhcCcccCCHHHHHHHHHHHHHh-----cCC-CEE
Confidence 33479999997653222211 11 1122233322210 123446778999999999999999 788 566
Q ss_pred EEeccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 542 FVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 542 lV~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
++|||+.|+|...+. .+.+.+.++.. ..+.|++|+
T Consensus 171 llDEPt~~LD~~~~~-~l~~~l~~~~~-----~~tii~~sH 205 (252)
T PRK14239 171 LLDEPTSALDPISAG-KIEETLLGLKD-----DYTMLLVTR 205 (252)
T ss_pred EEcCCccccCHHHHH-HHHHHHHHHhh-----CCeEEEEEC
Confidence 799999999987653 44556655532 356677776
No 235
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=99.55 E-value=1.6e-14 Score=143.63 Aligned_cols=161 Identities=17% Similarity=0.182 Sum_probs=117.3
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccCCCcCCcc
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHPAAKHGG 476 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~~~~~tv 476 (630)
.+|++++|.+.+| ++++|+||||+||||+++.|++.+.+..|+|.+.+.+...... ..++....++.+...+...|+
T Consensus 22 ~~l~~isl~i~~G--~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~-~~~~~~i~~v~q~~~~~~~tv 98 (207)
T cd03369 22 PVLKNVSFKVKAG--EKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPL-EDLRSSLTIIPQDPTLFSGTI 98 (207)
T ss_pred ccccCceEEECCC--CEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCH-HHHHhhEEEEecCCcccCccH
Confidence 4789999999999 9999999999999999999999999999999998887633322 233444555555444445699
Q ss_pred hhhhHhhhccCCCCHHHHHHHHHHHhhhcCCCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCccHHHHH
Q psy11993 477 REMVQLFEKGYGKDPAEIAFRAISHARDMHIDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQL 556 (630)
Q Consensus 477 ~env~l~~~~~~~d~~~ia~~ai~~a~~~~~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~Dav~ql 556 (630)
.+|+.++.. ..... ..+++ + .+.-....||+++++..++++|. .+| .++++|||+.++|...+
T Consensus 99 ~~~l~~~~~---~~~~~-~~~~l---~---~~~~~~~LS~G~~qrv~laral~-----~~p-~llllDEP~~~LD~~~~- 161 (207)
T cd03369 99 RSNLDPFDE---YSDEE-IYGAL---R---VSEGGLNLSQGQRQLLCLARALL-----KRP-RVLVLDEATASIDYATD- 161 (207)
T ss_pred HHHhcccCC---CCHHH-HHHHh---h---ccCCCCcCCHHHHHHHHHHHHHh-----hCC-CEEEEeCCcccCCHHHH-
Confidence 999865431 12221 22222 2 33446678999999999999998 788 56669999999998765
Q ss_pred HHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 557 VKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 557 ~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
..+.+.+.++.. +.+.|++|+
T Consensus 162 ~~l~~~l~~~~~-----~~tiii~th 182 (207)
T cd03369 162 ALIQKTIREEFT-----NSTILTIAH 182 (207)
T ss_pred HHHHHHHHHhcC-----CCEEEEEeC
Confidence 445566665531 467788886
No 236
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=99.55 E-value=2.1e-14 Score=153.28 Aligned_cols=174 Identities=16% Similarity=0.113 Sum_probs=119.3
Q ss_pred hhhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHH----hcCCeEEEeecccCCccHHHHHHH----HHhhhcc
Q psy11993 396 VDILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLI----ENNLNVLIAACDTFRAGAVEQLRT----HVRHLCS 467 (630)
Q Consensus 396 ~~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~----~~ggkVlI~~~Dt~R~ga~eQLr~----~~~~l~~ 467 (630)
..+|++|+|.+.+| ++++|+|+|||||||+++.|++++. +..|+|.+.+.|+.+.... +++. ...++.+
T Consensus 20 ~~~l~~vsl~i~~G--e~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~-~~~~~~~~~i~~v~Q 96 (330)
T PRK15093 20 VKAVDRVSMTLTEG--EIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPR-ERRKLVGHNVSMIFQ 96 (330)
T ss_pred EEEEeeeEEEECCC--CEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHH-HHHHHhCCCEEEEec
Confidence 45899999999999 9999999999999999999999986 4679999999887655432 2222 2334444
Q ss_pred cCC---CcCCcchhhhHhhhccC---C---CCH---HHHHHHHHHHhhhcC----CCeeeeccccchhchHHHHHHHHhh
Q psy11993 468 LHP---AAKHGGREMVQLFEKGY---G---KDP---AEIAFRAISHARDMH----IDVVLIDTAGRMQDNEPLMRALAKL 531 (630)
Q Consensus 468 ~~~---~~~~tv~env~l~~~~~---~---~d~---~~ia~~ai~~a~~~~----~D~vlIDTaGr~~~~~~L~~aL~kl 531 (630)
... .+.+++.+++......+ + ... ...+.++++.+.... .+......|||++++..++++|.
T Consensus 97 ~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p~~LSgG~~QRv~iArAL~-- 174 (330)
T PRK15093 97 EPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFPYELTEGECQKVMIAIALA-- 174 (330)
T ss_pred CcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHHHHHHHHH--
Confidence 322 34578888875422111 1 111 122334444433322 13346678999999999999999
Q ss_pred hhhcCCCeEEEEeccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 532 VKVNQPDLLLFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 532 ~~~~~Pd~VLlV~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
.+| .+|++|||++++|...+.. +.+.+.++.. ..+++.|++|+
T Consensus 175 ---~~P-~llilDEPts~LD~~~~~~-i~~lL~~l~~---~~g~tii~itH 217 (330)
T PRK15093 175 ---NQP-RLLIADEPTNAMEPTTQAQ-IFRLLTRLNQ---NNNTTILLISH 217 (330)
T ss_pred ---CCC-CEEEEeCCCCcCCHHHHHH-HHHHHHHHHH---hcCCEEEEEEC
Confidence 889 5666999999999877643 4445555432 12578888887
No 237
>KOG0055|consensus
Probab=99.55 E-value=2.5e-14 Score=169.20 Aligned_cols=174 Identities=20% Similarity=0.187 Sum_probs=135.6
Q ss_pred CCCc-chhhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccC
Q psy11993 391 SPKR-RVDILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLH 469 (630)
Q Consensus 391 ~~~~-~~~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~ 469 (630)
.|.+ ...+|+|+++.++.| +.++||||+||||||.+..|-+++.|..|+|.|.+.|+.... ...||.+...++|.+
T Consensus 997 YPsRP~~~Il~~l~l~i~~G--qTvALVG~SGsGKSTvI~LLeRfYdp~~G~V~IDg~dik~ln-l~~LR~~i~lVsQEP 1073 (1228)
T KOG0055|consen 997 YPTRPDVPVLNNLSLSIRAG--QTVALVGPSGSGKSTVISLLERFYDPDAGKVKIDGVDIKDLN-LKWLRKQIGLVSQEP 1073 (1228)
T ss_pred CCCCCCchhhcCCcEEecCC--CEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCcccccCC-HHHHHHhcceeccCc
Confidence 3544 578999999999999 999999999999999999999999999999999999985544 568999999999988
Q ss_pred CCcCCcchhhhHhhhccCCCCHHHHHHHHHHHhhh--------cCCCeeee----ccccchhchHHHHHHHHhhhhhcCC
Q psy11993 470 PAAKHGGREMVQLFEKGYGKDPAEIAFRAISHARD--------MHIDVVLI----DTAGRMQDNEPLMRALAKLVKVNQP 537 (630)
Q Consensus 470 ~~~~~tv~env~l~~~~~~~d~~~ia~~ai~~a~~--------~~~D~vlI----DTaGr~~~~~~L~~aL~kl~~~~~P 537 (630)
..+..|++||+.+.. ...+..++ .+|.+.+.. .+||..+. .+|||+.||.+++|||. .+|
T Consensus 1074 ~LF~~TIrENI~YG~--~~vs~~eI-i~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQRIAIARAil-----RnP 1145 (1228)
T KOG0055|consen 1074 VLFNGTIRENIAYGS--EEVSEEEI-IEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQRIAIARAIL-----RNP 1145 (1228)
T ss_pred hhhcccHHHHHhccC--CCCCHHHH-HHHHHHhhhHHHHhcCcCcccCccCcccCcCCchHHHHHHHHHHHH-----cCC
Confidence 888999999998761 11233333 334333322 46787765 35999999999999999 888
Q ss_pred CeEEEEeccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 538 DLLLFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 538 d~VLlV~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
.||++||+|+.+|+... +...++|.+... +.+.||+.+
T Consensus 1146 -kILLLDEATSALDseSE-rvVQeALd~a~~-----gRT~IvIAH 1183 (1228)
T KOG0055|consen 1146 -KILLLDEATSALDSESE-RVVQEALDRAME-----GRTTIVIAH 1183 (1228)
T ss_pred -CeeeeeccchhhhhhhH-HHHHHHHHHhhc-----CCcEEEEec
Confidence 78889999999997653 444556654432 456666665
No 238
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=99.54 E-value=2.3e-14 Score=153.09 Aligned_cols=174 Identities=16% Similarity=0.108 Sum_probs=120.0
Q ss_pred hhhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhc---CCeEEEeecccCCccHHHHHHH----HHhhhccc
Q psy11993 396 VDILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIEN---NLNVLIAACDTFRAGAVEQLRT----HVRHLCSL 468 (630)
Q Consensus 396 ~~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~---ggkVlI~~~Dt~R~ga~eQLr~----~~~~l~~~ 468 (630)
..+|++++|.+.+| ++++|+|+|||||||++..|++++.+. .|+|.+.+.|+.+.... +++. ...++.+.
T Consensus 29 ~~~l~~vsl~i~~G--e~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~-~~~~~r~~~i~~v~Q~ 105 (330)
T PRK09473 29 VTAVNDLNFSLRAG--ETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEK-ELNKLRAEQISMIFQD 105 (330)
T ss_pred EEEEeeeEEEEcCC--CEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHH-HHHHHhcCCEEEEEcC
Confidence 45899999999999 999999999999999999999999885 89999999998765543 3332 23344443
Q ss_pred C---CCcCCcchhhhHhhhccC-CCCHHHH---HHHHHHHhhhcC----CCeeeeccccchhchHHHHHHHHhhhhhcCC
Q psy11993 469 H---PAAKHGGREMVQLFEKGY-GKDPAEI---AFRAISHARDMH----IDVVLIDTAGRMQDNEPLMRALAKLVKVNQP 537 (630)
Q Consensus 469 ~---~~~~~tv~env~l~~~~~-~~d~~~i---a~~ai~~a~~~~----~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~P 537 (630)
. ..+.+++.+++......+ +.+..+. +.++++.+...+ ++......|||++++..++++|. .+|
T Consensus 106 ~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~p~~LSgG~~QRv~IArAL~-----~~P 180 (330)
T PRK09473 106 PMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGMRQRVMIAMALL-----CRP 180 (330)
T ss_pred chhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCChHHHhcCCcccCCHHHHHHHHHHHHHH-----cCC
Confidence 2 245578877775432222 2233322 333333332221 12235678999999999999999 899
Q ss_pred CeEEEEeccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 538 DLLLFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 538 d~VLlV~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
.+|++|||+.++|...+... .+.+.++.. ..+.+.+++|+
T Consensus 181 -~llilDEPts~LD~~~~~~i-~~lL~~l~~---~~g~til~iTH 220 (330)
T PRK09473 181 -KLLIADEPTTALDVTVQAQI-MTLLNELKR---EFNTAIIMITH 220 (330)
T ss_pred -CEEEEeCCCccCCHHHHHHH-HHHHHHHHH---HcCCEEEEEEC
Confidence 56669999999998877543 334444432 12577888887
No 239
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=99.54 E-value=2.4e-14 Score=148.69 Aligned_cols=172 Identities=19% Similarity=0.167 Sum_probs=117.8
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHH-----hcCCeEEEeecccCCc-cHHHHHHHHHhhhcccCC
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLI-----ENNLNVLIAACDTFRA-GAVEQLRTHVRHLCSLHP 470 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~-----~~ggkVlI~~~Dt~R~-ga~eQLr~~~~~l~~~~~ 470 (630)
.+|++++|.+.+| ++++|+|+||+||||+++.|++.+. +..|+|.+.+.++.+. .....++....++.+...
T Consensus 38 ~il~~vsl~i~~G--e~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~ 115 (271)
T PRK14238 38 HALKNINLDIHEN--EVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSVEELRTNVGMVFQKPN 115 (271)
T ss_pred ceeeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccHHHHhhhEEEEecCCc
Confidence 4789999999999 9999999999999999999999987 5789999998876431 112233444555555444
Q ss_pred CcCCcchhhhHhhhccCCCC-HHH---HHHHHHHHhhh-----cCCCeeeeccccchhchHHHHHHHHhhhhhcCCCeEE
Q psy11993 471 AAKHGGREMVQLFEKGYGKD-PAE---IAFRAISHARD-----MHIDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLL 541 (630)
Q Consensus 471 ~~~~tv~env~l~~~~~~~d-~~~---ia~~ai~~a~~-----~~~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VL 541 (630)
....|+.+|+.+.....+.. ... .+.++++.+.. ...+..+...||+++++..++++|. .+| .++
T Consensus 116 ~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~LSgGe~qrv~laraL~-----~~p-~ll 189 (271)
T PRK14238 116 PFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQRLCIARCLA-----IEP-DVI 189 (271)
T ss_pred cccccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHHHHHhcCcccCCHHHHHHHHHHHHHH-----cCC-CEE
Confidence 33469999997643222221 111 12222222110 0123446678999999999999999 788 577
Q ss_pred EEeccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 542 FVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 542 lV~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
++|||+.|+|...+. .+.+.+.++.. +.+.|++|+
T Consensus 190 lLDEPt~~LD~~~~~-~l~~~l~~~~~-----~~tiiivsH 224 (271)
T PRK14238 190 LMDEPTSALDPISTL-KVEELVQELKK-----DYSIIIVTH 224 (271)
T ss_pred EEeCCCCcCCHHHHH-HHHHHHHHHHc-----CCEEEEEEc
Confidence 799999999987763 45556665542 356677776
No 240
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.54 E-value=2.8e-14 Score=147.35 Aligned_cols=172 Identities=16% Similarity=0.113 Sum_probs=117.1
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHh-----cCCeEEEeecccCCcc-HHHHHHHHHhhhcccCC
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIE-----NNLNVLIAACDTFRAG-AVEQLRTHVRHLCSLHP 470 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~-----~ggkVlI~~~Dt~R~g-a~eQLr~~~~~l~~~~~ 470 (630)
.+|++++|.+.+| ++++|+|+||+||||+++.|++.+.+ ..|+|.+.+.++.... ....++....++.+...
T Consensus 22 ~~l~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~ 99 (261)
T PRK14263 22 MAVRDSHVPIRKN--EITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPVVVRRYIGMVFQQPN 99 (261)
T ss_pred EEEeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccchHhhhhceEEEecCCc
Confidence 4789999999999 99999999999999999999999875 6899999998874311 11123444455555443
Q ss_pred CcCCcchhhhHhhhccCCCCH--HHHHHHHHHHhhhc-----CCCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEE
Q psy11993 471 AAKHGGREMVQLFEKGYGKDP--AEIAFRAISHARDM-----HIDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFV 543 (630)
Q Consensus 471 ~~~~tv~env~l~~~~~~~d~--~~ia~~ai~~a~~~-----~~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV 543 (630)
+..+|+.+|+.+........+ ...+..+++.+... ..+.-....||+++++..++++|. .+| .++++
T Consensus 100 ~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrv~laral~-----~~p-~llll 173 (261)
T PRK14263 100 PFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKDKLKVSGLSLSGGQQQRLCIARAIA-----TEP-EVLLL 173 (261)
T ss_pred cccccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHH-----cCC-CEEEE
Confidence 446899999976533222111 12233333332211 012224568999999999999999 788 56669
Q ss_pred eccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 544 GEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 544 ~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
|||+.|+|...+. .+.+.+.++.. +.+.|++|+
T Consensus 174 DEPtsgLD~~~~~-~l~~~l~~~~~-----~~tii~isH 206 (261)
T PRK14263 174 DEPCSALDPIATR-RVEELMVELKK-----DYTIALVTH 206 (261)
T ss_pred eCCCccCCHHHHH-HHHHHHHHHhc-----CCeEEEEeC
Confidence 9999999987764 44555655532 345667765
No 241
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.54 E-value=2.4e-14 Score=146.64 Aligned_cols=193 Identities=17% Similarity=0.150 Sum_probs=127.6
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhc-----CCeEEEeecccCCcc-HHHHHHHHHhhhcccCC
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIEN-----NLNVLIAACDTFRAG-AVEQLRTHVRHLCSLHP 470 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~-----ggkVlI~~~Dt~R~g-a~eQLr~~~~~l~~~~~ 470 (630)
.+|++++|.+.+| ++++|+||||+||||+++.|++.+.+. .|+|.+.+.++.+.. ....++....++.+...
T Consensus 18 ~il~~~s~~i~~G--~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~~i~~v~q~~~ 95 (251)
T PRK14249 18 QVLKNINMDFPER--QITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVVNLRKRVGMVFQQPN 95 (251)
T ss_pred eEecceEEEEcCC--CEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccChHHhhceEEEEecCCc
Confidence 4789999999999 999999999999999999999999876 599999887764321 12234445555655444
Q ss_pred CcCCcchhhhHhhhccCCCCH----HHHHHHHHHHhhhc-----CCCeeeeccccchhchHHHHHHHHhhhhhcCCCeEE
Q psy11993 471 AAKHGGREMVQLFEKGYGKDP----AEIAFRAISHARDM-----HIDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLL 541 (630)
Q Consensus 471 ~~~~tv~env~l~~~~~~~d~----~~ia~~ai~~a~~~-----~~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VL 541 (630)
....|+.+|+.+.....+... ...+..+++.+... ..+.-+...||+++++..++++|. .+| .++
T Consensus 96 ~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral~-----~~p-~ll 169 (251)
T PRK14249 96 PFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQRLCIARVLA-----IEP-EVI 169 (251)
T ss_pred cCcCcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhhhHhhCCcccCCHHHHHHHHHHHHHh-----cCC-CEE
Confidence 334699999976432222111 11222233322211 123446678999999999999999 788 566
Q ss_pred EEeccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcccCCcCccHHHHHHHHHHhCCcEEEEecCCCC
Q psy11993 542 FVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGTGQTY 613 (630)
Q Consensus 542 lV~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK~D~~~~~~G~~ls~~~~~g~PI~fvg~Gq~v 613 (630)
++|||+.|+|...+. .+.+.+.++.. +.+.+++|+- ...+. ...--|.++..|+-+
T Consensus 170 lLDEPt~~LD~~~~~-~l~~~l~~~~~-----~~tilivsh~------~~~~~----~~~d~i~~l~~G~i~ 225 (251)
T PRK14249 170 LMDEPCSALDPVSTM-RIEELMQELKQ-----NYTIAIVTHN------MQQAA----RASDWTGFLLTGDLV 225 (251)
T ss_pred EEeCCCccCCHHHHH-HHHHHHHHHhc-----CCEEEEEeCC------HHHHH----hhCCEEEEEeCCeEE
Confidence 699999999987654 45556665531 4577777761 11122 222346777777653
No 242
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=99.54 E-value=1.9e-14 Score=144.23 Aligned_cols=178 Identities=15% Similarity=0.054 Sum_probs=116.8
Q ss_pred hhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEE-EeecccCCccHHHHHHHHHhhhcc-cCCCcCCc
Q psy11993 398 ILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVL-IAACDTFRAGAVEQLRTHVRHLCS-LHPAAKHG 475 (630)
Q Consensus 398 iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVl-I~~~Dt~R~ga~eQLr~~~~~l~~-~~~~~~~t 475 (630)
+|++++|.+.+| ++++|+||||+||||+++.|++.+.+..|+|. +.+... . ++. ...++.+|
T Consensus 2 vl~~vs~~i~~G--e~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i~~~~~~~~-~-------------~~~~~~l~~~lt 65 (213)
T PRK15177 2 VLDKTDFVMGYH--EHIGILAAPGSGKTTLTRLLCGLDAPDEGDFIGLRGDAL-P-------------LGANSFILPGLT 65 (213)
T ss_pred eeeeeeEEEcCC--CEEEEECCCCCCHHHHHHHHhCCccCCCCCEEEecCcee-c-------------cccccccCCcCc
Confidence 578899999999 99999999999999999999999999999996 433211 0 111 12355689
Q ss_pred chhhhHhhhccCCCCHHHHHHHHHHHhhhc-CCCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCccHHH
Q psy11993 476 GREMVQLFEKGYGKDPAEIAFRAISHARDM-HIDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVD 554 (630)
Q Consensus 476 v~env~l~~~~~~~d~~~ia~~ai~~a~~~-~~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~Dav~ 554 (630)
+.+|+.++...++.+.......+....... .++..+-+.||+++++..++++|. .+| .++++|||+.+.|...
T Consensus 66 v~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lS~G~~qrv~la~al~-----~~p-~llllDEP~~~lD~~~ 139 (213)
T PRK15177 66 GEENARMMASLYGLDGDEFSHFCYQLTQLEQCYTDRVSEYSVTMKTHLAFAINLL-----LPC-RLYIADGKLYTGDNAT 139 (213)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHhChhHHhhchHhhcCHHHHHHHHHHHHHh-----cCC-CEEEECCCCccCCHHH
Confidence 999998876555544443332222222211 134556788999999999999999 788 5667999999998876
Q ss_pred HHHHHHHHHhhcccCCCCCCeeEEEEcccCCcCccHHHHHHHHHHhCCcEEEEecCCCC
Q psy11993 555 QLVKFNNAMADHSLSDNPHLIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGTGQTY 613 (630)
Q Consensus 555 ql~~f~~~l~~~~~~~~~~~i~gIIlTK~D~~~~~~G~~ls~~~~~g~PI~fvg~Gq~v 613 (630)
+.. +.+.+.+... .-+.+++|+ ....+..+ .--+..+..|+-+
T Consensus 140 ~~~-~~~~l~~~~~-----~~~ii~vsH------~~~~~~~~----~d~i~~l~~G~i~ 182 (213)
T PRK15177 140 QLR-MQAALACQLQ-----QKGLIVLTH------NPRLIKEH----CHAFGVLLHGKIT 182 (213)
T ss_pred HHH-HHHHHHHHhh-----CCcEEEEEC------CHHHHHHh----cCeeEEEECCeEE
Confidence 543 3333322221 123466665 12222222 2246667777654
No 243
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.54 E-value=3.7e-14 Score=146.07 Aligned_cols=172 Identities=17% Similarity=0.104 Sum_probs=117.4
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHh-----cCCeEEEeecccCCc-cHHHHHHHHHhhhcccCC
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIE-----NNLNVLIAACDTFRA-GAVEQLRTHVRHLCSLHP 470 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~-----~ggkVlI~~~Dt~R~-ga~eQLr~~~~~l~~~~~ 470 (630)
.+|++++|.+.+| ++++|+|+||+||||+++.|++.+.+ ..|+|.+.+.+..+. .....++....++.+...
T Consensus 21 ~il~~isl~i~~G--e~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~ 98 (259)
T PRK14260 21 KAIEGISMDIYRN--KVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRININRLRRQIGMVFQRPN 98 (259)
T ss_pred EeecceEEEEcCC--CEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccchHhhhhheEEEecccc
Confidence 4789999999999 99999999999999999999999875 379999988776431 112233444555555433
Q ss_pred CcCCcchhhhHhhhccCCC-CH---HHHHHHHHHHhhh-----cCCCeeeeccccchhchHHHHHHHHhhhhhcCCCeEE
Q psy11993 471 AAKHGGREMVQLFEKGYGK-DP---AEIAFRAISHARD-----MHIDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLL 541 (630)
Q Consensus 471 ~~~~tv~env~l~~~~~~~-d~---~~ia~~ai~~a~~-----~~~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VL 541 (630)
...+|+.+|+.+.....+. +. ...+.++++.+.. ...+......||+++++..++++|. .+| .++
T Consensus 99 l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~-----~~p-~ll 172 (259)
T PRK14260 99 PFPMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQRLCIARALA-----IKP-KVL 172 (259)
T ss_pred cCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHHh-----cCC-CEE
Confidence 3348999999764322211 11 1222333333221 1123445678999999999999998 788 566
Q ss_pred EEeccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 542 FVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 542 lV~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
++|||+.|+|...+. .+.+.+..+.. ..+.+++|+
T Consensus 173 lLDEPt~~LD~~~~~-~l~~~l~~~~~-----~~tiii~tH 207 (259)
T PRK14260 173 LMDEPCSALDPIATM-KVEELIHSLRS-----ELTIAIVTH 207 (259)
T ss_pred EEcCCCccCCHHHHH-HHHHHHHHHhc-----CCEEEEEeC
Confidence 799999999987654 45556655532 356777776
No 244
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.54 E-value=3.2e-14 Score=145.58 Aligned_cols=192 Identities=19% Similarity=0.159 Sum_probs=125.8
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhc-----CCeEEEeecccCCcc-HHHHHHHHHhhhcccCC
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIEN-----NLNVLIAACDTFRAG-AVEQLRTHVRHLCSLHP 470 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~-----ggkVlI~~~Dt~R~g-a~eQLr~~~~~l~~~~~ 470 (630)
.+|++++|.+.+| ++++|+||||+||||+++.|++.+.+. .|+|.+.+.++.+.. ....++....++.+...
T Consensus 18 ~~l~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~ 95 (252)
T PRK14272 18 QAVKNVNLDVQRG--TVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVAMRRRVGMVFQKPN 95 (252)
T ss_pred EeeccceEEEcCC--CEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHHHhhceeEEEeccCc
Confidence 4789999999999 999999999999999999999998764 699999887764311 11233444455555433
Q ss_pred -CcCCcchhhhHhhhccCCC-CHHH---HHHHHHHHhhh-----cCCCeeeeccccchhchHHHHHHHHhhhhhcCCCeE
Q psy11993 471 -AAKHGGREMVQLFEKGYGK-DPAE---IAFRAISHARD-----MHIDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLL 540 (630)
Q Consensus 471 -~~~~tv~env~l~~~~~~~-d~~~---ia~~ai~~a~~-----~~~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~V 540 (630)
++.+|+.+|+.+.....+. .... .+.+.+..+.. ...+..+...||+++++..++++|. .+| .+
T Consensus 96 ~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~-----~~p-~l 169 (252)
T PRK14272 96 PFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRLKTPATGLSGGQQQRLCIARALA-----VEP-EI 169 (252)
T ss_pred cCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhhhhhhcCCcccCCHHHHHHHHHHHHHh-----cCC-CE
Confidence 4557999999764322221 1211 12222222211 1124556788999999999999999 788 56
Q ss_pred EEEeccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcccCCcCccHHHHHHHHHHhCCcEEEEecCCC
Q psy11993 541 LFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGTGQT 612 (630)
Q Consensus 541 LlV~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK~D~~~~~~G~~ls~~~~~g~PI~fvg~Gq~ 612 (630)
+++|||+.|+|...+ ..+.+.++++.. ..+.|++|+- ... +....-.|.++..|+-
T Consensus 170 lllDEP~~~LD~~~~-~~l~~~l~~~~~-----~~tiii~sH~------~~~----~~~~~d~i~~l~~G~i 225 (252)
T PRK14272 170 LLMDEPTSALDPAST-ARIEDLMTDLKK-----VTTIIIVTHN------MHQ----AARVSDTTSFFLVGDL 225 (252)
T ss_pred EEEeCCCccCCHHHH-HHHHHHHHHHhc-----CCeEEEEeCC------HHH----HHHhCCEEEEEECCEE
Confidence 779999999998764 445556665532 3566777761 111 2222235677776654
No 245
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=99.54 E-value=1.1e-14 Score=156.88 Aligned_cols=167 Identities=12% Similarity=0.031 Sum_probs=115.6
Q ss_pred hhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccH---HHHHHHHHhhhcccCC-CcCCcc
Q psy11993 401 DALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGA---VEQLRTHVRHLCSLHP-AAKHGG 476 (630)
Q Consensus 401 ~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga---~eQLr~~~~~l~~~~~-~~~~tv 476 (630)
+++|.+.+| ++++|+|||||||||++++|++.+.++.|+|.+.+.+...... ....+....++.+... ++.+|+
T Consensus 16 ~vsl~i~~G--e~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv 93 (352)
T PRK11144 16 TVNLTLPAQ--GITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDARLFPHYKV 93 (352)
T ss_pred EEEEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhhCCEEEEcCCcccCCCCcH
Confidence 689999999 9999999999999999999999999999999998877643110 1122333444544333 567899
Q ss_pred hhhhHhhhccCCCCHHHHHHHHHHHhhhcC-CCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCccHHHH
Q psy11993 477 REMVQLFEKGYGKDPAEIAFRAISHARDMH-IDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQ 555 (630)
Q Consensus 477 ~env~l~~~~~~~d~~~ia~~ai~~a~~~~-~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~Dav~q 555 (630)
.+|+.+.... .....+.++++.+.... .+..+-..|||++++..++++|. .+| .+|++|||+.++|....
T Consensus 94 ~enl~~~~~~---~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qRvalaraL~-----~~p-~llLLDEPts~LD~~~~ 164 (352)
T PRK11144 94 RGNLRYGMAK---SMVAQFDKIVALLGIEPLLDRYPGSLSGGEKQRVAIGRALL-----TAP-ELLLMDEPLASLDLPRK 164 (352)
T ss_pred HHHHHhhhhh---hhHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHH-----cCC-CEEEEcCCcccCCHHHH
Confidence 9999764221 11222334444443322 24446778999999999999999 888 56669999999998765
Q ss_pred HHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 556 LVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 556 l~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
. .+.+.+.++... .+.+.|++|+
T Consensus 165 ~-~l~~~L~~l~~~---~g~tii~vTH 187 (352)
T PRK11144 165 R-ELLPYLERLARE---INIPILYVSH 187 (352)
T ss_pred H-HHHHHHHHHHHh---cCCeEEEEec
Confidence 3 344455544321 2466777776
No 246
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=99.54 E-value=2.7e-14 Score=147.70 Aligned_cols=172 Identities=16% Similarity=0.161 Sum_probs=115.9
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHH-----hcCCeEEEeecccCCcc-HHHHHHHHHhhhcccCC
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLI-----ENNLNVLIAACDTFRAG-AVEQLRTHVRHLCSLHP 470 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~-----~~ggkVlI~~~Dt~R~g-a~eQLr~~~~~l~~~~~ 470 (630)
.+|++++|.+.+| ++++|+||||+||||+++.|++++. +..|+|.+.+.++.+.. ....++....++.+...
T Consensus 24 ~il~~vsl~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~ 101 (264)
T PRK14243 24 LAVKNVWLDIPKN--QITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPVEVRRRIGMVFQKPN 101 (264)
T ss_pred EEeecceEEEcCC--CEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccChHHHhhhEEEEccCCc
Confidence 4789999999999 9999999999999999999999876 26799999887763211 11233444444544333
Q ss_pred CcCCcchhhhHhhhccCCC--CHHHHHHHHHHHhhhc-----CCCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEE
Q psy11993 471 AAKHGGREMVQLFEKGYGK--DPAEIAFRAISHARDM-----HIDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFV 543 (630)
Q Consensus 471 ~~~~tv~env~l~~~~~~~--d~~~ia~~ai~~a~~~-----~~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV 543 (630)
....|+.+|+.+.....+. ...+.+.++++.+... ..+..+.+.||+++++..++++|. .+|+ +|++
T Consensus 102 ~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~laral~-----~~p~-lllL 175 (264)
T PRK14243 102 PFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKDKLKQSGLSLSGGQQQRLCIARAIA-----VQPE-VILM 175 (264)
T ss_pred cccccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHHHHhcCCcccCCHHHHHHHHHHHHHh-----cCCC-EEEE
Confidence 2235899998764321111 1112222333332211 124456778999999999999999 7884 6669
Q ss_pred eccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 544 GEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 544 ~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
|||+.|+|...+. .+.+.+..+.. ..+.|++|+
T Consensus 176 DEPt~~LD~~~~~-~l~~~L~~~~~-----~~tvi~vtH 208 (264)
T PRK14243 176 DEPCSALDPISTL-RIEELMHELKE-----QYTIIIVTH 208 (264)
T ss_pred eCCCccCCHHHHH-HHHHHHHHHhc-----CCEEEEEec
Confidence 9999999987654 45566666543 246677776
No 247
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.54 E-value=1.4e-14 Score=162.92 Aligned_cols=193 Identities=12% Similarity=0.146 Sum_probs=131.7
Q ss_pred hhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccC----CCcC
Q psy11993 398 ILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLH----PAAK 473 (630)
Q Consensus 398 iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~----~~~~ 473 (630)
+|++++|.+.+| ++++|+|||||||||+++.|++.+.++.|+|.+.+.++......+.++....++.+.. .++.
T Consensus 267 ~l~~vsl~i~~G--e~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~ 344 (501)
T PRK10762 267 GVNDVSFTLRKG--EILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANGIVYISEDRKRDGLVLG 344 (501)
T ss_pred CcccceEEEcCC--cEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHHCCCEEecCccccCCCcCC
Confidence 588999999999 9999999999999999999999999999999998877643322233344455555542 2456
Q ss_pred CcchhhhHhhhc-cC----C-CCH---HHHHHHHHHHhhhc--CCCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEE
Q psy11993 474 HGGREMVQLFEK-GY----G-KDP---AEIAFRAISHARDM--HIDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLF 542 (630)
Q Consensus 474 ~tv~env~l~~~-~~----~-~d~---~~ia~~ai~~a~~~--~~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLl 542 (630)
+|+.+|+.+... .. + .+. ...+.++++.+... ..+..+-+.|||++++..++++|. .+| .+|+
T Consensus 345 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqrv~lA~al~-----~~p-~lll 418 (501)
T PRK10762 345 MSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIGLLSGGNQQKVAIARGLM-----TRP-KVLI 418 (501)
T ss_pred CcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCchhhCCHHHHHHHHHHHHHh-----hCC-CEEE
Confidence 899999875321 00 1 111 12234445444432 234556788999999999999998 788 5777
Q ss_pred EeccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcccCCcCccHHHHHHHHHHhCCcEEEEecCCCC
Q psy11993 543 VGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGTGQTY 613 (630)
Q Consensus 543 V~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK~D~~~~~~G~~ls~~~~~g~PI~fvg~Gq~v 613 (630)
+|||+.|+|...+. .+.+.+.++.. .+.+.|++|+ | ...+..+ .--|.++..|+-+
T Consensus 419 LDEPt~~LD~~~~~-~l~~~l~~~~~----~g~tviivtH-d-----~~~~~~~----~d~v~~l~~G~i~ 474 (501)
T PRK10762 419 LDEPTRGVDVGAKK-EIYQLINQFKA----EGLSIILVSS-E-----MPEVLGM----SDRILVMHEGRIS 474 (501)
T ss_pred EcCCCCCCCHhHHH-HHHHHHHHHHH----CCCEEEEEcC-C-----HHHHHhh----CCEEEEEECCEEE
Confidence 99999999988753 44556666643 2567788887 1 2222222 2346667667643
No 248
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.54 E-value=9.4e-15 Score=142.20 Aligned_cols=144 Identities=22% Similarity=0.198 Sum_probs=101.7
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccH-HHHHHHHHhhhcccCC-CcCC
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGA-VEQLRTHVRHLCSLHP-AAKH 474 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga-~eQLr~~~~~l~~~~~-~~~~ 474 (630)
.+|++++|.+.+| ++++|+||||+||||+++.|++.+.+..|+|.+.+.+...... ....+....++.+... ++..
T Consensus 14 ~~l~~i~~~i~~G--~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 91 (178)
T cd03229 14 TVLNDVSLNIEAG--EIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRRIGMVFQDFALFPHL 91 (178)
T ss_pred EEEeeeeEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhcEEEEecCCccCCCC
Confidence 4789999999999 9999999999999999999999999999999998877643220 1122333333333211 2223
Q ss_pred cchhhhHhhhccCCCCHHHHHHHHHHHhhhcCCCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCccHHH
Q psy11993 475 GGREMVQLFEKGYGKDPAEIAFRAISHARDMHIDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVD 554 (630)
Q Consensus 475 tv~env~l~~~~~~~d~~~ia~~ai~~a~~~~~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~Dav~ 554 (630)
|+.+|+.+. .|||++++..++++|. .+| .++++|||+.|+|...
T Consensus 92 t~~~~l~~~------------------------------lS~G~~qr~~la~al~-----~~p-~llilDEP~~~LD~~~ 135 (178)
T cd03229 92 TVLENIALG------------------------------LSGGQQQRVALARALA-----MDP-DVLLLDEPTSALDPIT 135 (178)
T ss_pred CHHHheeec------------------------------CCHHHHHHHHHHHHHH-----CCC-CEEEEeCCcccCCHHH
Confidence 444333221 8999999999999999 788 5666999999999876
Q ss_pred HHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 555 QLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 555 ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
+. .+.+.+.++... .+.+.+++|+
T Consensus 136 ~~-~l~~~l~~~~~~---~~~tiii~sH 159 (178)
T cd03229 136 RR-EVRALLKSLQAQ---LGITVVLVTH 159 (178)
T ss_pred HH-HHHHHHHHHHHh---cCCEEEEEeC
Confidence 54 344455544321 1356677776
No 249
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=99.54 E-value=1.5e-14 Score=168.39 Aligned_cols=166 Identities=20% Similarity=0.175 Sum_probs=129.4
Q ss_pred hhhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccCCCcCCc
Q psy11993 396 VDILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHPAAKHG 475 (630)
Q Consensus 396 ~~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~~~~~t 475 (630)
..+|++++|.+++| +.++|||+|||||||+++.|++++.|+.|+|.+.+.|..... .+.+|....++.+.......|
T Consensus 466 ~~vL~~isl~i~~G--e~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~-~~~lr~~i~~v~Q~~~lf~gT 542 (686)
T TIGR03797 466 PLILDDVSLQIEPG--EFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLD-VQAVRRQLGVVLQNGRLMSGS 542 (686)
T ss_pred ccceeeeEEEECCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCC-HHHHHhccEEEccCCccCccc
Confidence 45899999999999 999999999999999999999999999999999999985544 457888888888888888899
Q ss_pred chhhhHhhhccCCCCHHHHHHHHHHHhhh--------cCCCeeeec----cccchhchHHHHHHHHhhhhhcCCCeEEEE
Q psy11993 476 GREMVQLFEKGYGKDPAEIAFRAISHARD--------MHIDVVLID----TAGRMQDNEPLMRALAKLVKVNQPDLLLFV 543 (630)
Q Consensus 476 v~env~l~~~~~~~d~~~ia~~ai~~a~~--------~~~D~vlID----TaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV 543 (630)
+++|+.+... .+..+ ..++++.+.. .++|..+.+ .|||++|+..++|+|. .+| .++++
T Consensus 543 I~eNi~~~~~---~~~e~-i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARAll-----~~p-~iLiL 612 (686)
T TIGR03797 543 IFENIAGGAP---LTLDE-AWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALV-----RKP-RILLF 612 (686)
T ss_pred HHHHHhcCCC---CCHHH-HHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHh-----cCC-CEEEE
Confidence 9999988643 23332 2233333221 245665543 6999999999999999 788 56679
Q ss_pred eccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 544 GEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 544 ~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
|||++++|...... +.+.+..+ +.+.|++|+
T Consensus 613 DEpTS~LD~~te~~-i~~~L~~~-------~~T~IiItH 643 (686)
T TIGR03797 613 DEATSALDNRTQAI-VSESLERL-------KVTRIVIAH 643 (686)
T ss_pred eCCccCCCHHHHHH-HHHHHHHh-------CCeEEEEec
Confidence 99999999877644 44455433 347788887
No 250
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=99.54 E-value=3.1e-14 Score=147.86 Aligned_cols=172 Identities=19% Similarity=0.140 Sum_probs=118.5
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHh-----cCCeEEEeecccCCcc-HHHHHHHHHhhhcccCC
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIE-----NNLNVLIAACDTFRAG-AVEQLRTHVRHLCSLHP 470 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~-----~ggkVlI~~~Dt~R~g-a~eQLr~~~~~l~~~~~ 470 (630)
.+|++++|.+.+| ++++|+||||+||||+++.|++++.+ ..|+|.+.+.|..+.. ....++....++.+...
T Consensus 39 ~il~~vs~~i~~G--e~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~~~~~~~~i~~v~q~~~ 116 (272)
T PRK14236 39 QALFDISMRIPKN--RVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDVAELRRRVGMVFQRPN 116 (272)
T ss_pred eEeeeEEEEEcCC--CEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccCHHHHhccEEEEecCCc
Confidence 4789999999999 99999999999999999999999873 6899999988875421 12234444555555433
Q ss_pred CcCCcchhhhHhhhccCCC-CHH---HHHHHHHHHhhhc-----CCCeeeeccccchhchHHHHHHHHhhhhhcCCCeEE
Q psy11993 471 AAKHGGREMVQLFEKGYGK-DPA---EIAFRAISHARDM-----HIDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLL 541 (630)
Q Consensus 471 ~~~~tv~env~l~~~~~~~-d~~---~ia~~ai~~a~~~-----~~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VL 541 (630)
....|+.+|+.+.....+. ... ..+.++++.+... ..+......||+++++..++++|. .+| .++
T Consensus 117 l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~-----~~p-~ll 190 (272)
T PRK14236 117 PFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKDRLHENAFGLSGGQQQRLVIARAIA-----IEP-EVL 190 (272)
T ss_pred cCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHHHhhCCcccCCHHHHHHHHHHHHHH-----CCC-CEE
Confidence 2235999999764322221 111 1223333332221 123446678999999999999999 788 566
Q ss_pred EEeccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 542 FVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 542 lV~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
++|||+.|+|...+ ..+.+.+.++.. ..+.|++|+
T Consensus 191 lLDEPt~gLD~~~~-~~l~~~L~~~~~-----~~tiiivtH 225 (272)
T PRK14236 191 LLDEPTSALDPIST-LKIEELITELKS-----KYTIVIVTH 225 (272)
T ss_pred EEeCCcccCCHHHH-HHHHHHHHHHHh-----CCeEEEEeC
Confidence 69999999998765 455666666542 356677776
No 251
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.54 E-value=1.8e-14 Score=149.80 Aligned_cols=178 Identities=22% Similarity=0.198 Sum_probs=118.7
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhc--------CCeEEEeecccCCccHHHHHHHHHhhhccc
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIEN--------NLNVLIAACDTFRAGAVEQLRTHVRHLCSL 468 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~--------ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~ 468 (630)
.+|++++|.+.+| ++++|+||||+||||+++.|++.+.+. .|+|.+.+.+..+... .+++....++.+.
T Consensus 15 ~il~~vsl~i~~G--e~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~-~~~~~~~~~v~q~ 91 (272)
T PRK13547 15 AILRDLSLRIEPG--RVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDA-PRLARLRAVLPQA 91 (272)
T ss_pred eEEecceEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCH-HHHHhhcEEeccc
Confidence 4789999999999 999999999999999999999999887 8999998887643332 2344444555554
Q ss_pred CC-CcCCcchhhhHhhhccC----CC---CHHHHHHHHHHHhhhcC-CCeeeeccccchhchHHHHHHHHhh----hhhc
Q psy11993 469 HP-AAKHGGREMVQLFEKGY----GK---DPAEIAFRAISHARDMH-IDVVLIDTAGRMQDNEPLMRALAKL----VKVN 535 (630)
Q Consensus 469 ~~-~~~~tv~env~l~~~~~----~~---d~~~ia~~ai~~a~~~~-~D~vlIDTaGr~~~~~~L~~aL~kl----~~~~ 535 (630)
.. .+.+|+.+|+.+..... .. .....+..+++.+.... .+..+...||+++++..++++|... -...
T Consensus 92 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~~~~~~~~~ 171 (272)
T PRK13547 92 AQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDVTTLSGGELARVQFARVLAQLWPPHDAAQ 171 (272)
T ss_pred CCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhccccccccCC
Confidence 32 44589999997642111 10 11122334444333221 2344677899999999999999810 0002
Q ss_pred CCCeEEEEeccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 536 QPDLLLFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 536 ~Pd~VLlV~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
+| .+|++|||+.++|...+. .+.+.+.++... .+.+.|++|+
T Consensus 172 ~p-~lllLDEPt~~LD~~~~~-~l~~~l~~~~~~---~~~tviiisH 213 (272)
T PRK13547 172 PP-RYLLLDEPTAALDLAHQH-RLLDTVRRLARD---WNLGVLAIVH 213 (272)
T ss_pred CC-CEEEEcCccccCCHHHHH-HHHHHHHHHHHh---cCCEEEEEEC
Confidence 56 677799999999987653 445556555321 1456677765
No 252
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.54 E-value=2e-14 Score=153.45 Aligned_cols=193 Identities=19% Similarity=0.165 Sum_probs=130.5
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHH-----hcCCeEEEeecccCCcc-HHHHHHHHHhhhcccCC
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLI-----ENNLNVLIAACDTFRAG-AVEQLRTHVRHLCSLHP 470 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~-----~~ggkVlI~~~Dt~R~g-a~eQLr~~~~~l~~~~~ 470 (630)
.+|++++|.+.+| ++++|+|+||+||||++..|++... +..|.|.+.+.|+.... ....++....++.+.+.
T Consensus 96 ~~L~~is~~I~~G--e~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~~~~lr~~i~~v~q~~~ 173 (329)
T PRK14257 96 HVLHDLNLDIKRN--KVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLELRTRIGMVFQKPT 173 (329)
T ss_pred eeeeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHhhhccEEEEecCCc
Confidence 4899999999999 9999999999999999999999875 45899999998874211 12244555566665544
Q ss_pred CcCCcchhhhHhhhccCCCCHHHH----HHHHHHHhhhc-----CCCeeeeccccchhchHHHHHHHHhhhhhcCCCeEE
Q psy11993 471 AAKHGGREMVQLFEKGYGKDPAEI----AFRAISHARDM-----HIDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLL 541 (630)
Q Consensus 471 ~~~~tv~env~l~~~~~~~d~~~i----a~~ai~~a~~~-----~~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VL 541 (630)
....|+++|+.+.....+....+. ...+++.+... ..+.-....|||++++..|+|+|. .+| .+|
T Consensus 174 ~~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~LSgGqkqRl~LARAl~-----~~p-~Il 247 (329)
T PRK14257 174 PFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQRLCIARAIA-----LEP-EVL 247 (329)
T ss_pred cCCCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchhhhhhhCCcccCCHHHHHHHHHHHHHH-----hCC-CEE
Confidence 556899999986432222222221 22333322211 123336678999999999999999 788 566
Q ss_pred EEeccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcccCCcCccHHHHHHHHHHhCCcEEEEecCCCC
Q psy11993 542 FVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGTGQTY 613 (630)
Q Consensus 542 lV~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK~D~~~~~~G~~ls~~~~~g~PI~fvg~Gq~v 613 (630)
++|||+.++|...... +.+.+..+.. ..+.|++|+- .-.+..++ --|.++..|+-+
T Consensus 248 LLDEPts~LD~~~~~~-i~~~i~~l~~-----~~Tii~iTH~------l~~i~~~~----Driivl~~G~i~ 303 (329)
T PRK14257 248 LMDEPTSALDPIATAK-IEELILELKK-----KYSIIIVTHS------MAQAQRIS----DETVFFYQGWIE 303 (329)
T ss_pred EEeCCcccCCHHHHHH-HHHHHHHHhc-----CCEEEEEeCC------HHHHHHhC----CEEEEEECCEEE
Confidence 6999999999876544 6677765542 3677888861 22222222 246677777643
No 253
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.54 E-value=9.8e-15 Score=145.08 Aligned_cols=142 Identities=14% Similarity=0.098 Sum_probs=106.5
Q ss_pred hhhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHH---hcCCeEEEeecccCCccHHHHHHHHHhhhcccC-CC
Q psy11993 396 VDILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLI---ENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLH-PA 471 (630)
Q Consensus 396 ~~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~---~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~-~~ 471 (630)
..+|++++|.+.+| ++++|+||||+||||++..|++.+. +..|.|.+.+.++.+.. ...+....++.+.. .+
T Consensus 20 ~~il~~~s~~i~~G--e~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~--~~~~~~i~~~~q~~~~~ 95 (202)
T cd03233 20 IPILKDFSGVVKPG--EMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFA--EKYPGEIIYVSEEDVHF 95 (202)
T ss_pred ceeeeeEEEEECCC--cEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccch--hhhcceEEEEecccccC
Confidence 45899999999999 9999999999999999999999998 78999999988775432 12233333444332 24
Q ss_pred cCCcchhhhHhhhccCCCCHHHHHHHHHHHhhhcCCCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCcc
Q psy11993 472 AKHGGREMVQLFEKGYGKDPAEIAFRAISHARDMHIDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNE 551 (630)
Q Consensus 472 ~~~tv~env~l~~~~~~~d~~~ia~~ai~~a~~~~~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~D 551 (630)
+.+|+.+|+.+..... .+..+.+.||+++++..++++|. .+| .++++|||+.|+|
T Consensus 96 ~~~tv~~~l~~~~~~~-------------------~~~~~~~LS~Ge~qrl~laral~-----~~p-~llllDEPt~~LD 150 (202)
T cd03233 96 PTLTVRETLDFALRCK-------------------GNEFVRGISGGERKRVSIAEALV-----SRA-SVLCWDNSTRGLD 150 (202)
T ss_pred CCCcHHHHHhhhhhhc-------------------cccchhhCCHHHHHHHHHHHHHh-----hCC-CEEEEcCCCccCC
Confidence 5578888886542110 23446788999999999999999 788 5777999999999
Q ss_pred HHHHHHHHHHHHhhcc
Q psy11993 552 AVDQLVKFNNAMADHS 567 (630)
Q Consensus 552 av~ql~~f~~~l~~~~ 567 (630)
...+. .+.+.+.++.
T Consensus 151 ~~~~~-~~~~~l~~~~ 165 (202)
T cd03233 151 SSTAL-EILKCIRTMA 165 (202)
T ss_pred HHHHH-HHHHHHHHHH
Confidence 87653 4555565554
No 254
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=99.54 E-value=1.3e-14 Score=169.63 Aligned_cols=167 Identities=17% Similarity=0.160 Sum_probs=128.9
Q ss_pred hhhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccCCCcCCc
Q psy11993 396 VDILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHPAAKHG 475 (630)
Q Consensus 396 ~~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~~~~~t 475 (630)
..+|+++++.+++| +.++|||+|||||||+++.|++++.|+.|+|.+.+.|..... .+.+|....++.+.......|
T Consensus 492 ~~vL~~isl~i~~G--e~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~-~~~lr~~i~~v~Q~~~lf~gT 568 (710)
T TIGR03796 492 PPLIENFSLTLQPG--QRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIP-REVLANSVAMVDQDIFLFEGT 568 (710)
T ss_pred CCcccceeEEEcCC--CEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeHHHCC-HHHHHhheeEEecCChhhhcc
Confidence 45899999999999 999999999999999999999999999999999999984443 356788888888887778899
Q ss_pred chhhhHhhhccCCCCHHHHHHHHHHHhh--------hcCCCeeeec----cccchhchHHHHHHHHhhhhhcCCCeEEEE
Q psy11993 476 GREMVQLFEKGYGKDPAEIAFRAISHAR--------DMHIDVVLID----TAGRMQDNEPLMRALAKLVKVNQPDLLLFV 543 (630)
Q Consensus 476 v~env~l~~~~~~~d~~~ia~~ai~~a~--------~~~~D~vlID----TaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV 543 (630)
+++|+.+.... .+..++ .++++.+. -.++|..+.+ .|||+.|+..++|+|. .+| .++++
T Consensus 569 i~eNi~l~~~~--~~~~~i-~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARall-----~~p-~iliL 639 (710)
T TIGR03796 569 VRDNLTLWDPT--IPDADL-VRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALV-----RNP-SILIL 639 (710)
T ss_pred HHHHhhCCCCC--CCHHHH-HHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHHHh-----hCC-CEEEE
Confidence 99999876322 223222 23333221 1256766644 6999999999999999 778 56779
Q ss_pred eccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 544 GEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 544 ~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
|||++++|...... +.+.+.. .+.+.|++|+
T Consensus 640 DEptS~LD~~te~~-i~~~l~~-------~~~T~IiitH 670 (710)
T TIGR03796 640 DEATSALDPETEKI-IDDNLRR-------RGCTCIIVAH 670 (710)
T ss_pred ECccccCCHHHHHH-HHHHHHh-------cCCEEEEEec
Confidence 99999999876543 4444532 2577888887
No 255
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.54 E-value=2.5e-14 Score=148.76 Aligned_cols=172 Identities=17% Similarity=0.105 Sum_probs=116.0
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHh-----cCCeEEEeecccCCcc-HHHHHHHHHhhhcccCC
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIE-----NNLNVLIAACDTFRAG-AVEQLRTHVRHLCSLHP 470 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~-----~ggkVlI~~~Dt~R~g-a~eQLr~~~~~l~~~~~ 470 (630)
.+|++++|.+.+| ++++|+||||+||||+++.|++++.+ ..|+|.+.+.++.... ....++....++.+...
T Consensus 34 ~~l~~vs~~i~~G--e~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~~~~~~~i~~v~q~~~ 111 (274)
T PRK14265 34 LALVDVHLKIPAK--KIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSVKLRRQVGMVFQRPN 111 (274)
T ss_pred EEEeeeeeEEcCC--CEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccchhHHHhhcEEEEccCCc
Confidence 4789999999999 99999999999999999999998863 4799999998875321 12233444455555433
Q ss_pred CcCCcchhhhHhhhccCCCC--HHHHHHHHHHHhhh-----cCCCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEE
Q psy11993 471 AAKHGGREMVQLFEKGYGKD--PAEIAFRAISHARD-----MHIDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFV 543 (630)
Q Consensus 471 ~~~~tv~env~l~~~~~~~d--~~~ia~~ai~~a~~-----~~~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV 543 (630)
....++.+|+.+.....+.. ....+..+++.+.. ...+..+...||+++++..++++|. .+| .+|++
T Consensus 112 l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~-----~~p-~lllL 185 (274)
T PRK14265 112 PFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKDKLKEKGTALSGGQQQRLCIARAIA-----MKP-DVLLM 185 (274)
T ss_pred cccccHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhhHHHhcCCcccCCHHHHHHHHHHHHHh-----hCC-CEEEE
Confidence 33358999987643221111 11122233332221 1123445678999999999999999 788 46669
Q ss_pred eccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 544 GEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 544 ~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
|||+.|+|...+. .+.+.+.++.. ..+.|++|+
T Consensus 186 DEPt~~LD~~~~~-~l~~~L~~~~~-----~~tiii~sH 218 (274)
T PRK14265 186 DEPCSALDPISTR-QVEELCLELKE-----QYTIIMVTH 218 (274)
T ss_pred eCCcccCCHHHHH-HHHHHHHHHhc-----CCEEEEEeC
Confidence 9999999987654 45556666542 346677775
No 256
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.54 E-value=1.5e-13 Score=129.85 Aligned_cols=210 Identities=18% Similarity=0.187 Sum_probs=141.6
Q ss_pred hhhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEee--cccCCccHHHH---HHHHHhhhcc-cC
Q psy11993 396 VDILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAA--CDTFRAGAVEQ---LRTHVRHLCS-LH 469 (630)
Q Consensus 396 ~~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~--~Dt~R~ga~eQ---Lr~~~~~l~~-~~ 469 (630)
..+|-||++.-+.| +.++++||+|+||||+++.|..+-.|..|...|++ .|..+..+..+ ||+-.+++.+ .+
T Consensus 15 ~q~lfdi~l~~~~g--etlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~~~~~k~i~~lr~~vgmvfqqy~ 92 (242)
T COG4161 15 HQALFDITLDCPEG--ETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRDLRRNVGMVFQQYN 92 (242)
T ss_pred chheeeeeecCCCC--CEEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccccccCccHHHHHHHHHhhhhhhhhhc
Confidence 35678899998999 99999999999999999999999889999888775 45544444444 4444444332 33
Q ss_pred CCcCCcchhhhHhhh-ccCCCCHHHH---HHHHHHHhhhcCC-CeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEe
Q psy11993 470 PAAKHGGREMVQLFE-KGYGKDPAEI---AFRAISHARDMHI-DVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVG 544 (630)
Q Consensus 470 ~~~~~tv~env~l~~-~~~~~d~~~i---a~~ai~~a~~~~~-D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~ 544 (630)
.+|.+|+.+|+.-.. +..+....+. +.+.+..++...+ |......+|+++++..++|+|. +.| .||+.|
T Consensus 93 lwphltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~plhlsggqqqrvaiaralm-----mkp-qvllfd 166 (242)
T COG4161 93 LWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYPLHLSGGQQQRVAIARALM-----MEP-QVLLFD 166 (242)
T ss_pred cCchhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccccccccCceecccchhhhHHHHHHHh-----cCC-cEEeec
Confidence 388899999985432 2223322222 3344444444443 6678899999999999999999 999 466689
Q ss_pred ccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcccCCcCccHHHHHHHHHHhCCcEEEEecCCCCc--c---CCCC
Q psy11993 545 EALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGTGQTYT--D---LKSL 619 (630)
Q Consensus 545 E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK~D~~~~~~G~~ls~~~~~g~PI~fvg~Gq~v~--D---L~~~ 619 (630)
||++.+|..-.. ..-..++.++ ..+|+-+|+|+ + + .++..+...+.|...|.-+. | +...
T Consensus 167 eptaaldpeita-qvv~iikel~----~tgitqvivth--e----v----~va~k~as~vvyme~g~ive~g~a~~ft~p 231 (242)
T COG4161 167 EPTAALDPEITA-QIVSIIKELA----ETGITQVIVTH--E----V----EVARKTASRVVYMENGHIVEQGDASCFTEP 231 (242)
T ss_pred CcccccCHHHHH-HHHHHHHHHH----hcCceEEEEEe--e----h----hHHHhhhhheEeeecCeeEeecchhhccCc
Confidence 999999864221 1222333333 34799999997 1 2 33445555799999998775 3 3344
Q ss_pred CHHHHHHHh
Q psy11993 620 NAKAVVNAL 628 (630)
Q Consensus 620 ~~~~~v~~L 628 (630)
..+.|.+.|
T Consensus 232 ~te~f~~yl 240 (242)
T COG4161 232 QTEAFKNYL 240 (242)
T ss_pred cHHHHHHHh
Confidence 455555443
No 257
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.54 E-value=2.7e-14 Score=138.81 Aligned_cols=159 Identities=19% Similarity=0.197 Sum_probs=117.4
Q ss_pred HHHHHcCCCcchhhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhh
Q psy11993 385 ALVQILSPKRRVDILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRH 464 (630)
Q Consensus 385 ~L~~il~~~~~~~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~ 464 (630)
.+++.++. ..+|.++++.+++| .+.+|+||||+||||++.++++++..+.|.|.+.+.|.-..... .|.....+
T Consensus 6 nv~K~y~~---~~vl~~isl~i~~g--~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~-~LAk~lSI 79 (252)
T COG4604 6 NVSKSYGT---KVVLDDVSLDIPKG--GITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSK-ELAKKLSI 79 (252)
T ss_pred hhhHhhCC---EEeeccceeeecCC--ceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCChH-HHHHHHHH
Confidence 44555553 35788999999999 89999999999999999999999999999999999998544433 33333444
Q ss_pred hcc-cCCCcCCcchhhhHhhhccCC-----CCHHHHHHHHHHHhhhcCCCeeeec-cccchhchHHHHHHHHhhhhhcCC
Q psy11993 465 LCS-LHPAAKHGGREMVQLFEKGYG-----KDPAEIAFRAISHARDMHIDVVLID-TAGRMQDNEPLMRALAKLVKVNQP 537 (630)
Q Consensus 465 l~~-~~~~~~~tv~env~l~~~~~~-----~d~~~ia~~ai~~a~~~~~D~vlID-TaGr~~~~~~L~~aL~kl~~~~~P 537 (630)
+.+ .+....+||++.+.|..-.|. .+...+..+|++++...+.....+| +|||+.|+.-++.-|+ ...
T Consensus 80 LkQ~N~i~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l~dryLd~LSGGQrQRAfIAMVla-----QdT 154 (252)
T COG4604 80 LKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDLSDRYLDELSGGQRQRAFIAMVLA-----QDT 154 (252)
T ss_pred HHhhchhhheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccchHHHhHHhcccchhhhhhhheeee-----ccC
Confidence 444 233557899999988654443 2345667888998888776555555 5999988777765555 455
Q ss_pred CeEEEEeccccCccHHHH
Q psy11993 538 DLLLFVGEALVGNEAVDQ 555 (630)
Q Consensus 538 d~VLlV~E~~~g~Dav~q 555 (630)
| .+++|||+..+|....
T Consensus 155 d-yvlLDEPLNNLDmkHs 171 (252)
T COG4604 155 D-YVLLDEPLNNLDMKHS 171 (252)
T ss_pred c-EEEecCcccccchHHH
Confidence 4 5559999999986543
No 258
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.54 E-value=2e-14 Score=141.82 Aligned_cols=162 Identities=17% Similarity=0.098 Sum_probs=112.8
Q ss_pred hhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccC-CCcCCcchhh
Q psy11993 401 DALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLH-PAAKHGGREM 479 (630)
Q Consensus 401 ~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~-~~~~~tv~en 479 (630)
+++|.+.+| ++++|+|+||+||||+++.|++.+.+..|+|.+.+.+..+.. +....++.+.. .++..|+.+|
T Consensus 18 ~vs~~i~~G--e~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~-----~~~~~~~~~~~~~~~~~tv~~~ 90 (195)
T PRK13541 18 DLSITFLPS--AITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIA-----KPYCTYIGHNLGLKLEMTVFEN 90 (195)
T ss_pred EEEEEEcCC--cEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccChhh-----hhhEEeccCCcCCCccCCHHHH
Confidence 489999999 999999999999999999999999999999999988763321 11233343322 2456899999
Q ss_pred hHhhhccCCCCHHHHHHHHHHHhhhcC-CCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCccHHHHHHH
Q psy11993 480 VQLFEKGYGKDPAEIAFRAISHARDMH-IDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQLVK 558 (630)
Q Consensus 480 v~l~~~~~~~d~~~ia~~ai~~a~~~~-~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~Dav~ql~~ 558 (630)
+.+....++. ...+..+++.+.... .+...-+.||+++++..++++|. .+| .++++|||+.|+|...+ ..
T Consensus 91 l~~~~~~~~~--~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rl~la~al~-----~~p-~~lllDEP~~~LD~~~~-~~ 161 (195)
T PRK13541 91 LKFWSEIYNS--AETLYAAIHYFKLHDLLDEKCYSLSSGMQKIVAIARLIA-----CQS-DLWLLDEVETNLSKENR-DL 161 (195)
T ss_pred HHHHHHhccc--HHHHHHHHHHcCCHhhhccChhhCCHHHHHHHHHHHHHh-----cCC-CEEEEeCCcccCCHHHH-HH
Confidence 9775433321 122333333332211 23346678999999999999999 788 56779999999998764 44
Q ss_pred HHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 559 FNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 559 f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
+.+.+..... .+.+.+++|+
T Consensus 162 l~~~l~~~~~----~~~tiii~sh 181 (195)
T PRK13541 162 LNNLIVMKAN----SGGIVLLSSH 181 (195)
T ss_pred HHHHHHHHHh----CCCEEEEEeC
Confidence 5555543322 2466777776
No 259
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.53 E-value=2.1e-14 Score=161.30 Aligned_cols=173 Identities=15% Similarity=0.075 Sum_probs=119.3
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHh--cCCeEEEeecccCCccHHHHHHHHHhhhcccCC-CcC
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIE--NNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHP-AAK 473 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~--~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~-~~~ 473 (630)
.+|++++|.+.+| ++++|+|||||||||+++.|++.+.+ ..|+|.+.+.++.+....+..+....++.+... ++.
T Consensus 15 ~il~~isl~i~~G--e~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 92 (500)
T TIGR02633 15 KALDGIDLEVRPG--ECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERAGIVIIHQELTLVPE 92 (500)
T ss_pred EeecceEEEEeCC--cEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhCCEEEEeeccccCCC
Confidence 4789999999999 99999999999999999999998876 689999988877443322222223344444332 456
Q ss_pred CcchhhhHhhhccC--C--CCHHH---HHHHHHHHhhhcCC--CeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEe
Q psy11993 474 HGGREMVQLFEKGY--G--KDPAE---IAFRAISHARDMHI--DVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVG 544 (630)
Q Consensus 474 ~tv~env~l~~~~~--~--~d~~~---ia~~ai~~a~~~~~--D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~ 544 (630)
+|+.+|+.+....+ + .+... .+.++++.+..... +..+-+.|||++++..++++|. .+| .+|++|
T Consensus 93 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iA~al~-----~~p-~lllLD 166 (500)
T TIGR02633 93 LSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIAKALN-----KQA-RLLILD 166 (500)
T ss_pred CcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCchhhCCHHHHHHHHHHHHHh-----hCC-CEEEEe
Confidence 89999987643211 1 12222 23334444333221 2335678999999999999999 788 567799
Q ss_pred ccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 545 EALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 545 E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
||++|+|..... .+.+.+.++.. .+.+.|++|+
T Consensus 167 EPt~~LD~~~~~-~l~~~l~~l~~----~g~tviiitH 199 (500)
T TIGR02633 167 EPSSSLTEKETE-ILLDIIRDLKA----HGVACVYISH 199 (500)
T ss_pred CCCCCCCHHHHH-HHHHHHHHHHh----CCCEEEEEeC
Confidence 999999987654 34445555532 2567788887
No 260
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.53 E-value=1.1e-13 Score=150.36 Aligned_cols=213 Identities=14% Similarity=0.092 Sum_probs=154.9
Q ss_pred chhhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccCC-CcC
Q psy11993 395 RVDILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHP-AAK 473 (630)
Q Consensus 395 ~~~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~-~~~ 473 (630)
.+-++++|+|.+.+| ++.+|+|.||+|||||+++|.+++.|+.|+|.+.+..+.=.+..+.++.-..++.|-+. ++.
T Consensus 16 ~~~And~V~l~v~~G--eIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~GIGMVhQHF~Lv~~ 93 (501)
T COG3845 16 GVVANDDVSLSVKKG--EIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLGIGMVHQHFMLVPT 93 (501)
T ss_pred CEEecCceeeeecCC--cEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHHHcCCcEEeeccccccc
Confidence 356888999999999 99999999999999999999999999999999999877444455565655555555444 778
Q ss_pred CcchhhhHhhhcc---CCCCHHHHHHHHHHHhhhc----CCCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEecc
Q psy11993 474 HGGREMVQLFEKG---YGKDPAEIAFRAISHARDM----HIDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEA 546 (630)
Q Consensus 474 ~tv~env~l~~~~---~~~d~~~ia~~ai~~a~~~----~~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~ 546 (630)
+|+.||+.+.... ...+......++.+..... ++|..+-|.|-+++|+..++++|. .+|+ +|++|||
T Consensus 94 lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLsVG~qQRVEIlKaLy-----r~a~-iLILDEP 167 (501)
T COG3845 94 LTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVADLSVGEQQRVEILKALY-----RGAR-LLILDEP 167 (501)
T ss_pred cchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceeecCCcchhHHHHHHHHHh-----cCCC-EEEEcCC
Confidence 9999999886532 1234444444443333333 346778899999999999999999 7774 5558999
Q ss_pred ccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcccCCcCccHHHHHHHHHHhCCcEEEEecCCCCc--c-CCCCCHHH
Q psy11993 547 LVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGTGQTYT--D-LKSLNAKA 623 (630)
Q Consensus 547 ~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK~D~~~~~~G~~ls~~~~~g~PI~fvg~Gq~v~--D-L~~~~~~~ 623 (630)
|+-+...+ +..|-+.++++... +.+.|++|+ +...+..++. .+.-+--|.-+. | ....+++.
T Consensus 168 TaVLTP~E-~~~lf~~l~~l~~~----G~tIi~ITH------KL~Ev~~iaD----rvTVLR~Gkvvgt~~~~~~~t~~e 232 (501)
T COG3845 168 TAVLTPQE-ADELFEILRRLAAE----GKTIIFITH------KLKEVMAIAD----RVTVLRRGKVVGTVDPVAETTEEE 232 (501)
T ss_pred cccCCHHH-HHHHHHHHHHHHHC----CCEEEEEec------cHHHHHHhhC----eeEEEeCCeEEeeecCCCCCCHHH
Confidence 98876554 44555567666543 677788875 4444555555 366666665443 3 66778899
Q ss_pred HHHHhhC
Q psy11993 624 VVNALMK 630 (630)
Q Consensus 624 ~v~~Ll~ 630 (630)
++++|++
T Consensus 233 la~lMvG 239 (501)
T COG3845 233 LAELMVG 239 (501)
T ss_pred HHHHhcC
Confidence 9888763
No 261
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=99.53 E-value=1.8e-14 Score=148.30 Aligned_cols=174 Identities=19% Similarity=0.155 Sum_probs=116.2
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecc-----cCCccHHHH---HHHHHhhhccc
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACD-----TFRAGAVEQ---LRTHVRHLCSL 468 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~D-----t~R~ga~eQ---Lr~~~~~l~~~ 468 (630)
.+|++++|.+.+| ++++|+||||+||||+++.|++.+.+..|+|.+.+.+ +.+...... .+....++.+.
T Consensus 20 ~il~~is~~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~~~~~~~~~i~~v~q~ 97 (258)
T PRK11701 20 KGCRDVSFDLYPG--EVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAERRRLLRTEWGFVHQH 97 (258)
T ss_pred eeeeeeeEEEeCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHHHHHHhhcceEEEeeC
Confidence 4789999999999 9999999999999999999999999999999999887 544332211 12234444443
Q ss_pred C---CCcCCcchhhhHhhhccCC-CCH---HHHHHHHHHHhhhc--CCCeeeeccccchhchHHHHHHHHhhhhhcCCCe
Q psy11993 469 H---PAAKHGGREMVQLFEKGYG-KDP---AEIAFRAISHARDM--HIDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDL 539 (630)
Q Consensus 469 ~---~~~~~tv~env~l~~~~~~-~d~---~~ia~~ai~~a~~~--~~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~ 539 (630)
. ..+.+++.+|+........ .+. ...+.++++.+... ..+..+...|||++++..++++|. .+| .
T Consensus 98 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~Gq~qrl~laral~-----~~p-~ 171 (258)
T PRK11701 98 PRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDAARIDDLPTTFSGGMQQRLQIARNLV-----THP-R 171 (258)
T ss_pred cccccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCChhHHhCCCccCCHHHHHHHHHHHHHh-----cCC-C
Confidence 2 1334567777753211111 111 12223334333332 123446778999999999999999 788 6
Q ss_pred EEEEeccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 540 LLFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 540 VLlV~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
+|++|||+.++|...+ ..+.+.+..+.. ..+.+.|++|+
T Consensus 172 llllDEPt~~LD~~~~-~~l~~~l~~~~~---~~~~tii~isH 210 (258)
T PRK11701 172 LVFMDEPTGGLDVSVQ-ARLLDLLRGLVR---ELGLAVVIVTH 210 (258)
T ss_pred EEEEcCCcccCCHHHH-HHHHHHHHHHHH---hcCcEEEEEeC
Confidence 7779999999998765 344455554432 12567788887
No 262
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.53 E-value=4.2e-14 Score=134.37 Aligned_cols=176 Identities=15% Similarity=0.129 Sum_probs=129.6
Q ss_pred chhhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccCCCcCC
Q psy11993 395 RVDILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHPAAKH 474 (630)
Q Consensus 395 ~~~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~~~~~ 474 (630)
...+|++++|.+.+| +.++|+||+||||||+++.+|.+..++.|.+++-+.|..-. ..+.+|..+.++-+.+.....
T Consensus 15 ~a~il~~isl~v~~G--e~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~-~pea~Rq~VsY~~Q~paLfg~ 91 (223)
T COG4619 15 DAKILNNISLSVRAG--EFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTL-KPEAYRQQVSYCAQTPALFGD 91 (223)
T ss_pred CCeeecceeeeecCC--ceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCcccccc-ChHHHHHHHHHHHcCcccccc
Confidence 345889999999999 99999999999999999999999999999999999887433 356677777777776666678
Q ss_pred cchhhhHhhhccC--CCCHHHHHHHHHHHhhhcC--CCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCc
Q psy11993 475 GGREMVQLFEKGY--GKDPAEIAFRAISHARDMH--IDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGN 550 (630)
Q Consensus 475 tv~env~l~~~~~--~~d~~~ia~~ai~~a~~~~--~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~ 550 (630)
|+.+|+.|..... ..|+.. +.+.+..+.... ++.-+-+.|||..++..|+|.|. .-| .||++||+++.+
T Consensus 92 tVeDNlifP~~~r~rr~dr~a-a~~llar~~l~~~~L~k~it~lSGGE~QriAliR~Lq-----~~P-~ILLLDE~TsAL 164 (223)
T COG4619 92 TVEDNLIFPWQIRNRRPDRAA-ALDLLARFALPDSILTKNITELSGGEKQRIALIRNLQ-----FMP-KILLLDEITSAL 164 (223)
T ss_pred chhhccccchHHhccCCChHH-HHHHHHHcCCchhhhcchhhhccchHHHHHHHHHHhh-----cCC-ceEEecCchhhc
Confidence 9999998754332 234322 233333332221 23447788999999999999998 778 677799999999
Q ss_pred cHHHHHHHHHHHHhhcccCCCCCCeeEEEEcccC
Q psy11993 551 EAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFD 584 (630)
Q Consensus 551 Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK~D 584 (630)
|.-+. +..+..+-.|.. +..+..+-+|+-+
T Consensus 165 D~~nk-r~ie~mi~~~v~---~q~vAv~WiTHd~ 194 (223)
T COG4619 165 DESNK-RNIEEMIHRYVR---EQNVAVLWITHDK 194 (223)
T ss_pred ChhhH-HHHHHHHHHHhh---hhceEEEEEecCh
Confidence 87654 445555544432 3456677778733
No 263
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.53 E-value=3.9e-14 Score=145.06 Aligned_cols=172 Identities=21% Similarity=0.153 Sum_probs=116.4
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHH-----hcCCeEEEeecccCCcc-HHHHHHHHHhhhcccCC
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLI-----ENNLNVLIAACDTFRAG-AVEQLRTHVRHLCSLHP 470 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~-----~~ggkVlI~~~Dt~R~g-a~eQLr~~~~~l~~~~~ 470 (630)
.+|++++|.+.+| ++++|+|+||+||||+++.|++.+. +..|+|.+.+.++.... ....++....++.+...
T Consensus 19 ~~l~~is~~i~~G--e~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~ 96 (251)
T PRK14244 19 QILFDINLDIYKR--EVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLLRAKVGMVFQKPN 96 (251)
T ss_pred eeeeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHHHhhhEEEEecCcc
Confidence 4789999999999 9999999999999999999999976 35899999887653221 11234555555655433
Q ss_pred CcCCcchhhhHhhhccCCC--CHHH---HHHHHHHHhhhcC-----CCeeeeccccchhchHHHHHHHHhhhhhcCCCeE
Q psy11993 471 AAKHGGREMVQLFEKGYGK--DPAE---IAFRAISHARDMH-----IDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLL 540 (630)
Q Consensus 471 ~~~~tv~env~l~~~~~~~--d~~~---ia~~ai~~a~~~~-----~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~V 540 (630)
....++.+|+.+.....+. +... .+..+++.+.... .+.-....||+++++..++++|. .+| .+
T Consensus 97 ~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~-----~~p-~l 170 (251)
T PRK14244 97 PFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQRLCIARAIA-----VKP-TM 170 (251)
T ss_pred cccCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhhCCHHHHHHHHHHHHHh-----cCC-CE
Confidence 3335899998764322221 1111 1223333332211 12235578999999999999999 788 56
Q ss_pred EEEeccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 541 LFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 541 LlV~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
|++|||+.|+|...+ ..+.+.+.++.. +.+.|++|+
T Consensus 171 lllDEPt~~LD~~~~-~~l~~~l~~~~~-----~~tiiiisH 206 (251)
T PRK14244 171 LLMDEPCSALDPVAT-NVIENLIQELKK-----NFTIIVVTH 206 (251)
T ss_pred EEEeCCCccCCHHHH-HHHHHHHHHHhc-----CCeEEEEeC
Confidence 669999999998765 345566665532 467788886
No 264
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.53 E-value=1.7e-14 Score=146.06 Aligned_cols=168 Identities=18% Similarity=0.166 Sum_probs=115.6
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccCCCcCCcc
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHPAAKHGG 476 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~~~~~tv 476 (630)
.+|++++|.+.+| ++++|+||||+||||+++.|++.+.+..|+|.+.+.++.+.. ...++....++.+.......|+
T Consensus 15 ~~l~~i~~~i~~G--e~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~-~~~~~~~i~~~~q~~~~~~~tv 91 (236)
T cd03253 15 PVLKDVSFTIPAG--KKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVT-LDSLRRAIGVVPQDTVLFNDTI 91 (236)
T ss_pred ceeeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCC-HHHHHhhEEEECCCChhhcchH
Confidence 3788999999999 999999999999999999999999999999999887764432 2233444455554444445799
Q ss_pred hhhhHhhhccCCCCHHHHHHHHHHH------hhhc--CCC----eeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEe
Q psy11993 477 REMVQLFEKGYGKDPAEIAFRAISH------ARDM--HID----VVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVG 544 (630)
Q Consensus 477 ~env~l~~~~~~~d~~~ia~~ai~~------a~~~--~~D----~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~ 544 (630)
.+|+.+..... ..... ..++.. +... +++ ..+...||+++++..++++|. .+| .++++|
T Consensus 92 ~~nl~~~~~~~--~~~~~-~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~-----~~p-~llllD 162 (236)
T cd03253 92 GYNIRYGRPDA--TDEEV-IEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAIL-----KNP-PILLLD 162 (236)
T ss_pred HHHHhhcCCCC--CHHHH-HHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHh-----cCC-CEEEEe
Confidence 99987653211 11111 111111 1110 111 124578999999999999999 888 566699
Q ss_pred ccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 545 EALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 545 E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
||+.|+|...+ ..+.+.+.++.. +.+.|++|+
T Consensus 163 EP~~~LD~~~~-~~l~~~l~~~~~-----~~tiii~sh 194 (236)
T cd03253 163 EATSALDTHTE-REIQAALRDVSK-----GRTTIVIAH 194 (236)
T ss_pred CCcccCCHHHH-HHHHHHHHHhcC-----CCEEEEEcC
Confidence 99999998765 345556655532 456777776
No 265
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.53 E-value=3.6e-14 Score=146.39 Aligned_cols=174 Identities=21% Similarity=0.174 Sum_probs=116.9
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhc-----CCeEEEeecccCCc-cHHHHHHHHHhhhcccCC
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIEN-----NLNVLIAACDTFRA-GAVEQLRTHVRHLCSLHP 470 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~-----ggkVlI~~~Dt~R~-ga~eQLr~~~~~l~~~~~ 470 (630)
.+|++++|.+.+| ++++|+|+||+||||+++.|++.+.+. .|+|.+.+.|+... .....++....++.+...
T Consensus 21 ~il~~is~~i~~G--e~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~ 98 (261)
T PRK14258 21 KILEGVSMEIYQS--KVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNLNRLRRQVSMVHPKPN 98 (261)
T ss_pred eEeeceEEEEcCC--cEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccchHHhhccEEEEecCCc
Confidence 4789999999999 999999999999999999999999874 68999988775311 111233444444444333
Q ss_pred CcCCcchhhhHhhhccCCC-CH---HHHHHHHHHHhhhcC-----CCeeeeccccchhchHHHHHHHHhhhhhcCCCeEE
Q psy11993 471 AAKHGGREMVQLFEKGYGK-DP---AEIAFRAISHARDMH-----IDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLL 541 (630)
Q Consensus 471 ~~~~tv~env~l~~~~~~~-d~---~~ia~~ai~~a~~~~-----~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VL 541 (630)
...+|+.+|+.+.....+. .. ...+.++++.+...+ .+..+...||+++++..++++|. .+| .++
T Consensus 99 l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~-----~~p-~vl 172 (261)
T PRK14258 99 LFPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHKIHKSALDLSGGQQQRLCIARALA-----VKP-KVL 172 (261)
T ss_pred cCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHHh-----cCC-CEE
Confidence 3337999999764322221 11 122333333332211 23445678999999999999999 788 566
Q ss_pred EEeccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 542 FVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 542 lV~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
++|||+.++|...+. .+.+.+..+... .+.+.|++|+
T Consensus 173 lLDEP~~~LD~~~~~-~l~~~l~~l~~~---~~~tiiivsH 209 (261)
T PRK14258 173 LMDEPCFGLDPIASM-KVESLIQSLRLR---SELTMVIVSH 209 (261)
T ss_pred EEeCCCccCCHHHHH-HHHHHHHHHHHh---CCCEEEEEEC
Confidence 699999999987653 444555544321 1466778776
No 266
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.53 E-value=4e-14 Score=149.58 Aligned_cols=172 Identities=20% Similarity=0.211 Sum_probs=117.5
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHH-----hcCCeEEEeecccCCcc-HHHHHHHHHhhhcccCC
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLI-----ENNLNVLIAACDTFRAG-AVEQLRTHVRHLCSLHP 470 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~-----~~ggkVlI~~~Dt~R~g-a~eQLr~~~~~l~~~~~ 470 (630)
.+|++++|.+.+| ++++|+|+||+||||+++.|++.+. +..|+|.+.+.++.+.. ....++....++.+...
