Query psy11993
Match_columns 630
No_of_seqs 379 out of 2838
Neff 6.5
Searched_HMMs 29240
Date Fri Aug 16 15:53:11 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11993.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/11993hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2fh5_A Signal recognition part 100.0 8.2E-48 2.8E-52 370.5 14.4 154 1-156 10-167 (185)
2 3e70_C DPA, signal recognition 100.0 2.9E-41 1E-45 357.3 28.3 286 318-630 39-324 (328)
3 3dm5_A SRP54, signal recogniti 100.0 5.9E-41 2E-45 366.3 30.9 288 311-630 8-295 (443)
4 3kl4_A SRP54, signal recogniti 100.0 4.1E-40 1.4E-44 359.5 29.4 290 310-630 3-294 (433)
5 2ffh_A Protein (FFH); SRP54, s 100.0 1.5E-38 5.2E-43 346.6 30.3 287 311-630 7-293 (425)
6 1j8m_F SRP54, signal recogniti 100.0 1.7E-38 6E-43 331.8 28.6 288 311-630 5-295 (297)
7 2yhs_A FTSY, cell division pro 100.0 8.7E-39 3E-43 352.1 25.4 275 317-630 214-494 (503)
8 1zu4_A FTSY; GTPase, signal re 100.0 1.1E-38 3.8E-43 336.5 24.6 288 310-630 15-310 (320)
9 1vma_A Cell division protein F 100.0 5.2E-38 1.8E-42 329.4 27.4 272 311-630 28-305 (306)
10 3b9q_A Chloroplast SRP recepto 100.0 1.8E-37 6.3E-42 324.8 28.4 283 311-630 12-302 (302)
11 2og2_A Putative signal recogni 100.0 2.4E-37 8.1E-42 330.7 29.2 273 322-630 80-359 (359)
12 1ls1_A Signal recognition part 100.0 1.8E-36 6.1E-41 316.3 29.3 287 311-630 7-293 (295)
13 1rj9_A FTSY, signal recognitio 100.0 4E-37 1.4E-41 322.5 23.7 283 312-630 10-303 (304)
14 2xxa_A Signal recognition part 100.0 6.2E-36 2.1E-40 327.5 29.9 289 311-630 7-296 (433)
15 2v3c_C SRP54, signal recogniti 100.0 7.7E-34 2.6E-38 310.8 24.1 286 311-630 6-294 (432)
16 2j37_W Signal recognition part 100.0 1.2E-33 4E-38 314.1 24.0 287 312-629 9-295 (504)
17 2px0_A Flagellar biosynthesis 100.0 1.7E-31 5.9E-36 278.7 21.2 260 327-630 34-296 (296)
18 3tif_A Uncharacterized ABC tra 99.8 9.1E-19 3.1E-23 176.6 10.3 195 397-614 19-225 (235)
19 3gfo_A Cobalt import ATP-bindi 99.8 7.3E-19 2.5E-23 181.5 9.3 174 397-582 22-202 (275)
20 3tui_C Methionine import ATP-b 99.8 1.4E-18 4.7E-23 185.7 9.9 196 396-613 41-243 (366)
21 1g6h_A High-affinity branched- 99.8 1.7E-18 5.9E-23 176.8 10.3 173 397-582 21-211 (257)
22 2pcj_A ABC transporter, lipopr 99.7 2E-18 6.8E-23 172.8 10.0 173 397-582 18-198 (224)
23 1b0u_A Histidine permease; ABC 99.7 2.7E-18 9.2E-23 175.9 10.1 194 397-613 20-232 (262)
24 4g1u_C Hemin import ATP-bindin 99.7 3.4E-18 1.1E-22 175.7 10.7 200 396-613 24-227 (266)
25 2olj_A Amino acid ABC transpor 99.7 3.2E-18 1.1E-22 175.6 10.5 194 397-613 38-238 (263)
26 3fvq_A Fe(3+) IONS import ATP- 99.7 1.8E-18 6.1E-23 184.6 7.4 175 396-582 17-197 (359)
27 1vpl_A ABC transporter, ATP-bi 99.7 2.7E-18 9.1E-23 175.5 8.3 171 397-582 29-204 (256)
28 1ji0_A ABC transporter; ATP bi 99.7 3.7E-18 1.3E-22 172.6 8.9 194 397-613 20-218 (240)
29 3rlf_A Maltose/maltodextrin im 99.7 2.2E-18 7.5E-23 185.2 7.3 172 396-582 16-192 (381)
30 3d31_A Sulfate/molybdate ABC t 99.7 3.8E-18 1.3E-22 181.6 6.4 170 398-582 15-186 (348)
31 1z47_A CYSA, putative ABC-tran 99.7 5.8E-18 2E-22 180.5 7.2 172 396-582 28-204 (355)
32 2it1_A 362AA long hypothetical 99.7 7.5E-18 2.6E-22 180.2 7.3 171 397-582 17-192 (362)
33 2yyz_A Sugar ABC transporter, 99.7 6.4E-18 2.2E-22 180.5 6.3 171 397-582 17-192 (359)
34 1v43_A Sugar-binding transport 99.7 8.5E-18 2.9E-22 180.4 6.9 171 397-582 25-200 (372)
35 1sgw_A Putative ABC transporte 99.7 3.4E-18 1.2E-22 170.2 2.9 166 397-582 23-191 (214)
36 1g29_1 MALK, maltose transport 99.7 9.8E-18 3.4E-22 180.0 6.5 171 397-582 17-198 (372)
37 2d2e_A SUFC protein; ABC-ATPas 99.7 3.8E-17 1.3E-21 166.2 10.4 173 397-582 17-201 (250)
38 2yz2_A Putative ABC transporte 99.7 9.2E-18 3.1E-22 172.3 5.7 169 397-582 21-196 (266)
39 2ff7_A Alpha-hemolysin translo 99.7 1.3E-17 4.6E-22 169.3 6.8 168 397-582 23-202 (247)
40 3nh6_A ATP-binding cassette SU 99.7 9E-18 3.1E-22 175.8 5.5 189 396-613 67-267 (306)
41 2qi9_C Vitamin B12 import ATP- 99.7 2.2E-17 7.4E-22 168.1 8.1 191 397-613 14-212 (249)
42 1oxx_K GLCV, glucose, ABC tran 99.7 6.4E-18 2.2E-22 180.3 3.5 170 398-582 20-199 (353)
43 2ixe_A Antigen peptide transpo 99.7 4.5E-17 1.5E-21 167.7 8.7 172 397-582 33-215 (271)
44 2zu0_C Probable ATP-dependent 99.7 2.7E-16 9.2E-21 161.5 11.1 173 397-582 34-222 (267)
45 2ihy_A ABC transporter, ATP-bi 99.7 5.9E-17 2E-21 167.5 6.0 172 397-582 35-221 (279)
46 2ghi_A Transport protein; mult 99.6 7.7E-17 2.6E-21 164.9 6.6 167 397-582 34-212 (260)
47 2pjz_A Hypothetical protein ST 99.6 6.4E-17 2.2E-21 165.9 5.2 162 397-582 19-183 (263)
48 1mv5_A LMRA, multidrug resista 99.6 2.4E-17 8.3E-22 166.9 1.6 189 397-613 16-216 (243)
49 2nq2_C Hypothetical ABC transp 99.6 9.3E-17 3.2E-21 163.7 5.1 179 397-611 19-206 (253)
50 3gd7_A Fusion complex of cysti 99.6 1.1E-16 3.8E-21 172.7 5.6 167 396-582 34-212 (390)
51 2onk_A Molybdate/tungstate ABC 99.6 6.7E-17 2.3E-21 163.6 3.6 190 398-613 14-206 (240)
52 2cbz_A Multidrug resistance-as 99.6 2.1E-16 7.3E-21 159.4 5.5 160 397-582 19-187 (237)
53 2yl4_A ATP-binding cassette SU 99.6 4.2E-16 1.4E-20 177.0 8.0 170 397-582 358-540 (595)