T Consensus 59 ~iL~~is~~i~~G--e~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~~~~~~~~i~~v~q~~~ 136 (305)
T PRK14264 59 HALKGVSMDIPEK--SVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVNLVELRKRVGMVFQSPN 136 (305)
T ss_pred eeeeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccccHHHHhhceEEEccCCc
Confidence 3788899999999 9999999999999999999999886 57899999988875422 12234444555555433
Q ss_pred CcCCcchhhhHhhhccC------------CCCH----HHHHHHHHHHhhhc-----CCCeeeeccccchhchHHHHHHHH
Q psy11993 471 AAKHGGREMVQLFEKGY------------GKDP----AEIAFRAISHARDM-----HIDVVLIDTAGRMQDNEPLMRALA 529 (630)
Q Consensus 471 ~~~~tv~env~l~~~~~------------~~d~----~~ia~~ai~~a~~~-----~~D~vlIDTaGr~~~~~~L~~aL~ 529 (630)
+...|+.+|+.+..... +... ...+..+++.+... ..+.-+...||+++++..++++|.
T Consensus 137 l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~LAraL~ 216 (305)
T PRK14264 137 PFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRLDDNALGLSGGQQQRLCIARCLA 216 (305)
T ss_pred cccccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHHhcCccccCCHHHHHHHHHHHHHh
Confidence 33469999997643211 1111 11222333322210 113335678999999999999999
Q ss_pred hhhhhcCCCeEEEEeccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 530 KLVKVNQPDLLLFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 530 kl~~~~~Pd~VLlV~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
.+| .+|++|||+.|+|...+. .+.+.+.++.. ..+.||+|+
T Consensus 217 -----~~p-~lLLLDEPtsgLD~~~~~-~l~~~L~~~~~-----~~tiiivtH 257 (305)
T PRK14264 217 -----VDP-EVILMDEPASALDPIATS-KIEDLIEELAE-----EYTVVVVTH 257 (305)
T ss_pred -----cCC-CEEEEeCCcccCCHHHHH-HHHHHHHHHhc-----CCEEEEEEc
Confidence 788 567799999999987654 45566666643 246677776
No 267
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=99.53 E-value=1.7e-14 Score=163.05 Aligned_cols=168 Identities=18% Similarity=0.158 Sum_probs=128.5
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccCCCcCCcc
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHPAAKHGG 476 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~~~~~tv 476 (630)
.+|+++++.+++| +.++|+||||+||||+++.|++++.|+.|+|.+.+.|..... .+.+|.+..++.+.+.....|+
T Consensus 336 ~il~~i~l~i~~G--~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~-~~~lr~~i~~v~Q~~~lf~~ti 412 (529)
T TIGR02857 336 PALRPVSFTVPPG--ERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADAD-ADSWRDQIAWVPQHPFLFAGTI 412 (529)
T ss_pred ccccceeEEECCC--CEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCC-HHHHHhheEEEcCCCcccCcCH
Confidence 5899999999999 999999999999999999999999999999999999885544 3567888888888777778999
Q ss_pred hhhhHhhhccCCCCHHHHHHHHHHHhhh--------cCCCeee----eccccchhchHHHHHHHHhhhhhcCCCeEEEEe
Q psy11993 477 REMVQLFEKGYGKDPAEIAFRAISHARD--------MHIDVVL----IDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVG 544 (630)
Q Consensus 477 ~env~l~~~~~~~d~~~ia~~ai~~a~~--------~~~D~vl----IDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~ 544 (630)
++|+.+..... +..+ ..++++.+.. .++|..+ ...|||++|+..++|+|. .+| .++++|
T Consensus 413 ~~Ni~~~~~~~--~~~~-i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~-----~~~-~ililD 483 (529)
T TIGR02857 413 AENIRLARPDA--SDAE-IRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFL-----RDA-PLLLLD 483 (529)
T ss_pred HHHHhccCCCC--CHHH-HHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHh-----cCC-CEEEEe
Confidence 99998754221 2222 2233333221 2456554 346999999999999999 778 566799
Q ss_pred ccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 545 EALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 545 E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
||++++|...... +.+.+.++. .+.+.|++|+
T Consensus 484 E~ts~lD~~~~~~-i~~~l~~~~-----~~~t~i~itH 515 (529)
T TIGR02857 484 EPTAHLDAETEAL-VTEALRALA-----QGRTVLLVTH 515 (529)
T ss_pred CcccccCHHHHHH-HHHHHHHhc-----CCCEEEEEec
Confidence 9999999887654 445555443 2567888887
No 268
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.53 E-value=3.1e-14 Score=146.02 Aligned_cols=172 Identities=19% Similarity=0.158 Sum_probs=116.8
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHH--h---cCCeEEEeecccCCcc-HHHHHHHHHhhhcccCC
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLI--E---NNLNVLIAACDTFRAG-AVEQLRTHVRHLCSLHP 470 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~--~---~ggkVlI~~~Dt~R~g-a~eQLr~~~~~l~~~~~ 470 (630)
.+|++++|.+.+| ++++|+||||+||||+++.|++.+. + ..|+|.+.+.+..+.. ....++....++.+...
T Consensus 20 ~~l~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~ 97 (253)
T PRK14261 20 HALYDITISIPKN--RVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVVALRRKIGMVFQRPN 97 (253)
T ss_pred eeeeeeEEEECCC--cEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccchhhhhceEEEEecCCc
Confidence 4789999999999 9999999999999999999999865 2 3799999888764421 12233444455555433
Q ss_pred CcCCcchhhhHhhhccCCC-CHHH---HHHHHHHHhhhc-----CCCeeeeccccchhchHHHHHHHHhhhhhcCCCeEE
Q psy11993 471 AAKHGGREMVQLFEKGYGK-DPAE---IAFRAISHARDM-----HIDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLL 541 (630)
Q Consensus 471 ~~~~tv~env~l~~~~~~~-d~~~---ia~~ai~~a~~~-----~~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VL 541 (630)
....|+.+|+.+.....+. +... .+.++++.+... ..+..+...||+++++..++++|. .+| .++
T Consensus 98 ~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~-----~~p-~ll 171 (253)
T PRK14261 98 PFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKDRLHDSALSLSGGQQQRLCIARTLA-----VNP-EVI 171 (253)
T ss_pred cCcccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhHHHhhcChhhCCHHHHHHHHHHHHHh-----cCC-CEE
Confidence 3336999999865432221 1111 122333322211 123446678999999999999999 788 566
Q ss_pred EEeccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 542 FVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 542 lV~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
++|||+.|+|...+. .+.+.+..+.. ..+.|++|+
T Consensus 172 lLDEP~~gLD~~~~~-~l~~~l~~~~~-----~~tvii~sh 206 (253)
T PRK14261 172 LMDEPCSALDPIATA-KIEDLIEDLKK-----EYTVIIVTH 206 (253)
T ss_pred EEeCCcccCCHHHHH-HHHHHHHHHhh-----CceEEEEEc
Confidence 699999999987653 44556665542 356777776
No 269
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=99.53 E-value=2.5e-14 Score=167.22 Aligned_cols=167 Identities=18% Similarity=0.123 Sum_probs=126.5
Q ss_pred hhhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccCCCcCCc
Q psy11993 396 VDILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHPAAKHG 475 (630)
Q Consensus 396 ~~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~~~~~t 475 (630)
..+|++++|.+++| +.++||||||+||||+++.|++++.|++|+|.+.+.|..... ...++....+++|.+.....|
T Consensus 494 ~~vL~~isl~i~~G--e~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~-~~~lr~~i~~v~Q~~~lF~gT 570 (711)
T TIGR00958 494 VPVLKGLTFTLHPG--EVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYD-HHYLHRQVALVGQEPVLFSGS 570 (711)
T ss_pred CccccCceEEEcCC--CEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcC-HHHHHhhceEEecCccccccC
Confidence 35899999999999 999999999999999999999999999999999998874433 456788888888888888899
Q ss_pred chhhhHhhhccCCCCHHHHHHHHHHHhhh--------cCCCeeeec----cccchhchHHHHHHHHhhhhhcCCCeEEEE
Q psy11993 476 GREMVQLFEKGYGKDPAEIAFRAISHARD--------MHIDVVLID----TAGRMQDNEPLMRALAKLVKVNQPDLLLFV 543 (630)
Q Consensus 476 v~env~l~~~~~~~d~~~ia~~ai~~a~~--------~~~D~vlID----TaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV 543 (630)
+++|+.+..... +.. ...++++.+.. .++|..+.+ .|||++|+..++|+|. .+| .++++
T Consensus 571 IreNI~~g~~~~--~~e-~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalARALl-----~~p-~ILIL 641 (711)
T TIGR00958 571 VRENIAYGLTDT--PDE-EIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALV-----RKP-RVLIL 641 (711)
T ss_pred HHHHHhcCCCCC--CHH-HHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHHHHHh-----cCC-CEEEE
Confidence 999998754322 222 22334333221 246665543 6999999999999999 777 57779
Q ss_pred eccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 544 GEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 544 ~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
|||++++|....... .+ .. ...+.+.|++|+
T Consensus 642 DEpTSaLD~~te~~i-~~-~~------~~~~~TvIiItH 672 (711)
T TIGR00958 642 DEATSALDAECEQLL-QE-SR------SRASRTVLLIAH 672 (711)
T ss_pred EccccccCHHHHHHH-HH-hh------ccCCCeEEEEec
Confidence 999999998654332 22 11 113568888887
No 270
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=99.53 E-value=2.1e-14 Score=144.66 Aligned_cols=171 Identities=19% Similarity=0.132 Sum_probs=115.3
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccCCCcCCcc
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHPAAKHGG 476 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~~~~~tv 476 (630)
.+|++++|.+.+| ++++|+||||+||||++..|++.+.+..|+|.+.+.++.+.. ....+....++.+.......|+
T Consensus 28 ~~l~~is~~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-~~~~~~~i~~~~q~~~l~~~tv 104 (226)
T cd03248 28 LVLQDVSFTLHPG--EVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYE-HKYLHSKVSLVGQEPVLFARSL 104 (226)
T ss_pred ccccceEEEEcCC--CEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcC-HHHHHhhEEEEecccHHHhhhH
Confidence 4899999999999 999999999999999999999999999999999887764322 2233334444444333334688
Q ss_pred hhhhHhhhccCCCCH-HHH-----HHHHHHHhh--hcC-CCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccc
Q psy11993 477 REMVQLFEKGYGKDP-AEI-----AFRAISHAR--DMH-IDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEAL 547 (630)
Q Consensus 477 ~env~l~~~~~~~d~-~~i-----a~~ai~~a~--~~~-~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~ 547 (630)
.+|+.+......... ... +...++.+. ... .+..+...||+++++..++++|. .+| .++++|||+
T Consensus 105 ~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~-----~~p-~llllDEPt 178 (226)
T cd03248 105 QDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALI-----RNP-QVLILDEAT 178 (226)
T ss_pred HHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHh-----cCC-CEEEEeCCc
Confidence 888865322111100 000 112222221 111 13335667999999999999999 888 566699999
Q ss_pred cCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 548 VGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 548 ~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
.++|...+ ..+.+.+.++.. ..+.|++|+
T Consensus 179 ~~LD~~~~-~~l~~~l~~~~~-----~~tii~~sh 207 (226)
T cd03248 179 SALDAESE-QQVQQALYDWPE-----RRTVLVIAH 207 (226)
T ss_pred ccCCHHHH-HHHHHHHHHHcC-----CCEEEEEEC
Confidence 99998775 455566665542 356677776
No 271
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.53 E-value=1.5e-14 Score=165.16 Aligned_cols=168 Identities=18% Similarity=0.165 Sum_probs=128.7
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccCCCcCCcc
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHPAAKHGG 476 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~~~~~tv 476 (630)
.+|++++|.+++| +.++|+||||+||||+++.|++++.|+.|+|.+.+.|..... .+.+|....++.+.......|+
T Consensus 354 ~il~~i~~~i~~G--~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~i~~~~-~~~~r~~i~~v~Q~~~lf~~ti 430 (574)
T PRK11160 354 PVLKGLSLQIKAG--EKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYS-EAALRQAISVVSQRVHLFSATL 430 (574)
T ss_pred cceecceEEECCC--CEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCC-HHHHHhheeEEcccchhhcccH
Confidence 5899999999999 999999999999999999999999999999999999874443 4577888888888777778899
Q ss_pred hhhhHhhhccCCCCHHHHHHHHHHHhh-------hcCCCeeeec----cccchhchHHHHHHHHhhhhhcCCCeEEEEec
Q psy11993 477 REMVQLFEKGYGKDPAEIAFRAISHAR-------DMHIDVVLID----TAGRMQDNEPLMRALAKLVKVNQPDLLLFVGE 545 (630)
Q Consensus 477 ~env~l~~~~~~~d~~~ia~~ai~~a~-------~~~~D~vlID----TaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E 545 (630)
++|+.+... ..+..+ ..++++.+. -.++|..+.+ .|||+.++..++|+|. .+| .++++||
T Consensus 431 ~~Ni~~~~~--~~~~~~-i~~al~~~~l~~~i~~p~GldT~vge~g~~LSgGqrqRialARall-----~~~-~ililDE 501 (574)
T PRK11160 431 RDNLLLAAP--NASDEA-LIEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRRLGIARALL-----HDA-PLLLLDE 501 (574)
T ss_pred HHHhhcCCC--ccCHHH-HHHHHHHcCCHHHHcCccccCchhcCCCCCCCHHHHHHHHHHHHHh-----cCC-CEEEEeC
Confidence 999987542 122222 233333332 2345655433 6999999999999999 778 5667999
Q ss_pred cccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 546 ALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 546 ~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
|++++|..... .+.+.+.++.. +.+.|++|+
T Consensus 502 ~ts~lD~~t~~-~i~~~l~~~~~-----~~tviiitH 532 (574)
T PRK11160 502 PTEGLDAETER-QILELLAEHAQ-----NKTVLMITH 532 (574)
T ss_pred CcccCCHHHHH-HHHHHHHHHcC-----CCEEEEEec
Confidence 99999987754 45556655432 467788887
No 272
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=99.53 E-value=2e-14 Score=141.99 Aligned_cols=145 Identities=19% Similarity=0.174 Sum_probs=107.5
Q ss_pred hhhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHH--HhcCCeEEEeecccCCccHHHHHHHHHhhhcccCC-Cc
Q psy11993 396 VDILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWL--IENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHP-AA 472 (630)
Q Consensus 396 ~~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l--~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~-~~ 472 (630)
..+|++++|.+.+| ++++|+||||+||||++..|++.+ .+..|+|.+.+.++.. .+.+....++.+... ++
T Consensus 22 ~~~l~~~~~~i~~G--e~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~----~~~~~~i~~~~q~~~~~~ 95 (194)
T cd03213 22 KQLLKNVSGKAKPG--ELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDK----RSFRKIIGYVPQDDILHP 95 (194)
T ss_pred ccceecceEEEcCC--cEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCch----HhhhheEEEccCcccCCC
Confidence 35899999999999 999999999999999999999999 9999999998887642 123333334443322 33
Q ss_pred CCcchhhhHhhhccCCCCHHHHHHHHHHHhhhcCCCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCccH
Q psy11993 473 KHGGREMVQLFEKGYGKDPAEIAFRAISHARDMHIDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEA 552 (630)
Q Consensus 473 ~~tv~env~l~~~~~~~d~~~ia~~ai~~a~~~~~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~Da 552 (630)
.+|+.+|+.+... +. ..||+++++..++++|+ .+| .++++|||+.++|.
T Consensus 96 ~~t~~~~i~~~~~---------------------~~----~LS~G~~qrv~laral~-----~~p-~illlDEP~~~LD~ 144 (194)
T cd03213 96 TLTVRETLMFAAK---------------------LR----GLSGGERKRVSIALELV-----SNP-SLLFLDEPTSGLDS 144 (194)
T ss_pred CCcHHHHHHHHHH---------------------hc----cCCHHHHHHHHHHHHHH-----cCC-CEEEEeCCCcCCCH
Confidence 4677776654210 00 78999999999999999 788 56679999999998
Q ss_pred HHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 553 VDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 553 v~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
..+ ..+.+.+..+.. .+.+.|++|+
T Consensus 145 ~~~-~~l~~~l~~~~~----~~~tiii~sh 169 (194)
T cd03213 145 SSA-LQVMSLLRRLAD----TGRTIICSIH 169 (194)
T ss_pred HHH-HHHHHHHHHHHh----CCCEEEEEec
Confidence 765 445555655532 2567778876
No 273
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.53 E-value=1.9e-14 Score=141.80 Aligned_cols=143 Identities=15% Similarity=0.115 Sum_probs=106.6
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHH--HhcCCeEEEeecccCCccHHHHHHHHHhhhcccCC-CcC
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWL--IENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHP-AAK 473 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l--~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~-~~~ 473 (630)
.+|++++|.+.+| ++++|+||||+||||+++.|++.+ .+..|+|.+.+.++. .+++.+..++.+... ++.
T Consensus 21 ~~l~~vs~~i~~G--e~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~-----~~~~~~i~~~~q~~~~~~~ 93 (192)
T cd03232 21 QLLNNISGYVKPG--TLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLD-----KNFQRSTGYVEQQDVHSPN 93 (192)
T ss_pred EeEEccEEEEeCC--cEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehH-----HHhhhceEEecccCccccC
Confidence 4789999999999 999999999999999999999975 378899999887763 233444444444322 445
Q ss_pred CcchhhhHhhhccCCCCHHHHHHHHHHHhhhcCCCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCccHH
Q psy11993 474 HGGREMVQLFEKGYGKDPAEIAFRAISHARDMHIDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAV 553 (630)
Q Consensus 474 ~tv~env~l~~~~~~~d~~~ia~~ai~~a~~~~~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~Dav 553 (630)
+|+.+|+.+... + . ..||+++++..++++|. .+| .++++|||+.++|..
T Consensus 94 ~tv~~~l~~~~~-------------~---~---------~LSgGe~qrv~la~al~-----~~p-~vlllDEP~~~LD~~ 142 (192)
T cd03232 94 LTVREALRFSAL-------------L---R---------GLSVEQRKRLTIGVELA-----AKP-SILFLDEPTSGLDSQ 142 (192)
T ss_pred CcHHHHHHHHHH-------------H---h---------cCCHHHhHHHHHHHHHh-----cCC-cEEEEeCCCcCCCHH
Confidence 678877764210 0 0 78999999999999999 788 577799999999987
Q ss_pred HHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 554 DQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 554 ~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
.+. .+.+.+.++.. .+.+.+++|+
T Consensus 143 ~~~-~l~~~l~~~~~----~~~tiiivtH 166 (192)
T cd03232 143 AAY-NIVRFLKKLAD----SGQAILCTIH 166 (192)
T ss_pred HHH-HHHHHHHHHHH----cCCEEEEEEc
Confidence 654 44455655542 2466788886
No 274
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.53 E-value=2.3e-14 Score=143.61 Aligned_cols=171 Identities=12% Similarity=0.008 Sum_probs=113.5
Q ss_pred hhhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccH---HHHHHHHHhhhcccCCCc
Q psy11993 396 VDILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGA---VEQLRTHVRHLCSLHPAA 472 (630)
Q Consensus 396 ~~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga---~eQLr~~~~~l~~~~~~~ 472 (630)
..+|++++|.+.+| ++++|+||||+||||++..|++.+.+..|+|.+.+.++..... ....+....++.+.....
T Consensus 14 ~~il~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~ 91 (218)
T cd03290 14 LATLSNINIRIPTG--QLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRYSVAYAAQKPWLL 91 (218)
T ss_pred CcceeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcceEEEEcCCCccc
Confidence 35889999999999 9999999999999999999999999999999998876533211 112223334444443333
Q ss_pred CCcchhhhHhhhccCCCCHHHHHHHHHHHhhh------c--C----CCeeeeccccchhchHHHHHHHHhhhhhcCCCeE
Q psy11993 473 KHGGREMVQLFEKGYGKDPAEIAFRAISHARD------M--H----IDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLL 540 (630)
Q Consensus 473 ~~tv~env~l~~~~~~~d~~~ia~~ai~~a~~------~--~----~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~V 540 (630)
..|+.+|+.+... . +... ..++++.+.. . + .+..+...||+++++..++++|. .+| .+
T Consensus 92 ~~t~~~nl~~~~~-~--~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~-----~~p-~i 161 (218)
T cd03290 92 NATVEENITFGSP-F--NKQR-YKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALY-----QNT-NI 161 (218)
T ss_pred cccHHHHHhhcCc-C--CHHH-HHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHh-----hCC-CE
Confidence 5789999876432 1 1111 1122222111 0 0 12235678999999999999999 788 57
Q ss_pred EEEeccccCccHHHHHHHHHH-HHhhcccCCCCCCeeEEEEcc
Q psy11993 541 LFVGEALVGNEAVDQLVKFNN-AMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 541 LlV~E~~~g~Dav~ql~~f~~-~l~~~~~~~~~~~i~gIIlTK 582 (630)
+++|||+.++|...+...+.. .+..+.. .+.+.|++|+
T Consensus 162 lllDEPt~~LD~~~~~~l~~~~ll~~~~~----~~~tii~~sH 200 (218)
T cd03290 162 VFLDDPFSALDIHLSDHLMQEGILKFLQD----DKRTLVLVTH 200 (218)
T ss_pred EEEeCCccccCHHHHHHHHHHHHHHHHhc----CCCEEEEEeC
Confidence 779999999998765433221 2322221 2467778876
No 275
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=99.53 E-value=2.8e-14 Score=163.05 Aligned_cols=170 Identities=18% Similarity=0.164 Sum_probs=128.5
Q ss_pred hhhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccCCCcCCc
Q psy11993 396 VDILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHPAAKHG 475 (630)
Q Consensus 396 ~~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~~~~~t 475 (630)
..+|+++++.+++| +.++|+|+||+||||+++.|++++.|..|+|.+.+.|.-... .+.++....++++.+..+..|
T Consensus 356 ~~il~~i~l~i~~G--~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~-~~~~~~~i~~v~Q~~~lf~~T 432 (582)
T PRK11176 356 VPALRNINFKIPAG--KTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYT-LASLRNQVALVSQNVHLFNDT 432 (582)
T ss_pred CccccCceEEeCCC--CEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEhhhcC-HHHHHhhceEEccCceeecch
Confidence 45899999999999 899999999999999999999999999999999998874433 346777788888887777899
Q ss_pred chhhhHhhhccCCCCHHHHHHHHHHHhh--------hcCCCeeeec----cccchhchHHHHHHHHhhhhhcCCCeEEEE
Q psy11993 476 GREMVQLFEKGYGKDPAEIAFRAISHAR--------DMHIDVVLID----TAGRMQDNEPLMRALAKLVKVNQPDLLLFV 543 (630)
Q Consensus 476 v~env~l~~~~~~~d~~~ia~~ai~~a~--------~~~~D~vlID----TaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV 543 (630)
+++|+.+.... ..+..++ .++++.+. ..++|..+.+ .|||+.|+..++|+|. .+| .++++
T Consensus 433 i~~Ni~~~~~~-~~~~~~i-~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARall-----~~~-~ilil 504 (582)
T PRK11176 433 IANNIAYARTE-QYSREQI-EEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALL-----RDS-PILIL 504 (582)
T ss_pred HHHHHhcCCCC-CCCHHHH-HHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHHHHH-----hCC-CEEEE
Confidence 99999875321 1233322 22333221 1346666544 6999999999999999 777 56669
Q ss_pred eccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 544 GEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 544 ~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
|||++++|...... +.+.+.+... +.+.|++|+
T Consensus 505 DEptsaLD~~t~~~-i~~~l~~~~~-----~~tvI~VtH 537 (582)
T PRK11176 505 DEATSALDTESERA-IQAALDELQK-----NRTSLVIAH 537 (582)
T ss_pred ECccccCCHHHHHH-HHHHHHHHhC-----CCEEEEEec
Confidence 99999999887654 4445544322 467889997
No 276
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.52 E-value=2.8e-14 Score=164.49 Aligned_cols=174 Identities=13% Similarity=0.050 Sum_probs=122.2
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHH--HHHHHHHhhhcccC---CC
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAV--EQLRTHVRHLCSLH---PA 471 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~--eQLr~~~~~l~~~~---~~ 471 (630)
.+|++|+|.+.+| ++++|+|+|||||||+++.|++++.+..|+|.+.+.|+.+.... ..++....++.+.. .+
T Consensus 338 ~~l~~vs~~i~~G--e~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~~~l~ 415 (623)
T PRK10261 338 HAVEKVSFDLWPG--ETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQDPYASLD 415 (623)
T ss_pred EEEeeeEeEEcCC--CEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCcCCHHHHHHhcCCeEEEecCchhhcC
Confidence 5899999999999 99999999999999999999999999999999998887543221 12233345555543 25
Q ss_pred cCCcchhhhHhhhccCCC-CHHH---HHHHHHHHhhhc--CCCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEec
Q psy11993 472 AKHGGREMVQLFEKGYGK-DPAE---IAFRAISHARDM--HIDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGE 545 (630)
Q Consensus 472 ~~~tv~env~l~~~~~~~-d~~~---ia~~ai~~a~~~--~~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E 545 (630)
+.+|+.+++.+....++. .... .+.++++.+... ..+..+-..|||++++..++++|. .+| .+|++||
T Consensus 416 ~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~~LSgGqrQRv~iAraL~-----~~p-~llllDE 489 (623)
T PRK10261 416 PRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYPHEFSGGQRQRICIARALA-----LNP-KVIIADE 489 (623)
T ss_pred CCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHh-----cCC-CEEEEeC
Confidence 568999998764322221 2222 223334333321 123446678999999999999999 888 5666999
Q ss_pred cccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 546 ALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 546 ~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
|++++|...+... .+.+.++.. ..+.+.|++|+
T Consensus 490 Pts~LD~~~~~~i-~~ll~~l~~---~~g~tvi~isH 522 (623)
T PRK10261 490 AVSALDVSIRGQI-INLLLDLQR---DFGIAYLFISH 522 (623)
T ss_pred CcccCCHHHHHHH-HHHHHHHHH---hcCCEEEEEeC
Confidence 9999998876543 345554432 12577888887
No 277
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.52 E-value=3.4e-14 Score=163.79 Aligned_cols=174 Identities=16% Similarity=0.095 Sum_probs=117.7
Q ss_pred hhhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeeccc----------CCccHHHHHHH----H
Q psy11993 396 VDILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDT----------FRAGAVEQLRT----H 461 (630)
Q Consensus 396 ~~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt----------~R~ga~eQLr~----~ 461 (630)
..+|++|+|.+.+| ++++|||+|||||||+++.|++++.+..|+|.+.+.+. ...... +++. .
T Consensus 29 ~~~l~~is~~v~~G--e~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~-~~~~~r~~~ 105 (623)
T PRK10261 29 IAAVRNLSFSLQRG--ETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIELSEQSAA-QMRHVRGAD 105 (623)
T ss_pred eeEEEeeEEEECCC--CEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEeccccccccccccCCHH-HHHHHhCCC
Confidence 35899999999999 99999999999999999999999999999998866422 111111 2222 2
Q ss_pred HhhhcccC---CCcCCcchhhhHhhhccC-CCCHHHHHHHHHHHhhhcCC-------CeeeeccccchhchHHHHHHHHh
Q psy11993 462 VRHLCSLH---PAAKHGGREMVQLFEKGY-GKDPAEIAFRAISHARDMHI-------DVVLIDTAGRMQDNEPLMRALAK 530 (630)
Q Consensus 462 ~~~l~~~~---~~~~~tv~env~l~~~~~-~~d~~~ia~~ai~~a~~~~~-------D~vlIDTaGr~~~~~~L~~aL~k 530 (630)
..++.+.+ .++.+|+.+|+.+..... +.+..+...++.+.+...++ +..+...|||++++..++++|.
T Consensus 106 ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~~LSgGq~QRv~iA~AL~- 184 (623)
T PRK10261 106 MAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILSRYPHQLSGGMRQRVMIAMALS- 184 (623)
T ss_pred EEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChhhHHhCCCccCCHHHHHHHHHHHHHh-
Confidence 23444432 135689999997643221 22333322233333333333 3446778999999999999999
Q ss_pred hhhhcCCCeEEEEeccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 531 LVKVNQPDLLLFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 531 l~~~~~Pd~VLlV~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
.+| .+|++|||++++|...+.. +.+.++++.. ..+.+.|++|+
T Consensus 185 ----~~P-~lLllDEPt~~LD~~~~~~-l~~ll~~l~~---~~g~tvi~itH 227 (623)
T PRK10261 185 ----CRP-AVLIADEPTTALDVTIQAQ-ILQLIKVLQK---EMSMGVIFITH 227 (623)
T ss_pred ----CCC-CEEEEeCCCCccCHHHHHH-HHHHHHHHHH---hcCCEEEEEcC
Confidence 889 4677999999999887643 3345554432 12567788886
No 278
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=99.52 E-value=3.7e-14 Score=143.57 Aligned_cols=167 Identities=14% Similarity=0.089 Sum_probs=113.6
Q ss_pred hhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccCC-CcCCcchhh
Q psy11993 401 DALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHP-AAKHGGREM 479 (630)
Q Consensus 401 ~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~-~~~~tv~en 479 (630)
+++|.+.+| ++++|+||||+||||+++.|++.+.+..|+|.+.+.+....... +....++.+... ++.+|+.+|
T Consensus 17 ~is~~i~~G--e~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~---~~~i~~~~q~~~~~~~~tv~e~ 91 (232)
T PRK10771 17 RFDLTVERG--ERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPS---RRPVSMLFQENNLFSHLTVAQN 91 (232)
T ss_pred eeEEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCChh---hccEEEEecccccccCCcHHHH
Confidence 688999999 99999999999999999999999999999999988776432221 223344444332 445799999
Q ss_pred hHhhhcc-CCCCH--HHHHHHHHHHhhhcC-CCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCccHHHH
Q psy11993 480 VQLFEKG-YGKDP--AEIAFRAISHARDMH-IDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQ 555 (630)
Q Consensus 480 v~l~~~~-~~~d~--~~ia~~ai~~a~~~~-~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~Dav~q 555 (630)
+.+.... ..... ...+.++++.+.... .+..+...|||++++..++++|. .+| .++++|||+.|+|...+
T Consensus 92 l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~-----~~p-~lllLDEP~~gLD~~~~ 165 (232)
T PRK10771 92 IGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLPGQLSGGQRQRVALARCLV-----REQ-PILLLDEPFSALDPALR 165 (232)
T ss_pred HhcccccccCCCHHHHHHHHHHHHHcCcHHHHhCCcccCCHHHHHHHHHHHHHh-----cCC-CEEEEeCCcccCCHHHH
Confidence 9653211 11111 122333343332211 24456688999999999999999 788 56669999999998765
Q ss_pred HHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 556 LVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 556 l~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
. .+.+.+.++... .+.+.|++|+
T Consensus 166 ~-~~~~~l~~~~~~---~~~tiii~sH 188 (232)
T PRK10771 166 Q-EMLTLVSQVCQE---RQLTLLMVSH 188 (232)
T ss_pred H-HHHHHHHHHHHh---cCCEEEEEEC
Confidence 3 455555554321 2456777776
No 279
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=99.52 E-value=2.2e-14 Score=167.31 Aligned_cols=201 Identities=19% Similarity=0.186 Sum_probs=143.4
Q ss_pred hhhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccCCCcCCc
Q psy11993 396 VDILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHPAAKHG 475 (630)
Q Consensus 396 ~~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~~~~~t 475 (630)
..+|++++|.+++| +.++|||+|||||||+++.|++++.|+.|+|.+.+.|..... ...+|....++.+.......|
T Consensus 478 ~~vL~~i~l~i~~G--~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~~~~-~~~lr~~i~~v~Q~~~lf~~T 554 (694)
T TIGR03375 478 TPALDNVSLTIRPG--EKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQID-PADLRRNIGYVPQDPRLFYGT 554 (694)
T ss_pred ccceeeeeEEECCC--CEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCC-HHHHHhccEEECCChhhhhhh
Confidence 35899999999999 999999999999999999999999999999999999885544 457788888888887777899
Q ss_pred chhhhHhhhccCCCCHHHHHHHHHHHhh--------hcCCCeeee----ccccchhchHHHHHHHHhhhhhcCCCeEEEE
Q psy11993 476 GREMVQLFEKGYGKDPAEIAFRAISHAR--------DMHIDVVLI----DTAGRMQDNEPLMRALAKLVKVNQPDLLLFV 543 (630)
Q Consensus 476 v~env~l~~~~~~~d~~~ia~~ai~~a~--------~~~~D~vlI----DTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV 543 (630)
+++|+.+.... .+..++ .++++.+. -.++|..+. ..|||++|+..++|+|. .+| .++++
T Consensus 555 I~eNi~~~~~~--~~~~~i-~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalARall-----~~p-~iliL 625 (694)
T TIGR03375 555 LRDNIALGAPY--ADDEEI-LRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALL-----RDP-PILLL 625 (694)
T ss_pred HHHHHhCCCCC--CCHHHH-HHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHh-----cCC-CEEEE
Confidence 99999876432 223322 23333221 125666653 46999999999999999 788 56669
Q ss_pred eccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcccCCcCccHHHHHHHHHHhCCcEEEEecCCCCccCCCCCHHH
Q psy11993 544 GEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGTGQTYTDLKSLNAKA 623 (630)
Q Consensus 544 ~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK~D~~~~~~G~~ls~~~~~g~PI~fvg~Gq~v~DL~~~~~~~ 623 (630)
|||++++|..... .+.+.+.++.. +.+.|++|+= .. .+. .. --|..+..|+-+. .-+.+.
T Consensus 626 DE~Ts~LD~~te~-~i~~~l~~~~~-----~~T~iiItHr------l~-~~~---~~-D~iivl~~G~i~e---~G~~~e 685 (694)
T TIGR03375 626 DEPTSAMDNRSEE-RFKDRLKRWLA-----GKTLVLVTHR------TS-LLD---LV-DRIIVMDNGRIVA---DGPKDQ 685 (694)
T ss_pred eCCCCCCCHHHHH-HHHHHHHHHhC-----CCEEEEEecC------HH-HHH---hC-CEEEEEeCCEEEe---eCCHHH
Confidence 9999999987654 34445554432 4678888871 11 112 11 2466677776543 223444
Q ss_pred HHHHh
Q psy11993 624 VVNAL 628 (630)
Q Consensus 624 ~v~~L 628 (630)
+.+.+
T Consensus 686 Ll~~~ 690 (694)
T TIGR03375 686 VLEAL 690 (694)
T ss_pred HHHHh
Confidence 44443
No 280
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.52 E-value=3.1e-14 Score=160.46 Aligned_cols=172 Identities=13% Similarity=0.112 Sum_probs=118.7
Q ss_pred hhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccC----CCcC
Q psy11993 398 ILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLH----PAAK 473 (630)
Q Consensus 398 iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~----~~~~ 473 (630)
+|++++|.+.+| ++++|+|||||||||+++.|++.+.+..|+|.+.+.++.+......++....++.+.. .++.
T Consensus 278 ~l~~isl~i~~G--e~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~l~~~ 355 (510)
T PRK15439 278 GFRNISLEVRAG--EILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARGLVYLPEDRQSSGLYLD 355 (510)
T ss_pred CccceeEEEcCC--cEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHHHHhCCcEECCCChhhCCccCC
Confidence 588999999999 9999999999999999999999999999999998877654333322333344444432 2445
Q ss_pred CcchhhhHhhhc---cCCCCH---HHHHHHHHHHhhhc--CCCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEec
Q psy11993 474 HGGREMVQLFEK---GYGKDP---AEIAFRAISHARDM--HIDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGE 545 (630)
Q Consensus 474 ~tv~env~l~~~---~~~~d~---~~ia~~ai~~a~~~--~~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E 545 (630)
+|+.+|+..+.. ...... ...+.++++.+... ..+..+-..|||++++..++++|. .+| .+|++||
T Consensus 356 ~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrl~la~al~-----~~p-~lLlLDE 429 (510)
T PRK15439 356 APLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAARTLSGGNQQKVLIAKCLE-----ASP-QLLIVDE 429 (510)
T ss_pred CcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCccccCCcHHHHHHHHHHHHh-----hCC-CEEEECC
Confidence 788888753211 111111 12233444444332 234556788999999999999998 788 5677999
Q ss_pred cccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 546 ALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 546 ~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
|+.|+|...+. .+.+.+.++.. .+.+.|++|+
T Consensus 430 Pt~gLD~~~~~-~l~~~l~~l~~----~g~tiIivsH 461 (510)
T PRK15439 430 PTRGVDVSARN-DIYQLIRSIAA----QNVAVLFISS 461 (510)
T ss_pred CCcCcChhHHH-HHHHHHHHHHh----CCCEEEEECC
Confidence 99999987754 44455655543 2467788887
No 281
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.52 E-value=8.3e-14 Score=142.51 Aligned_cols=172 Identities=17% Similarity=0.166 Sum_probs=117.1
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHH--h---cCCeEEEeecccCCcc-HHHHHHHHHhhhcccCC
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLI--E---NNLNVLIAACDTFRAG-AVEQLRTHVRHLCSLHP 470 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~--~---~ggkVlI~~~Dt~R~g-a~eQLr~~~~~l~~~~~ 470 (630)
.+|++++|.+.+| ++++|+||||+||||+++.|++.+. + ..|+|.+.+.++.... ....++....++.+...
T Consensus 17 ~~l~~~s~~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~~ 94 (250)
T PRK14266 17 HILKNVNLDIPKN--SVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVVELRKKVGMVFQKPN 94 (250)
T ss_pred EEEeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHHHHhhheEEEecCCc
Confidence 3789999999999 9999999999999999999999864 3 7899999987764321 12234555566665444
Q ss_pred CcCCcchhhhHhhhccCCC-CHH---HHHHHHHHHhhh-----cCCCeeeeccccchhchHHHHHHHHhhhhhcCCCeEE
Q psy11993 471 AAKHGGREMVQLFEKGYGK-DPA---EIAFRAISHARD-----MHIDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLL 541 (630)
Q Consensus 471 ~~~~tv~env~l~~~~~~~-d~~---~ia~~ai~~a~~-----~~~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VL 541 (630)
....|+.+|+.+....++. +.. ..+.++++.+.. ...+.-....||+++++..++++|. .+| .++
T Consensus 95 ~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral~-----~~p-~ll 168 (250)
T PRK14266 95 PFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDKLDKSALGLSGGQQQRLCIARTIA-----VSP-EVI 168 (250)
T ss_pred cCcchHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHHHhCCcccCCHHHHHHHHHHHHHH-----cCC-CEE
Confidence 3345899998764322221 111 112222322211 0123345678999999999999999 788 577
Q ss_pred EEeccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 542 FVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 542 lV~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
++|||+.|+|...+ ..+.+.+.++.. +.+.+++|+
T Consensus 169 llDEP~~gLD~~~~-~~l~~~l~~~~~-----~~tiii~sh 203 (250)
T PRK14266 169 LMDEPCSALDPIST-TKIEDLIHKLKE-----DYTIVIVTH 203 (250)
T ss_pred EEcCCCccCCHHHH-HHHHHHHHHHhc-----CCeEEEEEC
Confidence 79999999998765 345566665532 456777776
No 282
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.51 E-value=3.2e-14 Score=163.02 Aligned_cols=167 Identities=15% Similarity=0.079 Sum_probs=128.6
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccCCCcCCcc
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHPAAKHGG 476 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~~~~~tv 476 (630)
.+|+++++.+++| +.++|+|+|||||||+++.|++++.|.+|+|.+.+.|.... ..+.++.+..++++.+.....|+
T Consensus 355 ~il~~i~l~i~~G--e~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~-~~~~l~~~i~~v~Q~~~lF~~Ti 431 (592)
T PRK10790 355 LVLQNINLSVPSR--GFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSL-SHSVLRQGVAMVQQDPVVLADTF 431 (592)
T ss_pred ceeeceeEEEcCC--CEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhhC-CHHHHHhheEEEccCCccccchH
Confidence 5899999999999 99999999999999999999999999999999999887433 34577888899998888788899
Q ss_pred hhhhHhhhccCCCCHHHHHHHHHHHhh--------hcCCCeeee----ccccchhchHHHHHHHHhhhhhcCCCeEEEEe
Q psy11993 477 REMVQLFEKGYGKDPAEIAFRAISHAR--------DMHIDVVLI----DTAGRMQDNEPLMRALAKLVKVNQPDLLLFVG 544 (630)
Q Consensus 477 ~env~l~~~~~~~d~~~ia~~ai~~a~--------~~~~D~vlI----DTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~ 544 (630)
++|+.+.. . .+..++ .++++.+. -.++|..+. ..|||+.|+..++|+|. .+| .++++|
T Consensus 432 ~~NI~~~~-~--~~d~~i-~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARaLl-----~~~-~illlD 501 (592)
T PRK10790 432 LANVTLGR-D--ISEEQV-WQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLV-----QTP-QILILD 501 (592)
T ss_pred HHHHHhCC-C--CCHHHH-HHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHH-----hCC-CEEEEe
Confidence 99998864 2 233332 23333222 124666543 36999999999999999 677 577799
Q ss_pred ccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 545 EALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 545 E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
||++++|.... +.+.+.+.++.. ..+.|++|+
T Consensus 502 Epts~LD~~t~-~~i~~~l~~~~~-----~~tvIivtH 533 (592)
T PRK10790 502 EATANIDSGTE-QAIQQALAAVRE-----HTTLVVIAH 533 (592)
T ss_pred CCcccCCHHHH-HHHHHHHHHHhC-----CCEEEEEec
Confidence 99999998764 344555654432 467888887
No 283
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.51 E-value=5.8e-14 Score=143.80 Aligned_cols=193 Identities=20% Similarity=0.157 Sum_probs=124.5
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHH--h---cCCeEEEeecccCCccH-HHHHHHHHhhhcccCC
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLI--E---NNLNVLIAACDTFRAGA-VEQLRTHVRHLCSLHP 470 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~--~---~ggkVlI~~~Dt~R~ga-~eQLr~~~~~l~~~~~ 470 (630)
.+|++++|.+.+| ++++|+|+||+||||+++.|++.+. + ..|+|.+.+.+..+... ...++....++.+...
T Consensus 19 ~~l~~vs~~i~~G--e~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~ 96 (252)
T PRK14255 19 EALKGIDLDFNQN--EITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVVQLRKQVGMVFQQPN 96 (252)
T ss_pred eEEecceEEEcCC--CEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccHHHhcCeEEEEECCCc
Confidence 4789999999999 9999999999999999999999864 4 47999998877643111 1222333445554433
Q ss_pred CcCCcchhhhHhhhccCCC-CHH---HHHHHHHHHhhhc-----CCCeeeeccccchhchHHHHHHHHhhhhhcCCCeEE
Q psy11993 471 AAKHGGREMVQLFEKGYGK-DPA---EIAFRAISHARDM-----HIDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLL 541 (630)
Q Consensus 471 ~~~~tv~env~l~~~~~~~-d~~---~ia~~ai~~a~~~-----~~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VL 541 (630)
....|+.+|+.+.....+. ... ..+..+++.+... ..+..+...||+++++..++++|. .+| .++
T Consensus 97 ~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~Gq~qrv~laral~-----~~p-~ll 170 (252)
T PRK14255 97 PFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKDHLHESALSLSGGQQQRVCIARVLA-----VKP-DVI 170 (252)
T ss_pred cCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchhhHHhcCcccCCHHHHHHHHHHHHHh-----cCC-CEE
Confidence 2336999999764322221 111 1122223222210 123446678999999999999999 788 566
Q ss_pred EEeccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcccCCcCccHHHHHHHHHHhCCcEEEEecCCCC
Q psy11993 542 FVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGTGQTY 613 (630)
Q Consensus 542 lV~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK~D~~~~~~G~~ls~~~~~g~PI~fvg~Gq~v 613 (630)
++|||+.|+|...+ ..+.+.+.++.. ..+.|++|+- . ..+....-.|..+..|.-+
T Consensus 171 llDEPt~~LD~~~~-~~l~~~l~~~~~-----~~tii~vsH~------~----~~~~~~~d~i~~l~~G~i~ 226 (252)
T PRK14255 171 LLDEPTSALDPISS-TQIENMLLELRD-----QYTIILVTHS------M----HQASRISDKTAFFLTGNLI 226 (252)
T ss_pred EEcCCCccCCHHHH-HHHHHHHHHHHh-----CCEEEEEECC------H----HHHHHhCCEEEEEECCEEE
Confidence 69999999998765 445566665542 3567777762 1 1122222356677666543
No 284
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=99.51 E-value=6.4e-14 Score=145.21 Aligned_cols=175 Identities=19% Similarity=0.124 Sum_probs=117.7
Q ss_pred hhhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHH--HHHHHHHhhhcccC---C
Q psy11993 396 VDILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAV--EQLRTHVRHLCSLH---P 470 (630)
Q Consensus 396 ~~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~--eQLr~~~~~l~~~~---~ 470 (630)
..+|++++|.+.+| ++++|+||||+||||++..|++.+.+..|+|.+.+.++...... ..++....++.+.. .
T Consensus 25 ~~il~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~ 102 (268)
T PRK10419 25 QTVLNNVSLSLKSG--ETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRAQRKAFRRDIQMVFQDSISAV 102 (268)
T ss_pred eeeEeceeEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccChhHHHHHHhcEEEEEcChhhcc
Confidence 35889999999999 99999999999999999999999999999999998776443221 12333444444432 2
Q ss_pred CcCCcchhhhHhhhcc-CCCCHHH---HHHHHHHHhhhc--CCCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEe
Q psy11993 471 AAKHGGREMVQLFEKG-YGKDPAE---IAFRAISHARDM--HIDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVG 544 (630)
Q Consensus 471 ~~~~tv~env~l~~~~-~~~d~~~---ia~~ai~~a~~~--~~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~ 544 (630)
.+..++.+++.+.... ...+... .+.++++.+... ..+..+...||+++++..++++|. .+| .+|++|
T Consensus 103 ~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~Ge~qrl~laral~-----~~p-~lllLD 176 (268)
T PRK10419 103 NPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDSVLDKRPPQLSGGQLQRVCLARALA-----VEP-KLLILD 176 (268)
T ss_pred CCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCChhHhhCCCccCChHHHHHHHHHHHHh-----cCC-CEEEEe
Confidence 3457788887543211 1222222 233344433321 123345678999999999999999 888 566699
Q ss_pred ccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 545 EALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 545 E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
||+.++|...+. .+.+.+.++... .+.+.|++|+
T Consensus 177 EPt~~LD~~~~~-~~~~~l~~~~~~---~~~tiiivsH 210 (268)
T PRK10419 177 EAVSNLDLVLQA-GVIRLLKKLQQQ---FGTACLFITH 210 (268)
T ss_pred CCCcccCHHHHH-HHHHHHHHHHHH---cCcEEEEEEC
Confidence 999999987643 344455544321 1467778776
No 285
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=99.51 E-value=3.2e-14 Score=166.31 Aligned_cols=168 Identities=19% Similarity=0.161 Sum_probs=128.4
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccCCCcCCcc
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHPAAKHGG 476 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~~~~~tv 476 (630)
.+|+++++.+++| +.++|+|+|||||||+++.|++++.|+.|+|++.+.|..... .+.+|....++++.......|+
T Consensus 488 ~iL~~isl~i~~G--~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~-~~~lr~~i~~v~Q~~~lf~gTI 564 (708)
T TIGR01193 488 NILSDISLTIKMN--SKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDID-RHTLRQFINYLPQEPYIFSGSI 564 (708)
T ss_pred cceeceeEEECCC--CEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEHHHcC-HHHHHHheEEEecCceehhHHH
Confidence 5899999999999 999999999999999999999999999999999999874433 4577888888888877888999
Q ss_pred hhhhHhhhccCCCCHHHHHHHHHHHhh--------hcCCCeeeec----cccchhchHHHHHHHHhhhhhcCCCeEEEEe
Q psy11993 477 REMVQLFEKGYGKDPAEIAFRAISHAR--------DMHIDVVLID----TAGRMQDNEPLMRALAKLVKVNQPDLLLFVG 544 (630)
Q Consensus 477 ~env~l~~~~~~~d~~~ia~~ai~~a~--------~~~~D~vlID----TaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~ 544 (630)
++|+.+.... ..+..++ .++++.+. -.++|..+.+ .|||++|+..++|+|. .+| .++++|
T Consensus 565 ~eNi~l~~~~-~~~~~~i-~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialARall-----~~p-~iliLD 636 (708)
T TIGR01193 565 LENLLLGAKE-NVSQDEI-WAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALL-----TDS-KVLILD 636 (708)
T ss_pred HHHHhccCCC-CCCHHHH-HHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHHHHHh-----hCC-CEEEEe
Confidence 9999886321 1233332 23333221 1356766543 6999999999999999 788 566799
Q ss_pred ccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 545 EALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 545 E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
||++++|..... .+.+.+..+ .+.+.|++|+
T Consensus 637 E~Ts~LD~~te~-~i~~~L~~~------~~~T~IiitH 667 (708)
T TIGR01193 637 ESTSNLDTITEK-KIVNNLLNL------QDKTIIFVAH 667 (708)
T ss_pred CccccCCHHHHH-HHHHHHHHh------cCCEEEEEec
Confidence 999999987654 444555433 1457788887
No 286
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=99.51 E-value=4.4e-14 Score=161.06 Aligned_cols=169 Identities=19% Similarity=0.188 Sum_probs=127.6
Q ss_pred hhhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccCCCcCCc
Q psy11993 396 VDILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHPAAKHG 475 (630)
Q Consensus 396 ~~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~~~~~t 475 (630)
..+|++++|.+++| +.++||||+||||||+++.|++++.++.|+|++.+.|+... ..+.+|....++.|.+.....|
T Consensus 342 ~~vl~~is~~i~~G--e~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i-~~~~lr~~I~~V~Qd~~LF~~T 418 (567)
T COG1132 342 KPVLKDISFSIEPG--EKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDI-SLDSLRKRIGIVSQDPLLFSGT 418 (567)
T ss_pred CccccCceEEEcCC--CEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhc-CHHHHHHhccEEcccceeeccc
Confidence 35899999999999 99999999999999999999999999999999988888444 3567888888888887777799
Q ss_pred chhhhHhhhccCCCCHHHHHHHHHHHh------hh--cCCCeeee----ccccchhchHHHHHHHHhhhhhcCCCeEEEE
Q psy11993 476 GREMVQLFEKGYGKDPAEIAFRAISHA------RD--MHIDVVLI----DTAGRMQDNEPLMRALAKLVKVNQPDLLLFV 543 (630)
Q Consensus 476 v~env~l~~~~~~~d~~~ia~~ai~~a------~~--~~~D~vlI----DTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV 543 (630)
+++|+.+.... .+..++ .+|++.+ .. .++|.++. ..|||++|+..++|++. .+| .++++
T Consensus 419 I~~NI~~g~~~--at~eei-~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall-----~~~-~ILIL 489 (567)
T COG1132 419 IRENIALGRPD--ATDEEI-EEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALL-----RNP-PILIL 489 (567)
T ss_pred HHHHHhcCCCC--CCHHHH-HHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHHh-----cCC-CEEEE
Confidence 99999886532 122222 2222222 11 26788775 46999999999999999 777 68889
Q ss_pred eccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 544 GEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 544 ~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
|||++..|....... .+.+....+ +-+.+|+++
T Consensus 490 DEaTSalD~~tE~~I-~~~l~~l~~-----~rT~iiIaH 522 (567)
T COG1132 490 DEATSALDTETEALI-QDALKKLLK-----GRTTLIIAH 522 (567)
T ss_pred eccccccCHHhHHHH-HHHHHHHhc-----CCEEEEEec
Confidence 999999998875433 334433322 225666665
No 287
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.51 E-value=6.5e-14 Score=158.12 Aligned_cols=174 Identities=16% Similarity=0.158 Sum_probs=115.7
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHH--HhcCCeEEEee-----------------------ccc--
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWL--IENNLNVLIAA-----------------------CDT-- 449 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l--~~~ggkVlI~~-----------------------~Dt-- 449 (630)
.+|++++|.+.+| ++++|+|||||||||+++.|++.+ .+..|+|.+.+ .++
T Consensus 14 ~~l~~is~~i~~G--e~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~ 91 (520)
T TIGR03269 14 EVLKNISFTIEEG--EVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSKVGEPCPVCGGTLEP 91 (520)
T ss_pred EeeeceeEEEcCC--CEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEeccccccccccccccccccccccccccccc
Confidence 4789999999999 999999999999999999999997 68899998851 111
Q ss_pred -----CCccH--HHHHHHHHhhhccc--CCCcCCcchhhhHhhhccCCCCHHHH---HHHHHHHhhhcC-CCeeeecccc
Q psy11993 450 -----FRAGA--VEQLRTHVRHLCSL--HPAAKHGGREMVQLFEKGYGKDPAEI---AFRAISHARDMH-IDVVLIDTAG 516 (630)
Q Consensus 450 -----~R~ga--~eQLr~~~~~l~~~--~~~~~~tv~env~l~~~~~~~d~~~i---a~~ai~~a~~~~-~D~vlIDTaG 516 (630)
..... ...++....++.+. ..++.+|+.+|+.+.....+....+. +.++++.+.... .+..+-..||
T Consensus 92 ~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSg 171 (520)
T TIGR03269 92 EEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQLSHRITHIARDLSG 171 (520)
T ss_pred cchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcCcccCCH
Confidence 01011 11223334444443 22456799999976433233332222 233333333221 1344678899
Q ss_pred chhchHHHHHHHHhhhhhcCCCeEEEEeccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 517 RMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 517 r~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
|++++..++++|. .+| .+|++|||++++|...+. .+.+.+.++... .+.+.|++|+
T Consensus 172 Gq~qrv~iA~al~-----~~p-~lllLDEPt~~LD~~~~~-~l~~~l~~l~~~---~g~tviivtH 227 (520)
T TIGR03269 172 GEKQRVVLARQLA-----KEP-FLFLADEPTGTLDPQTAK-LVHNALEEAVKA---SGISMVLTSH 227 (520)
T ss_pred HHHHHHHHHHHHh-----cCC-CEEEeeCCcccCCHHHHH-HHHHHHHHHHHh---cCcEEEEEeC
Confidence 9999999999999 888 567799999999987754 344455555321 2467788887
No 288
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=99.51 E-value=3.4e-14 Score=145.94 Aligned_cols=171 Identities=14% Similarity=0.102 Sum_probs=115.9
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHh----cCCeEEEeecccCCccHHHHHHHHHhhhcccC---
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIE----NNLNVLIAACDTFRAGAVEQLRTHVRHLCSLH--- 469 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~----~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~--- 469 (630)
.+|++++|.+.+| ++++|+|+||+||||+++.|++.+.+ ..|+|.+.+.++.+. ...+....++.+..
T Consensus 17 ~il~~vsl~i~~G--e~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~---~~~~~~i~~v~q~~~~~ 91 (254)
T PRK10418 17 PLVHGVSLTLQRG--RVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPC---ALRGRKIATIMQNPRSA 91 (254)
T ss_pred ceecceEEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeecccc---ccccceEEEEecCCccc
Confidence 4788999999999 99999999999999999999999988 889999988776321 11122344444432
Q ss_pred CCcCCcchhhhHhhhccCCCCH-HHHHHHHHHHhhhcC----CCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEe
Q psy11993 470 PAAKHGGREMVQLFEKGYGKDP-AEIAFRAISHARDMH----IDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVG 544 (630)
Q Consensus 470 ~~~~~tv~env~l~~~~~~~d~-~~ia~~ai~~a~~~~----~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~ 544 (630)
..+..++.+++.......+... ...+.++++.+.... .+.-+-+.||+++++..++++|. .+| .+|++|
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~Gq~qrv~laral~-----~~p-~lLlLD 165 (254)
T PRK10418 92 FNPLHTMHTHARETCLALGKPADDATLTAALEAVGLENAARVLKLYPFEMSGGMLQRMMIALALL-----CEA-PFIIAD 165 (254)
T ss_pred cCccccHHHHHHHHHHHcCCChHHHHHHHHHHHcCCCChhhhhhcCCcccCHHHHHHHHHHHHHh-----cCC-CEEEEe
Confidence 1233566666654322222221 223344444444332 13345678999999999999999 888 577799
Q ss_pred ccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 545 EALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 545 E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
||+.|+|...+ ..+.+.+.++.. ..+.+.+++|+
T Consensus 166 EPt~~LD~~~~-~~l~~~L~~~~~---~~g~til~~sH 199 (254)
T PRK10418 166 EPTTDLDVVAQ-ARILDLLESIVQ---KRALGMLLVTH 199 (254)
T ss_pred CCCcccCHHHH-HHHHHHHHHHHH---hcCcEEEEEec
Confidence 99999998664 345555655432 12467778876
No 289
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=99.51 E-value=3.1e-14 Score=163.02 Aligned_cols=168 Identities=18% Similarity=0.166 Sum_probs=128.4
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccCCCcCCcc
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHPAAKHGG 476 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~~~~~tv 476 (630)
.+|+++++.+++| +.++|+|+||+||||+++.|++++.|..|.|.+.+.|..... .+.++.+..++++.+.....|+
T Consensus 349 ~iL~~inl~i~~G--~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~~-~~~~r~~i~~v~Q~~~lf~~Ti 425 (588)
T PRK13657 349 QGVEDVSFEAKPG--QTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVT-RASLRRNIAVVFQDAGLFNRSI 425 (588)
T ss_pred ceecceeEEECCC--CEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhCC-HHHHHhheEEEecCcccccccH
Confidence 4899999999999 999999999999999999999999999999999998885443 4567888888888888788999
Q ss_pred hhhhHhhhccCCCCHHHHHHHHHHHhh--------hcCCCeeeec----cccchhchHHHHHHHHhhhhhcCCCeEEEEe
Q psy11993 477 REMVQLFEKGYGKDPAEIAFRAISHAR--------DMHIDVVLID----TAGRMQDNEPLMRALAKLVKVNQPDLLLFVG 544 (630)
Q Consensus 477 ~env~l~~~~~~~d~~~ia~~ai~~a~--------~~~~D~vlID----TaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~ 544 (630)
++|+.+... ..+..+ ...+++.+. ..++|..+.+ .|||+.|+..++|+|. .+| .++++|
T Consensus 426 ~~Ni~~~~~--~~~d~~-i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARall-----~~~-~iliLD 496 (588)
T PRK13657 426 EDNIRVGRP--DATDEE-MRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALL-----KDP-PILILD 496 (588)
T ss_pred HHHHhcCCC--CCCHHH-HHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHHh-----cCC-CEEEEe
Confidence 999987532 122222 222332221 1356766544 7999999999999999 777 566699
Q ss_pred ccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 545 EALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 545 E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
||++++|..... .+.+.+.+.. .+.+.|++|+
T Consensus 497 Epts~LD~~t~~-~i~~~l~~~~-----~~~tvIiitH 528 (588)
T PRK13657 497 EATSALDVETEA-KVKAALDELM-----KGRTTFIIAH 528 (588)
T ss_pred CCccCCCHHHHH-HHHHHHHHHh-----cCCEEEEEEe
Confidence 999999987654 3444454332 2567888887
No 290
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.51 E-value=8.9e-14 Score=139.01 Aligned_cols=169 Identities=17% Similarity=0.102 Sum_probs=112.4
Q ss_pred hhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCcc---HHHHHHHHHhhhcccCC-CcCCcc
Q psy11993 401 DALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAG---AVEQLRTHVRHLCSLHP-AAKHGG 476 (630)
Q Consensus 401 ~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~g---a~eQLr~~~~~l~~~~~-~~~~tv 476 (630)
+++|.+. + ++++|+||||+||||+++.|++.+.+..|+|.+.+.++.... ....++....++.+... ++.+|+
T Consensus 16 ~vsl~i~--~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~ 92 (214)
T cd03297 16 KIDFDLN--E-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQYALFPHLNV 92 (214)
T ss_pred CceEEEc--c-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhhcEEEEecCCccCCCCCH
Confidence 6787775 4 799999999999999999999999999999999887763211 11122333444444332 446899
Q ss_pred hhhhHhhhccCCC-CHHHHHHHHHHHhhhcC-CCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCccHHH
Q psy11993 477 REMVQLFEKGYGK-DPAEIAFRAISHARDMH-IDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVD 554 (630)
Q Consensus 477 ~env~l~~~~~~~-d~~~ia~~ai~~a~~~~-~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~Dav~ 554 (630)
.+|+.+....+.. .....+.+.++.+.... .+..+...|||++++..++++|. .+| .++++|||+.|+|...
T Consensus 93 ~~~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~-----~~p-~llllDEPt~~LD~~~ 166 (214)
T cd03297 93 RENLAFGLKRKRNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARALA-----AQP-ELLLLDEPFSALDRAL 166 (214)
T ss_pred HHHHHHHHhhCCHHHHHHHHHHHHHHcCCHhHhhcCcccCCHHHHHHHHHHHHHh-----cCC-CEEEEcCCcccCCHHH
Confidence 9998765322211 01112333343332221 23446778999999999999999 788 5666999999999876
Q ss_pred HHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 555 QLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 555 ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
+ ..+.+.+.++... .+.+.+++|+
T Consensus 167 ~-~~l~~~l~~~~~~---~~~tiii~sH 190 (214)
T cd03297 167 R-LQLLPELKQIKKN---LNIPVIFVTH 190 (214)
T ss_pred H-HHHHHHHHHHHHH---cCcEEEEEec
Confidence 5 4455556555321 1456788886
No 291
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.50 E-value=4.8e-14 Score=176.86 Aligned_cols=171 Identities=16% Similarity=0.132 Sum_probs=125.9
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccCC-CcCCc
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHP-AAKHG 475 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~-~~~~t 475 (630)
.+|++++|.+.+| ++++|+||||+|||||+++|++.+.++.|+|.+.+.+..+. ..+.+...+++.+... ++.+|
T Consensus 1953 ~aL~~ISf~I~~G--Ei~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~~--~~~~r~~IGy~pQ~~~L~~~LT 2028 (2272)
T TIGR01257 1953 PAVDRLCVGVRPG--ECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTN--ISDVHQNMGYCPQFDAIDDLLT 2028 (2272)
T ss_pred eEEEeeEEEEcCC--cEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcch--HHHHhhhEEEEeccccCCCCCC
Confidence 5899999999999 99999999999999999999999999999999999887431 2234445555555433 55799
Q ss_pred chhhhHhhhccCCCCHHHH---HHHHHHHhhhcC-CCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCcc
Q psy11993 476 GREMVQLFEKGYGKDPAEI---AFRAISHARDMH-IDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNE 551 (630)
Q Consensus 476 v~env~l~~~~~~~d~~~i---a~~ai~~a~~~~-~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~D 551 (630)
+++++.++...++...... +.++++.+.... .|..+-..|||++++..++++|. .+| .++++|||++|+|
T Consensus 2029 v~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~~dk~~~~LSGGqKqRLslA~ALi-----~~P-~VLLLDEPTsGLD 2102 (2272)
T TIGR01257 2029 GREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALI-----GCP-PLVLLDEPTTGMD 2102 (2272)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHh-----cCC-CEEEEECCCCCCC
Confidence 9999998765555433222 223333333222 24556788999999999999999 888 5677999999999
Q ss_pred HHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 552 AVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 552 av~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
...+. .+.+.+.++.. .+.+.|+.|+
T Consensus 2103 p~sr~-~l~~lL~~l~~----~g~TIILtTH 2128 (2272)
T TIGR01257 2103 PQARR-MLWNTIVSIIR----EGRAVVLTSH 2128 (2272)
T ss_pred HHHHH-HHHHHHHHHHh----CCCEEEEEeC
Confidence 98764 44455655532 2466677777
No 292
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=99.50 E-value=6.4e-14 Score=143.55 Aligned_cols=174 Identities=18% Similarity=0.152 Sum_probs=113.0
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecc-----cCCccHHHH---HHHHHhhhccc
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACD-----TFRAGAVEQ---LRTHVRHLCSL 468 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~D-----t~R~ga~eQ---Lr~~~~~l~~~ 468 (630)
.+|++++|.+.+| ++++|+||||+||||+++.|++.+.+..|+|.+.+.+ +.+....+. ++....++.+.
T Consensus 17 ~~l~~isl~i~~G--e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~q~ 94 (253)
T TIGR02323 17 KGCRDVSFDLYPG--EVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAERRRLMRTEWGFVHQN 94 (253)
T ss_pred eEeecceEEEeCC--cEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHHHHHHhhhcceEEEEeC
Confidence 3689999999999 9999999999999999999999999999999998766 433322211 11223333333
Q ss_pred CC---CcCCcchhhhHhhhccCC-C---CHHHHHHHHHHHhhhc--CCCeeeeccccchhchHHHHHHHHhhhhhcCCCe
Q psy11993 469 HP---AAKHGGREMVQLFEKGYG-K---DPAEIAFRAISHARDM--HIDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDL 539 (630)
Q Consensus 469 ~~---~~~~tv~env~l~~~~~~-~---d~~~ia~~ai~~a~~~--~~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~ 539 (630)
.. ....++.+|+........ . .....+...++.+... ..+..+-..||+++++..++++|. .+| .
T Consensus 95 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~LSgG~~qrv~laral~-----~~p-~ 168 (253)
T TIGR02323 95 PRDGLRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDPTRIDDLPRAFSGGMQQRLQIARNLV-----TRP-R 168 (253)
T ss_pred cccccCccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCChhhhhcCchhcCHHHHHHHHHHHHHh-----cCC-C
Confidence 21 233566677643211011 1 1112223333333321 123346678999999999999999 788 5
Q ss_pred EEEEeccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 540 LLFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 540 VLlV~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
+|++|||+.++|...+. .+.+.+.++.. ..+.+.|++|+
T Consensus 169 vlllDEP~~~LD~~~~~-~l~~~l~~~~~---~~~~tii~vsH 207 (253)
T TIGR02323 169 LVFMDEPTGGLDVSVQA-RLLDLLRGLVR---DLGLAVIIVTH 207 (253)
T ss_pred EEEEcCCCccCCHHHHH-HHHHHHHHHHH---hcCCEEEEEeC
Confidence 66689999999987653 44455554432 12567788887
No 293
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.50 E-value=4.8e-14 Score=159.59 Aligned_cols=174 Identities=13% Similarity=0.096 Sum_probs=118.5
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHh-----cCCeEEEeecccCCccHHH--HHH-HHHhhhccc
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIE-----NNLNVLIAACDTFRAGAVE--QLR-THVRHLCSL 468 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~-----~ggkVlI~~~Dt~R~ga~e--QLr-~~~~~l~~~ 468 (630)
.+|++++|.+.+| ++++|+|||||||||+++.|++.+.+ ..|+|.+.+.++......+ ..+ ....++.+.
T Consensus 23 ~~l~~isl~i~~G--e~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~Q~ 100 (529)
T PRK15134 23 TVVNDVSLQIEAG--ETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQTLRGVRGNKIAMIFQE 100 (529)
T ss_pred eeeeceEEEEeCC--CEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHHHHHHHhcCceEEEecC
Confidence 5899999999999 99999999999999999999999986 6899999888764322211 112 123444443
Q ss_pred C---CCcCCcchhhhHhhhcc-CCCCHH---HHHHHHHHHhhhcC----CCeeeeccccchhchHHHHHHHHhhhhhcCC
Q psy11993 469 H---PAAKHGGREMVQLFEKG-YGKDPA---EIAFRAISHARDMH----IDVVLIDTAGRMQDNEPLMRALAKLVKVNQP 537 (630)
Q Consensus 469 ~---~~~~~tv~env~l~~~~-~~~d~~---~ia~~ai~~a~~~~----~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~P 537 (630)
. ..+.+++.+++.+.... .+.... ..+.++++.+...+ .+..+-..|||++++..++++|. .+|
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~LSgGe~qrv~iAraL~-----~~p 175 (529)
T PRK15134 101 PMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGGERQRVMIAMALL-----TRP 175 (529)
T ss_pred chhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhhCCcccCHHHHHHHHHHHHHh-----cCC
Confidence 2 23446788887643211 122222 22334444443322 14456788999999999999999 888
Q ss_pred CeEEEEeccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 538 DLLLFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 538 d~VLlV~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
.+|++|||++++|...+. .+.+.+.++... .+.+.|++|+
T Consensus 176 -~llllDEPt~~LD~~~~~-~l~~~l~~l~~~---~g~tvi~vtH 215 (529)
T PRK15134 176 -ELLIADEPTTALDVSVQA-QILQLLRELQQE---LNMGLLFITH 215 (529)
T ss_pred -CEEEEcCCCCccCHHHHH-HHHHHHHHHHHh---cCCeEEEEcC
Confidence 567799999999987754 344456555321 2567788887
No 294
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.50 E-value=6.5e-14 Score=158.15 Aligned_cols=206 Identities=11% Similarity=0.057 Sum_probs=133.5
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEe-ecc---cCCcc--HHHHHHHHHhhhcccC-
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIA-ACD---TFRAG--AVEQLRTHVRHLCSLH- 469 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~-~~D---t~R~g--a~eQLr~~~~~l~~~~- 469 (630)
.+|++++|.+.+| ++++|+|||||||||+++.|++.+.+..|+|.+. +.+ ..+.. ....++....++.+..
T Consensus 298 ~il~~is~~i~~G--e~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~~~~~~~~~~~i~~v~q~~~ 375 (520)
T TIGR03269 298 KAVDNVSLEVKEG--EIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPDGRGRAKRYIGILHQEYD 375 (520)
T ss_pred eEEeeEEEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccccccchhhHHHHhhhEEEEccCcc
Confidence 4899999999999 9999999999999999999999999999999985 432 21111 1112333344555432
Q ss_pred CCcCCcchhhhHhhhccCCCCHH---HHHHHHHHHhhhcC------CCeeeeccccchhchHHHHHHHHhhhhhcCCCeE
Q psy11993 470 PAAKHGGREMVQLFEKGYGKDPA---EIAFRAISHARDMH------IDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLL 540 (630)
Q Consensus 470 ~~~~~tv~env~l~~~~~~~d~~---~ia~~ai~~a~~~~------~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~V 540 (630)
.++.+|+.+|+.+.... ..... ..+.++++.+.... .+..+-..|||++++..++++|. .+| .+
T Consensus 376 l~~~~tv~e~l~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LSgGq~qrv~laral~-----~~p-~l 448 (520)
T TIGR03269 376 LYPHRTVLDNLTEAIGL-ELPDELARMKAVITLKMVGFDEEKAEEILDKYPDELSEGERHRVALAQVLI-----KEP-RI 448 (520)
T ss_pred cCCCCcHHHHHHHHHHc-CCCHHHHHHHHHHHHHhCCCCCccchhhhhCChhhCCHHHHHHHHHHHHHh-----cCC-CE
Confidence 25568999999763211 11111 12333444433322 23446678999999999999999 788 56
Q ss_pred EEEeccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcccCCcCccHHHHHHHHHHhCCcEEEEecCCCCccCCCCC
Q psy11993 541 LFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGTGQTYTDLKSLN 620 (630)
Q Consensus 541 LlV~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK~D~~~~~~G~~ls~~~~~g~PI~fvg~Gq~v~DL~~~~ 620 (630)
|++|||++++|...+ ..+.+.+.++.. ..+.+.|++|+- .-.+. ...-.|.++..|+-+.+ -.
T Consensus 449 LllDEPt~~LD~~~~-~~l~~~l~~l~~---~~g~tvi~vsHd------~~~~~----~~~d~i~~l~~G~i~~~---g~ 511 (520)
T TIGR03269 449 VILDEPTGTMDPITK-VDVTHSILKARE---EMEQTFIIVSHD------MDFVL----DVCDRAALMRDGKIVKI---GD 511 (520)
T ss_pred EEEeCCcccCCHHHH-HHHHHHHHHHHH---HcCcEEEEEeCC------HHHHH----HhCCEEEEEECCEEEEE---CC
Confidence 779999999998765 344555655432 125778888871 11122 22335777877765432 24
Q ss_pred HHHHHHHh
Q psy11993 621 AKAVVNAL 628 (630)
Q Consensus 621 ~~~~v~~L 628 (630)
++.+.+.|
T Consensus 512 ~~~~~~~~ 519 (520)
T TIGR03269 512 PEEIVEEL 519 (520)
T ss_pred HHHHHhhc
Confidence 55555443
No 295
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.50 E-value=5.5e-14 Score=155.62 Aligned_cols=168 Identities=22% Similarity=0.213 Sum_probs=131.6
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccCCCcCCcc
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHPAAKHGG 476 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~~~~~tv 476 (630)
.++++++|++++| +.++|||++||||||++..|++++.+..|.|.+.+.|. +.-..+.++.++.++++.+.....|+
T Consensus 335 ~~l~~l~~t~~~g--~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l-~~l~~~~~~k~i~~v~Q~p~lf~gTi 411 (559)
T COG4988 335 PALSDLNLTIKAG--QLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDL-RDLSPEAWRKQISWVSQNPYLFAGTI 411 (559)
T ss_pred cccCCceeEecCC--cEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccc-cccCHHHHHhHeeeeCCCCccccccH
Confidence 6899999999999 99999999999999999999999999999999999987 44445688899999999888889999
Q ss_pred hhhhHhhhccCCCCHHHHHHHHHHHhh-------hcCCCeeeec----cccchhchHHHHHHHHhhhhhcCCCeEEEEec
Q psy11993 477 REMVQLFEKGYGKDPAEIAFRAISHAR-------DMHIDVVLID----TAGRMQDNEPLMRALAKLVKVNQPDLLLFVGE 545 (630)
Q Consensus 477 ~env~l~~~~~~~d~~~ia~~ai~~a~-------~~~~D~vlID----TaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E 545 (630)
++|+.++... .+..+ ..++++.+. ..++|.++-| .|||+.++..++|+|. .++ .+++.||
T Consensus 412 reNi~l~~~~--~s~e~-i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLARAll-----~~~-~l~llDE 482 (559)
T COG4988 412 RENILLARPD--ASDEE-IIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALL-----SPA-SLLLLDE 482 (559)
T ss_pred HHHhhccCCc--CCHHH-HHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHHHHHHHhc-----CCC-CEEEecC
Confidence 9999887532 22222 223333322 1367888888 7999999999999998 554 5777999
Q ss_pred cccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 546 ALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 546 ~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
||+++|+..... ..+.+.+.++ .-+.+++|+
T Consensus 483 pTA~LD~etE~~-i~~~l~~l~~-----~ktvl~itH 513 (559)
T COG4988 483 PTAHLDAETEQI-ILQALQELAK-----QKTVLVITH 513 (559)
T ss_pred CccCCCHhHHHH-HHHHHHHHHh-----CCeEEEEEc
Confidence 999999866533 3334444443 467888898
No 296
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=99.50 E-value=4.7e-14 Score=144.41 Aligned_cols=172 Identities=15% Similarity=0.085 Sum_probs=112.9
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHH--HHhcCCeEEEeecccCCccHHHHHHH-HHhhhcccC-CCc
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFW--LIENNLNVLIAACDTFRAGAVEQLRT-HVRHLCSLH-PAA 472 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~--l~~~ggkVlI~~~Dt~R~ga~eQLr~-~~~~l~~~~-~~~ 472 (630)
.+|++++|.+.+| ++++|+|+||+||||++..|++. +.+..|+|.+.+.+..+.... ..+. ...++.+.. .++
T Consensus 21 ~~l~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~-~~~~~~~~~~~q~~~~~~ 97 (252)
T CHL00131 21 EILKGLNLSINKG--EIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPE-ERAHLGIFLAFQYPIEIP 97 (252)
T ss_pred EeeecceeEEcCC--cEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChh-hhheeeEEEEeccccccc
Confidence 4899999999999 99999999999999999999997 467899999988876443321 1111 112222222 244
Q ss_pred CCcchhhhHhhhccC----C---CCHHH---HHHHHHHHhhhc--CCCeeee-ccccchhchHHHHHHHHhhhhhcCCCe
Q psy11993 473 KHGGREMVQLFEKGY----G---KDPAE---IAFRAISHARDM--HIDVVLI-DTAGRMQDNEPLMRALAKLVKVNQPDL 539 (630)
Q Consensus 473 ~~tv~env~l~~~~~----~---~d~~~---ia~~ai~~a~~~--~~D~vlI-DTaGr~~~~~~L~~aL~kl~~~~~Pd~ 539 (630)
.+++.+++.+....+ . .+... .+.++++.+... ..+..+. ..||+++++..++++|. .+| .
T Consensus 98 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~-----~~p-~ 171 (252)
T CHL00131 98 GVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVNEGFSGGEKKRNEILQMAL-----LDS-E 171 (252)
T ss_pred cccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccccCCCHHHHHHHHHHHHHH-----cCC-C
Confidence 567778776532211 0 11111 122333333222 1233354 48999999999999999 888 5
Q ss_pred EEEEeccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 540 LLFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 540 VLlV~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
++++|||+.|+|...+. .+.+.+.++.. .+.+.|++|+
T Consensus 172 llllDEPt~~LD~~~~~-~l~~~l~~~~~----~g~tii~~tH 209 (252)
T CHL00131 172 LAILDETDSGLDIDALK-IIAEGINKLMT----SENSIILITH 209 (252)
T ss_pred EEEEcCCcccCCHHHHH-HHHHHHHHHHh----CCCEEEEEec
Confidence 66689999999987653 44555655532 2466778887
No 297
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.50 E-value=4.1e-14 Score=140.37 Aligned_cols=156 Identities=18% Similarity=0.096 Sum_probs=106.5
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccCCCcCCcc
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHPAAKHGG 476 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~~~~~tv 476 (630)
.+|++++|.+++| ++++|+||||+||||+++.|++.+.+..|+|.+.+ + ..++.+.......|+
T Consensus 19 ~il~~~s~~i~~G--~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g----~----------i~~~~q~~~l~~~t~ 82 (204)
T cd03250 19 FTLKDINLEVPKG--ELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG----S----------IAYVSQEPWIQNGTI 82 (204)
T ss_pred ceeeeeeEEECCC--CEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC----E----------EEEEecCchhccCcH
Confidence 4899999999999 99999999999999999999999999999999876 1 223333322335688
Q ss_pred hhhhHhhhccCCCCHHHHHHHHHHH------hhhc--CC----CeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEe
Q psy11993 477 REMVQLFEKGYGKDPAEIAFRAISH------ARDM--HI----DVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVG 544 (630)
Q Consensus 477 ~env~l~~~~~~~d~~~ia~~ai~~------a~~~--~~----D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~ 544 (630)
.+|+.+.... +... ..++.+. .... ++ +......|++++++..++++|+ .+| .++++|
T Consensus 83 ~enl~~~~~~---~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~-----~~p-~llllD 152 (204)
T cd03250 83 RENILFGKPF---DEER-YEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVY-----SDA-DIYLLD 152 (204)
T ss_pred HHHhccCCCc---CHHH-HHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHh-----cCC-CEEEEe
Confidence 8888764321 1111 1111111 1111 11 2224678999999999999999 788 566699
Q ss_pred ccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 545 EALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 545 E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
||+.++|...+...+...+.++.. .+.+.|++|+
T Consensus 153 EP~~~LD~~~~~~l~~~ll~~~~~----~~~tvi~~sh 186 (204)
T cd03250 153 DPLSAVDAHVGRHIFENCILGLLL----NNKTRILVTH 186 (204)
T ss_pred CccccCCHHHHHHHHHHHHHHhcc----CCCEEEEEeC
Confidence 999999987654333333443332 1467777776
No 298
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.50 E-value=4.6e-14 Score=147.07 Aligned_cols=166 Identities=13% Similarity=0.074 Sum_probs=116.3
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccCCCcCCcc
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHPAAKHGG 476 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~~~~~tv 476 (630)
.+|++++|.+.+| ++++|+|+||+||||+++.|++++. ..|+|.+.+.|+.+.... .++....++.+...+...|+
T Consensus 18 ~~l~~isl~I~~G--e~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~-~lr~~i~~v~q~~~lf~~tv 93 (275)
T cd03289 18 AVLENISFSISPG--QRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQ-KWRKAFGVIPQKVFIFSGTF 93 (275)
T ss_pred cceeceEEEEcCC--CEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHH-HHhhhEEEECCCcccchhhH
Confidence 4899999999999 9999999999999999999999997 789999999888554433 44555566665544445699
Q ss_pred hhhhHhhhccCCCCHHHHHHHHHHHhhhc--------CCCeeee----ccccchhchHHHHHHHHhhhhhcCCCeEEEEe
Q psy11993 477 REMVQLFEKGYGKDPAEIAFRAISHARDM--------HIDVVLI----DTAGRMQDNEPLMRALAKLVKVNQPDLLLFVG 544 (630)
Q Consensus 477 ~env~l~~~~~~~d~~~ia~~ai~~a~~~--------~~D~vlI----DTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~ 544 (630)
++|+..+.. .... .+.++++.+... +++..+. ..||+++++..++++|. .+| .++++|
T Consensus 94 ~~nl~~~~~---~~~~-~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall-----~~p-~illlD 163 (275)
T cd03289 94 RKNLDPYGK---WSDE-EIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVL-----SKA-KILLLD 163 (275)
T ss_pred HHHhhhccC---CCHH-HHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHh-----cCC-CEEEEE
Confidence 999964421 1222 222333322211 1222222 27999999999999999 788 566699
Q ss_pred ccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 545 EALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 545 E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
||+.++|.... ..+.+.+.... .+.+.|++|+
T Consensus 164 Epts~LD~~~~-~~l~~~l~~~~-----~~~tii~isH 195 (275)
T cd03289 164 EPSAHLDPITY-QVIRKTLKQAF-----ADCTVILSEH 195 (275)
T ss_pred CccccCCHHHH-HHHHHHHHHhc-----CCCEEEEEEC
Confidence 99999998765 45555565432 1466677776
No 299
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.50 E-value=7.6e-14 Score=157.94 Aligned_cols=194 Identities=10% Similarity=0.115 Sum_probs=129.9
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHH--HHHHHHhhhcccC---CC
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVE--QLRTHVRHLCSLH---PA 471 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~e--QLr~~~~~l~~~~---~~ 471 (630)
.+|++++|.+.+| ++++|+|||||||||+++.|++++ +..|+|.+.+.++......+ .++....++.+.. .+
T Consensus 300 ~il~~isl~i~~G--e~~~i~G~nGsGKSTLlk~l~Gl~-~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~l~ 376 (529)
T PRK15134 300 VVVKNISFTLRPG--ETLGLVGESGSGKSTTGLALLRLI-NSQGEIWFDGQPLHNLNRRQLLPVRHRIQVVFQDPNSSLN 376 (529)
T ss_pred eeeecceeEEcCC--CEEEEECCCCCCHHHHHHHHhCcC-CCCcEEEECCEEccccchhhHHHhhhceEEEEeCchhhcC
Confidence 4899999999999 999999999999999999999998 48899999988764432211 2233344454442 24
Q ss_pred cCCcchhhhHhhhccCC--CCHH---HHHHHHHHHhhhc--CCCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEe
Q psy11993 472 AKHGGREMVQLFEKGYG--KDPA---EIAFRAISHARDM--HIDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVG 544 (630)
Q Consensus 472 ~~~tv~env~l~~~~~~--~d~~---~ia~~ai~~a~~~--~~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~ 544 (630)
+.+|+.+|+.+....+. .+.. ..+.++++.+... ..+..+-..|||++++..++++|. .+| .+|++|
T Consensus 377 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~-----~~p-~llllD 450 (529)
T PRK15134 377 PRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHRYPAEFSGGQRQRIAIARALI-----LKP-SLIILD 450 (529)
T ss_pred CcccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHHHHhcCCccCCHHHHHHHHHHHHHh-----CCC-CEEEee
Confidence 56899999976432221 1222 2233444443332 124456788999999999999999 788 567799
Q ss_pred ccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcccCCcCccHHHHHHHHHHhCCcEEEEecCCCC
Q psy11993 545 EALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGTGQTY 613 (630)
Q Consensus 545 E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK~D~~~~~~G~~ls~~~~~g~PI~fvg~Gq~v 613 (630)
||+.++|...+.. +.+.+.++... .+.+.|++|+ | ...+..+ .-.|.++..|+-+
T Consensus 451 EPt~~LD~~~~~~-l~~~l~~~~~~---~~~tvi~vsH-d-----~~~~~~~----~d~i~~l~~G~i~ 505 (529)
T PRK15134 451 EPTSSLDKTVQAQ-ILALLKSLQQK---HQLAYLFISH-D-----LHVVRAL----CHQVIVLRQGEVV 505 (529)
T ss_pred CCccccCHHHHHH-HHHHHHHHHHh---hCCEEEEEeC-C-----HHHHHHh----cCeEEEEECCEEE
Confidence 9999999887643 34455555421 2567788887 1 2222222 2357777777643
No 300
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=99.50 E-value=1.2e-13 Score=149.90 Aligned_cols=175 Identities=20% Similarity=0.156 Sum_probs=137.2
Q ss_pred CCCcchhhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccCC
Q psy11993 391 SPKRRVDILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHP 470 (630)
Q Consensus 391 ~~~~~~~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~ 470 (630)
.|.....+|++|+|.+..| +.++||||+|+||||+.+.|.+...|..|.|.+.+.|.++.. .|+|-.|++|++|..+
T Consensus 344 PPg~~~pil~~isF~l~~G--~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd-~e~lG~hiGYLPQdVe 420 (580)
T COG4618 344 PPGQKKPILKGISFALQAG--EALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWD-REQLGRHIGYLPQDVE 420 (580)
T ss_pred CCCCCCcceecceeEecCC--ceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhcCC-HHHhccccCcCcccce
Confidence 3555668999999999999 999999999999999999999999999999999999997765 5799999999999999
Q ss_pred CcCCcchhhhHhhhccCCCCHHHHHHHH--------HHHhhhcCCCeeeecc----ccchhchHHHHHHHHhhhhhcCCC
Q psy11993 471 AAKHGGREMVQLFEKGYGKDPAEIAFRA--------ISHARDMHIDVVLIDT----AGRMQDNEPLMRALAKLVKVNQPD 538 (630)
Q Consensus 471 ~~~~tv~env~l~~~~~~~d~~~ia~~a--------i~~a~~~~~D~vlIDT----aGr~~~~~~L~~aL~kl~~~~~Pd 538 (630)
.+..|+.+||.=+.. ..|+..+...| +-.+ -.+||..+-|. ||++.|+..|+|+|- .+|.