54 3b5x_A Lipid A export ATP-bind 99.6 9.9E-16 3.4E-20 173.5 8.5 170 396-582 356-537 (582)
55 3qf4_A ABC transporter, ATP-bi 99.6 6.8E-16 2.3E-20 175.1 5.9 169 396-582 356-536 (587)
56 2pze_A Cystic fibrosis transme 99.6 8.9E-16 3E-20 154.1 5.9 175 397-613 22-208 (229)
57 3b60_A Lipid A export ATP-bind 99.6 1.1E-15 3.8E-20 173.1 6.0 170 396-582 356-537 (582)
58 4a82_A Cystic fibrosis transme 99.6 1.1E-15 3.7E-20 173.1 5.1 169 396-582 354-534 (578)
59 3qf4_B Uncharacterized ABC tra 99.6 2.3E-15 7.7E-20 171.1 7.3 188 397-613 369-568 (598)
60 4f4c_A Multidrug resistance pr 99.5 6.7E-15 2.3E-19 180.7 8.4 173 397-585 1093-1278(1321)
61 2bbs_A Cystic fibrosis transme 99.5 7.9E-15 2.7E-19 152.4 5.5 154 397-582 52-217 (290)
62 2vx8_A Nucleoporin-like protei 99.5 3.5E-14 1.2E-18 136.1 9.0 116 1-123 44-159 (169)
63 4f4c_A Multidrug resistance pr 99.4 4.7E-14 1.6E-18 173.3 7.1 169 396-582 431-611 (1321)
64 3g5u_A MCG1178, multidrug resi 99.4 5.8E-14 2E-18 172.0 6.4 169 396-582 403-583 (1284)
65 3g5u_A MCG1178, multidrug resi 99.4 5.1E-14 1.7E-18 172.5 5.6 170 397-582 1047-1228(1284)
66 3ozx_A RNAse L inhibitor; ATP 99.4 3.1E-13 1.1E-17 151.7 5.6 159 399-582 284-444 (538)
67 3bk7_A ABC transporter ATP-bin 99.3 5.4E-13 1.9E-17 151.7 4.0 156 399-582 372-530 (607)
68 3ux8_A Excinuclease ABC, A sub 99.3 1.5E-12 5.3E-17 149.7 7.6 176 395-582 30-262 (670)
69 1yqt_A RNAse L inhibitor; ATP- 99.2 9.8E-13 3.3E-17 147.7 1.7 156 399-582 302-460 (538)
70 3bk7_A ABC transporter ATP-bin 99.2 4E-12 1.4E-16 144.5 5.2 164 398-582 107-286 (607)
71 2qm8_A GTPase/ATPase; G protei 99.2 5.2E-11 1.8E-15 126.1 13.2 133 397-549 43-181 (337)
72 1yqt_A RNAse L inhibitor; ATP- 99.2 6.8E-12 2.3E-16 140.8 5.6 164 398-582 37-216 (538)
73 3j16_B RLI1P; ribosome recycli 99.2 1.9E-11 6.6E-16 138.8 7.4 160 398-582 362-526 (608)
74 3ozx_A RNAse L inhibitor; ATP 99.1 6.8E-11 2.3E-15 132.7 9.4 152 407-582 23-195 (538)
75 2p67_A LAO/AO transport system 99.1 5.1E-10 1.8E-14 118.4 13.7 159 398-586 45-207 (341)
76 3j16_B RLI1P; ribosome recycli 99.1 1.1E-10 3.8E-15 132.7 8.9 160 406-582 100-279 (608)
77 1tq4_A IIGP1, interferon-induc 99.1 1.3E-11 4.3E-16 134.2 1.1 140 396-555 36-202 (413)
78 3ux8_A Excinuclease ABC, A sub 99.1 1.1E-10 3.6E-15 134.4 8.8 97 473-582 504-604 (670)
79 2iw3_A Elongation factor 3A; a 99.1 1.1E-10 3.6E-15 138.3 8.7 151 397-582 449-603 (986)
80 2npi_A Protein CLP1; CLP1-PCF1 99.1 3.8E-12 1.3E-16 140.3 -4.3 182 401-613 130-329 (460)