T Consensus 421 LF~GTIaeNIaRf~~--~~d~~kIieAA~lAgvHelIl~l-P~GYdT~iG~~G~~LSgGQRQRIaLARAlY-----G~P~ 492 (580)
T COG4618 421 LFDGTIAENIARFGE--EADPEKVIEAARLAGVHELILRL-PQGYDTRIGEGGATLSGGQRQRIALARALY-----GDPF 492 (580)
T ss_pred ecCCcHHHHHHhccc--cCCHHHHHHHHHHcChHHHHHhC-cCCccCccCCCCCCCCchHHHHHHHHHHHc-----CCCc
Confidence 889999999976542 24454443222 1111 24788887764 899999999999998 8895
Q ss_pred eEEEEeccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 539 LLLFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 539 ~VLlV~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
++++|||.+.+|......- ..++.... .++.+.|++|+
T Consensus 493 -lvVLDEPNsNLD~~GE~AL-~~Ai~~~k----~rG~~vvviaH 530 (580)
T COG4618 493 -LVVLDEPNSNLDSEGEAAL-AAAILAAK----ARGGTVVVIAH 530 (580)
T ss_pred -EEEecCCCCCcchhHHHHH-HHHHHHHH----HcCCEEEEEec
Confidence 4559999999997765433 33333332 35788888886
No 301
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.50 E-value=1.1e-13 Score=143.14 Aligned_cols=172 Identities=16% Similarity=0.118 Sum_probs=115.0
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHh-----cCCeEEEeecccCC--cc-HHHHHHHHHhhhccc
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIE-----NNLNVLIAACDTFR--AG-AVEQLRTHVRHLCSL 468 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~-----~ggkVlI~~~Dt~R--~g-a~eQLr~~~~~l~~~ 468 (630)
.+|++++|.+.+| ++++|+|+||+||||+++.|++.+.+ ..|+|.+.+.+... .. ....++....++.+.
T Consensus 30 ~vl~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~ 107 (265)
T PRK14252 30 QALKNINMMVHEK--QVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPEVDPIEVRMRISMVFQK 107 (265)
T ss_pred eeeeeeEEEEcCC--cEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccccccccCHHHHhccEEEEccC
Confidence 4899999999999 99999999999999999999998874 67899997755421 10 112233334445443
Q ss_pred CCCcCCcchhhhHhhhccCCCCH----HHHHHHHHHHhhhc-----CCCeeeeccccchhchHHHHHHHHhhhhhcCCCe
Q psy11993 469 HPAAKHGGREMVQLFEKGYGKDP----AEIAFRAISHARDM-----HIDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDL 539 (630)
Q Consensus 469 ~~~~~~tv~env~l~~~~~~~d~----~~ia~~ai~~a~~~-----~~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~ 539 (630)
......|+.+|+.+.....+... .+....+++.+... ..+..+...||+++++..++++|. .+| .
T Consensus 108 ~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~-----~~p-~ 181 (265)
T PRK14252 108 PNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVKDRLGDLAFNLSGGQQQRLCIARALA-----TDP-E 181 (265)
T ss_pred CcCCcchHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhhHHHhCCcccCCHHHHHHHHHHHHHH-----cCC-C
Confidence 33233589999976432222111 12223333333221 123446778999999999999999 788 5
Q ss_pred EEEEeccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 540 LLFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 540 VLlV~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
++++|||+.|+|.... ..+.+.+.++.. ..+.+++|+
T Consensus 182 llllDEPt~gLD~~~~-~~l~~~l~~l~~-----~~tiiivth 218 (265)
T PRK14252 182 ILLFDEPTSALDPIAT-ASIEELISDLKN-----KVTILIVTH 218 (265)
T ss_pred EEEEeCCCccCCHHHH-HHHHHHHHHHHh-----CCEEEEEec
Confidence 6669999999998764 455566665542 356677776
No 302
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.50 E-value=6.2e-14 Score=175.90 Aligned_cols=170 Identities=16% Similarity=0.107 Sum_probs=124.9
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccCC-CcCCc
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHP-AAKHG 475 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~-~~~~t 475 (630)
.+|+++++.+.+| ++++|+||||+||||++++|+|.+.|+.|+|.+.+.|+.+ ....+|....++.+... ++.+|
T Consensus 944 ~aL~~lsl~I~~G--ei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~--~~~~~r~~IG~~pQ~~~L~~~LT 1019 (2272)
T TIGR01257 944 PAVDRLNITFYEN--QITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIET--NLDAVRQSLGMCPQHNILFHHLT 1019 (2272)
T ss_pred eEEEeeEEEEcCC--cEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcc--hHHHHhhcEEEEecCCcCCCCCC
Confidence 4899999999999 9999999999999999999999999999999999988743 12234444445544332 56799
Q ss_pred chhhhHhhhccCCCCHHHH---HHHHHHHhhhcC-CCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCcc
Q psy11993 476 GREMVQLFEKGYGKDPAEI---AFRAISHARDMH-IDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNE 551 (630)
Q Consensus 476 v~env~l~~~~~~~d~~~i---a~~ai~~a~~~~-~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~D 551 (630)
+++|+.++...++....+. +.+.++.+...+ .+..+-..|||++++..++++|. .+| .++++|||++|+|
T Consensus 1020 V~E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqKQRLsLArALi-----~~P-kVLLLDEPTSGLD 1093 (2272)
T TIGR01257 1020 VAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFV-----GDA-KVVVLDEPTSGVD 1093 (2272)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHH-----cCC-CEEEEECCCcCCC
Confidence 9999998765554433222 233343333322 24456778999999999999999 888 5666999999999
Q ss_pred HHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 552 AVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 552 av~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
...+. .+.+.+.++.. +.+.|+.|+
T Consensus 1094 p~sr~-~l~~lL~~l~~-----g~TIIltTH 1118 (2272)
T TIGR01257 1094 PYSRR-SIWDLLLKYRS-----GRTIIMSTH 1118 (2272)
T ss_pred HHHHH-HHHHHHHHHhC-----CCEEEEEEC
Confidence 88764 44556666532 456777777
No 303
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=99.49 E-value=6.4e-14 Score=159.57 Aligned_cols=169 Identities=18% Similarity=0.158 Sum_probs=129.0
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccCCCcCCcc
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHPAAKHGG 476 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~~~~~tv 476 (630)
.+|+++++.+++| +.++|+|+||+||||+++.|++++.+..|+|.+.+.|.-... .+.++.+..++++.+..+..|+
T Consensus 346 ~il~~inl~i~~G--~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~-~~~~~~~i~~v~Q~~~lf~~Ti 422 (571)
T TIGR02203 346 PALDSISLVIEPG--ETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYT-LASLRRQVALVSQDVVLFNDTI 422 (571)
T ss_pred ccccCeeEEecCC--CEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcC-HHHHHhhceEEccCcccccccH
Confidence 4899999999999 999999999999999999999999999999999998874443 3467778888888888888999
Q ss_pred hhhhHhhhccCCCCHHHHHHHHHHHhh--------hcCCCeeeec----cccchhchHHHHHHHHhhhhhcCCCeEEEEe
Q psy11993 477 REMVQLFEKGYGKDPAEIAFRAISHAR--------DMHIDVVLID----TAGRMQDNEPLMRALAKLVKVNQPDLLLFVG 544 (630)
Q Consensus 477 ~env~l~~~~~~~d~~~ia~~ai~~a~--------~~~~D~vlID----TaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~ 544 (630)
++|+.++... ..+..+ ..++++.+. ..++|..+.+ .|||++|+..++|++. .+| .++++|
T Consensus 423 ~~Ni~~~~~~-~~~~~~-i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLARall-----~~~-~illLD 494 (571)
T TIGR02203 423 ANNIAYGRTE-QADRAE-IERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALL-----KDA-PILILD 494 (571)
T ss_pred HHHHhcCCCC-CCCHHH-HHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHh-----cCC-CEEEEe
Confidence 9999876421 122222 222333221 1356766543 5999999999999999 777 577799
Q ss_pred ccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 545 EALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 545 E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
||++++|...... +.+.+.++.. +.+.|++|+
T Consensus 495 Epts~LD~~~~~~-i~~~L~~~~~-----~~tiIiitH 526 (571)
T TIGR02203 495 EATSALDNESERL-VQAALERLMQ-----GRTTLVIAH 526 (571)
T ss_pred CccccCCHHHHHH-HHHHHHHHhC-----CCEEEEEeh
Confidence 9999999887643 4555555432 467889987
No 304
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.49 E-value=7.7e-14 Score=156.40 Aligned_cols=167 Identities=17% Similarity=0.071 Sum_probs=113.2
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccCCC-----
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHPA----- 471 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~~----- 471 (630)
.+|++++|.+.+| ++++|+|||||||||+++.|++.+.+..|.|.+.+.+....... .++.+..++.+....
T Consensus 17 ~il~~vsl~i~~G--e~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~-~~~~~i~~~~q~~~~~~~~~ 93 (490)
T PRK10938 17 KTLQLPSLTLNAG--DSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFE-QLQKLVSDEWQRNNTDMLSP 93 (490)
T ss_pred eecccceEEEcCC--CEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHH-HHHHHhceeccCcchhhccc
Confidence 4899999999999 99999999999999999999999999999998877665332222 223333333332111
Q ss_pred ----cCCcchhhhHhhhccCCCCHHHHHHHHHHHhhhcC-CCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEecc
Q psy11993 472 ----AKHGGREMVQLFEKGYGKDPAEIAFRAISHARDMH-IDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEA 546 (630)
Q Consensus 472 ----~~~tv~env~l~~~~~~~d~~~ia~~ai~~a~~~~-~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~ 546 (630)
..+++.+++... ......+.++++.+.... .+..+-+.|||++++..++++|. .+| .+|++|||
T Consensus 94 ~~~~~~~~~~~~~~~~-----~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~-----~~p-~lllLDEP 162 (490)
T PRK10938 94 GEDDTGRTTAEIIQDE-----VKDPARCEQLAQQFGITALLDRRFKYLSTGETRKTLLCQALM-----SEP-DLLILDEP 162 (490)
T ss_pred chhhccccHHHhcccc-----hhHHHHHHHHHHHcCCHhhhhCCcccCCHHHHHHHHHHHHHH-----cCC-CEEEEcCC
Confidence 023455544321 111222334444443322 24557788999999999999999 788 56779999
Q ss_pred ccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 547 LVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 547 ~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
++++|...+ ..+.+.+.++.. .+.+.|++|+
T Consensus 163 t~~LD~~~~-~~l~~~l~~~~~----~g~tvii~tH 193 (490)
T PRK10938 163 FDGLDVASR-QQLAELLASLHQ----SGITLVLVLN 193 (490)
T ss_pred cccCCHHHH-HHHHHHHHHHHh----cCCeEEEEeC
Confidence 999998765 445556666543 1466777776
No 305
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=99.49 E-value=3.5e-14 Score=147.43 Aligned_cols=169 Identities=18% Similarity=0.125 Sum_probs=111.6
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccCCC---cC
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHPA---AK 473 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~~---~~ 473 (630)
.+|++++|.+.+| ++++|+||||+||||+++.|++.+.+..|+|.+.+.+..+ ...+....++.+.... ..
T Consensus 21 ~il~~vsl~i~~G--e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~----~~~~~~i~~v~q~~~~~~~~~ 94 (272)
T PRK15056 21 TALRDASFTVPGG--SIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQ----ALQKNLVAYVPQSEEVDWSFP 94 (272)
T ss_pred EEEEeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHH----hhccceEEEeccccccccCCC
Confidence 4789999999999 9999999999999999999999999999999998877521 0111122333332211 12
Q ss_pred CcchhhhHhhhc----cCC-C--CHHHHHHHHHHHhhhcC-CCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEec
Q psy11993 474 HGGREMVQLFEK----GYG-K--DPAEIAFRAISHARDMH-IDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGE 545 (630)
Q Consensus 474 ~tv~env~l~~~----~~~-~--d~~~ia~~ai~~a~~~~-~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E 545 (630)
.++.+++.+... ... . .....+..+++.+.... .+..+.+.||+++++..++++|. .+| .++++||
T Consensus 95 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~laraL~-----~~p-~llllDE 168 (272)
T PRK15056 95 VLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIGELSGGQKKRVFLARAIA-----QQG-QVILLDE 168 (272)
T ss_pred cchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHh-----cCC-CEEEEeC
Confidence 345666543110 000 1 11122333444333221 24456788999999999999999 788 5666999
Q ss_pred cccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 546 ALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 546 ~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
|+.|+|...+. .+.+.+.++.. .+.+.|++|+
T Consensus 169 Pt~~LD~~~~~-~l~~~L~~~~~----~g~tviivsH 200 (272)
T PRK15056 169 PFTGVDVKTEA-RIISLLRELRD----EGKTMLVSTH 200 (272)
T ss_pred CCccCCHHHHH-HHHHHHHHHHh----CCCEEEEEeC
Confidence 99999987653 45556665542 2466777776
No 306
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.49 E-value=6.6e-14 Score=174.04 Aligned_cols=170 Identities=17% Similarity=0.140 Sum_probs=131.0
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHh---------------------------------------
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIE--------------------------------------- 437 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~--------------------------------------- 437 (630)
.+|++++|.+++| ++++||||+||||||+++.|++++.|
T Consensus 1182 ~vL~~lsl~i~~G--~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1259 (1466)
T PTZ00265 1182 PIYKDLTFSCDSK--KTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFS 1259 (1466)
T ss_pred ccccCeeEEEcCC--CEEEEECCCCCCHHHHHHHHHHhCCCccccccccccccccccccccccccccccccccccccccc
Confidence 5899999999999 99999999999999999999999987
Q ss_pred ---------------cCCeEEEeecccCCccHHHHHHHHHhhhcccCCCcCCcchhhhHhhhccCCCCHHHHHHHHHHHh
Q psy11993 438 ---------------NNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHPAAKHGGREMVQLFEKGYGKDPAEIAFRAISHA 502 (630)
Q Consensus 438 ---------------~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~~~~~tv~env~l~~~~~~~d~~~ia~~ai~~a 502 (630)
+.|+|+|.+.|+.... ...||.+..+++|.+..+..|+++||.+.... ....+ ..+|++.+
T Consensus 1260 ~~~~~~~~~~~~~~~~~G~I~idG~di~~~~-~~~lR~~i~~V~Qep~LF~gTIreNI~~g~~~--at~ee-I~~A~k~A 1335 (1466)
T PTZ00265 1260 LTKEGGSGEDSTVFKNSGKILLDGVDICDYN-LKDLRNLFSIVSQEPMLFNMSIYENIKFGKED--ATRED-VKRACKFA 1335 (1466)
T ss_pred cccccccccccccCCCCCeEEECCEEHHhCC-HHHHHhhccEeCCCCccccccHHHHHhcCCCC--CCHHH-HHHHHHHc
Confidence 5899999999984443 56789999999998888899999999886321 22222 23333332
Q ss_pred hh--------cCCCeeeec----cccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCccHHHHHHHHHHHHhhcccCC
Q psy11993 503 RD--------MHIDVVLID----TAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQLVKFNNAMADHSLSD 570 (630)
Q Consensus 503 ~~--------~~~D~vlID----TaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~Dav~ql~~f~~~l~~~~~~~ 570 (630)
.. .+||..+.+ .|||+.|+..|+|+|. .+| .+|++|||++++|.... +.+.+.+.+...
T Consensus 1336 ~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALl-----r~p-~ILLLDEaTSaLD~~sE-~~I~~~L~~~~~-- 1406 (1466)
T PTZ00265 1336 AIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALL-----REP-KILLLDEATSSLDSNSE-KLIEKTIVDIKD-- 1406 (1466)
T ss_pred CCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHh-----cCC-CEEEEeCcccccCHHHH-HHHHHHHHHHhc--
Confidence 21 356776643 6999999999999999 788 67779999999998764 344555654421
Q ss_pred CCCCeeEEEEcc
Q psy11993 571 NPHLIDGIVLTK 582 (630)
Q Consensus 571 ~~~~i~gIIlTK 582 (630)
..+.+.|++|+
T Consensus 1407 -~~~~TvIiIaH 1417 (1466)
T PTZ00265 1407 -KADKTIITIAH 1417 (1466)
T ss_pred -cCCCEEEEEec
Confidence 12567888887
No 307
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.49 E-value=5.7e-14 Score=160.33 Aligned_cols=169 Identities=15% Similarity=0.120 Sum_probs=124.2
Q ss_pred hhhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccCCCcCCc
Q psy11993 396 VDILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHPAAKHG 475 (630)
Q Consensus 396 ~~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~~~~~t 475 (630)
..+|+++++.+++| +.++|+||||+||||+++.|++++.|+.|+|.+.+.|..... ...++....++++.+.....|
T Consensus 328 ~~~l~~i~~~i~~G--~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~-~~~~~~~i~~v~q~~~lf~~t 404 (569)
T PRK10789 328 HPALENVNFTLKPG--QMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQ-LDSWRSRLAVVSQTPFLFSDT 404 (569)
T ss_pred CccccCeeEEECCC--CEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCC-HHHHHhheEEEccCCeecccc
Confidence 35899999999999 999999999999999999999999999999999988764332 346677777777766666789
Q ss_pred chhhhHhhhccCCCCHHHHHHHHHHHhh--------hcCCCeee----eccccchhchHHHHHHHHhhhhhcCCCeEEEE
Q psy11993 476 GREMVQLFEKGYGKDPAEIAFRAISHAR--------DMHIDVVL----IDTAGRMQDNEPLMRALAKLVKVNQPDLLLFV 543 (630)
Q Consensus 476 v~env~l~~~~~~~d~~~ia~~ai~~a~--------~~~~D~vl----IDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV 543 (630)
+++|+.+..... +..++ ..+++.+. -.++|..+ ...|||++++..++|+|. .+| .++++
T Consensus 405 i~~Ni~~~~~~~--~~~~~-~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall-----~~~-~illl 475 (569)
T PRK10789 405 VANNIALGRPDA--TQQEI-EHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALL-----LNA-EILIL 475 (569)
T ss_pred HHHHHhcCCCCC--CHHHH-HHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHh-----cCC-CEEEE
Confidence 999998753221 22222 22322221 12455543 347999999999999999 788 56669
Q ss_pred eccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 544 GEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 544 ~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
|||++++|..... .+.+.+.++.. +.+.|++|+
T Consensus 476 DEpts~LD~~~~~-~i~~~l~~~~~-----~~tii~itH 508 (569)
T PRK10789 476 DDALSAVDGRTEH-QILHNLRQWGE-----GRTVIISAH 508 (569)
T ss_pred ECccccCCHHHHH-HHHHHHHHHhC-----CCEEEEEec
Confidence 9999999987654 44445655432 467788886
No 308
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=99.49 E-value=4.8e-14 Score=135.91 Aligned_cols=132 Identities=17% Similarity=0.084 Sum_probs=99.0
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccCCCcCCcc
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHPAAKHGG 476 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~~~~~tv 476 (630)
.+|++++|.+.+| ++++|+||||+||||+++.|++.+.+..|+|.+.+. ....++.+.......|+
T Consensus 15 ~~l~~i~l~i~~G--e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~------------~~i~~~~q~~~~~~~tv 80 (166)
T cd03223 15 VLLKDLSFEIKPG--DRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEG------------EDLLFLPQRPYLPLGTL 80 (166)
T ss_pred eeeecCeEEECCC--CEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCC------------ceEEEECCCCccccccH
Confidence 4789999999999 999999999999999999999999999999987542 11223333222234566
Q ss_pred hhhhHhhhccCCCCHHHHHHHHHHHhhhcCCCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCccHHHHH
Q psy11993 477 REMVQLFEKGYGKDPAEIAFRAISHARDMHIDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQL 556 (630)
Q Consensus 477 ~env~l~~~~~~~d~~~ia~~ai~~a~~~~~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~Dav~ql 556 (630)
.+|+.+. .....||+++++..++++|. .+| .++++|||+.++|...+.
T Consensus 81 ~~nl~~~--------------------------~~~~LS~G~~~rv~laral~-----~~p-~~lllDEPt~~LD~~~~~ 128 (166)
T cd03223 81 REQLIYP--------------------------WDDVLSGGEQQRLAFARLLL-----HKP-KFVFLDEATSALDEESED 128 (166)
T ss_pred HHHhhcc--------------------------CCCCCCHHHHHHHHHHHHHH-----cCC-CEEEEECCccccCHHHHH
Confidence 6666431 23578999999999999999 788 566699999999987654
Q ss_pred HHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 557 VKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 557 ~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
.+.+.+.++ ..+.+++|+
T Consensus 129 -~l~~~l~~~-------~~tiiivsh 146 (166)
T cd03223 129 -RLYQLLKEL-------GITVISVGH 146 (166)
T ss_pred -HHHHHHHHh-------CCEEEEEeC
Confidence 444555433 356777776
No 309
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.49 E-value=6.8e-14 Score=156.89 Aligned_cols=173 Identities=13% Similarity=0.078 Sum_probs=116.4
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccC----CCc
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLH----PAA 472 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~----~~~ 472 (630)
.+|++++|.+.+| ++++|+|||||||||+++.|++.+.+..|+|.+.+.++.+......++....++.+.. .++
T Consensus 262 ~~l~~vsl~i~~G--e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~~~q~~~~~~~~~ 339 (491)
T PRK10982 262 PSIRDVSFDLHKG--EILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAINHGFALVTEERRSTGIYA 339 (491)
T ss_pred cccceeeEEEeCC--cEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCCHHHHHHCCCEEcCCchhhCCccc
Confidence 3789999999999 9999999999999999999999999999999999888754333323333333343321 123
Q ss_pred CCcchhh-----hHhhhccCCC-CH---HHHHHHHHHHhhhc--CCCeeeeccccchhchHHHHHHHHhhhhhcCCCeEE
Q psy11993 473 KHGGREM-----VQLFEKGYGK-DP---AEIAFRAISHARDM--HIDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLL 541 (630)
Q Consensus 473 ~~tv~en-----v~l~~~~~~~-d~---~~ia~~ai~~a~~~--~~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VL 541 (630)
.+++.+| +..+...++. +. ...+.+.++.+... ..+..+-+.|||++++..++++|+ .+| .+|
T Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~-----~~p-~il 413 (491)
T PRK10982 340 YLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQIGSLSGGNQQKVIIGRWLL-----TQP-EIL 413 (491)
T ss_pred CCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCcccccccCCcHHHHHHHHHHHHh-----cCC-CEE
Confidence 3554444 3222111111 11 12233444444332 235667889999999999999999 888 677
Q ss_pred EEeccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 542 FVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 542 lV~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
++|||+.|+|...... +.+.+.++.. .+.+.|++|+
T Consensus 414 lLDEPt~gLD~~~~~~-~~~~l~~l~~----~~~tvi~vsH 449 (491)
T PRK10982 414 MLDEPTRGIDVGAKFE-IYQLIAELAK----KDKGIIIISS 449 (491)
T ss_pred EEcCCCcccChhHHHH-HHHHHHHHHH----CCCEEEEECC
Confidence 7999999999876543 3344544432 2577888887
No 310
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=99.49 E-value=2.3e-13 Score=130.92 Aligned_cols=186 Identities=17% Similarity=0.119 Sum_probs=127.7
Q ss_pred hhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccCC-CcCCcchhhhH
Q psy11993 403 LEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHP-AAKHGGREMVQ 481 (630)
Q Consensus 403 ~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~-~~~~tv~env~ 481 (630)
++.++.| ++++|+||+|+||||+++.||++..|..|.|.|.+.|.-.....+ +-..++.+..- +.++|+.+|+.
T Consensus 19 dl~v~~g--e~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~~---RPVSmlFQEnNLFaHLtV~qNig 93 (231)
T COG3840 19 DLTVPAG--EIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAE---RPVSMLFQENNLFAHLTVAQNIG 93 (231)
T ss_pred EEeecCC--cEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCccc---CChhhhhhccccchhhhhhhhhc
Confidence 4466778 999999999999999999999999999999999999976554432 22334444333 67899999998
Q ss_pred hhhcc-CCCCHH--HHHHHHHHHhhhcCCC-eeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCccHHHHHH
Q psy11993 482 LFEKG-YGKDPA--EIAFRAISHARDMHID-VVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQLV 557 (630)
Q Consensus 482 l~~~~-~~~d~~--~ia~~ai~~a~~~~~D-~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~Dav~ql~ 557 (630)
+.... ...+.. +....+.......+|. ...-..||++.++..|+|.|. .+..|+++|||.+.+|..-...
T Consensus 94 LGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~~LSGGqRQRvALARclv------R~~PilLLDEPFsALdP~LR~e 167 (231)
T COG3840 94 LGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPGELSGGQRQRVALARCLV------REQPILLLDEPFSALDPALRAE 167 (231)
T ss_pred ccCCcccccCHHHHHHHHHHHHHhChhhHhhhCccccCchHHHHHHHHHHHh------ccCCeEEecCchhhcCHHHHHH
Confidence 86432 122322 2334455555555653 456778999999999999997 3345899999999998754333
Q ss_pred HHHHHHhhcccCCCCCCeeEEEEcccCCcCccHHHHHHHHHHhCCcEEEEecCCCC
Q psy11993 558 KFNNAMADHSLSDNPHLIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGTGQTY 613 (630)
Q Consensus 558 ~f~~~l~~~~~~~~~~~i~gIIlTK~D~~~~~~G~~ls~~~~~g~PI~fvg~Gq~v 613 (630)
. ...+.+... .+..+.+++|+-- -.+..++ ..+.|+..|.-.
T Consensus 168 M-l~Lv~~l~~---E~~~TllmVTH~~------~Da~~ia----~~~~fl~~Gri~ 209 (231)
T COG3840 168 M-LALVSQLCD---ERKMTLLMVTHHP------EDAARIA----DRVVFLDNGRIA 209 (231)
T ss_pred H-HHHHHHHHH---hhCCEEEEEeCCH------HHHHHhh----hceEEEeCCEEE
Confidence 2 223333332 3578899999832 2222222 357888888653
No 311
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.48 E-value=9.4e-14 Score=143.00 Aligned_cols=187 Identities=13% Similarity=0.090 Sum_probs=124.1
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccCCCcCCcc
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHPAAKHGG 476 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~~~~~tv 476 (630)
.+|++++|.+.+| ++++|+|+||+||||+++.|++.+.+..|+|.+.+.++.+... ..++....++.+.......|+
T Consensus 35 ~il~~isl~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~-~~~~~~i~~v~q~~~l~~~tv 111 (257)
T cd03288 35 PVLKHVKAYIKPG--QKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPL-HTLRSRLSIILQDPILFSGSI 111 (257)
T ss_pred cceeEEEEEEcCC--CEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCH-HHHhhhEEEECCCCcccccHH
Confidence 4889999999999 9999999999999999999999999999999999887754332 244555555555444444678
Q ss_pred hhhhHhhhccCCCCHHHHHHHHHHH------hhhc--CCCee----eeccccchhchHHHHHHHHhhhhhcCCCeEEEEe
Q psy11993 477 REMVQLFEKGYGKDPAEIAFRAISH------ARDM--HIDVV----LIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVG 544 (630)
Q Consensus 477 ~env~l~~~~~~~d~~~ia~~ai~~------a~~~--~~D~v----lIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~ 544 (630)
.+|+..... ..... ...++.. +... +++.. ....||+++++..++++|. .+| .++++|
T Consensus 112 ~~nl~~~~~---~~~~~-~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~-----~~p-~llllD 181 (257)
T cd03288 112 RFNLDPECK---CTDDR-LWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFV-----RKS-SILIMD 181 (257)
T ss_pred HHhcCcCCC---CCHHH-HHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHh-----cCC-CEEEEe
Confidence 877754211 11111 1111111 1111 22222 3467999999999999999 788 566699
Q ss_pred ccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcccCCcCccHHHHHHHHHHhCCcEEEEecCCCC
Q psy11993 545 EALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGTGQTY 613 (630)
Q Consensus 545 E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK~D~~~~~~G~~ls~~~~~g~PI~fvg~Gq~v 613 (630)
||+.|+|...+ ..+.+.+..... +.+.|++|+-.. .+. . .-.|.++..|+-+
T Consensus 182 EPt~gLD~~~~-~~l~~~l~~~~~-----~~tiii~sh~~~------~~~----~-~dri~~l~~G~i~ 233 (257)
T cd03288 182 EATASIDMATE-NILQKVVMTAFA-----DRTVVTIAHRVS------TIL----D-ADLVLVLSRGILV 233 (257)
T ss_pred CCccCCCHHHH-HHHHHHHHHhcC-----CCEEEEEecChH------HHH----h-CCEEEEEECCEEE
Confidence 99999998765 445555554421 466778776222 111 1 2356777777654
No 312
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.48 E-value=4.7e-14 Score=135.63 Aligned_cols=127 Identities=17% Similarity=0.183 Sum_probs=95.7
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccCCCcCCcc
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHPAAKHGG 476 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~~~~~tv 476 (630)
.+|++++|.+.+| ++++|+||||+||||+++.|++.+.+..|+|.+.+.+..+....+..+ ..++
T Consensus 14 ~vl~~i~~~i~~G--e~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~---~~i~---------- 78 (163)
T cd03216 14 KALDGVSLSVRRG--EVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARR---AGIA---------- 78 (163)
T ss_pred EEEeeeEEEEeCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHh---cCeE----------
Confidence 4788999999999 999999999999999999999999999999999887653322111111 1111
Q ss_pred hhhhHhhhccCCCCHHHHHHHHHHHhhhcCCCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCccHHHHH
Q psy11993 477 REMVQLFEKGYGKDPAEIAFRAISHARDMHIDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQL 556 (630)
Q Consensus 477 ~env~l~~~~~~~d~~~ia~~ai~~a~~~~~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~Dav~ql 556 (630)
.+.+.||+++++..++++|. .+| .++++|||+.++|...+
T Consensus 79 ---------------------------------~~~qLS~G~~qrl~laral~-----~~p-~illlDEP~~~LD~~~~- 118 (163)
T cd03216 79 ---------------------------------MVYQLSVGERQMVEIARALA-----RNA-RLLILDEPTAALTPAEV- 118 (163)
T ss_pred ---------------------------------EEEecCHHHHHHHHHHHHHh-----cCC-CEEEEECCCcCCCHHHH-
Confidence 01229999999999999999 788 56668999999997765
Q ss_pred HHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 557 VKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 557 ~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
..+.+.++++.. .+.+.+++|+
T Consensus 119 ~~l~~~l~~~~~----~~~tiii~sh 140 (163)
T cd03216 119 ERLFKVIRRLRA----QGVAVIFISH 140 (163)
T ss_pred HHHHHHHHHHHH----CCCEEEEEeC
Confidence 455566665542 2567777776
No 313
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.48 E-value=1.1e-13 Score=143.26 Aligned_cols=162 Identities=18% Similarity=0.076 Sum_probs=110.3
Q ss_pred chhhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccCCCcCC
Q psy11993 395 RVDILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHPAAKH 474 (630)
Q Consensus 395 ~~~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~~~~~ 474 (630)
...+|++++|.+.+| ++++|+||||+||||++.+|++.+.+..|.|.+.+...+ ..| .....+.+
T Consensus 36 ~~~il~~is~~i~~G--e~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~~g~~~~----~~~---------~~~~~~~~ 100 (264)
T PRK13546 36 TFFALDDISLKAYEG--DVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNGEVSV----IAI---------SAGLSGQL 100 (264)
T ss_pred ceEEEeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEeE----Eec---------ccCCCCCC
Confidence 346899999999999 999999999999999999999999999999988663111 000 00113356
Q ss_pred cchhhhHhhhccCCCCHHHHH---HHHHHHhhhcC-CCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCc
Q psy11993 475 GGREMVQLFEKGYGKDPAEIA---FRAISHARDMH-IDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGN 550 (630)
Q Consensus 475 tv~env~l~~~~~~~d~~~ia---~~ai~~a~~~~-~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~ 550 (630)
|+.+|+.+....++.+..... ..+++...... .+..+...|||++++..++++|. .+| .+|++|||+.|+
T Consensus 101 tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~Laral~-----~~p-~iLlLDEPt~gL 174 (264)
T PRK13546 101 TGIENIEFKMLCMGFKRKEIKAMTPKIIEFSELGEFIYQPVKKYSSGMRAKLGFSINIT-----VNP-DILVIDEALSVG 174 (264)
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHh-----hCC-CEEEEeCccccC
Confidence 888888654322233333222 22232222111 23345678999999999999999 788 577799999999
Q ss_pred cHHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 551 EAVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 551 Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
|...+ ..+.+.+.++.. .+.+.|++|+
T Consensus 175 D~~~~-~~l~~~L~~~~~----~g~tiIiisH 201 (264)
T PRK13546 175 DQTFA-QKCLDKIYEFKE----QNKTIFFVSH 201 (264)
T ss_pred CHHHH-HHHHHHHHHHHH----CCCEEEEEcC
Confidence 97654 344555555532 2567788887
No 314
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=99.48 E-value=7.8e-14 Score=142.32 Aligned_cols=173 Identities=16% Similarity=0.097 Sum_probs=107.3
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHH--HhcCCeEEEeecccCCccHHHHHHHHHhhhcccCC-CcC
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWL--IENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHP-AAK 473 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l--~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~-~~~ 473 (630)
.+|++++|.+.+| ++++|+||||+||||+++.|++.+ .+..|+|.+.+.+..+.......+....++.+... ++.
T Consensus 15 ~~l~~isl~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 92 (248)
T PRK09580 15 AILRGLNLEVRPG--EVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGEGIFMAFQYPVEIPG 92 (248)
T ss_pred eeeecceeEEcCC--CEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhcceEEEecCchhccc
Confidence 4789999999999 999999999999999999999985 58899999998887543322211122233333221 222
Q ss_pred CcchhhhHhhhcc---C-C---CCH---HHHHHHHHHHhhhc-C-CCeeee-ccccchhchHHHHHHHHhhhhhcCCCeE
Q psy11993 474 HGGREMVQLFEKG---Y-G---KDP---AEIAFRAISHARDM-H-IDVVLI-DTAGRMQDNEPLMRALAKLVKVNQPDLL 540 (630)
Q Consensus 474 ~tv~env~l~~~~---~-~---~d~---~~ia~~ai~~a~~~-~-~D~vlI-DTaGr~~~~~~L~~aL~kl~~~~~Pd~V 540 (630)
++...++...... + . .+. ...+.+.++.+... + .+..+. ..||+++++..++++|. .+| .+
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrv~laral~-----~~p-~i 166 (248)
T PRK09580 93 VSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAV-----LEP-EL 166 (248)
T ss_pred hhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCCCCCCHHHHHHHHHHHHHH-----cCC-CE
Confidence 3333332211100 0 0 111 11122222222221 1 122232 68999999999999999 788 56
Q ss_pred EEEeccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 541 LFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 541 LlV~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
|++|||++++|...+ ..+.+.+..+.. .+.+.|++|+
T Consensus 167 llLDEPt~~LD~~~~-~~l~~~l~~l~~----~~~tiii~sH 203 (248)
T PRK09580 167 CILDESDSGLDIDAL-KIVADGVNSLRD----GKRSFIIVTH 203 (248)
T ss_pred EEEeCCCccCCHHHH-HHHHHHHHHHHh----CCCEEEEEeC
Confidence 668999999998764 345555555432 1467778887
No 315
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.48 E-value=1.7e-13 Score=142.74 Aligned_cols=197 Identities=17% Similarity=0.138 Sum_probs=133.1
Q ss_pred chhhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHH-h----cCCeEEEeecccCCccHHHHHHHHHhhhcccC
Q psy11993 395 RVDILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLI-E----NNLNVLIAACDTFRAGAVEQLRTHVRHLCSLH 469 (630)
Q Consensus 395 ~~~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~-~----~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~ 469 (630)
.+.++++|+|.+.+| ++++|||.+|||||||...|.+++. + .+|+|.+.+.|.++....+..+.++..+...+
T Consensus 17 ~v~av~~vs~~i~~G--E~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~~~~iRG~~I~mIf 94 (316)
T COG0444 17 VVKAVDGVSFELKKG--EILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKELRKIRGKEIAMIF 94 (316)
T ss_pred cEEEEeceeEEEcCC--cEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHHHHhhcCceEEEEE
Confidence 467899999999999 9999999999999999999999996 3 36899999999988776532233344444333
Q ss_pred C------CcCCcchhhhHh-hhccCCC-CHHHHHHHHHHHhhhcCC-------CeeeeccccchhchHHHHHHHHhhhhh
Q psy11993 470 P------AAKHGGREMVQL-FEKGYGK-DPAEIAFRAISHARDMHI-------DVVLIDTAGRMQDNEPLMRALAKLVKV 534 (630)
Q Consensus 470 ~------~~~~tv~env~l-~~~~~~~-d~~~ia~~ai~~a~~~~~-------D~vlIDTaGr~~~~~~L~~aL~kl~~~ 534 (630)
+ .|.+++.+-+.- +...... ...+...++++.++.-++ +......||||.|+..++.+|+
T Consensus 95 Q~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhelSGGMrQRV~IAmala----- 169 (316)
T COG0444 95 QDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPHELSGGMRQRVMIAMALA----- 169 (316)
T ss_pred cCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCcccCCcHHHHHHHHHHHh-----
Confidence 3 344565544432 2222222 233333344444443332 3346788999999999999999
Q ss_pred cCCCeEEEEeccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcccCCcCccHHHHHHHHHHhCCcEEEEecCCCC
Q psy11993 535 NQPDLLLFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGTGQTY 613 (630)
Q Consensus 535 ~~Pd~VLlV~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK~D~~~~~~G~~ls~~~~~g~PI~fvg~Gq~v 613 (630)
.+|+ +|+.||||+++|...|++.++ .+.++.. ..+.+.+++|+ | .|.+-.++. -|.-...|+-|
T Consensus 170 ~~P~-LlIADEPTTALDvt~QaqIl~-Ll~~l~~---e~~~aiilITH----D--l~vva~~aD----ri~VMYaG~iV 233 (316)
T COG0444 170 LNPK-LLIADEPTTALDVTVQAQILD-LLKELQR---EKGTALILITH----D--LGVVAEIAD----RVAVMYAGRIV 233 (316)
T ss_pred CCCC-EEEeCCCcchhhHHHHHHHHH-HHHHHHH---hcCCEEEEEeC----C--HHHHHHhcc----eEEEEECcEEE
Confidence 9995 455999999999998876654 3444432 24688899997 3 666655555 35555555543
No 316
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=99.48 E-value=6.2e-14 Score=139.06 Aligned_cols=146 Identities=18% Similarity=0.142 Sum_probs=101.6
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHH--HHhcCCeEEEeecccCCccHHHHHHHHHhhhcccCC-CcC
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFW--LIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHP-AAK 473 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~--l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~-~~~ 473 (630)
.+|++++|.+.+| ++++|+|+||+||||+++.|++. +.++.|+|.+.+.++.+.......+....++.+... ++.
T Consensus 14 ~~l~~is~~i~~G--e~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 91 (200)
T cd03217 14 EILKGVNLTIKKG--EVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLGIFLAFQYPPEIPG 91 (200)
T ss_pred EeeeccceEECCC--cEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCcEEEeecChhhccC
Confidence 4789999999999 99999999999999999999998 468899999998877554322111222233332211 111
Q ss_pred CcchhhhHhhhccCCCCHHHHHHHHHHHhhhcCCCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCccHH
Q psy11993 474 HGGREMVQLFEKGYGKDPAEIAFRAISHARDMHIDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAV 553 (630)
Q Consensus 474 ~tv~env~l~~~~~~~d~~~ia~~ai~~a~~~~~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~Dav 553 (630)
.++.+++ +...-..||+++++..++++|. .+| .++++|||+.++|..
T Consensus 92 ~~~~~~l---------------------------~~~~~~LS~G~~qrv~laral~-----~~p-~illlDEPt~~LD~~ 138 (200)
T cd03217 92 VKNADFL---------------------------RYVNEGFSGGEKKRNEILQLLL-----LEP-DLAILDEPDSGLDID 138 (200)
T ss_pred ccHHHHH---------------------------hhccccCCHHHHHHHHHHHHHh-----cCC-CEEEEeCCCccCCHH
Confidence 2222111 1112368999999999999999 788 566699999999987
Q ss_pred HHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 554 DQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 554 ~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
.+ ..+.+.+.++.. .+.+.|++|+
T Consensus 139 ~~-~~l~~~L~~~~~----~~~tiii~sh 162 (200)
T cd03217 139 AL-RLVAEVINKLRE----EGKSVLIITH 162 (200)
T ss_pred HH-HHHHHHHHHHHH----CCCEEEEEec
Confidence 65 455666666542 2456777776
No 317
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.48 E-value=9e-14 Score=162.24 Aligned_cols=169 Identities=18% Similarity=0.161 Sum_probs=127.7
Q ss_pred hhhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccCCCcCCc
Q psy11993 396 VDILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHPAAKHG 475 (630)
Q Consensus 396 ~~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~~~~~t 475 (630)
..+|++++|.+++| +.++|+|+||+||||+++.|++.+.|.+|+|.+.+.|.-... .+.+|....++.+.......|
T Consensus 470 ~~il~~i~l~i~~G--~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i~~~~-~~~~r~~i~~v~q~~~lf~~t 546 (694)
T TIGR01846 470 PEVLSNLNLDIKPG--EFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIAD-PAWLRRQMGVVLQENVLFSRS 546 (694)
T ss_pred ccccccceEEECCC--CEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEehhhCC-HHHHHHhCeEEccCCeehhhh
Confidence 34899999999999 999999999999999999999999999999999999874443 346777778888877777899
Q ss_pred chhhhHhhhccCCCCHHHHHHHHHHHhh--------hcCCCeeee----ccccchhchHHHHHHHHhhhhhcCCCeEEEE
Q psy11993 476 GREMVQLFEKGYGKDPAEIAFRAISHAR--------DMHIDVVLI----DTAGRMQDNEPLMRALAKLVKVNQPDLLLFV 543 (630)
Q Consensus 476 v~env~l~~~~~~~d~~~ia~~ai~~a~--------~~~~D~vlI----DTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV 543 (630)
+++|+.+.... .+..++ .++++.+. -.++|..+. ..|||++++..++|+|. .+| .++++
T Consensus 547 i~eNi~~~~~~--~~~~~i-~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARall-----~~~-~ilil 617 (694)
T TIGR01846 547 IRDNIALCNPG--APFEHV-IHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALV-----GNP-RILIF 617 (694)
T ss_pred HHHHHhcCCCC--CCHHHH-HHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHHHH-----hCC-CEEEE
Confidence 99999875322 222222 22322221 125666654 36999999999999999 788 56669
Q ss_pred eccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 544 GEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 544 ~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
|||++++|..... .+.+.+.++. .+.+.|++|+
T Consensus 618 DEpts~LD~~~~~-~i~~~l~~~~-----~~~t~i~itH 650 (694)
T TIGR01846 618 DEATSALDYESEA-LIMRNMREIC-----RGRTVIIIAH 650 (694)
T ss_pred ECCCcCCCHHHHH-HHHHHHHHHh-----CCCEEEEEeC
Confidence 9999999987753 4455565543 2467888887
No 318
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=99.48 E-value=8.3e-14 Score=159.51 Aligned_cols=168 Identities=18% Similarity=0.180 Sum_probs=124.6
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccCCCcCCcc
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHPAAKHGG 476 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~~~~~tv 476 (630)
.+|++++|.+++| +.++|+||||+||||+++.|++++.|..|+|.+.+.|..... .+.++....++.+.......|+
T Consensus 349 ~~l~~i~~~i~~G--~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~-~~~~~~~i~~v~q~~~lf~~ti 425 (585)
T TIGR01192 349 QGVFDVSFEAKAG--QTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVT-RESLRKSIATVFQDAGLFNRSI 425 (585)
T ss_pred ccccceeEEEcCC--CEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEhhhCC-HHHHHhheEEEccCCccCcccH
Confidence 4799999999999 999999999999999999999999999999999988875443 3467777778887766667899
Q ss_pred hhhhHhhhccCCCCHHHHHHHHHHHh------h--hcCCCeee----eccccchhchHHHHHHHHhhhhhcCCCeEEEEe
Q psy11993 477 REMVQLFEKGYGKDPAEIAFRAISHA------R--DMHIDVVL----IDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVG 544 (630)
Q Consensus 477 ~env~l~~~~~~~d~~~ia~~ai~~a------~--~~~~D~vl----IDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~ 544 (630)
++|+.+..... +..++ ..+++.+ . ..++|..+ ...|||++++..++|+|. .+| .++++|
T Consensus 426 ~~Ni~~~~~~~--~~~~~-~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lARall-----~~p-~ililD 496 (585)
T TIGR01192 426 RENIRLGREGA--TDEEV-YEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAIL-----KNA-PILVLD 496 (585)
T ss_pred HHHHhcCCCCC--CHHHH-HHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHh-----cCC-CEEEEE
Confidence 99998753221 22222 1222211 1 12344433 346999999999999999 788 566799
Q ss_pred ccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 545 EALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 545 E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
||+.++|.... ..+.+.+.++.. +.+.|++|+
T Consensus 497 Epts~LD~~~~-~~i~~~l~~~~~-----~~tvI~isH 528 (585)
T TIGR01192 497 EATSALDVETE-ARVKNAIDALRK-----NRTTFIIAH 528 (585)
T ss_pred CCccCCCHHHH-HHHHHHHHHHhC-----CCEEEEEEc
Confidence 99999998764 445556655432 467788887
No 319
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.47 E-value=1.4e-13 Score=156.27 Aligned_cols=170 Identities=22% Similarity=0.178 Sum_probs=125.4
Q ss_pred hhhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccCCCcCCc
Q psy11993 396 VDILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHPAAKHG 475 (630)
Q Consensus 396 ~~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~~~~~t 475 (630)
..+|++++|.+++| +.++|+||||+||||+++.|++++.|..|+|.+.+.|..... .+.++....++.+.+.....|
T Consensus 331 ~~~l~~~~~~i~~G--~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~-~~~~~~~i~~v~q~~~lf~~t 407 (544)
T TIGR01842 331 KPTLRGISFRLQAG--EALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWD-RETFGKHIGYLPQDVELFPGT 407 (544)
T ss_pred ccccccceEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCC-HHHHhhheEEecCCccccccc
Confidence 35899999999999 999999999999999999999999999999999998875444 346677778888776666789
Q ss_pred chhhhHhhhccCCCCHHHHHHHHHHHh------hh--cCCCeee----eccccchhchHHHHHHHHhhhhhcCCCeEEEE
Q psy11993 476 GREMVQLFEKGYGKDPAEIAFRAISHA------RD--MHIDVVL----IDTAGRMQDNEPLMRALAKLVKVNQPDLLLFV 543 (630)
Q Consensus 476 v~env~l~~~~~~~d~~~ia~~ai~~a------~~--~~~D~vl----IDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV 543 (630)
+++|+.++... .+..++ .++++.+ .. .++|..+ ...|||++++..++|+|. .+| .++++
T Consensus 408 i~~Ni~~~~~~--~~~~~~-~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall-----~~~-~ilil 478 (544)
T TIGR01842 408 VAENIARFGEN--ADPEKI-IEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALY-----GDP-KLVVL 478 (544)
T ss_pred HHHHHhccCCC--CCHHHH-HHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHh-----cCC-CEEEE
Confidence 99999865421 222222 1222211 11 2445443 456999999999999998 788 56679
Q ss_pred eccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 544 GEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 544 ~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
|||++++|.... ..+.+.+.++.. .+.+.+++|+
T Consensus 479 DEpts~LD~~~~-~~i~~~l~~~~~----~~~tvi~ith 512 (544)
T TIGR01842 479 DEPNSNLDEEGE-QALANAIKALKA----RGITVVVITH 512 (544)
T ss_pred eCCccccCHHHH-HHHHHHHHHHhh----CCCEEEEEeC
Confidence 999999998754 445556655431 2467788886
No 320
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.47 E-value=1.4e-13 Score=153.19 Aligned_cols=160 Identities=18% Similarity=0.104 Sum_probs=112.6
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccCCCcCCcc
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHPAAKHGG 476 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~~~~~tv 476 (630)
.+|++++|.+.+| ++++|+||||+||||++++|++.+.+..|+|.+.+.+.+. + . . ....+.+|+
T Consensus 38 ~IL~nVSfsI~~G--EivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~~~i-~-~----------~-~~l~~~lTV 102 (549)
T PRK13545 38 YALNNISFEVPEG--EIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAALI-A-I----------S-SGLNGQLTG 102 (549)
T ss_pred eEEeeeEEEEeCC--CEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEeeeE-E-e----------c-cccCCCCcH
Confidence 4799999999999 9999999999999999999999999999999997755311 0 0 0 112345789
Q ss_pred hhhhHhhhccCCCCHHHH---HHHHHHHhhhcC-CCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCccH
Q psy11993 477 REMVQLFEKGYGKDPAEI---AFRAISHARDMH-IDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEA 552 (630)
Q Consensus 477 ~env~l~~~~~~~d~~~i---a~~ai~~a~~~~-~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~Da 552 (630)
.+|+.+.....+.+.... +..+++.+.... .+..+...|||++++..++++|. .+| .+|++|||+.|+|.
T Consensus 103 ~EnL~l~~~~~~~~~~e~~e~i~elLe~lgL~~~ld~~~~~LSGGQrQRVaLArAL~-----~~P-~LLLLDEPTsgLD~ 176 (549)
T PRK13545 103 IENIELKGLMMGLTKEKIKEIIPEIIEFADIGKFIYQPVKTYSSGMKSRLGFAISVH-----INP-DILVIDEALSVGDQ 176 (549)
T ss_pred HHHHHhhhhhcCCCHHHHHHHHHHHHHHcCChhHhhCCcccCCHHHHHHHHHHHHHH-----hCC-CEEEEECCcccCCH
Confidence 999876433223333222 223333332221 24456788999999999999999 788 56669999999998
Q ss_pred HHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 553 VDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 553 v~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
..+ ..+.+.+.++.. .+.+.|++|+
T Consensus 177 ~sr-~~LlelL~el~~----~G~TIIIVSH 201 (549)
T PRK13545 177 TFT-KKCLDKMNEFKE----QGKTIFFISH 201 (549)
T ss_pred HHH-HHHHHHHHHHHh----CCCEEEEEEC
Confidence 764 344555655532 2456777776
No 321
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.47 E-value=2.7e-13 Score=136.35 Aligned_cols=184 Identities=20% Similarity=0.124 Sum_probs=126.2
Q ss_pred chhhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccCCCcCC
Q psy11993 395 RVDILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHPAAKH 474 (630)
Q Consensus 395 ~~~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~~~~~ 474 (630)
...+|+||+|++.+| +.++|||+||+||||+++.||+.+.|+.|+|.+.+ +..+. +. ++.. ..+.+
T Consensus 39 ~~~aL~disf~i~~G--e~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~G----~v~~l-----i~--lg~G-f~pel 104 (249)
T COG1134 39 EFWALKDISFEIYKG--ERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTG----KVAPL-----IE--LGAG-FDPEL 104 (249)
T ss_pred eEEEecCceEEEeCC--CEEEEECCCCCcHHHHHHHHhCccCCCCceEEEcc----eEehh-----hh--cccC-CCccc
Confidence 578999999999999 99999999999999999999999999999998866 22221 11 1211 14568
Q ss_pred cchhhhHhhhccCCCCHHHH---HHHHHHHhhhcCCCeeee-ccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCc
Q psy11993 475 GGREMVQLFEKGYGKDPAEI---AFRAISHARDMHIDVVLI-DTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGN 550 (630)
Q Consensus 475 tv~env~l~~~~~~~d~~~i---a~~ai~~a~~~~~D~vlI-DTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~ 550 (630)
|+++|+.+....+|....++ ..+++++++..+|-...+ ..|.+|+.+....-+.. .+|| +|++||.+.--
T Consensus 105 TGreNi~l~~~~~G~~~~ei~~~~~eIieFaELG~fi~~PvktYSSGM~aRLaFsia~~-----~~pd-ILllDEvlavG 178 (249)
T COG1134 105 TGRENIYLRGLILGLTRKEIDEKVDEIIEFAELGDFIDQPVKTYSSGMYARLAFSVATH-----VEPD-ILLLDEVLAVG 178 (249)
T ss_pred chHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHhhCchhhccHHHHHHHHHhhhhh-----cCCC-EEEEehhhhcC
Confidence 99999999888777655444 566677777766533333 34777876666555555 7894 66689997766
Q ss_pred cHHHHHHHHHHHHhhcccCCCCCCeeEEEEcccCCcCccHHHHHHHHHHhCCcEEEEecCCCC
Q psy11993 551 EAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGTGQTY 613 (630)
Q Consensus 551 Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK~D~~~~~~G~~ls~~~~~g~PI~fvg~Gq~v 613 (630)
|+--+-+..+ .+.++.. ...+.|++|+ ..+.+-.++. .+.++-.||-.
T Consensus 179 D~~F~~K~~~-rl~e~~~----~~~tiv~VSH------d~~~I~~~Cd----~~i~l~~G~i~ 226 (249)
T COG1134 179 DAAFQEKCLE-RLNELVE----KNKTIVLVSH------DLGAIKQYCD----RAIWLEHGQIR 226 (249)
T ss_pred CHHHHHHHHH-HHHHHHH----cCCEEEEEEC------CHHHHHHhcC----eeEEEeCCEEE
Confidence 7654443332 2333322 2467788886 2444444444 57788888753
No 322
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=99.47 E-value=1.8e-13 Score=156.22 Aligned_cols=169 Identities=16% Similarity=0.118 Sum_probs=126.7
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccCCCcCCcc
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHPAAKHGG 476 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~~~~~tv 476 (630)
.+|++++|.+++| +.++|+|+||+||||+++.|++++.+..|+|.+.+.|..... ...++....++++.+.....|+
T Consensus 354 ~iL~~inl~i~~G--e~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i~~~~-~~~~~~~i~~~~Q~~~lf~~Ti 430 (576)
T TIGR02204 354 PALDGLNLTVRPG--ETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLD-PAELRARMALVPQDPVLFAASV 430 (576)
T ss_pred ccccceeEEecCC--CEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcC-HHHHHHhceEEccCCccccccH
Confidence 4899999999999 999999999999999999999999999999999998874433 3456777888888777888999
Q ss_pred hhhhHhhhccCCCCHHHHHHHHHHHhh--------hcCCCeeeec----cccchhchHHHHHHHHhhhhhcCCCeEEEEe
Q psy11993 477 REMVQLFEKGYGKDPAEIAFRAISHAR--------DMHIDVVLID----TAGRMQDNEPLMRALAKLVKVNQPDLLLFVG 544 (630)
Q Consensus 477 ~env~l~~~~~~~d~~~ia~~ai~~a~--------~~~~D~vlID----TaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~ 544 (630)
++|+.+.... .+..+ ...+++.+. ..++|..+.+ .|||+.++..++|++. .+| .++++|
T Consensus 431 ~~Ni~~~~~~--~~~~~-~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~laRal~-----~~~-~ililD 501 (576)
T TIGR02204 431 MENIRYGRPD--ATDEE-VEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAIL-----KDA-PILLLD 501 (576)
T ss_pred HHHHhcCCCC--CCHHH-HHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHHHHHHH-----hCC-CeEEEe
Confidence 9999875321 12222 223333221 1245555433 6899999999999999 677 566799
Q ss_pred ccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEccc
Q psy11993 545 EALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKF 583 (630)
Q Consensus 545 E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK~ 583 (630)
||++++|.... ..+.+.+.++.. +.+.|++|+-
T Consensus 502 Epts~lD~~~~-~~i~~~l~~~~~-----~~t~IiitH~ 534 (576)
T TIGR02204 502 EATSALDAESE-QLVQQALETLMK-----GRTTLIIAHR 534 (576)
T ss_pred CcccccCHHHH-HHHHHHHHHHhC-----CCEEEEEecc
Confidence 99999998764 345555555432 4678899983
No 323
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.46 E-value=3.2e-14 Score=131.62 Aligned_cols=131 Identities=24% Similarity=0.236 Sum_probs=97.2
Q ss_pred hhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccCC-CcCCcch
Q psy11993 399 LRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHP-AAKHGGR 477 (630)
Q Consensus 399 L~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~-~~~~tv~ 477 (630)
|+++++.+.+| ++++|+|+||+||||+++.|++.+.+..|.|.+.+.++.. .....++....++.+... +..+|+.
T Consensus 1 L~~v~~~i~~g--~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~tv~ 77 (137)
T PF00005_consen 1 LKNVSLEIKPG--EIVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKDISD-IDIEELRRRIGYVPQDPQLFPGLTVR 77 (137)
T ss_dssp EEEEEEEEETT--SEEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEEGTT-SHHHHHHHTEEEEESSHCHHTTSBHH
T ss_pred CCceEEEEcCC--CEEEEEccCCCccccceeeecccccccccccccccccccc-cccccccccccccccccccccccccc
Confidence 56788999999 9999999999999999999999999999999999988865 334455666666655422 4445566
Q ss_pred hhhHhhhccCCCCHHHHHHHHHHHhhhcCC-Ceee----eccccchhchHHHHHHHHhhhhhcCCCeEEEEecccc
Q psy11993 478 EMVQLFEKGYGKDPAEIAFRAISHARDMHI-DVVL----IDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALV 548 (630)
Q Consensus 478 env~l~~~~~~~d~~~ia~~ai~~a~~~~~-D~vl----IDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~ 548 (630)
++ ........++..+....+ +..+ ...||+++++..++++|. .+| .++++|||++
T Consensus 78 ~~----------~~~~~~~~~l~~l~~~~~~~~~~~~~~~~LS~Ge~~rl~la~al~-----~~~-~llllDEPt~ 137 (137)
T PF00005_consen 78 EN----------ESDERIEEVLKKLGLEDLLDRKIGQRASSLSGGEKQRLALARALL-----KNP-KLLLLDEPTN 137 (137)
T ss_dssp HH----------HHHHHHHHHHHHTTHGGGTGSBGTSCGGGSCHHHHHHHHHHHHHH-----TTS-SEEEEESTTT
T ss_pred cc----------cccccccccccccccccccccccccccchhhHHHHHHHHHHHHHH-----cCC-CEEEEeCCCC
Confidence 66 122234455555554442 3344 778999999999999998 777 5666999974
No 324
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.46 E-value=4.9e-13 Score=127.73 Aligned_cols=180 Identities=22% Similarity=0.258 Sum_probs=123.0
Q ss_pred HHHHHHcCCCcchhhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEee-----cccCCccHHHHH
Q psy11993 384 DALVQILSPKRRVDILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAA-----CDTFRAGAVEQL 458 (630)
Q Consensus 384 ~~L~~il~~~~~~~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~-----~Dt~R~ga~eQL 458 (630)
..|++.|++... -++|+|.+-+| ++++|||.+|+||||++++|++.+.|+.|.|.+.. .|.|+.+..+.-
T Consensus 10 ~~lsk~Yg~~~g---c~~vsF~l~PG--eVLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r~~~~~dl~~msEaeRR 84 (258)
T COG4107 10 SGLSKLYGPGKG---CRDVSFDLYPG--EVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAERR 84 (258)
T ss_pred hhhhhhhCCCcC---ccccceeecCC--cEEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcCCCCchhHhhhchHHHH
Confidence 357888887643 46899999999 99999999999999999999999999999999987 566776655543
Q ss_pred HHHHhhhcccCCCcCCcch------hhh-----HhhhccCCCCHHHHHHHHHHHhhhcCCCee-----eeccccchhchH
Q psy11993 459 RTHVRHLCSLHPAAKHGGR------EMV-----QLFEKGYGKDPAEIAFRAISHARDMHIDVV-----LIDTAGRMQDNE 522 (630)
Q Consensus 459 r~~~~~l~~~~~~~~~tv~------env-----~l~~~~~~~d~~~ia~~ai~~a~~~~~D~v-----lIDTaGr~~~~~ 522 (630)
+....-.++.++.|....+ .|| .+..+.|+. +...|.++++.-..|.- .-..+|+|+++.
T Consensus 85 ~L~RTeWG~VhQnP~DGLRm~VSAG~NiGERlma~G~RHYG~----iR~~a~~WL~~VEI~~~RiDD~PrtFSGGMqQRL 160 (258)
T COG4107 85 RLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGARHYGN----IRAEAQDWLEEVEIDLDRIDDLPRTFSGGMQQRL 160 (258)
T ss_pred HHhhhccceeecCccccceeeeccCCccchhHHhhhhhhhhh----HHHHHHHHHHhcccCcccccCcccccchHHHHHH
Confidence 3333334555554332111 111 122233332 33445555554444333 333589999999
Q ss_pred HHHHHHHhhhhhcCCCeEEEEeccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 523 PLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 523 ~L~~aL~kl~~~~~Pd~VLlV~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
.+++.|. ..|. ++|.+||+-|+|.--|++.+. .++.+. ...++..+|+|+
T Consensus 161 QiARnLV-----t~Pr-LvfMDEPTGGLDVSVQARLLD-llrgLv---~~l~la~viVTH 210 (258)
T COG4107 161 QIARNLV-----TRPR-LVFMDEPTGGLDVSVQARLLD-LLRGLV---RELGLAVVIVTH 210 (258)
T ss_pred HHHHHhc-----cCCc-eEEecCCCCCcchhhHHHHHH-HHHHHH---HhcCceEEEEec
Confidence 9999998 8894 556999999999887776543 333322 234688899997
No 325
>PLN03211 ABC transporter G-25; Provisional
Probab=99.45 E-value=2.2e-13 Score=157.61 Aligned_cols=168 Identities=16% Similarity=0.125 Sum_probs=117.6
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhc--CCeEEEeecccCCccHHHHHHHHHhhhcccCC-CcC
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIEN--NLNVLIAACDTFRAGAVEQLRTHVRHLCSLHP-AAK 473 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~--ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~-~~~ 473 (630)
.+|+++++.+.+| ++++|+||||+||||+++.|++.+.+. .|+|.+.+.+..+ +.+....++.+... ++.
T Consensus 82 ~iL~~vs~~i~~G--e~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~~-----~~~~~i~yv~Q~~~l~~~ 154 (659)
T PLN03211 82 TILNGVTGMASPG--EILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTK-----QILKRTGFVTQDDILYPH 154 (659)
T ss_pred eeeeCCEEEEECC--EEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECch-----hhccceEEECcccccCCc
Confidence 4789999999999 999999999999999999999998774 7999999877521 22223445554433 557
Q ss_pred CcchhhhHhhhccC---CCCHHHH---HHHHHHHhhhcCC-Cee-----eeccccchhchHHHHHHHHhhhhhcCCCeEE
Q psy11993 474 HGGREMVQLFEKGY---GKDPAEI---AFRAISHARDMHI-DVV-----LIDTAGRMQDNEPLMRALAKLVKVNQPDLLL 541 (630)
Q Consensus 474 ~tv~env~l~~~~~---~~d~~~i---a~~ai~~a~~~~~-D~v-----lIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VL 541 (630)
+|+++++.+..... .....+. +.+.++.+...++ |.+ .-..|||++++..++++|. .+| .+|
T Consensus 155 lTV~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~-----~~P-~iL 228 (659)
T PLN03211 155 LTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEML-----INP-SLL 228 (659)
T ss_pred CCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHH-----hCC-CEE
Confidence 89999998764322 1122222 3334443333222 332 3357999999999999999 788 577
Q ss_pred EEeccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 542 FVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 542 lV~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
++|||++|+|..... .+.+.+++++. .+.+.|+.|+
T Consensus 229 lLDEPtsgLD~~~~~-~l~~~L~~l~~----~g~TvI~~sH 264 (659)
T PLN03211 229 ILDEPTSGLDATAAY-RLVLTLGSLAQ----KGKTIVTSMH 264 (659)
T ss_pred EEeCCCCCcCHHHHH-HHHHHHHHHHh----CCCEEEEEec
Confidence 799999999987654 34455665543 2456677776
No 326
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=99.45 E-value=3e-13 Score=136.39 Aligned_cols=159 Identities=18% Similarity=0.123 Sum_probs=107.2
Q ss_pred hhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccCCC---cCCcchhhhH
Q psy11993 405 AKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHPA---AKHGGREMVQ 481 (630)
Q Consensus 405 ~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~~---~~~tv~env~ 481 (630)
.+.+| ++++|+|+||+||||+++.|++.+.+..|+|.+.+.++. ..+....++.+.... ..+|+.+|+.
T Consensus 2 ~i~~G--e~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~------~~~~~i~~v~q~~~~~~~~~~tv~~~l~ 73 (223)
T TIGR03771 2 SADKG--ELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPG------KGWRHIGYVPQRHEFAWDFPISVAHTVM 73 (223)
T ss_pred ccCCC--cEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccch------HhhCcEEEecccccccCCCCccHHHHHH
Confidence 35678 999999999999999999999999999999999887752 112233444433221 2368888886
Q ss_pred hhhcc----CC-CC--HHHHHHHHHHHhhhcC-CCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCccHH
Q psy11993 482 LFEKG----YG-KD--PAEIAFRAISHARDMH-IDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAV 553 (630)
Q Consensus 482 l~~~~----~~-~d--~~~ia~~ai~~a~~~~-~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~Dav 553 (630)
+.... .. .. ....+..+++.+.... .+..+.+.||+++++..++++|. .+| .++++|||+.++|..
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~-----~~p-~llilDEP~~~LD~~ 147 (223)
T TIGR03771 74 SGRTGHIGWLRRPCVADFAAVRDALRRVGLTELADRPVGELSGGQRQRVLVARALA-----TRP-SVLLLDEPFTGLDMP 147 (223)
T ss_pred hccccccccccCCcHHHHHHHHHHHHHhCCchhhcCChhhCCHHHHHHHHHHHHHh-----cCC-CEEEEeCCcccCCHH
Confidence 53211 11 11 1122333444433322 23446678999999999999999 788 566699999999988
Q ss_pred HHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 554 DQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 554 ~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
.+. .+.+.+.++.. .+.+.|++|+
T Consensus 148 ~~~-~l~~~l~~~~~----~~~tvii~sH 171 (223)
T TIGR03771 148 TQE-LLTELFIELAG----AGTAILMTTH 171 (223)
T ss_pred HHH-HHHHHHHHHHH----cCCEEEEEeC
Confidence 754 45555665542 2567788887
No 327
>PLN03130 ABC transporter C family member; Provisional
Probab=99.44 E-value=2.3e-13 Score=170.72 Aligned_cols=167 Identities=16% Similarity=0.177 Sum_probs=129.9
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccCCCcCCcc
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHPAAKHGG 476 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~~~~~tv 476 (630)
.+|++++|.+++| +.++|||+|||||||++..|.+++.+..|+|.|.+.|+...+ .+.+|....+++|.+.....|+
T Consensus 1253 ~VL~~is~~I~~G--ekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i~-l~~LR~~IsiVpQdp~LF~GTI 1329 (1622)
T PLN03130 1253 PVLHGLSFEISPS--EKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFG-LMDLRKVLGIIPQAPVLFSGTV 1329 (1622)
T ss_pred ceecceeEEEcCC--CEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCEecccCC-HHHHHhccEEECCCCccccccH
Confidence 4899999999999 999999999999999999999999999999999999996655 4588988899998888778999
Q ss_pred hhhhHhhhccCCCCHHHHHHHHHHHhhh--------cCCCeeee----ccccchhchHHHHHHHHhhhhhcCCCeEEEEe
Q psy11993 477 REMVQLFEKGYGKDPAEIAFRAISHARD--------MHIDVVLI----DTAGRMQDNEPLMRALAKLVKVNQPDLLLFVG 544 (630)
Q Consensus 477 ~env~l~~~~~~~d~~~ia~~ai~~a~~--------~~~D~vlI----DTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~ 544 (630)
++|+..+.. .+..+ ..+|++.+.. .++|..+. ..|||++|+..++|+|. .+| .||++|
T Consensus 1330 reNLd~~~~---~tdee-i~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARALL-----r~p-~ILILD 1399 (1622)
T PLN03130 1330 RFNLDPFNE---HNDAD-LWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALL-----RRS-KILVLD 1399 (1622)
T ss_pred HHHhCcCCC---CCHHH-HHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHHHHHH-----cCC-CEEEEE
Confidence 999987542 22333 2334433321 35676654 36899999999999999 677 677899
Q ss_pred ccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 545 EALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 545 E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
|||++.|..... .+.+.+++... +.+.|++++
T Consensus 1400 EATSaLD~~Te~-~Iq~~I~~~~~-----~~TvI~IAH 1431 (1622)
T PLN03130 1400 EATAAVDVRTDA-LIQKTIREEFK-----SCTMLIIAH 1431 (1622)
T ss_pred CCCCCCCHHHHH-HHHHHHHHHCC-----CCEEEEEeC
Confidence 999999987653 44555654322 456677765
No 328
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.44 E-value=2.5e-13 Score=170.15 Aligned_cols=167 Identities=15% Similarity=0.108 Sum_probs=131.2
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccCCCcCCcc
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHPAAKHGG 476 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~~~~~tv 476 (630)
.+|++++|.+++| +.++|||+|||||||++..|.+++.+++|+|.|.+.|+...+ .+.||....+++|.+.....|+
T Consensus 1300 ~vL~~is~~I~~G--ekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~dI~~i~-~~~LR~~i~iVpQdp~LF~gTI 1376 (1522)
T TIGR00957 1300 LVLRHINVTIHGG--EKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIG-LHDLRFKITIIPQDPVLFSGSL 1376 (1522)
T ss_pred ccccceeEEEcCC--CEEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCEEccccC-HHHHHhcCeEECCCCcccCccH
Confidence 4899999999999 999999999999999999999999999999999999996655 4588998899999888778899
Q ss_pred hhhhHhhhccCCCCHHHHHHHHHHHhhh--------cCCCeeeec----cccchhchHHHHHHHHhhhhhcCCCeEEEEe
Q psy11993 477 REMVQLFEKGYGKDPAEIAFRAISHARD--------MHIDVVLID----TAGRMQDNEPLMRALAKLVKVNQPDLLLFVG 544 (630)
Q Consensus 477 ~env~l~~~~~~~d~~~ia~~ai~~a~~--------~~~D~vlID----TaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~ 544 (630)
++|+..+.. .+..+ ..+|++.+.. .++|..+.+ .|||++|+..++|+|. .+| .||++|
T Consensus 1377 r~NLdp~~~---~sdee-i~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LARALL-----r~~-~ILiLD 1446 (1522)
T TIGR00957 1377 RMNLDPFSQ---YSDEE-VWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALL-----RKT-KILVLD 1446 (1522)
T ss_pred HHHcCcccC---CCHHH-HHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHHHHHHHH-----cCC-CEEEEE
Confidence 999975531 22333 2334443321 467777654 6999999999999999 667 677799
Q ss_pred ccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 545 EALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 545 E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
||+++.|.... ..+.+.+++.. .+.+.|++++
T Consensus 1447 EaTSalD~~Te-~~Iq~~l~~~~-----~~~TvI~IAH 1478 (1522)
T TIGR00957 1447 EATAAVDLETD-NLIQSTIRTQF-----EDCTVLTIAH 1478 (1522)
T ss_pred CCcccCCHHHH-HHHHHHHHHHc-----CCCEEEEEec
Confidence 99999998764 34555665432 2467778876
No 329
>PLN03232 ABC transporter C family member; Provisional
Probab=99.44 E-value=2.4e-13 Score=170.07 Aligned_cols=167 Identities=16% Similarity=0.181 Sum_probs=129.7
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccCCCcCCcc
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHPAAKHGG 476 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~~~~~tv 476 (630)
.+|+|++|.+++| +.++|||+|||||||++..|.+++.+.+|+|.|.+.|+...+ .+++|....+++|.+.....|+
T Consensus 1250 ~vL~~isl~I~~G--ekvaIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~-~~~lR~~i~iVpQdp~LF~gTI 1326 (1495)
T PLN03232 1250 PVLHGLSFFVSPS--EKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFG-LTDLRRVLSIIPQSPVLFSGTV 1326 (1495)
T ss_pred cccccceEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCC-HHHHHhhcEEECCCCeeeCccH
Confidence 4899999999999 999999999999999999999999999999999999986655 4678988899998887778899
Q ss_pred hhhhHhhhccCCCCHHHHHHHHHHHhhh--------cCCCeeee----ccccchhchHHHHHHHHhhhhhcCCCeEEEEe
Q psy11993 477 REMVQLFEKGYGKDPAEIAFRAISHARD--------MHIDVVLI----DTAGRMQDNEPLMRALAKLVKVNQPDLLLFVG 544 (630)
Q Consensus 477 ~env~l~~~~~~~d~~~ia~~ai~~a~~--------~~~D~vlI----DTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~ 544 (630)
++|+.++.. .+..+ ..++++.+.. .++|..+. ..|||++|+..++|+|. .+| .+|++|
T Consensus 1327 r~NL~~~~~---~sdee-i~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARALL-----r~~-~ILILD 1396 (1495)
T PLN03232 1327 RFNIDPFSE---HNDAD-LWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALL-----RRS-KILVLD 1396 (1495)
T ss_pred HHHcCCCCC---CCHHH-HHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHHH-----hCC-CEEEEE
Confidence 999987531 22333 2334433221 35676654 36899999999999999 677 677799
Q ss_pred ccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 545 EALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 545 E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
|||++.|.... +.+.+.+++.. .+.+.|++++
T Consensus 1397 EATSaLD~~Te-~~Iq~~L~~~~-----~~~TvI~IAH 1428 (1495)
T PLN03232 1397 EATASVDVRTD-SLIQRTIREEF-----KSCTMLVIAH 1428 (1495)
T ss_pred CCcccCCHHHH-HHHHHHHHHHc-----CCCEEEEEeC
Confidence 99999998654 34455565432 2467788876
No 330
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=99.44 E-value=2.5e-13 Score=132.42 Aligned_cols=143 Identities=20% Similarity=0.220 Sum_probs=100.6
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccCCCcCCcc
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHPAAKHGG 476 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~~~~~tv 476 (630)
.+|++++|.+.+| ++++|+||||+||||+++.|++.+.++.|+|.+.+.++.+.... .++....++.+
T Consensus 13 ~~l~~~~~~i~~G--~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~~~-~~~~~i~~~~q--------- 80 (180)
T cd03214 13 TVLDDLSLSIEAG--EIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPK-ELARKIAYVPQ--------- 80 (180)
T ss_pred eeEeeeEEEECCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCCHH-HHHHHHhHHHH---------
Confidence 4789999999999 99999999999999999999999999999999988776443222 22222222211
Q ss_pred hhhhHhhhccCCCCHHHHHHHHHHHhhhcC-CCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCccHHHH
Q psy11993 477 REMVQLFEKGYGKDPAEIAFRAISHARDMH-IDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQ 555 (630)
Q Consensus 477 ~env~l~~~~~~~d~~~ia~~ai~~a~~~~-~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~Dav~q 555 (630)
+++.+.... .+..+-..||+++++..++++|. .+| .++++|||+.++|....
T Consensus 81 ---------------------~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~-----~~p-~llllDEP~~~LD~~~~ 133 (180)
T cd03214 81 ---------------------ALELLGLAHLADRPFNELSGGERQRVLLARALA-----QEP-PILLLDEPTSHLDIAHQ 133 (180)
T ss_pred ---------------------HHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHh-----cCC-CEEEEeCCccCCCHHHH
Confidence 111111110 12235678999999999999999 788 56669999999997654
Q ss_pred HHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 556 LVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 556 l~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
..+.+.+.++... .+.+.|++|+
T Consensus 134 -~~~~~~l~~~~~~---~~~tiii~sh 156 (180)
T cd03214 134 -IELLELLRRLARE---RGKTVVMVLH 156 (180)
T ss_pred -HHHHHHHHHHHHh---cCCEEEEEeC
Confidence 4555566555421 1356677776
No 331
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.44 E-value=3.8e-13 Score=149.38 Aligned_cols=196 Identities=16% Similarity=0.150 Sum_probs=135.7
Q ss_pred chhhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCcc--HHHHHHHHHhhhcccCC--
Q psy11993 395 RVDILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAG--AVEQLRTHVRHLCSLHP-- 470 (630)
Q Consensus 395 ~~~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~g--a~eQLr~~~~~l~~~~~-- 470 (630)
...++++|+|.+.+| ++++|||.+||||||+++.|++++.|.+|.|.+.+.| .... ....++...+++.+.++
T Consensus 303 ~~~Av~~VSf~l~~G--E~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~-~~~~~~~~~~~r~~~QmvFQdp~~S 379 (539)
T COG1123 303 EVKAVDDVSFDLREG--ETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQD-LDLTGGELRRLRRRIQMVFQDPYSS 379 (539)
T ss_pred ceeeeeeeeeEecCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCcc-cccccchhhhhhhheEEEEeCcccc
Confidence 467899999999999 9999999999999999999999999999999999977 2222 22334444455544433
Q ss_pred -CcCCcchhhhHhhhccCCCC-HHHH---HHHHHHHhhhcC--CCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEE
Q psy11993 471 -AAKHGGREMVQLFEKGYGKD-PAEI---AFRAISHARDMH--IDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFV 543 (630)
Q Consensus 471 -~~~~tv~env~l~~~~~~~d-~~~i---a~~ai~~a~~~~--~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV 543 (630)
.|.+|+.+.+.--...+... ..+. ..+.++...... ++...-..|||++++..++++|+ .+| .+|+.
T Consensus 380 LnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP~elSGGQrQRvaIARALa-----~~P-~lli~ 453 (539)
T COG1123 380 LNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYPHELSGGQRQRVAIARALA-----LEP-KLLIL 453 (539)
T ss_pred cCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhcCchhcCcchhHHHHHHHHHh-----cCC-CEEEe
Confidence 66788888875443323222 1221 222233222221 34457778999999999999999 899 56669
Q ss_pred eccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcccCCcCccHHHHHHHHHHhCCcEEEEecCCCC
Q psy11993 544 GEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGTGQTY 613 (630)
Q Consensus 544 ~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK~D~~~~~~G~~ls~~~~~g~PI~fvg~Gq~v 613 (630)
|||+..+|..-|+..++- +.++.. ..+++-+++|+ | ...+..+++ .|.....|+-|
T Consensus 454 DEp~SaLDvsvqa~VlnL-l~~lq~---e~g~t~lfISH----D--l~vV~~i~d----rv~vm~~G~iV 509 (539)
T COG1123 454 DEPVSALDVSVQAQVLNL-LKDLQE---ELGLTYLFISH----D--LAVVRYIAD----RVAVMYDGRIV 509 (539)
T ss_pred cCCccccCHHHHHHHHHH-HHHHHH---HhCCEEEEEeC----C--HHHHHhhCc----eEEEEECCeEE
Confidence 999999999888776653 334432 24789999997 2 333444444 46666666654
No 332
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=99.43 E-value=4.1e-13 Score=155.47 Aligned_cols=173 Identities=16% Similarity=0.101 Sum_probs=122.5
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHH---HHHHHhhhcccCC-Cc
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQ---LRTHVRHLCSLHP-AA 472 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQ---Lr~~~~~l~~~~~-~~ 472 (630)
.+|++++|++.+| ++++|+||||+||||+++.|++.+.+..|+|.+.+.++.+....+. .+....++.+... ++
T Consensus 22 ~il~~vs~~i~~G--e~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~ 99 (648)
T PRK10535 22 EVLKGISLDIYAG--EMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQLRREHFGFIFQRYHLLS 99 (648)
T ss_pred eeeeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcCCHHHHHHHHhccEEEEeCCcccCC
Confidence 5799999999999 9999999999999999999999999999999999988765543321 1234455555443 45
Q ss_pred CCcchhhhHhhhccCCCCHHHHHHHHHHHhhhcCC----CeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEecccc
Q psy11993 473 KHGGREMVQLFEKGYGKDPAEIAFRAISHARDMHI----DVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALV 548 (630)
Q Consensus 473 ~~tv~env~l~~~~~~~d~~~ia~~ai~~a~~~~~----D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~ 548 (630)
..++.+|+.+.....+....+...++.+.++..++ |..+...||+++++..++++|. .+| .++++|||+.
T Consensus 100 ~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LS~Gq~qrv~LAraL~-----~~P-~lLllDEP~~ 173 (648)
T PRK10535 100 HLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIARALM-----NGG-QVILADEPTG 173 (648)
T ss_pred CCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhcCCcccCCHHHHHHHHHHHHHh-----cCC-CEEEEECCCC
Confidence 67899999764322222222222233333333232 3446677999999999999999 788 5666999999
Q ss_pred CccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 549 GNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 549 g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
|+|...+. .+.+.+.++.. .+.+.+++|+
T Consensus 174 gLD~~s~~-~l~~ll~~l~~----~g~tilivsH 202 (648)
T PRK10535 174 ALDSHSGE-EVMAILHQLRD----RGHTVIIVTH 202 (648)
T ss_pred CCCHHHHH-HHHHHHHHHHh----cCCEEEEECC
Confidence 99987653 44455555432 2567788887
No 333
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.43 E-value=2.5e-13 Score=139.29 Aligned_cols=158 Identities=11% Similarity=0.089 Sum_probs=104.3
Q ss_pred hhhhhhhhc-----cCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccC-CCc
Q psy11993 399 LRDALEAKK-----QGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLH-PAA 472 (630)
Q Consensus 399 L~~i~~~i~-----~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~-~~~ 472 (630)
+.++++.+. +| ++++|+||||+||||+++.|++++.++.|+|.+.+. +. .++.+.. ...
T Consensus 10 ~~~~~l~~~~~~i~~G--e~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~---~i----------~~~~q~~~~~~ 74 (246)
T cd03237 10 LGEFTLEVEGGSISES--EVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELD---TV----------SYKPQYIKADY 74 (246)
T ss_pred cCcEEEEEecCCcCCC--CEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCc---eE----------EEecccccCCC
Confidence 444555544 56 899999999999999999999999999999987653 11 1222221 234
Q ss_pred CCcchhhhHhhhccCCCCHHHHHHHHHHHhhhcC-CCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCcc
Q psy11993 473 KHGGREMVQLFEKGYGKDPAEIAFRAISHARDMH-IDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNE 551 (630)
Q Consensus 473 ~~tv~env~l~~~~~~~d~~~ia~~ai~~a~~~~-~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~D 551 (630)
.+|+.+++..+....... .....++++.+.... .+..+-..||+++++..++++|+ .+| .++++|||+.++|
T Consensus 75 ~~tv~e~l~~~~~~~~~~-~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~iaraL~-----~~p-~llllDEPt~~LD 147 (246)
T cd03237 75 EGTVRDLLSSITKDFYTH-PYFKTEIAKPLQIEQILDREVPELSGGELQRVAIAACLS-----KDA-DIYLLDEPSAYLD 147 (246)
T ss_pred CCCHHHHHHHHhhhcccc-HHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHh-----cCC-CEEEEeCCcccCC
Confidence 578888886543222211 112233343332221 23445678999999999999999 788 5666999999999
Q ss_pred HHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 552 AVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 552 av~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
...+. .+.+.+..+.. ..+.+.|++|+
T Consensus 148 ~~~~~-~l~~~l~~~~~---~~~~tiiivsH 174 (246)
T cd03237 148 VEQRL-MASKVIRRFAE---NNEKTAFVVEH 174 (246)
T ss_pred HHHHH-HHHHHHHHHHH---hcCCEEEEEeC
Confidence 87654 44455555432 12467788887
No 334
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.43 E-value=8.5e-13 Score=130.14 Aligned_cols=194 Identities=17% Similarity=0.156 Sum_probs=127.6
Q ss_pred hhhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccCC---Cc
Q psy11993 396 VDILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHP---AA 472 (630)
Q Consensus 396 ~~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~---~~ 472 (630)
..+|+++++++..| .++.++|.||+||||+++.||+.+.+++|+|.|.+.|+-+.+....-...++.+ |.+. .+
T Consensus 19 k~~l~~~sL~I~~g--~FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVtk~~~~~RA~~larVf-Qdp~~gt~~ 95 (263)
T COG1101 19 KRALNGLSLEIAEG--DFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRANLLARVF-QDPLAGTAP 95 (263)
T ss_pred HHHHhcCceeecCC--ceEEEEcCCCccHHHHHHHhhCccccCCceEEECceecccCCHHHHhhHHHHHh-cchhhCCcc
Confidence 45889999999999 999999999999999999999999999999999999998888764444444444 4333 77
Q ss_pred CCcchhhhHhhhcc---CCCCHH------HHHHHHHHHhhhcCCCee----eeccccchhchHHHHHHHHhhhhhcCCCe
Q psy11993 473 KHGGREMVQLFEKG---YGKDPA------EIAFRAISHARDMHIDVV----LIDTAGRMQDNEPLMRALAKLVKVNQPDL 539 (630)
Q Consensus 473 ~~tv~env~l~~~~---~~~d~~------~ia~~ai~~a~~~~~D~v----lIDTaGr~~~~~~L~~aL~kl~~~~~Pd~ 539 (630)
.+|+.||+.+.... .+...+ +..++-+..+. .++.-. +-=.||++.|-..|+.+.. +|..
T Consensus 96 ~lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~-lgLenrL~~~iglLSGGQRQalsL~MAtl------~~pk 168 (263)
T COG1101 96 ELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLG-LGLENRLSDRIGLLSGGQRQALSLLMATL------HPPK 168 (263)
T ss_pred cccHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcc-cchhhhhcChhhhccchHHHHHHHHHHhc------CCCc
Confidence 89999999987642 122221 11111111111 122222 2334788776555544433 4558
Q ss_pred EEEEeccccCccHHHHH---HHHHHHHhhcccCCCCCCeeEEEEcccCCcCccHHHHHHHHHHhCCcEEEEecCCCCccC
Q psy11993 540 LLFVGEALVGNEAVDQL---VKFNNAMADHSLSDNPHLIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGTGQTYTDL 616 (630)
Q Consensus 540 VLlV~E~~~g~Dav~ql---~~f~~~l~~~~~~~~~~~i~gIIlTK~D~~~~~~G~~ls~~~~~g~PI~fvg~Gq~v~DL 616 (630)
+|++||-++.+|+-... ....+.+. ...++.+++|+- .-. +..+|....-+-.|+-|-|+
T Consensus 169 iLLLDEHTAALDPkta~~vm~lT~kiV~-------~~klTtlMVTHn------m~~----Al~yG~RlImLh~G~IvlDv 231 (263)
T COG1101 169 ILLLDEHTAALDPKTAEFVMELTAKIVE-------EHKLTTLMVTHN------MED----ALDYGNRLIMLHSGKIVLDV 231 (263)
T ss_pred EEEecchhhcCCcchHHHHHHHHHHHHH-------hcCCceEEEecc------HHH----HHhhCCeEEEEeCCeEEEEc
Confidence 88899999999965332 22233333 246999999972 111 23456666666667665443
No 335
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=99.43 E-value=1.8e-13 Score=140.69 Aligned_cols=158 Identities=19% Similarity=0.196 Sum_probs=105.0
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccCC-CcC--
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHP-AAK-- 473 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~-~~~-- 473 (630)
.+|++++|.+.+| ++++|+||||+||||+++.|++.+.+..|+|.+.+. ....++.+... .+.
T Consensus 18 ~vl~~vs~~i~~G--e~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~~------------~~i~~v~q~~~~~~~l~ 83 (251)
T PRK09544 18 RVLSDVSLELKPG--KILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGK------------LRIGYVPQKLYLDTTLP 83 (251)
T ss_pred eEEEeEEEEEcCC--cEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCc------------cCEEEeccccccccccC
Confidence 4789999999999 999999999999999999999999999999987541 01222222211 111
Q ss_pred CcchhhhHhhhccCCCCHHHHHHHHHHHhhhcC-CCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCccH
Q psy11993 474 HGGREMVQLFEKGYGKDPAEIAFRAISHARDMH-IDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEA 552 (630)
Q Consensus 474 ~tv~env~l~~~~~~~d~~~ia~~ai~~a~~~~-~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~Da 552 (630)
.++.+++.+.. +... ..+..+++.+.... .+..+...||+++++..++++|. .+| .++++|||+.|+|.
T Consensus 84 ~~~~~~~~~~~---~~~~-~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~-----~~p-~lllLDEPt~~LD~ 153 (251)
T PRK09544 84 LTVNRFLRLRP---GTKK-EDILPALKRVQAGHLIDAPMQKLSGGETQRVLLARALL-----NRP-QLLVLDEPTQGVDV 153 (251)
T ss_pred hhHHHHHhccc---cccH-HHHHHHHHHcCChHHHhCChhhCCHHHHHHHHHHHHHh-----cCC-CEEEEeCCCcCCCH
Confidence 34555543321 1111 22334444433222 23446678999999999999999 788 56779999999998
Q ss_pred HHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 553 VDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 553 v~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
..+. .+.+.+.++... .+.+.|++|+
T Consensus 154 ~~~~-~l~~~L~~~~~~---~g~tiiivsH 179 (251)
T PRK09544 154 NGQV-ALYDLIDQLRRE---LDCAVLMVSH 179 (251)
T ss_pred HHHH-HHHHHHHHHHHh---cCCEEEEEec
Confidence 7654 444555544321 1456677776
No 336
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.43 E-value=5.9e-13 Score=147.86 Aligned_cols=196 Identities=18% Similarity=0.195 Sum_probs=137.0
Q ss_pred hhhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhc----CCeEEEeecccCCccHHHHHHHHHhhhcccCC-
Q psy11993 396 VDILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIEN----NLNVLIAACDTFRAGAVEQLRTHVRHLCSLHP- 470 (630)
Q Consensus 396 ~~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~----ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~- 470 (630)
..++++|||.+.+| ++++|||.+||||||++..|.+++... +|+|++.+.|.....+.+.-+.....+...++
T Consensus 22 ~~~v~~vsf~v~~G--E~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~~r~~rg~~Ia~i~Q~ 99 (539)
T COG1123 22 VPAVRDVSFEVEPG--EILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQD 99 (539)
T ss_pred eeeeecceEEecCC--cEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHHHHHhccccEEEEecC
Confidence 46899999999999 999999999999999999999999877 69999999998776665443333344433332
Q ss_pred -----CcCCcchhhhH-hhhccCCCCHHHHHHHHHHHhhhcCC------CeeeeccccchhchHHHHHHHHhhhhhcCCC
Q psy11993 471 -----AAKHGGREMVQ-LFEKGYGKDPAEIAFRAISHARDMHI------DVVLIDTAGRMQDNEPLMRALAKLVKVNQPD 538 (630)
Q Consensus 471 -----~~~~tv~env~-l~~~~~~~d~~~ia~~ai~~a~~~~~------D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd 538 (630)
.|-+++.+-+. .+...+.....+...++++.++.-++ +...-..||||+|+..++.+|+ .+|+
T Consensus 100 p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~~yPheLSGG~rQRv~iAmALa-----~~P~ 174 (539)
T COG1123 100 PMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQRVMIAMALA-----LKPK 174 (539)
T ss_pred chhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhhccCCcccCchHHHHHHHHHHHh-----CCCC
Confidence 34466655443 23323323355555566665554333 3356788999999999999999 9995
Q ss_pred eEEEEeccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcccCCcCccHHHHHHHHHHhCCcEEEEecCCCC
Q psy11993 539 LLLFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGTGQTY 613 (630)
Q Consensus 539 ~VLlV~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK~D~~~~~~G~~ls~~~~~g~PI~fvg~Gq~v 613 (630)
+|+.||||+++|+..|...+ +.++++.. ..++..+++|+ | .|.+-.++. -|...-.|+-+
T Consensus 175 -LLIaDEPTTaLDvt~q~qIL-~llk~l~~---e~g~a~l~ITH----D--l~Vva~~aD----rv~Vm~~G~iV 234 (539)
T COG1123 175 -LLIADEPTTALDVTTQAQIL-DLLKDLQR---ELGMAVLFITH----D--LGVVAELAD----RVVVMYKGEIV 234 (539)
T ss_pred -EEEECCCccccCHHHHHHHH-HHHHHHHH---HcCcEEEEEcC----C--HHHHHHhcC----eEEEEECCEEE
Confidence 55599999999998876554 34555442 34788999997 2 444444444 46666666553
No 337
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=99.42 E-value=5.1e-13 Score=142.44 Aligned_cols=154 Identities=18% Similarity=0.124 Sum_probs=105.5
Q ss_pred EEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccCC-CcCCcchhhhHhhhccCCCCHHHH
Q psy11993 416 FCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHP-AAKHGGREMVQLFEKGYGKDPAEI 494 (630)
Q Consensus 416 lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~-~~~~tv~env~l~~~~~~~d~~~i 494 (630)
|+|||||||||++++|++++.+..|+|.+.+.+....... +....++.+... ++.+|+.+|+.+....++......
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~i~g~~i~~~~~~---~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~ 77 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPH---LRHINMVFQSYALFPHMTVEENVAFGLKMRKVPRAEI 77 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHH---HCCEEEEecCccccCCCcHHHHHHHHHhhcCCCHHHH
Confidence 5899999999999999999999999999998887543321 233444444433 557899999987643333333222
Q ss_pred ---HHHHHHHhhhcC-CCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCccHHHHHHHHHHHHhhcccCC
Q psy11993 495 ---AFRAISHARDMH-IDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQLVKFNNAMADHSLSD 570 (630)
Q Consensus 495 ---a~~ai~~a~~~~-~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~Dav~ql~~f~~~l~~~~~~~ 570 (630)
+.++++.+.... .+..+...||+++++..++++|. .+| .++++|||+.++|...+. .+.+.+.++..
T Consensus 78 ~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qRvalaraL~-----~~p-~lllLDEP~s~LD~~~~~-~l~~~l~~l~~-- 148 (325)
T TIGR01187 78 KPRVLEALRLVQLEEFADRKPHQLSGGQQQRVALARALV-----FKP-KILLLDEPLSALDKKLRD-QMQLELKTIQE-- 148 (325)
T ss_pred HHHHHHHHHHcCCcchhcCChhhCCHHHHHHHHHHHHHH-----hCC-CEEEEeCCCccCCHHHHH-HHHHHHHHHHH--
Confidence 233343333322 24446678999999999999999 788 566699999999987653 34445554432
Q ss_pred CCCCeeEEEEcc
Q psy11993 571 NPHLIDGIVLTK 582 (630)
Q Consensus 571 ~~~~i~gIIlTK 582 (630)
..+.+.|++|+
T Consensus 149 -~~g~tiiivTH 159 (325)
T TIGR01187 149 -QLGITFVFVTH 159 (325)
T ss_pred -hcCCEEEEEeC
Confidence 12467777776
No 338
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=99.42 E-value=4e-13 Score=152.99 Aligned_cols=190 Identities=14% Similarity=0.072 Sum_probs=129.9
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccCCCcCCcc
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHPAAKHGG 476 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~~~~~tv 476 (630)
.+|++++|.+++| ++++|+||||+||||++..|++++.|+.|+|.+.+.|+.... ...++.+..++.+.......|+
T Consensus 356 ~~l~~vs~~i~~G--~~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~~~g~~i~~~~-~~~~~~~i~~v~q~~~lf~~ti 432 (555)
T TIGR01194 356 FALGPIDLRIAQG--DIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADS-RDDYRDLFSAIFADFHLFDDLI 432 (555)
T ss_pred ceeccceEEEcCC--cEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCC-HHHHHhhCcEEccChhhhhhhh
Confidence 4899999999999 999999999999999999999999999999999998875443 4466666666666555555677
Q ss_pred hhhhHhhhccCCCCHHHHHHHHHHHhhhc--------CCCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEecccc
Q psy11993 477 REMVQLFEKGYGKDPAEIAFRAISHARDM--------HIDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALV 548 (630)
Q Consensus 477 ~env~l~~~~~~~d~~~ia~~ai~~a~~~--------~~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~ 548 (630)
++|.. ...+ .+...++++.+... ++|.. ...|||++++..++|+|. .+| .++++|||++
T Consensus 433 ~~n~~-----~~~~-~~~~~~~~~~~~l~~~~~~lp~g~~t~-~~LSgGq~qRlalaRall-----~~~-~ililDE~ts 499 (555)
T TIGR01194 433 GPDEG-----EHAS-LDNAQQYLQRLEIADKVKIEDGGFSTT-TALSTGQQKRLALICAWL-----EDR-PILLFDEWAA 499 (555)
T ss_pred hcccc-----cchh-HHHHHHHHHHcCCchhhcccccccCCc-ccCCHHHHHHHHHHHHHH-----cCC-CEEEEeCCcc
Confidence 76631 0111 12233444443221 22322 568999999999999999 777 5666999999
Q ss_pred CccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcccCCcCccHHHHHHHHHHhCCcEEEEecCCCCccCC
Q psy11993 549 GNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGTGQTYTDLK 617 (630)
Q Consensus 549 g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK~D~~~~~~G~~ls~~~~~g~PI~fvg~Gq~v~DL~ 617 (630)
++|.......+...+..+.. .+.+.|++|+=.+ .+.. --.|..+..|+-+.++.
T Consensus 500 ~LD~~~~~~i~~~l~~~~~~----~~~tiiiisH~~~-------~~~~----~d~i~~l~~G~i~~~~~ 553 (555)
T TIGR01194 500 DQDPAFKRFFYEELLPDLKR----QGKTIIIISHDDQ-------YFEL----ADQIIKLAAGCIVKDTE 553 (555)
T ss_pred CCCHHHHHHHHHHHHHHHHh----CCCEEEEEeccHH-------HHHh----CCEEEEEECCEEEEecC
Confidence 99987754433322222211 2567889987211 1221 22467777787666654
No 339
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.41 E-value=4.5e-13 Score=150.20 Aligned_cols=174 Identities=16% Similarity=0.087 Sum_probs=111.9
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHh-cCCeEEEeecccCCccHHHHHHHHHhhhcccCC-Cc--
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIE-NNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHP-AA-- 472 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~-~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~-~~-- 472 (630)
.+|++++|.+.+| ++++|+|||||||||+++.|++.+.+ ..|+|.+.+.+..........+....++.+... ..
T Consensus 274 ~il~~vsl~i~~G--e~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 351 (490)
T PRK10938 274 PILHNLSWQVNPG--EHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDIKKHIGYVSSSLHLDYRV 351 (490)
T ss_pred eEEeeceEEEcCC--CEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCHHHHHhhceEECHHHHhhccc
Confidence 4789999999999 99999999999999999999997654 589999988764221111223333444443221 11
Q ss_pred CCcchhhhHhh-hc---cCC-CCH--HHHHHHHHHHhhhcC--CCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEE
Q psy11993 473 KHGGREMVQLF-EK---GYG-KDP--AEIAFRAISHARDMH--IDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFV 543 (630)
Q Consensus 473 ~~tv~env~l~-~~---~~~-~d~--~~ia~~ai~~a~~~~--~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV 543 (630)
..++.+++... .. .+. ... ...+.++++.+.... .+..+-..|||++++..++++|. .+| .+|++
T Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~-----~~p-~lllL 425 (490)
T PRK10938 352 STSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTADAPFHSLSWGQQRLALIVRALV-----KHP-TLLIL 425 (490)
T ss_pred CCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchhhccCchhhCCHHHHHHHHHHHHHh-----cCC-CEEEE
Confidence 23455544321 10 111 111 122334444443332 24456788999999999999999 788 56679
Q ss_pred eccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 544 GEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 544 ~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
|||+.|+|...+ ..+.+.+.++... ...+.|++|+
T Consensus 426 DEPt~gLD~~~~-~~l~~~L~~l~~~---~~~tviivsH 460 (490)
T PRK10938 426 DEPLQGLDPLNR-QLVRRFVDVLISE---GETQLLFVSH 460 (490)
T ss_pred cCccccCCHHHH-HHHHHHHHHHHhc---CCcEEEEEec
Confidence 999999998765 4455566665432 1245677777
No 340
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.41 E-value=6.1e-13 Score=165.49 Aligned_cols=173 Identities=14% Similarity=0.132 Sum_probs=123.7
Q ss_pred hhhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEe-ecccCCccHHHHHHHHHhhhcccCCCcCC
Q psy11993 396 VDILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIA-ACDTFRAGAVEQLRTHVRHLCSLHPAAKH 474 (630)
Q Consensus 396 ~~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~-~~Dt~R~ga~eQLr~~~~~l~~~~~~~~~ 474 (630)
..+|++++|.+++| ++++|||||||||||+++.|++++.|..|+|.+. +.|.... ....+|....++.+.+.....
T Consensus 398 ~~vL~~isl~i~~G--e~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~i~~g~~i~~~-~~~~lr~~Ig~V~Q~~~LF~~ 474 (1466)
T PTZ00265 398 VEIYKDLNFTLTEG--KTYAFVGESGCGKSTILKLIERLYDPTEGDIIINDSHNLKDI-NLKWWRSKIGVVSQDPLLFSN 474 (1466)
T ss_pred CceeccceEEEcCC--CEEEEECCCCCCHHHHHHHHHHhccCCCCeEEEeCCcchhhC-CHHHHHHhccEecccccchhc
Confidence 35899999999999 9999999999999999999999999999999995 4665332 234677777777776665568
Q ss_pred cchhhhHhhhcc----------C---------------------------------------------CCCHHHHHHHHH
Q psy11993 475 GGREMVQLFEKG----------Y---------------------------------------------GKDPAEIAFRAI 499 (630)
Q Consensus 475 tv~env~l~~~~----------~---------------------------------------------~~d~~~ia~~ai 499 (630)
|+++|+.+.... + ..+. +.+.+++
T Consensus 475 TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~v~~a~ 553 (1466)
T PTZ00265 475 SIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEMRKNYQTIKD-SEVVDVS 553 (1466)
T ss_pred cHHHHHHhcCCCccccchhccccccccccccccccccccccccccchhhhcccccchhhhhhcccccccCCH-HHHHHHH
Confidence 999999874210 0 0001 1223333
Q ss_pred HHhhh--------cCCCee----eeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCccHHHHHHHHHHHHhhcc
Q psy11993 500 SHARD--------MHIDVV----LIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQLVKFNNAMADHS 567 (630)
Q Consensus 500 ~~a~~--------~~~D~v----lIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~Dav~ql~~f~~~l~~~~ 567 (630)
+.+.. .++|.. ....|||++|+..++|+|. .+| .+|++|||++++|...+. .+.+.+.++.
T Consensus 554 ~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAll-----~~P-~ILlLDEpTSaLD~~se~-~i~~~L~~~~ 626 (1466)
T PTZ00265 554 KKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAII-----RNP-KILILDEATSSLDNKSEY-LVQKTINNLK 626 (1466)
T ss_pred HHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHHHHh-----cCC-CEEEEeCcccccCHHHHH-HHHHHHHHHh
Confidence 33221 233433 3457999999999999999 788 677799999999987654 4455665553
Q ss_pred cCCCCCCeeEEEEcc
Q psy11993 568 LSDNPHLIDGIVLTK 582 (630)
Q Consensus 568 ~~~~~~~i~gIIlTK 582 (630)
. ..+.+.|++|+
T Consensus 627 ~---~~g~TvIiIsH 638 (1466)
T PTZ00265 627 G---NENRITIIIAH 638 (1466)
T ss_pred h---cCCCEEEEEeC
Confidence 2 12467788886
No 341
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=99.40 E-value=1e-12 Score=151.39 Aligned_cols=170 Identities=15% Similarity=0.104 Sum_probs=121.1
Q ss_pred hhhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhc---CCeEEEeecccCCccHHHHHHHHHhhhcccCC-C
Q psy11993 396 VDILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIEN---NLNVLIAACDTFRAGAVEQLRTHVRHLCSLHP-A 471 (630)
Q Consensus 396 ~~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~---ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~-~ 471 (630)
..+|+++++.+.+| ++++|+||||+||||++..|++...+. .|+|.+.+.+.. ...++....++.+... +
T Consensus 38 ~~iL~~vs~~i~~G--e~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~----~~~~~~~i~yv~Q~~~~~ 111 (617)
T TIGR00955 38 KHLLKNVSGVAKPG--ELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPID----AKEMRAISAYVQQDDLFI 111 (617)
T ss_pred cccccCCEEEEeCC--eEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECC----HHHHhhhceeeccccccC
Confidence 45899999999999 999999999999999999999987664 689999987752 1345556666666443 6
Q ss_pred cCCcchhhhHhhhccCC---CCHHHH---HHHHHHHhhhcC-CCeeeec------cccchhchHHHHHHHHhhhhhcCCC
Q psy11993 472 AKHGGREMVQLFEKGYG---KDPAEI---AFRAISHARDMH-IDVVLID------TAGRMQDNEPLMRALAKLVKVNQPD 538 (630)
Q Consensus 472 ~~~tv~env~l~~~~~~---~d~~~i---a~~ai~~a~~~~-~D~vlID------TaGr~~~~~~L~~aL~kl~~~~~Pd 538 (630)
+.+|+++|+.+...... ....+. +.+.++.+...+ .|..+.+ .||+++++..++++|. .+|
T Consensus 112 ~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~-----~~p- 185 (617)
T TIGR00955 112 PTLTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELL-----TDP- 185 (617)
T ss_pred ccCcHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHH-----cCC-
Confidence 67899999987653321 122222 334444433322 2444443 7999999999999999 888
Q ss_pred eEEEEeccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 539 LLLFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 539 ~VLlV~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
.++++|||+.|+|+..... +.+.+++++. .+.+.|+.++
T Consensus 186 ~vlllDEPtsgLD~~~~~~-l~~~L~~l~~----~g~tvi~~~h 224 (617)
T TIGR00955 186 PLLFCDEPTSGLDSFMAYS-VVQVLKGLAQ----KGKTIICTIH 224 (617)
T ss_pred CEEEeeCCCcchhHHHHHH-HHHHHHHHHh----CCCEEEEEeC
Confidence 5677999999999887643 4455665543 2455566665
No 342
>KOG0057|consensus
Probab=99.40 E-value=6.7e-13 Score=145.47 Aligned_cols=155 Identities=17% Similarity=0.125 Sum_probs=117.2
Q ss_pred hhhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccCCCcCCc
Q psy11993 396 VDILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHPAAKHG 475 (630)
Q Consensus 396 ~~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~~~~~t 475 (630)
..+|++++|+++.| +-++|||+|||||||.++.|-+++. ..|+|+|.+.|+.+.. .+-+|....+++|+.+.+..|
T Consensus 365 ~~iL~gvsf~I~kG--ekVaIvG~nGsGKSTilr~LlrF~d-~sG~I~IdG~dik~~~-~~SlR~~Ig~VPQd~~LFndT 440 (591)
T KOG0057|consen 365 RKVLKGVSFTIPKG--EKVAIVGSNGSGKSTILRLLLRFFD-YSGSILIDGQDIKEVS-LESLRQSIGVVPQDSVLFNDT 440 (591)
T ss_pred CceecceeEEecCC--CEEEEECCCCCCHHHHHHHHHHHhc-cCCcEEECCeeHhhhC-hHHhhhheeEeCCcccccchh
Confidence 35899999999999 9999999999999999999999998 8999999999985543 467888899999988888899
Q ss_pred chhhhHhhhccCCCCHHHHHHHHHHHhhh--------cCCCeeee----ccccchhchHHHHHHHHhhhhhcCCCeEEEE
Q psy11993 476 GREMVQLFEKGYGKDPAEIAFRAISHARD--------MHIDVVLI----DTAGRMQDNEPLMRALAKLVKVNQPDLLLFV 543 (630)
Q Consensus 476 v~env~l~~~~~~~d~~~ia~~ai~~a~~--------~~~D~vlI----DTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV 543 (630)
+..|+.+.... ....++...+ +.+.. .+|+..+. -.|||+.|+..+||++. -+| .|++.
T Consensus 441 Il~NI~YGn~s--as~eeV~e~~-k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~l-----Kda-~Il~~ 511 (591)
T KOG0057|consen 441 ILYNIKYGNPS--ASDEEVVEAC-KRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFL-----KDA-PILLL 511 (591)
T ss_pred HHHHhhcCCCC--cCHHHHHHHH-HHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHh-----cCC-CeEEe
Confidence 99999764321 2222322211 11111 13333332 24899999999999998 555 57789
Q ss_pred eccccCccHHHHHHHHHHHH
Q psy11993 544 GEALVGNEAVDQLVKFNNAM 563 (630)
Q Consensus 544 ~E~~~g~Dav~ql~~f~~~l 563 (630)
||||+.+|.......+.-.+
T Consensus 512 DEaTS~LD~~TE~~i~~~i~ 531 (591)
T KOG0057|consen 512 DEATSALDSETEREILDMIM 531 (591)
T ss_pred cCcccccchhhHHHHHHHHH
Confidence 99999999887766555433
No 343
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.39 E-value=4.4e-13 Score=152.66 Aligned_cols=158 Identities=21% Similarity=0.106 Sum_probs=107.9
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccCC-CcCCc
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHP-AAKHG 475 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~-~~~~t 475 (630)
.+|++++|.+.+| ++++|+|||||||||++++|++.+.+..|.|.+... ....++.+.+. ++.+|
T Consensus 21 ~il~~vs~~i~~G--e~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~~------------~~i~~v~Q~~~~~~~~t 86 (556)
T PRK11819 21 QILKDISLSFFPG--AKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAPG------------IKVGYLPQEPQLDPEKT 86 (556)
T ss_pred eeeeCceEEECCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC------------CEEEEEecCCCCCCCCc
Confidence 4899999999999 999999999999999999999999999999987421 01233333322 44578
Q ss_pred chhhhHhhhcc--------------CCCC-------------------------HHHHHHHHHHHhhhcCCCeeeecccc
Q psy11993 476 GREMVQLFEKG--------------YGKD-------------------------PAEIAFRAISHARDMHIDVVLIDTAG 516 (630)
Q Consensus 476 v~env~l~~~~--------------~~~d-------------------------~~~ia~~ai~~a~~~~~D~vlIDTaG 516 (630)
+.+|+.+.... +... ....+..+++.+.....+..+-+.||
T Consensus 87 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~LSg 166 (556)
T PRK11819 87 VRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCPPWDAKVTKLSG 166 (556)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCCCCcccCchhhcCH
Confidence 88888652110 0100 00112222222222223455667899
Q ss_pred chhchHHHHHHHHhhhhhcCCCeEEEEeccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 517 RMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 517 r~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
|++++..++++|. .+| .+|++|||++++|...+. .+.+.+.++. .+.|++|+
T Consensus 167 Gqkqrv~la~al~-----~~p-~vlLLDEPt~~LD~~~~~-~l~~~L~~~~-------~tviiisH 218 (556)
T PRK11819 167 GERRRVALCRLLL-----EKP-DMLLLDEPTNHLDAESVA-WLEQFLHDYP-------GTVVAVTH 218 (556)
T ss_pred HHHHHHHHHHHHh-----CCC-CEEEEcCCCCcCChHHHH-HHHHHHHhCC-------CeEEEEeC
Confidence 9999999999999 788 467799999999987754 3445565442 35677776
No 344
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.39 E-value=5e-13 Score=151.32 Aligned_cols=158 Identities=15% Similarity=0.061 Sum_probs=104.0
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccC-CCcCCc
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLH-PAAKHG 475 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~-~~~~~t 475 (630)
.+|++++|.+.+| ++++|+|||||||||+++.|++.+.+..|+|.+.+.. + ..++.+.. .++.+|
T Consensus 15 ~il~~vsl~i~~G--e~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~--~----------i~~~~q~~~~~~~~t 80 (530)
T PRK15064 15 PLFENISVKFGGG--NRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPNE--R----------LGKLRQDQFAFEEFT 80 (530)
T ss_pred EeEeCCEEEECCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCC--E----------EEEEeccCCcCCCCc
Confidence 4789999999999 9999999999999999999999999999999875421 1 11222211 133456
Q ss_pred chhhhHhhh-----------------------------------ccCCCCHHHHHHHHHHHhhhcCC--Ceeeeccccch
Q psy11993 476 GREMVQLFE-----------------------------------KGYGKDPAEIAFRAISHARDMHI--DVVLIDTAGRM 518 (630)
Q Consensus 476 v~env~l~~-----------------------------------~~~~~d~~~ia~~ai~~a~~~~~--D~vlIDTaGr~ 518 (630)
+.+++.+.. ..++.+....+.++++.+..... +..+-+.|||+
T Consensus 81 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGq 160 (530)
T PRK15064 81 VLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEEQHYGLMSEVAPGW 160 (530)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChhHhcCchhhcCHHH
Confidence 666654311 00011111122233333332211 23356789999
Q ss_pred hchHHHHHHHHhhhhhcCCCeEEEEeccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 519 QDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 519 ~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
+++..++++|. .+| .+|++|||++++|..... .+.+.+.+ .+.+.|++|+
T Consensus 161 ~qrv~lA~aL~-----~~p-~lLlLDEPt~~LD~~~~~-~l~~~l~~-------~~~tiiivsH 210 (530)
T PRK15064 161 KLRVLLAQALF-----SNP-DILLLDEPTNNLDINTIR-WLEDVLNE-------RNSTMIIISH 210 (530)
T ss_pred HHHHHHHHHHh-----cCC-CEEEEcCCCcccCHHHHH-HHHHHHHh-------CCCeEEEEeC
Confidence 99999999999 788 567799999999987754 34445532 2466777776
No 345
>PTZ00243 ABC transporter; Provisional
Probab=99.39 E-value=9.5e-13 Score=164.89 Aligned_cols=168 Identities=15% Similarity=0.091 Sum_probs=128.9
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccCCCcCCcc
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHPAAKHGG 476 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~~~~~tv 476 (630)
.+|++|+|.+++| +.++|||+||+||||++..|.+++.+.+|+|+|.+.|+.+.+ ...||....+++|.+..+..|+
T Consensus 1324 ~vL~~vsf~I~~G--ekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~-l~~LR~~I~iVpQdp~LF~gTI 1400 (1560)
T PTZ00243 1324 LVLRGVSFRIAPR--EKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYG-LRELRRQFSMIPQDPVLFDGTV 1400 (1560)
T ss_pred ceeecceEEECCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCC-HHHHHhcceEECCCCccccccH
Confidence 4899999999999 999999999999999999999999999999999999996665 4578888899999888788999
Q ss_pred hhhhHhhhccCCCCHHHHHHHHHHHhhh--------cCCCeeeec----cccchhchHHHHHHHHhhhhhcCCCeEEEEe
Q psy11993 477 REMVQLFEKGYGKDPAEIAFRAISHARD--------MHIDVVLID----TAGRMQDNEPLMRALAKLVKVNQPDLLLFVG 544 (630)
Q Consensus 477 ~env~l~~~~~~~d~~~ia~~ai~~a~~--------~~~D~vlID----TaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~ 544 (630)
++||..+. ..+..+ ..+|++.+.. .++|..+.+ .|||++|+..|+|+|. .++..+|++|
T Consensus 1401 reNIdp~~---~~sdee-I~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL-----~~~~~ILlLD 1471 (1560)
T PTZ00243 1401 RQNVDPFL---EASSAE-VWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALL-----KKGSGFILMD 1471 (1560)
T ss_pred HHHhCccc---CCCHHH-HHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHh-----cCCCCEEEEe
Confidence 99997643 122333 3344443321 356766543 6999999999999998 5423688899
Q ss_pred ccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 545 EALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 545 E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
||++..|..... .+.+.+.+.. .+.+.|++++
T Consensus 1472 EATSaLD~~te~-~Iq~~L~~~~-----~~~TvI~IAH 1503 (1560)
T PTZ00243 1472 EATANIDPALDR-QIQATVMSAF-----SAYTVITIAH 1503 (1560)
T ss_pred CCCccCCHHHHH-HHHHHHHHHC-----CCCEEEEEec
Confidence 999999976543 3344554432 2467788876
No 346
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=99.39 E-value=6.9e-13 Score=150.75 Aligned_cols=185 Identities=12% Similarity=0.031 Sum_probs=124.3
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccCCCcCCcc
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHPAAKHGG 476 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~~~~~tv 476 (630)
.+|++++|.+++| +.++|+||||+||||+++.|++++.|+.|+|.+.+.|..... .+.++.+..++.+.......|+
T Consensus 337 ~~l~~i~~~i~~G--~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~-~~~~~~~i~~v~q~~~lf~~ti 413 (547)
T PRK10522 337 FSVGPINLTIKRG--ELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQ-PEDYRKLFSAVFTDFHLFDQLL 413 (547)
T ss_pred eEEecceEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCCCC-HHHHhhheEEEecChhHHHHhh
Confidence 4899999999999 999999999999999999999999999999999999875443 3456666667766555445555
Q ss_pred hhhhHhhhccCCCCHHHHHHHHHHHhhhcCCCee-------eeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccC
Q psy11993 477 REMVQLFEKGYGKDPAEIAFRAISHARDMHIDVV-------LIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVG 549 (630)
Q Consensus 477 ~env~l~~~~~~~d~~~ia~~ai~~a~~~~~D~v-------lIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g 549 (630)
++| +...+ .+...++++.+.... +.- -...|||++++..++|+|. .+| .++++|||+++
T Consensus 414 ~~n------~~~~~-~~~~~~~~~~~~l~~-~~~~~~~~~~G~~LSgGq~qRl~lARal~-----~~~-~ililDE~ts~ 479 (547)
T PRK10522 414 GPE------GKPAN-PALVEKWLERLKMAH-KLELEDGRISNLKLSKGQKKRLALLLALA-----EER-DILLLDEWAAD 479 (547)
T ss_pred ccc------cCchH-HHHHHHHHHHcCCch-hhhccccCCCCCCCCHHHHHHHHHHHHHh-----cCC-CEEEEECCCCC
Confidence 555 11111 122333444332211 111 1357999999999999999 788 56669999999
Q ss_pred ccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcccCCcCccHHHHHHHHHHhCCcEEEEecCCCC
Q psy11993 550 NEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGTGQTY 613 (630)
Q Consensus 550 ~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK~D~~~~~~G~~ls~~~~~g~PI~fvg~Gq~v 613 (630)
+|..... .+.+.+.+... ..+.+.|++|+- . +..... --|..+..|+-+
T Consensus 480 LD~~~~~-~i~~~l~~~~~---~~~~tvi~itH~------~----~~~~~~-d~i~~l~~G~i~ 528 (547)
T PRK10522 480 QDPHFRR-EFYQVLLPLLQ---EMGKTIFAISHD------D----HYFIHA-DRLLEMRNGQLS 528 (547)
T ss_pred CCHHHHH-HHHHHHHHHHH---hCCCEEEEEEec------h----HHHHhC-CEEEEEECCEEE
Confidence 9987653 34444432211 114678888872 1 112222 246777777654
No 347
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=99.38 E-value=1.3e-12 Score=131.45 Aligned_cols=179 Identities=20% Similarity=0.177 Sum_probs=118.4
Q ss_pred hhhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhccc-C--CCc
Q psy11993 396 VDILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSL-H--PAA 472 (630)
Q Consensus 396 ~~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~-~--~~~ 472 (630)
-.+|.+|++.+++| +--+|+|||||||||+++.|++.+.|..+.|.+.+.-.-+..-...+|.+.+++... + ...
T Consensus 44 k~iL~~isW~V~~g--e~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~~~~~elrk~IG~vS~~L~~~~~~ 121 (257)
T COG1119 44 KKILGDLSWQVNPG--EHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELRKRIGLVSSELHERFRV 121 (257)
T ss_pred EeeccccceeecCC--CcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCCcchHHHHHHhCccCHHHHhhccc
Confidence 46899999999999 899999999999999999999999999999999886542222225677766655421 1 123
Q ss_pred CCcchhhhHh--hh--ccC--CCCHH--HHHHHHHHHhhhcCC-CeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEE
Q psy11993 473 KHGGREMVQL--FE--KGY--GKDPA--EIAFRAISHARDMHI-DVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFV 543 (630)
Q Consensus 473 ~~tv~env~l--~~--~~~--~~d~~--~ia~~ai~~a~~~~~-D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV 543 (630)
..++++-|.- |. ..| ..++. ..+...++.+..... |.-+-..|-+++++.-++|||. .+| .+|++
T Consensus 122 ~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~~~~LS~Ge~rrvLiaRALv-----~~P-~LLiL 195 (257)
T COG1119 122 RETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFGSLSQGEQRRVLIARALV-----KDP-ELLIL 195 (257)
T ss_pred ccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhccCchhhcCHhHHHHHHHHHHHh-----cCC-CEEEe
Confidence 4445544421 11 112 12222 223333333333222 4446677999999999999999 889 56679
Q ss_pred eccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcccCC
Q psy11993 544 GEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDT 585 (630)
Q Consensus 544 ~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK~D~ 585 (630)
|||+.|+|..... .+.+.+.+... .+-..+.+++|+..+
T Consensus 196 DEP~~GLDl~~re-~ll~~l~~~~~--~~~~~~ll~VtHh~e 234 (257)
T COG1119 196 DEPAQGLDLIARE-QLLNRLEELAA--SPGAPALLFVTHHAE 234 (257)
T ss_pred cCccccCChHHHH-HHHHHHHHHhc--CCCCceEEEEEcchh
Confidence 9999999987642 33334444332 123567889998665
No 348
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.38 E-value=1.8e-12 Score=141.92 Aligned_cols=197 Identities=17% Similarity=0.170 Sum_probs=136.4
Q ss_pred HcCCCcchhhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhccc
Q psy11993 389 ILSPKRRVDILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSL 468 (630)
Q Consensus 389 il~~~~~~~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~ 468 (630)
+-.|.....+|++++|.+.+| +-|+|+|++||||||++..|++.+.++.|+|.+.+.++.-... +.++.-...+.|.
T Consensus 344 F~y~~~~~~~L~~~~l~l~~G--EkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~~~~l~~-~~~~e~i~vl~Qr 420 (573)
T COG4987 344 FTYPGQQTKALKNFNLTLAQG--EKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDE-QALRETISVLTQR 420 (573)
T ss_pred eecCCCccchhhccceeecCC--CeEEEECCCCCCHHHHHHHHHhccCCCCCeeeECCcChhhCCh-hhHHHHHhhhccc
Confidence 334666678999999999999 9999999999999999999999999999999999999844322 2256666667777
Q ss_pred CCCcCCcchhhhHhhhccCCCCHHHHHHHHHHHhhhc--------CCCeeeec----cccchhchHHHHHHHHhhhhhcC
Q psy11993 469 HPAAKHGGREMVQLFEKGYGKDPAEIAFRAISHARDM--------HIDVVLID----TAGRMQDNEPLMRALAKLVKVNQ 536 (630)
Q Consensus 469 ~~~~~~tv~env~l~~~~~~~d~~~ia~~ai~~a~~~--------~~D~vlID----TaGr~~~~~~L~~aL~kl~~~~~ 536 (630)
...+..|+++|+.+-... ...+++ .++++.+... +++.-+-| .|||++++..++|.|. .+
T Consensus 421 ~hlF~~Tlr~NL~lA~~~--AsDEel-~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAlAR~LL-----~d 492 (573)
T COG4987 421 VHLFSGTLRDNLRLANPD--ASDEEL-WAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALL-----HD 492 (573)
T ss_pred hHHHHHHHHHHHhhcCCC--CCHHHH-HHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHHHHHHHH-----cC
Confidence 677789999999885432 222222 2344333221 33334444 3899999999999998 43
Q ss_pred CCeEEEEeccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcccCCcCccHHHHHHHHHHhCCcEEEEecCCCCc
Q psy11993 537 PDLLLFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGTGQTYT 614 (630)
Q Consensus 537 Pd~VLlV~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK~D~~~~~~G~~ls~~~~~g~PI~fvg~Gq~v~ 614 (630)
. .++++||||.|+|.....+.+.-... .. .+-+.+++|+ +-.|. ..+ -.|.++-.|+.+.
T Consensus 493 a-pl~lLDEPTegLD~~TE~~vL~ll~~-~~-----~~kTll~vTH-----rL~~l--e~~----drIivl~~Gkiie 552 (573)
T COG4987 493 A-PLWLLDEPTEGLDPITERQVLALLFE-HA-----EGKTLLMVTH-----RLRGL--ERM----DRIIVLDNGKIIE 552 (573)
T ss_pred C-CeEEecCCcccCChhhHHHHHHHHHH-Hh-----cCCeEEEEec-----ccccH--hhc----CEEEEEECCeeee
Confidence 2 47779999999998876544433222 21 2567788887 12221 111 2477788786653
No 349
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.38 E-value=6e-13 Score=150.71 Aligned_cols=177 Identities=14% Similarity=0.052 Sum_probs=119.5
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccC---CCcC
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLH---PAAK 473 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~---~~~~ 473 (630)
.+|++++|.+.+| ++++|+|||||||||+++.|++.+.+..|+|.+.+.. ...++.+.. .++.
T Consensus 333 ~~l~~is~~i~~G--e~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~------------~i~~~~q~~~~~~~~~ 398 (530)
T PRK15064 333 PLFKNLNLLLEAG--ERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSENA------------NIGYYAQDHAYDFEND 398 (530)
T ss_pred eeecCcEEEECCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCce------------EEEEEcccccccCCCC
Confidence 4899999999999 9999999999999999999999999999999875421 122333321 1335
Q ss_pred CcchhhhHhhhccCCCCHHHHHHHHHHHhhhc--CCCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCcc
Q psy11993 474 HGGREMVQLFEKGYGKDPAEIAFRAISHARDM--HIDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNE 551 (630)
Q Consensus 474 ~tv~env~l~~~~~~~d~~~ia~~ai~~a~~~--~~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~D 551 (630)
+|+.+++.++.. .......+..+++.+... ..+..+-..|||++++..++++|. .+| .+|++|||+.++|
T Consensus 399 ~t~~~~~~~~~~--~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~-----~~p-~lllLDEPt~~LD 470 (530)
T PRK15064 399 LTLFDWMSQWRQ--EGDDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMM-----QKP-NVLVMDEPTNHMD 470 (530)
T ss_pred CcHHHHHHHhcc--CCccHHHHHHHHHHcCCChhHhcCcccccCHHHHHHHHHHHHHh-----cCC-CEEEEcCCCCCCC
Confidence 788888765421 111222334444444321 124557788999999999999999 778 5667999999999
Q ss_pred HHHHHHHHHHHHhhcccCCCCCCeeEEEEcccCCcCccHHHHHHHHHHhCCcEEEEecCCCC
Q psy11993 552 AVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGTGQTY 613 (630)
Q Consensus 552 av~ql~~f~~~l~~~~~~~~~~~i~gIIlTK~D~~~~~~G~~ls~~~~~g~PI~fvg~Gq~v 613 (630)
...+. .+.+.+.++ ..+.|++|+- ...+.. ..--|..+..|+-+
T Consensus 471 ~~~~~-~l~~~l~~~-------~~tvi~vsHd------~~~~~~----~~d~i~~l~~g~i~ 514 (530)
T PRK15064 471 MESIE-SLNMALEKY-------EGTLIFVSHD------REFVSS----LATRIIEITPDGVV 514 (530)
T ss_pred HHHHH-HHHHHHHHC-------CCEEEEEeCC------HHHHHH----hCCEEEEEECCeEE
Confidence 88653 444556544 2367788871 112222 22356777777643
No 350
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.38 E-value=7.5e-13 Score=150.80 Aligned_cols=158 Identities=12% Similarity=0.006 Sum_probs=111.1
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccC--CCcCC
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLH--PAAKH 474 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~--~~~~~ 474 (630)
.+|++++|.+.+| ++++|+|||||||||+++.|++.+.+..|+|.+ +.+. + ..++.+.. .++.+
T Consensus 338 ~~l~~isl~i~~G--e~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~-~~~~-~----------i~~v~q~~~~~~~~~ 403 (556)
T PRK11819 338 LLIDDLSFSLPPG--GIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKI-GETV-K----------LAYVDQSRDALDPNK 403 (556)
T ss_pred eeecceeEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEE-CCce-E----------EEEEeCchhhcCCCC
Confidence 4899999999999 999999999999999999999999999999987 3321 2 23333322 24567
Q ss_pred cchhhhHhhhccCCCC-HHHHHHHHHHHhhhcC--CCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCcc
Q psy11993 475 GGREMVQLFEKGYGKD-PAEIAFRAISHARDMH--IDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNE 551 (630)
Q Consensus 475 tv~env~l~~~~~~~d-~~~ia~~ai~~a~~~~--~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~D 551 (630)
|+.+|+.+.....+.. ....+..++..+.... .+..+-..|||++++..++++|. .+| .+|++|||+.|+|
T Consensus 404 tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~-----~~p-~lllLDEPt~~LD 477 (556)
T PRK11819 404 TVWEEISGGLDIIKVGNREIPSRAYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLK-----QGG-NVLLLDEPTNDLD 477 (556)
T ss_pred CHHHHHHhhcccccccccHHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHh-----cCC-CEEEEcCCCCCCC
Confidence 9999987643222211 1112233444443321 24456788999999999999998 788 5666999999999
Q ss_pred HHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 552 AVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 552 av~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
...+ ..+.+.+.++. + +.|++|+
T Consensus 478 ~~~~-~~l~~~l~~~~------~-tvi~vtH 500 (556)
T PRK11819 478 VETL-RALEEALLEFP------G-CAVVISH 500 (556)
T ss_pred HHHH-HHHHHHHHhCC------C-eEEEEEC
Confidence 8775 34455665542 2 5677776
No 351
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.38 E-value=7.4e-13 Score=150.70 Aligned_cols=158 Identities=12% Similarity=0.009 Sum_probs=111.5
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccC--CCcCC
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLH--PAAKH 474 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~--~~~~~ 474 (630)
.+|++++|.+.+| ++++|+|||||||||+++.|++.+.+..|.|.+ +.+. ...++.+.. .++.+
T Consensus 336 ~~l~~isl~i~~G--e~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~-~~~~-----------~i~~v~q~~~~~~~~~ 401 (552)
T TIGR03719 336 LLIDDLSFKLPPG--GIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKI-GETV-----------KLAYVDQSRDALDPNK 401 (552)
T ss_pred eeeccceEEEcCC--CEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEE-CCce-----------EEEEEeCCccccCCCC
Confidence 4899999999999 999999999999999999999999999999987 3221 123344432 24567
Q ss_pred cchhhhHhhhccCCCC-HHHHHHHHHHHhhhcC--CCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCcc
Q psy11993 475 GGREMVQLFEKGYGKD-PAEIAFRAISHARDMH--IDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNE 551 (630)
Q Consensus 475 tv~env~l~~~~~~~d-~~~ia~~ai~~a~~~~--~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~D 551 (630)
|+.+++.+....++.. ....+..++..+.... .+..+-..|||++++..++++|. .+| .+|++|||+.++|
T Consensus 402 tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGe~qrv~la~al~-----~~p-~lllLDEPt~~LD 475 (552)
T TIGR03719 402 TVWEEISGGLDIIQLGKREVPSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLK-----SGG-NVLLLDEPTNDLD 475 (552)
T ss_pred cHHHHHHhhccccccCcchHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHh-----hCC-CEEEEeCCCCCCC
Confidence 9999987653222211 1112233444443321 24446678999999999999998 788 5666999999999
Q ss_pred HHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 552 AVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 552 av~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
...+ ..+.+.+.++. + +.|++|+
T Consensus 476 ~~~~-~~l~~~l~~~~------~-~viivsH 498 (552)
T TIGR03719 476 VETL-RALEEALLEFA------G-CAVVISH 498 (552)
T ss_pred HHHH-HHHHHHHHHCC------C-eEEEEeC
Confidence 8765 34455665542 2 5677787
No 352
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.37 E-value=7.4e-13 Score=138.50 Aligned_cols=175 Identities=15% Similarity=0.128 Sum_probs=110.7
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccCCCcCCcc
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHPAAKHGG 476 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~~~~~tv 476 (630)
.+|++++|.+.+| ++++|+||||+||||+++.|++.+.+..|+|.+.+ + ..++.+.......|+
T Consensus 51 ~vL~~vs~~i~~G--e~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g----~----------i~yv~q~~~l~~~tv 114 (282)
T cd03291 51 PVLKNINLKIEKG--EMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSG----R----------ISFSSQFSWIMPGTI 114 (282)
T ss_pred cceeeeeEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC----E----------EEEEeCcccccccCH
Confidence 4889999999999 99999999999999999999999999999998754 1 122222222223578
Q ss_pred hhhhHhhhccCCCCHHHHHHHHHHH------hhh--cCCCee----eeccccchhchHHHHHHHHhhhhhcCCCeEEEEe
Q psy11993 477 REMVQLFEKGYGKDPAEIAFRAISH------ARD--MHIDVV----LIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVG 544 (630)
Q Consensus 477 ~env~l~~~~~~~d~~~ia~~ai~~------a~~--~~~D~v----lIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~ 544 (630)
.+|+.+... + .... ...++.. +.. ..++.. ....||+++++..++++|. .+| .++++|
T Consensus 115 ~enl~~~~~-~--~~~~-~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~-----~~p-~iLiLD 184 (282)
T cd03291 115 KENIIFGVS-Y--DEYR-YKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVY-----KDA-DLYLLD 184 (282)
T ss_pred HHHhhcccc-c--CHHH-HHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHh-----cCC-CEEEEE
Confidence 888765321 1 1111 1111111 110 011111 3478999999999999999 788 566699
Q ss_pred ccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcccCCcCccHHHHHHHHHHhCCcEEEEecCCCC
Q psy11993 545 EALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGTGQTY 613 (630)
Q Consensus 545 E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK~D~~~~~~G~~ls~~~~~g~PI~fvg~Gq~v 613 (630)
||+.++|...+...+...+..+.. +.+.+++|+--. .+ .. . -.+.++..|+-+
T Consensus 185 EPt~gLD~~~~~~l~~~ll~~~~~-----~~tIiiisH~~~------~~-~~---~-d~i~~l~~G~i~ 237 (282)
T cd03291 185 SPFGYLDVFTEKEIFESCVCKLMA-----NKTRILVTSKME------HL-KK---A-DKILILHEGSSY 237 (282)
T ss_pred CCCccCCHHHHHHHHHHHHHHhhC-----CCEEEEEeCChH------HH-Hh---C-CEEEEEECCEEE
Confidence 999999987654332222333321 356677776211 11 11 2 357777777643
No 353
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.37 E-value=5.7e-13 Score=135.63 Aligned_cols=143 Identities=15% Similarity=0.049 Sum_probs=101.0
Q ss_pred hhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccCC----CcCCcch
Q psy11993 402 ALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHP----AAKHGGR 477 (630)
Q Consensus 402 i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~----~~~~tv~ 477 (630)
++|..+.. .+.+|-|++|+||||++++||++.+|+.|+|.+.+.=.+-+...-.+-.|-+.++..++ ++++|++
T Consensus 17 a~~~~p~~--GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tVr 94 (352)
T COG4148 17 ANFTLPAR--GITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTVR 94 (352)
T ss_pred EeccCCCC--ceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEeeccccccceEEe
Confidence 45555442 69999999999999999999999999999999987544333322334444444444443 8899999
Q ss_pred hhhHhhhccCCCCHHHHHHHHHHHhhhcC-CCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCccHHHH
Q psy11993 478 EMVQLFEKGYGKDPAEIAFRAISHARDMH-IDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQ 555 (630)
Q Consensus 478 env~l~~~~~~~d~~~ia~~ai~~a~~~~-~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~Dav~q 555 (630)
.|+.+....... ....++++.+.... ++......||+.+|+..+.|+|. ..|+ +|+.|||++.+|....
T Consensus 95 gNL~YG~~~~~~---~~fd~iv~lLGI~hLL~R~P~~LSGGEkQRVAIGRALL-----t~P~-LLLmDEPLaSLD~~RK 164 (352)
T COG4148 95 GNLRYGMWKSMR---AQFDQLVALLGIEHLLDRYPGTLSGGEKQRVAIGRALL-----TAPE-LLLMDEPLASLDLPRK 164 (352)
T ss_pred cchhhhhcccch---HhHHHHHHHhCcHHHHhhCCCccCcchhhHHHHHHHHh-----cCCC-eeeecCchhhcccchh
Confidence 999876543311 11223333333222 25557889999999999999999 8995 5559999999986543
No 354
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.37 E-value=1.4e-12 Score=161.85 Aligned_cols=170 Identities=16% Similarity=0.098 Sum_probs=122.9
Q ss_pred hhhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHH---hcCCeEEEeecccCCccHHHHHHHHHhhhcccC-CC
Q psy11993 396 VDILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLI---ENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLH-PA 471 (630)
Q Consensus 396 ~~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~---~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~-~~ 471 (630)
..+|++|++.+.+| ++++|+||||+||||+++.|++.+. +..|+|.+.+.+.. .+++....++.+.. ..
T Consensus 776 ~~iL~~vs~~i~~G--e~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~-----~~~~~~i~yv~Q~~~~~ 848 (1394)
T TIGR00956 776 RVILNNVDGWVKPG--TLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLD-----SSFQRSIGYVQQQDLHL 848 (1394)
T ss_pred cEeeeCCEEEEECC--EEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECC-----hhhhcceeeecccccCC
Confidence 35899999999999 9999999999999999999999886 56799999988762 13455556666543 36
Q ss_pred cCCcchhhhHhhhccCC---CCHHH---HHHHHHHHhhhcCC-Ceeee----ccccchhchHHHHHHHHhhhhhcCCCeE
Q psy11993 472 AKHGGREMVQLFEKGYG---KDPAE---IAFRAISHARDMHI-DVVLI----DTAGRMQDNEPLMRALAKLVKVNQPDLL 540 (630)
Q Consensus 472 ~~~tv~env~l~~~~~~---~d~~~---ia~~ai~~a~~~~~-D~vlI----DTaGr~~~~~~L~~aL~kl~~~~~Pd~V 540 (630)
+.+|+++++.+...... ....+ .+.++++.+...++ |..+- ..||+++++..++++|. .+|+.+
T Consensus 849 ~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~~~LSgGqrqRl~Ia~aL~-----~~P~~i 923 (1394)
T TIGR00956 849 PTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGEGLNVEQRKRLTIGVELV-----AKPKLL 923 (1394)
T ss_pred CCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCCCCCCHHHhhHHHHHHHHH-----cCCCeE
Confidence 77999999987643221 12222 23445554443332 44443 58999999999999999 888668
Q ss_pred EEEeccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 541 LFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 541 LlV~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
|++|||++|+|..... .+.+.+++++. .+.+.|+.++
T Consensus 924 LlLDEPTsgLD~~~~~-~i~~~L~~la~----~g~tvI~t~H 960 (1394)
T TIGR00956 924 LFLDEPTSGLDSQTAW-SICKLMRKLAD----HGQAILCTIH 960 (1394)
T ss_pred EEEcCCCCCCCHHHHH-HHHHHHHHHHH----cCCEEEEEec
Confidence 8899999999987653 44455665543 2456666666
No 355
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.36 E-value=3.2e-12 Score=127.36 Aligned_cols=176 Identities=18% Similarity=0.152 Sum_probs=113.9
Q ss_pred hhhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHH--HHhcCCeEEEeecccCCccHHHHHHHHHhhhcccCC-Cc
Q psy11993 396 VDILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFW--LIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHP-AA 472 (630)
Q Consensus 396 ~~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~--l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~-~~ 472 (630)
..+|+++++.++.| ++.+|.||||+|||||...|++. +..+.|+|++.+.|+--....|..|.-.-...|.++ .+
T Consensus 17 keILkgvnL~v~~G--EvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ERAr~GifLafQ~P~ei~ 94 (251)
T COG0396 17 KEILKGVNLTVKEG--EVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDERARAGIFLAFQYPVEIP 94 (251)
T ss_pred hhhhcCcceeEcCC--cEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHhHHHhcCCEEeecCCccCC
Confidence 36899999999999 99999999999999999999985 478899999999999777666654432211122111 33
Q ss_pred CCcchhhhHhhhcc-CCCCH--HHHHHHHHHHhhhcCCCe------eeeccccchhchHHHHHHHHhhhhhcCCCeEEEE
Q psy11993 473 KHGGREMVQLFEKG-YGKDP--AEIAFRAISHARDMHIDV------VLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFV 543 (630)
Q Consensus 473 ~~tv~env~l~~~~-~~~d~--~~ia~~ai~~a~~~~~D~------vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV 543 (630)
-.++.+.+...... ++.+. .+....+-+.++..++|- |=.-.||+...+..+++.+. .+|..++ +
T Consensus 95 GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN~GFSGGEkKR~EilQ~~~-----lePkl~I-L 168 (251)
T COG0396 95 GVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVNEGFSGGEKKRNEILQLLL-----LEPKLAI-L 168 (251)
T ss_pred CeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccCCCcCcchHHHHHHHHHHh-----cCCCEEE-e
Confidence 34444444332211 11111 111122222223333332 23346999999999998888 8996655 8
Q ss_pred eccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcccC
Q psy11993 544 GEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFD 584 (630)
Q Consensus 544 ~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK~D 584 (630)
|||.+|+|... ++...+.+..+.. .+...+|+|+.-
T Consensus 169 DE~DSGLDIda-lk~V~~~i~~lr~----~~~~~liITHy~ 204 (251)
T COG0396 169 DEPDSGLDIDA-LKIVAEGINALRE----EGRGVLIITHYQ 204 (251)
T ss_pred cCCCcCccHHH-HHHHHHHHHHHhc----CCCeEEEEecHH
Confidence 99999998543 4555555555543 356678999854
No 356
>PRK13409 putative ATPase RIL; Provisional
Probab=99.36 E-value=1.3e-12 Score=149.52 Aligned_cols=156 Identities=15% Similarity=0.118 Sum_probs=110.6
Q ss_pred hhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccC-CCcCCcch
Q psy11993 399 LRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLH-PAAKHGGR 477 (630)
Q Consensus 399 L~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~-~~~~~tv~ 477 (630)
|+++++.+.+| ++++|+||||+||||+++.|++.+.+..|+|.+. . +. .++.+.. ..+.+|+.
T Consensus 355 l~~~s~~i~~G--eiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~---~-~i----------~y~~Q~~~~~~~~tv~ 418 (590)
T PRK13409 355 LEVEGGEIYEG--EVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE---L-KI----------SYKPQYIKPDYDGTVE 418 (590)
T ss_pred EEecceEECCC--CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEe---e-eE----------EEecccccCCCCCcHH
Confidence 77888999999 9999999999999999999999999999999874 1 21 2222221 24567999
Q ss_pred hhhHhhhccCCCCHHHHHHHHHHHhhhcC-CCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCccHHHHH
Q psy11993 478 EMVQLFEKGYGKDPAEIAFRAISHARDMH-IDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQL 556 (630)
Q Consensus 478 env~l~~~~~~~d~~~ia~~ai~~a~~~~-~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~Dav~ql 556 (630)
+++.+....+. ......++++.+.... .+.-+-.+|||++++..++++|. .+| .+|++|||++++|...+.
T Consensus 419 e~l~~~~~~~~--~~~~~~~~L~~l~l~~~~~~~~~~LSGGe~QRvaiAraL~-----~~p-~llLLDEPt~~LD~~~~~ 490 (590)
T PRK13409 419 DLLRSITDDLG--SSYYKSEIIKPLQLERLLDKNVKDLSGGELQRVAIAACLS-----RDA-DLYLLDEPSAHLDVEQRL 490 (590)
T ss_pred HHHHHHhhhcC--hHHHHHHHHHHCCCHHHHhCCcccCCHHHHHHHHHHHHHh-----cCC-CEEEEeCCccCCCHHHHH
Confidence 99876432222 1222344444433222 24556788999999999999999 778 566699999999987654
Q ss_pred HHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 557 VKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 557 ~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
.+.+.++++... .+.+.+++|+
T Consensus 491 -~l~~~l~~l~~~---~g~tviivsH 512 (590)
T PRK13409 491 -AVAKAIRRIAEE---REATALVVDH 512 (590)
T ss_pred -HHHHHHHHHHHh---CCCEEEEEeC
Confidence 445566666431 2567788887
No 357
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.36 E-value=1.3e-12 Score=151.05 Aligned_cols=158 Identities=11% Similarity=0.035 Sum_probs=109.6
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccC--CCcCC
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLH--PAAKH 474 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~--~~~~~ 474 (630)
.+|++++|.+.+| ++++|+|||||||||++++|++.+.|..|+|.+ +.+. +. .++.+.. .++.+
T Consensus 333 ~il~~vsl~i~~G--e~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~-~~~~-~i----------~y~~q~~~~l~~~~ 398 (635)
T PRK11147 333 QLVKDFSAQVQRG--DKIALIGPNGCGKTTLLKLMLGQLQADSGRIHC-GTKL-EV----------AYFDQHRAELDPEK 398 (635)
T ss_pred EEEcCcEEEEcCC--CEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEE-CCCc-EE----------EEEeCcccccCCCC
Confidence 4899999999999 999999999999999999999999999999987 4332 22 2233321 24567
Q ss_pred cchhhhHhhhccCCCC-HHHHHHHHHHHhhhc--CCCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCcc
Q psy11993 475 GGREMVQLFEKGYGKD-PAEIAFRAISHARDM--HIDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNE 551 (630)
Q Consensus 475 tv~env~l~~~~~~~d-~~~ia~~ai~~a~~~--~~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~D 551 (630)
|+.+++.+.......+ ....+...+..+... ..+..+-..|||++++..++++|. .+| .+|++|||+.++|
T Consensus 399 tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqRl~la~al~-----~~p-~lLlLDEPt~~LD 472 (635)
T PRK11147 399 TVMDNLAEGKQEVMVNGRPRHVLGYLQDFLFHPKRAMTPVKALSGGERNRLLLARLFL-----KPS-NLLILDEPTNDLD 472 (635)
T ss_pred CHHHHHHhhcccccccchHHHHHHHHHhcCCCHHHHhChhhhCCHHHHHHHHHHHHHh-----cCC-CEEEEcCCCCCCC
Confidence 8999987643211111 111222333322221 123346678999999999999998 777 5677999999999
Q ss_pred HHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 552 AVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 552 av~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
.... ..+.+.+.+| ..+.|++|+
T Consensus 473 ~~~~-~~l~~~l~~~-------~~tvi~vSH 495 (635)
T PRK11147 473 VETL-ELLEELLDSY-------QGTVLLVSH 495 (635)
T ss_pred HHHH-HHHHHHHHhC-------CCeEEEEEC
Confidence 8764 4556666654 236778887
No 358
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.36 E-value=2.3e-12 Score=132.87 Aligned_cols=168 Identities=17% Similarity=0.070 Sum_probs=102.8
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEE-----------EeecccCCccHHHHHHH-HH--
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVL-----------IAACDTFRAGAVEQLRT-HV-- 462 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVl-----------I~~~Dt~R~ga~eQLr~-~~-- 462 (630)
.+|+++++ +.+| ++++|+||||+||||+++.|++++.++.|+|. +.+.+..+. ...++. ..
T Consensus 15 ~~l~~i~~-i~~G--e~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~~~~~~~~~~~~~~g~~~~~~--~~~~~~~~~~i 89 (255)
T cd03236 15 FKLHRLPV-PREG--QVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNY--FTKLLEGDVKV 89 (255)
T ss_pred hhhhcCCC-CCCC--CEEEEECCCCCCHHHHHHHHhCCcCCCCceEeeccccchhhhhccCchhhhh--hHHhhhcccce
Confidence 47888984 7888 99999999999999999999999999999996 444444211 111111 11
Q ss_pred hhhcccCCCcCCcchhhhHhhhccCCCCHHHHHHHHHHHhhhcC-CCeeeeccccchhchHHHHHHHHhhhhhcCCCeEE
Q psy11993 463 RHLCSLHPAAKHGGREMVQLFEKGYGKDPAEIAFRAISHARDMH-IDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLL 541 (630)
Q Consensus 463 ~~l~~~~~~~~~tv~env~l~~~~~~~d~~~ia~~ai~~a~~~~-~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VL 541 (630)
.++.+.......++.+++.... ........+.++++.+.... .+......||+++++..++++|. .+| .++
T Consensus 90 ~~~~~~~~~~~~~~~~~i~~~l--~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~-----~~p-~il 161 (255)
T cd03236 90 IVKPQYVDLIPKAVKGKVGELL--KKKDERGKLDELVDQLELRHVLDRNIDQLSGGELQRVAIAAALA-----RDA-DFY 161 (255)
T ss_pred eeecchhccCchHHHHHHHHHh--chhHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHH-----hCC-CEE
Confidence 1111111111124444443321 11122223334444333221 23345678999999999999998 788 577
Q ss_pred EEeccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 542 FVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 542 lV~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
++|||+.++|...+. .+...+.++.. .+.+.|++|+
T Consensus 162 llDEPts~LD~~~~~-~l~~~l~~l~~----~~~tIIiiSH 197 (255)
T cd03236 162 FFDEPSSYLDIKQRL-NAARLIRELAE----DDNYVLVVEH 197 (255)
T ss_pred EEECCCCCCCHHHHH-HHHHHHHHHHh----cCCEEEEEEC
Confidence 799999999987643 33445554432 1456677776
No 359
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.35 E-value=2.8e-12 Score=160.38 Aligned_cols=166 Identities=16% Similarity=0.134 Sum_probs=127.8
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccCCCcCCcc
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHPAAKHGG 476 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~~~~~tv 476 (630)
.+|++++|.+++| +.++|||+||+||||++..|++++. .+|+|+|.+.|+.+.+ .+.+|....+++|.+.....|+
T Consensus 1233 ~vL~~is~~I~~G--ekvaIvGrSGsGKSTLl~lL~rl~~-~~G~I~IdG~di~~i~-~~~lR~~is~IpQdp~LF~GTI 1308 (1490)
T TIGR01271 1233 AVLQDLSFSVEGG--QRVGLLGRTGSGKSTLLSALLRLLS-TEGEIQIDGVSWNSVT-LQTWRKAFGVIPQKVFIFSGTF 1308 (1490)
T ss_pred ceeeccEEEEcCC--CEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEcccCC-HHHHHhceEEEeCCCccCccCH
Confidence 5899999999999 9999999999999999999999986 7899999999986655 4578888899998888788999
Q ss_pred hhhhHhhhccCCCCHHHHHHHHHHHhhh--------cCCCeeeec----cccchhchHHHHHHHHhhhhhcCCCeEEEEe
Q psy11993 477 REMVQLFEKGYGKDPAEIAFRAISHARD--------MHIDVVLID----TAGRMQDNEPLMRALAKLVKVNQPDLLLFVG 544 (630)
Q Consensus 477 ~env~l~~~~~~~d~~~ia~~ai~~a~~--------~~~D~vlID----TaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~ 544 (630)
++|+..+.. .+..+ ..++++.+.. .++|..+.+ .|||++|+..|+|+|. .+| .||++|
T Consensus 1309 R~NLdp~~~---~tdee-i~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALL-----r~~-~ILlLD 1378 (1490)
T TIGR01271 1309 RKNLDPYEQ---WSDEE-IWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSIL-----SKA-KILLLD 1378 (1490)
T ss_pred HHHhCcccC---CCHHH-HHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHHh-----CCC-CEEEEe
Confidence 999976531 12222 3344443321 356766654 5899999999999999 566 677799
Q ss_pred ccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 545 EALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 545 E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
||+++.|..... .+.+.+++.. .+.+.|++|+
T Consensus 1379 EaTS~lD~~Te~-~I~~~L~~~~-----~~~TvI~IaH 1410 (1490)
T TIGR01271 1379 EPSAHLDPVTLQ-IIRKTLKQSF-----SNCTVILSEH 1410 (1490)
T ss_pred CCcccCCHHHHH-HHHHHHHHHc-----CCCEEEEEec
Confidence 999999986543 3445555432 2467788886
No 360
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.35 E-value=1.5e-12 Score=148.23 Aligned_cols=158 Identities=21% Similarity=0.123 Sum_probs=106.6
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccCC-CcCCc
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHP-AAKHG 475 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~-~~~~t 475 (630)
.+|++++|.+.+| ++++|+|||||||||+++.|++.+.+..|.|.+... ....++.+.+. ++.+|
T Consensus 19 ~il~~is~~i~~G--e~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~~------------~~i~~v~Q~~~~~~~~t 84 (552)
T TIGR03719 19 EILKDISLSFFPG--AKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAPG------------IKVGYLPQEPQLDPTKT 84 (552)
T ss_pred eeecCceEEECCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC------------CEEEEEeccCCCCCCCc
Confidence 4899999999999 999999999999999999999999999999987421 11233333322 44578
Q ss_pred chhhhHhhhcc--------------CCC-CHH------------------------HHHHHHHHHhhhcCCCeeeecccc
Q psy11993 476 GREMVQLFEKG--------------YGK-DPA------------------------EIAFRAISHARDMHIDVVLIDTAG 516 (630)
Q Consensus 476 v~env~l~~~~--------------~~~-d~~------------------------~ia~~ai~~a~~~~~D~vlIDTaG 516 (630)
+.+|+.+.... ... ... ..+.+++..+.....+..+-+.||
T Consensus 85 v~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~LSg 164 (552)
T TIGR03719 85 VRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCPPWDADVTKLSG 164 (552)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCCCCcccCchhhcCH
Confidence 89888652110 000 000 001112222222123445667899
Q ss_pred chhchHHHHHHHHhhhhhcCCCeEEEEeccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 517 RMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 517 r~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
|++++..++++|. .+| .+|++|||++++|...+. .+.+.+.++. .+.|++|+
T Consensus 165 Gqkqrv~la~al~-----~~p-~lLLLDEPt~~LD~~~~~-~l~~~L~~~~-------~tvIiisH 216 (552)
T TIGR03719 165 GERRRVALCRLLL-----SKP-DMLLLDEPTNHLDAESVA-WLEQHLQEYP-------GTVVAVTH 216 (552)
T ss_pred HHHHHHHHHHHHh-----cCC-CEEEEcCCCCCCChHHHH-HHHHHHHhCC-------CeEEEEeC
Confidence 9999999999999 788 466699999999987754 3444555441 35677776
No 361
>KOG0059|consensus
Probab=99.31 E-value=4.8e-12 Score=151.10 Aligned_cols=171 Identities=18% Similarity=0.178 Sum_probs=126.2
Q ss_pred hhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccCC-CcCCcc
Q psy11993 398 ILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHP-AAKHGG 476 (630)
Q Consensus 398 iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~-~~~~tv 476 (630)
+++++++.+++| +++++.||||+||||++++|.|...+++|.+.+.+.|.-......+.+.+.++.+|... ++.+|+
T Consensus 580 Av~~ls~~V~~g--ecfgLLG~NGAGKtT~f~mltG~~~~t~G~a~i~g~~i~~~~~~~~~~~~iGyCPQ~d~l~~~lT~ 657 (885)
T KOG0059|consen 580 AVRGLSFAVPPG--ECFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDITVSTDFQQVRKQLGYCPQFDALWEELTG 657 (885)
T ss_pred hhcceEEEecCC--ceEEEecCCCCCchhhHHHHhCCccCCcceEEEecCccccccchhhhhhhcccCCchhhhhhhccH
Confidence 889999999999 99999999999999999999999999999999988887443333445666676666433 778999
Q ss_pred hhhhHhhhccCCCCHHHH---HHHHHHHhhhcCC-CeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCccH
Q psy11993 477 REMVQLFEKGYGKDPAEI---AFRAISHARDMHI-DVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEA 552 (630)
Q Consensus 477 ~env~l~~~~~~~d~~~i---a~~ai~~a~~~~~-D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~Da 552 (630)
+|++.++.+..|..+.++ +...++.+....+ +.-.--.|||+.++...+.+|. .+| .++++|||++|.|.
T Consensus 658 rEhL~~~arlrG~~~~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~kRkLs~aiali-----g~p-~vi~LDEPstGmDP 731 (885)
T KOG0059|consen 658 REHLEFYARLRGLPRSDIGSAIEKLLRLVGLGPYANKQVRTYSGGNKRRLSFAIALI-----GDP-SVILLDEPSTGLDP 731 (885)
T ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHHHcCChhhhccchhhCCCcchhhHHHHHHHh-----cCC-CEEEecCCCCCCCH
Confidence 999999998777544433 3444443333332 2223445999999999988888 788 56669999999999
Q ss_pred HHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 553 VDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 553 v~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
..+...++ .+.+..+. +- ++|+|.
T Consensus 732 ~arr~lW~-ii~~~~k~----g~-aiiLTS 755 (885)
T KOG0059|consen 732 KARRHLWD-IIARLRKN----GK-AIILTS 755 (885)
T ss_pred HHHHHHHH-HHHHHHhc----CC-EEEEEc
Confidence 77655443 44433321 12 677764
No 362
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.30 E-value=4.8e-12 Score=146.42 Aligned_cols=168 Identities=15% Similarity=0.065 Sum_probs=101.2
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHH-----HHHHHhhhcccC-C
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQ-----LRTHVRHLCSLH-P 470 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQ-----Lr~~~~~l~~~~-~ 470 (630)
.+|++++|.+.+| ++++|||||||||||++++|++.+.|+.|.|.+.+... .+-..| .+....++.+.. .
T Consensus 15 ~~l~~vs~~i~~G--e~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~~~--i~~~~q~~~~~~~~~~~~v~~~~~~ 90 (638)
T PRK10636 15 VLLDNATATINPG--QKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNWQ--LAWVNQETPALPQPALEYVIDGDRE 90 (638)
T ss_pred eeecCcEEEECCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCE--EEEEecCCCCCCCCHHHHHHHhhHH
Confidence 4789999999999 99999999999999999999999999999998765321 000000 000000000000 0
Q ss_pred CcCCcch-------h---hh-Hhhh---ccCCCCHHHHHHHHHHHhhhc--CCCeeeeccccchhchHHHHHHHHhhhhh
Q psy11993 471 AAKHGGR-------E---MV-QLFE---KGYGKDPAEIAFRAISHARDM--HIDVVLIDTAGRMQDNEPLMRALAKLVKV 534 (630)
Q Consensus 471 ~~~~tv~-------e---nv-~l~~---~~~~~d~~~ia~~ai~~a~~~--~~D~vlIDTaGr~~~~~~L~~aL~kl~~~ 534 (630)
+..++.. + .+ .+.. ...+.+....+..++..+... ..+..+-..|||++++..|+++|.
T Consensus 91 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSgGerqRv~LA~aL~----- 165 (638)
T PRK10636 91 YRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERPVSDFSGGWRMRLNLAQALI----- 165 (638)
T ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCchhhcCHHHHHHHHHHHHHc-----
Confidence 0000000 0 00 0000 000112222334444444332 234456778999999999999999
Q ss_pred cCCCeEEEEeccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 535 NQPDLLLFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 535 ~~Pd~VLlV~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
.+|+ +|++|||++++|...+. .+.+.+.++ ..+.|++|+
T Consensus 166 ~~P~-lLLLDEPtn~LD~~~~~-~L~~~L~~~-------~~tviivsH 204 (638)
T PRK10636 166 CRSD-LLLLDEPTNHLDLDAVI-WLEKWLKSY-------QGTLILISH 204 (638)
T ss_pred cCCC-EEEEcCCCCcCCHHHHH-HHHHHHHhC-------CCeEEEEeC
Confidence 8885 66699999999987653 445555544 246677776
No 363
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.30 E-value=3.4e-12 Score=119.46 Aligned_cols=171 Identities=16% Similarity=0.074 Sum_probs=114.8
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhc---CCeEEEeecccCCccHHHHHHHHHhhhcccCC-Cc
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIEN---NLNVLIAACDTFRAGAVEQLRTHVRHLCSLHP-AA 472 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~---ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~-~~ 472 (630)
-+|-++++++.+| +++.|.||+||||||+++-+++.+.+. .|++.+.+.+.....+. +++++++.+... ++
T Consensus 16 cLLa~~n~Tia~G--eivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~---qRq~GiLFQD~lLFp 90 (213)
T COG4136 16 CLLANVNFTIAKG--EIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAA---QRQIGILFQDALLFP 90 (213)
T ss_pred eEEEeeeEEecCC--cEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchh---hhheeeeeccccccc
Confidence 3567789999999 999999999999999999999999765 58999988776554443 456666666444 78
Q ss_pred CCcchhhhHhhhccC--CCCHHHHHHHHHHHhhhcCC-CeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccC
Q psy11993 473 KHGGREMVQLFEKGY--GKDPAEIAFRAISHARDMHI-DVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVG 549 (630)
Q Consensus 473 ~~tv~env~l~~~~~--~~d~~~ia~~ai~~a~~~~~-D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g 549 (630)
.+++.+|+.+..... +......+..|++.....++ +.-.-..||++..+..++|+|. ..| ..++++||.+.