81 2iw3_A Elongation factor 3A; a 99.0 8.4E-11 2.9E-15 139.2 5.2 48 397-446 687-734 (986)
82 4gp7_A Metallophosphoesterase; 99.0 1.1E-10 3.9E-15 111.1 2.3 139 401-582 1-157 (171)
83 3p32_A Probable GTPase RV1496/ 99.0 9.6E-10 3.3E-14 116.9 8.7 177 409-616 77-274 (355)
84 3b85_A Phosphate starvation-in 98.9 1.5E-10 5.1E-15 114.5 1.8 142 397-586 14-161 (208)
85 3sop_A Neuronal-specific septi 98.9 9.7E-11 3.3E-15 120.3 -0.2 150 412-586 3-153 (270)
86 4dzz_A Plasmid partitioning pr 98.9 1.3E-08 4.6E-13 98.1 14.3 160 412-605 2-162 (206)
87 1hyq_A MIND, cell division inh 98.8 4.9E-08 1.7E-12 98.2 16.0 177 412-605 3-193 (263)
88 2vf7_A UVRA2, excinuclease ABC 98.8 5E-09 1.7E-13 122.7 9.6 65 508-582 725-791 (842)
89 3la6_A Tyrosine-protein kinase 98.8 2.7E-08 9.2E-13 102.9 13.9 163 409-586 90-267 (286)
90 3aez_A Pantothenate kinase; tr 98.8 6E-10 2E-14 116.8 1.3 116 406-551 87-208 (312)
91 3bfv_A CAPA1, CAPB2, membrane 98.8 4.4E-08 1.5E-12 100.4 14.5 161 410-586 81-257 (271)
92 4aby_A DNA repair protein RECN 98.8 3.7E-09 1.3E-13 113.9 6.7 93 514-628 296-397 (415)
93 2r6f_A Excinuclease ABC subuni 98.8 1.8E-08 6E-13 118.8 11.8 64 509-582 841-906 (972)
94 2v9p_A Replication protein E1; 98.8 2E-09 6.8E-14 112.4 2.8 114 397-554 114-228 (305)
95 3cio_A ETK, tyrosine-protein k 98.8 5.4E-08 1.9E-12 101.1 13.5 162 409-586 102-279 (299)
96 2www_A Methylmalonic aciduria 98.8 9.3E-08 3.2E-12 101.5 15.5 145 411-586 74-225 (349)
97 1g3q_A MIND ATPase, cell divis 98.8 6.3E-08 2.2E-12 95.6 13.3 177 412-605 3-194 (237)
98 1cr0_A DNA primase/helicase; R 98.7 3.5E-08 1.2E-12 101.5 11.8 52 396-449 22-74 (296)
99 3pih_A Uvrabc system protein A 98.7 1.8E-08 6E-13 119.1 9.6 62 511-582 803-866 (916)
100 1cp2_A CP2, nitrogenase iron p 98.7 1.9E-07 6.3E-12 94.3 15.7 185 412-605 2-205 (269)
101 3q9l_A Septum site-determining 98.7 4.6E-08 1.6E-12 97.9 11.0 183 412-605 3-208 (260)
102 2ygr_A Uvrabc system protein A 98.7 4.6E-08 1.6E-12 115.6 12.4 65 508-582 858-924 (993)
103 3ea0_A ATPase, para family; al 98.7 9.6E-08 3.3E-12 94.7 12.6 179 411-606 4-203 (245)
104 1ye8_A Protein THEP1, hypothet 98.7 1.7E-08 5.7E-13 97.1 6.2 130 413-582 2-138 (178)
105 2pt7_A CAG-ALFA; ATPase, prote 98.7 1.6E-08 5.4E-13 106.7 5.8 50 398-449 160-209 (330)
106 2afh_E Nitrogenase iron protei 98.6 4.3E-07 1.5E-11 93.0 16.1 185 412-605 3-208 (289)
107 2w0m_A SSO2452; RECA, SSPF, un 98.6 2.9E-07 9.9E-12 89.8 13.5 52 396-449 9-61 (235)
108 4a74_A DNA repair and recombin 98.6 6.2E-08 2.1E-12 94.8 8.4 44 406-451 22-72 (231)
109 1yrb_A ATP(GTP)binding protein 98.6 4.7E-07 1.6E-11 90.7 15.0 158 411-586 14-184 (262)