T Consensus 91 hlsVg~Nl~fAlp~~~KG~aRr~~a~aAL~~~gL~g~f~~dP~tlSGGQrARvaL~R~Ll-----a~P-k~lLLDEPFS~ 164 (213)
T COG4136 91 HLSVGQNLLFALPATLKGNARRNAANAALERSGLDGAFHQDPATLSGGQRARVALLRALL-----AQP-KALLLDEPFSR 164 (213)
T ss_pred ccccccceEEecCcccccHHHHhhHHHHHHHhccchhhhcChhhcCcchHHHHHHHHHHH-----hCc-ceeeeCCchhH
Confidence 899999997653222 22122223444443333332 2223345999999999999998 888 45559999998
Q ss_pred ccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 550 NEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 550 ~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
+|..- ...|++-+ |++ .+..+|..+.+|+
T Consensus 165 LD~AL-R~qfR~wV--Fs~-~r~agiPtv~VTH 193 (213)
T COG4136 165 LDVAL-RDQFRQWV--FSE-VRAAGIPTVQVTH 193 (213)
T ss_pred HHHHH-HHHHHHHH--HHH-HHhcCCCeEEEec
Confidence 87531 13333332 111 0123566677776
No 364
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=99.29 E-value=3.3e-12 Score=148.28 Aligned_cols=157 Identities=11% Similarity=0.036 Sum_probs=108.6
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccCCCcCCcc
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHPAAKHGG 476 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~~~~~tv 476 (630)
.+|++++|.+++| ++++|+|||||||||+++.|++++.+.+|+|.+.. +....++.+.+.....|+
T Consensus 466 ~il~~isl~i~~G--e~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~------------~~~i~~v~Q~~~l~~~tv 531 (659)
T TIGR00954 466 VLIESLSFEVPSG--NHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPA------------KGKLFYVPQRPYMTLGTL 531 (659)
T ss_pred eeeecceEEECCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecC------------CCcEEEECCCCCCCCcCH
Confidence 5899999999999 99999999999999999999999988899987632 122344555444445599
Q ss_pred hhhhHhhhcc-----CCCCHHHHHHHHHHHhhhc-------CCCee---eeccccchhchHHHHHHHHhhhhhcCCCeEE
Q psy11993 477 REMVQLFEKG-----YGKDPAEIAFRAISHARDM-------HIDVV---LIDTAGRMQDNEPLMRALAKLVKVNQPDLLL 541 (630)
Q Consensus 477 ~env~l~~~~-----~~~d~~~ia~~ai~~a~~~-------~~D~v---lIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VL 541 (630)
++|+.+.... .+... +.+.++++.+... ++|.+ ....|||++++..++|+|. .+| .++
T Consensus 532 ~eni~~~~~~~~~~~~~~~~-~~i~~~l~~~~l~~~~~~~~g~~~~~~~~~~LSgGqkQRl~iARal~-----~~p-~il 604 (659)
T TIGR00954 532 RDQIIYPDSSEDMKRRGLSD-KDLEQILDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAMARLFY-----HKP-QFA 604 (659)
T ss_pred HHHHhcCCChhhhhccCCCH-HHHHHHHHHcCCHHHHhhcCCcccccccccCCCHHHHHHHHHHHHHH-----cCC-CEE
Confidence 9999764211 11111 1223344333221 12222 2357999999999999999 788 566
Q ss_pred EEeccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 542 FVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 542 lV~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
++|||+.++|..... .+.+.+.+ .+.+.|++|+
T Consensus 605 lLDEpts~LD~~~~~-~l~~~l~~-------~~~tvI~isH 637 (659)
T TIGR00954 605 ILDECTSAVSVDVEG-YMYRLCRE-------FGITLFSVSH 637 (659)
T ss_pred EEeCCccCCCHHHHH-HHHHHHHH-------cCCEEEEEeC
Confidence 699999999987643 34444542 2567788887
No 365
>KOG0061|consensus
Probab=99.29 E-value=8.7e-12 Score=143.26 Aligned_cols=161 Identities=19% Similarity=0.132 Sum_probs=121.6
Q ss_pred hhhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHh---cCCeEEEeecccCCccHHHHHHHHHhhhcccCC-C
Q psy11993 396 VDILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIE---NNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHP-A 471 (630)
Q Consensus 396 ~~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~---~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~-~ 471 (630)
..+|++|+....+| ++.+|.||+||||||++..||+.... ..|.|++.+.-.. ....+....++.|... .
T Consensus 43 k~iL~~vsg~~~~G--el~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~----~~~~~~~s~yV~QdD~l~ 116 (613)
T KOG0061|consen 43 KTILKGVSGTAKPG--ELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRD----SRSFRKISGYVQQDDVLL 116 (613)
T ss_pred ceeeeCcEEEEecC--eEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCc----hhhhhheeEEEccccccc
Confidence 46899999999999 99999999999999999999998864 5799999993321 2345666677776544 7
Q ss_pred cCCcchhhhHhhhccCCC---C---HHHHHHHHHHHhhhcCCCeeeec------cccchhchHHHHHHHHhhhhhcCCCe
Q psy11993 472 AKHGGREMVQLFEKGYGK---D---PAEIAFRAISHARDMHIDVVLID------TAGRMQDNEPLMRALAKLVKVNQPDL 539 (630)
Q Consensus 472 ~~~tv~env~l~~~~~~~---d---~~~ia~~ai~~a~~~~~D~vlID------TaGr~~~~~~L~~aL~kl~~~~~Pd~ 539 (630)
+.+||+|.+.+.....-+ + ..+...+.+..+....+..-+|. .+|++.+|..++.+|. ++| .
T Consensus 117 ~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvsia~Ell-----~~P-~ 190 (613)
T KOG0061|consen 117 PTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSIALELL-----TDP-S 190 (613)
T ss_pred ccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCccccchhhHHHHHHHHH-----cCC-C
Confidence 889999999988754433 2 23335555665555555443443 6899999999999999 889 7
Q ss_pred EEEEeccccCccHHHHHHHHHHHHhhcccC
Q psy11993 540 LLFVGEALVGNEAVDQLVKFNNAMADHSLS 569 (630)
Q Consensus 540 VLlV~E~~~g~Dav~ql~~f~~~l~~~~~~ 569 (630)
+|+.||||+|+|+..... .-+.+++++..
T Consensus 191 iLflDEPTSGLDS~sA~~-vv~~Lk~lA~~ 219 (613)
T KOG0061|consen 191 ILFLDEPTSGLDSFSALQ-VVQLLKRLARS 219 (613)
T ss_pred EEEecCCCCCcchhhHHH-HHHHHHHHHhC
Confidence 888999999999876543 34567777653
No 366
>PRK13409 putative ATPase RIL; Provisional
Probab=99.29 E-value=3e-12 Score=146.63 Aligned_cols=176 Identities=17% Similarity=0.102 Sum_probs=111.8
Q ss_pred HHHHHHHHcCCCcchhhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEE-----------EeecccC
Q psy11993 382 LTDALVQILSPKRRVDILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVL-----------IAACDTF 450 (630)
Q Consensus 382 l~~~L~~il~~~~~~~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVl-----------I~~~Dt~ 450 (630)
|.+.++.-|+++ ..+|++++ .+.+| ++++|+||||+||||+++.|++.+.|+.|+|. +.+.|..
T Consensus 75 ~~~~~~~~yg~~--~~~L~~l~-~i~~G--ev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l~ 149 (590)
T PRK13409 75 LEEEPVHRYGVN--GFKLYGLP-IPKEG--KVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQ 149 (590)
T ss_pred hccCceEEecCC--ceeEecCC-cCCCC--CEEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCChHHH
Confidence 444556566542 24688888 78888 99999999999999999999999999999997 4444432
Q ss_pred CccHHHHHHH---HHhh-hcccCCC---cCCcchhhhHhhhccCCCCHHHHHHHHHHHhhhcC-CCeeeeccccchhchH
Q psy11993 451 RAGAVEQLRT---HVRH-LCSLHPA---AKHGGREMVQLFEKGYGKDPAEIAFRAISHARDMH-IDVVLIDTAGRMQDNE 522 (630)
Q Consensus 451 R~ga~eQLr~---~~~~-l~~~~~~---~~~tv~env~l~~~~~~~d~~~ia~~ai~~a~~~~-~D~vlIDTaGr~~~~~ 522 (630)
.. ...++. ...+ .+..... ...|+.+++... +....+.++++.+.... .|..+-+.||+++++.
T Consensus 150 ~~--~~~~~~~~~~~~~~~q~~~~~p~~~~~tv~e~l~~~------~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv 221 (590)
T PRK13409 150 NY--FKKLYNGEIKVVHKPQYVDLIPKVFKGKVRELLKKV------DERGKLDEVVERLGLENILDRDISELSGGELQRV 221 (590)
T ss_pred HH--HHHHhccCcceeecccchhhhhhhhcchHHHHHHhh------hHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHH
Confidence 10 001110 0011 1111111 123666666432 22223344444443322 2555778899999999
Q ss_pred HHHHHHHhhhhhcCCCeEEEEeccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 523 PLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 523 ~L~~aL~kl~~~~~Pd~VLlV~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
.++++|. .+| .++++|||++++|..... .+.+.++++.. +.+.|++|+
T Consensus 222 ~ia~al~-----~~p-~lllLDEPts~LD~~~~~-~l~~~i~~l~~-----g~tvIivsH 269 (590)
T PRK13409 222 AIAAALL-----RDA-DFYFFDEPTSYLDIRQRL-NVARLIRELAE-----GKYVLVVEH 269 (590)
T ss_pred HHHHHHh-----cCC-CEEEEECCCCCCCHHHHH-HHHHHHHHHHC-----CCEEEEEeC
Confidence 9999999 788 466699999999987654 34445655532 456677776
No 367
>KOG0056|consensus
Probab=99.28 E-value=8.5e-12 Score=134.62 Aligned_cols=171 Identities=16% Similarity=0.140 Sum_probs=119.4
Q ss_pred hhhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccCCCcCCc
Q psy11993 396 VDILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHPAAKHG 475 (630)
Q Consensus 396 ~~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~~~~~t 475 (630)
..+|+||+|.+.+| +++++|||+|+||||+++.|-+++.-+.|.|.|.+.|+ |.-...-||.+.+.++++......|
T Consensus 551 k~vl~disF~v~pG--ktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdI-rnvt~~SLRs~IGVVPQDtvLFNdT 627 (790)
T KOG0056|consen 551 KPVLSDISFTVQPG--KTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDI-RNVTQSSLRSSIGVVPQDTVLFNDT 627 (790)
T ss_pred CceeecceEEecCC--cEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchH-HHHHHHHHHHhcCcccCcceeecce
Confidence 46899999999999 89999999999999999999999999999999999998 4434456788888888777677788
Q ss_pred chhhhHhhhccCCCCHHHHHHHHHHH-hhh----cCCCee----eeccccchhchHHHHHHHHhhhhhcCCCeEEEEecc
Q psy11993 476 GREMVQLFEKGYGKDPAEIAFRAISH-ARD----MHIDVV----LIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEA 546 (630)
Q Consensus 476 v~env~l~~~~~~~d~~~ia~~ai~~-a~~----~~~D~v----lIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~ 546 (630)
+..|+.+....-+.+....+.+|... -+. .+|... =.-.|||.+|+.+++|.+. ..| .++++||+
T Consensus 628 I~yNIryak~~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiARtiL-----K~P-~iIlLDEA 701 (790)
T KOG0056|consen 628 ILYNIRYAKPSASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIARTIL-----KAP-SIILLDEA 701 (790)
T ss_pred eeeheeecCCCCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHHHHHh-----cCC-cEEEEcch
Confidence 88888765432222221112122110 000 123222 2356999999999999998 567 57779999
Q ss_pred ccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEc
Q psy11993 547 LVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLT 581 (630)
Q Consensus 547 ~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlT 581 (630)
++++|.-.. +....++.+... +-++||+-
T Consensus 702 TSALDT~tE-R~IQaaL~rlca-----~RTtIVvA 730 (790)
T KOG0056|consen 702 TSALDTNTE-RAIQAALARLCA-----NRTTIVVA 730 (790)
T ss_pred hhhcCCccH-HHHHHHHHHHhc-----CCceEEEe
Confidence 999986543 333344544432 34455543
No 368
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.28 E-value=7.5e-12 Score=122.28 Aligned_cols=117 Identities=20% Similarity=0.140 Sum_probs=86.8
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccCCCcCCcc
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHPAAKHGG 476 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~~~~~tv 476 (630)
.++.++ +.+++| ++++|+||||+||||+++.|++++.+++|+|.+.+.++ .++.+
T Consensus 14 ~~l~~~-~~i~~G--e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i-------------~~~~q--------- 68 (177)
T cd03222 14 FLLVEL-GVVKEG--EVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITP-------------VYKPQ--------- 68 (177)
T ss_pred EEEccC-cEECCC--CEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEEE-------------EEEcc---------
Confidence 356664 678888 99999999999999999999999999999999876421 00100
Q ss_pred hhhhHhhhccCCCCHHHHHHHHHHHhhhcCCCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCccHHHHH
Q psy11993 477 REMVQLFEKGYGKDPAEIAFRAISHARDMHIDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQL 556 (630)
Q Consensus 477 ~env~l~~~~~~~d~~~ia~~ai~~a~~~~~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~Dav~ql 556 (630)
+. +.||+++++..++++|. .+| .++++|||+.++|...+.
T Consensus 69 -------------~~---------------------~LSgGq~qrv~laral~-----~~p-~lllLDEPts~LD~~~~~ 108 (177)
T cd03222 69 -------------YI---------------------DLSGGELQRVAIAAALL-----RNA-TFYLFDEPSAYLDIEQRL 108 (177)
T ss_pred -------------cC---------------------CCCHHHHHHHHHHHHHh-----cCC-CEEEEECCcccCCHHHHH
Confidence 00 08999999999999999 788 566699999999987653
Q ss_pred HHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 557 VKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 557 ~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
.+.+.+.++... .+.+.+++|+
T Consensus 109 -~l~~~l~~~~~~---~~~tiiivsH 130 (177)
T cd03222 109 -NAARAIRRLSEE---GKKTALVVEH 130 (177)
T ss_pred -HHHHHHHHHHHc---CCCEEEEEEC
Confidence 344455444321 1256778887
No 369
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.28 E-value=1.3e-11 Score=120.51 Aligned_cols=137 Identities=15% Similarity=0.089 Sum_probs=92.3
Q ss_pred chhhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccCCCcCC
Q psy11993 395 RVDILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHPAAKH 474 (630)
Q Consensus 395 ~~~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~~~~~ 474 (630)
...+|++++|.+.+| ++++|+|||||||||+++.|. +..|.|.+.+.... .. + ..+.
T Consensus 7 ~~~~l~~isl~i~~G--~~~~l~G~nG~GKSTLl~~il----~~~G~v~~~~~~~~----~~--~---~~~~-------- 63 (176)
T cd03238 7 NVHNLQNLDVSIPLN--VLVVVTGVSGSGKSTLVNEGL----YASGKARLISFLPK----FS--R---NKLI-------- 63 (176)
T ss_pred eeeeecceEEEEcCC--CEEEEECCCCCCHHHHHHHHh----hcCCcEEECCcccc----cc--c---ccEE--------
Confidence 456899999999999 999999999999999999874 35788877543210 00 0 0010
Q ss_pred cchhhhHhhhccCCCCHHHHHHHHHHHhhhcC--CCeeeeccccchhchHHHHHHHHhhhhhcC--CCeEEEEeccccCc
Q psy11993 475 GGREMVQLFEKGYGKDPAEIAFRAISHARDMH--IDVVLIDTAGRMQDNEPLMRALAKLVKVNQ--PDLLLFVGEALVGN 550 (630)
Q Consensus 475 tv~env~l~~~~~~~d~~~ia~~ai~~a~~~~--~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~--Pd~VLlV~E~~~g~ 550 (630)
+... .++++.+.... .+......||+++++..++++|. .+ | .++++|||+.++
T Consensus 64 -------~~~q----------~~~l~~~~L~~~~~~~~~~~LSgGq~qrl~laral~-----~~~~p-~llLlDEPt~~L 120 (176)
T cd03238 64 -------FIDQ----------LQFLIDVGLGYLTLGQKLSTLSGGELQRVKLASELF-----SEPPG-TLFILDEPSTGL 120 (176)
T ss_pred -------EEhH----------HHHHHHcCCCccccCCCcCcCCHHHHHHHHHHHHHh-----hCCCC-CEEEEeCCcccC
Confidence 0000 12333333221 34456778999999999999999 77 7 566699999999
Q ss_pred cHHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 551 EAVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 551 Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
|.... ..+.+.+.++.. .+.+.|++|+
T Consensus 121 D~~~~-~~l~~~l~~~~~----~g~tvIivSH 147 (176)
T cd03238 121 HQQDI-NQLLEVIKGLID----LGNTVILIEH 147 (176)
T ss_pred CHHHH-HHHHHHHHHHHh----CCCEEEEEeC
Confidence 97754 444555655532 2577888887
No 370
>PLN03140 ABC transporter G family member; Provisional
Probab=99.27 E-value=6.7e-12 Score=155.96 Aligned_cols=170 Identities=14% Similarity=0.101 Sum_probs=117.8
Q ss_pred hhhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHh--cCCeEEEeecccCCccHHHHHHHHHhhhccc-CCCc
Q psy11993 396 VDILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIE--NNLNVLIAACDTFRAGAVEQLRTHVRHLCSL-HPAA 472 (630)
Q Consensus 396 ~~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~--~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~-~~~~ 472 (630)
..+|++|++.+.+| ++++|+||||+||||+++.||+...+ ..|.|.+.+.+.-. ..++....++.+. ...+
T Consensus 893 ~~iL~~vs~~i~~G--el~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~~~----~~~~~~igyv~Q~d~~~~ 966 (1470)
T PLN03140 893 LQLLREVTGAFRPG--VLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQ----ETFARISGYCEQNDIHSP 966 (1470)
T ss_pred ceEeeCcEEEEECC--eEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccCCh----HHhhhheEEEccccccCC
Confidence 35899999999999 99999999999999999999998652 46899988876421 1233444555553 2366
Q ss_pred CCcchhhhHhhhccC---CCCHHH---HHHHHHHHhhhcCC-Ceee-----eccccchhchHHHHHHHHhhhhhcCCCeE
Q psy11993 473 KHGGREMVQLFEKGY---GKDPAE---IAFRAISHARDMHI-DVVL-----IDTAGRMQDNEPLMRALAKLVKVNQPDLL 540 (630)
Q Consensus 473 ~~tv~env~l~~~~~---~~d~~~---ia~~ai~~a~~~~~-D~vl-----IDTaGr~~~~~~L~~aL~kl~~~~~Pd~V 540 (630)
.+|+++++.+..... ..+..+ .+.+.++.+...++ |..+ -..||+++++..++++|. .+| .+
T Consensus 967 ~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgGerkRvsIa~aL~-----~~P-~l 1040 (1470)
T PLN03140 967 QVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELV-----ANP-SI 1040 (1470)
T ss_pred CCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHHHHHHHHHHHHHh-----hCC-CE
Confidence 799999998754322 112222 23344444443322 3333 257999999999999999 888 45
Q ss_pred EEEeccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 541 LFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 541 LlV~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
|++|||++|+|+.... .+.+.+++++.. +.+.|+.|+
T Consensus 1041 L~LDEPTsgLD~~~a~-~v~~~L~~l~~~----g~tVI~t~H 1077 (1470)
T PLN03140 1041 IFMDEPTSGLDARAAA-IVMRTVRNTVDT----GRTVVCTIH 1077 (1470)
T ss_pred EEEeCCCCCCCHHHHH-HHHHHHHHHHHC----CCEEEEEeC
Confidence 7899999999987654 445566665432 455666666
No 371
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.27 E-value=7e-12 Score=128.24 Aligned_cols=143 Identities=19% Similarity=0.148 Sum_probs=103.4
Q ss_pred hhhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccCCCcCCc
Q psy11993 396 VDILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHPAAKHG 475 (630)
Q Consensus 396 ~~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~~~~~t 475 (630)
..++++|+|.+.+| ++++|||.+||||||+.+.|.+++.|++|+|.+.+.|.......+..+.....+..
T Consensus 26 v~avd~Vsf~i~~g--e~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~-------- 95 (268)
T COG4608 26 VKAVDGVSFSIKEG--ETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLSKEERRERVLELLEK-------- 95 (268)
T ss_pred eEEecceeEEEcCC--CEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcchhHHHHHHHHHHHH--------
Confidence 57899999999999 99999999999999999999999999999999999986544322222222222211
Q ss_pred chhhhHhhhccCCCCHHHHHHHHHHHhhhcCCCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCccHHHH
Q psy11993 476 GREMVQLFEKGYGKDPAEIAFRAISHARDMHIDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQ 555 (630)
Q Consensus 476 v~env~l~~~~~~~d~~~ia~~ai~~a~~~~~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~Dav~q 555 (630)
| +..+ ..+.......||++.|+..++|+|+ .+|+ +++.|||++.+|.--|
T Consensus 96 ----V-------gl~~-------------~~~~ryPhelSGGQrQRi~IARALa-----l~P~-liV~DEpvSaLDvSiq 145 (268)
T COG4608 96 ----V-------GLPE-------------EFLYRYPHELSGGQRQRIGIARALA-----LNPK-LIVADEPVSALDVSVQ 145 (268)
T ss_pred ----h-------CCCH-------------HHhhcCCcccCchhhhhHHHHHHHh-----hCCc-EEEecCchhhcchhHH
Confidence 0 0110 0112335678999999999999999 9995 4559999999998666
Q ss_pred HHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 556 LVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 556 l~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
++..+ .+.++.. ..+++-+.+|+
T Consensus 146 aqIln-LL~dlq~---~~~lt~lFIsH 168 (268)
T COG4608 146 AQILN-LLKDLQE---ELGLTYLFISH 168 (268)
T ss_pred HHHHH-HHHHHHH---HhCCeEEEEEE
Confidence 55443 2233322 24788888887
No 372
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.26 E-value=1.1e-11 Score=154.12 Aligned_cols=173 Identities=16% Similarity=0.048 Sum_probs=116.6
Q ss_pred hhhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHH----HhcCCeEEEeecccCCccHHHHHHHHHhhhccc-CC
Q psy11993 396 VDILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWL----IENNLNVLIAACDTFRAGAVEQLRTHVRHLCSL-HP 470 (630)
Q Consensus 396 ~~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l----~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~-~~ 470 (630)
..+|+++++.+.+| ++++|+||||+||||+++.|++.+ .+..|+|.+.+.+.... ....+....++.+. ..
T Consensus 74 ~~iL~~vs~~i~~G--e~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~--~~~~r~~i~yv~Q~d~~ 149 (1394)
T TIGR00956 74 FDILKPMDGLIKPG--ELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEI--KKHYRGDVVYNAETDVH 149 (1394)
T ss_pred ceeeeCCEEEEECC--EEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHH--HhhcCceeEEecccccc
Confidence 45899999999999 999999999999999999999986 35789999988765211 11222223444443 23
Q ss_pred CcCCcchhhhHhhhccC-------CCCHHHHH----HHHHHHhhhcCC-Ceee-----eccccchhchHHHHHHHHhhhh
Q psy11993 471 AAKHGGREMVQLFEKGY-------GKDPAEIA----FRAISHARDMHI-DVVL-----IDTAGRMQDNEPLMRALAKLVK 533 (630)
Q Consensus 471 ~~~~tv~env~l~~~~~-------~~d~~~ia----~~ai~~a~~~~~-D~vl-----IDTaGr~~~~~~L~~aL~kl~~ 533 (630)
++.+|+++++.+..... +....+.. ..+++.+...++ |..+ -..|||++++..++++|.
T Consensus 150 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~---- 225 (1394)
T TIGR00956 150 FPHLTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASL---- 225 (1394)
T ss_pred CCCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHH----
Confidence 66799999998754321 11222221 223443333322 3222 347999999999999999
Q ss_pred hcCCCeEEEEeccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 534 VNQPDLLLFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 534 ~~~Pd~VLlV~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
.+| .++++|||++|+|+..... +.+.+++++.. .+.+.|+.++
T Consensus 226 -~~p-~vlllDEPTsgLD~~~~~~-i~~~L~~la~~---~g~tvii~~H 268 (1394)
T TIGR00956 226 -GGA-KIQCWDNATRGLDSATALE-FIRALKTSANI---LDTTPLVAIY 268 (1394)
T ss_pred -hCC-CEEEEeCCCCCcCHHHHHH-HHHHHHHHHHh---cCCEEEEEec
Confidence 788 5777999999999887643 44566665431 2445555554
No 373
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.25 E-value=1.1e-11 Score=118.05 Aligned_cols=126 Identities=25% Similarity=0.286 Sum_probs=92.8
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccCCCcCCcc
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHPAAKHGG 476 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~~~~~tv 476 (630)
.+|+++++.+.+| ++++|+|+||+||||++..|++.+.+..|+|.+.+.+...... .+.+.. +..
T Consensus 13 ~~l~~~~~~i~~g--~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~-~~~~~~---i~~--------- 77 (157)
T cd00267 13 TALDNVSLTLKAG--EIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPL-EELRRR---IGY--------- 77 (157)
T ss_pred eeEeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCH-HHHHhc---eEE---------
Confidence 4788999999999 9999999999999999999999999999999998876522111 111111 110
Q ss_pred hhhhHhhhccCCCCHHHHHHHHHHHhhhcCCCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCccHHHHH
Q psy11993 477 REMVQLFEKGYGKDPAEIAFRAISHARDMHIDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQL 556 (630)
Q Consensus 477 ~env~l~~~~~~~d~~~ia~~ai~~a~~~~~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~Dav~ql 556 (630)
+.+.|++++++..++++|. ..| .++++|||+.++|....
T Consensus 78 ----------------------------------~~qlS~G~~~r~~l~~~l~-----~~~-~i~ilDEp~~~lD~~~~- 116 (157)
T cd00267 78 ----------------------------------VPQLSGGQRQRVALARALL-----LNP-DLLLLDEPTSGLDPASR- 116 (157)
T ss_pred ----------------------------------EeeCCHHHHHHHHHHHHHh-----cCC-CEEEEeCCCcCCCHHHH-
Confidence 1118999999999999999 677 56669999999997664
Q ss_pred HHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 557 VKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 557 ~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
..+.+.+.++... +.+.+++|+
T Consensus 117 ~~l~~~l~~~~~~----~~tii~~sh 138 (157)
T cd00267 117 ERLLELLRELAEE----GRTVIIVTH 138 (157)
T ss_pred HHHHHHHHHHHHC----CCEEEEEeC
Confidence 4555566555431 345677765
No 374
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=99.25 E-value=9.2e-12 Score=117.39 Aligned_cols=112 Identities=22% Similarity=0.198 Sum_probs=87.5
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccCCCcCCcc
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHPAAKHGG 476 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~~~~~tv 476 (630)
.+|++++|.+.+| ++++|+||||+||||++..|++.+.+..|+|.+.+. ..+.
T Consensus 14 ~~l~~~~~~~~~G--e~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~---------------~~i~---------- 66 (144)
T cd03221 14 LLLKDISLTINPG--DRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGST---------------VKIG---------- 66 (144)
T ss_pred eEEEeeEEEECCC--CEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCe---------------EEEE----------
Confidence 4788999999999 999999999999999999999999999999988652 0111
Q ss_pred hhhhHhhhccCCCCHHHHHHHHHHHhhhcCCCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCccHHHHH
Q psy11993 477 REMVQLFEKGYGKDPAEIAFRAISHARDMHIDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQL 556 (630)
Q Consensus 477 ~env~l~~~~~~~d~~~ia~~ai~~a~~~~~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~Dav~ql 556 (630)
+.. ..|++++++..++++|. .+| .++++|||+.++|.....
T Consensus 67 -----~~~----------------------------~lS~G~~~rv~laral~-----~~p-~illlDEP~~~LD~~~~~ 107 (144)
T cd03221 67 -----YFE----------------------------QLSGGEKMRLALAKLLL-----ENP-NLLLLDEPTNHLDLESIE 107 (144)
T ss_pred -----EEc----------------------------cCCHHHHHHHHHHHHHh-----cCC-CEEEEeCCccCCCHHHHH
Confidence 100 08999999999999999 788 566699999999987654
Q ss_pred HHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 557 VKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 557 ~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
.+.+.++++ ..+.+++|+
T Consensus 108 -~l~~~l~~~-------~~til~~th 125 (144)
T cd03221 108 -ALEEALKEY-------PGTVILVSH 125 (144)
T ss_pred -HHHHHHHHc-------CCEEEEEEC
Confidence 444455433 245667775
No 375
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.25 E-value=9.3e-12 Score=144.01 Aligned_cols=158 Identities=15% Similarity=0.068 Sum_probs=103.0
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccCCCcCCcc
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHPAAKHGG 476 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~~~~~tv 476 (630)
.+|++++|.+.+| ++++|+|||||||||+++.|++.+.|..|+|.+... .+.+-+.|-. .. ...+..++
T Consensus 326 ~il~~isl~i~~G--e~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~--~~igy~~Q~~--~~-----~l~~~~~~ 394 (638)
T PRK10636 326 IILDSIKLNLVPG--SRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKG--IKLGYFAQHQ--LE-----FLRADESP 394 (638)
T ss_pred eeeccceEEECCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCC--EEEEEecCcc--hh-----hCCccchH
Confidence 4899999999999 999999999999999999999999999999987521 1222221200 00 00112333
Q ss_pred hhhhHhhhccCCCCHHHHHHHHHHHhhhc--CCCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCccHHH
Q psy11993 477 REMVQLFEKGYGKDPAEIAFRAISHARDM--HIDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVD 554 (630)
Q Consensus 477 ~env~l~~~~~~~d~~~ia~~ai~~a~~~--~~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~Dav~ 554 (630)
.+++..+ ........+...+..+... ..+..+-..|||++++..++++|. .+| .+|++|||+.++|...
T Consensus 395 ~~~~~~~---~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGekqRl~La~~l~-----~~p-~lLlLDEPt~~LD~~~ 465 (638)
T PRK10636 395 LQHLARL---APQELEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVW-----QRP-NLLLLDEPTNHLDLDM 465 (638)
T ss_pred HHHHHHh---CchhhHHHHHHHHHHcCCChhHhcCchhhCCHHHHHHHHHHHHHh-----cCC-CEEEEcCCCCCCCHHH
Confidence 3333211 1111122233444433321 123446778999999999999998 777 5677999999999876
Q ss_pred HHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 555 QLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 555 ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
. ..+.+.+.+|. .+.|++|+
T Consensus 466 ~-~~l~~~L~~~~-------gtvi~vSH 485 (638)
T PRK10636 466 R-QALTEALIDFE-------GALVVVSH 485 (638)
T ss_pred H-HHHHHHHHHcC-------CeEEEEeC
Confidence 5 44556666551 26677776
No 376
>PLN03073 ABC transporter F family; Provisional
Probab=99.24 E-value=1.2e-11 Score=144.42 Aligned_cols=175 Identities=14% Similarity=0.088 Sum_probs=110.8
Q ss_pred hhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccCCCcCCcch
Q psy11993 398 ILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHPAAKHGGR 477 (630)
Q Consensus 398 iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~~~~~tv~ 477 (630)
+|++++|.+.+| ++++|+|||||||||+++.|++.+.|..|.|.+... .+ ..++.+.+ ...+++.
T Consensus 524 il~~vsl~i~~G--e~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~~--~~----------igyv~Q~~-~~~l~~~ 588 (718)
T PLN03073 524 LFKNLNFGIDLD--SRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSAK--VR----------MAVFSQHH-VDGLDLS 588 (718)
T ss_pred eEeccEEEEcCC--CEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECCc--ee----------EEEEeccc-cccCCcc
Confidence 789999999999 999999999999999999999999999999986421 01 12222211 1223333
Q ss_pred hhhHhh-hccC-CCCHHHHHHHHHHHhhhcC--CCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCccHH
Q psy11993 478 EMVQLF-EKGY-GKDPAEIAFRAISHARDMH--IDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAV 553 (630)
Q Consensus 478 env~l~-~~~~-~~d~~~ia~~ai~~a~~~~--~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~Dav 553 (630)
.++.++ ...+ +.. ...+..++..+...+ .+..+-..|||++++..++++|. .+| .+|++|||+.++|..
T Consensus 589 ~~~~~~~~~~~~~~~-~~~i~~~L~~~gl~~~~~~~~~~~LSgGqkqRvaLAraL~-----~~p-~lLLLDEPT~~LD~~ 661 (718)
T PLN03073 589 SNPLLYMMRCFPGVP-EQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITF-----KKP-HILLLDEPSNHLDLD 661 (718)
T ss_pred hhHHHHHHHhcCCCC-HHHHHHHHHHCCCChHHhcCCccccCHHHHHHHHHHHHHh-----cCC-CEEEEcCCCCCCCHH
Confidence 332221 1111 222 223344444443321 23346678999999999999999 788 566699999999987
Q ss_pred HHHHHHHHHHhhcccCCCCCCeeEEEEcccCCcCccHHHHHHHHHHhCCcEEEEecCCC
Q psy11993 554 DQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGTGQT 612 (630)
Q Consensus 554 ~ql~~f~~~l~~~~~~~~~~~i~gIIlTK~D~~~~~~G~~ls~~~~~g~PI~fvg~Gq~ 612 (630)
... .+.+.+.++ ..+.|++|+ | .- .+....--|.++..|+-
T Consensus 662 s~~-~l~~~L~~~-------~gtvIivSH-d-----~~----~i~~~~drv~~l~~G~i 702 (718)
T PLN03073 662 AVE-ALIQGLVLF-------QGGVLMVSH-D-----EH----LISGSVDELWVVSEGKV 702 (718)
T ss_pred HHH-HHHHHHHHc-------CCEEEEEEC-C-----HH----HHHHhCCEEEEEECCEE
Confidence 643 344555543 126778887 2 11 12222235777777764
No 377
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.23 E-value=1.8e-11 Score=141.73 Aligned_cols=169 Identities=15% Similarity=0.086 Sum_probs=103.0
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecc--------cCCc--cHHHH-HHH----H
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACD--------TFRA--GAVEQ-LRT----H 461 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~D--------t~R~--ga~eQ-Lr~----~ 461 (630)
.+|++++|.+.+| ++++|+|||||||||++++|++.+.+..|.|.+.+.. ..+. +.+-+ +.. .
T Consensus 17 ~il~~is~~i~~G--e~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~~~~~~~l~q~~~~~~~~~v~~~~~~~~~~~ 94 (635)
T PRK11147 17 PLLDNAELHIEDN--ERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQDLIVARLQQDPPRNVEGTVYDFVAEGIEEQ 94 (635)
T ss_pred eeEeCcEEEECCC--CEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCCCCEEEEeccCCCCCCCCCHHHHHHHhhHHH
Confidence 4889999999999 9999999999999999999999999999999875421 0010 11111 000 0
Q ss_pred Hhh---hcc-cCCCcCCcchhhhHhhhc-------cCCCCHHHHHHHHHHHhhhcCCCeeeeccccchhchHHHHHHHHh
Q psy11993 462 VRH---LCS-LHPAAKHGGREMVQLFEK-------GYGKDPAEIAFRAISHARDMHIDVVLIDTAGRMQDNEPLMRALAK 530 (630)
Q Consensus 462 ~~~---l~~-~~~~~~~tv~env~l~~~-------~~~~d~~~ia~~ai~~a~~~~~D~vlIDTaGr~~~~~~L~~aL~k 530 (630)
... +.. .......+..+++..+.. ..+......+..++..+... .+..+-..|||++++..|+++|.
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~-~~~~~~~LSgGekqRv~LAraL~- 172 (635)
T PRK11147 95 AEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLGLD-PDAALSSLSGGWLRKAALGRALV- 172 (635)
T ss_pred HHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCCCC-CCCchhhcCHHHHHHHHHHHHHh-
Confidence 000 000 000000012223322211 01112222334444444332 25566788999999999999999
Q ss_pred hhhhcCCCeEEEEeccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 531 LVKVNQPDLLLFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 531 l~~~~~Pd~VLlV~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
.+| .+|++|||++++|.... ..+.+.+.++. .+.|++|+
T Consensus 173 ----~~P-~lLLLDEPt~~LD~~~~-~~L~~~L~~~~-------~tvlivsH 211 (635)
T PRK11147 173 ----SNP-DVLLLDEPTNHLDIETI-EWLEGFLKTFQ-------GSIIFISH 211 (635)
T ss_pred ----cCC-CEEEEcCCCCccCHHHH-HHHHHHHHhCC-------CEEEEEeC
Confidence 888 46669999999998765 34555565442 35677776
No 378
>PLN03140 ABC transporter G family member; Provisional
Probab=99.22 E-value=2.5e-11 Score=150.84 Aligned_cols=172 Identities=13% Similarity=0.043 Sum_probs=117.6
Q ss_pred chhhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhc---CCeEEEeecccCCccHHHHHHHHHhhhccc-CC
Q psy11993 395 RVDILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIEN---NLNVLIAACDTFRAGAVEQLRTHVRHLCSL-HP 470 (630)
Q Consensus 395 ~~~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~---ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~-~~ 470 (630)
...+|+++++.+++| ++++|+|||||||||+++.||+.+.+. .|+|.+.+.+.-... .+....++.+. ..
T Consensus 177 ~~~IL~~vs~~i~~G--e~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~----~~~~i~yv~Q~d~~ 250 (1470)
T PLN03140 177 KLTILKDASGIIKPS--RMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFV----PRKTSAYISQNDVH 250 (1470)
T ss_pred cceeccCCeEEEeCC--eEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhc----ccceeEEecccccC
Confidence 467999999999999 999999999999999999999999887 899999887652111 12334455543 23
Q ss_pred CcCCcchhhhHhhhccCCC----------CHHH---------------------------HHHHHHHHhhhcCC-Cee--
Q psy11993 471 AAKHGGREMVQLFEKGYGK----------DPAE---------------------------IAFRAISHARDMHI-DVV-- 510 (630)
Q Consensus 471 ~~~~tv~env~l~~~~~~~----------d~~~---------------------------ia~~ai~~a~~~~~-D~v-- 510 (630)
++.+|+++++.+.....+. ...+ ....+++.+...++ |..
T Consensus 251 ~~~lTV~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg 330 (1470)
T PLN03140 251 VGVMTVKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVG 330 (1470)
T ss_pred CCcCcHHHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeC
Confidence 6679999999886432210 0000 01223333333222 222
Q ss_pred ---eeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 511 ---LIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 511 ---lIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
+-..|||++++..++++|. .+| .+++.|||++|+|+..... +.+.+++++.. .+.+.|+.++
T Consensus 331 ~~~~rglSGGerkRVsia~aL~-----~~p-~vlllDEPTsGLDs~t~~~-i~~~Lr~la~~---~g~Tviis~H 395 (1470)
T PLN03140 331 DEMIRGISGGQKKRVTTGEMIV-----GPT-KTLFMDEISTGLDSSTTYQ-IVKCLQQIVHL---TEATVLMSLL 395 (1470)
T ss_pred CccccCCCcccceeeeehhhhc-----CCC-cEEEEeCCCcCccHHHHHH-HHHHHHHHHHh---cCCEEEEEec
Confidence 3357999999999999998 777 6778999999999887544 34556555421 2455666665
No 379
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.21 E-value=4.4e-11 Score=115.34 Aligned_cols=173 Identities=18% Similarity=0.124 Sum_probs=108.9
Q ss_pred chhhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccCCCcCC
Q psy11993 395 RVDILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHPAAKH 474 (630)
Q Consensus 395 ~~~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~~~~~ 474 (630)
.+++++.|+|.+..| ..++|+|.|||||||++++|++...|++|++++.+.... .+....-..+.+++.+++. ..+
T Consensus 25 ~~~AV~~vSFtL~~~--QTlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~L~-~~Dy~~R~k~IRMiFQDpn-ts~ 100 (267)
T COG4167 25 TVEAVKPVSFTLREG--QTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLH-FGDYSFRSKRIRMIFQDPN-TSL 100 (267)
T ss_pred hhhcccceEEEecCC--cEEEEEccCCCcHhHHHHHHhcccCCCCceEEECCcccc-ccchHhhhhheeeeecCCc-ccc
Confidence 356788899999999 899999999999999999999999999999999987652 2222122234444443221 122
Q ss_pred cchhhhHhh----h-ccCCCCHHHHHHHHHHHhhhcC--CC---eeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEe
Q psy11993 475 GGREMVQLF----E-KGYGKDPAEIAFRAISHARDMH--ID---VVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVG 544 (630)
Q Consensus 475 tv~env~l~----~-~~~~~d~~~ia~~ai~~a~~~~--~D---~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~ 544 (630)
+.+-++--+ . .....++.....++.+-++.-+ .| +.+--.|.++.++..++|+|. ..| .+++.|
T Consensus 101 NPRl~iGqiLd~PL~l~T~~~~~~R~~~i~~TL~~VGL~Pdhan~~~~~la~~QKQRVaLARALI-----L~P-~iIIaD 174 (267)
T COG4167 101 NPRLRIGQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHANYYPHMLAPGQKQRVALARALI-----LRP-KIIIAD 174 (267)
T ss_pred ChhhhhhhHhcchhhhcccCChHHHHHHHHHHHHHhccCccccccchhhcCchhHHHHHHHHHHh-----cCC-cEEEeh
Confidence 233233211 1 1223344433333333333222 12 223345888999999999999 899 667799
Q ss_pred ccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEc
Q psy11993 545 EALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLT 581 (630)
Q Consensus 545 E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlT 581 (630)
|++.++|+....+..|-.+. +. ...+|.-|.++
T Consensus 175 eAl~~LD~smrsQl~NL~Le-LQ---ek~GiSyiYV~ 207 (267)
T COG4167 175 EALASLDMSMRSQLINLMLE-LQ---EKQGISYIYVT 207 (267)
T ss_pred hhhhhccHHHHHHHHHHHHH-HH---HHhCceEEEEe
Confidence 99999997655444443221 11 12367777776
No 380
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=99.21 E-value=1.4e-11 Score=119.87 Aligned_cols=195 Identities=16% Similarity=0.087 Sum_probs=121.7
Q ss_pred chhhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEee-cccCCccHHHHHHH-HHhhhcccCCCc
Q psy11993 395 RVDILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAA-CDTFRAGAVEQLRT-HVRHLCSLHPAA 472 (630)
Q Consensus 395 ~~~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~-~Dt~R~ga~eQLr~-~~~~l~~~~~~~ 472 (630)
.+.+|++++|.+.+| +.-+|+||||+||||++-.|++-..|+.|+|++.+ .|+.+..-.+..|. .++.++.+..++
T Consensus 17 GF~Aln~ls~~v~~G--elr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~~~~e~~IAr~GIGRKFQ~PtVfe 94 (249)
T COG4674 17 GFKALNDLSFSVDPG--ELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIARAGIGRKFQKPTVFE 94 (249)
T ss_pred ceeeeeeeEEEecCC--eEEEEECCCCCCceeeeeeecccCCCCcceEEEcCchhhccCCHHHHHHhccCccccCCeehh
Confidence 366899999999999 99999999999999999999999999999999998 89877766544443 234444444588
Q ss_pred CCcchhhhHhhhccCC-----------CCHHHHHHHHHHHhhhcCC-CeeeeccccchhchHHHHHHHHhhhhhcCCCeE
Q psy11993 473 KHGGREMVQLFEKGYG-----------KDPAEIAFRAISHARDMHI-DVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLL 540 (630)
Q Consensus 473 ~~tv~env~l~~~~~~-----------~d~~~ia~~ai~~a~~~~~-D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~V 540 (630)
.+|+++|+.+...... .++.....+++........ +..---.|.++.|...+..-|+ ..| .+
T Consensus 95 ~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~A~~LSHGqKQwLEIGMll~-----Q~P-~l 168 (249)
T COG4674 95 NLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLAALLSHGQKQWLEIGMLLA-----QDP-KL 168 (249)
T ss_pred hccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhhhhhhccchhhhhhhheeec-----cCC-cE
Confidence 8999999988543221 1122223333333222211 2222234666666666644444 677 56
Q ss_pred EEEeccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcccCCcCccHHHHHHHHHHhCCcEEEEecCCCC
Q psy11993 541 LFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGTGQTY 613 (630)
Q Consensus 541 LlV~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK~D~~~~~~G~~ls~~~~~g~PI~fvg~Gq~v 613 (630)
|++|||.+|....+. ....+.+..++. .-..+|+-+ | .|.+-.++ .+|-.+--|+-.
T Consensus 169 LLlDEPvAGMTd~Et-~~taeLl~~la~-----~hsilVVEH-D-----M~Fvr~~A----~~VTVlh~G~VL 225 (249)
T COG4674 169 LLLDEPVAGMTDAET-EKTAELLKSLAG-----KHSILVVEH-D-----MGFVREIA----DKVTVLHEGSVL 225 (249)
T ss_pred EEecCccCCCcHHHH-HHHHHHHHHHhc-----CceEEEEec-c-----HHHHHHhh----heeEEEecccee
Confidence 679999999854432 222333433332 233445443 2 44444433 356655556543
No 381
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.20 E-value=2.6e-11 Score=151.83 Aligned_cols=158 Identities=15% Similarity=0.106 Sum_probs=108.7
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccCCCcCCcc
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHPAAKHGG 476 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~~~~~tv 476 (630)
.+|++++|.+++| ++++|+|||||||||+++.|++.+.+..|.|.+.+ + ..++.+.+.....|+
T Consensus 440 ~~l~~i~l~i~~G--~~~~I~G~~GsGKSTLl~~l~G~~~~~~G~i~~~g----~----------iayv~Q~~~l~~~Ti 503 (1490)
T TIGR01271 440 PVLKNISFKLEKG--QLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSG----R----------ISFSPQTSWIMPGTI 503 (1490)
T ss_pred cceeeeEEEECCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECC----E----------EEEEeCCCccCCccH
Confidence 4799999999999 99999999999999999999999999999998765 1 234444333344699
Q ss_pred hhhhHhhhccCCCCHHHHHHHH--H-HHhhh--cCCCe----eeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccc
Q psy11993 477 REMVQLFEKGYGKDPAEIAFRA--I-SHARD--MHIDV----VLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEAL 547 (630)
Q Consensus 477 ~env~l~~~~~~~d~~~ia~~a--i-~~a~~--~~~D~----vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~ 547 (630)
++|+.+... +.......+.++ + ..+.. .+.+. -....|||++++..++|+|. .+| .++++|||+
T Consensus 504 ~eNI~~g~~-~~~~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~-----~~~-~illLDep~ 576 (1490)
T TIGR01271 504 KDNIIFGLS-YDEYRYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVY-----KDA-DLYLLDSPF 576 (1490)
T ss_pred HHHHHhccc-cchHHHHHHHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHH-----cCC-CEEEEeCCc
Confidence 999986532 211111111111 1 11111 11111 13568999999999999999 788 466699999
Q ss_pred cCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 548 VGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 548 ~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
.++|.......|...+..+. .+.+.|++|+
T Consensus 577 saLD~~~~~~i~~~~l~~~~-----~~~tvilvtH 606 (1490)
T TIGR01271 577 THLDVVTEKEIFESCLCKLM-----SNKTRILVTS 606 (1490)
T ss_pred ccCCHHHHHHHHHHHHHHHh-----cCCeEEEEeC
Confidence 99999887666655444332 1456677775
No 382
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=99.20 E-value=4.8e-10 Score=119.56 Aligned_cols=152 Identities=24% Similarity=0.254 Sum_probs=96.3
Q ss_pred cCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCc---cHHHHHHHHHhhhcccCCCcCCcchhhhHhhh
Q psy11993 408 QGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRA---GAVEQLRTHVRHLCSLHPAAKHGGREMVQLFE 484 (630)
Q Consensus 408 ~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~---ga~eQLr~~~~~l~~~~~~~~~tv~env~l~~ 484 (630)
.|++.+|+|+|++||||||++..|+..+...+.+|.+++.|+... ++.-.-+.....+...+... + .....
T Consensus 53 ~~~~~~igi~G~~GaGKSTl~~~l~~~l~~~g~~v~vi~~Dp~s~~~~gallgd~~r~~~~~~~~~~~---~---r~~~~ 126 (332)
T PRK09435 53 TGNALRIGITGVPGVGKSTFIEALGMHLIEQGHKVAVLAVDPSSTRTGGSILGDKTRMERLSRHPNAF---I---RPSPS 126 (332)
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCCCccccchhhhchHhHHHhhcCCCCeE---E---EecCC
Confidence 356789999999999999999999999998899999999998432 22200011111111100000 0 01111
Q ss_pred ccCCCCHHHHHHHHHHHhhhcCCCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCccHHHHHHHHHHHHh
Q psy11993 485 KGYGKDPAEIAFRAISHARDMHIDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQLVKFNNAMA 564 (630)
Q Consensus 485 ~~~~~d~~~ia~~ai~~a~~~~~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~Dav~ql~~f~~~l~ 564 (630)
.++....+....+++..+...+||+++|||+|..+....+ .. ..|.+++|..|..|.+..... ...-
T Consensus 127 ~~~l~~~a~~~~~~~~~~~~~g~d~viieT~Gv~qs~~~i-~~--------~aD~vlvv~~p~~gd~iq~~k----~gi~ 193 (332)
T PRK09435 127 SGTLGGVARKTRETMLLCEAAGYDVILVETVGVGQSETAV-AG--------MVDFFLLLQLPGAGDELQGIK----KGIM 193 (332)
T ss_pred cccccchHHHHHHHHHHHhccCCCEEEEECCCCccchhHH-HH--------hCCEEEEEecCCchHHHHHHH----hhhh
Confidence 2233345566777888888889999999999998654442 22 247888888777776543221 1111
Q ss_pred hcccCCCCCCeeEEEEcccCCc
Q psy11993 565 DHSLSDNPHLIDGIVLTKFDTI 586 (630)
Q Consensus 565 ~~~~~~~~~~i~gIIlTK~D~~ 586 (630)
++ .+.+|+||.|..
T Consensus 194 E~--------aDIiVVNKaDl~ 207 (332)
T PRK09435 194 EL--------ADLIVINKADGD 207 (332)
T ss_pred hh--------hheEEeehhccc
Confidence 11 246999999975
No 383
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=99.20 E-value=3.6e-10 Score=119.27 Aligned_cols=162 Identities=20% Similarity=0.210 Sum_probs=97.5
Q ss_pred hhhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHH-HH--HHHHhhhcccCCCc
Q psy11993 396 VDILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVE-QL--RTHVRHLCSLHPAA 472 (630)
Q Consensus 396 ~~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~e-QL--r~~~~~l~~~~~~~ 472 (630)
..+|+++++....+ .+++|+|++|+||||++..|+..+...+.+|.++++|+....... .+ +.............
T Consensus 21 ~~~~~~~~~~~~~~--~~i~i~G~~G~GKttl~~~l~~~~~~~~~~v~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (300)
T TIGR00750 21 KQLLDRIMPYTGNA--HRVGITGTPGAGKSTLLEALGMELRRRGLKVAVIAVDPSSPFTGGSILGDRTRMQRLATDPGAF 98 (300)
T ss_pred HHHHHhCCcccCCc--eEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCCcchhhhcccchhhhhcccCCCce
Confidence 34666666655444 999999999999999999999999999999999999976542110 01 00000010000000
Q ss_pred CCcchhhhHhhhccCCCCHHHHHHHHHHHhhhcCCCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCccH
Q psy11993 473 KHGGREMVQLFEKGYGKDPAEIAFRAISHARDMHIDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEA 552 (630)
Q Consensus 473 ~~tv~env~l~~~~~~~d~~~ia~~ai~~a~~~~~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~Da 552 (630)
...+...++.........++++.+...+||+|+|||+|..+....++ ...|.++++..+..+.+.
T Consensus 99 ------~~~~~~~~~~~~~~~~~~~~~~~l~~~g~D~viidT~G~~~~e~~i~---------~~aD~i~vv~~~~~~~el 163 (300)
T TIGR00750 99 ------IRSMPTRGHLGGLSQATRELILLLDAAGYDVIIVETVGVGQSEVDIA---------NMADTFVVVTIPGTGDDL 163 (300)
T ss_pred ------eeecCccccccchhHHHHHHHHHHHhCCCCEEEEeCCCCchhhhHHH---------HhhceEEEEecCCccHHH
Confidence 00011111111223345566777777899999999999886654432 224667777666666443
Q ss_pred HHHHHHHHHHHhhcccCCCCCCeeEEEEcccCCc
Q psy11993 553 VDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTI 586 (630)
Q Consensus 553 v~ql~~f~~~l~~~~~~~~~~~i~gIIlTK~D~~ 586 (630)
. .+...+.+ ..+.+++||.|..
T Consensus 164 ~----~~~~~l~~--------~~~ivv~NK~Dl~ 185 (300)
T TIGR00750 164 Q----GIKAGLME--------IADIYVVNKADGE 185 (300)
T ss_pred H----HHHHHHhh--------hccEEEEEccccc
Confidence 2 22232311 2357999999975
No 384
>PLN03130 ABC transporter C family member; Provisional
Probab=99.19 E-value=2.8e-11 Score=152.20 Aligned_cols=155 Identities=17% Similarity=0.134 Sum_probs=113.8
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcC-CeEEEeecccCCccHHHHHHHHHhhhcccCCCcCCc
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENN-LNVLIAACDTFRAGAVEQLRTHVRHLCSLHPAAKHG 475 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~g-gkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~~~~~t 475 (630)
.+|+++++.+++| +.++||||+||||||++..|.+.+.+.. |+|.+ +....++.|.+.....|
T Consensus 631 ~vL~~inl~i~~G--e~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l--------------~~~Iayv~Q~p~LfngT 694 (1622)
T PLN03130 631 PTLSNINLDVPVG--SLVAIVGSTGEGKTSLISAMLGELPPRSDASVVI--------------RGTVAYVPQVSWIFNAT 694 (1622)
T ss_pred ceeeceeEEecCC--CEEEEECCCCCCHHHHHHHHHHhhccCCCceEEE--------------cCeEEEEcCccccCCCC
Confidence 4799999999999 9999999999999999999999999998 89874 22345666666667789
Q ss_pred chhhhHhhhccCCCCHHHHHHHHHHHhhh--------cCCCeeee----ccccchhchHHHHHHHHhhhhhcCCCeEEEE
Q psy11993 476 GREMVQLFEKGYGKDPAEIAFRAISHARD--------MHIDVVLI----DTAGRMQDNEPLMRALAKLVKVNQPDLLLFV 543 (630)
Q Consensus 476 v~env~l~~~~~~~d~~~ia~~ai~~a~~--------~~~D~vlI----DTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV 543 (630)
+++||.+... + ++.. ..++++.... .+.+..+. ..|||++++..|+|++. .+| .++++
T Consensus 695 IreNI~fg~~-~--d~e~-y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAly-----~~~-~IlLL 764 (1622)
T PLN03130 695 VRDNILFGSP-F--DPER-YERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVY-----SNS-DVYIF 764 (1622)
T ss_pred HHHHHhCCCc-c--cHHH-HHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHHHHHh-----CCC-CEEEE
Confidence 9999988643 2 2222 2223332211 23344443 36999999999999999 777 46669
Q ss_pred eccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 544 GEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 544 ~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
|||++++|+......|++.+..+. .+.+.|++|+
T Consensus 765 DEptSALD~~~~~~I~~~~l~~~l-----~~kTvIlVTH 798 (1622)
T PLN03130 765 DDPLSALDAHVGRQVFDKCIKDEL-----RGKTRVLVTN 798 (1622)
T ss_pred CCCccccCHHHHHHHHHHHhhHHh-----cCCEEEEEEC
Confidence 999999998766666666654332 2467788776
No 385
>PLN03232 ABC transporter C family member; Provisional
Probab=99.17 E-value=3.1e-11 Score=151.26 Aligned_cols=156 Identities=16% Similarity=0.151 Sum_probs=113.1
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccCCCcCCcc
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHPAAKHGG 476 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~~~~~tv 476 (630)
.+|++++|.+++| +.++||||+||||||++..|.+.+.+..|.+.. ++....++.|.+.....|+
T Consensus 631 ~vL~~inl~i~~G--e~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~~-------------~~~~Iayv~Q~p~Lf~gTI 695 (1495)
T PLN03232 631 PTLSDINLEIPVG--SLVAIVGGTGEGKTSLISAMLGELSHAETSSVV-------------IRGSVAYVPQVSWIFNATV 695 (1495)
T ss_pred ceeeeeEEEEcCC--CEEEEECCCCCcHHHHHHHHhCCCcccCCCEEE-------------ecCcEEEEcCccccccccH
Confidence 4799999999999 999999999999999999999999998776531 2334556667666677899
Q ss_pred hhhhHhhhccCCCCHHHHHHHHHHHhh--------hcCCCeeee----ccccchhchHHHHHHHHhhhhhcCCCeEEEEe
Q psy11993 477 REMVQLFEKGYGKDPAEIAFRAISHAR--------DMHIDVVLI----DTAGRMQDNEPLMRALAKLVKVNQPDLLLFVG 544 (630)
Q Consensus 477 ~env~l~~~~~~~d~~~ia~~ai~~a~--------~~~~D~vlI----DTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~ 544 (630)
++|+.+... + ++.. ..++++... -.+++..+. ..|||++++..|+|++. .+| .++++|
T Consensus 696 reNI~fg~~-~--~~e~-~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly-----~~~-~IlLLD 765 (1495)
T PLN03232 696 RENILFGSD-F--ESER-YWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVY-----SNS-DIYIFD 765 (1495)
T ss_pred HHHhhcCCc-c--CHHH-HHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHHh-----cCC-CEEEEc
Confidence 999987642 2 3322 222333221 123444443 36999999999999999 777 466699
Q ss_pred ccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 545 EALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 545 E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
||++++|.......|.+.+.... .+.+.|++|+
T Consensus 766 EptSaLD~~t~~~I~~~~l~~~l-----~~kT~IlvTH 798 (1495)
T PLN03232 766 DPLSALDAHVAHQVFDSCMKDEL-----KGKTRVLVTN 798 (1495)
T ss_pred CCccccCHHHHHHHHHHHhhhhh-----cCCEEEEEEC
Confidence 99999998876666666554322 2467788876
No 386
>PLN03073 ABC transporter F family; Provisional
Probab=99.14 E-value=1.2e-10 Score=136.20 Aligned_cols=170 Identities=18% Similarity=0.124 Sum_probs=97.9
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHH---HhcCCeEEEeecccCCc--cH--------HHH---HHH
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWL---IENNLNVLIAACDTFRA--GA--------VEQ---LRT 460 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l---~~~ggkVlI~~~Dt~R~--ga--------~eQ---Lr~ 460 (630)
.+|++++|.+.+| +.++|||+|||||||++++|++.. .|.+++|.+..-+.... .. .+. ++.
T Consensus 191 ~ll~~isl~i~~G--e~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~~~g~~~t~~~~v~~~~~~~~~~~~~ 268 (718)
T PLN03073 191 DLIVDASVTLAFG--RHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVGDDTTALQCVLNTDIERTQLLEE 268 (718)
T ss_pred EEEECCEEEECCC--CEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEeccCCCCCCCHHHHHHHhhHHHHHHHHH
Confidence 4899999999999 899999999999999999999753 46788998765432110 01 000 111
Q ss_pred HHhhhcccCCCcCCcchhhh---------------------HhhhccCCCCHHHHHHHHHHHhhhc--CCCeeeeccccc
Q psy11993 461 HVRHLCSLHPAAKHGGREMV---------------------QLFEKGYGKDPAEIAFRAISHARDM--HIDVVLIDTAGR 517 (630)
Q Consensus 461 ~~~~l~~~~~~~~~tv~env---------------------~l~~~~~~~d~~~ia~~ai~~a~~~--~~D~vlIDTaGr 517 (630)
...++.+.......+...+. ..+....+......+..++..+... ..+..+-+.|||
T Consensus 269 ~~~~~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~L~~lgl~~~~~~~~~~~LSgG 348 (718)
T PLN03073 269 EAQLVAQQRELEFETETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAASILAGLSFTPEMQVKATKTFSGG 348 (718)
T ss_pred HHHHHHHHHHhhhcccccccccccccccchHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHCCCChHHHhCchhhCCHH
Confidence 11111110000000000000 0000000111112222233222211 013345678999
Q ss_pred hhchHHHHHHHHhhhhhcCCCeEEEEeccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 518 MQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 518 ~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
++++..|+++|. .+|+ +|++|||+.++|.... ..+...+.++ +.+.||+|+
T Consensus 349 ~k~rv~LA~aL~-----~~p~-lLlLDEPt~~LD~~~~-~~l~~~L~~~-------~~tviivsH 399 (718)
T PLN03073 349 WRMRIALARALF-----IEPD-LLLLDEPTNHLDLHAV-LWLETYLLKW-------PKTFIVVSH 399 (718)
T ss_pred HHHHHHHHHHHh-----cCCC-EEEEECCCCCCCHHHH-HHHHHHHHHc-------CCEEEEEEC
Confidence 999999999999 8884 6669999999998764 3444555544 346777776
No 387
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.13 E-value=2.2e-10 Score=116.09 Aligned_cols=65 Identities=11% Similarity=0.060 Sum_probs=48.9
Q ss_pred CeeeeccccchhchHHHHHHHHhhhhhcCCC-eEEEEeccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 508 DVVLIDTAGRMQDNEPLMRALAKLVKVNQPD-LLLFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 508 D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd-~VLlV~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
+......||+++++..++++|. .+|+ .++++|||+.|+|.... ..+.+.+.++.. .+.+.|++|+
T Consensus 132 ~~~~~~LSgG~~qrv~laral~-----~~p~~~llllDEPt~gLD~~~~-~~l~~~l~~~~~----~g~tii~itH 197 (226)
T cd03270 132 SRSAPTLSGGEAQRIRLATQIG-----SGLTGVLYVLDEPSIGLHPRDN-DRLIETLKRLRD----LGNTVLVVEH 197 (226)
T ss_pred cCccCcCCHHHHHHHHHHHHHH-----hCCCCCEEEEeCCccCCCHHHH-HHHHHHHHHHHh----CCCEEEEEEe
Confidence 4456778999999999999999 7775 68889999999998764 344445554432 2567788887
No 388
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.12 E-value=1.5e-10 Score=130.33 Aligned_cols=158 Identities=22% Similarity=0.155 Sum_probs=96.4
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccCC-CcCCc
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHP-AAKHG 475 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~-~~~~t 475 (630)
.+|.++++.+.+| ..++|||+||+||||++++|++.+.+..|.|..... .|.+ ++.+.++ .+..|
T Consensus 17 ~l~~~~~l~~~~G--~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~--~~v~----------~l~Q~~~~~~~~t 82 (530)
T COG0488 17 PLLENVSLTLNPG--ERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKG--LRVG----------YLSQEPPLDPEKT 82 (530)
T ss_pred eeecCCcceeCCC--CEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCC--ceEE----------EeCCCCCcCCCcc
Confidence 4788999999999 899999999999999999999999998887765432 0111 1111111 00111
Q ss_pred chhhhHh---------------------------------hhccCCCCHHHHHHHHHHHhhhcCCCeeeeccccchhchH
Q psy11993 476 GREMVQL---------------------------------FEKGYGKDPAEIAFRAISHARDMHIDVVLIDTAGRMQDNE 522 (630)
Q Consensus 476 v~env~l---------------------------------~~~~~~~d~~~ia~~ai~~a~~~~~D~vlIDTaGr~~~~~ 522 (630)
+.+.|.. +....+.+....+..++.-+.....+..+-+.|||++.+.
T Consensus 83 v~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~~~~~~~LSGG~r~Rv 162 (530)
T COG0488 83 VLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDEDRPVSSLSGGWRRRV 162 (530)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcccCchhhcCHHHHHHH
Confidence 1111110 0000111111222223322222222445667899999999
Q ss_pred HHHHHHHhhhhhcCCCeEEEEeccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 523 PLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 523 ~L~~aL~kl~~~~~Pd~VLlV~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
.|+++|. .+|| +|++||||..+|.... .-+...+.+|. + +.||+|+
T Consensus 163 ~LA~aL~-----~~pD-lLLLDEPTNHLD~~~i-~WLe~~L~~~~------g-tviiVSH 208 (530)
T COG0488 163 ALARALL-----EEPD-LLLLDEPTNHLDLESI-EWLEDYLKRYP------G-TVIVVSH 208 (530)
T ss_pred HHHHHHh-----cCCC-EEEEcCCCcccCHHHH-HHHHHHHHhCC------C-cEEEEeC
Confidence 9999999 8886 5669999999986542 22333344332 4 7889998
No 389
>PTZ00243 ABC transporter; Provisional
Probab=99.12 E-value=6.9e-11 Score=148.39 Aligned_cols=155 Identities=15% Similarity=0.105 Sum_probs=107.1
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccCCCcCCcc
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHPAAKHGG 476 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~~~~~tv 476 (630)
.+|++++|.+++| ++++|+|||||||||++..|++.+.+..|.|.+. ....++.+.+.....|+
T Consensus 674 ~iL~~isl~i~~G--~~~~IiG~nGsGKSTLL~~i~G~~~~~~G~i~~~--------------~~i~yv~Q~~~l~~~Tv 737 (1560)
T PTZ00243 674 VLLRDVSVSVPRG--KLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAE--------------RSIAYVPQQAWIMNATV 737 (1560)
T ss_pred eeEeeeEEEECCC--CEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEEC--------------CeEEEEeCCCccCCCcH
Confidence 4799999999999 9999999999999999999999999999999752 12334444433446799
Q ss_pred hhhhHhhhccCCCCHHHHHHHHHHH------hhh--cCC----CeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEe
Q psy11993 477 REMVQLFEKGYGKDPAEIAFRAISH------ARD--MHI----DVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVG 544 (630)
Q Consensus 477 ~env~l~~~~~~~d~~~ia~~ai~~------a~~--~~~----D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~ 544 (630)
++|+.++.. .+... ..++++. +.. .++ +......|||++++..|+|+|. .+| .++++|
T Consensus 738 ~enI~~~~~---~~~~~-~~~~~~~~~l~~~l~~l~~g~~t~i~~~g~~LSGGQkqRvaLARAl~-----~~p-~illLD 807 (1560)
T PTZ00243 738 RGNILFFDE---EDAAR-LADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLARAVY-----ANR-DVYLLD 807 (1560)
T ss_pred HHHHHcCCh---hhHHH-HHHHHHHhhhHHHHHHhhccchHHhcCCCCCCCHHHHHHHHHHHHHh-----cCC-CEEEEc
Confidence 999987531 12111 1111111 111 022 2235678999999999999999 788 466699
Q ss_pred ccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 545 EALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 545 E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
||++++|.......+...+.... .+.+.|++|+
T Consensus 808 EP~saLD~~~~~~i~~~~~~~~~-----~~~TvIlvTH 840 (1560)
T PTZ00243 808 DPLSALDAHVGERVVEECFLGAL-----AGKTRVLATH 840 (1560)
T ss_pred CccccCCHHHHHHHHHHHHHHhh-----CCCEEEEEeC
Confidence 99999998765555554432111 2467778876
No 390
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.11 E-value=1e-10 Score=146.82 Aligned_cols=157 Identities=14% Similarity=0.066 Sum_probs=108.9
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccCCCcCCcc
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHPAAKHGG 476 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~~~~~tv 476 (630)
.+|++++|.+++| ++++|+|||||||||+++.|++.+.+..|+|.+.+ ...++.+.+.....|+
T Consensus 652 ~~l~~isl~i~~G--~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~g--------------~i~yv~Q~~~l~~~Ti 715 (1522)
T TIGR00957 652 PTLNGITFSIPEG--ALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKG--------------SVAYVPQQAWIQNDSL 715 (1522)
T ss_pred ceeeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCccCCcEEEECC--------------EEEEEcCCccccCCcH
Confidence 4799999999999 99999999999999999999999999999998764 1334455444456799
Q ss_pred hhhhHhhhccCCCCHHHHHHHHHHH------hhh--cCCCee----eeccccchhchHHHHHHHHhhhhhcCCCeEEEEe
Q psy11993 477 REMVQLFEKGYGKDPAEIAFRAISH------ARD--MHIDVV----LIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVG 544 (630)
Q Consensus 477 ~env~l~~~~~~~d~~~ia~~ai~~------a~~--~~~D~v----lIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~ 544 (630)
++|+.+... + ++... .++++. ... .+.+.. -...|||++++..|+|+|. .+| .++++|
T Consensus 716 ~eNI~~g~~-~--~~~~~-~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~-----~~~-~illLD 785 (1522)
T TIGR00957 716 RENILFGKA-L--NEKYY-QQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVY-----SNA-DIYLFD 785 (1522)
T ss_pred HHHhhcCCc-c--CHHHH-HHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHHh-----cCC-CEEEEc
Confidence 999987432 1 22211 112211 111 122222 3567999999999999999 777 466699
Q ss_pred ccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 545 EALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 545 E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
||++++|.......|+.... ... ...+.+.|++|+
T Consensus 786 Ep~saLD~~~~~~i~~~l~~-~~~--~~~~~tvIlvTH 820 (1522)
T TIGR00957 786 DPLSAVDAHVGKHIFEHVIG-PEG--VLKNKTRILVTH 820 (1522)
T ss_pred CCccccCHHHHHHHHHHHhh-hhh--hhcCCEEEEEeC
Confidence 99999998876665554432 100 012456777776
No 391
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.10 E-value=1.7e-10 Score=110.66 Aligned_cols=169 Identities=17% Similarity=0.142 Sum_probs=108.3
Q ss_pred hhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcc-cCCCcCCcchhhh
Q psy11993 402 ALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCS-LHPAAKHGGREMV 480 (630)
Q Consensus 402 i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~-~~~~~~~tv~env 480 (630)
++..+..| +++-+|||||+||||+++.+|+++ +-.|.|.+.+.+.....+. .|.+|..++.+ ..+++.+.+...+
T Consensus 18 lS~qv~aG--e~~HliGPNGaGKSTLLA~lAGm~-~~sGsi~~~G~~l~~~~~~-eLArhRAYLsQqq~p~f~mpV~~YL 93 (248)
T COG4138 18 LSGEVRAG--EILHLVGPNGAGKSTLLARMAGMT-SGSGSIQFAGQPLEAWSAT-ELARHRAYLSQQQTPPFAMPVWHYL 93 (248)
T ss_pred cccccccc--eEEEEECCCCccHHHHHHHHhCCC-CCCceEEECCcchhHHhHh-HHHHHHHHHhhccCCcchhhhhhhh
Confidence 44456678 999999999999999999999987 5578999999998555444 45556566654 3445555566555
Q ss_pred HhhhccCCCCHHHHHHHHHHHhhhcCCCee----eeccccchhchHHHHHHHHhhhhhcCCC-eEEEEeccccCccHHHH
Q psy11993 481 QLFEKGYGKDPAEIAFRAISHARDMHIDVV----LIDTAGRMQDNEPLMRALAKLVKVNQPD-LLLFVGEALVGNEAVDQ 555 (630)
Q Consensus 481 ~l~~~~~~~d~~~ia~~ai~~a~~~~~D~v----lIDTaGr~~~~~~L~~aL~kl~~~~~Pd-~VLlV~E~~~g~Dav~q 555 (630)
.++. ++ ..++..+-......+.|.. +-..+|+.-++..++.....+-...+|+ .+++.|||..++|...+
T Consensus 94 ~L~q----P~-~~~a~~i~~i~~~L~l~DKL~Rs~~qLSGGEWQRVRLAav~LQv~Pd~NP~~~LLllDEP~~~LDvAQ~ 168 (248)
T COG4138 94 TLHQ----PD-KTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQ 168 (248)
T ss_pred hhcC----ch-HHHHHHHHHHHhhhcccchhhhhhhhcCcccceeeEEeEEEEEecCCCCccceeEEecCCCcchhHHHH
Confidence 5543 22 2222222222233333332 4567999888888876665555556666 45779999999997655
Q ss_pred HHHHHHHHhhcccCCCCCCeeEEEEcccCC
Q psy11993 556 LVKFNNAMADHSLSDNPHLIDGIVLTKFDT 585 (630)
Q Consensus 556 l~~f~~~l~~~~~~~~~~~i~gIIlTK~D~ 585 (630)
..+...+..+..+ +++.|+-+ -|.
T Consensus 169 -~aLdrll~~~c~~----G~~vims~-HDL 192 (248)
T COG4138 169 -SALDRLLSALCQQ----GLAIVMSS-HDL 192 (248)
T ss_pred -HHHHHHHHHHHhC----CcEEEEec-cch
Confidence 3445555555543 45544444 354
No 392
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.09 E-value=3.7e-10 Score=120.22 Aligned_cols=199 Identities=19% Similarity=0.197 Sum_probs=135.3
Q ss_pred CCcchhhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhc-----CCeEEEeecccCCccHHHHHHH-HHhhh
Q psy11993 392 PKRRVDILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIEN-----NLNVLIAACDTFRAGAVEQLRT-HVRHL 465 (630)
Q Consensus 392 ~~~~~~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~-----ggkVlI~~~Dt~R~ga~eQLr~-~~~~l 465 (630)
+.....++++|+|.+..| ++++|||.+|||||-|+..|.++|..+ +|+|.+.+.|..+.... ++|. .+..+
T Consensus 19 ~~~~~~aVk~isf~i~~G--EtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se~-~lr~iRG~~I 95 (534)
T COG4172 19 EGGTVEAVKGISFDIEAG--ETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASER-QLRGVRGNKI 95 (534)
T ss_pred CCcceEeeccceeeecCC--CEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCHH-HHhhhcccce
Confidence 334567899999999999 999999999999999999999988642 57999999999777654 4443 44455
Q ss_pred cccCC------CcCCcchhhh-HhhhccCCCCHHHHHHHHHHHhhhcC-------CCeeeeccccchhchHHHHHHHHhh
Q psy11993 466 CSLHP------AAKHGGREMV-QLFEKGYGKDPAEIAFRAISHARDMH-------IDVVLIDTAGRMQDNEPLMRALAKL 531 (630)
Q Consensus 466 ~~~~~------~~~~tv~env-~l~~~~~~~d~~~ia~~ai~~a~~~~-------~D~vlIDTaGr~~~~~~L~~aL~kl 531 (630)
...++ .|-+|+..-+ +.+....+........++++.++.-+ ++...-..||++.++..++.+|+
T Consensus 96 ~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yPHeLSGGqRQRVMIAMALa-- 173 (534)
T COG4172 96 GMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYPHELSGGQRQRVMIAMALA-- 173 (534)
T ss_pred EEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhhhhCCcccCcchhhHHHHHHHHc--
Confidence 54443 2334433222 23333344444444555666554433 34456778999999999999999
Q ss_pred hhhcCCCeEEEEeccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcccCCcCccHHHHHHHHHHhCCcEEEEecCC
Q psy11993 532 VKVNQPDLLLFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGTGQ 611 (630)
Q Consensus 532 ~~~~~Pd~VLlV~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK~D~~~~~~G~~ls~~~~~g~PI~fvg~Gq 611 (630)
+.|+ +|+.|||++.+|..-|++.++ .++++.. ..++..+.+|+ | .|.+--++. .|.-...|+
T Consensus 174 ---n~P~-lLIADEPTTALDVtvQaQIL~-Ll~~Lq~---~~gMa~lfITH----D--L~iVr~~AD----rV~VM~~G~ 235 (534)
T COG4172 174 ---NEPD-LLIADEPTTALDVTVQAQILD-LLKELQA---ELGMAILFITH----D--LGIVRKFAD----RVYVMQHGE 235 (534)
T ss_pred ---CCCC-eEeecCCcchhhhhhHHHHHH-HHHHHHH---HhCcEEEEEec----c--HHHHHHhhh----hEEEEeccE
Confidence 9995 555999999999887766543 3444432 24677888887 2 444444444 466566665
Q ss_pred CC
Q psy11993 612 TY 613 (630)
Q Consensus 612 ~v 613 (630)
-+
T Consensus 236 iv 237 (534)
T COG4172 236 IV 237 (534)
T ss_pred Ee
Confidence 54
No 393
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.07 E-value=7.1e-10 Score=118.10 Aligned_cols=194 Identities=14% Similarity=0.159 Sum_probs=131.1
Q ss_pred hhhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccCC-----
Q psy11993 396 VDILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHP----- 470 (630)
Q Consensus 396 ~~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~----- 470 (630)
+.++++|++.+.+| +.++|||.+||||||+-..|.+++... |.|.+.+.|+.... ..+++-+.+.+...++
T Consensus 300 ~~AVd~isl~L~~g--qTlGlVGESGSGKsTlG~allrL~~s~-G~I~F~G~~i~~~~-~~~mrplR~~mQvVFQDPygS 375 (534)
T COG4172 300 LRAVDGISLTLRRG--QTLGLVGESGSGKSTLGLALLRLIPSQ-GEIRFDGQDIDGLS-RKEMRPLRRRMQVVFQDPYGS 375 (534)
T ss_pred eEEeccceeEecCC--CeEEEEecCCCCcchHHHHHHhhcCcC-ceEEECCccccccC-hhhhhhhhhhceEEEeCCCCC
Confidence 56788999999999 999999999999999999999998776 99999998875433 2344444444443333
Q ss_pred -CcCCcchhhhHhhhccC--CCCHHHHHHHHHHHhhhcCCC-----eeeeccccchhchHHHHHHHHhhhhhcCCCeEEE
Q psy11993 471 -AAKHGGREMVQLFEKGY--GKDPAEIAFRAISHARDMHID-----VVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLF 542 (630)
Q Consensus 471 -~~~~tv~env~l~~~~~--~~d~~~ia~~ai~~a~~~~~D-----~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLl 542 (630)
.|.+|+.+-|.-....+ ..+.++...++++.+..-++| ...-..||++.++..++|+|. .+| .+++
T Consensus 376 LsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPhEFSGGQRQRIAIARAli-----LkP-~~i~ 449 (534)
T COG4172 376 LSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYPHEFSGGQRQRIAIARALI-----LKP-ELIL 449 (534)
T ss_pred CCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCCcccCcchhhHHHHHHHHh-----cCC-cEEE
Confidence 44566655443222222 234555555555555555554 336678999999999999999 899 4555
Q ss_pred EeccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcccCCcCccHHHHHHHHHHhCCcEEEEecCCCC
Q psy11993 543 VGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGTGQTY 613 (630)
Q Consensus 543 V~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK~D~~~~~~G~~ls~~~~~g~PI~fvg~Gq~v 613 (630)
+|||++.+|.--|++.. ..++++.. ..++.-+.+++ | ...+-++++ -|.-.-.|+-|
T Consensus 450 LDEPTSALD~SVQaQvv-~LLr~LQ~---k~~LsYLFISH-D-----L~VvrAl~~----~viVm~~GkiV 506 (534)
T COG4172 450 LDEPTSALDRSVQAQVL-DLLRDLQQ---KHGLSYLFISH-D-----LAVVRALCH----RVIVMRDGKIV 506 (534)
T ss_pred ecCCchHhhHHHHHHHH-HHHHHHHH---HhCCeEEEEec-c-----HHHHHHhhc----eEEEEeCCEEe
Confidence 99999999976555433 23333322 34788888887 2 333444444 36666677655
No 394
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.07 E-value=5.2e-10 Score=106.93 Aligned_cols=156 Identities=17% Similarity=0.211 Sum_probs=99.0
Q ss_pred cchhhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeec----ccCCccHHHHHHHHHhhhcccC
Q psy11993 394 RRVDILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAAC----DTFRAGAVEQLRTHVRHLCSLH 469 (630)
Q Consensus 394 ~~~~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~----Dt~R~ga~eQLr~~~~~l~~~~ 469 (630)
....+|++++|+++.| +++++=||+|+||||++++|-+-+.+++|+|++--. |.-.+.+.+-+......++...
T Consensus 22 i~LpV~~~vslsV~aG--ECvvL~G~SG~GKStllr~LYaNY~~d~G~I~v~H~g~~vdl~~a~pr~vl~vRr~TiGyVS 99 (235)
T COG4778 22 VRLPVLRNVSLSVNAG--ECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAEPREVLEVRRTTIGYVS 99 (235)
T ss_pred EEeeeeeceeEEecCc--cEEEeeCCCCCcHHHHHHHHHhccCCCCceEEEEeCcchhhhhccChHHHHHHHHhhhHHHH
Confidence 3567899999999999 999999999999999999999999999999998743 3334444444433222222211
Q ss_pred C----CcCCcchhhh--HhhhccCCCCH-HHHHHHHHHHhhhcC--CCeeeeccccchhchHHHHHHHHhhhhhcCCCeE
Q psy11993 470 P----AAKHGGREMV--QLFEKGYGKDP-AEIAFRAISHARDMH--IDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLL 540 (630)
Q Consensus 470 ~----~~~~tv~env--~l~~~~~~~d~-~~ia~~ai~~a~~~~--~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~V 540 (630)
+ .|..+..+.+ ++.+.+...+. ...+.+.+..+.... +.+-.-..||+.||+.+++|.+. .. ..|
T Consensus 100 QFLRviPRV~aLdVvaePll~~gv~~~~a~~~a~~Ll~rLnlperLW~LaPaTFSGGEqQRVNIaRgfi-----vd-~pI 173 (235)
T COG4778 100 QFLRVIPRVSALDVVAEPLLARGVPREVARAKAADLLTRLNLPERLWSLAPATFSGGEQQRVNIARGFI-----VD-YPI 173 (235)
T ss_pred HHHHhccCcchHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCCHHHhcCCCcccCCchheehhhhhhhh-----cc-Cce
Confidence 1 2222222222 22333222221 122333333222111 23445566999999999999987 43 258
Q ss_pred EEEeccccCccHHHHHH
Q psy11993 541 LFVGEALVGNEAVDQLV 557 (630)
Q Consensus 541 LlV~E~~~g~Dav~ql~ 557 (630)
|++|||++.+|+.+...
T Consensus 174 LLLDEPTasLDa~Nr~v 190 (235)
T COG4778 174 LLLDEPTASLDATNRAV 190 (235)
T ss_pred EEecCCcccccccchHH
Confidence 88999999999876543
No 395
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=99.06 E-value=8.6e-10 Score=118.09 Aligned_cols=160 Identities=19% Similarity=0.154 Sum_probs=114.3
Q ss_pred chhhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccCCCcCC
Q psy11993 395 RVDILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHPAAKH 474 (630)
Q Consensus 395 ~~~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~~~~~ 474 (630)
.-.+|.+++|.++.| +.+++||++|+||||++..|-+++..+.|+|.+.+-|+ |.-...-||.-.+.+++++..+..
T Consensus 275 ~r~iL~~isf~i~~g--~tvAiVg~SG~gKsTI~rllfRFyD~~sG~I~id~qdi-r~vtq~slR~aIg~VPQDtvLFND 351 (497)
T COG5265 275 RRPILNGISFTIPLG--KTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDI-RDVTQQSLRRAIGIVPQDTVLFND 351 (497)
T ss_pred cchhhcCccccccCc--cEEEEEeCCCCcHHHHHHHHHHHhCCcCceEEEcchhH-HHhHHHHHHHHhCcCcccceehhh
Confidence 346899999999999 99999999999999999999999999999999999998 444455678888888887776666
Q ss_pred cchhhhHhhhccCCCCHHHHHHHHHHHhhh--------cCCCeee----eccccchhchHHHHHHHHhhhhhcCCCeEEE
Q psy11993 475 GGREMVQLFEKGYGKDPAEIAFRAISHARD--------MHIDVVL----IDTAGRMQDNEPLMRALAKLVKVNQPDLLLF 542 (630)
Q Consensus 475 tv~env~l~~~~~~~d~~~ia~~ai~~a~~--------~~~D~vl----IDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLl 542 (630)
|..-|+.+.... ....++ ..+.+.+.. .+||..+ .-.+|+.+|+..++|.+. .+| .+++
T Consensus 352 ti~yni~ygr~~--at~eev-~aaa~~aqi~~fi~~lP~gy~t~VgerglklSggekqrvaiar~il-----k~p-~il~ 422 (497)
T COG5265 352 TIAYNIKYGRPD--ATAEEV-GAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIARTIL-----KNP-PILI 422 (497)
T ss_pred hHHHHHhccCcc--ccHHHH-HHHHHHhhhhHHHHhCchhhhcccchheeeccCchHHHHHHHHHHh-----cCC-CEEE
Confidence 666666543211 112222 112221211 2344332 235899999999999998 667 6888
Q ss_pred EeccccCccHHHHHHHHHHHHhhcc
Q psy11993 543 VGEALVGNEAVDQLVKFNNAMADHS 567 (630)
Q Consensus 543 V~E~~~g~Dav~ql~~f~~~l~~~~ 567 (630)
.||+++.+|.... +.....+++.+
T Consensus 423 ~deatsaldt~te-~~iq~~l~~~~ 446 (497)
T COG5265 423 LDEATSALDTHTE-QAIQAALREVS 446 (497)
T ss_pred EehhhhHhhhhHH-HHHHHHHHHHh
Confidence 9999999987543 33344555544
No 396
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=99.06 E-value=1.8e-09 Score=111.67 Aligned_cols=148 Identities=24% Similarity=0.267 Sum_probs=98.6
Q ss_pred cCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCc---cHHHHHHHHHhhhcccCCCcCCcchhhhHhhh
Q psy11993 408 QGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRA---GAVEQLRTHVRHLCSLHPAAKHGGREMVQLFE 484 (630)
Q Consensus 408 ~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~---ga~eQLr~~~~~l~~~~~~~~~tv~env~l~~ 484 (630)
.|++.+|+|.|++|+||||++-.|...|...|.+|.|++.|+-.+ |+. ++...-...++..+|+.+-.
T Consensus 48 tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsi---------LGDRiRM~~~~~~~~vFiRs 118 (323)
T COG1703 48 TGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSI---------LGDRIRMQRLAVDPGVFIRS 118 (323)
T ss_pred CCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccc---------cccHhhHHhhccCCCeEEee
Confidence 577899999999999999999999999999999999999998432 332 11111111122233343322
Q ss_pred ---ccCCCCHHHHHHHHHHHhhhcCCCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCccHHHHHHHHHH
Q psy11993 485 ---KGYGKDPAEIAFRAISHARDMHIDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQLVKFNN 561 (630)
Q Consensus 485 ---~~~~~d~~~ia~~ai~~a~~~~~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~Dav~ql~~f~~ 561 (630)
+++-..-.....+++..+...+||+|+|.|.|.-|.+..+.. ++ |.+++|.-|-.|-+ ++ .+..
T Consensus 119 ~~srG~lGGlS~at~~~i~~ldAaG~DvIIVETVGvGQsev~I~~-~a--------Dt~~~v~~pg~GD~-~Q---~iK~ 185 (323)
T COG1703 119 SPSRGTLGGLSRATREAIKLLDAAGYDVIIVETVGVGQSEVDIAN-MA--------DTFLVVMIPGAGDD-LQ---GIKA 185 (323)
T ss_pred cCCCccchhhhHHHHHHHHHHHhcCCCEEEEEecCCCcchhHHhh-hc--------ceEEEEecCCCCcH-HH---HHHh
Confidence 222222333456677777888999999999999887766643 33 67788888888844 22 2222
Q ss_pred HHhhcccCCCCCCeeEEEEcccCC
Q psy11993 562 AMADHSLSDNPHLIDGIVLTKFDT 585 (630)
Q Consensus 562 ~l~~~~~~~~~~~i~gIIlTK~D~ 585 (630)
-+-++ -|.+++||+|.
T Consensus 186 GimEi--------aDi~vINKaD~ 201 (323)
T COG1703 186 GIMEI--------ADIIVINKADR 201 (323)
T ss_pred hhhhh--------hheeeEeccCh
Confidence 23222 35789999995
No 397
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=99.05 E-value=1.3e-09 Score=103.56 Aligned_cols=145 Identities=20% Similarity=0.217 Sum_probs=82.1
Q ss_pred EEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccCCCcCCcchhhhHh--hhc-cCCC
Q psy11993 413 VMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHPAAKHGGREMVQL--FEK-GYGK 489 (630)
Q Consensus 413 vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~~~~~tv~env~l--~~~-~~~~ 489 (630)
+++++|++|+||||++.+|+.++.+.+++|.++++|..+.....++ +.+..... .....+++.+ ... ....
T Consensus 1 ~i~~~G~~GsGKTt~~~~l~~~~~~~g~~v~ii~~D~~~~~~~~~~--~~~~~~~~----~~~~~~~~~~~~~~~~~~~~ 74 (148)
T cd03114 1 VIGITGVPGAGKSTLIDALITALRARGKRVAVLAIDPSSPFSGGAI--LGDRIRME----RHASDPGVFIRSLATRGFLG 74 (148)
T ss_pred CEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCCCCcccch--hcCceEhh----heecCCCceEEEcCCcCccc
Confidence 3789999999999999999999999999999999997443211000 11100000 0000011111 111 1111
Q ss_pred CHHHHHHHHHHHhhhcCCCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCccHHHHHHHHHHHHhhcccC
Q psy11993 490 DPAEIAFRAISHARDMHIDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQLVKFNNAMADHSLS 569 (630)
Q Consensus 490 d~~~ia~~ai~~a~~~~~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~Dav~ql~~f~~~l~~~~~~ 569 (630)
.......++++.++..+||+++|||+|..+.... .+ ...|.+++|..|..+ |+....+ . ..+
T Consensus 75 ~~~~~~~~~~~~~~~~~~D~iiIDtaG~~~~~~~---~~------~~Ad~~ivv~tpe~~-D~y~~~k-~-~~~------ 136 (148)
T cd03114 75 GLSRATPEVIRVLDAAGFDVIIVETVGVGQSEVD---IA------SMADTTVVVMAPGAG-DDIQAIK-A-GIM------ 136 (148)
T ss_pred ccchhHHHHHHHHHhcCCCEEEEECCccChhhhh---HH------HhCCEEEEEECCCch-hHHHHhh-h-hHh------
Confidence 2223344555666666899999999887654322 22 233677778877633 3332211 1 111
Q ss_pred CCCCCeeEEEEcccC
Q psy11993 570 DNPHLIDGIVLTKFD 584 (630)
Q Consensus 570 ~~~~~i~gIIlTK~D 584 (630)
+.-+.+++||.|
T Consensus 137 ---~~~~~~~~~k~~ 148 (148)
T cd03114 137 ---EIADIVVVNKAD 148 (148)
T ss_pred ---hhcCEEEEeCCC
Confidence 235679999987
No 398
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.00 E-value=2.2e-09 Score=111.07 Aligned_cols=171 Identities=14% Similarity=0.122 Sum_probs=101.8
Q ss_pred hhhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHH-HHH---------h----------cCCeEEEeeccc----CC
Q psy11993 396 VDILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICF-WLI---------E----------NNLNVLIAACDT----FR 451 (630)
Q Consensus 396 ~~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~-~l~---------~----------~ggkVlI~~~Dt----~R 451 (630)
...|+++++.++.| .+++|+|++||||||++..+.+ .+. + .-.+|..++-.+ -|
T Consensus 8 ~~nl~~v~~~ip~g--~~~~vtGvSGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vdq~pi~~~~r 85 (261)
T cd03271 8 ENNLKNIDVDIPLG--VLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVIVIDQSPIGRTPR 85 (261)
T ss_pred hhcCCCceeeccCC--cEEEEECCCCCchHHHHHHHHHHHHHHHhcccccCCCcccccccccccCceEEecCCcCCCCCC
Confidence 45688899999999 8999999999999999987632 111 1 112344444332 12
Q ss_pred ccH------HHHHHHH------Hhhh----------ccc-CCCcCCcchhhhHhhhccCCCCHHHHHHHHHHHhhhcC--
Q psy11993 452 AGA------VEQLRTH------VRHL----------CSL-HPAAKHGGREMVQLFEKGYGKDPAEIAFRAISHARDMH-- 506 (630)
Q Consensus 452 ~ga------~eQLr~~------~~~l----------~~~-~~~~~~tv~env~l~~~~~~~d~~~ia~~ai~~a~~~~-- 506 (630)
+.. .+.+|.+ +.++ +.. .....+|+.+++.++...+. ...+.++++.+....
T Consensus 86 s~~~ty~~~~~~ir~~fC~~C~G~r~~~~~l~~~~~g~~i~~v~~ltv~e~~~~~~~~~~---~~~~~~~L~~vgL~~l~ 162 (261)
T cd03271 86 SNPATYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADVLDMTVEEALEFFENIPK---IARKLQTLCDVGLGYIK 162 (261)
T ss_pred CcHHHHHHHHHHHHHhcCccccccccCHHHHhcCcCCCCHHHHhcCCHHHHHHHHHhhhh---HHHHHHHHHHcCCchhh
Confidence 221 1112211 0000 100 01346888888888764321 112233333333221
Q ss_pred CCeeeeccccchhchHHHHHHHHhhhhhcC---CCeEEEEeccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 507 IDVVLIDTAGRMQDNEPLMRALAKLVKVNQ---PDLLLFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 507 ~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~---Pd~VLlV~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
.+..+...||+++++..++++|. .+ | .++++|||++|+|..... .+.+.+.++.. .+.+.|++|+
T Consensus 163 l~~~~~~LSgGe~QRl~LAraL~-----~~~~~p-~lllLDEPtsgLD~~~~~-~l~~~L~~l~~----~g~tvIiitH 230 (261)
T cd03271 163 LGQPATTLSGGEAQRIKLAKELS-----KRSTGK-TLYILDEPTTGLHFHDVK-KLLEVLQRLVD----KGNTVVVIEH 230 (261)
T ss_pred hcCccccCCHHHHHHHHHHHHHh-----cCCCCC-cEEEEECCCCCCCHHHHH-HHHHHHHHHHh----CCCEEEEEeC
Confidence 23346678999999999999998 43 4 577799999999987754 34445555542 2567788887
No 399
>KOG0054|consensus
Probab=98.95 E-value=2e-09 Score=130.74 Aligned_cols=145 Identities=18% Similarity=0.154 Sum_probs=114.3
Q ss_pred hhhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccCCCcCCc
Q psy11993 396 VDILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHPAAKHG 475 (630)
Q Consensus 396 ~~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~~~~~t 475 (630)
..+|++|+|.+.+| +.|+|||.+|+||||++..|=++..+.+|+|.|.++|+...|- .+||....+++|++..+..|
T Consensus 1153 p~VLk~is~~I~p~--eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~IDgvdI~~igL-~dLRsrlsIIPQdPvLFsGT 1229 (1381)
T KOG0054|consen 1153 PLVLKGISFTIKPG--EKVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGVDISKIGL-HDLRSRLSIIPQDPVLFSGT 1229 (1381)
T ss_pred cchhcCceEEEcCC--ceEEEeCCCCCCHHHHHHHHHHhcCccCCeEEEcCeecccccH-HHHHhcCeeeCCCCceecCc
Confidence 46899999999999 9999999999999999999999999999999999999988875 48899999999988888999
Q ss_pred chhhhHhhhccCCCCHHHHHHHHHHHhhh--------cCCCeeeecc----ccchhchHHHHHHHHhhhhhcCCCeEEEE
Q psy11993 476 GREMVQLFEKGYGKDPAEIAFRAISHARD--------MHIDVVLIDT----AGRMQDNEPLMRALAKLVKVNQPDLLLFV 543 (630)
Q Consensus 476 v~env~l~~~~~~~d~~~ia~~ai~~a~~--------~~~D~vlIDT----aGr~~~~~~L~~aL~kl~~~~~Pd~VLlV 543 (630)
+|.|++-+.... ..+ ..+|++.... .++|..+.+- |-|++|-..|+|||. .+ ..||++
T Consensus 1230 vR~NLDPf~e~s---D~~-IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLARALL-----r~-skILvL 1299 (1381)
T KOG0054|consen 1230 VRFNLDPFDEYS---DDE-IWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARALL-----RK-SKILVL 1299 (1381)
T ss_pred cccccCcccccC---HHH-HHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHHHHHHHHHHh-----cc-CCEEEE
Confidence 999998765422 122 2233333211 2456655542 556677788888887 34 478889
Q ss_pred eccccCccHH
Q psy11993 544 GEALVGNEAV 553 (630)
Q Consensus 544 ~E~~~g~Dav 553 (630)
||||+.-|..
T Consensus 1300 DEATAsVD~~ 1309 (1381)
T KOG0054|consen 1300 DEATASVDPE 1309 (1381)
T ss_pred ecccccCChH
Confidence 9999998864
No 400
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=98.95 E-value=9.3e-10 Score=109.28 Aligned_cols=150 Identities=17% Similarity=0.125 Sum_probs=86.7
Q ss_pred hhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCC---------eEEEeecccCCccHHHHHHHHHhhhcccCCCc
Q psy11993 402 ALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNL---------NVLIAACDTFRAGAVEQLRTHVRHLCSLHPAA 472 (630)
Q Consensus 402 i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~gg---------kVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~~~ 472 (630)
+++.+.+| +++|+||||+||||++..|++++.+..+ .+.+.+.+.... ..+ ..++..++.+
T Consensus 16 ~~l~~~~g---~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~---~~v~~vfq~~ 85 (197)
T cd03278 16 TTIPFPPG---LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKP----ANF---AEVTLTFDNS 85 (197)
T ss_pred eeeecCCC---cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCC----Cce---EEEEEEEEcC
Confidence 45555554 8999999999999999999988754422 344434433210 011 1222222211
Q ss_pred CCcchhhhHhhhccCCCCHHHHHHHHHHHhhhcCCCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCccH
Q psy11993 473 KHGGREMVQLFEKGYGKDPAEIAFRAISHARDMHIDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEA 552 (630)
Q Consensus 473 ~~tv~env~l~~~~~~~d~~~ia~~ai~~a~~~~~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~Da 552 (630)
.. . +. ..+.+.+.++++. ....+..+-+.||+++++..++++|+.. ...|..++++|||+.++|.
T Consensus 86 ~~------~-~~----~~~~~~~~~~l~~--~~~~~~~~~~LS~G~kqrl~la~~l~~~--~~~~~~illlDEP~~~LD~ 150 (197)
T cd03278 86 DG------R-YS----IISQGDVSEIIEA--PGKKVQRLSLLSGGEKALTALALLFAIF--RVRPSPFCVLDEVDAALDD 150 (197)
T ss_pred CC------c-ee----EEehhhHHHHHhC--CCccccchhhcCHHHHHHHHHHHHHHHh--ccCCCCEEEEeCCcccCCH
Confidence 10 0 11 1011223344443 1123455678899999999999888621 1244467789999999998
Q ss_pred HHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 553 VDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 553 v~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
..+. .+.+.+.++.. ..+.|++|+
T Consensus 151 ~~~~-~l~~~l~~~~~-----~~tiIiitH 174 (197)
T cd03278 151 ANVE-RFARLLKEFSK-----ETQFIVITH 174 (197)
T ss_pred HHHH-HHHHHHHHhcc-----CCEEEEEEC
Confidence 7653 44455655532 356778887
No 401
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=98.93 E-value=1.7e-09 Score=121.92 Aligned_cols=157 Identities=19% Similarity=0.138 Sum_probs=101.5
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccCCCcCCcc
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHPAAKHGG 476 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~~~~~tv 476 (630)
.++++++|.+.+| ..|+||||||+||||+++.|++.+.+..|.|.+... -+.+-..|-+. .+. +..|+
T Consensus 336 ~l~~~~s~~i~~g--~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~--v~igyf~Q~~~---~l~-----~~~t~ 403 (530)
T COG0488 336 LLLKDLSFRIDRG--DRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGET--VKIGYFDQHRD---ELD-----PDKTV 403 (530)
T ss_pred eeecCceEEecCC--CEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCc--eEEEEEEehhh---hcC-----ccCcH
Confidence 4788999999999 999999999999999999999999888888776443 24443333211 110 11233
Q ss_pred hhhhHhhhccCCCCHHHHHHHHHHHhhhcC--CCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCccHHH
Q psy11993 477 REMVQLFEKGYGKDPAEIAFRAISHARDMH--IDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVD 554 (630)
Q Consensus 477 ~env~l~~~~~~~d~~~ia~~ai~~a~~~~--~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~Dav~ 554 (630)
.+.+.- .+.......++..+..+...+ ....+-.+|||++.+..++..+. .+| -+|++||||.-+|...
T Consensus 404 ~d~l~~---~~~~~~e~~~r~~L~~f~F~~~~~~~~v~~LSGGEk~Rl~La~ll~-----~~p-NvLiLDEPTNhLDi~s 474 (530)
T COG0488 404 LEELSE---GFPDGDEQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLL-----QPP-NLLLLDEPTNHLDIES 474 (530)
T ss_pred HHHHHh---hCccccHHHHHHHHHHcCCChHHHhCchhhcCHhHHHHHHHHHHhc-----cCC-CEEEEcCCCccCCHHH
Confidence 333322 121111222333333322221 12235578999999988888776 566 5677999999998654
Q ss_pred HHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 555 QLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 555 ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
...+.+++.+|.. +.|++|+
T Consensus 475 -~~aLe~aL~~f~G-------tvl~VSH 494 (530)
T COG0488 475 -LEALEEALLDFEG-------TVLLVSH 494 (530)
T ss_pred -HHHHHHHHHhCCC-------eEEEEeC
Confidence 4667778887753 4677777
No 402
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=98.91 E-value=2e-09 Score=109.79 Aligned_cols=151 Identities=21% Similarity=0.180 Sum_probs=86.0
Q ss_pred cCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccCCCcCCcchhhhHhhhccC
Q psy11993 408 QGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHPAAKHGGREMVQLFEKGY 487 (630)
Q Consensus 408 ~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~~~~~tv~env~l~~~~~ 487 (630)
.|+..+|+|.||+|+||||++..|+..+...+.+|.|++.|+-.+-. -+.+++...-...++..+++.+-....
T Consensus 26 ~g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~t------GGAlLGDRiRM~~~~~d~~vfIRS~at 99 (266)
T PF03308_consen 26 TGRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFT------GGALLGDRIRMQELSRDPGVFIRSMAT 99 (266)
T ss_dssp TT-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---------SS--GGGCHHHHTSTTEEEEEE--
T ss_pred cCCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCC------CCcccccHHHhcCcCCCCCEEEeecCc
Confidence 35568999999999999999999999999999999999999843210 111122111111111222332222111
Q ss_pred CCC---HHHHHHHHHHHhhhcCCCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCccHHHHHHHHHHHHh
Q psy11993 488 GKD---PAEIAFRAISHARDMHIDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQLVKFNNAMA 564 (630)
Q Consensus 488 ~~d---~~~ia~~ai~~a~~~~~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~Dav~ql~~f~~~l~ 564 (630)
... -.....+++..++..+||+|+|.|.|.-|....++. + .|.+++|.-|..|-+.- .+..-+-
T Consensus 100 RG~lGGls~~t~~~v~ll~aaG~D~IiiETVGvGQsE~~I~~-~--------aD~~v~v~~Pg~GD~iQ----~~KaGim 166 (266)
T PF03308_consen 100 RGSLGGLSRATRDAVRLLDAAGFDVIIIETVGVGQSEVDIAD-M--------ADTVVLVLVPGLGDEIQ----AIKAGIM 166 (266)
T ss_dssp -SSHHHHHHHHHHHHHHHHHTT-SEEEEEEESSSTHHHHHHT-T--------SSEEEEEEESSTCCCCC----TB-TTHH
T ss_pred CCCCCCccHhHHHHHHHHHHcCCCEEEEeCCCCCccHHHHHH-h--------cCeEEEEecCCCccHHH----HHhhhhh
Confidence 111 223356677778888999999999998877655532 2 37788899998885521 1111111
Q ss_pred hcccCCCCCCeeEEEEcccCC
Q psy11993 565 DHSLSDNPHLIDGIVLTKFDT 585 (630)
Q Consensus 565 ~~~~~~~~~~i~gIIlTK~D~ 585 (630)
++ -|.+|+||.|.
T Consensus 167 Ei--------aDi~vVNKaD~ 179 (266)
T PF03308_consen 167 EI--------ADIFVVNKADR 179 (266)
T ss_dssp HH---------SEEEEE--SH
T ss_pred hh--------ccEEEEeCCCh
Confidence 11 46799999993
No 403
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=98.88 E-value=1.3e-09 Score=111.99 Aligned_cols=167 Identities=18% Similarity=0.136 Sum_probs=91.9
Q ss_pred CeEEEEEccCCCChHHHHHHHHHHHHhc-CCeEEEeec-ccCCccHHHHHH-HHHhhhcccC----------CCcCCcch
Q psy11993 411 PFVMAFCGVNGVGKSTNLAKICFWLIEN-NLNVLIAAC-DTFRAGAVEQLR-THVRHLCSLH----------PAAKHGGR 477 (630)
Q Consensus 411 p~vi~lvGpNGvGKTTllakLA~~l~~~-ggkVlI~~~-Dt~R~ga~eQLr-~~~~~l~~~~----------~~~~~tv~ 477 (630)
|.+.+|||||||||||++..|++.+.+. ++.+..-+. |..+.+.....+ .....+.+.. ..+.+++.
T Consensus 25 ~~~~~IvG~NGsGKStll~Ai~~ll~~~~~~~~r~~~~~~li~~~~~~~~~~~~v~~~fq~~~~~~~~~~~~~~~~ltV~ 104 (251)
T cd03273 25 PQFNAITGLNGSGKSNILDAICFVLGITNLSTVRASNLQDLIYKRGQAGITKASVTIVFDNSDKSQSPIGFENYPEITVT 104 (251)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhcccccccccccCHHHHhhcCCCCCCcEEEEEEEEEcCCcccCcccccCCceEEEE
Confidence 3599999999999999999999998765 445554433 221110000000 0111111110 12245666
Q ss_pred hhhHhhhc-cC---CCC-HHHHHHHHHHHhhhc--CC-------------------CeeeeccccchhchHHHHHHHHhh
Q psy11993 478 EMVQLFEK-GY---GKD-PAEIAFRAISHARDM--HI-------------------DVVLIDTAGRMQDNEPLMRALAKL 531 (630)
Q Consensus 478 env~l~~~-~~---~~d-~~~ia~~ai~~a~~~--~~-------------------D~vlIDTaGr~~~~~~L~~aL~kl 531 (630)
.++..... .+ +.. ....+.++++.+... ++ +..+.+.+++++++..++++|+.+
T Consensus 105 r~I~~~~~~~~~in~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~~~~~~~~~~lS~G~~qr~~la~al~~~ 184 (251)
T cd03273 105 RQIVLGGTNKYLINGHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNMGGVWKESLTELSGGQRSLVALSLILALL 184 (251)
T ss_pred EEEEcCCceEEEECCEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHhHHhhcccccccCHHHHHHHHHHHHHHHh
Confidence 55533211 11 111 122233344333221 01 133567899999999999988622
Q ss_pred hhhcCCCeEEEEeccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcccCC
Q psy11993 532 VKVNQPDLLLFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDT 585 (630)
Q Consensus 532 ~~~~~Pd~VLlV~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK~D~ 585 (630)
. ..|..++++|||+.++|..... .+.+.+.++.. +.+.|++|+-++
T Consensus 185 ~--~~~~~illlDEPt~~ld~~~~~-~~~~~l~~~~~-----g~~ii~iSH~~~ 230 (251)
T cd03273 185 L--FKPAPMYILDEVDAALDLSHTQ-NIGRMIKTHFK-----GSQFIVVSLKEG 230 (251)
T ss_pred h--ccCCCEEEEeCCCcCCCHHHHH-HHHHHHHHHcC-----CCEEEEEECCHH
Confidence 1 1333677799999999987654 44445555432 467788888543
No 404
>KOG0065|consensus
Probab=98.80 E-value=1.2e-09 Score=130.21 Aligned_cols=197 Identities=16% Similarity=0.129 Sum_probs=121.5
Q ss_pred hhhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHh--cCCeEEEeecccCCccHHHHHHHHHhhhcc-cCCCc
Q psy11993 396 VDILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIE--NNLNVLIAACDTFRAGAVEQLRTHVRHLCS-LHPAA 472 (630)
Q Consensus 396 ~~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~--~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~-~~~~~ 472 (630)
..+|++|+=.+.+| ...+|+|++|+|||||+..||+.... -.|.|+|.|...- .+-.++..+++.| +...+
T Consensus 804 ~qLL~~V~G~~kPG--~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~----q~tF~R~~GYvqQ~DiH~~ 877 (1391)
T KOG0065|consen 804 RQLLNNVSGAFKPG--VLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKD----QETFARVSGYVEQQDIHSP 877 (1391)
T ss_pred eEhhhcCceEecCC--ceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCc----hhhhccccceeecccccCc
Confidence 45788888778888 89999999999999999999987532 2467888775431 1233444445544 33367
Q ss_pred CCcchhhhHhhhccC---CCCHH---HHHHHHHHHhhhcCCCeeeeccccc-----hhchHHHHHHHHhhhhhcCCCeEE
Q psy11993 473 KHGGREMVQLFEKGY---GKDPA---EIAFRAISHARDMHIDVVLIDTAGR-----MQDNEPLMRALAKLVKVNQPDLLL 541 (630)
Q Consensus 473 ~~tv~env~l~~~~~---~~d~~---~ia~~ai~~a~~~~~D~vlIDTaGr-----~~~~~~L~~aL~kl~~~~~Pd~VL 541 (630)
..||+|-+.+-.... ..+.. +-..++++.+++..+..-+|-.+|. ++.+..+.-+|. ++|..+|
T Consensus 878 ~~TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~daiVG~~G~GLs~eQRKrLTIgVELv-----A~P~~il 952 (1391)
T KOG0065|consen 878 ELTVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYADALVGLPGSGLSTEQRKRLTIGVELV-----ANPSSIL 952 (1391)
T ss_pred ccchHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhhhhhccCCCCCCCHHHhceeeEEEEEe-----cCCceeE
Confidence 899999998865332 12222 3466677777777665445555552 223333344444 7999999
Q ss_pred EEeccccCccHHHHHHHHHHHHhhcccCCCCC-----CeeEEEEcccCCcCccHHHHHHHHHHhCCcEEEEecCCC
Q psy11993 542 FVGEALVGNEAVDQLVKFNNAMADHSLSDNPH-----LIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGTGQT 612 (630)
Q Consensus 542 lV~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~-----~i~gIIlTK~D~~~~~~G~~ls~~~~~g~PI~fvg~Gq~ 612 (630)
|+|||++|+|+..-... -+.+++.+..++.. .+...|+-.||+. =++..-|+-|.|-.-||+
T Consensus 953 FLDEPTSGLDsqaA~~i-~~~lrkla~tGqtIlCTIHQPS~~ife~FD~L--------LLLkrGGqtVY~G~lG~~ 1019 (1391)
T KOG0065|consen 953 FLDEPTSGLDSQAAAIV-MRFLRKLADTGQTILCTIHQPSIDIFEAFDEL--------LLLKRGGQTVYFGPLGEN 1019 (1391)
T ss_pred EecCCCCCccHHHHHHH-HHHHHHHHhcCCeEEEEecCCcHHHHHHHhHH--------HHHhcCCeEEEecCcccc
Confidence 99999999998654433 34555555433211 1111233334432 234455666666556665
No 405
>PHA02518 ParA-like protein; Provisional
Probab=98.79 E-value=2e-07 Score=92.19 Aligned_cols=163 Identities=15% Similarity=0.133 Sum_probs=91.7
Q ss_pred EEEEEccC-CCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccCCCcCCcchhhhHhhhccCCCCH
Q psy11993 413 VMAFCGVN-GVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHPAAKHGGREMVQLFEKGYGKDP 491 (630)
Q Consensus 413 vi~lvGpN-GvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~~~~~tv~env~l~~~~~~~d~ 491 (630)
+|+|++.- ||||||++..||.++...+.+|+++++|+++.... .+.. ..... ..+..... +
T Consensus 2 ii~v~~~KGGvGKTT~a~~la~~la~~g~~vlliD~D~q~~~~~-~~~~----~~~~~--------~~i~~~~~--~--- 63 (211)
T PHA02518 2 IIAVLNQKGGAGKTTVATNLASWLHADGHKVLLVDLDPQGSSTD-WAEA----REEGE--------PLIPVVRM--G--- 63 (211)
T ss_pred EEEEEcCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCCCChHH-HHHh----cccCC--------CCCchhhc--c---
Confidence 67788666 59999999999999999999999999999765432 2211 11000 01111110 0
Q ss_pred HHHHHHHHHHhhhcCCCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCccHHHHHHHHHHHHhhcccCCC
Q psy11993 492 AEIAFRAISHARDMHIDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQLVKFNNAMADHSLSDN 571 (630)
Q Consensus 492 ~~ia~~ai~~a~~~~~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~Dav~ql~~f~~~l~~~~~~~~ 571 (630)
....+.+..+ ...||+|+|||+|+... +++... ...|.+|++.+|..- .+..+..+.+.+..+.....
T Consensus 64 -~~~~~~l~~~-~~~~d~viiD~p~~~~~---~~~~~l-----~~aD~viip~~ps~~--~~~~~~~~~~~~~~~~~~~~ 131 (211)
T PHA02518 64 -KSIRADLPKV-ASGYDYVVVDGAPQDSE---LARAAL-----RIADMVLIPVQPSPF--DIWAAPDLVELIKARQEVTD 131 (211)
T ss_pred -HHHHHHHHHH-hccCCEEEEeCCCCccH---HHHHHH-----HHCCEEEEEeCCChh--hHHHHHHHHHHHHHHHhhCC
Confidence 1112233333 34699999999998532 222222 244788888888532 22222223333332211111
Q ss_pred CCCeeEEEEcccCCcCccHHHHHHHHHHhCCcEE
Q psy11993 572 PHLIDGIVLTKFDTIDDKVGAAISMTYITGQPIV 605 (630)
Q Consensus 572 ~~~i~gIIlTK~D~~~~~~G~~ls~~~~~g~PI~ 605 (630)
.....++|+++++........+..+....+.|+.
T Consensus 132 ~~~~~~iv~n~~~~~~~~~~~~~~~l~~~~~~~~ 165 (211)
T PHA02518 132 GLPKFAFIISRAIKNTQLYREARKALAGYGLPIL 165 (211)
T ss_pred CCceEEEEEeccCCcchHHHHHHHHHHHcCchhh
Confidence 2345678899987542223456666655666654
No 406
>KOG0054|consensus
Probab=98.79 E-value=1.2e-08 Score=124.07 Aligned_cols=156 Identities=19% Similarity=0.133 Sum_probs=110.1
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccCCCcCCcc
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHPAAKHGG 476 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~~~~~tv 476 (630)
..|+||+|.++.| +.+++||+.|||||+++..|.|-+....|+|.+.+. ..+..|.+=....|+
T Consensus 535 ~tL~dIn~~i~~G--~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~gs--------------iaYv~Q~pWI~ngTv 598 (1381)
T KOG0054|consen 535 PTLKDINFEIKKG--QLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNGS--------------VAYVPQQPWIQNGTV 598 (1381)
T ss_pred ccccceeEEecCC--CEEEEECCCCCCHHHHHHHHhcCcccccceEEEcCe--------------EEEeccccHhhCCcH
Confidence 4899999999999 999999999999999999999999999999998775 122333222346799
Q ss_pred hhhhHhhhccCCCCHHHHHHHH------HHHhhhcCCCee-----eeccccchhchHHHHHHHHhhhhhcCCCeEEEEec
Q psy11993 477 REMVQLFEKGYGKDPAEIAFRA------ISHARDMHIDVV-----LIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGE 545 (630)
Q Consensus 477 ~env~l~~~~~~~d~~~ia~~a------i~~a~~~~~D~v-----lIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E 545 (630)
++||.+... +....-+...++ ++.+.. -|.- =+..|||+++|..|+||+- .+. .+.++||
T Consensus 599 reNILFG~~-~d~~rY~~Vi~aC~L~~Dle~Lp~--GD~TeIGErGinLSGGQKqRIsLARAVY-----~~a-dIYLLDD 669 (1381)
T KOG0054|consen 599 RENILFGSP-YDEERYDKVIKACALKKDLEILPF--GDLTEIGERGINLSGGQKQRISLARAVY-----QDA-DIYLLDD 669 (1381)
T ss_pred HHhhhcCcc-ccHHHHHHHHHHccCHhHHhhcCC--CCcceecCCccCCcHhHHHHHHHHHHHh-----ccC-CEEEEcC
Confidence 999977532 222221222122 111111 1322 2456999999999999998 555 4666999
Q ss_pred cccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 546 ALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 546 ~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
|+.+.|+.---..|++.+..+- ++-+.|++|+
T Consensus 670 plSAVDahvg~~if~~ci~~~L-----~~KT~ILVTH 701 (1381)
T KOG0054|consen 670 PLSAVDAHVGKHIFEECIRGLL-----RGKTVILVTH 701 (1381)
T ss_pred cchhhhHhhhHHHHHHHHHhhh-----cCCEEEEEeC
Confidence 9999998776677877774432 3567788887
No 407
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=98.78 E-value=3.8e-08 Score=104.83 Aligned_cols=179 Identities=14% Similarity=0.059 Sum_probs=116.7
Q ss_pred hhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccCCCcCCcchh
Q psy11993 399 LRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHPAAKHGGRE 478 (630)
Q Consensus 399 L~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~~~~~tv~e 478 (630)
+..|++.+++| +++.|+|.|||||||++..|.|.++|+.|+|++.+..+. .+++..|...+...+.
T Consensus 339 vgPiNl~ikrG--elvFliG~NGsGKST~~~LLtGL~~PqsG~I~ldg~pV~----~e~ledYR~LfSavFs-------- 404 (546)
T COG4615 339 VGPINLTIKRG--ELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVS----AEQLEDYRKLFSAVFS-------- 404 (546)
T ss_pred ecceeeEEecC--cEEEEECCCCCcHHHHHHHHhcccCCCCCceeECCccCC----CCCHHHHHHHHHHHhh--------
Confidence 56788889999 999999999999999999999999999999999987762 2455555544432111
Q ss_pred hhHhhhccCC----CCHHHHHHHHHHHhh------hcCCCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEecccc
Q psy11993 479 MVQLFEKGYG----KDPAEIAFRAISHAR------DMHIDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALV 548 (630)
Q Consensus 479 nv~l~~~~~~----~d~~~ia~~ai~~a~------~~~~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~ 548 (630)
...++....+ ..+..+ ..-++.++ ..+-.....+.|.|+..+..+.-++. +-..|++.||-.+
T Consensus 405 DyhLF~~ll~~e~~as~q~i-~~~LqrLel~~ktsl~d~~fs~~kLStGQkKRlAll~All------EeR~Ilv~DEWAA 477 (546)
T COG4615 405 DYHLFDQLLGPEGKASPQLI-EKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALLLALL------EERDILVLDEWAA 477 (546)
T ss_pred hHhhhHhhhCCccCCChHHH-HHHHHHHHHhhhhcccCCcccccccccchHHHHHHHHHHH------hhCCeEEeehhhc
Confidence 1222222111 222222 11222222 22234557788999988888877776 2235777899988
Q ss_pred CccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcccCCcCccHHHHHHHHHHhCCcEE
Q psy11993 549 GNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTIDDKVGAAISMTYITGQPIV 605 (630)
Q Consensus 549 g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK~D~~~~~~G~~ls~~~~~g~PI~ 605 (630)
-+|..-...-+...+....++ +-+.+.+|+=| ...+.+--+.+..+-.++
T Consensus 478 DQDPaFRR~FY~~lLp~LK~q----GKTI~aIsHDd---~YF~~ADrll~~~~G~~~ 527 (546)
T COG4615 478 DQDPAFRREFYQVLLPLLKEQ----GKTIFAISHDD---HYFIHADRLLEMRNGQLS 527 (546)
T ss_pred cCChHHHHHHHHHHhHHHHHh----CCeEEEEecCc---hhhhhHHHHHHHhcCcee
Confidence 899875433334444555443 67889999844 467777777765544444
No 408
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=98.76 E-value=1.6e-07 Score=93.18 Aligned_cols=159 Identities=20% Similarity=0.201 Sum_probs=88.9
Q ss_pred CeEEEEEccC-CCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHH------HHHhhhcccCCCc---CCcchhhh
Q psy11993 411 PFVMAFCGVN-GVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLR------THVRHLCSLHPAA---KHGGREMV 480 (630)
Q Consensus 411 p~vi~lvGpN-GvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr------~~~~~l~~~~~~~---~~tv~env 480 (630)
+++|+|+++. |+||||++..||..+...+.+|+++++|++.+.....+. .+...+.....+. ..+..+|+
T Consensus 17 ~kvI~v~s~kgG~GKTt~a~~LA~~la~~G~rVllID~D~~~~~l~~~~~~~~~~~~l~~~l~~~~~l~~~i~~~~~~~l 96 (204)
T TIGR01007 17 IKVLLITSVKPGEGKSTTSANIAVAFAQAGYKTLLIDGDMRNSVMSGTFKSQNKITGLTNFLSGTTDLSDAICDTNIENL 96 (204)
T ss_pred CcEEEEecCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCCChhHHHHhCCCCCCCCHHHHhcCCCCHHHhcccCCCCCE
Confidence 5899999666 899999999999999999999999999996643221111 0111111100000 00111344
Q ss_pred HhhhccCC-CCHHH-----HHHHHHHHhhhcCCCeeeeccccchh-chHHHHHHHHhhhhhcCCCeEEEEeccc-cCccH
Q psy11993 481 QLFEKGYG-KDPAE-----IAFRAISHARDMHIDVVLIDTAGRMQ-DNEPLMRALAKLVKVNQPDLLLFVGEAL-VGNEA 552 (630)
Q Consensus 481 ~l~~~~~~-~d~~~-----ia~~ai~~a~~~~~D~vlIDTaGr~~-~~~~L~~aL~kl~~~~~Pd~VLlV~E~~-~g~Da 552 (630)
.++..+.. .++.. ...++++.+. ..||+|+|||++... .+..+ +. ...|.+++|.++. .+...
T Consensus 97 ~~l~~g~~~~~~~~~l~~~~l~~~l~~l~-~~yD~ViiD~pp~~~~~~~~~---~~-----~~~D~vilV~~~~~~~~~~ 167 (204)
T TIGR01007 97 FVITSGPVPPNPTELLQSSNFKTLIETLR-KYFDYIIIDTPPIGTVTDAAI---IA-----RACDASILVTDAGEIKKRD 167 (204)
T ss_pred EEEeCCCCCCCHHHHhCcHHHHHHHHHHH-hcCCEEEEeCCCccccchHHH---HH-----HhCCeEEEEEECCCCCHHH
Confidence 44432221 12221 2334555554 579999999997432 12211 22 1236788888774 23332
Q ss_pred HHHHHHHHHHHhhcccCCCCCCeeEEEEcccCCc
Q psy11993 553 VDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTI 586 (630)
Q Consensus 553 v~ql~~f~~~l~~~~~~~~~~~i~gIIlTK~D~~ 586 (630)
+....+.+... ...+.|+|+||++..
T Consensus 168 ---~~~~~~~l~~~-----~~~~~gvVlN~~~~~ 193 (204)
T TIGR01007 168 ---VQKAKEQLEQT-----GSNFLGVVLNKVDIS 193 (204)
T ss_pred ---HHHHHHHHHhC-----CCCEEEEEEeCcccc
Confidence 22322333221 236889999999864
No 409
>KOG2355|consensus
Probab=98.76 E-value=2.3e-08 Score=98.47 Aligned_cols=190 Identities=16% Similarity=0.159 Sum_probs=114.0
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHH------HH-HHHhhhccc-
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQ------LR-THVRHLCSL- 468 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQ------Lr-~~~~~l~~~- 468 (630)
+++-|+++.++.| .-..+||.||+||||+++.|++-....++.|.+.+.|.|+-...+- |. .|.......
T Consensus 28 P~~~Dfnldlp~g--sRcLlVGaNGaGKtTlLKiLsGKhmv~~~~v~VlgrsaFhDt~l~~Sgdl~YLGgeW~~~~~~ag 105 (291)
T KOG2355|consen 28 PIFFDFNLDLPAG--SRCLLVGANGAGKTTLLKILSGKHMVGGGVVQVLGRSAFHDTSLESSGDLSYLGGEWSKTVGIAG 105 (291)
T ss_pred ceEEEEeeccCCC--ceEEEEecCCCchhhhHHHhcCcccccCCeEEEcCcCccccccccccCceeEecccccccccccc
Confidence 4556788888888 7889999999999999999998777777999999999998322211 10 011111110
Q ss_pred -CC-CcCCcchhhhHhhhccCCCCHHHHHHHHHHHhhhcCCCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEecc
Q psy11993 469 -HP-AAKHGGREMVQLFEKGYGKDPAEIAFRAISHARDMHIDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEA 546 (630)
Q Consensus 469 -~~-~~~~tv~env~l~~~~~~~d~~~ia~~ai~~a~~~~~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~ 546 (630)
.| ....++..++. ...+.++ +...+.+..+.. +....+--.|-++.++..++.-|. +|-.||+++|-
T Consensus 106 evplq~D~sae~mif---gV~g~dp-~Rre~LI~iLDI-dl~WRmHkvSDGqrRRVQicMGLL------~PfkVLLLDEV 174 (291)
T KOG2355|consen 106 EVPLQGDISAEHMIF---GVGGDDP-ERREKLIDILDI-DLRWRMHKVSDGQRRRVQICMGLL------KPFKVLLLDEV 174 (291)
T ss_pred cccccccccHHHHHh---hccCCCh-hHhhhhhhheec-cceEEEeeccccchhhhHHHHhcc------cceeEEEeeee
Confidence 01 11223332221 1123344 333333322211 112223444556667777766654 88899999999
Q ss_pred ccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcc-cCCcCccHHHHHHHHHHhCCcEEEEecCCCCc
Q psy11993 547 LVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTK-FDTIDDKVGAAISMTYITGQPIVFVGTGQTYT 614 (630)
Q Consensus 547 ~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK-~D~~~~~~G~~ls~~~~~g~PI~fvg~Gq~v~ 614 (630)
++-+|.+..+..++ .++.=. ..++-+.+..|+ ||.. ..+..-+.|+..|.-+.
T Consensus 175 TVDLDVlARadLLe-FlkeEc---e~RgatIVYATHIFDGL-----------e~Wpthl~yi~~Gkl~~ 228 (291)
T KOG2355|consen 175 TVDLDVLARADLLE-FLKEEC---EQRGATIVYATHIFDGL-----------ETWPTHLVYIKSGKLVD 228 (291)
T ss_pred EeehHHHHHHHHHH-HHHHHH---hhcCcEEEEEeeeccch-----------hhcchhEEEecCCeeee
Confidence 99999887654321 222111 346788888898 7764 23344588888887543
No 410
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=98.75 E-value=5.6e-09 Score=104.89 Aligned_cols=151 Identities=15% Similarity=0.073 Sum_probs=82.9
Q ss_pred eEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccCCCcCCcchhhhHhhhccC----
Q psy11993 412 FVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHPAAKHGGREMVQLFEKGY---- 487 (630)
Q Consensus 412 ~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~~~~~tv~env~l~~~~~---- 487 (630)
++++|+||||+||||++..|+..+ +.+..+.. ..++..+ +......+.+++.+.+.++...+
T Consensus 26 ~i~~ivGpNGaGKSTll~~i~~~~----------G~~~~~~~-~~~i~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (212)
T cd03274 26 SFSAIVGPNGSGKSNVIDSMLFVF----------GFRASKMR-QKKLSDL---IHNSAGHPNLDSCSVEVHFQEIIDKPL 91 (212)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh----------ccCHHHhh-hhhHHHH---hcCCCCCCCCceEEEEEEEEeCCCHHH
Confidence 699999999999999999998442 22211100 1122221 22222244556666665554321
Q ss_pred ----CCCHHHH-----HHHHHHHhhhc-CCCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCccHHHHHH
Q psy11993 488 ----GKDPAEI-----AFRAISHARDM-HIDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQLV 557 (630)
Q Consensus 488 ----~~d~~~i-----a~~ai~~a~~~-~~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~Dav~ql~ 557 (630)
+...... ..++.+.+... ..+..+-..+++++++..++++++. ....|..++++|||+.|+|.... .
T Consensus 92 l~~~g~~~~~~~~~v~~~~~~~~~~L~~~~~~~~~~lS~G~~~r~~la~al~~--~~~~~p~ililDEPt~gLD~~~~-~ 168 (212)
T cd03274 92 LKSKGIDLDHNRFLILQGEVEQIAQMPKKSWKNISNLSGGEKTLSSLALVFAL--HHYKPTPLYVMDEIDAALDFRNV-S 168 (212)
T ss_pred HHHCCcCCCCCceEEcCCcEEEeeccccccccchhhcCHHHHHHHHHHHHHHh--cccCCCCEEEEcCCCcCCCHHHH-H
Confidence 1100000 01111111111 1233456678899999888888751 00123357779999999998765 4
Q ss_pred HHHHHHhhcccCCCCCCeeEEEEcccC
Q psy11993 558 KFNNAMADHSLSDNPHLIDGIVLTKFD 584 (630)
Q Consensus 558 ~f~~~l~~~~~~~~~~~i~gIIlTK~D 584 (630)
.+.+.+.++.. ..+.|++|..+
T Consensus 169 ~l~~~l~~~~~-----~~~~iivs~~~ 190 (212)
T cd03274 169 IVANYIKERTK-----NAQFIVISLRN 190 (212)
T ss_pred HHHHHHHHHcC-----CCEEEEEECcH
Confidence 55666665532 35678888643
No 411
>KOG0927|consensus
Probab=98.72 E-value=2.7e-08 Score=109.53 Aligned_cols=198 Identities=20% Similarity=0.213 Sum_probs=115.2
Q ss_pred hhhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeE--EEeecccC-----------CccHHHH--HHH
Q psy11993 396 VDILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNV--LIAACDTF-----------RAGAVEQ--LRT 460 (630)
Q Consensus 396 ~~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkV--lI~~~Dt~-----------R~ga~eQ--Lr~ 460 (630)
..+++|+.|.+..| +-.+|+||||+||||+|++|++...|..-++ +......- .....++ +..
T Consensus 88 ~~l~kd~~~El~~g--~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d~y~ls~e~~ps~~~av~~v~~~~~~e~~rle~ 165 (614)
T KOG0927|consen 88 VELIKDVTLELNRG--RRYGLIGPNGSGKSTFLRAIAGREVPIPEHIDFYLLSREIEPSEKQAVQAVVMETDHERKRLEY 165 (614)
T ss_pred ceeeeeeeEEecCC--ceEEEEcCCCCcHhHHHHHHhcCCCCCCcccchhhhcccCCCchHHHHHHHhhhhHHHHHHHHH
Confidence 56788899999999 7889999999999999999999877654433 33222210 0011111 111
Q ss_pred HHhhhcccCCCcCCcchhhhHhhhccCCCCHHHHHHHHHHHhhhcCC-----CeeeeccccchhchHHHHHHHHhhhhhc
Q psy11993 461 HVRHLCSLHPAAKHGGREMVQLFEKGYGKDPAEIAFRAISHARDMHI-----DVVLIDTAGRMQDNEPLMRALAKLVKVN 535 (630)
Q Consensus 461 ~~~~l~~~~~~~~~tv~env~l~~~~~~~d~~~ia~~ai~~a~~~~~-----D~vlIDTaGr~~~~~~L~~aL~kl~~~~ 535 (630)
+...+..... ...-.....+++.....++.....++...+...++ +..+.|.|||.+.+..|+++|. .
T Consensus 166 ~~E~l~~~~d--~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~m~~k~~~~~SgGwrmR~aLAr~Lf-----~ 238 (614)
T KOG0927|consen 166 LAEDLAQACD--DKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLSEMQDKKVKDLSGGWRMRAALARALF-----Q 238 (614)
T ss_pred HHHHHHhhcc--chhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHhHHHHHhhccCchHHHHHHHHHHHh-----c
Confidence 2222222100 00111122334443334444444444444443343 4458899999999999999999 8
Q ss_pred CCCeEEEEeccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcccCCcCccHHHHHHHHHHhCCc-EEEEecCCC
Q psy11993 536 QPDLLLFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTIDDKVGAAISMTYITGQP-IVFVGTGQT 612 (630)
Q Consensus 536 ~Pd~VLlV~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK~D~~~~~~G~~ls~~~~~g~P-I~fvg~Gq~ 612 (630)
.|++ |++|||+.++|.-.. .-+.+.|..|.. +..||+++-. |.--|.--++.+....- +.|-|+-..
T Consensus 239 kP~L-LLLDEPtnhLDleA~-~wLee~L~k~d~------~~lVi~sh~Q--Dfln~vCT~Ii~l~~kkl~~y~Gnydq 306 (614)
T KOG0927|consen 239 KPDL-LLLDEPTNHLDLEAI-VWLEEYLAKYDR------IILVIVSHSQ--DFLNGVCTNIIHLDNKKLIYYEGNYDQ 306 (614)
T ss_pred CCCE-EEecCCccCCCHHHH-HHHHHHHHhccC------ceEEEEecch--hhhhhHhhhhheecccceeeecCCHHH
Confidence 9965 459999999986543 334555665542 2455666532 12344444556554444 666665443
No 412
>PRK13768 GTPase; Provisional
Probab=98.71 E-value=2.8e-07 Score=95.19 Aligned_cols=167 Identities=21% Similarity=0.170 Sum_probs=87.5
Q ss_pred CeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccH----HHHHHHHHhhhcccCCCcCCcchhhhHhhhcc
Q psy11993 411 PFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGA----VEQLRTHVRHLCSLHPAAKHGGREMVQLFEKG 486 (630)
Q Consensus 411 p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga----~eQLr~~~~~l~~~~~~~~~tv~env~l~~~~ 486 (630)
++++++.|+.||||||++..++.++...|.+|.+++.|+..... .-.++.+...-.. .......+|..+....
T Consensus 2 ~~~i~v~G~~G~GKTt~~~~~~~~l~~~g~~v~~i~~D~~~~~~~~~~~~~i~~~~~~~~v---~~~~~l~p~~~~~~~~ 78 (253)
T PRK13768 2 MYIVFFLGTAGSGKTTLTKALSDWLEEQGYDVAIVNLDPAVEYLPYTPDFDVRDYVTAREI---MKKYGLGPNGALIASV 78 (253)
T ss_pred cEEEEEECCCCccHHHHHHHHHHHHHhcCCceEEEECCCccccCCCCCCcchhhheeHHHH---HHHcCCCCchHHHHHH
Confidence 47899999999999999999999998889999999999732110 0001111100000 0000000111111000
Q ss_pred CCCCHHHHHHHHHHHhhhcCCCeeeeccccchhch--HHHHHHHHhhhhhcCCCeEEEEeccccCccHHHHHHHH-HHHH
Q psy11993 487 YGKDPAEIAFRAISHARDMHIDVVLIDTAGRMQDN--EPLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQLVKF-NNAM 563 (630)
Q Consensus 487 ~~~d~~~ia~~ai~~a~~~~~D~vlIDTaGr~~~~--~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~Dav~ql~~f-~~~l 563 (630)
.. ...........+...+.|++++||+|..... ..+...+.+.+....++.++++.|+..+.+..+..... ....
T Consensus 79 -~~-~~~~~~~l~~~l~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~ 156 (253)
T PRK13768 79 -DL-LLTKADEIKEEIESLDADYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALS 156 (253)
T ss_pred -HH-HHHHHHHHHHHHHhcCCCEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHH
Confidence 00 0111223344445556799999999975421 22223333333222378899999997665544322211 1111
Q ss_pred hhcccCCCCCCeeEEEEcccCCc
Q psy11993 564 ADHSLSDNPHLIDGIVLTKFDTI 586 (630)
Q Consensus 564 ~~~~~~~~~~~i~gIIlTK~D~~ 586 (630)
.... ......+|+||.|..
T Consensus 157 ~~~~----~~~~~i~v~nK~D~~ 175 (253)
T PRK13768 157 VQLR----LGLPQIPVLNKADLL 175 (253)
T ss_pred HHHH----cCCCEEEEEEhHhhc
Confidence 1000 012446899999976
No 413
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=98.70 E-value=4.8e-07 Score=90.32 Aligned_cols=164 Identities=17% Similarity=0.171 Sum_probs=89.4
Q ss_pred cCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccCCCcCCcchhhhHhhhcc-
Q psy11993 408 QGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHPAAKHGGREMVQLFEKG- 486 (630)
Q Consensus 408 ~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~~~~~tv~env~l~~~~- 486 (630)
.+.+.+++|+|+.|+||||++.+|...+. .+.+|.++..|.......++++.....+ +.+....
T Consensus 19 ~~~~~~i~~~G~~gsGKTTli~~l~~~~~-~~~~v~v~~~~~~~~~D~~~~~~~~~~~--------------~~l~~gci 83 (207)
T TIGR00073 19 KHGLVVLNFMSSPGSGKTTLIEKLIDNLK-DEVKIAVIEGDVITKFDAERLRKYGAPA--------------IQINTGKE 83 (207)
T ss_pred hcCcEEEEEECCCCCCHHHHHHHHHHHHh-cCCeEEEEECCCCCcccHHHHHHcCCcE--------------EEEcCCCc
Confidence 44578999999999999999999998764 3469999999986544445555332111 1111000
Q ss_pred CCCCHHHHHHHHHHHhhhcCCCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCccHHHHHHHHHHHHhhc
Q psy11993 487 YGKDPAEIAFRAISHARDMHIDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQLVKFNNAMADH 566 (630)
Q Consensus 487 ~~~d~~~ia~~ai~~a~~~~~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~Dav~ql~~f~~~l~~~ 566 (630)
....... ...++..+...++|.|+|+|+|...... .+. ...+..+.|.+...+.+... .+...+.
T Consensus 84 c~~~~~~-~~~~l~~~~~~~~d~IiIEt~G~l~~~~----~~~-----~~~~~~i~Vvd~~~~d~~~~---~~~~~~~-- 148 (207)
T TIGR00073 84 CHLDAHM-VAHALEDLPLDDIDLLFIENVGNLVCPA----DFD-----LGEHMRVVLLSVTEGDDKPL---KYPGMFK-- 148 (207)
T ss_pred ccCChHH-HHHHHHHhccCCCCEEEEecCCCcCCCc----ccc-----cccCeEEEEEecCcccchhh---hhHhHHh--
Confidence 0111111 2244444444578999999999432211 010 12234455666655443221 1111111
Q ss_pred ccCCCCCCeeEEEEcccCCcCcc---HHHHHHHHHHh--CCcEEEEe
Q psy11993 567 SLSDNPHLIDGIVLTKFDTIDDK---VGAAISMTYIT--GQPIVFVG 608 (630)
Q Consensus 567 ~~~~~~~~i~gIIlTK~D~~~~~---~G~~ls~~~~~--g~PI~fvg 608 (630)
..+.+++||.|..+.. ...+....... ..||.+++
T Consensus 149 -------~a~iiv~NK~Dl~~~~~~~~~~~~~~l~~~~~~~~i~~~S 188 (207)
T TIGR00073 149 -------EADLIVINKADLAEAVGFDVEKMKADAKKINPEAEIILMS 188 (207)
T ss_pred -------hCCEEEEEHHHccccchhhHHHHHHHHHHhCCCCCEEEEE
Confidence 2357999999976321 22233333333 37777766
No 414
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=98.70 E-value=2.3e-07 Score=92.35 Aligned_cols=176 Identities=19% Similarity=0.281 Sum_probs=92.3
Q ss_pred CeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccCCCc-CCcchhhhHhhhccCCC
Q psy11993 411 PFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHPAA-KHGGREMVQLFEKGYGK 489 (630)
Q Consensus 411 p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~~~-~~tv~env~l~~~~~~~ 489 (630)
|..++|+||+|+||||++.+|...+.+. .++.++..|.+.....+.++.. ..+.+..... ..++..+... ..
T Consensus 1 ~~~i~i~G~~GsGKTTll~~l~~~l~~~-~~~~~~~~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~-----~~ 73 (199)
T TIGR00101 1 PLKIGVAGPVGSGKTALIEALTRALRQK-YQLAVITNDIYTQEDAEFLVKN-SALPPERILGVETGGCPHTAI-----RE 73 (199)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhhCcC-CcEEEEeCCcCChhHHHHHHHc-CCCCcCceehhhcCCCcccee-----cc
Confidence 4689999999999999999999988764 4688888898764433333332 1111110000 0000000000 01
Q ss_pred CHHHHHHHHHHHh--hhcCCCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCccHHHHHHHHHHHHhhcc
Q psy11993 490 DPAEIAFRAISHA--RDMHIDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQLVKFNNAMADHS 567 (630)
Q Consensus 490 d~~~ia~~ai~~a--~~~~~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~Dav~ql~~f~~~l~~~~ 567 (630)
+. .....++... ...++|+++|+|+|.. +...+. ... .+.++.|.++..+.+... .....+
T Consensus 74 ~~-~~~~~~L~~l~~~~~~~D~iiIEt~G~~-----l~~~~~---~~l-~~~~i~vvD~~~~~~~~~---~~~~qi---- 136 (199)
T TIGR00101 74 DA-SMNLEAVAEMEARFPPLEMVFIESGGDN-----LSATFS---PEL-ADLTIFVIDVAAGDKIPR---KGGPGI---- 136 (199)
T ss_pred CH-HHHHHHHHHHHhcCCCCCEEEEECCCCC-----cccccc---hhh-hCcEEEEEEcchhhhhhh---hhHhHh----
Confidence 11 1122233322 2346899999999942 111111 001 135777888876655221 111111
Q ss_pred cCCCCCCeeEEEEcccCCcC---ccHHHHHHHHHH--hCCcEEEEe--cCCCCcc
Q psy11993 568 LSDNPHLIDGIVLTKFDTID---DKVGAAISMTYI--TGQPIVFVG--TGQTYTD 615 (630)
Q Consensus 568 ~~~~~~~i~gIIlTK~D~~~---~~~G~~ls~~~~--~g~PI~fvg--~Gq~v~D 615 (630)
..-+.+++||.|..+ ...-.+...+.. .+.|+.++. +|+.+.+
T Consensus 137 -----~~ad~~~~~k~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~g~gi~e 186 (199)
T TIGR00101 137 -----TRSDLLVINKIDLAPMVGADLGVMERDAKKMRGEKPFIFTNLKTKEGLDT 186 (199)
T ss_pred -----hhccEEEEEhhhccccccccHHHHHHHHHHhCCCCCEEEEECCCCCCHHH
Confidence 124679999999862 122233333333 457777665 5666543
No 415
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=98.66 E-value=1.6e-07 Score=93.99 Aligned_cols=182 Identities=18% Similarity=0.150 Sum_probs=95.6
Q ss_pred EEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHH------HHHHhhhcc-----cCCCc--CCcchhh
Q psy11993 413 VMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQL------RTHVRHLCS-----LHPAA--KHGGREM 479 (630)
Q Consensus 413 vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQL------r~~~~~l~~-----~~~~~--~~tv~en 479 (630)
+|++.|.-||||||+...||..+...|.+|+++++|+...... .+ ..+...+.. ..... ..+..+|
T Consensus 2 ~iav~gKGGvGKTt~~~nLA~~la~~G~rvLliD~D~q~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (212)
T cd02117 2 QIAIYGKGGIGKSTTSQNLSAALAEMGKKVLQVGCDPKADSTR-LLLGGKAPTTILELAAEDGHVEDLELEDVIFEGFGG 80 (212)
T ss_pred EEEEECCCcCcHHHHHHHHHHHHHHCCCcEEEEeCCCCCCccc-cccCCCCCCCHHHHHhhhCCcCCcChhHeeEeCCCC
Confidence 6888999999999999999999999999999999998643221 11 001111110 00000 0011234
Q ss_pred hHhhhccCCCC------HH----HHHHHHHHHhhhcCCCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccC
Q psy11993 480 VQLFEKGYGKD------PA----EIAFRAISHARDMHIDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVG 549 (630)
Q Consensus 480 v~l~~~~~~~d------~~----~ia~~ai~~a~~~~~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g 549 (630)
+.+...+.... .. ....+.+..+ ...||+|+|||+|+...+..+ ..+. ....|.++++.+|..
T Consensus 81 l~vlp~~~~~~~~~~~~~~~~~~~~~l~~l~~~-~~~yD~ilID~~g~~~~~~~~-~~l~----~~~ad~vliv~~p~~- 153 (212)
T cd02117 81 VKCVESGGPEPGVGCAGRGVITAVNLLEKEGFA-EDDLDVVLYDVLGDVVCGGFA-MPIR----EGKADEIYIVTSGEF- 153 (212)
T ss_pred cEEEeCCCCCCCcccCCcchhhHHHHHHhcccc-ccCCCEEEEecCCCceecccc-cccc----cccCcEEEEEecccH-
Confidence 44443222110 00 0011122222 346999999997765322211 1111 013467888887732
Q ss_pred ccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcccCCcCccHHHHHHHHHHhCCcEE
Q psy11993 550 NEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTIDDKVGAAISMTYITGQPIV 605 (630)
Q Consensus 550 ~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK~D~~~~~~G~~ls~~~~~g~PI~ 605 (630)
.++.-+..+.+.++.+... ....+.|+|+|+++.. .....+-.+....+.|+.
T Consensus 154 -~sl~~~~~l~~~i~~~~~~-~~~~~~gvv~N~~~~~-~~~~~~~~~~~~~~~~vl 206 (212)
T cd02117 154 -MALYAANNICKGIRKYAKS-GGVRLGGLICNSRNTD-RETELIDAFAERLGTQVI 206 (212)
T ss_pred -HHHHHHHHHHHHHHHhCcc-cCCcEEEEEEeCCCCc-cHHHHHHHHHHHcCCCEE
Confidence 1222223333334433321 1345789999999863 233344456666676653
No 416
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=98.65 E-value=6e-07 Score=86.51 Aligned_cols=131 Identities=20% Similarity=0.129 Sum_probs=79.7
Q ss_pred EEEE-ccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccCCCcCCcchhhhHhhhccCCCCHH
Q psy11993 414 MAFC-GVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHPAAKHGGREMVQLFEKGYGKDPA 492 (630)
Q Consensus 414 i~lv-GpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~~~~~tv~env~l~~~~~~~d~~ 492 (630)
|+++ +..|+||||+...||.++...|.+|++++.|.++......++ + ....
T Consensus 2 i~v~s~kgG~GKTt~a~~LA~~la~~g~~vllvD~D~q~~~~~~~~~------~----------------------~~~~ 53 (169)
T cd02037 2 IAVMSGKGGVGKSTVAVNLALALAKLGYKVGLLDADIYGPSIPKMWR------G----------------------PMKM 53 (169)
T ss_pred EEEecCCCcCChhHHHHHHHHHHHHcCCcEEEEeCCCCCCCchHHHh------C----------------------cchH
Confidence 4444 556999999999999999999999999999997754221100 0 0001
Q ss_pred HHHHHHHHHhhhcCCCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCccHHHHHHHHHHHHhhcccCCCC
Q psy11993 493 EIAFRAISHARDMHIDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQLVKFNNAMADHSLSDNP 572 (630)
Q Consensus 493 ~ia~~ai~~a~~~~~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~Dav~ql~~f~~~l~~~~~~~~~ 572 (630)
......++.....+||+|++||+++... ..+ ..+. ...-|.++++..|.. .....+..+.+.+.++ .
T Consensus 54 ~~l~~~~~~~~~~~yD~VIiD~pp~~~~-~~~-~~~~----~~~ad~viiV~~p~~--~s~~~~~~~~~~l~~~-----~ 120 (169)
T cd02037 54 GAIKQFLTDVDWGELDYLVIDMPPGTGD-EHL-TLAQ----SLPIDGAVIVTTPQE--VALDDVRKAIDMFKKV-----N 120 (169)
T ss_pred HHHHHHHHHhhcCCCCEEEEeCCCCCcH-HHH-HHHh----ccCCCeEEEEECCch--hhHHHHHHHHHHHHhc-----C
Confidence 1112223323335799999999998642 221 1110 123367888887753 2344444444445433 2
Q ss_pred CCeeEEEEcccCC
Q psy11993 573 HLIDGIVLTKFDT 585 (630)
Q Consensus 573 ~~i~gIIlTK~D~ 585 (630)
..+.|+|+|+.+.
T Consensus 121 ~~~~gvv~N~~~~ 133 (169)
T cd02037 121 IPILGVVENMSYF 133 (169)
T ss_pred CCeEEEEEcCCcc
Confidence 3577999999874
No 417
>KOG0927|consensus
Probab=98.64 E-value=1.1e-07 Score=104.70 Aligned_cols=147 Identities=18% Similarity=0.117 Sum_probs=87.7
Q ss_pred hhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHH-HhhhcccCCCcCCcc
Q psy11993 398 ILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTH-VRHLCSLHPAAKHGG 476 (630)
Q Consensus 398 iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~-~~~l~~~~~~~~~tv 476 (630)
++++++|.+..+ .-+++|||||+||||+++.+.+.+.|+.|.|---.-..+ +-..| | +..++. ..+.
T Consensus 405 iy~~l~fgid~~--srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H~~~--~~y~Q---h~~e~ldl-----~~s~ 472 (614)
T KOG0927|consen 405 IYKKLNFGIDLD--SRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSHNKL--PRYNQ---HLAEQLDL-----DKSS 472 (614)
T ss_pred hhhhhhcccCcc--cceeEecCCCCchhhhHHHHhhccccccccccccccccc--hhhhh---hhHhhcCc-----chhH
Confidence 455556666666 789999999999999999999999999887754432221 11111 1 111111 1111
Q ss_pred hhhhHhhhccCC-CCHHHHHHHHHHHhhhc-CCCeee-eccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCccHH
Q psy11993 477 REMVQLFEKGYG-KDPAEIAFRAISHARDM-HIDVVL-IDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAV 553 (630)
Q Consensus 477 ~env~l~~~~~~-~d~~~ia~~ai~~a~~~-~~D~vl-IDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~Dav 553 (630)
+.++-..+. ....+..+.++.+.... +.+++. -..|++++.+...++.+. ..| -+|++|||+.++|..
T Consensus 473 ---le~~~~~~~~~~~~e~~r~ilgrfgLtgd~q~~p~~~LS~Gqr~rVlFa~l~~-----kqP-~lLlLDEPtnhLDi~ 543 (614)
T KOG0927|consen 473 ---LEFMMPKFPDEKELEEMRSILGRFGLTGDAQVVPMSQLSDGQRRRVLFARLAV-----KQP-HLLLLDEPTNHLDIE 543 (614)
T ss_pred ---HHHHHHhccccchHHHHHHHHHHhCCCccccccchhhcccccchhHHHHHHHh-----cCC-cEEEecCCCcCCCch
Confidence 222222222 23444445555554443 233444 456999988888877666 567 566699999999854
Q ss_pred HHHHHHHHHHhhc
Q psy11993 554 DQLVKFNNAMADH 566 (630)
Q Consensus 554 ~ql~~f~~~l~~~ 566 (630)
. .....+++..|
T Consensus 544 t-id~laeaiNe~ 555 (614)
T KOG0927|consen 544 T-IDALAEAINEF 555 (614)
T ss_pred h-HHHHHHHHhcc
Confidence 3 34445555444
No 418
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=98.64 E-value=5.2e-07 Score=91.16 Aligned_cols=149 Identities=17% Similarity=0.213 Sum_probs=88.1
Q ss_pred EEEEE-ccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccCCCcCCcchhhhHhhhccCCCCH
Q psy11993 413 VMAFC-GVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHPAAKHGGREMVQLFEKGYGKDP 491 (630)
Q Consensus 413 vi~lv-GpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~~~~~tv~env~l~~~~~~~d~ 491 (630)
+|.|+ .--|+||||++..||..+..+|.+|.|+++|+.|+-+. .+.++..-+. ++ +++.++ ..+.
T Consensus 3 vItf~s~KGGaGKTT~~~~LAs~la~~G~~V~lIDaDpn~pl~~--W~~~a~~~~~---~~-----~~~~V~----~~~e 68 (231)
T PF07015_consen 3 VITFASSKGGAGKTTAAMALASELAARGARVALIDADPNQPLAK--WAENAQRPGA---WP-----DRIEVY----EADE 68 (231)
T ss_pred eEEEecCCCCCcHHHHHHHHHHHHHHCCCeEEEEeCCCCCcHHH--HHHhccccCC---CC-----CCeeEE----eccc
Confidence 55555 44589999999999999999999999999999876432 1222222211 10 112222 1223
Q ss_pred HHHHHHHHHHhhhcCCCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCccHHHHHHHHHHHHhhcccCCC
Q psy11993 492 AEIAFRAISHARDMHIDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQLVKFNNAMADHSLSDN 571 (630)
Q Consensus 492 ~~ia~~ai~~a~~~~~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~Dav~ql~~f~~~l~~~~~~~~ 571 (630)
.....++++.+...+||+||+||.|........+-+ ..|+||+-.-+ +.+|+..-++.|+-. .+.....+
T Consensus 69 ~~~l~~~~e~a~~~~~d~VlvDleG~as~~~~~aia--------~sDlVlIP~~~-s~lD~~eA~~t~~~v-~~~~~~~~ 138 (231)
T PF07015_consen 69 LTILEDAYEAAEASGFDFVLVDLEGGASELNDYAIA--------RSDLVLIPMQP-SQLDADEAAKTFKWV-RRLEKAER 138 (231)
T ss_pred hhhHHHHHHHHHhcCCCEEEEeCCCCCchhHHHHHH--------HCCEEEECCCC-ChHHHHHHHHHHHHH-HHHHHhhC
Confidence 334556666666677999999999987654333222 34777753322 233544444444322 22222223
Q ss_pred CCCeeEEEEcccCC
Q psy11993 572 PHLIDGIVLTKFDT 585 (630)
Q Consensus 572 ~~~i~gIIlTK~D~ 585 (630)
+.....|++|++..
T Consensus 139 ~~ip~~Vl~Tr~~~ 152 (231)
T PF07015_consen 139 RDIPAAVLFTRVPA 152 (231)
T ss_pred CCCCeeEEEecCCc
Confidence 33456899999874
No 419
>KOG0066|consensus
Probab=98.64 E-value=1.6e-07 Score=100.83 Aligned_cols=131 Identities=21% Similarity=0.202 Sum_probs=77.6
Q ss_pred eEEEEEccCCCChHHHHHHHHHHHHhcCCe------EEEeecccCCccHHHHHHHHHhhhcccCCCcCCcchhhhHhhhc
Q psy11993 412 FVMAFCGVNGVGKSTNLAKICFWLIENNLN------VLIAACDTFRAGAVEQLRTHVRHLCSLHPAAKHGGREMVQLFEK 485 (630)
Q Consensus 412 ~vi~lvGpNGvGKTTllakLA~~l~~~ggk------VlI~~~Dt~R~ga~eQLr~~~~~l~~~~~~~~~tv~env~l~~~ 485 (630)
.-|+|||||||||||++..|.+-+.|+.|. ..|.-.|. .+.++|+. ...+ +.++.+
T Consensus 614 SRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKnhrL~iG~FdQ---h~~E~L~~-------Eetp--------~EyLqr 675 (807)
T KOG0066|consen 614 SRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKNHRLRIGWFDQ---HANEALNG-------EETP--------VEYLQR 675 (807)
T ss_pred ceeEEECCCCccHHHHHHHHhcCCCCCcchhhccceeeeechhh---hhHHhhcc-------ccCH--------HHHHHH
Confidence 468999999999999999999998887543 22222221 22333321 1000 233333
Q ss_pred cCCCCHHHHHHHHHHHhhhc-C-CCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCccHHHHHHHHHHHH
Q psy11993 486 GYGKDPAEIAFRAISHARDM-H-IDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQLVKFNNAM 563 (630)
Q Consensus 486 ~~~~d~~~ia~~ai~~a~~~-~-~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~Dav~ql~~f~~~l 563 (630)
.+..+- ..++.++...... . ..+-+-|+||++..+..++.-.. ..|| ||+++||+..+|.-. +..+.+++
T Consensus 676 ~FNlpy-q~ARK~LG~fGL~sHAHTikikdLSGGQKaRValaeLal-----~~PD-vlILDEPTNNLDIES-IDALaEAI 747 (807)
T KOG0066|consen 676 KFNLPY-QEARKQLGTFGLASHAHTIKIKDLSGGQKARVALAELAL-----GGPD-VLILDEPTNNLDIES-IDALAEAI 747 (807)
T ss_pred hcCCCh-HHHHHHhhhhhhhhccceEeeeecCCcchHHHHHHHHhc-----CCCC-EEEecCCCCCcchhh-HHHHHHHH
Confidence 333322 2233343322221 1 23457899999988887764333 5785 555999999988543 45667778
Q ss_pred hhccc
Q psy11993 564 ADHSL 568 (630)
Q Consensus 564 ~~~~~ 568 (630)
.+|..
T Consensus 748 ney~G 752 (807)
T KOG0066|consen 748 NEYNG 752 (807)
T ss_pred HhccC
Confidence 77753
No 420
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=98.62 E-value=1.4e-06 Score=88.88 Aligned_cols=150 Identities=21% Similarity=0.238 Sum_probs=80.2
Q ss_pred eEEEEEccC-CCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccCCCcCCcchhhhHhhhccCCCC
Q psy11993 412 FVMAFCGVN-GVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHPAAKHGGREMVQLFEKGYGKD 490 (630)
Q Consensus 412 ~vi~lvGpN-GvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~~~~~tv~env~l~~~~~~~d 490 (630)
.+|+|.+.= ||||||++..||.++...|.+|+++++|.++.... .... ..... .++.. ... ....
T Consensus 2 ~iI~v~n~KGGvGKTT~a~nLA~~la~~G~~VlliD~DpQ~s~~~-w~~~---~~~~~-~~~~~-----~~~----~~~~ 67 (231)
T PRK13849 2 KLLTFCSFKGGAGKTTALMGLCAALASDGKRVALFEADENRPLTR-WKEN---ALRSN-TWDPA-----CEV----YAAD 67 (231)
T ss_pred eEEEEECCCCCccHHHHHHHHHHHHHhCCCcEEEEeCCCCCCHHH-HHHh---hcccc-CCCcc-----cee----cCCC
Confidence 356666444 89999999999999999999999999999765322 2111 11100 00000 000 0111
Q ss_pred HHHHHHHHHHHhhhcCCCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCccHHHHHHHHHHHHhhcccCC
Q psy11993 491 PAEIAFRAISHARDMHIDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQLVKFNNAMADHSLSD 570 (630)
Q Consensus 491 ~~~ia~~ai~~a~~~~~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~Dav~ql~~f~~~l~~~~~~~ 570 (630)
........++.+...+||+++|||+|.... ....+|. ..|.+|+...|. ..+ +..+..+...+.+.....
T Consensus 68 ~~~~l~~~l~~~~~~~yD~iiID~pp~~~~--~~~~al~------~aD~vliP~~ps-~~d-~~~~~~~~~~v~~~~~~~ 137 (231)
T PRK13849 68 ELPLLEAAYEDAELQGFDYALADTHGGSSE--LNNTIIA------SSNLLLIPTMLT-PLD-IDEALSTYRYVIELLLSE 137 (231)
T ss_pred HHHHHHHHHHHHhhCCCCEEEEeCCCCccH--HHHHHHH------HCCEEEEeccCc-HHH-HHHHHHHHHHHHHHHHHh
Confidence 222334445444445799999999997642 2222333 346777766663 222 222222222222221111
Q ss_pred CCCCeeEEEEcccCC
Q psy11993 571 NPHLIDGIVLTKFDT 585 (630)
Q Consensus 571 ~~~~i~gIIlTK~D~ 585 (630)
++.....+++|+++.
T Consensus 138 ~~~l~~~iv~~~~~~ 152 (231)
T PRK13849 138 NLAIPTAILRQRVPV 152 (231)
T ss_pred CCCCCeEEEEEeccc
Confidence 222233599999873
No 421
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=98.62 E-value=6.6e-07 Score=86.81 Aligned_cols=167 Identities=20% Similarity=0.247 Sum_probs=86.4
Q ss_pred EEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccCCCcCCcchhhhHhhhccCCCCHHHHH
Q psy11993 416 FCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHPAAKHGGREMVQLFEKGYGKDPAEIA 495 (630)
Q Consensus 416 lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~~~~~tv~env~l~~~~~~~d~~~ia 495 (630)
.-|--|+||||++..||..+ .+|+++++|..++.....+...................+.+.... .+.. ....
T Consensus 5 ~s~kgG~GKSt~a~nLA~~l----~~vlliD~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~ 77 (179)
T cd03110 5 ISGKGGTGKTTVTAALAALL----KNVVLADCDVDAPNLHLFLKPEIEEEEDFIVGGKKAVIDPELCIS--CGLC-GKLV 77 (179)
T ss_pred EcCCCCCCHHHHHHHHHHHH----hCcEEEECCCCCCchhhhcCCCccccccceecCCceEEchhhhcc--ccch-HHHH
Confidence 34667999999999999988 799999999977554321110000000000000000001111100 0000 0111
Q ss_pred HHHHH----HhhhcCCCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCccHHHHHHHHHHHHhhcccCCC
Q psy11993 496 FRAIS----HARDMHIDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQLVKFNNAMADHSLSDN 571 (630)
Q Consensus 496 ~~ai~----~a~~~~~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~Dav~ql~~f~~~l~~~~~~~~ 571 (630)
....+ ......||++++||+|+... .....+ ...|.++++..|... .+..+..+.+.+..+.
T Consensus 78 ~~~~~~~~~~~~~~~~d~viiDtpp~~~~--~~~~~l------~~aD~vliv~~~~~~--~~~~~~~~~~~l~~~~---- 143 (179)
T cd03110 78 TEVRKHAKEIAKAEGAELIIIDGPPGIGC--PVIASL------TGADAALLVTEPTPS--GLHDLERAVELVRHFG---- 143 (179)
T ss_pred HHHHHHHHHhhhhcCCCEEEEECcCCCcH--HHHHHH------HcCCEEEEEecCCcc--cHHHHHHHHHHHHHcC----
Confidence 11111 12236799999999988643 222222 245788888888643 2223333333343221
Q ss_pred CCCeeEEEEcccCCcCccHHHHHHHHHHhCCcEE
Q psy11993 572 PHLIDGIVLTKFDTIDDKVGAAISMTYITGQPIV 605 (630)
Q Consensus 572 ~~~i~gIIlTK~D~~~~~~G~~ls~~~~~g~PI~ 605 (630)
.. .++|+||+|........+..+....|.|+.