110 3end_A Light-independent proto 98.6 4.4E-07 1.5E-11 93.8 15.0 182 410-606 40-242 (307)
111 2ph1_A Nucleotide-binding prot 98.6 1.5E-07 5.2E-12 95.2 11.3 182 411-605 18-223 (262)
112 1htw_A HI0065; nucleotide-bind 98.6 1.9E-08 6.5E-13 95.1 3.9 50 397-449 21-70 (158)
113 2i3b_A HCR-ntpase, human cance 98.6 2E-09 6.9E-14 104.8 -3.0 117 412-537 2-137 (189)
114 2jeo_A Uridine-cytidine kinase 98.6 7.7E-09 2.6E-13 103.8 0.5 38 396-435 12-49 (245)
115 1wcv_1 SOJ, segregation protei 98.6 1.3E-07 4.3E-12 95.4 9.4 180 411-604 6-201 (257)
116 2oze_A ORF delta'; para, walke 98.5 1.8E-07 6.2E-12 96.0 9.4 174 412-602 35-242 (298)
117 2e87_A Hypothetical protein PH 98.5 1.9E-07 6.4E-12 99.2 9.7 102 507-616 214-326 (357)
118 1byi_A Dethiobiotin synthase; 98.5 7.1E-06 2.4E-10 80.2 20.0 174 412-605 2-200 (224)
119 3k9g_A PF-32 protein; ssgcid, 98.5 1.8E-06 6E-11 87.2 16.1 176 410-604 26-226 (267)
120 2ehv_A Hypothetical protein PH 98.5 8.5E-07 2.9E-11 87.7 12.9 40 405-446 26-67 (251)
121 3kjh_A CO dehydrogenase/acetyl 98.5 3.8E-07 1.3E-11 90.1 9.8 156 414-585 3-195 (254)
122 1sq5_A Pantothenate kinase; P- 98.5 3.4E-07 1.1E-11 95.4 9.4 74 410-485 79-154 (308)
123 1lw7_A Transcriptional regulat 98.5 2.2E-08 7.6E-13 106.6 0.3 44 399-444 158-207 (365)
124 3cwq_A Para family chromosome 98.4 2.3E-06 8E-11 83.8 14.3 149 413-605 2-153 (209)
125 2wsm_A Hydrogenase expression/ 98.4 8.6E-07 2.9E-11 86.4 10.7 167 410-614 29-202 (221)
126 1z6g_A Guanylate kinase; struc 98.4 1.1E-07 3.9E-12 93.9 3.8 46 398-449 12-57 (218)
127 3qf7_A RAD50; ABC-ATPase, ATPa 98.4 1.9E-06 6.4E-11 92.0 13.1 66 511-582 277-343 (365)
128 3ug7_A Arsenical pump-driving 98.4 1.5E-05 5.1E-10 84.5 18.9 38 412-449 27-64 (349)
129 2eyu_A Twitching motility prot 98.3 4.2E-07 1.4E-11 92.6 6.7 49 397-449 15-64 (261)
130 3zq6_A Putative arsenical pump 98.3 7E-06 2.4E-10 86.0 15.8 43 412-455 15-57 (324)
131 1pzn_A RAD51, DNA repair and r 98.3 3.8E-06 1.3E-10 89.1 13.7 100 342-451 71-178 (349)
132 1e69_A Chromosome segregation 98.3 9.8E-07 3.3E-11 92.3 9.0 65 511-583 217-281 (322)
133 2cvh_A DNA repair and recombin 98.3 2E-06 6.8E-11 83.4 9.9 48 397-449 7-55 (220)
134 3pg5_A Uncharacterized protein 98.3 3E-06 1E-10 90.2 11.2 42 412-453 2-44 (361)
135 3iqw_A Tail-anchored protein t 98.2 6.8E-06 2.3E-10 86.7 13.3 39 411-449 16-54 (334)
136 2xj4_A MIPZ; replication, cell 98.2 1.9E-06 6.5E-11 88.3 8.8 120 412-547 5-136 (286)
137 3lda_A DNA repair protein RAD5 98.2 9.6E-06 3.3E-10 87.7 13.9 110 343-466 120-237 (400)
138 3ez9_A Para; DNA binding, wing 98.2 2.8E-06 9.5E-11 91.5 9.4 43 409-451 109-158 (403)
139 1tf7_A KAIC; homohexamer, hexa 98.2 5.3E-06 1.8E-10 92.6 11.9 134 405-583 277-416 (525)
140 3fwy_A Light-independent proto 98.2 3.2E-05 1.1E-09 80.8 17.0 180 411-606 48-249 (314)
141 3izq_1 HBS1P, elongation facto 98.2 9.3E-06 3.2E-10 92.4 13.5 65 312-389 40-104 (611)
142 3ez2_A Plasmid partition prote 98.2 4E-06 1.4E-10 90.0 9.7 41 410-450 107-154 (398)
143 2dr3_A UPF0273 protein PH0284; 98.2 1.7E-05 5.8E-10 78.1 13.2 42 406-449 20-61 (247)
144 1nlf_A Regulatory protein REPA 98.2 1.9E-05 6.4E-10 80.4 13.9 41 406-448 27-77 (279)
145 1ewq_A DNA mismatch repair pro 98.1 1.4E-06 4.7E-11 101.5 5.2 39 398-441 568-607 (765)
146 2gza_A Type IV secretion syste 98.1 1.2E-06 4E-11 93.5 4.0 52 397-450 163-214 (361)
147 1ihu_A Arsenical pump-driving 98.1 1.8E-05 6.1E-10 89.4 13.6 44 410-454 7-50 (589)
148 2woj_A ATPase GET3; tail-ancho 98.1 2.1E-05 7.2E-10 83.5 13.1 42 412-454 19-62 (354)
149 1n0w_A DNA repair protein RAD5 98.1 4.2E-06 1.5E-10 82.4 7.2 27 406-434 21-47 (243)
150 2hf9_A Probable hydrogenase ni 98.1 6.2E-06 2.1E-10 80.5 8.1 41 410-451 37-77 (226)
151 1tf7_A KAIC; homohexamer, hexa 98.1 4E-06 1.4E-10 93.6 7.1 52 396-449 25-79 (525)
152 2qnr_A Septin-2, protein NEDD5 98.0 2.5E-07 8.5E-12 96.2 -2.8 44 397-449 12-56 (301)
153 2f1r_A Molybdopterin-guanine d 98.0 1.1E-06 3.9E-11 84.0 2.0 108 412-534 3-124 (171)
154 3jvv_A Twitching mobility prot 98.0 7.3E-06 2.5E-10 87.3 8.3 38 407-446 121-159 (356)
155 3thx_B DNA mismatch repair pro 98.0 3.3E-06 1.1E-10 99.9 6.0 36 398-435 662-697 (918)
156 2woo_A ATPase GET3; tail-ancho 98.0 4.5E-05 1.5E-09 80.1 13.6 40 411-450 19-58 (329)
157 3euj_A Chromosome partition pr 98.0 1.2E-06 4E-11 96.8 1.4 52 396-450 17-68 (483)
158 3szr_A Interferon-induced GTP- 98.0 1.2E-06 3.9E-11 99.8 1.2 37 413-449 47-84 (608)
159 2obl_A ESCN; ATPase, hydrolase 98.0 2.5E-06 8.6E-11 90.5 3.6 50 396-448 59-108 (347)
160 3io3_A DEHA2D07832P; chaperone 98.0 2.2E-05 7.6E-10 83.3 10.5 39 411-449 18-58 (348)
161 3thx_A DNA mismatch repair pro 98.0 6.2E-06 2.1E-10 97.9 6.8 35 398-434 651-685 (934)
162 3fkq_A NTRC-like two-domain pr 98.0 3.8E-05 1.3E-09 81.9 12.0 40 409-448 141-181 (373)
163 3c8u_A Fructokinase; YP_612366 97.9 8.7E-06 3E-10 79.3 5.9 40 412-451 23-62 (208)
164 3qkt_A DNA double-strand break 97.9 0.00012 4.2E-09 76.9 15.1 66 512-583 247-313 (339)
165 2o8b_B DNA mismatch repair pro 97.9 4E-06 1.4E-10 100.4 4.0 36 398-436 771-813 (1022)