T Consensus 144 -~~-~~vV~N~~~~~~~~~~~~~~~~~~~~~~vl 175 (179)
T cd03110 144 -IP-VGVVINKYDLNDEIAEEIEDYCEEEGIPIL 175 (179)
T ss_pred -CC-EEEEEeCCCCCcchHHHHHHHHHHcCCCeE
Confidence 12 379999999753334455566667788864
No 422
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=98.60 E-value=7.2e-07 Score=92.37 Aligned_cols=179 Identities=18% Similarity=0.181 Sum_probs=93.3
Q ss_pred eEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHH-----HHHhhhc------ccCCCc--CCcchh
Q psy11993 412 FVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLR-----THVRHLC------SLHPAA--KHGGRE 478 (630)
Q Consensus 412 ~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr-----~~~~~l~------~~~~~~--~~tv~e 478 (630)
++|+|.|--||||||++..||+.+...|.+|+++++|+... +...+. .....+. ....+. -.+..+
T Consensus 3 ~iIav~~KGGVGKTT~~~nLA~~la~~G~kVLliD~Dpq~~-~t~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~i~~~~~ 81 (270)
T PRK13185 3 LVLAVYGKGGIGKSTTSSNLSAAFAKLGKKVLQIGCDPKHD-STFTLTGKLVPTVIDILEEVDFHSEELRPEDFVYEGYN 81 (270)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeccCCcc-hhhhhcCCCCCcHHHHHHhccccccCCCHHHheeeCCC
Confidence 68888999999999999999999999999999999998432 211110 0011110 000000 001123
Q ss_pred hhHhhhccCCC-----CH--HHHHHHHHHHh-hhcCCCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCc
Q psy11993 479 MVQLFEKGYGK-----DP--AEIAFRAISHA-RDMHIDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGN 550 (630)
Q Consensus 479 nv~l~~~~~~~-----d~--~~ia~~ai~~a-~~~~~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~ 550 (630)
|+.++..+... .. .....+.+..+ ...+||+|+|||+|+...+. +..++. ..|.+|++.+|. .
T Consensus 82 ~l~~ip~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~yD~viIDt~g~~~~~~-~~~~l~------~AD~viip~~~~--~ 152 (270)
T PRK13185 82 GVDCVEAGGPPAGTGCGGYVVGETVKLLKEHHLLDDYDVILFDVLGDVVCGG-FAAPLQ------YADYALIVTAND--F 152 (270)
T ss_pred CcEEEECCCCCCCCCccchhHHHHHHHHHhcCccccCCEEEEecCCCcccCc-ccchhh------hCcEEEEEecCc--h
Confidence 45444221111 00 01111112111 12469999999987764332 222222 336777777763 2
Q ss_pred cHHHHHHHHHHHHhhcccCCCCCCeeEEEEcccCCcCccHHHHHHHHHHhCCcEE
Q psy11993 551 EAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTIDDKVGAAISMTYITGQPIV 605 (630)
Q Consensus 551 Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK~D~~~~~~G~~ls~~~~~g~PI~ 605 (630)
+++.-+..+.+.+..... .....+.|+|+|+.+.. .. +-.+....+.|+.
T Consensus 153 ~sl~~~~~~~~~i~~~~~-~~~l~i~giv~N~~~~~-~~---~~~~~~~~g~~vl 202 (270)
T PRK13185 153 DSIFAANRIAAAIQAKAK-NYKVRLAGVIANRSAGT-DL---IDKFNEAVGLKVL 202 (270)
T ss_pred hhHHHHHHHHHHHHhhhh-ccCCCceEEEEeccChH-HH---HHHHHHHcCCCEE
Confidence 333333333333332211 11234679999997753 22 3344455666654
No 423
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=98.60 E-value=4.5e-08 Score=97.76 Aligned_cols=142 Identities=16% Similarity=0.123 Sum_probs=74.5
Q ss_pred EEEEEccCCCChHHHHHHHHHHH----HhcCCeEEEeecccCCccHHHHHHHHHhhhcccC--C----CcCCcchhhhHh
Q psy11993 413 VMAFCGVNGVGKSTNLAKICFWL----IENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLH--P----AAKHGGREMVQL 482 (630)
Q Consensus 413 vi~lvGpNGvGKTTllakLA~~l----~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~--~----~~~~tv~env~l 482 (630)
+++|+||||+||||++..|++.+ .+..+.+. ...+..+.+.. +.......+.. . ...+++.+++.+
T Consensus 24 ~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~~~~~~-~~~~~i~~~~~---~~~v~~~f~~~~~~~~~v~r~~~~~~~~~~ 99 (204)
T cd03240 24 LTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGA-HDPKLIREGEV---RAQVKLAFENANGKKYTITRSLAILENVIF 99 (204)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHcCCCCccccccc-chHHHHhCCCC---cEEEEEEEEeCCCCEEEEEEEhhHhhceee
Confidence 99999999999999999997544 23333332 11111111110 11111111111 0 111244444422
Q ss_pred hhccCCCCHHHHHHHHHHHhhhcCCCeeeeccccchhchH------HHHHHHHhhhhhcCCCeEEEEeccccCccHHHHH
Q psy11993 483 FEKGYGKDPAEIAFRAISHARDMHIDVVLIDTAGRMQDNE------PLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQL 556 (630)
Q Consensus 483 ~~~~~~~d~~~ia~~ai~~a~~~~~D~vlIDTaGr~~~~~------~L~~aL~kl~~~~~Pd~VLlV~E~~~g~Dav~ql 556 (630)
. ...+ ....+ +..+-+.|++++++. .+++++. ..| .++++|||+.++|.....
T Consensus 100 ~------~~~~-~~~~~--------~~~~~~LS~G~~~~~~la~rlala~al~-----~~p-~illlDEP~~~LD~~~~~ 158 (204)
T cd03240 100 C------HQGE-SNWPL--------LDMRGRCSGGEKVLASLIIRLALAETFG-----SNC-GILALDEPTTNLDEENIE 158 (204)
T ss_pred e------chHH-HHHHH--------hcCccccCccHHHHHHHHHHHHHHHHhc-----cCC-CEEEEcCCccccCHHHHH
Confidence 1 1111 11111 334568899998864 4455554 567 566799999999987644
Q ss_pred HHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 557 VKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 557 ~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
..+.+.+.++.. ..+.+.+++|+
T Consensus 159 ~~l~~~l~~~~~---~~~~~iiiitH 181 (204)
T cd03240 159 ESLAEIIEERKS---QKNFQLIVITH 181 (204)
T ss_pred HHHHHHHHHHHh---ccCCEEEEEEe
Confidence 245555554432 11456788887
No 424
>KOG0062|consensus
Probab=98.60 E-value=1.3e-07 Score=103.77 Aligned_cols=148 Identities=22% Similarity=0.223 Sum_probs=84.2
Q ss_pred hhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeE--EEeecccCCccHHHHHHHHHhhhcccCCCcCCc
Q psy11993 398 ILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNV--LIAACDTFRAGAVEQLRTHVRHLCSLHPAAKHG 475 (630)
Q Consensus 398 iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkV--lI~~~Dt~R~ga~eQLr~~~~~l~~~~~~~~~t 475 (630)
+|.+-++.+..| +-.+|||+||+||||+++.|+.. .-.+..| -+.++|+.- . |--..+..
T Consensus 95 LL~~a~L~L~~G--rRYGLvGrNG~GKsTLLRaia~~-~v~~f~veqE~~g~~t~~---~-~~~l~~D~----------- 156 (582)
T KOG0062|consen 95 LLNKANLTLSRG--RRYGLVGRNGIGKSTLLRAIANG-QVSGFHVEQEVRGDDTEA---L-QSVLESDT----------- 156 (582)
T ss_pred hhcCCceeeecc--cccceeCCCCCcHHHHHHHHHhc-CcCccCchhheeccchHH---H-hhhhhccH-----------
Confidence 455666677788 56699999999999999999981 1112222 244555521 1 10000000
Q ss_pred chhhhHhhhcc----CCCCHHHHHHHHHHHhhhcCCCe-----eeeccccchhchHHHHHHHHhhhhhcCCCeEEEEecc
Q psy11993 476 GREMVQLFEKG----YGKDPAEIAFRAISHARDMHIDV-----VLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEA 546 (630)
Q Consensus 476 v~env~l~~~~----~~~d~~~ia~~ai~~a~~~~~D~-----vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~ 546 (630)
..+.+.... .+....++..++ +...+|+- -.-+.|||...+..|+|||. .+||+ |++|||
T Consensus 157 --~~~dfl~~e~~l~~~~~l~ei~~~~---L~glGFt~emq~~pt~slSGGWrMrlaLARAlf-----~~pDl-LLLDEP 225 (582)
T KOG0062|consen 157 --ERLDFLAEEKELLAGLTLEEIYDKI---LAGLGFTPEMQLQPTKSLSGGWRMRLALARALF-----AKPDL-LLLDEP 225 (582)
T ss_pred --HHHHHHHhhhhhhccchHHHHHHHH---HHhCCCCHHHHhccccccCcchhhHHHHHHHHh-----cCCCE-EeecCC
Confidence 001111110 000111222112 22233321 14567999999999999999 89975 459999
Q ss_pred ccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 547 LVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 547 ~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
+..+|..+.+ =+...|. ...++.+|+++
T Consensus 226 TNhLDv~av~-WLe~yL~-------t~~~T~liVSH 253 (582)
T KOG0062|consen 226 TNHLDVVAVA-WLENYLQ-------TWKITSLIVSH 253 (582)
T ss_pred cccchhHHHH-HHHHHHh-------hCCceEEEEec
Confidence 9999987653 1122232 22589999998
No 425
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=98.56 E-value=3.2e-07 Score=93.96 Aligned_cols=86 Identities=22% Similarity=0.183 Sum_probs=47.9
Q ss_pred CCeeeeccccchhc-----hH---HHHHHHHhhhhhcCCCeEEEEeccccCccHHHHHHHHHHHHhhcccCCCCCCeeEE
Q psy11993 507 IDVVLIDTAGRMQD-----NE---PLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGI 578 (630)
Q Consensus 507 ~D~vlIDTaGr~~~-----~~---~L~~aL~kl~~~~~Pd~VLlV~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gI 578 (630)
.++.+|||+|.... .. ..++.+....-....+.+|+|.++..+....+.+ .+.+.+.. ....+.+
T Consensus 125 ~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l-~ia~~ld~------~~~rti~ 197 (240)
T smart00053 125 LNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDAL-KLAKEVDP------QGERTIG 197 (240)
T ss_pred CceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHH-HHHHHHHH------cCCcEEE
Confidence 57889999998632 12 2334433222222334788888887654332211 22222221 1135567
Q ss_pred EEcccCCcCccHHHHHHHHHHh
Q psy11993 579 VLTKFDTIDDKVGAAISMTYIT 600 (630)
Q Consensus 579 IlTK~D~~~~~~G~~ls~~~~~ 600 (630)
|+||+|.. .....+++++...
T Consensus 198 ViTK~D~~-~~~~~~~~~~~~~ 218 (240)
T smart00053 198 VITKLDLM-DEGTDARDILENK 218 (240)
T ss_pred EEECCCCC-CccHHHHHHHhCC
Confidence 99999997 5665677766543
No 426
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Probab=98.56 E-value=1.2e-06 Score=91.00 Aligned_cols=159 Identities=14% Similarity=0.128 Sum_probs=86.4
Q ss_pred cCCCeEEEEEccC-CCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHH-----HHhhhcccCCCc---CCcchh
Q psy11993 408 QGRPFVMAFCGVN-GVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRT-----HVRHLCSLHPAA---KHGGRE 478 (630)
Q Consensus 408 ~g~p~vi~lvGpN-GvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~-----~~~~l~~~~~~~---~~tv~e 478 (630)
.+.+++|+|+++. |+||||++..||..+...|.+|+++++|..++.....+.. +...+....... .....+
T Consensus 100 ~~~~~vi~vts~~~g~Gktt~a~nLA~~la~~g~~VllID~D~~~~~~~~~~~~~~~~gl~~~l~~~~~~~~i~~~~~~~ 179 (274)
T TIGR03029 100 SEGRKALAVVSAKSGEGCSYIAANLAIVFSQLGEKTLLIDANLRDPVQHRNFKLSEQRGLSDILAGRSDLEVITHIPALE 179 (274)
T ss_pred CCCCeEEEEECCCCCCCHHHHHHHHHHHHHhcCCeEEEEeCCCCCccHHHhcCCCCCCCHHHHhCCCCCHHHeeecCCCC
Confidence 3445899999665 8899999999999999989999999999866442211110 111111100000 011123
Q ss_pred hhHhhhccCC-CCHHH-----HHHHHHHHhhhcCCCeeeeccccchh-chHHHHHHHHhhhhhcCCCeEEEEeccccCcc
Q psy11993 479 MVQLFEKGYG-KDPAE-----IAFRAISHARDMHIDVVLIDTAGRMQ-DNEPLMRALAKLVKVNQPDLLLFVGEALVGNE 551 (630)
Q Consensus 479 nv~l~~~~~~-~d~~~-----ia~~ai~~a~~~~~D~vlIDTaGr~~-~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~D 551 (630)
|+.++..+.. .++.. .....+..++ ..||+|+|||++... .+..++... .|-+++|..+...
T Consensus 180 ~l~~lp~g~~~~~~~~~~~~~~~~~~l~~l~-~~yD~ViiD~pp~~~~~d~~~~~~~--------~d~vilV~~~~~t-- 248 (274)
T TIGR03029 180 NLSVLPAGAIPPNPQELLARPAFTDLLNKVM-GDYDVVIVDTPSAEHSSDAQIVATR--------ARGTLIVSRVNET-- 248 (274)
T ss_pred CEEEEeCcCCCCCHHHHhCcHHHHHHHHHHH-hcCCEEEEeCCCcccccHHHHHHHh--------CCeEEEEEECCCC--
Confidence 4444433221 12221 1234455444 469999999998754 233332222 2567777766321
Q ss_pred HHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 552 AVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 552 av~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
....+....+.+.. ....+-|+|+|+
T Consensus 249 ~~~~~~~~~~~l~~-----~~~~~~G~VlN~ 274 (274)
T TIGR03029 249 RLHELTSLKEHLSG-----VGVRVVGAVLNQ 274 (274)
T ss_pred CHHHHHHHHHHHHh-----CCCCEEEEEeCC
Confidence 12222222222321 134688999985
No 427
>TIGR01969 minD_arch cell division ATPase MinD, archaeal. This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown.
Probab=98.56 E-value=9.8e-07 Score=89.68 Aligned_cols=176 Identities=20% Similarity=0.211 Sum_probs=89.2
Q ss_pred EEEEE-ccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHH------HHHhhhcccCCCcC--CcchhhhHhh
Q psy11993 413 VMAFC-GVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLR------THVRHLCSLHPAAK--HGGREMVQLF 483 (630)
Q Consensus 413 vi~lv-GpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr------~~~~~l~~~~~~~~--~tv~env~l~ 483 (630)
+|+|+ +.-||||||++..||..+...+.+|+++++|+........+. .+...+........ .....++.++
T Consensus 2 ii~v~~~KGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 81 (251)
T TIGR01969 2 IITIASGKGGTGKTTITANLGVALAKLGKKVLALDADITMANLELILGMEDKPVTLHDVLAGEADIKDAIYEGPFGVKVI 81 (251)
T ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHHCCCeEEEEeCCCCCccceeEeCCCCCCCCHHHHhcCCCCHHHheEeCCCCEEEE
Confidence 56666 555899999999999999988999999999985332211000 00111100000000 0001122222
Q ss_pred hccCCC-----CHHHHHHHHHHHhhhcCCCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCccHHHHHHH
Q psy11993 484 EKGYGK-----DPAEIAFRAISHARDMHIDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQLVK 558 (630)
Q Consensus 484 ~~~~~~-----d~~~ia~~ai~~a~~~~~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~Dav~ql~~ 558 (630)
..+... .......+.+..+. .+||+|+|||+++... ..+.+|. ..|.++++.+|... ++..+..
T Consensus 82 p~~~~~~~~~~~~~~~l~~~l~~l~-~~yD~VIiD~p~~~~~--~~~~~l~------~ad~vliv~~~~~~--s~~~~~~ 150 (251)
T TIGR01969 82 PAGVSLEGLRKADPDKLEDVLKEII-DDTDFLLIDAPAGLER--DAVTALA------AADELLLVVNPEIS--SITDALK 150 (251)
T ss_pred eCCCCHHHHhhcCHHHHHHHHHHHH-hhCCEEEEeCCCccCH--HHHHHHH------hCCeEEEEECCCCc--hHHHHHH
Confidence 211110 01122334454443 4699999999988743 2222232 34678888877532 2222222
Q ss_pred HHHHHhhcccCCCCCCeeEEEEcccCCcCccHHHHHHHHHHhCCcEE
Q psy11993 559 FNNAMADHSLSDNPHLIDGIVLTKFDTIDDKVGAAISMTYITGQPIV 605 (630)
Q Consensus 559 f~~~l~~~~~~~~~~~i~gIIlTK~D~~~~~~G~~ls~~~~~g~PI~ 605 (630)
+.+.+..+ ...+.++|+|+++....... .-.+....+.|+.
T Consensus 151 ~~~~~~~~-----~~~~~~vv~N~~~~~~~~~~-~~~l~~~~~~~~l 191 (251)
T TIGR01969 151 TKIVAEKL-----GTAILGVVLNRVTRDKTELG-REEIETILEVPVL 191 (251)
T ss_pred HHHHHHhc-----CCceEEEEEECCCchhhhhH-HHHHHHhhCCcEE
Confidence 22222211 23467999999986311221 1123333567764
No 428
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=98.55 E-value=6.7e-07 Score=92.54 Aligned_cols=178 Identities=20% Similarity=0.223 Sum_probs=91.9
Q ss_pred EEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHH-----HHHhhhc------ccCCCc--CCcchhh
Q psy11993 413 VMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLR-----THVRHLC------SLHPAA--KHGGREM 479 (630)
Q Consensus 413 vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr-----~~~~~l~------~~~~~~--~~tv~en 479 (630)
+|++.|--||||||++..||+.+...|.+|+++++|+... +...+. .....+. ....+. -.+..++
T Consensus 2 ~i~v~gKGGvGKTT~a~nLA~~la~~G~rvlliD~Dpq~~-~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~ 80 (267)
T cd02032 2 VLAVYGKGGIGKSTTSSNLSVALAKRGKKVLQIGCDPKHD-STFTLTGFLIPTVIDILEEVDFHYEELWPEDVIYEGYGG 80 (267)
T ss_pred EEEEecCCCCCHHHHHHHHHHHHHHCCCcEEEEecCCCCC-cceeccCCCCCCHHHHHHhccccccCCChhheEEECCCC
Confidence 5788899999999999999999999999999999997421 111110 0011110 000000 0112244
Q ss_pred hHhhhccCCC-----CH--HHHHHHHHHHh-hhcCCCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCcc
Q psy11993 480 VQLFEKGYGK-----DP--AEIAFRAISHA-RDMHIDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNE 551 (630)
Q Consensus 480 v~l~~~~~~~-----d~--~~ia~~ai~~a-~~~~~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~D 551 (630)
+.++..+... +. .......++.. ....||+|+|||+|+..... +..++. ..|.+|++.+|.. +
T Consensus 81 l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~vIIDt~g~~~~~~-~~~al~------~aD~vlip~~p~~--~ 151 (267)
T cd02032 81 VDCVEAGGPPAGAGCGGYVVGETVKLLKELNLFEEYDVILFDVLGDVVCGG-FAAPLN------YADYALIVTDNDF--D 151 (267)
T ss_pred cEEEEcCCCCCCccccchHHHHHHHHHHHccccccCCEEEEeCCCCccccc-chhhhh------hcCEEEEEecCCc--c
Confidence 5544221111 00 01111122221 13369999999988764321 112222 3477887877742 2
Q ss_pred HHHHHHHHHHHHhhcccCCCCCCeeEEEEcccCCcCccHHHHHHHHHHhCCcEE
Q psy11993 552 AVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTIDDKVGAAISMTYITGQPIV 605 (630)
Q Consensus 552 av~ql~~f~~~l~~~~~~~~~~~i~gIIlTK~D~~~~~~G~~ls~~~~~g~PI~ 605 (630)
++.-+..+.+.+...... ....+.++|+|+++.. . .+-.+....+.|+.
T Consensus 152 ~l~~~~~~~~~i~~~~~~-~~l~~~giV~Nr~~~~-~---~i~~~~~~~~~~vl 200 (267)
T cd02032 152 SIFAANRIAAAVREKAKT-YKVRLAGLIANRTDKT-D---LIDKFVEAVGMPVL 200 (267)
T ss_pred cHHHHHHHHHHHHHHhhc-cCCceEEEEEeCCCHH-H---HHHHHHHhCCCCEE
Confidence 333333333333322111 1234678999999863 2 22334445676653
No 429
>cd02035 ArsA ArsA ATPase functionas as an efflux pump located on the inner membrane of the cell. This ATP-driven oxyanion pump catalyzes the extrusion of arsenite, antimonite and arsenate. Maintenance of a low intracellular concentration of oxyanion produces resistance to the toxic agents. The pump is composed of two subunits, the catalytic ArsA subunit and the membrane subunit ArsB, which are encoded by arsA and arsB genes respectively. Arsenic efflux in bacteria is catalyzed by either ArsB alone or by ArsAB complex. The ATP-coupled pump, however, is more efficient. ArsA is composed of two homologous halves, A1 and A2, connected by a short linker sequence.
Probab=98.55 E-value=2e-06 Score=86.54 Aligned_cols=162 Identities=19% Similarity=0.177 Sum_probs=88.1
Q ss_pred EEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCc-------cHHHHH---------HHHHhhhcccCCCcCCcc
Q psy11993 413 VMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRA-------GAVEQL---------RTHVRHLCSLHPAAKHGG 476 (630)
Q Consensus 413 vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~-------ga~eQL---------r~~~~~l~~~~~~~~~tv 476 (630)
++++.|..|+||||+.+.+|.++...+.+|+++++|+.+. +....+ +.+...+...........
T Consensus 1 ~~~~~g~~g~Gkt~~~~~la~~~a~~g~~~~l~~~d~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (217)
T cd02035 1 VIFFTGKGGVGKTTIAAATAVRLAEEGKKVLLVSTDPAHNLSDKGLPNLSDAFIVEDPEIAPNLYREEVDATRRVERAWG 80 (217)
T ss_pred CEEEeCCCCchHHHHHHHHHHHHHHCCCcEEEEECCCCcccccccCCCchhhhccCChHHHHHHHHHHHHHHHHhhhccc
Confidence 4678899999999999999999999999999999999762 211111 111111110000000000
Q ss_pred hhhhHhhh-ccCCCCHHHH--HHHHHHHhhhcCCCeeeeccccchhchHHHHHHHHhhhhhcCC--CeEEEEeccccCcc
Q psy11993 477 REMVQLFE-KGYGKDPAEI--AFRAISHARDMHIDVVLIDTAGRMQDNEPLMRALAKLVKVNQP--DLLLFVGEALVGNE 551 (630)
Q Consensus 477 ~env~l~~-~~~~~d~~~i--a~~ai~~a~~~~~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~P--d~VLlV~E~~~g~D 551 (630)
.++..+.. .....++.+. ..+.++.+....||+|++||++....-..++.+.. ..+ +.+++|..|.. .
T Consensus 81 ~~~~~~~~~~~~~p~~~ell~~~~l~~~l~~~~yD~IIiD~pp~~~~~~~l~~~~l-----~~~~~~~vllV~~p~~--~ 153 (217)
T cd02035 81 GEGGLMLELAAALPGIEELASLLAVFREFSEGLYDVIVFDTAPTGHTLRLLVRELL-----TDPERTSFRLVTLPEK--L 153 (217)
T ss_pred chhhhHHhHhccCCCHHHHHHHHHHHHHHhcCCCCEEEECCCCchHHHHHHHHHHc-----cCCCceEEEEEeCCCc--c
Confidence 01111111 1112233332 23344444544499999999986443222222222 232 56777887753 2
Q ss_pred HHHHHHHHHHHHhhcccCCCCCCeeEEEEcccCCc
Q psy11993 552 AVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTI 586 (630)
Q Consensus 552 av~ql~~f~~~l~~~~~~~~~~~i~gIIlTK~D~~ 586 (630)
....+..+.+.++.+ ...+.++|+|++...
T Consensus 154 s~~~~~~~l~~l~~~-----~~~~~glVlN~~~~~ 183 (217)
T cd02035 154 PLYETERAITELALY-----GIPVDAVVVNRVLPA 183 (217)
T ss_pred HHHHHHHHHHHHHHC-----CCCCCEEEEeCCcCc
Confidence 344444544445433 134679999998653
No 430
>cd02033 BchX Chlorophyllide reductase converts chlorophylls into bacteriochlorophylls by reducing the chlorin B-ring. This family contains the X subunit of this three-subunit enzyme. Sequence and structure similarity between bchX, protochlorophyllide reductase L subunit (bchL and chlL) and nitrogenase Fe protein (nifH gene) suggest their functional similarity. Members of the BchX family serve as the unique electron donors to their respective catalytic subunits (bchN-bchB, bchY-bchZ and nitrogenase component 1). Mechanistically, they hydrolyze ATP and transfer electrons through a Fe4-S4 cluster.
Probab=98.55 E-value=9e-07 Score=94.61 Aligned_cols=181 Identities=21% Similarity=0.288 Sum_probs=96.2
Q ss_pred CCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHH--Hhhhcc---c-CCCcCCcc------h
Q psy11993 410 RPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTH--VRHLCS---L-HPAAKHGG------R 477 (630)
Q Consensus 410 ~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~--~~~l~~---~-~~~~~~tv------~ 477 (630)
+.++|+|+|..|+||||++..||.++...+.+|++++||+++......+... -..+.. . .......+ .
T Consensus 30 ~~~ii~v~gkgG~GKSt~a~nLa~~la~~g~rVllid~D~~~~~~~~~~g~~~~~~i~d~~~~~~l~~~~~~~~dv~~~~ 109 (329)
T cd02033 30 KTQIIAIYGKGGIGKSFTLANLSYMMAQQGKRVLLIGCDPKSDTTSLLFGGKACPTIIETSAKKKLAGEEVQIGDVCFKR 109 (329)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEeeecccccchhccccCCCcccccccccccCcccceeeceEEEe
Confidence 3489999999999999999999999999999999999999764322111100 000000 0 00000000 1
Q ss_pred hhhHhhhc-------cCCCCHHHHHHHHHHHhh--hcCCCeeeeccccchh---chHHHHHHHHhhhhhcCCCeEEEEec
Q psy11993 478 EMVQLFEK-------GYGKDPAEIAFRAISHAR--DMHIDVVLIDTAGRMQ---DNEPLMRALAKLVKVNQPDLLLFVGE 545 (630)
Q Consensus 478 env~l~~~-------~~~~d~~~ia~~ai~~a~--~~~~D~vlIDTaGr~~---~~~~L~~aL~kl~~~~~Pd~VLlV~E 545 (630)
.++.+.+. +..........+.++.+. ..++|++++|+.|... ....+++.++ +.+++|..
T Consensus 110 ~gv~~~~~g~p~~~~G~~~~~~i~~~~~l~~l~~~~w~~DyVliD~~gdv~~ggf~l~i~~~~a--------d~VIVVt~ 181 (329)
T cd02033 110 DGVFAMELGGPEVGRGCGGRGIIHGFELLEKLGFHDWDFDYVLLDFLGDVVCGGFGLPIARDMA--------QKVIVVGS 181 (329)
T ss_pred CCEEEecCCCCeecccccchHHHHHHHHHHHccCccccCCEEEEecCCcceeccccchhhhcCC--------ceEEEeCC
Confidence 12222111 111111111223444331 2368999999988654 1233333332 56777776
Q ss_pred cccC-ccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcccCCcCccHHHHHHHHHHhCCcEE
Q psy11993 546 ALVG-NEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTIDDKVGAAISMTYITGQPIV 605 (630)
Q Consensus 546 ~~~g-~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK~D~~~~~~G~~ls~~~~~g~PI~ 605 (630)
+... ......+.+..+.++.+ ..+..+.|+|+||.|.. +.+-.++...+.|+.
T Consensus 182 pe~~si~~A~~v~kai~~~~~l---g~~~~i~GlViNr~d~~----~~ie~~ae~lgi~vL 235 (329)
T cd02033 182 NDLQSLYVANNVCNAVEYFRKL---GGNVGVAGMVINKDDGT----GEAQAFAAHAGIPIL 235 (329)
T ss_pred chHHHHHHHHHHHHHHHHHHHh---CCCCCceEEEEeCcCCc----chHHHHHHHhCCCEE
Confidence 6332 21112222222222221 12346789999999863 235566777888874
No 431
>PRK10818 cell division inhibitor MinD; Provisional
Probab=98.55 E-value=2.2e-06 Score=88.74 Aligned_cols=182 Identities=16% Similarity=0.176 Sum_probs=95.1
Q ss_pred eEEEEEc-cCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHH-------HHHhhhcccCCCc----CCcchhh
Q psy11993 412 FVMAFCG-VNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLR-------THVRHLCSLHPAA----KHGGREM 479 (630)
Q Consensus 412 ~vi~lvG-pNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr-------~~~~~l~~~~~~~----~~tv~en 479 (630)
++|+|++ --||||||++..||+.+...+.+|+++++|....+..-.+. .+...+.....+. .....+|
T Consensus 3 kviav~s~KGGvGKTt~a~nlA~~la~~g~~vllvD~D~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (270)
T PRK10818 3 RIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFDIGLRNLDLIMGCERRVVYDFVNVIQGDATLNQALIKDKRTEN 82 (270)
T ss_pred eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEEECCCCCCChhhhhCCCcccccCHHHHhcCCCcHHHhccccCCcCC
Confidence 6788886 55899999999999999988999999999985333211110 0000000000000 0011234
Q ss_pred hHhhhccCCCCHH----HHHHHHHHHhhhcCCCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCccHHHH
Q psy11993 480 VQLFEKGYGKDPA----EIAFRAISHARDMHIDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQ 555 (630)
Q Consensus 480 v~l~~~~~~~d~~----~ia~~ai~~a~~~~~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~Dav~q 555 (630)
+.++......+.. ....+.++.+....||+|++|+++++.... ..+|. ..|.++++.+|.. .++.-
T Consensus 83 ~~~lp~~~~~~~~~~~~~~~~~~l~~l~~~~yd~viiD~p~~~~~~~--~~~l~------~ad~vivv~~p~~--~sl~~ 152 (270)
T PRK10818 83 LYILPASQTRDKDALTREGVAKVLDDLKAMDFEFIVCDSPAGIETGA--LMALY------FADEAIITTNPEV--SSVRD 152 (270)
T ss_pred EEEecCCCCcchhhhCHHHHHHHHHHHhhcCCCEEEEeCCCCccHHH--HHHHH------hCCeEEEEcCCCc--hHHHh
Confidence 4333322111111 112345554544479999999998875322 22232 3478888888753 23333
Q ss_pred HHHHHHHHhhcccCC-C-CCCe-eEEEEcccCCcCccH-H---HHHHHHHHhCCcE
Q psy11993 556 LVKFNNAMADHSLSD-N-PHLI-DGIVLTKFDTIDDKV-G---AAISMTYITGQPI 604 (630)
Q Consensus 556 l~~f~~~l~~~~~~~-~-~~~i-~gIIlTK~D~~~~~~-G---~~ls~~~~~g~PI 604 (630)
+..+.+.+..+.... + ...+ .++|+|+++.. ... + .+-.+....|.|+
T Consensus 153 ~~~~l~~i~~~~~~~~~~~~~~~~~vv~n~~~~~-~~~~~~~~~~~~~~~~~g~~~ 207 (270)
T PRK10818 153 SDRILGILASKSRRAENGEEPIKEHLLLTRYNPG-RVSRGDMLSMEDVLEILRIKL 207 (270)
T ss_pred HHHHHHHHHHhhccccccccccceEEEEeccCHh-hhhhcccccHHHHHHHhCCcE
Confidence 344444443221110 0 1122 47899999863 211 1 1233455567664
No 432
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=98.54 E-value=7.9e-08 Score=97.84 Aligned_cols=86 Identities=13% Similarity=-0.006 Sum_probs=52.8
Q ss_pred eeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcccCCcCcc
Q psy11993 510 VLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTIDDK 589 (630)
Q Consensus 510 vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK~D~~~~~ 589 (630)
-.-..||+++++..++++|+.. ..+|..++++|||+.++|..... .+.+.+.++.. +.+.++.|+.++
T Consensus 155 ~~~~lS~G~~~r~~la~~l~~~--~~~~~~illlDEp~~~ld~~~~~-~~~~~l~~~~~-----~~~ii~~~h~~~---- 222 (243)
T cd03272 155 EMQQLSGGQKSLVALALIFAIQ--KCDPAPFYLFDEIDAALDAQYRT-AVANMIKELSD-----GAQFITTTFRPE---- 222 (243)
T ss_pred cccccCHHHHHHHHHHHHHHHh--ccCCCCEEEEECCccCCCHHHHH-HHHHHHHHHhC-----CCEEEEEecCHH----
Confidence 3556799999999999998621 02333677799999999987654 44455655432 334455554322
Q ss_pred HHHHHHHHHHhCCcEEEEecCCCCc
Q psy11993 590 VGAAISMTYITGQPIVFVGTGQTYT 614 (630)
Q Consensus 590 ~G~~ls~~~~~g~PI~fvg~Gq~v~ 614 (630)
+..+ --.|..+.+-|.+.
T Consensus 223 ---~~~~----~d~i~~l~~~~~~~ 240 (243)
T cd03272 223 ---LLEV----ADKFYGVKFRNKVS 240 (243)
T ss_pred ---HHhh----CCEEEEEEEECCEE
Confidence 2222 23566777666553
No 433
>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....
Probab=98.54 E-value=5.9e-07 Score=87.44 Aligned_cols=156 Identities=19% Similarity=0.141 Sum_probs=87.2
Q ss_pred EEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccCC--CcCCcchhhhHhhhccCCCCHHH
Q psy11993 416 FCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHP--AAKHGGREMVQLFEKGYGKDPAE 493 (630)
Q Consensus 416 lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~--~~~~tv~env~l~~~~~~~d~~~ 493 (630)
.-+--|+||||++..||..+...+.+|+++++|....... .+......+..... ...+...+...++....+ ....
T Consensus 4 ~~~kGG~GKTt~a~~la~~la~~g~~VlliD~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 81 (195)
T PF01656_consen 4 TSGKGGVGKTTIAANLAQALARKGKKVLLIDLDPQAPNLS-ILFGVYDILREGLENANAILKNFESQDIYQGEEY-LDPE 81 (195)
T ss_dssp EESSTTSSHHHHHHHHHHHHHHTTS-EEEEEESTTSHHHH-HHTTCHHHHTTSSHGHHCHHESCCHHHHHHHCHC-HHHH
T ss_pred EcCCCCccHHHHHHHHHhccccccccccccccCcccccHH-HHhcchhhccccceehhhhhhccchhhhhhhhhh-hHHH
Confidence 3356699999999999999999999999999998654322 21100000110000 000000000111110001 2233
Q ss_pred HHHHHHHHhhhcCCCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCccHHHHHHHHHHHHhhcccCCCCC
Q psy11993 494 IAFRAISHARDMHIDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQLVKFNNAMADHSLSDNPH 573 (630)
Q Consensus 494 ia~~ai~~a~~~~~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~ 573 (630)
...++++.+....||+|+|||+++.... ....+ ..+|.++++.+|.. ..+..+..+.+.+.+... ..
T Consensus 82 ~l~~~l~~l~~~~yD~iiiD~~~~~~~~--~~~~l------~~ad~viv~~~~~~--~~i~~~~~~~~~l~~~~~---~~ 148 (195)
T PF01656_consen 82 LLREILESLIKSDYDYIIIDTPPGLSDP--VRNAL------AAADYVIVPIEPDP--SSIEGAERLIELLKRLGK---KL 148 (195)
T ss_dssp HHHHHHHHHHHTTSSEEEEEECSSSSHH--HHHHH------HTSSEEEEEEESSH--HHHHHHHHHHHHHHHHTH---TE
T ss_pred HHHHHHHHhhhccccceeecccccccHH--HHHHH------HhCceeeeecCCcH--HHHHHHHHHHHHHHHhcc---cc
Confidence 3555666655545999999999877543 22223 35678888888754 235555555555554431 12
Q ss_pred CeeEEEEcccCCc
Q psy11993 574 LIDGIVLTKFDTI 586 (630)
Q Consensus 574 ~i~gIIlTK~D~~ 586 (630)
.+.++|+|+++..
T Consensus 149 ~~~~vv~N~v~~~ 161 (195)
T PF01656_consen 149 KIIGVVINRVDPG 161 (195)
T ss_dssp EEEEEEEEEETSC
T ss_pred ceEEEEEeeeCCC
Confidence 4779999999764
No 434
>CHL00175 minD septum-site determining protein; Validated
Probab=98.53 E-value=1.4e-06 Score=90.75 Aligned_cols=160 Identities=12% Similarity=0.100 Sum_probs=88.2
Q ss_pred CeEEEEEc-cCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHH-------HHhhhcccCCCc----CCcchh
Q psy11993 411 PFVMAFCG-VNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRT-------HVRHLCSLHPAA----KHGGRE 478 (630)
Q Consensus 411 p~vi~lvG-pNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~-------~~~~l~~~~~~~----~~tv~e 478 (630)
..+|+|+| --||||||++..||..+...|.+|+++++|.........+.. ....+.....+. ..+..+
T Consensus 15 ~~vi~v~s~KGGvGKTt~a~nLA~~La~~g~~vlliD~D~~~~~l~~~lg~~~~~~~~~~d~l~~~~~l~~~~~~~~~~~ 94 (281)
T CHL00175 15 SRIIVITSGKGGVGKTTTTANLGMSIARLGYRVALIDADIGLRNLDLLLGLENRVLYTAMDVLEGECRLDQALIRDKRWK 94 (281)
T ss_pred ceEEEEEcCCCCCcHHHHHHHHHHHHHhCCCeEEEEeCCCCCCChhhhcCCCCCCCCCHHHHHcCCCChhhheeecCCCC
Confidence 47888885 779999999999999999989999999999964332211110 001111000000 001112
Q ss_pred hhHhhhccCC-----CCHHHHHHHHHHHhhhcCCCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCccHH
Q psy11993 479 MVQLFEKGYG-----KDPAEIAFRAISHARDMHIDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAV 553 (630)
Q Consensus 479 nv~l~~~~~~-----~d~~~ia~~ai~~a~~~~~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~Dav 553 (630)
++.++..... ... ....+.++.+....||+|+|||+++... ....+|. ..|.+++|.+|... ++
T Consensus 95 ~l~~l~~~~~~~~~~~~~-~~l~~~l~~l~~~~yD~VIiDtpp~~~~--~~~~~l~------~aD~viiV~~p~~~--si 163 (281)
T CHL00175 95 NLSLLAISKNRQRYNVTR-KNMNMLVDSLKNRGYDYILIDCPAGIDV--GFINAIA------PAQEAIVVTTPEIT--AI 163 (281)
T ss_pred CeEEEeCCCchhhccCCH-HHHHHHHHHHHhCCCCEEEEeCCCCCCH--HHHHHHH------hcCeeEEEcCCChH--HH
Confidence 3333322111 111 1234455555443799999999988642 3333333 23567778777432 33
Q ss_pred HHHHHHHHHHhhcccCCCCCCeeEEEEcccCCc
Q psy11993 554 DQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTI 586 (630)
Q Consensus 554 ~ql~~f~~~l~~~~~~~~~~~i~gIIlTK~D~~ 586 (630)
..+..+.+.+.... ...-++|+++++..
T Consensus 164 ~~~~~~~~~l~~~~-----~~~~~lvvN~~~~~ 191 (281)
T CHL00175 164 RDADRVAGLLEANG-----IYNVKLLVNRVRPD 191 (281)
T ss_pred HHHHHHHHHHHHcC-----CCceEEEEeccChh
Confidence 33344444443321 12347899998753
No 435
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=98.52 E-value=7.3e-07 Score=99.12 Aligned_cols=208 Identities=13% Similarity=0.142 Sum_probs=139.4
Q ss_pred hhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccCC----CcC
Q psy11993 398 ILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHP----AAK 473 (630)
Q Consensus 398 iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~----~~~ 473 (630)
.+++++|.+..| ++++|.|.-|+|+|-++..|.++....+|+|.+.+...-.....+.++.-..+++.+-. +..
T Consensus 274 ~~~dvSf~vr~G--EIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G~~v~~~sp~~Ai~~Gi~~v~EDRk~~Gl~l~ 351 (500)
T COG1129 274 KVRDVSFTVRAG--EILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIKAGIAYVPEDRKSEGLVLD 351 (500)
T ss_pred ceeCceeEEeCC--cEEEEeccccCCHHHHHHHHhCCCcCCCceEEECCEEccCCCHHHHHHcCCEeCCcccccCcCcCC
Confidence 367899999999 99999999999999999999998888899999999876444444445544444443222 556
Q ss_pred CcchhhhHhhh-ccC----CCCHHH---HHHHHHHHhh--hcCCCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEE
Q psy11993 474 HGGREMVQLFE-KGY----GKDPAE---IAFRAISHAR--DMHIDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFV 543 (630)
Q Consensus 474 ~tv~env~l~~-~~~----~~d~~~---ia~~ai~~a~--~~~~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV 543 (630)
+++.+|+.+.. ..+ -.+... .+.+.+..+. ..+.+..+-.+||+.||+..++++|. .+| .+|++
T Consensus 352 ~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v~~LSGGNQQKVvlarwL~-----~~p-~vLil 425 (500)
T COG1129 352 MSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPIGTLSGGNQQKVVLARWLA-----TDP-KVLIL 425 (500)
T ss_pred CcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccchhhcCCchhhhhHHHHHHHh-----cCC-CEEEE
Confidence 88999987651 111 123222 2333333332 22334456677999999999999999 888 56779
Q ss_pred eccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEc-ccCCcCccHHHHHHHHHHhCCcEEEEecCCCCcc--CCCCC
Q psy11993 544 GEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLT-KFDTIDDKVGAAISMTYITGQPIVFVGTGQTYTD--LKSLN 620 (630)
Q Consensus 544 ~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlT-K~D~~~~~~G~~ls~~~~~g~PI~fvg~Gq~v~D--L~~~~ 620 (630)
||||-|-|.=..... .+.+++++.. +...+++| .++| ++.++. .|.-...|+-+.. -..++
T Consensus 426 DEPTRGIDVGAK~eI-y~li~~lA~~----G~ail~iSSElpE-------ll~~~D----RIlVm~~Gri~~e~~~~~~t 489 (500)
T COG1129 426 DEPTRGIDVGAKAEI-YRLIRELAAE----GKAILMISSELPE-------LLGLSD----RILVMREGRIVGELDREEAT 489 (500)
T ss_pred CCCCcCcccchHHHH-HHHHHHHHHC----CCEEEEEeCChHH-------HHhhCC----EEEEEECCEEEEEeccccCC
Confidence 999999986544333 3455555543 56656665 3443 455555 4766777776653 33377
Q ss_pred HHHHHHHhh
Q psy11993 621 AKAVVNALM 629 (630)
Q Consensus 621 ~~~~v~~Ll 629 (630)
.+.+..+.+
T Consensus 490 ee~im~~a~ 498 (500)
T COG1129 490 EEAIMAAAF 498 (500)
T ss_pred HHHHHHHhh
Confidence 777776653
No 436
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=98.50 E-value=1.2e-06 Score=103.77 Aligned_cols=165 Identities=19% Similarity=0.212 Sum_probs=94.1
Q ss_pred ccCCCeEEEEEccC-CCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHH-----HHhhhcccCCC---cCCcch
Q psy11993 407 KQGRPFVMAFCGVN-GVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRT-----HVRHLCSLHPA---AKHGGR 477 (630)
Q Consensus 407 ~~g~p~vi~lvGpN-GvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~-----~~~~l~~~~~~---~~~tv~ 477 (630)
...++.+|+|+++- |+||||++..||..+...|.+|+++++|..+......+.. +...+.....+ ...+..
T Consensus 542 ~~~~~kvi~vts~~~G~GKTt~a~nLA~~lA~~g~rvLlID~D~~~~~l~~~~~~~~~~gl~~~l~~~~~~~~~i~~~~~ 621 (754)
T TIGR01005 542 SVAEPEVVETQRPRPVLGKSDIEANAAALIASGGKRALLIDADGRKAALSQILVAREVSGLLDLLAGLRSLLLDLTASGA 621 (754)
T ss_pred cCCCceEEEeecCCCCCChhHHHHHHHHHHHhCCCeEEEEeCCCCchhHHHHhCCcccCChHHHHcCCccHHHHhccCCC
Confidence 34456899999665 8899999999999999899999999999976544322211 01111000000 011223
Q ss_pred hhhHhhhccCC-CCHHHH-----HHHHHHHhhhcCCCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCcc
Q psy11993 478 EMVQLFEKGYG-KDPAEI-----AFRAISHARDMHIDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNE 551 (630)
Q Consensus 478 env~l~~~~~~-~d~~~i-----a~~ai~~a~~~~~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~D 551 (630)
+|+.++..+.. .++.+. ....+..++ ..||+|+|||++...... +..|. ...|.+++|..+ +..
T Consensus 622 ~~l~~l~~g~~~~~~~~ll~~~~~~~~l~~l~-~~yD~IiID~pp~~~~~d--~~~l~-----~~~D~vl~v~~~--~~~ 691 (754)
T TIGR01005 622 ASLPMLDSGLFPHGITELLASPAMFSLVIHAR-LYSDCVVVDVGTADPVRD--MRAAA-----RLAIIMLLVTAY--DRV 691 (754)
T ss_pred CCeeEecCCCCCCCHHHHhccHHHHHHHHHHH-hhCCEEEEcCCCcchhHH--HHHhh-----hhCCeEEEEEEe--Cce
Confidence 45555443321 122221 233444444 469999999999875322 22333 223667777654 333
Q ss_pred HHHHHHHHHHHHhhcccCCCCCCeeEEEEcccCCc
Q psy11993 552 AVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTI 586 (630)
Q Consensus 552 av~ql~~f~~~l~~~~~~~~~~~i~gIIlTK~D~~ 586 (630)
....+....+.+..+ ...+.|+|+|++|..
T Consensus 692 ~~~~~~~~~~~l~~~-----~~~~~GvvlN~~~~~ 721 (754)
T TIGR01005 692 VVECGRADAQGISRL-----NGEVTGVFLNMLDPN 721 (754)
T ss_pred eHHHHHHHHHHHHhc-----CCceEEEEecCCChh
Confidence 334443333344322 135789999999964
No 437
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=98.50 E-value=2.8e-07 Score=104.35 Aligned_cols=148 Identities=16% Similarity=0.106 Sum_probs=94.6
Q ss_pred cCCCcchhhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEe-ecccCCccHHHHHHHHHhhhccc
Q psy11993 390 LSPKRRVDILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIA-ACDTFRAGAVEQLRTHVRHLCSL 468 (630)
Q Consensus 390 l~~~~~~~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~-~~Dt~R~ga~eQLr~~~~~l~~~ 468 (630)
.+|... ..|++.++.+++| +-+.|.|++||||||+++.||++-.--.|+|.+- ++++ -.+++.
T Consensus 401 ~~p~~~-~ll~~l~~~v~~G--~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~~~~~-------------lflpQ~ 464 (604)
T COG4178 401 RTPDGQ-TLLSELNFEVRPG--ERLLITGESGAGKTSLLRALAGLWPWGSGRISMPADSAL-------------LFLPQR 464 (604)
T ss_pred ECCCCC-eeeccceeeeCCC--CEEEEECCCCCCHHHHHHHHhccCccCCCceecCCCCce-------------EEecCC
Confidence 344433 5788899999999 9999999999999999999999775555666554 1222 123444
Q ss_pred CCCcCCcchhhhHhhhccCCCCHHHHHHHHHHHhhh----------cCCCeeeeccccchhchHHHHHHHHhhhhhcCCC
Q psy11993 469 HPAAKHGGREMVQLFEKGYGKDPAEIAFRAISHARD----------MHIDVVLIDTAGRMQDNEPLMRALAKLVKVNQPD 538 (630)
Q Consensus 469 ~~~~~~tv~env~l~~~~~~~d~~~ia~~ai~~a~~----------~~~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd 538 (630)
++.+..|.++-|.+.......+.++. .+++..... ...|.+ .++++||+...+|.|. .+|
T Consensus 465 PY~p~GtLre~l~YP~~~~~~~d~~l-~~vL~~vgL~~L~~rl~~~~~W~~v---LS~GEqQRlafARilL-----~kP- 534 (604)
T COG4178 465 PYLPQGTLREALCYPNAAPDFSDAEL-VAVLHKVGLGDLAERLDEEDRWDRV---LSGGEQQRLAFARLLL-----HKP- 534 (604)
T ss_pred CCCCCccHHHHHhCCCCCCCCChHHH-HHHHHHcCcHHHHHHHhccCcHhhh---cChhHHHHHHHHHHHH-----cCC-
Confidence 44444555555543322211222222 223222211 112222 4899999999999998 899
Q ss_pred eEEEEeccccCccHHHHHHHHHHHHh
Q psy11993 539 LLLFVGEALVGNEAVDQLVKFNNAMA 564 (630)
Q Consensus 539 ~VLlV~E~~~g~Dav~ql~~f~~~l~ 564 (630)
.++++||+|.++|.-.+... .+.++
T Consensus 535 ~~v~LDEATsALDe~~e~~l-~q~l~ 559 (604)
T COG4178 535 KWVFLDEATSALDEETEDRL-YQLLK 559 (604)
T ss_pred CEEEEecchhccChHHHHHH-HHHHH
Confidence 56669999999998776544 34454
No 438
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=98.49 E-value=1.7e-06 Score=102.04 Aligned_cols=163 Identities=16% Similarity=0.191 Sum_probs=93.6
Q ss_pred ccCCCeEEEEEccC-CCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHH-----HHhhhcccCCCc---CCcch
Q psy11993 407 KQGRPFVMAFCGVN-GVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRT-----HVRHLCSLHPAA---KHGGR 477 (630)
Q Consensus 407 ~~g~p~vi~lvGpN-GvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~-----~~~~l~~~~~~~---~~tv~ 477 (630)
...++.+|+|+|+. |+||||++..||..+...|.+|+++++|+.+......+.. +..++.....+. ..+..
T Consensus 527 ~~~~~kvI~vtS~~~g~GKTtva~nLA~~la~~G~rVLlID~D~r~~~l~~~~~~~~~~gl~~~l~~~~~~~~~i~~~~~ 606 (726)
T PRK09841 527 METENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFIDADLRRGYSHNLFTVSNEHGLSEYLAGKDELNKVIQHFGK 606 (726)
T ss_pred cCCCCeEEEEecCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCCCCcHHHHcCCCCCCCHHHHhCCCCCHHHheeccCC
Confidence 34456899999987 9999999999999999999999999999976544322210 111111110000 01122
Q ss_pred hhhHhhhccC-CCCHHHH-----HHHHHHHhhhcCCCeeeeccccchhc-hHHHHHHHHhhhhhcCCCeEEEEecc-ccC
Q psy11993 478 EMVQLFEKGY-GKDPAEI-----AFRAISHARDMHIDVVLIDTAGRMQD-NEPLMRALAKLVKVNQPDLLLFVGEA-LVG 549 (630)
Q Consensus 478 env~l~~~~~-~~d~~~i-----a~~ai~~a~~~~~D~vlIDTaGr~~~-~~~L~~aL~kl~~~~~Pd~VLlV~E~-~~g 549 (630)
+|+.++..+. ..++.+. ....+..++ ..||+|+||||+.... +..++..++ |.+++|..+ .+.
T Consensus 607 ~~l~vl~~g~~~~~p~ell~~~~~~~ll~~l~-~~yD~IIIDtPP~~~~~Da~~la~~a--------d~~llVvr~~~t~ 677 (726)
T PRK09841 607 GGFDVITRGQVPPNPSELLMRDRMRQLLEWAN-DHYDLVIVDTPPMLAVSDAAVVGRSV--------GTSLLVARFGLNT 677 (726)
T ss_pred CCEEEEeCCCCCCCHHHHhCcHHHHHHHHHHH-hcCCEEEEeCCCccccchHHHHHHhC--------CeEEEEEeCCCCC
Confidence 3455443322 1234332 234444444 4699999999988764 333333232 566666655 233
Q ss_pred ccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcccCCc
Q psy11993 550 NEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTI 586 (630)
Q Consensus 550 ~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK~D~~ 586 (630)
.+.+ ...-+.+.. ....+.|+|+|+++..
T Consensus 678 ~~~~---~~~~~~l~~-----~~~~~~G~VlN~~~~~ 706 (726)
T PRK09841 678 AKEV---SLSMQRLEQ-----AGVNIKGAILNGVIKR 706 (726)
T ss_pred HHHH---HHHHHHHHh-----CCCceEEEEEeCcccC
Confidence 2222 222222221 1345789999999864
No 439
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=98.49 E-value=1.7e-06 Score=89.17 Aligned_cols=40 Identities=33% Similarity=0.450 Sum_probs=36.7
Q ss_pred eEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCC
Q psy11993 412 FVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFR 451 (630)
Q Consensus 412 ~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R 451 (630)
.+|+|+|.-||||||++..||+.+...|.+|+++++|+..
T Consensus 2 ~~iav~~KGGvGKTT~~~nLA~~La~~G~kVlliD~Dpq~ 41 (270)
T cd02040 2 RQIAIYGKGGIGKSTTTQNLSAALAEMGKKVMIVGCDPKA 41 (270)
T ss_pred cEEEEEeCCcCCHHHHHHHHHHHHHhCCCeEEEEEcCCCC
Confidence 4788889999999999999999999989999999999964
No 440
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=98.48 E-value=2e-07 Score=92.89 Aligned_cols=34 Identities=26% Similarity=0.159 Sum_probs=27.6
Q ss_pred hhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHH
Q psy11993 398 ILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWL 435 (630)
Q Consensus 398 iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l 435 (630)
++.++++. .| ++++|+||||+||||+++.|++..
T Consensus 16 v~n~i~l~--~g--~~~~ltGpNg~GKSTllr~i~~~~ 49 (199)
T cd03283 16 VANDIDME--KK--NGILITGSNMSGKSTFLRTIGVNV 49 (199)
T ss_pred ecceEEEc--CC--cEEEEECCCCCChHHHHHHHHHHH
Confidence 44555544 46 899999999999999999999755
No 441
>PRK11519 tyrosine kinase; Provisional
Probab=98.47 E-value=2e-06 Score=101.20 Aligned_cols=163 Identities=21% Similarity=0.245 Sum_probs=95.3
Q ss_pred ccCCCeEEEEEcc-CCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHH-----HHhhhcccCCC---cCCcch
Q psy11993 407 KQGRPFVMAFCGV-NGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRT-----HVRHLCSLHPA---AKHGGR 477 (630)
Q Consensus 407 ~~g~p~vi~lvGp-NGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~-----~~~~l~~~~~~---~~~tv~ 477 (630)
...++.+|+|+++ .|+||||++..||..+...|.+|++++||..+......+.. ...++.....+ -..+..
T Consensus 522 ~~~~~kvi~vts~~~geGKTt~a~nLA~~la~~g~rvLlID~Dlr~~~~~~~~~~~~~~gl~~~l~~~~~l~~~i~~~~~ 601 (719)
T PRK11519 522 MQAQNNVLMMTGVSPSIGKTFVCANLAAVISQTNKRVLLIDCDMRKGYTHELLGTNNVNGLSDILIGQGDITTAAKPTSI 601 (719)
T ss_pred cCCCceEEEEECCCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCCCcHHHHhCCCCCCCHHHHhCCCCCHHHhecccCc
Confidence 3445589999995 59999999999999999999999999999976643322211 11111111110 011223
Q ss_pred hhhHhhhccCC-CCHHHH-----HHHHHHHhhhcCCCeeeeccccchhc-hHHHHHHHHhhhhhcCCCeEEEEecc-ccC
Q psy11993 478 EMVQLFEKGYG-KDPAEI-----AFRAISHARDMHIDVVLIDTAGRMQD-NEPLMRALAKLVKVNQPDLLLFVGEA-LVG 549 (630)
Q Consensus 478 env~l~~~~~~-~d~~~i-----a~~ai~~a~~~~~D~vlIDTaGr~~~-~~~L~~aL~kl~~~~~Pd~VLlV~E~-~~g 549 (630)
+|+.++..+.. .++.+. ....++.++ ..||+|+||||+.+.- +..++.. ..|.+++|..+ .+.
T Consensus 602 ~~l~~lp~g~~~~~~~ell~s~~~~~ll~~l~-~~yD~ViiDtpP~~~v~Da~~l~~--------~~d~~l~Vvr~~~t~ 672 (719)
T PRK11519 602 ANFDLIPRGQVPPNPSELLMSERFAELVNWAS-KNYDLVLIDTPPILAVTDAAIVGR--------HVGTTLMVARYAVNT 672 (719)
T ss_pred CCEEEEeCCCCCCCHHHHhhHHHHHHHHHHHH-hcCCEEEEeCCCcccchHHHHHHH--------HCCeEEEEEeCCCCC
Confidence 45555544332 344332 334454444 4699999999997753 3332222 23677777765 333
Q ss_pred ccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcccCCc
Q psy11993 550 NEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTI 586 (630)
Q Consensus 550 ~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK~D~~ 586 (630)
.+.+.. ..+.++. ....+.|+|+|+++..
T Consensus 673 ~~~~~~---~~~~l~~-----~~~~~~G~VlN~v~~~ 701 (719)
T PRK11519 673 LKEVET---SLSRFEQ-----NGIPVKGVILNSIFRR 701 (719)
T ss_pred HHHHHH---HHHHHHh-----CCCCeEEEEEeCCccC
Confidence 333322 2222221 1346899999999764
No 442
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=98.46 E-value=1.9e-06 Score=89.21 Aligned_cols=38 Identities=29% Similarity=0.468 Sum_probs=35.1
Q ss_pred EEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccC
Q psy11993 413 VMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTF 450 (630)
Q Consensus 413 vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~ 450 (630)
+|++.|--||||||++..||+.+...|.+|+++++|+.
T Consensus 2 ~i~~~gKGGVGKTT~~~nLA~~La~~g~rVLliD~D~q 39 (268)
T TIGR01281 2 ILAVYGKGGIGKSTTSSNLSVAFAKLGKRVLQIGCDPK 39 (268)
T ss_pred EEEEEcCCcCcHHHHHHHHHHHHHhCCCeEEEEecCcc
Confidence 47777999999999999999999999999999999985
No 443
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=98.45 E-value=4.2e-06 Score=80.37 Aligned_cols=144 Identities=18% Similarity=0.256 Sum_probs=82.3
Q ss_pred EEEE-ccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccCCCcCCcchhhhHhhhccCCCCHH
Q psy11993 414 MAFC-GVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHPAAKHGGREMVQLFEKGYGKDPA 492 (630)
Q Consensus 414 i~lv-GpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~~~~~tv~env~l~~~~~~~d~~ 492 (630)
|+|+ +.-|+||||++..||..+...|.+|+++++|++..... .+ ++..... . ..+
T Consensus 2 i~v~~~kgG~GKtt~a~~la~~l~~~g~~vllvD~D~~~~~~~-~~------~~~~~~~-~------~~~---------- 57 (179)
T cd02036 2 IVVTSGKGGVGKTTTTANLGTALAQLGYKVVLIDADLGLRNLD-LI------LGLENRV-V------YTL---------- 57 (179)
T ss_pred EEEeeCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCCCCCch-hh------ccccccC-C------cch----------
Confidence 3444 56799999999999999999999999999998643321 11 1100000 0 000
Q ss_pred HHHHHHHHHhhhcCCCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCccHHHHHHHHHHHHhhcccCCCC
Q psy11993 493 EIAFRAISHARDMHIDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQLVKFNNAMADHSLSDNP 572 (630)
Q Consensus 493 ~ia~~ai~~a~~~~~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~Dav~ql~~f~~~l~~~~~~~~~ 572 (630)
.+.+ .+ |+|+|||+++.... ...+|. ..|.++++.+|... .+..+..+.+.+... .
T Consensus 58 ---~~~~-----~~-d~viiD~p~~~~~~--~~~~l~------~ad~viiv~~~~~~--s~~~~~~~~~~~~~~-----~ 113 (179)
T cd02036 58 ---HDVL-----AG-DYILIDSPAGIERG--FITAIA------PADEALLVTTPEIS--SLRDADRVKGLLEAL-----G 113 (179)
T ss_pred ---hhcc-----cC-CEEEEECCCCCcHH--HHHHHH------hCCcEEEEeCCCcc--hHHHHHHHHHHHHHc-----C
Confidence 0111 01 99999999876432 222232 34678878877543 233333333333321 2
Q ss_pred CCeeEEEEcccCCcCccHHHHHH-HHHHhCCcEE
Q psy11993 573 HLIDGIVLTKFDTIDDKVGAAIS-MTYITGQPIV 605 (630)
Q Consensus 573 ~~i~gIIlTK~D~~~~~~G~~ls-~~~~~g~PI~ 605 (630)
....++|+|+++.........+. +...++.|+.
T Consensus 114 ~~~~~iv~N~~~~~~~~~~~~~~~~~~~~~~~v~ 147 (179)
T cd02036 114 IKVVGVIVNRVRPDMVEGGDMVEDIEEILGVPLL 147 (179)
T ss_pred CceEEEEEeCCcccccchhhHHHHHHHHhCCCEE
Confidence 34678999999875323333233 3444677764
No 444
>PRK13234 nifH nitrogenase reductase; Reviewed
Probab=98.44 E-value=1.3e-06 Score=92.27 Aligned_cols=41 Identities=34% Similarity=0.481 Sum_probs=37.6
Q ss_pred eEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCc
Q psy11993 412 FVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRA 452 (630)
Q Consensus 412 ~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ 452 (630)
++|+|.|.-||||||++..||..+...|.+|+++++|+...
T Consensus 5 ~~iai~~KGGvGKTt~~~nLa~~la~~g~kVLliD~D~q~~ 45 (295)
T PRK13234 5 RQIAFYGKGGIGKSTTSQNTLAALVEMGQKILIVGCDPKAD 45 (295)
T ss_pred eEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEEecccccc
Confidence 68888899999999999999999999999999999998543
No 445
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=98.44 E-value=9.5e-07 Score=87.86 Aligned_cols=137 Identities=15% Similarity=0.068 Sum_probs=69.8
Q ss_pred eEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccC-CCcCCcchhhhHhhhccCCCC
Q psy11993 412 FVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLH-PAAKHGGREMVQLFEKGYGKD 490 (630)
Q Consensus 412 ~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~-~~~~~tv~env~l~~~~~~~d 490 (630)
.+.+|+||||+||||++..|+..+... .. ..+|......+-.......... .+......+| ..+. .
T Consensus 22 gl~~i~G~NGsGKStll~ai~~~l~~~---~~----~~~r~~~~~~~i~~~~~~~~i~~~~~~~~~~~~-----~~~~-~ 88 (198)
T cd03276 22 RVNFIVGNNGSGKSAILTALTIGLGGK---AS----DTNRGSSLKDLIKDGESSAKITVTLKNQGLDAN-----PLCV-L 88 (198)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHhcCC---cc----cccccccHHHHhhCCCCeEEEEEEEEcCCccCC-----cCCH-H
Confidence 388999999999999999998655322 11 1112211112211111000000 0100001110 0000 1
Q ss_pred HHHHHHHHHHHhhhcCCCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCccHHHHHHHHHHHHhhc
Q psy11993 491 PAEIAFRAISHARDMHIDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQLVKFNNAMADH 566 (630)
Q Consensus 491 ~~~ia~~ai~~a~~~~~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~Dav~ql~~f~~~l~~~ 566 (630)
....+.+.+.. ....+..+-..|++++++..++++|+.. ...+| .++++|||+.|+|..... .+.+.+.++
T Consensus 89 ~~~~~~~~l~~--~~~~~~~~~~lS~G~k~r~~ia~al~~~-~~~~p-~illlDEP~~glD~~~~~-~~~~~l~~~ 159 (198)
T cd03276 89 SQDMARSFLTS--NKAAVRDVKTLSGGERSFSTVCLLLSLW-EVMES-PFRCLDEFDVFMDMVNRK-ISTDLLVKE 159 (198)
T ss_pred HHHHHHHHhcc--ccccCCcccccChhHHHHHHHHHHHHHh-cccCC-CEEEecCcccccCHHHHH-HHHHHHHHH
Confidence 11223333332 1223445677899999998888887411 12567 566699999999987653 344445444
No 446
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=98.43 E-value=8.2e-06 Score=82.22 Aligned_cols=172 Identities=22% Similarity=0.207 Sum_probs=101.2
Q ss_pred EEEEEccCCCChHHHHHHHHHHHH-hcCCeEEEeecccCCccHHHHH----------------HHHHhhhcccCC--CcC
Q psy11993 413 VMAFCGVNGVGKSTNLAKICFWLI-ENNLNVLIAACDTFRAGAVEQL----------------RTHVRHLCSLHP--AAK 473 (630)
Q Consensus 413 vi~lvGpNGvGKTTllakLA~~l~-~~ggkVlI~~~Dt~R~ga~eQL----------------r~~~~~l~~~~~--~~~ 473 (630)
.|+|+|--|+||||+.+.|+..+. ..+.+|+++++|. ..+-.++| +......+...+ .+.
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l~~~~~~~VLvVDaDp-d~nL~~~LGve~~~~~lg~~~e~~~k~~~a~~~~~~~~~fk 80 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRLLSKGGYNVLVVDADP-DSNLPEALGVEEPMKYLGGKRELLKKRTGAEPGGPPGEMFK 80 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHHHhcCCceEEEEeCCC-CCChHHhcCCCCCCcccccHHHHHHHHhccCCCCCcccccc
Confidence 689999999999999999775554 4558999999997 44433332 222221111000 000
Q ss_pred ------------CcchhhhHhhhccC----C---CCH-HHHHHHHHHHhhhcCCCeeeecc-ccchhchHHHHHHHHhhh
Q psy11993 474 ------------HGGREMVQLFEKGY----G---KDP-AEIAFRAISHARDMHIDVVLIDT-AGRMQDNEPLMRALAKLV 532 (630)
Q Consensus 474 ------------~tv~env~l~~~~~----~---~d~-~~ia~~ai~~a~~~~~D~vlIDT-aGr~~~~~~L~~aL~kl~ 532 (630)
..-..++.+...+. | .-| ....++.++.+....+|+|++|| ||..|..... .
T Consensus 81 ~~~~~~di~~e~~~e~~~~~LLvmGkie~~GeGC~Cp~~allR~~l~~l~~~~~e~VivDtEAGiEHfgRg~----~--- 153 (255)
T COG3640 81 ENPLVSDLPDEYLVENGDIDLLVMGKIEEGGEGCACPMNALLRRLLRHLILNRYEVVIVDTEAGIEHFGRGT----I--- 153 (255)
T ss_pred cCcchhhhhHHHhhhcCCccEEEeccccCCCCcccchHHHHHHHHHHHHhcccCcEEEEecccchhhhcccc----c---
Confidence 00011122211111 0 112 34467788888888899999999 8877743332 2
Q ss_pred hhcCCCeEEEEeccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcccCCcCccHHHHHHHHHHhCCcE
Q psy11993 533 KVNQPDLLLFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTIDDKVGAAISMTYITGQPI 604 (630)
Q Consensus 533 ~~~~Pd~VLlV~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK~D~~~~~~G~~ls~~~~~g~PI 604 (630)
-.-|.+|+|.||+. .++..++++.+...++- ..--.+|++|+|+. ...+...+...+.+|
T Consensus 154 --~~vD~vivVvDpS~--~sl~taeri~~L~~elg-----~k~i~~V~NKv~e~---e~~~~~~~~~~~~~v 213 (255)
T COG3640 154 --EGVDLVIVVVDPSY--KSLRTAERIKELAEELG-----IKRIFVVLNKVDEE---EELLRELAEELGLEV 213 (255)
T ss_pred --cCCCEEEEEeCCcH--HHHHHHHHHHHHHHHhC-----CceEEEEEeeccch---hHHHHhhhhccCCeE
Confidence 35678999999964 35555555554433221 23447999999973 333444555566655
No 447
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=98.42 E-value=1.4e-07 Score=94.67 Aligned_cols=69 Identities=14% Similarity=-0.048 Sum_probs=47.2
Q ss_pred CeeeeccccchhchHHHHHHHHhhhhh-----cCCCeEEEEeccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 508 DVVLIDTAGRMQDNEPLMRALAKLVKV-----NQPDLLLFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 508 D~vlIDTaGr~~~~~~L~~aL~kl~~~-----~~Pd~VLlV~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
+..+...||+++++..++++|+.-..+ .+| .++++|||+.++|..... .+.+.+.++.. .+.+.+++|+
T Consensus 118 ~~~~~~lS~G~~~r~~la~al~~~p~~~~~~~~~~-~~lllDEp~~~lD~~~~~-~~~~~l~~~~~----~~~tii~itH 191 (213)
T cd03279 118 ARPVSTLSGGETFLASLSLALALSEVLQNRGGARL-EALFIDEGFGTLDPEALE-AVATALELIRT----ENRMVGVISH 191 (213)
T ss_pred cCCccccCHHHHHHHHHHHHHHhHHHhhhccCCCC-CEEEEeCCcccCCHHHHH-HHHHHHHHHHh----CCCEEEEEEC
Confidence 344567899999999999999732211 234 567799999999976543 34455555532 2567888887
No 448
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=98.42 E-value=3.2e-06 Score=89.05 Aligned_cols=177 Identities=19% Similarity=0.220 Sum_probs=91.7
Q ss_pred EEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHH-----HHHhhhc------ccCCCcC--Ccchhhh
Q psy11993 414 MAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLR-----THVRHLC------SLHPAAK--HGGREMV 480 (630)
Q Consensus 414 i~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr-----~~~~~l~------~~~~~~~--~tv~env 480 (630)
|+|.|--||||||++..||+.|...|.+|+++++|+...... .+. .....+. ....+.. ....+|+
T Consensus 3 ia~~gKGGVGKTTta~nLA~~La~~G~rVLlID~DpQ~n~t~-~l~g~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~l 81 (290)
T CHL00072 3 LAVYGKGGIGKSTTSCNISIALARRGKKVLQIGCDPKHDSTF-TLTGFLIPTIIDTLQSKDYHYEDVWPEDVIYKGYGGV 81 (290)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeccCCCcccc-cccCcCCCCHHHHHhhcccccccCChhheEEeCCCCe
Confidence 789999999999999999999999999999999998543211 110 0000000 0000000 0112344
Q ss_pred HhhhccCCC---C----HHHHHHHHHHHhh-hcCCCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCccH
Q psy11993 481 QLFEKGYGK---D----PAEIAFRAISHAR-DMHIDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEA 552 (630)
Q Consensus 481 ~l~~~~~~~---d----~~~ia~~ai~~a~-~~~~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~Da 552 (630)
.++..+... + ........++.+. ..+||+|+|||+|+...+. +..++ ...|.+|++.+|.. .+
T Consensus 82 ~lip~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~yD~IiIDt~~~l~~~a-~~aal------~~AD~viIp~~p~~--~s 152 (290)
T CHL00072 82 DCVEAGGPPAGAGCGGYVVGETVKLLKELNAFYEYDIILFDVLGDVVCGG-FAAPL------NYADYCIIITDNGF--DA 152 (290)
T ss_pred EEEeCCCCCCccchhhcccHHHHHHHHHhhccccCCEEEEecCCcceech-hhhhh------hcCCEEEEEecCCH--HH
Confidence 443221110 0 0000111222222 2369999999987743221 21222 23467877777743 23
Q ss_pred HHHHHHHHHHHhhcccCCCCCCeeEEEEcccCCcCccHHHHHHHHHHhCCcEE
Q psy11993 553 VDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTIDDKVGAAISMTYITGQPIV 605 (630)
Q Consensus 553 v~ql~~f~~~l~~~~~~~~~~~i~gIIlTK~D~~~~~~G~~ls~~~~~g~PI~ 605 (630)
+.-+..+.+.+..+.. .....+.++|+|+++.. .. +-......+.|+.
T Consensus 153 l~~~~~l~~~i~~~~~-~~~l~~~gvv~n~~~~~-~~---~~~~~~~~~~~vl 200 (290)
T CHL00072 153 LFAANRIAASVREKAR-THPLRLAGLVGNRTSKR-DL---IDKYVEACPMPVL 200 (290)
T ss_pred HHHHHHHHHHHHHHhc-cCCCceEEEEEeCCCch-hH---HHHHHHHcCCceE
Confidence 3333344433433322 12345779999999853 22 2334455666643
No 449
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=98.42 E-value=5.5e-08 Score=87.30 Aligned_cols=75 Identities=13% Similarity=0.070 Sum_probs=53.3
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccCCCcCCcc
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHPAAKHGG 476 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~~~~~tv 476 (630)
.+|+++++.+.+| ++++|+||+||||||++..|. .+.+.+.+.|...... ++.+.+..+.++. ....++
T Consensus 3 ~aL~~vsl~i~~g--e~v~I~GpSGsGKSTLl~~l~------~G~i~~~g~di~~~~~-~~~~~~~~~~~q~--lf~~ti 71 (107)
T cd00820 3 TSLHGVLVDVYGK--VGVLITGDSGIGKTELALELI------KRKHRLVGDDNVEIRE-DSKDELIGRNPEL--GLEIRL 71 (107)
T ss_pred eEEEeeEEEEcCC--EEEEEEcCCCCCHHHHHHHhh------CCeEEEeeEeHHHhhh-hhcCCEEEEechh--cchhhH
Confidence 3678899999888 999999999999999999986 6789999988743321 2222222223222 445677
Q ss_pred hhhhHh
Q psy11993 477 REMVQL 482 (630)
Q Consensus 477 ~env~l 482 (630)
++|+.+
T Consensus 72 ~~Ni~~ 77 (107)
T cd00820 72 RLNIFL 77 (107)
T ss_pred Hhhcee
Confidence 777765
No 450
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=98.41 E-value=4.6e-06 Score=84.70 Aligned_cols=40 Identities=33% Similarity=0.253 Sum_probs=35.2
Q ss_pred eEEEEEc-cCCCChHHHHHHHHHHHHhcCCeEEEeecccCC
Q psy11993 412 FVMAFCG-VNGVGKSTNLAKICFWLIENNLNVLIAACDTFR 451 (630)
Q Consensus 412 ~vi~lvG-pNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R 451 (630)
.+|+|++ --|+||||++..||..+...|.+|+++++|.+.
T Consensus 2 ~iI~v~s~KGGvGKTt~a~nla~~la~~g~~VlliD~D~q~ 42 (246)
T TIGR03371 2 KVIAIVGVKGGVGKTTLTANLASALKLLGEPVLAIDLDPQN 42 (246)
T ss_pred cEEEEEeCCCCccHHHHHHHHHHHHHhCCCcEEEEeCCCcc
Confidence 4677776 669999999999999999999999999999854
No 451
>TIGR02016 BchX chlorophyllide reductase iron protein subunit X. This model represents the X subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase. This subunit is homologous to the nitrogenase component II, or "iron" protein.
Probab=98.41 E-value=1.7e-06 Score=91.46 Aligned_cols=39 Identities=28% Similarity=0.445 Sum_probs=36.1
Q ss_pred EEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCC
Q psy11993 413 VMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFR 451 (630)
Q Consensus 413 vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R 451 (630)
+|+|+|.-|+||||+...||..+...+.||+++++|+..
T Consensus 2 vIav~gKGGvGKTT~a~nLA~~La~~g~rVLlID~Dpq~ 40 (296)
T TIGR02016 2 IIAIYGKGGSGKSFTTTNLSHMMAEMGKRVLQLGCDPKH 40 (296)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEecCCC
Confidence 688889999999999999999999999999999999843
No 452
>PRK11670 antiporter inner membrane protein; Provisional
Probab=98.41 E-value=5.5e-06 Score=90.17 Aligned_cols=43 Identities=26% Similarity=0.389 Sum_probs=38.6
Q ss_pred eEEEEE-ccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccH
Q psy11993 412 FVMAFC-GVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGA 454 (630)
Q Consensus 412 ~vi~lv-GpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga 454 (630)
.+|++. |--||||||+...||..|...|.+|+++++|++....
T Consensus 108 ~vIaV~S~KGGVGKTT~avNLA~aLA~~G~rVlLID~D~qgps~ 151 (369)
T PRK11670 108 NIIAVSSGKGGVGKSSTAVNLALALAAEGAKVGILDADIYGPSI 151 (369)
T ss_pred EEEEEeCCCCCCCHHHHHHHHHHHHHHCCCcEEEEeCCCCCCCc
Confidence 677776 8889999999999999999999999999999987654
No 453
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=98.40 E-value=3.3e-06 Score=92.70 Aligned_cols=207 Identities=17% Similarity=0.138 Sum_probs=138.5
Q ss_pred hhhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeeccc-CCccHHHHHHHHHhhhcccCC----
Q psy11993 396 VDILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDT-FRAGAVEQLRTHVRHLCSLHP---- 470 (630)
Q Consensus 396 ~~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt-~R~ga~eQLr~~~~~l~~~~~---- 470 (630)
...+++|||.+..| ++++|.|+.|-|-+.++-.|++..++..|+|.+.++|. -|....+..+.-..+++.+..
T Consensus 271 ~~~v~~vs~~Vr~G--EIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~G~~v~~~~~~~~~r~~G~~~VPedR~~~Gl 348 (501)
T COG3845 271 VTAVKDVSFEVRAG--EIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPRERRRLGLAYVPEDRHGHGL 348 (501)
T ss_pred CceeeeeeeEEecC--cEEEEEecCCCCHHHHHHHHhCCCccCCceEEECCEeccccCCHHHHHhcCCccCChhhccCcc
Confidence 35689999999999 99999999999999999999999988889999999997 465555443333344443221
Q ss_pred CcCCcchhhhHhhhccC------C-CCHHHHHHHHHHHhhhcCCCee-------eeccccchhchHHHHHHHHhhhhhcC
Q psy11993 471 AAKHGGREMVQLFEKGY------G-KDPAEIAFRAISHARDMHIDVV-------LIDTAGRMQDNEPLMRALAKLVKVNQ 536 (630)
Q Consensus 471 ~~~~tv~env~l~~~~~------~-~d~~~ia~~ai~~a~~~~~D~v-------lIDTaGr~~~~~~L~~aL~kl~~~~~ 536 (630)
...+++.+|+.+..... + .+...+...+.+..+ .||+. .--+||+.+|+.-++|+|. .+
T Consensus 349 v~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~--~fdVr~~~~~~~a~~LSGGNqQK~IlaREl~-----~~ 421 (501)
T COG3845 349 VLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIE--EFDVRAPSPDAPARSLSGGNQQKLILARELA-----RR 421 (501)
T ss_pred ccCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHH--HcCccCCCCCcchhhcCCcceehhhhhhhhc-----cC
Confidence 55689999987754321 1 334444333333333 35554 3345999999999999999 88
Q ss_pred CCeEEEEeccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEE-cccCCcCccHHHHHHHHHHhCCcEEEEecCCCCc-
Q psy11993 537 PDLLLFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVL-TKFDTIDDKVGAAISMTYITGQPIVFVGTGQTYT- 614 (630)
Q Consensus 537 Pd~VLlV~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIl-TK~D~~~~~~G~~ls~~~~~g~PI~fvg~Gq~v~- 614 (630)
|+ +|++..|+-|+|.-.. ...++.+.+.+.. +-..+++ +.+|| +++++. .|.-+..|.-+.
T Consensus 422 p~-lLI~~qPTrGLDvgA~-~~I~~~l~e~r~~----G~AVLLiS~dLDE-------il~lsD----rIaVi~~Gri~~~ 484 (501)
T COG3845 422 PD-LLIAAQPTRGLDVGAI-EFIHERLLELRDA----GKAVLLISEDLDE-------ILELSD----RIAVIYEGRIVGI 484 (501)
T ss_pred CC-EEEEcCCCccccHHHH-HHHHHHHHHHHhc----CCEEEEEehhHHH-------HHHhhh----eeeeeeCCceecc
Confidence 95 5559999999996553 3344444444332 3333333 55666 455555 356666666654
Q ss_pred -cCCCCCHHHHHHHh
Q psy11993 615 -DLKSLNAKAVVNAL 628 (630)
Q Consensus 615 -DL~~~~~~~~v~~L 628 (630)
+-..++++.+-.+|
T Consensus 485 ~~~~~~t~~~iG~lM 499 (501)
T COG3845 485 VPPEEATREEIGLLM 499 (501)
T ss_pred cccccCCHHHHHHhh
Confidence 55556677665544
No 454
>PRK13235 nifH nitrogenase reductase; Reviewed
Probab=98.40 E-value=1.5e-06 Score=90.29 Aligned_cols=40 Identities=30% Similarity=0.401 Sum_probs=36.9
Q ss_pred eEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCC
Q psy11993 412 FVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFR 451 (630)
Q Consensus 412 ~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R 451 (630)
++|+|+|--||||||++..||+.|...|.+|+++++|+.-
T Consensus 2 ~~iav~~KGGVGKTT~~~nLA~~La~~G~rVLlID~Dpq~ 41 (274)
T PRK13235 2 RKVAIYGKGGIGKSTTTQNTVAGLAEMGKKVMVVGCDPKA 41 (274)
T ss_pred CEEEEeCCCCccHHHHHHHHHHHHHHCCCcEEEEecCCcc
Confidence 4788889999999999999999999999999999999854
No 455
>TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase. Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins.
Probab=98.39 E-value=4.6e-06 Score=83.28 Aligned_cols=155 Identities=18% Similarity=0.142 Sum_probs=83.0
Q ss_pred CeEEEEEccC-CCChHHHHHHHHHHHHh-cCCeEEEeecccCCccHHHHHH-----HHHhhhcccC-CCc---CCcchhh
Q psy11993 411 PFVMAFCGVN-GVGKSTNLAKICFWLIE-NNLNVLIAACDTFRAGAVEQLR-----THVRHLCSLH-PAA---KHGGREM 479 (630)
Q Consensus 411 p~vi~lvGpN-GvGKTTllakLA~~l~~-~ggkVlI~~~Dt~R~ga~eQLr-----~~~~~l~~~~-~~~---~~tv~en 479 (630)
..+|+|+|+. |+||||++..||..+.. .+.+|+++++|+++......+. .+...+.... .+. ..+..++
T Consensus 35 ~~vi~v~s~kgG~GkSt~a~nLA~~la~~~g~~VLlvD~D~~~~~~~~~~~~~~~~~l~~~l~~~~~~l~~~i~~~~~~~ 114 (207)
T TIGR03018 35 NNLIMVTSSLPGEGKSFTAINLAISLAQEYDKTVLLIDADLRRPSLHRTLGLEAEPGLSDCLLDPVLDLADVLVPTNIGR 114 (207)
T ss_pred CeEEEEECCCCCCCHHHHHHHHHHHHHHhcCCeEEEEECCCCChhhhheeCCCCCCCHHHHHcCCCCCHHHHhccCCCCC
Confidence 3799999755 99999999999998876 5889999999986543221111 1111111110 000 0011233
Q ss_pred hHhhhccCCC-CHH-----HHHHHHHHHhhhc-CCCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCccH
Q psy11993 480 VQLFEKGYGK-DPA-----EIAFRAISHARDM-HIDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEA 552 (630)
Q Consensus 480 v~l~~~~~~~-d~~-----~ia~~ai~~a~~~-~~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~Da 552 (630)
+.+...+... .+. ....++++.+... .+|+|+||+++..... ...++. ...|.+++|.++..- .
T Consensus 115 l~vl~~g~~~~~~~~~~~~~~l~~~l~~l~~~y~~D~IiiD~pp~~~~~--~~~~l~-----~~aD~viiV~~~~~~--~ 185 (207)
T TIGR03018 115 LSLLPAGRRHPNPTELLASQRMRSLLHELARRYPDRIIIIDTPPLLVFS--EARALA-----RLVGQIVLVVEEGRT--T 185 (207)
T ss_pred EEEEeCCCCCCCHHHHhCcHHHHHHHHHHHhhCCCCEEEEECCCCcchh--HHHHHH-----HhCCEEEEEEECCCC--C
Confidence 4443322221 111 1133445444433 2399999999887532 223333 224778888777422 2
Q ss_pred HHHHHHHHHHHhhcccCCCCCCeeEEEEc
Q psy11993 553 VDQLVKFNNAMADHSLSDNPHLIDGIVLT 581 (630)
Q Consensus 553 v~ql~~f~~~l~~~~~~~~~~~i~gIIlT 581 (630)
...+...-+.++ ...+-|+|+|
T Consensus 186 ~~~~~~~~~~l~-------~~~~~G~v~N 207 (207)
T TIGR03018 186 QEAVKEALSALE-------SCKVLGVVLN 207 (207)
T ss_pred HHHHHHHHHHhc-------CCCeEEEEeC
Confidence 222333333332 2467888875
No 456
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=98.38 E-value=1.8e-06 Score=90.03 Aligned_cols=39 Identities=36% Similarity=0.567 Sum_probs=36.8
Q ss_pred eEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccC
Q psy11993 412 FVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTF 450 (630)
Q Consensus 412 ~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~ 450 (630)
.+|+|+|--||||||++..||+.|...|.+|+++++|+.
T Consensus 2 ~~i~~~gKGGVGKTT~a~nLA~~La~~G~rVLliD~Dpq 40 (279)
T PRK13230 2 RKFCFYGKGGIGKSTTVCNIAAALAESGKKVLVVGCDPK 40 (279)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHhCCCEEEEEeeCCc
Confidence 478999999999999999999999999999999999985
No 457
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=98.38 E-value=7.9e-06 Score=84.38 Aligned_cols=38 Identities=34% Similarity=0.428 Sum_probs=36.0
Q ss_pred EEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccC
Q psy11993 413 VMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTF 450 (630)
Q Consensus 413 vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~ 450 (630)
++.+.|..|+||||+.+.+|..+...+.+|+++++|..
T Consensus 2 ~~~~~gkgG~GKtt~a~~la~~~a~~g~~vLlvd~D~~ 39 (254)
T cd00550 2 YIFFGGKGGVGKTTISAATAVRLAEQGKKVLLVSTDPA 39 (254)
T ss_pred EEEEECCCCchHHHHHHHHHHHHHHCCCCceEEeCCCc
Confidence 78899999999999999999999999999999999984
No 458
>PRK12337 2-phosphoglycerate kinase; Provisional
Probab=98.36 E-value=8.1e-07 Score=98.02 Aligned_cols=108 Identities=22% Similarity=0.336 Sum_probs=74.1
Q ss_pred HHHH--HHHHHHHcCCCHHHHHHHHHHHHHHhc--CCccCCccchHHHHHHHHHHHHHHHcCCCcchhhhhhhhhhhcc-
Q psy11993 334 ILEK--MKDHLIAKNVAADIAVKLCDSVALKLE--GKVLGTFESVANTVKSTLTDALVQILSPKRRVDILRDALEAKKQ- 408 (630)
Q Consensus 334 ~l~~--l~~~Li~~~V~~~ia~~l~~~v~~~l~--g~~~~~~~~~~~~v~~~l~~~L~~il~~~~~~~iL~~i~~~i~~- 408 (630)
++.+ +...|++.||++++|.+|++.+++.+. |..... ...++..+.+.+...+.+..... + +....+..
T Consensus 179 PFSkGiLaRsLi~aDV~~~~A~~Ia~~Lk~~L~~kg~~~~~----ra~VR~~V~~~L~~~l~~~~a~~-y-~la~~i~~~ 252 (475)
T PRK12337 179 PFSKGILAQSLMAAGLAPDVARRLARETERDLRRSGDRVVR----RDQLRRKVEALLLEEAGEEVARR-Y-RLLRSIRRP 252 (475)
T ss_pred CCchhHHHHHHHHcCCCHHHHHHHHHHHHHHHHhccccccc----HHHHHHHHHHHHHhhhhhhHHHH-H-HHHHHhhcc
Confidence 4555 889999999999999999999998883 443333 34456666666665554311000 0 01111222
Q ss_pred CCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCC
Q psy11993 409 GRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFR 451 (630)
Q Consensus 409 g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R 451 (630)
.+|.+|+|+|+||+||||++.+||..+.. ..++..|+.|
T Consensus 253 k~p~vil~~G~~G~GKSt~a~~LA~~lg~----~~ii~tD~iR 291 (475)
T PRK12337 253 PRPLHVLIGGVSGVGKSVLASALAYRLGI----TRIVSTDAVR 291 (475)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHcCC----cEEeehhHHH
Confidence 46899999999999999999999988732 3377888855
No 459
>COG0489 Mrp ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=98.36 E-value=4.9e-06 Score=86.58 Aligned_cols=175 Identities=22% Similarity=0.213 Sum_probs=95.2
Q ss_pred eEEEEE-ccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHH-----hhh-cc-cCCCcCCcchhhhHhh
Q psy11993 412 FVMAFC-GVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHV-----RHL-CS-LHPAAKHGGREMVQLF 483 (630)
Q Consensus 412 ~vi~lv-GpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~-----~~l-~~-~~~~~~~tv~env~l~ 483 (630)
.+|++. |..|+||||+...||..+...|.+|+++++|.+.+....-+..-. ..+ +. ..+...++...++.+.
T Consensus 58 ~~I~V~S~kgGvGKStva~nLA~alA~~G~rVlliDaD~~gps~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~lsi~ 137 (265)
T COG0489 58 NVIAVTSGKGGVGKSTVAVNLAAALAQLGKRVLLLDADLRGPSIPRMLGLENLPGLTELLAGEALEPVIQHDGIKVLSIL 137 (265)
T ss_pred eEEEEEeCCCCCcHHHHHHHHHHHHHhcCCcEEEEeCcCCCCchHHHhCCCCCCCcccccCCCccccceecCccceEEEE
Confidence 455555 999999999999999999999999999999998776543333210 000 00 0001111112222222
Q ss_pred hcc-CCCCHHH-----HHHHHHHHhhhcCCCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccc-cCccHHHHH
Q psy11993 484 EKG-YGKDPAE-----IAFRAISHARDMHIDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEAL-VGNEAVDQL 556 (630)
Q Consensus 484 ~~~-~~~d~~~-----ia~~ai~~a~~~~~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~-~g~Dav~ql 556 (630)
..+ ...++.+ ...+.+..+....||+++||++++...-.. ..+. .-|+-+++|..|- +....+..+
T Consensus 138 ~~~~~p~~~r~~l~s~~~~qll~~~~~~~~D~vIID~PP~~g~~d~--~i~~-----~~~~g~viVt~p~~~~~~~v~ka 210 (265)
T COG0489 138 PLGPVPVIPRGLLGSKAMLQLLEDVLWGEYDYVIIDTPPGTGDADA--TVLQ-----RIPDGVVIVTTPGKTALEDVKKA 210 (265)
T ss_pred ecCCCCCCChHhhhhHHHHHHHHHHhccCCCEEEEeCCCCchHHHH--HHHh-----ccCCeEEEEeCCccchHHHHHHH
Confidence 111 1122322 133445455555699999999988653221 2222 3345677777773 222222222
Q ss_pred HHHHHHHhhcccCCCCCCeeEEEEcccCCcCccH--HHHHHHHHHhC
Q psy11993 557 VKFNNAMADHSLSDNPHLIDGIVLTKFDTIDDKV--GAAISMTYITG 601 (630)
Q Consensus 557 ~~f~~~l~~~~~~~~~~~i~gIIlTK~D~~~~~~--G~~ls~~~~~g 601 (630)
..+-+.. ...+.|+|.++.+-.+.+. |..-.....++
T Consensus 211 ~~~~~~~--------~~~vlGvv~Nm~~~~~~~~~~g~~~~~~~~~~ 249 (265)
T COG0489 211 IDMLEKA--------GIPVLGVVENMSYFICPRCGEGGGEKYAERYG 249 (265)
T ss_pred HHHHHhc--------CCceEEEEecCccCcccccCCCchhhHHHHhc
Confidence 2221111 2468899999887765444 23333444443
No 460
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=98.36 E-value=4.7e-07 Score=92.93 Aligned_cols=64 Identities=11% Similarity=0.048 Sum_probs=42.9
Q ss_pred eccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 512 IDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 512 IDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
.+.|++++++..++++++.- ....| .++++|||+.++|.... ..+.+.+.++.. .+.+.|++|+
T Consensus 154 ~~LS~G~k~rl~la~al~~~-~~~~p-~~lllDEPt~~LD~~~~-~~l~~~i~~~~~----~g~~vi~isH 217 (247)
T cd03275 154 DNLSGGEKTMAALALLFAIH-SYQPA-PFFVLDEVDAALDNTNV-GKVASYIREQAG----PNFQFIVISL 217 (247)
T ss_pred HHcCHHHHHHHHHHHHHHHh-ccCCC-CEEEEecccccCCHHHH-HHHHHHHHHhcc----CCcEEEEEEC
Confidence 56688888888888888710 00124 57779999999997654 344455655532 2567788887
No 461
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=98.34 E-value=1.7e-06 Score=85.65 Aligned_cols=198 Identities=20% Similarity=0.183 Sum_probs=114.2
Q ss_pred HcCCCcchhhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHH--------H
Q psy11993 389 ILSPKRRVDILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLR--------T 460 (630)
Q Consensus 389 il~~~~~~~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr--------~ 460 (630)
+.++...+.+++.+++.+.+| ++-++||.+|+|||-.++.||+..+.+ .++++|-||.+.++-|+ .
T Consensus 13 ~~TsqG~vK~VD~v~ltlnEG--Ei~GLVGESGSGKSLiAK~Ic~v~kdn----W~vTADR~Rf~~idLL~L~Pr~RRk~ 86 (330)
T COG4170 13 FKTSQGWVKAVDRVSMTLNEG--EIRGLVGESGSGKSLIAKAICGVNKDN----WRVTADRMRFDDIDLLRLSPRERRKL 86 (330)
T ss_pred EecCCCceEeeeeeeeeeccc--eeeeeeccCCCchhHHHHHHhcccccc----eEEEhhhcccccchhhcCChHHhhhh
Confidence 445555677888999999999 999999999999999999999987654 34566666665554432 2
Q ss_pred HHhhhcccCCC------cCCc-c---hhhhHhhhccCCCCH----HHHHHHHHHHhhhcCC---Cee----eeccccchh
Q psy11993 461 HVRHLCSLHPA------AKHG-G---REMVQLFEKGYGKDP----AEIAFRAISHARDMHI---DVV----LIDTAGRMQ 519 (630)
Q Consensus 461 ~~~~l~~~~~~------~~~t-v---~env~l~~~~~~~d~----~~ia~~ai~~a~~~~~---D~v----lIDTaGr~~ 519 (630)
.+..+...++. +..+ + .+|++.+. |.... .-..++|++.+..-+. ..+ .....-+.-
T Consensus 87 ig~~isMIFQeP~sCLDPS~~iG~QlIq~IP~wT--fkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM~SYP~ElTeGE~ 164 (330)
T COG4170 87 VGHNVSMIFQEPQSCLDPSERVGRQLIQNIPAWT--YKGRWWQRFGWRKRRAIELLHRVGIKDHKDIMRSYPYELTEGEC 164 (330)
T ss_pred hccchhhhhcCchhhcChHHHHHHHHHhhCcccc--ccchHhhhhchhHHHHHHHHHHhccccHHHHHHhCcchhccCcc
Confidence 22222222221 1111 1 11222110 10000 0112445554443332 111 223334455
Q ss_pred chHHHHHHHHhhhhhcCCCeEEEEeccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcccCCcCccHHHHHHHHHH
Q psy11993 520 DNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTIDDKVGAAISMTYI 599 (630)
Q Consensus 520 ~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK~D~~~~~~G~~ls~~~~ 599 (630)
+...++.+++ ++|. +|+.|||+...+...|++.|+ .+..+. ...-+.|+++--|-. +...
T Consensus 165 QKVMIA~A~A-----nqPr-LLIADEPTN~~e~~Tq~QifR-LLs~mN----Qn~~TtILL~s~Dl~---------~is~ 224 (330)
T COG4170 165 QKVMIAIALA-----NQPR-LLIADEPTNSMEPTTQAQIFR-LLSRLN----QNSNTTILLISHDLQ---------MISQ 224 (330)
T ss_pred eeeeeehhhc-----cCCc-eEeccCCCcccCccHHHHHHH-HHHHhh----ccCCceEEEEcccHH---------HHHH
Confidence 6666777777 8884 556999999999999988886 333332 223456676654532 2223
Q ss_pred hCCcEEEEecCCCCc
Q psy11993 600 TGQPIVFVGTGQTYT 614 (630)
Q Consensus 600 ~g~PI~fvg~Gq~v~ 614 (630)
.--.|..+.+||++.
T Consensus 225 W~d~i~VlYCGQ~~E 239 (330)
T COG4170 225 WADKINVLYCGQTVE 239 (330)
T ss_pred HhhheEEEEeccccc
Confidence 333567777888863
No 462
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=98.33 E-value=2.9e-06 Score=83.37 Aligned_cols=167 Identities=22% Similarity=0.290 Sum_probs=106.8
Q ss_pred CCC-eEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccCCCcCCcchhhhHhhhcc-
Q psy11993 409 GRP-FVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHPAAKHGGREMVQLFEKG- 486 (630)
Q Consensus 409 g~p-~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~~~~~tv~env~l~~~~- 486 (630)
.+| ..|.|.||.||||||++-+++..++.. .++.++..|.+.....+.++.. .+.. +.-...+
T Consensus 10 ~~~~~~i~v~Gp~GSGKTaLie~~~~~L~~~-~~~aVI~~Di~t~~Da~~l~~~---~g~~-----------i~~v~TG~ 74 (202)
T COG0378 10 NRPMLRIGVGGPPGSGKTALIEKTLRALKDE-YKIAVITGDIYTKEDADRLRKL---PGEP-----------IIGVETGK 74 (202)
T ss_pred cCceEEEEecCCCCcCHHHHHHHHHHHHHhh-CCeEEEeceeechhhHHHHHhC---CCCe-----------eEEeccCC
Confidence 355 789999999999999999999999776 9999999999875555565552 2210 0001111
Q ss_pred CCCCHHHHHHHHHHHhhhc--CCCeeeeccccchhchHHHHHHHHhhhhhcCCC----eEEEEeccccCccHHHHHHHHH
Q psy11993 487 YGKDPAEIAFRAISHARDM--HIDVVLIDTAGRMQDNEPLMRALAKLVKVNQPD----LLLFVGEALVGNEAVDQLVKFN 560 (630)
Q Consensus 487 ~~~d~~~ia~~ai~~a~~~--~~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd----~VLlV~E~~~g~Dav~ql~~f~ 560 (630)
-+..++.+...+++.+... .+|+++|...| .. .. ...|+ .-++|.+.+.|.+..... .
T Consensus 75 ~CH~da~m~~~ai~~l~~~~~~~Dll~iEs~G-NL-----~~-------~~sp~L~d~~~v~VidvteGe~~P~K~---g 138 (202)
T COG0378 75 GCHLDASMNLEAIEELVLDFPDLDLLFIESVG-NL-----VC-------PFSPDLGDHLRVVVIDVTEGEDIPRKG---G 138 (202)
T ss_pred ccCCcHHHHHHHHHHHhhcCCcCCEEEEecCc-ce-----ec-------ccCcchhhceEEEEEECCCCCCCcccC---C
Confidence 1113445555666666543 26999999998 21 00 01222 456788888887754310 0
Q ss_pred HHHhhcccCCCCCCeeEEEEcccCCcCccHHHHHHHHHH------hCCcEEEEe--cCCCCccC
Q psy11993 561 NAMADHSLSDNPHLIDGIVLTKFDTIDDKVGAAISMTYI------TGQPIVFVG--TGQTYTDL 616 (630)
Q Consensus 561 ~~l~~~~~~~~~~~i~gIIlTK~D~~~~~~G~~ls~~~~------~g~PI~fvg--~Gq~v~DL 616 (630)
..+ ..-+.+|+||.|-+ ..+|+=+.++.. -+.||.|+. |||...++
T Consensus 139 P~i---------~~aDllVInK~DLa-~~v~~dlevm~~da~~~np~~~ii~~n~ktg~G~~~~ 192 (202)
T COG0378 139 PGI---------FKADLLVINKTDLA-PYVGADLEVMARDAKEVNPEAPIIFTNLKTGEGLDEW 192 (202)
T ss_pred Cce---------eEeeEEEEehHHhH-HHhCccHHHHHHHHHHhCCCCCEEEEeCCCCcCHHHH
Confidence 001 12567999999997 788874444332 268999865 78887655
No 463
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=98.33 E-value=7.4e-07 Score=95.66 Aligned_cols=179 Identities=20% Similarity=0.186 Sum_probs=102.3
Q ss_pred hhhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHH--------hcCCeEEEeecccCCccHHHHHHHHHhhhcc
Q psy11993 396 VDILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLI--------ENNLNVLIAACDTFRAGAVEQLRTHVRHLCS 467 (630)
Q Consensus 396 ~~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~--------~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~ 467 (630)
.-+|+++++.+++| .+++++|++|+||||++++|++... |+.|+|-+-. ++ .+ ..++.
T Consensus 396 ryvlr~vNL~ikpG--dvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~-nt--~~---------a~iPg 461 (593)
T COG2401 396 RYVLRNLNLEIKPG--DVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPK-NT--VS---------ALIPG 461 (593)
T ss_pred eeeeeceeeEecCC--CeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccc-cc--hh---------hccCc
Confidence 45899999999999 9999999999999999999998643 5566665532 11 11 11111
Q ss_pred cCC--CcCCcchhhhHhhhccCCCCHHHHHHHHHHHhhhcC---CCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEE
Q psy11993 468 LHP--AAKHGGREMVQLFEKGYGKDPAEIAFRAISHARDMH---IDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLF 542 (630)
Q Consensus 468 ~~~--~~~~tv~env~l~~~~~~~d~~~ia~~ai~~a~~~~---~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLl 542 (630)
... +..-|+.+.+ .+.. .|. ..+.+++..+...+ |-.-+-+++.+++.+..|++.|+ ..| .+++
T Consensus 462 e~Ep~f~~~tilehl---~s~t-GD~-~~AveILnraGlsDAvlyRr~f~ELStGQKeR~KLAklla-----erp-n~~~ 530 (593)
T COG2401 462 EYEPEFGEVTILEHL---RSKT-GDL-NAAVEILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLA-----ERP-NVLL 530 (593)
T ss_pred ccccccCchhHHHHH---hhcc-Cch-hHHHHHHHhhccchhhhhhccHhhcCcchHHHHHHHHHHh-----cCC-CcEE
Confidence 111 1111111111 1111 121 12223333333221 12236788999999999999988 777 4556
Q ss_pred EeccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcccCCcCccHHHHHHHHHHhCCcEEEEecCCC
Q psy11993 543 VGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGTGQT 612 (630)
Q Consensus 543 V~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK~D~~~~~~G~~ls~~~~~g~PI~fvg~Gq~ 612 (630)
+||..+-+|.+...+ ..+.+.+++ +..+++.+++|.=- -++.+|. ---+.|+|.|..
T Consensus 531 iDEF~AhLD~~TA~r-VArkisela---Re~giTlivvThrp----Ev~~AL~-----PD~li~vgYg~v 587 (593)
T COG2401 531 IDEFAAHLDELTAVR-VARKISELA---REAGITLIVVTHRP----EVGNALR-----PDTLILVGYGKV 587 (593)
T ss_pred hhhhhhhcCHHHHHH-HHHHHHHHH---HHhCCeEEEEecCH----HHHhccC-----CceeEEeecccc
Confidence 888887777554322 222222222 23579999999732 3444441 112566666643
No 464
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=98.31 E-value=6.7e-06 Score=84.25 Aligned_cols=34 Identities=32% Similarity=0.454 Sum_probs=28.3
Q ss_pred EEccCCCChHHHHHHHHHHHHhcCCeEEEeeccc
Q psy11993 416 FCGVNGVGKSTNLAKICFWLIENNLNVLIAACDT 449 (630)
Q Consensus 416 lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt 449 (630)
++||.||||||+++.+..|+...+.++.++..|+
T Consensus 1 ViGpaGSGKTT~~~~~~~~~~~~~~~~~~vNLDP 34 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWLESNGRDVYIVNLDP 34 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHHTTT-S-EEEEE--T
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCceEEEcch
Confidence 6899999999999999999999999999999998
No 465
>TIGR01968 minD_bact septum site-determining protein MinD. This model describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model.
Probab=98.31 E-value=6.4e-06 Score=84.12 Aligned_cols=157 Identities=18% Similarity=0.156 Sum_probs=85.0
Q ss_pred eEEEEEc-cCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHH-------HHHhhhcccCC----CcCCcchhh
Q psy11993 412 FVMAFCG-VNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLR-------THVRHLCSLHP----AAKHGGREM 479 (630)
Q Consensus 412 ~vi~lvG-pNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr-------~~~~~l~~~~~----~~~~tv~en 479 (630)
++|+|++ --||||||++..||..+...+.+|+++++|.........+. .+...+..... ....+..++
T Consensus 2 ~ii~v~s~kGGvGKTt~a~~lA~~la~~g~~vlliD~D~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 81 (261)
T TIGR01968 2 RVIVITSGKGGVGKTTTTANLGTALARLGKKVVLIDADIGLRNLDLLLGLENRIVYTLVDVVEGECRLQQALIKDKRLKN 81 (261)
T ss_pred eEEEEecCCCCccHHHHHHHHHHHHHHcCCeEEEEECCCCCCCeeEEeCCCCcCCCCHHHHhcCcCcHHHHhhcCCCCCC
Confidence 5777775 55999999999999999988899999999985322110000 00010100000 000011123
Q ss_pred hHhhhccCC-----CCHHHHHHHHHHHhhhcCCCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCccHHH
Q psy11993 480 VQLFEKGYG-----KDPAEIAFRAISHARDMHIDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVD 554 (630)
Q Consensus 480 v~l~~~~~~-----~d~~~ia~~ai~~a~~~~~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~Dav~ 554 (630)
+.++..... .++ ....++++.+.. .||+|+||++++... ....++. ..|.++++.+|.. .++.
T Consensus 82 l~~l~~~~~~~~~~~~~-~~l~~~l~~l~~-~~D~viiD~p~~~~~--~~~~~l~------~aD~viiv~~~~~--~s~~ 149 (261)
T TIGR01968 82 LYLLPASQTRDKDAVTP-EQMKKLVNELKE-EFDYVIIDCPAGIES--GFRNAVA------PADEAIVVTTPEV--SAVR 149 (261)
T ss_pred eEEEeCCCchhhhhCCH-HHHHHHHHHHHH-hCCEEEEeCCCCcCH--HHHHHHH------hCCeEEEEcCCCc--HHHH
Confidence 333322111 111 123445555543 699999999988643 2233333 3467888887743 2334
Q ss_pred HHHHHHHHHhhcccCCCCCCeeEEEEcccCC
Q psy11993 555 QLVKFNNAMADHSLSDNPHLIDGIVLTKFDT 585 (630)
Q Consensus 555 ql~~f~~~l~~~~~~~~~~~i~gIIlTK~D~ 585 (630)
.+..+.+.+.... ....++++++++.
T Consensus 150 ~~~~~~~~l~~~~-----~~~~~iviN~~~~ 175 (261)
T TIGR01968 150 DADRVIGLLEAKG-----IEKIHLIVNRLRP 175 (261)
T ss_pred HHHHHHHHHHHcC-----CCceEEEEeCcCc
Confidence 4444444443322 1245789999875
No 466
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=98.30 E-value=1.3e-06 Score=94.88 Aligned_cols=162 Identities=14% Similarity=0.188 Sum_probs=90.3
Q ss_pred eEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccCCCcCCcchhhhHhhhcc-CCCC
Q psy11993 412 FVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHPAAKHGGREMVQLFEKG-YGKD 490 (630)
Q Consensus 412 ~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~~~~~tv~env~l~~~~-~~~d 490 (630)
++|+++||||-||||++..||+.++|+.|. ..|. +.+-..| ++ .+....|+.+.+.-.... ++..
T Consensus 368 EvigilGpNgiGKTTFvk~LAG~ikPdeg~----~~~~-~vSyKPQ------yI---~~~~~gtV~~~l~~~~~~~~~~s 433 (591)
T COG1245 368 EVIGILGPNGIGKTTFVKLLAGVIKPDEGS----EEDL-KVSYKPQ------YI---SPDYDGTVEDLLRSAIRSAFGSS 433 (591)
T ss_pred eEEEEECCCCcchHHHHHHHhccccCCCCC----Cccc-eEeecce------ee---cCCCCCcHHHHHHHhhhhhcccc
Confidence 899999999999999999999999999775 1121 1110001 00 011123333322211111 1111
Q ss_pred HHHHHHHHHHHhhhc-CCCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCccHHHHHHHHHHHHhhcccC
Q psy11993 491 PAEIAFRAISHARDM-HIDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQLVKFNNAMADHSLS 569 (630)
Q Consensus 491 ~~~ia~~ai~~a~~~-~~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~Dav~ql~~f~~~l~~~~~~ 569 (630)
. ..-+.+.-+... =+|.-+-++||+..|+..++.+|. ... .+.++|||++-+|.-+. ....+.++++...
T Consensus 434 ~--~~~ei~~pl~l~~i~e~~v~~LSGGELQRvaIaa~L~-----reA-DlYllDEPSA~LDvEqR-~~vakvIRR~~e~ 504 (591)
T COG1245 434 Y--FKTEIVKPLNLEDLLERPVDELSGGELQRVAIAAALS-----REA-DLYLLDEPSAYLDVEQR-IIVAKVIRRFIEN 504 (591)
T ss_pred h--hHHhhcCccchHHHHhcccccCCchhHHHHHHHHHhc-----ccc-CEEEecCchhhccHHHH-HHHHHHHHHHHhh
Confidence 0 000111111110 124447789999999999999998 444 45669999999986543 3445566666542
Q ss_pred CCCCCeeEEEEcccCCcCccHHHHHHHHHHhCCcEEEEe
Q psy11993 570 DNPHLIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVG 608 (630)
Q Consensus 570 ~~~~~i~gIIlTK~D~~~~~~G~~ls~~~~~g~PI~fvg 608 (630)
..-+.+|+-+ | ++-+-|....=|.|-|
T Consensus 505 ---~~kta~vVdH-D--------i~~~dyvsDr~ivF~G 531 (591)
T COG1245 505 ---NEKTALVVDH-D--------IYMIDYVSDRLIVFEG 531 (591)
T ss_pred ---cCceEEEEec-c--------eehhhhhhceEEEEec
Confidence 3456677665 2 2233344455577765
No 467
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=98.29 E-value=2.2e-05 Score=80.47 Aligned_cols=38 Identities=32% Similarity=0.346 Sum_probs=35.8
Q ss_pred eEEEEEccC-CCChHHHHHHHHHHHHhcCCeEEEeeccc
Q psy11993 412 FVMAFCGVN-GVGKSTNLAKICFWLIENNLNVLIAACDT 449 (630)
Q Consensus 412 ~vi~lvGpN-GvGKTTllakLA~~l~~~ggkVlI~~~Dt 449 (630)
.+|+|+|+. ||||||+.+.||..|...|.+|+.+++|+
T Consensus 2 ~~iai~s~kGGvG~TTltAnLA~aL~~~G~~VlaID~dp 40 (243)
T PF06564_consen 2 KVIAIVSPKGGVGKTTLTANLAWALARLGESVLAIDLDP 40 (243)
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHHHHCCCcEEEEeCCc
Confidence 589999999 78999999999999999999999999996
No 468
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=98.28 E-value=1.2e-05 Score=84.28 Aligned_cols=90 Identities=18% Similarity=0.258 Sum_probs=58.7
Q ss_pred eEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccCCCcCCcchhhhHhhhcc-CCCC
Q psy11993 412 FVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHPAAKHGGREMVQLFEKG-YGKD 490 (630)
Q Consensus 412 ~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~~~~~tv~env~l~~~~-~~~d 490 (630)
.++.|+|++||||||++.+|...+... .++.++..|.......+.++. .+. + .+.+-... ...+
T Consensus 105 ~~v~l~G~pGsGKTTLl~~l~~~l~~~-~~~~VI~gD~~t~~Da~rI~~----~g~--p--------vvqi~tG~~Chl~ 169 (290)
T PRK10463 105 LVLNLVSSPGSGKTTLLTETLMRLKDS-VPCAVIEGDQQTVNDAARIRA----TGT--P--------AIQVNTGKGCHLD 169 (290)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhccC-CCEEEECCCcCcHHHHHHHHh----cCC--c--------EEEecCCCCCcCc
Confidence 899999999999999999999998665 577777777644332222222 221 0 01121111 1123
Q ss_pred HHHHHHHHHHHhhhcCCCeeeeccccc
Q psy11993 491 PAEIAFRAISHARDMHIDVVLIDTAGR 517 (630)
Q Consensus 491 ~~~ia~~ai~~a~~~~~D~vlIDTaGr 517 (630)
......++..+...+.|+++|++.|.
T Consensus 170 -a~mv~~Al~~L~~~~~d~liIEnvGn 195 (290)
T PRK10463 170 -AQMIADAAPRLPLDDNGILFIENVGN 195 (290)
T ss_pred -HHHHHHHHHHHhhcCCcEEEEECCCC
Confidence 33455677777777889999999995
No 469
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=98.26 E-value=5.9e-06 Score=99.16 Aligned_cols=63 Identities=14% Similarity=0.103 Sum_probs=46.6
Q ss_pred eeeccccchhchHHHHHHHHhhhhhcCC--CeEEEEeccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 510 VLIDTAGRMQDNEPLMRALAKLVKVNQP--DLLLFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 510 vlIDTaGr~~~~~~L~~aL~kl~~~~~P--d~VLlV~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
.+-..||+++++..++++|. .+| ..++++|||++|+|..++. .+.+.+.++.. .+.+.||+|+
T Consensus 827 ~~~tLSgGEkQRl~LAraL~-----~~p~~~~llILDEPtsGLD~~~~~-~L~~~L~~l~~----~G~TVIiitH 891 (943)
T PRK00349 827 PATTLSGGEAQRVKLAKELS-----KRSTGKTLYILDEPTTGLHFEDIR-KLLEVLHRLVD----KGNTVVVIEH 891 (943)
T ss_pred CcccCCHHHHHHHHHHHHHh-----cCCCCCeEEEEECCCCCCCHHHHH-HHHHHHHHHHh----CCCEEEEEec
Confidence 35667999999999999998 555 2577899999999987654 34445555532 2567788887
No 470
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=98.26 E-value=7.6e-06 Score=78.48 Aligned_cols=145 Identities=21% Similarity=0.270 Sum_probs=75.9
Q ss_pred EEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccCCCcCCcchhhhHhhhccCC----
Q psy11993 413 VMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHPAAKHGGREMVQLFEKGYG---- 488 (630)
Q Consensus 413 vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~~~~~tv~env~l~~~~~~---- 488 (630)
++.|+|++|+||||++..+.... .+.++.++..+.-..+-..++ ...-+ ..+++-..+
T Consensus 2 ~~~l~G~~GsGKTtl~~~l~~~~--~~~~~~~i~~~~G~~~~d~~~---~~~~~-------------~~v~~l~~GCiCC 63 (158)
T cd03112 2 VTVLTGFLGAGKTTLLNHILTEQ--HGRKIAVIENEFGEVGIDNQL---VVDTD-------------EEIIEMNNGCICC 63 (158)
T ss_pred EEEEEECCCCCHHHHHHHHHhcc--cCCcEEEEecCCCccchhHHH---HhCCC-------------ceEEEeCCCEeEe
Confidence 68899999999999999988764 356787777665322211111 00000 011111111
Q ss_pred --CCH-HHHHHHHHHHh--hhcCCCeeeeccccchhchHHHHHHHH---hhhhhcCCCeEEEEeccccCccHHHHHHHHH
Q psy11993 489 --KDP-AEIAFRAISHA--RDMHIDVVLIDTAGRMQDNEPLMRALA---KLVKVNQPDLLLFVGEALVGNEAVDQLVKFN 560 (630)
Q Consensus 489 --~d~-~~ia~~ai~~a--~~~~~D~vlIDTaGr~~~~~~L~~aL~---kl~~~~~Pd~VLlV~E~~~g~Dav~ql~~f~ 560 (630)
.+. .....+.++.+ ....+|.|+|||+|.... ..++..+. .+......+.++++.|+............+.
T Consensus 64 ~~~~~l~~~l~~l~~~~~~~~~~~d~I~IEt~G~~~p-~~~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~~~~~~~~~ 142 (158)
T cd03112 64 TVRGDLIRALLDLLERLDAGKIAFDRIVIETTGLADP-GPVAQTFFMDEELAERYLLDGVITLVDAKHANQHLDQQTEAQ 142 (158)
T ss_pred eCchhHHHHHHHHHHHHHhccCCCCEEEEECCCcCCH-HHHHHHHhhchhhhcceeeccEEEEEEhhHhHHHhhccHHHH
Confidence 111 11111122221 234689999999997643 34444431 1112234566777888765444332222222
Q ss_pred HHHhhcccCCCCCCeeEEEEcccCC
Q psy11993 561 NAMADHSLSDNPHLIDGIVLTKFDT 585 (630)
Q Consensus 561 ~~l~~~~~~~~~~~i~gIIlTK~D~ 585 (630)
..+. .-+.||+||.|.
T Consensus 143 ~Qi~---------~ad~ivlnk~dl 158 (158)
T cd03112 143 SQIA---------FADRILLNKTDL 158 (158)
T ss_pred HHHH---------HCCEEEEecccC
Confidence 2221 356799999984
No 471
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=98.25 E-value=1.2e-05 Score=70.82 Aligned_cols=38 Identities=29% Similarity=0.372 Sum_probs=33.1
Q ss_pred EEEEEccC-CCChHHHHHHHHHHHHhcCCeEEEeecccC
Q psy11993 413 VMAFCGVN-GVGKSTNLAKICFWLIENNLNVLIAACDTF 450 (630)
Q Consensus 413 vi~lvGpN-GvGKTTllakLA~~l~~~ggkVlI~~~Dt~ 450 (630)
+|+|+|+- |+||||++..||..+...+.+|+++++|..
T Consensus 1 ~i~~~~~kgG~Gkst~~~~la~~~~~~~~~vl~~d~d~~ 39 (104)
T cd02042 1 VIAVANQKGGVGKTTTAVNLAAALARRGKRVLLIDLDPQ 39 (104)
T ss_pred CEEEEeCCCCcCHHHHHHHHHHHHHhCCCcEEEEeCCCC
Confidence 36777754 899999999999999888889999999974
No 472
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=98.25 E-value=6.4e-06 Score=85.66 Aligned_cols=41 Identities=27% Similarity=0.384 Sum_probs=37.4
Q ss_pred eEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCc
Q psy11993 412 FVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRA 452 (630)
Q Consensus 412 ~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ 452 (630)
++|+|+|--||||||+...||..+...|.+|+++++|++..
T Consensus 2 ~~iav~gKGGVGKTT~a~nLA~~La~~G~rVllvD~Dpq~~ 42 (273)
T PRK13232 2 RQIAIYGKGGIGKSTTTQNLTAALSTMGNKILLVGCDPKAD 42 (273)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHhhCCCeEEEecccccc
Confidence 47888899999999999999999999999999999998644
No 473
>COG1192 Soj ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=98.24 E-value=9.5e-06 Score=83.45 Aligned_cols=41 Identities=24% Similarity=0.293 Sum_probs=34.9
Q ss_pred CeEEEEEccC-CCChHHHHHHHHHHHH-hcCCeEEEeecccCC
Q psy11993 411 PFVMAFCGVN-GVGKSTNLAKICFWLI-ENNLNVLIAACDTFR 451 (630)
Q Consensus 411 p~vi~lvGpN-GvGKTTllakLA~~l~-~~ggkVlI~~~Dt~R 451 (630)
+.+|+|+..- ||||||+...||+.+. ..+.+|+++++|++.
T Consensus 2 ~~iI~v~n~KGGvGKTT~a~nLa~~La~~~~~kVLliDlDpQ~ 44 (259)
T COG1192 2 MKIIAVANQKGGVGKTTTAVNLAAALAKRGGKKVLLIDLDPQG 44 (259)
T ss_pred CEEEEEEecCCCccHHHHHHHHHHHHHHhcCCcEEEEeCCCcc
Confidence 4678888766 7899999999999998 445899999999964
No 474
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=98.23 E-value=7.9e-06 Score=84.94 Aligned_cols=39 Identities=36% Similarity=0.503 Sum_probs=36.2
Q ss_pred EEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCC
Q psy11993 413 VMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFR 451 (630)
Q Consensus 413 vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R 451 (630)
+|+|.|.-||||||++..||..|...|.+|+++++|+.-
T Consensus 2 ~ia~~gKGGVGKTT~a~nLA~~La~~G~~VlliD~D~q~ 40 (275)
T TIGR01287 2 QIAIYGKGGIGKSTTTQNIAAALAEMGKKVMIVGCDPKA 40 (275)
T ss_pred eeEEeCCCcCcHHHHHHHHHHHHHHCCCeEEEEeCCCCC
Confidence 688899999999999999999999999999999999853
No 475
>PRK13231 nitrogenase reductase-like protein; Reviewed
Probab=98.23 E-value=8e-06 Score=84.39 Aligned_cols=39 Identities=28% Similarity=0.485 Sum_probs=35.6
Q ss_pred eEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCC
Q psy11993 412 FVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFR 451 (630)
Q Consensus 412 ~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R 451 (630)
++|+|+|.-||||||++..||+.+...| +|+++++|+..
T Consensus 3 ~~iav~~KGGvGKTT~a~nLA~~La~~G-rVLliD~Dpq~ 41 (264)
T PRK13231 3 KKIAIYGKGGIGKSTTVSNMAAAYSNDH-RVLVIGCDPKA 41 (264)
T ss_pred eEEEEECCCCCcHHHHHHHHhcccCCCC-EEEEEeEccCc
Confidence 5788889999999999999999998888 99999999853
No 476
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=98.21 E-value=6.6e-06 Score=86.60 Aligned_cols=102 Identities=20% Similarity=0.242 Sum_probs=67.0
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHHhcC--CccCCccchHHHHHHHHHHHHHHHcCCCc--chhhhhhhhhhhccCCCeEE
Q psy11993 339 KDHLIAKNVAADIAVKLCDSVALKLEG--KVLGTFESVANTVKSTLTDALVQILSPKR--RVDILRDALEAKKQGRPFVM 414 (630)
Q Consensus 339 ~~~Li~~~V~~~ia~~l~~~v~~~l~g--~~~~~~~~~~~~v~~~l~~~L~~il~~~~--~~~iL~~i~~~i~~g~p~vi 414 (630)
...|...++.+++|.++...|.+.+.. ....+.+. +.+.+.+.|.+...+.. ..+.++.+- ...+|.+|
T Consensus 23 ~rsL~~~g~~~~~A~~iA~~i~~~L~~~g~~~i~~~e----l~~~V~~~L~~~~~~~~~~~y~~~~~i~---~~~~p~iI 95 (301)
T PRK04220 23 ARSLTAAGMKPSIAYEIASEIEEELKKEGIKEITKEE----LRRRVYYKLIEKDYEEVAEKYLLWRRIR---KSKEPIII 95 (301)
T ss_pred HHHHHHcCCChhHHHHHHHHHHHHHHHcCCEEeeHHH----HHHHHHHHHHHhCcHhHHHHHHHHHHHh---cCCCCEEE
Confidence 456888888888888888888877743 33333343 44444444444443221 133333221 22467899
Q ss_pred EEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCC
Q psy11993 415 AFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFR 451 (630)
Q Consensus 415 ~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R 451 (630)
+|.|++||||||++.+||..+ +.. .++.+|++|
T Consensus 96 lI~G~sgsGKStlA~~La~~l---~~~-~vi~~D~~r 128 (301)
T PRK04220 96 LIGGASGVGTSTIAFELASRL---GIR-SVIGTDSIR 128 (301)
T ss_pred EEECCCCCCHHHHHHHHHHHh---CCC-EEEechHHH
Confidence 999999999999999999888 333 467799976
No 477
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=98.21 E-value=2.1e-06 Score=107.65 Aligned_cols=65 Identities=14% Similarity=0.115 Sum_probs=45.8
Q ss_pred eeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 510 VLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 510 vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
.+...||+++++..++++|.. ...+| .++++|||++|+|..+.. .+.+.+.++.. .+.+.|++|+
T Consensus 806 ~~~tLSGGE~QRV~LAraL~~--~~~~P-~LLILDEPTsGLD~~~~~-~Ll~lL~~L~~----~G~TVIiIsH 870 (1809)
T PRK00635 806 PLSSLSGGEIQRLKLAYELLA--PSKKP-TLYVLDEPTTGLHTHDIK-ALIYVLQSLTH----QGHTVVIIEH 870 (1809)
T ss_pred ccccCCHHHHHHHHHHHHHhh--cCCCC-CEEEEeCCCCCCCHHHHH-HHHHHHHHHHh----cCCEEEEEeC
Confidence 456789999999999999962 12466 567799999999977653 34445554432 2566778777
No 478
>PRK13869 plasmid-partitioning protein RepA; Provisional
Probab=98.20 E-value=2.6e-05 Score=85.99 Aligned_cols=40 Identities=28% Similarity=0.274 Sum_probs=35.7
Q ss_pred eEEEEE-ccCCCChHHHHHHHHHHHHhcCCeEEEeecccCC
Q psy11993 412 FVMAFC-GVNGVGKSTNLAKICFWLIENNLNVLIAACDTFR 451 (630)
Q Consensus 412 ~vi~lv-GpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R 451 (630)
.+|+|+ .--||||||++..||..|...|.+|+++++|+..
T Consensus 122 ~vIav~n~KGGvGKTTta~nLA~~LA~~G~rVLlIDlDpQ~ 162 (405)
T PRK13869 122 QVIAVTNFKGGSGKTTTSAHLAQYLALQGYRVLAVDLDPQA 162 (405)
T ss_pred eEEEEEcCCCCCCHHHHHHHHHHHHHhcCCceEEEcCCCCC
Confidence 678888 4569999999999999999999999999999953
No 479
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.17 E-value=2.2e-05 Score=70.18 Aligned_cols=93 Identities=20% Similarity=0.172 Sum_probs=58.4
Q ss_pred eEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccCCCcCCcchhhhHhhhccCCCCH
Q psy11993 412 FVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHPAAKHGGREMVQLFEKGYGKDP 491 (630)
Q Consensus 412 ~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~~~~~tv~env~l~~~~~~~d~ 491 (630)
..++|+||+|+||||++..||..+......+.+++++........+.. . ............
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-----------------~~~~~~~~~~~~ 63 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLL--L-----------------IIVGGKKASGSG 63 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHH--h-----------------hhhhccCCCCCH
Confidence 689999999999999999999998776667888887765443221111 0 011111111223
Q ss_pred HHHHHHHHHHhhhcCCCeeeeccccchhchHH
Q psy11993 492 AEIAFRAISHARDMHIDVVLIDTAGRMQDNEP 523 (630)
Q Consensus 492 ~~ia~~ai~~a~~~~~D~vlIDTaGr~~~~~~ 523 (630)
.......+..+....++++++|..+.......
T Consensus 64 ~~~~~~~~~~~~~~~~~viiiDei~~~~~~~~ 95 (148)
T smart00382 64 ELRLRLALALARKLKPDVLILDEITSLLDAEQ 95 (148)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCcccCCHHH
Confidence 33344555555555568999999887654433
No 480
>PRK13233 nifH nitrogenase reductase; Reviewed
Probab=98.16 E-value=3.4e-05 Score=80.19 Aligned_cols=41 Identities=27% Similarity=0.378 Sum_probs=37.0
Q ss_pred eEEEEEccCCCChHHHHHHHHHHHHh-cCCeEEEeecccCCc
Q psy11993 412 FVMAFCGVNGVGKSTNLAKICFWLIE-NNLNVLIAACDTFRA 452 (630)
Q Consensus 412 ~vi~lvGpNGvGKTTllakLA~~l~~-~ggkVlI~~~Dt~R~ 452 (630)
.+|+|+|.-||||||++..||+.+.. .|.+|+++++|++-.
T Consensus 3 ~vIav~~KGGVGKTT~a~nLA~~La~~~G~rvLliD~Dpq~~ 44 (275)
T PRK13233 3 RKIAIYGKGGIGKSTTTQNTAAAMAYFHDKKVFIHGCDPKAD 44 (275)
T ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHhcCCeEEEeccCcCcC
Confidence 58888899999999999999999987 599999999999643
No 481
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=98.14 E-value=2e-06 Score=85.41 Aligned_cols=37 Identities=19% Similarity=0.220 Sum_probs=28.1
Q ss_pred hhhhhhccCCCeEEEEEccCCCChHHHHHHHH-HHHHhc
Q psy11993 401 DALEAKKQGRPFVMAFCGVNGVGKSTNLAKIC-FWLIEN 438 (630)
Q Consensus 401 ~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA-~~l~~~ 438 (630)
++++.+..|. ++++|+||||+||||+++.|+ ..+..+
T Consensus 19 ~~~~~i~~~~-~~~~ltG~Ng~GKStll~~i~~~~~~~~ 56 (200)
T cd03280 19 PLDIQLGENK-RVLVITGPNAGGKTVTLKTLGLLTLMAQ 56 (200)
T ss_pred cceEEECCCc-eEEEEECCCCCChHHHHHHHHHHHHHHH
Confidence 3566676652 489999999999999999998 443333
No 482
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.14 E-value=7.4e-06 Score=98.12 Aligned_cols=64 Identities=16% Similarity=0.085 Sum_probs=45.0
Q ss_pred eeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 511 LIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 511 lIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
+-..||++.++..++++|..- ..+| .++++|||++|+|..+.. .+.+.+.++.. .+.+.||+|+
T Consensus 826 ~~tLSgGe~QRl~LA~aL~~~--~~~p-~llILDEPtsgLD~~~~~-~L~~~L~~l~~----~G~TVIvi~H 889 (924)
T TIGR00630 826 ATTLSGGEAQRIKLAKELSKR--STGR-TLYILDEPTTGLHFDDIK-KLLEVLQRLVD----QGNTVVVIEH 889 (924)
T ss_pred cccCCHHHHHHHHHHHHHhhc--CCCC-CEEEEECCCCCCCHHHHH-HHHHHHHHHHh----CCCEEEEEeC
Confidence 556799999999999998721 1235 577799999999987753 34445555532 2567778876
No 483
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=98.11 E-value=9.1e-06 Score=79.31 Aligned_cols=150 Identities=20% Similarity=0.185 Sum_probs=79.5
Q ss_pred EEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHH-HHHHHhhhcccCCCcCCcchhhhHhhhccCCCCH
Q psy11993 413 VMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQ-LRTHVRHLCSLHPAAKHGGREMVQLFEKGYGKDP 491 (630)
Q Consensus 413 vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQ-Lr~~~~~l~~~~~~~~~tv~env~l~~~~~~~d~ 491 (630)
++.|.|.-||||||++..+.. ....+.++.++-+|.-..+--.+ ++.. +.. .+.+....-.-..
T Consensus 2 v~ii~GfLGsGKTTli~~ll~-~~~~~~~~~vI~ne~g~~~iD~~~l~~~----~~~----------v~~l~~gcicc~~ 66 (178)
T PF02492_consen 2 VIIITGFLGSGKTTLINHLLK-RNRQGERVAVIVNEFGEVNIDAELLQED----GVP----------VVELNNGCICCTL 66 (178)
T ss_dssp EEEEEESTTSSHHHHHHHHHH-HHTTTS-EEEEECSTTSTHHHHHHHHTT----T-E----------EEEECTTTESS-T
T ss_pred EEEEEcCCCCCHHHHHHHHHH-HhcCCceeEEEEccccccccchhhhccc----ceE----------EEEecCCCccccc
Confidence 788999999999999999998 66778999999998744432222 1111 110 0111111000000
Q ss_pred HHHHHHHHHH-hhhc--CCCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCccHHHHHHHHHHHHhhccc
Q psy11993 492 AEIAFRAISH-ARDM--HIDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQLVKFNNAMADHSL 568 (630)
Q Consensus 492 ~~ia~~ai~~-a~~~--~~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~Dav~ql~~f~~~l~~~~~ 568 (630)
......++.. .... .+|+++|.++|..... .++..-..+......+.++.|.|+..-.+..+....+...++
T Consensus 67 ~~~~~~~l~~l~~~~~~~~d~IiIE~sG~a~p~-~l~~~~~~~~~~~~~~~iI~vVDa~~~~~~~~~~~~~~~Qi~---- 141 (178)
T PF02492_consen 67 RDDLVEALRRLLREYEERPDRIIIETSGLADPA-PLILQDPPLKEDFRLDSIITVVDATNFDELENIPELLREQIA---- 141 (178)
T ss_dssp TS-HHHHHHHHCCCCHGC-SEEEEEEECSSGGG-GHHHHSHHHHHHESESEEEEEEEGTTHGGHTTHCHHHHHHHC----
T ss_pred HHHHHHHHHHHHHhcCCCcCEEEECCccccccc-hhhhccccccccccccceeEEeccccccccccchhhhhhcch----
Confidence 0001122322 3333 6899999999954432 222222223333456678888888443222222233333332
Q ss_pred CCCCCCeeEEEEcccCCcC
Q psy11993 569 SDNPHLIDGIVLTKFDTID 587 (630)
Q Consensus 569 ~~~~~~i~gIIlTK~D~~~ 587 (630)
.-+.||+||.|.++
T Consensus 142 -----~ADvIvlnK~D~~~ 155 (178)
T PF02492_consen 142 -----FADVIVLNKIDLVS 155 (178)
T ss_dssp -----T-SEEEEE-GGGHH
T ss_pred -----hcCEEEEeccccCC
Confidence 45789999999863
No 484
>PHA02519 plasmid partition protein SopA; Reviewed
Probab=98.11 E-value=2.6e-05 Score=85.36 Aligned_cols=42 Identities=26% Similarity=0.378 Sum_probs=35.9
Q ss_pred CCeEEEEEc-cCCCChHHHHHHHHHHHHhcCCeEEEeec-ccCC
Q psy11993 410 RPFVMAFCG-VNGVGKSTNLAKICFWLIENNLNVLIAAC-DTFR 451 (630)
Q Consensus 410 ~p~vi~lvG-pNGvGKTTllakLA~~l~~~ggkVlI~~~-Dt~R 451 (630)
++.+|+|+. --||||||+...||..+...|.+|+++++ |.+.
T Consensus 105 ~~~vIav~n~KGGVGKTTta~nLA~~LA~~G~rVLlIDl~DpQ~ 148 (387)
T PHA02519 105 NPVVLAVMSHKGGVYKTSSAVHTAQWLALQGHRVLLIEGNDPQG 148 (387)
T ss_pred CceEEEEecCCCCCcHHHHHHHHHHHHHhCCCcEEEEeCCCCCC
Confidence 357888884 45899999999999999999999999996 9754
No 485
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=98.11 E-value=5.3e-05 Score=70.91 Aligned_cols=106 Identities=21% Similarity=0.247 Sum_probs=69.3
Q ss_pred EEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccCCCcCCcchhhhHhhhccCCCCHHHHH
Q psy11993 416 FCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHPAAKHGGREMVQLFEKGYGKDPAEIA 495 (630)
Q Consensus 416 lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~~~~~tv~env~l~~~~~~~d~~~ia 495 (630)
.-|..|+||||+...+|.++...+.+|+++++|.++.. +.
T Consensus 5 ~~~kgg~gkt~~~~~~a~~~~~~~~~~~~vd~D~~~~~--------------------------~~-------------- 44 (139)
T cd02038 5 TSGKGGVGKTNISANLALALAKLGKRVLLLDADLGLAN--------------------------LD-------------- 44 (139)
T ss_pred EcCCCCCcHHHHHHHHHHHHHHCCCcEEEEECCCCCCC--------------------------CC--------------
Confidence 44788999999999999999988889999999973321 00
Q ss_pred HHHHHHhhhcCCCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCccHHHHHHHHHHHHhhcccCCCCCCe
Q psy11993 496 FRAISHARDMHIDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLI 575 (630)
Q Consensus 496 ~~ai~~a~~~~~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i 575 (630)
||++++|++++..... ...+ ...|.++++.++... .+..+..+-+.+.+.. ....
T Consensus 45 -----------yd~VIiD~p~~~~~~~--~~~l------~~aD~vviv~~~~~~--s~~~~~~~l~~l~~~~----~~~~ 99 (139)
T cd02038 45 -----------YDYIIIDTGAGISDNV--LDFF------LAADEVIVVTTPEPT--SITDAYALIKKLAKQL----RVLN 99 (139)
T ss_pred -----------CCEEEEECCCCCCHHH--HHHH------HhCCeEEEEcCCChh--HHHHHHHHHHHHHHhc----CCCC
Confidence 8999999998764332 2222 234778888888532 2222222222332211 1234
Q ss_pred eEEEEcccCCc
Q psy11993 576 DGIVLTKFDTI 586 (630)
Q Consensus 576 ~gIIlTK~D~~ 586 (630)
.++|+|+++..
T Consensus 100 ~~lVvN~~~~~ 110 (139)
T cd02038 100 FRVVVNRAESP 110 (139)
T ss_pred EEEEEeCCCCH
Confidence 57999999753
No 486
>PRK13236 nitrogenase reductase; Reviewed
Probab=98.10 E-value=2.5e-05 Score=82.46 Aligned_cols=41 Identities=32% Similarity=0.436 Sum_probs=38.1
Q ss_pred eEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCc
Q psy11993 412 FVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRA 452 (630)
Q Consensus 412 ~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ 452 (630)
++++|.|--||||||+...||..|...|.+|+++++|+.-.
T Consensus 7 ~~~~~~GKGGVGKTt~a~NLA~~La~~G~rVLliD~D~q~~ 47 (296)
T PRK13236 7 RQIAFYGKGGIGKSTTSQNTLAAMAEMGQRILIVGCDPKAD 47 (296)
T ss_pred eEEEEECCCcCCHHHHHHHHHHHHHHCCCcEEEEEccCCCC
Confidence 68999999999999999999999999999999999998543
No 487
>TIGR03453 partition_RepA plasmid partitioning protein RepA. Members of this family are the RepA (or ParA) protein involved in replicon partitioning. All known examples occur in bacterial species with two or more replicons, on a plasmid or the smaller chromosome. Note that an apparent exception may be seen as a pseudomolecule from assembly of an incompletely sequenced genome. Members of this family belong to a larger family that also includes the enzyme cobyrinic acid a,c-diamide synthase, but assignment of that name to members of this family would be in error.
Probab=98.10 E-value=4.6e-05 Score=83.44 Aligned_cols=41 Identities=27% Similarity=0.246 Sum_probs=35.6
Q ss_pred CeEEEEE-ccCCCChHHHHHHHHHHHHhcCCeEEEeecccCC
Q psy11993 411 PFVMAFC-GVNGVGKSTNLAKICFWLIENNLNVLIAACDTFR 451 (630)
Q Consensus 411 p~vi~lv-GpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R 451 (630)
+.+|+|+ .--||||||++..||..+...|.+|+++++|...
T Consensus 104 ~~vI~v~n~KGGvGKTT~a~nLA~~La~~G~rVLlID~DpQ~ 145 (387)
T TIGR03453 104 LQVIAVTNFKGGSGKTTTAAHLAQYLALRGYRVLAIDLDPQA 145 (387)
T ss_pred ceEEEEEccCCCcCHHHHHHHHHHHHHhcCCCEEEEecCCCC
Confidence 3678887 5558999999999999999899999999999854
No 488
>PRK10037 cell division protein; Provisional
Probab=98.08 E-value=4.4e-05 Score=78.37 Aligned_cols=39 Identities=21% Similarity=0.202 Sum_probs=33.4
Q ss_pred EEEEE-ccCCCChHHHHHHHHHHHHhcCCeEEEeecccCC
Q psy11993 413 VMAFC-GVNGVGKSTNLAKICFWLIENNLNVLIAACDTFR 451 (630)
Q Consensus 413 vi~lv-GpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R 451 (630)
+|+++ .--||||||++..||..+...|.+|+++++|...
T Consensus 3 ~iav~n~KGGvGKTT~a~nLA~~La~~G~rVLlID~D~q~ 42 (250)
T PRK10037 3 ILGLQGVRGGVGTTSITAALAWSLQMLGENVLVIDACPDN 42 (250)
T ss_pred EEEEecCCCCccHHHHHHHHHHHHHhcCCcEEEEeCChhh
Confidence 55565 3459999999999999999999999999999853
No 489
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.07 E-value=1.3e-05 Score=80.25 Aligned_cols=37 Identities=27% Similarity=0.214 Sum_probs=31.7
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHH
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWL 435 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l 435 (630)
.+..++++....| ++++|+||||+||||+++.|++..
T Consensus 17 ~v~~~~~~~~~~~--~~~~l~G~n~~GKstll~~i~~~~ 53 (204)
T cd03282 17 FIPNDIYLTRGSS--RFHIITGPNMSGKSTYLKQIALLA 53 (204)
T ss_pred EEEeeeEEeeCCC--cEEEEECCCCCCHHHHHHHHHHHH
Confidence 3566788887777 899999999999999999999764
No 490
>KOG0060|consensus
Probab=98.07 E-value=1.1e-05 Score=90.04 Aligned_cols=146 Identities=14% Similarity=0.126 Sum_probs=89.3
Q ss_pred HcCCCcchhhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhccc
Q psy11993 389 ILSPKRRVDILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSL 468 (630)
Q Consensus 389 il~~~~~~~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~ 468 (630)
+-+|+...-++++++|.+++| ..+.|+||||||||.+++.|+++-...+|++.--.- .+.. -.-.++|.
T Consensus 441 l~tPt~g~~lie~Ls~~V~~g--~~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~~~----~~~~-----~lfflPQr 509 (659)
T KOG0060|consen 441 LSTPTNGDLLIENLSLEVPSG--QNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTD----GGPK-----DLFFLPQR 509 (659)
T ss_pred ecCCCCCceeeeeeeeEecCC--CeEEEECCCCCchhHHHHHHhcccccCCCeEEeccc----CCCC-----ceEEecCC
Confidence 445664444666799999999 899999999999999999999988767777644321 1100 01123443
Q ss_pred CCCcCCcchhhhHhhhcc-----CCCCHHHHHHHHHHHh-------hhcCCC--ee--eecc-ccchhchHHHHHHHHhh
Q psy11993 469 HPAAKHGGREMVQLFEKG-----YGKDPAEIAFRAISHA-------RDMHID--VV--LIDT-AGRMQDNEPLMRALAKL 531 (630)
Q Consensus 469 ~~~~~~tv~env~l~~~~-----~~~d~~~ia~~ai~~a-------~~~~~D--~v--lIDT-aGr~~~~~~L~~aL~kl 531 (630)
++++..|.++-|.+..+. .+.+... ..+.++.+ +..++| ++ ..|+ |||.+|+...+|-+-
T Consensus 510 PYmt~GTLRdQvIYP~~~~~~~~~~~~d~~-i~r~Le~v~L~hl~~r~ggld~~~~~dW~dvLS~GEqQRLa~ARLfy-- 586 (659)
T KOG0060|consen 510 PYMTLGTLRDQVIYPLKAEDMDSKSASDED-ILRILENVQLGHLLEREGGLDQQVDWDWMDVLSPGEQQRLAFARLFY-- 586 (659)
T ss_pred CCccccchhheeeccCccccccccCCCHHH-HHHHHHHhhhhhHHHHhCCCCchhhccHHhhcCHHHHHHHHHHHHHh--
Confidence 334444555555332110 1111111 22333332 234455 33 3344 999999999988887
Q ss_pred hhhcCCCeEEEEeccccCccH
Q psy11993 532 VKVNQPDLLLFVGEALVGNEA 552 (630)
Q Consensus 532 ~~~~~Pd~VLlV~E~~~g~Da 552 (630)
.+|. +-++||+|++.+.
T Consensus 587 ---~kPk-~AiLDE~TSAv~~ 603 (659)
T KOG0060|consen 587 ---HKPK-FAILDECTSAVTE 603 (659)
T ss_pred ---cCCc-eEEeechhhhccH
Confidence 8894 4458999987754
No 491
>PRK13705 plasmid-partitioning protein SopA; Provisional
Probab=98.06 E-value=3.7e-05 Score=84.26 Aligned_cols=43 Identities=23% Similarity=0.196 Sum_probs=36.5
Q ss_pred CCeEEEEE-ccCCCChHHHHHHHHHHHHhcCCeEEEeec-ccCCc
Q psy11993 410 RPFVMAFC-GVNGVGKSTNLAKICFWLIENNLNVLIAAC-DTFRA 452 (630)
Q Consensus 410 ~p~vi~lv-GpNGvGKTTllakLA~~l~~~ggkVlI~~~-Dt~R~ 452 (630)
++.+|+|+ .--||||||++..||..+...|.+|+++++ |.+..
T Consensus 105 ~~~vIai~n~KGGVGKTT~a~nLA~~LA~~G~rVLlID~~DpQ~n 149 (388)
T PRK13705 105 FPPVIGVAAHKGGVYKTSVSVHLAQDLALKGLRVLLVEGNDPQGT 149 (388)
T ss_pred CCeEEEEECCCCCchHHHHHHHHHHHHHhcCCCeEEEcCCCCCCc
Confidence 34788888 456999999999999999999999999996 98543
No 492
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=98.06 E-value=2.1e-06 Score=94.84 Aligned_cols=59 Identities=25% Similarity=0.264 Sum_probs=47.6
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCC-eEEEeecccCCcc--HHHHHH
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNL-NVLIAACDTFRAG--AVEQLR 459 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~gg-kVlI~~~Dt~R~g--a~eQLr 459 (630)
.+|++|++.+.+| ++++||||+||||||+++ ++...+..| +|.+.+.+.+.+. +.+.||
T Consensus 20 ~vL~~Vsl~i~~G--Eiv~L~G~SGsGKSTLLr--~~l~~~~sGg~I~ldg~~~~~~~~~ai~~LR 81 (504)
T TIGR03238 20 RILVKFNKELPSS--SLLFLCGSSGDGKSEILA--ENKRKFSEGYEFFLDATHSFSPNKNAMETLD 81 (504)
T ss_pred HHHhCCceeecCC--CEEEEECCCCCCHHHHHh--cCCCCCCCCCEEEECCEECCCCCHHHHHHHH
Confidence 4577889999999 999999999999999999 556666655 8999999997653 444554
No 493
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=98.05 E-value=6.7e-05 Score=67.10 Aligned_cols=38 Identities=29% Similarity=0.343 Sum_probs=32.4
Q ss_pred EEEE-ccCCCChHHHHHHHHHHHHhc-CCeEEEeecccCC
Q psy11993 414 MAFC-GVNGVGKSTNLAKICFWLIEN-NLNVLIAACDTFR 451 (630)
Q Consensus 414 i~lv-GpNGvGKTTllakLA~~l~~~-ggkVlI~~~Dt~R 451 (630)
|+++ +-.|+||||+...||..+... +.+|+++++|+.+
T Consensus 2 i~~~~~kgg~gkt~~~~~la~~~~~~~~~~~~l~d~d~~~ 41 (106)
T cd03111 2 IAFIGAKGGVGATTLAANLAVALAKEAGRRVLLVDLDLQF 41 (106)
T ss_pred EEEECCCCCCcHHHHHHHHHHHHHhcCCCcEEEEECCCCC
Confidence 4444 557999999999999999887 8999999999854
No 494
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=98.05 E-value=2.1e-05 Score=71.74 Aligned_cols=97 Identities=21% Similarity=0.185 Sum_probs=58.6
Q ss_pred EEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccCCCcCCcchhhhHh-hhccCCCCHH
Q psy11993 414 MAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHPAAKHGGREMVQL-FEKGYGKDPA 492 (630)
Q Consensus 414 i~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~~~~~tv~env~l-~~~~~~~d~~ 492 (630)
++|.|..|+||||+...|+.++...+.+|+++++|+ .+....+.......... -..+. ..+ ....|... .
T Consensus 2 i~~~GkgG~GKTt~a~~la~~l~~~g~~V~~id~D~-----~~~~~~~~~~~~~~~~~-i~~g~--~~~~~~g~~~~~-n 72 (116)
T cd02034 2 IAITGKGGVGKTTIAALLARYLAEKGKPVLAIDADP-----DDLPERLSVEVGEIKLL-LVMGM--GRPGGEGCYCPE-N 72 (116)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEECCc-----hhhHHHHhhccCCceEE-EEecc--cccCCCCCEehh-h
Confidence 789999999999999999999988889999999998 11222222111100000 00000 000 01112111 1
Q ss_pred HHHHHHHHHhhhcCCCeeeeccccchh
Q psy11993 493 EIAFRAISHARDMHIDVVLIDTAGRMQ 519 (630)
Q Consensus 493 ~ia~~ai~~a~~~~~D~vlIDTaGr~~ 519 (630)
....+.+..+...++|++++||.+++.
T Consensus 73 ~~~~~~l~~~~~~~~~~vivDt~ag~e 99 (116)
T cd02034 73 ALLNALLRHLVLTRDEQVVVDTEAGLE 99 (116)
T ss_pred HHHHHHHHHeEccCCCEEEEecHHHHH
Confidence 245566666666789999999988763
No 495
>COG0455 flhG Antiactivator of flagellar biosynthesis FleN, an ATPase [Cell motility]
Probab=98.03 E-value=0.00016 Score=75.09 Aligned_cols=180 Identities=18% Similarity=0.177 Sum_probs=92.3
Q ss_pred CeEEEEE-ccCCCChHHHHHHHHH-HHHhcCCeEEEeecccCCccHHHHHHH------HHhhhcccCCC---cCCcchhh
Q psy11993 411 PFVMAFC-GVNGVGKSTNLAKICF-WLIENNLNVLIAACDTFRAGAVEQLRT------HVRHLCSLHPA---AKHGGREM 479 (630)
Q Consensus 411 p~vi~lv-GpNGvGKTTllakLA~-~l~~~ggkVlI~~~Dt~R~ga~eQLr~------~~~~l~~~~~~---~~~tv~en 479 (630)
.++|+++ |-=|+||||+.++|+. .+...+.+|+++++|+...+-.-.+.. ....+.....+ ..++...+
T Consensus 2 ~~~Iav~SgKGGvGKTtitanlga~~~~~~~k~V~~iDaD~g~~nL~~~~g~~~~~~~l~dvL~~~~~~~Di~~~~~~~g 81 (262)
T COG0455 2 TKVIAVVSGKGGVGKTTITANLGAALAALGGKVVLLIDADLGLGNLSLLLGVESKPTTLHDVLAGEASIEDIIYETPQDG 81 (262)
T ss_pred CEEEEEEecCCCccHHHHHHhHHHHHHhhCCCeEEEEecCCCCCcHHHHhCCCCCcccHHHHHhCCCCHhHeeeecCcCC
Confidence 3688888 9999999999999954 555555667999999854332111100 11111111111 11233245
Q ss_pred hHhhhccCCC------CHHHHHHHHHHHhhhcCCCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCccHH
Q psy11993 480 VQLFEKGYGK------DPAEIAFRAISHARDMHIDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAV 553 (630)
Q Consensus 480 v~l~~~~~~~------d~~~ia~~ai~~a~~~~~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~Dav 553 (630)
|.++..+.+. ++. ....++..+.. .+|++++||+++...+. +..+. .. |.+++|..|... ++
T Consensus 82 l~vipg~~~~~~~~~~~~~-~~~~~~~~l~~-~~D~iliD~~aGl~~~~--~~~~~-----~s-d~~viVt~pe~~--si 149 (262)
T COG0455 82 LYVLPGGSGLEDLAKLDPE-DLEDVIKELEE-LYDYILIDTGAGLSRDT--LSFIL-----SS-DELVIVTTPEPT--SI 149 (262)
T ss_pred EEEeeCCCChHHHhhcCHH-HHHHHHHHHHh-cCCEEEEeCCCCccHHH--HHHHH-----hc-CcEEEEeCCCcc--hH
Confidence 5555433321 222 12334444443 35999999999886544 33333 22 667777776432 22
Q ss_pred HHHHHHHHHHhhcccCCCCCCeeE--EEEcccCCcCccHHH---HHHHHHHhCCcEEEEe
Q psy11993 554 DQLVKFNNAMADHSLSDNPHLIDG--IVLTKFDTIDDKVGA---AISMTYITGQPIVFVG 608 (630)
Q Consensus 554 ~ql~~f~~~l~~~~~~~~~~~i~g--IIlTK~D~~~~~~G~---~ls~~~~~g~PI~fvg 608 (630)
..+-.+-+.+..+. ....+ +|+++++...+..-. +..++... .++.|++
T Consensus 150 ~~A~~~i~~~~~~~-----~~~~~~~vV~N~v~~~~e~~~~~~~~~~~~~~~-~~~~~i~ 203 (262)
T COG0455 150 TDAYKTIKILSKLG-----LDLLGRRVVLNRVRSTKEGVDVAALLIQVVKQV-PVLQVIP 203 (262)
T ss_pred HHHHHHHHHHHHcC-----CccccceEEEEecccccchhHHHHHHHHHHHhC-CceeEec
Confidence 22223333333221 13334 999999733222222 22233332 3666665
No 496
>TIGR03815 CpaE_hom_Actino helicase/secretion neighborhood CpaE-like protein. Members of this protein family belong to the MinD/ParA family of P-loop NTPases, and in particular show homology to the CpaE family of pilus assembly proteins (see PubMed:12370432). Nearly all members are found, not only in a gene context consistent with pilus biogenesis or a pilus-like secretion apparatus, but also near a DEAD/DEAH-box helicase, suggesting an involvement in DNA transfer activity. The model describes a clade restricted to the Actinobacteria.
Probab=98.02 E-value=0.00023 Score=75.95 Aligned_cols=173 Identities=21% Similarity=0.234 Sum_probs=91.2
Q ss_pred eEEEEEc-cCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHH-------HHhhh---cccCC--C-cCCcch
Q psy11993 412 FVMAFCG-VNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRT-------HVRHL---CSLHP--A-AKHGGR 477 (630)
Q Consensus 412 ~vi~lvG-pNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~-------~~~~l---~~~~~--~-~~~tv~ 477 (630)
++|+|+| .-||||||+...||..+...+.+|+++++|.+..+....|.. +.... +.... . ..+...
T Consensus 94 ~vIav~~~KGGvGkTT~a~nLA~~la~~g~~VlLvD~D~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 173 (322)
T TIGR03815 94 VVVAVIGGRGGAGASTLAAALALAAARHGLRTLLVDADPWGGGLDLLLGAEDVPGLRWPDLSQARGRLPAGALRDALPRR 173 (322)
T ss_pred eEEEEEcCCCCCcHHHHHHHHHHHHHhcCCCEEEEecCCCCCCeeeeecCCCCCCcCHHHHhhcCCCcCHHHHHHhCCCc
Confidence 8999997 558999999999999998888899999999865432111100 00000 00000 0 000001
Q ss_pred hhhHhhhccC----CCCHHHHHHHHHHHhhhcCCCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCccHH
Q psy11993 478 EMVQLFEKGY----GKDPAEIAFRAISHARDMHIDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAV 553 (630)
Q Consensus 478 env~l~~~~~----~~d~~~ia~~ai~~a~~~~~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~Dav 553 (630)
+++.++.... ..++ ......++.+. ..||+|+|||++..... ....|. ..|.+++|.++.. .++
T Consensus 174 ~~l~vl~~~~~~~~~~~~-~~l~~~l~~l~-~~~D~VIID~p~~~~~~--~~~~L~------~AD~vliV~~~~~--~sl 241 (322)
T TIGR03815 174 GGLSVLSWGRAVGAALPP-AAVRAVLDAAR-RGGDLVVVDLPRRLTPA--AETALE------SADLVLVVVPADV--RAV 241 (322)
T ss_pred CCeEEEecCCCCcCCCCH-HHHHHHHHHHH-hcCCEEEEeCCCCCCHH--HHHHHH------HCCEEEEEcCCcH--HHH
Confidence 2233222111 1122 23344555544 46999999999886432 222232 4477888887743 334
Q ss_pred HHHHHHHHHHhhcccCCCCCCeeEEEEcccCCcCccHHHHHHHHHHhCCcEE
Q psy11993 554 DQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTIDDKVGAAISMTYITGQPIV 605 (630)
Q Consensus 554 ~ql~~f~~~l~~~~~~~~~~~i~gIIlTK~D~~~~~~G~~ls~~~~~g~PI~ 605 (630)
..+..+.+.+.+.. + .+ .+|++..... .. ..-.+....|.|+.
T Consensus 242 ~~a~r~l~~l~~~~----~-~~-~lVv~~~~~~--~~-~~~~i~~~lg~~v~ 284 (322)
T TIGR03815 242 AAAARVCPELGRRN----P-DL-RLVVRGPAPA--GL-DPEEIAESLGLPLL 284 (322)
T ss_pred HHHHHHHHHHhhhC----C-Ce-EEEEeCCCCC--CC-CHHHHHHHhCCCce
Confidence 44444444444321 1 22 4566653321 11 12345556777775
No 497
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=98.02 E-value=6.7e-06 Score=81.73 Aligned_cols=28 Identities=32% Similarity=0.273 Sum_probs=24.2
Q ss_pred hhccCCCeEEEEEccCCCChHHHHHHHHHH
Q psy11993 405 AKKQGRPFVMAFCGVNGVGKSTNLAKICFW 434 (630)
Q Consensus 405 ~i~~g~p~vi~lvGpNGvGKTTllakLA~~ 434 (630)
.+..| ++++|+||||+||||+++.|+..
T Consensus 25 ~l~~~--~~~~l~G~Ng~GKStll~~i~~~ 52 (202)
T cd03243 25 NLGSG--RLLLITGPNMGGKSTYLRSIGLA 52 (202)
T ss_pred EEcCC--eEEEEECCCCCccHHHHHHHHHH
Confidence 44556 89999999999999999999954
No 498
>COG1341 Predicted GTPase or GTP-binding protein [General function prediction only]
Probab=98.00 E-value=1.4e-05 Score=86.38 Aligned_cols=128 Identities=22% Similarity=0.240 Sum_probs=75.0
Q ss_pred CCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCcc-----HHH--HHHHHHhhhcccCCCcCCcchhhhHh
Q psy11993 410 RPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAG-----AVE--QLRTHVRHLCSLHPAAKHGGREMVQL 482 (630)
Q Consensus 410 ~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~g-----a~e--QLr~~~~~l~~~~~~~~~tv~env~l 482 (630)
.+.++++|||.+|||||+++-|+..+...+.+|.|++.|+-++. .+. ....+...+.+..+ .. ..|
T Consensus 72 ~~~~vmvvG~vDSGKSTLt~~LaN~~l~rG~~v~iiDaDvGQ~ei~pPg~ISL~~~~s~~~~L~~l~~------~~-~~F 144 (398)
T COG1341 72 KVGVVMVVGPVDSGKSTLTTYLANKLLARGRKVAIIDADVGQSEIGPPGFISLAFPESPVISLSELEP------FT-LYF 144 (398)
T ss_pred CCcEEEEECCcCcCHHHHHHHHHHHHhhcCceEEEEeCCCCCcccCCCceEEeecccCCCCCHHHcCc------cc-eEE
Confidence 44699999999999999999999999999999999999974321 110 00000000000000 00 001
Q ss_pred hhc-cCCCCHHHH---HHHHHHHhhhcCCCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEecc
Q psy11993 483 FEK-GYGKDPAEI---AFRAISHARDMHIDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEA 546 (630)
Q Consensus 483 ~~~-~~~~d~~~i---a~~ai~~a~~~~~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~ 546 (630)
... .....+... +.++.+.+... .|+++|||+|.-..... |.-+..++...+|+.|+++..+
T Consensus 145 vG~isP~~~~~~~i~~v~rL~~~a~~~-~~~ilIdT~GWi~G~~g-~elk~~li~~ikP~~Ii~l~~~ 210 (398)
T COG1341 145 VGSISPQGFPGRYIAGVARLVDLAKKE-ADFILIDTDGWIKGWGG-LELKRALIDAIKPDLIIALERA 210 (398)
T ss_pred EeccCCCCChHHHHHHHHHHHHHhhcc-CCEEEEcCCCceeCchH-HHHHHHHHhhcCCCEEEEeccc
Confidence 111 111222222 34455555543 68999999997654222 2334445567899999987665
No 499
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=98.00 E-value=4.3e-05 Score=73.38 Aligned_cols=121 Identities=21% Similarity=0.180 Sum_probs=72.4
Q ss_pred eEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccCCCcCCcchhhhHhhhccCCCCH
Q psy11993 412 FVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHPAAKHGGREMVQLFEKGYGKDP 491 (630)
Q Consensus 412 ~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~~~~~tv~env~l~~~~~~~d~ 491 (630)
.+++|+||||+||||++..++..+....+++.. ..+. ..+...+.. . +.+
T Consensus 22 ~~~~i~G~NgsGKS~~l~~i~~~~~~~~~~~~~-~~~~--------------~~g~~~~~~--~----~~~--------- 71 (162)
T cd03227 22 SLTIITGPNGSGKSTILDAIGLALGGAQSATRR-RSGV--------------KAGCIVAAV--S----AEL--------- 71 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHhcchhhhc-cCcc--------------cCCCcceee--E----EEE---------
Confidence 699999999999999999999877655444433 1110 011000000 0 000
Q ss_pred HHHHHHHHHHhhhcCCCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCccHHHHHHHHHHHHhhcccCCC
Q psy11993 492 AEIAFRAISHARDMHIDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQLVKFNNAMADHSLSDN 571 (630)
Q Consensus 492 ~~ia~~ai~~a~~~~~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~Dav~ql~~f~~~l~~~~~~~~ 571 (630)
=...+..++++++...++++|... ....| .++++|||+.|.|..+... +.+.+.++...
T Consensus 72 ----------------i~~~~~lS~G~~~~~~la~~L~~~-~~~~~-~llllDEp~~gld~~~~~~-l~~~l~~~~~~-- 130 (162)
T cd03227 72 ----------------IFTRLQLSGGEKELSALALILALA-SLKPR-PLYILDEIDRGLDPRDGQA-LAEAILEHLVK-- 130 (162)
T ss_pred ----------------ehheeeccccHHHHHHHHHHHHhc-CCCCC-CEEEEeCCCCCCCHHHHHH-HHHHHHHHHhc--
Confidence 011234788888888888887721 11245 5666999999999887543 44445544321
Q ss_pred CCCeeEEEEcccCC
Q psy11993 572 PHLIDGIVLTKFDT 585 (630)
Q Consensus 572 ~~~i~gIIlTK~D~ 585 (630)
+...++.|+..+
T Consensus 131 --~~~vii~TH~~~ 142 (162)
T cd03227 131 --GAQVIVITHLPE 142 (162)
T ss_pred --CCEEEEEcCCHH
Confidence 456788887543
No 500
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=98.00 E-value=1.6e-05 Score=80.04 Aligned_cols=91 Identities=10% Similarity=0.073 Sum_probs=50.2
Q ss_pred eeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcccCCcCcc
Q psy11993 510 VLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTIDDK 589 (630)
Q Consensus 510 vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK~D~~~~~ 589 (630)
-.-++|+++++...++..|+ ...+.+| .++++|||+.++|...... +.+.+.++... ....+.+++|.-...
T Consensus 123 ~~~~LS~G~~q~~~i~~~la-~~~~~~p-~llllDEP~~~LD~~~~~~-i~~~l~~~~~~--~g~~~viiith~~~~--- 194 (213)
T cd03277 123 DPHHQSGGERSVSTMLYLLS-LQELTRC-PFRVVDEINQGMDPTNERK-VFDMLVETACK--EGTSQYFLITPKLLP--- 194 (213)
T ss_pred chhhccccHHHHHHHHHHHH-HHhccCC-CEEEEecccccCCHHHHHH-HHHHHHHHhhc--CCCceEEEEchhhcc---
Confidence 35578999987544443332 1122567 4677999999999877544 44455544321 012356777752211
Q ss_pred HHHHHHHHHHhCCcEEEEecCCCC
Q psy11993 590 VGAAISMTYITGQPIVFVGTGQTY 613 (630)
Q Consensus 590 ~G~~ls~~~~~g~PI~fvg~Gq~v 613 (630)
.+..+ ...-|.++..|+++
T Consensus 195 ---~~~~~--~~~~v~~l~~g~~~ 213 (213)
T cd03277 195 ---GLNYH--EKMTVLCVYNGPHI 213 (213)
T ss_pred ---CCccc--CceEEEEEecCccC
Confidence 11111 11257788888764
Done!