166 3tr0_A Guanylate kinase, GMP k 97.9 5.6E-06 1.9E-10 79.6 4.1 41 405-451 3-43 (205)
167 1znw_A Guanylate kinase, GMP k 97.9 4.5E-06 1.6E-10 81.3 3.5 36 397-436 10-45 (207)
168 3tqc_A Pantothenate kinase; bi 97.9 1.6E-05 5.4E-10 83.5 7.8 46 408-453 89-136 (321)
169 2r6a_A DNAB helicase, replicat 97.9 0.00087 3E-08 73.2 22.0 53 395-449 189-242 (454)
170 1nrj_A Signal recognition part 97.9 5.2E-05 1.8E-09 69.0 9.9 92 1-92 1-115 (158)
171 2dpy_A FLII, flagellum-specifi 97.9 4.5E-06 1.6E-10 91.2 3.6 49 396-447 145-193 (438)
172 2ewv_A Twitching motility prot 97.9 9.9E-06 3.4E-10 86.7 6.2 41 406-448 133-174 (372)
173 1rz3_A Hypothetical protein rb 97.9 1.2E-05 4.1E-10 78.0 6.1 44 410-453 21-64 (201)
174 3of5_A Dethiobiotin synthetase 97.9 0.00073 2.5E-08 67.2 19.2 176 412-605 5-202 (228)
175 3lnc_A Guanylate kinase, GMP k 97.9 3.1E-06 1.1E-10 83.7 1.5 36 398-435 16-52 (231)
176 2oap_1 GSPE-2, type II secreti 97.8 7.6E-06 2.6E-10 91.2 4.1 53 396-450 247-299 (511)
177 1wb9_A DNA mismatch repair pro 97.8 2E-05 7E-10 92.1 7.9 36 398-436 597-632 (800)
178 3hr8_A Protein RECA; alpha and 97.8 0.00018 6.2E-09 76.5 14.3 40 407-448 59-98 (356)
179 3asz_A Uridine kinase; cytidin 97.8 1.7E-05 5.7E-10 76.9 5.7 36 412-450 7-42 (211)
180 1p9r_A General secretion pathw 97.8 1.5E-05 5.3E-10 86.5 6.1 41 407-449 165-205 (418)
181 1v5w_A DMC1, meiotic recombina 97.8 8.6E-05 3E-09 78.3 11.6 157 343-518 64-231 (343)
182 2z43_A DNA repair and recombin 97.8 4.8E-05 1.6E-09 79.5 8.9 154 344-518 50-215 (324)
183 3igf_A ALL4481 protein; two-do 97.8 0.00025 8.5E-09 75.9 14.1 36 412-447 3-38 (374)
184 3iev_A GTP-binding protein ERA 97.7 0.0002 6.8E-09 74.3 12.9 94 506-608 58-162 (308)
185 2x8a_A Nuclear valosin-contain 97.7 1.7E-05 6E-10 81.1 4.7 51 395-451 32-82 (274)
186 2ged_A SR-beta, signal recogni 97.7 0.0001 3.5E-09 69.6 9.4 23 411-433 48-70 (193)
187 1z0f_A RAB14, member RAS oncog 97.7 0.00018 6.3E-09 66.3 11.0 98 507-614 64-166 (179)
188 1u0l_A Probable GTPase ENGC; p 97.7 2E-06 6.9E-11 89.2 -2.8 43 407-451 167-212 (301)
189 1nij_A Hypothetical protein YJ 97.7 5E-05 1.7E-09 79.3 7.8 35 411-447 4-38 (318)
190 1zp6_A Hypothetical protein AT 97.7 1.4E-05 4.8E-10 76.0 3.3 39 406-448 6-44 (191)
191 3t34_A Dynamin-related protein 97.7 5.4E-05 1.8E-09 80.1 8.0 31 398-433 26-56 (360)
192 3a00_A Guanylate kinase, GMP k 97.7 1.3E-05 4.6E-10 76.5 2.8 26 412-437 2-27 (186)
193 2ce2_X GTPase HRAS; signaling 97.7 0.00042 1.4E-08 62.7 12.7 93 507-608 51-145 (166)
194 3fgn_A Dethiobiotin synthetase 97.7 0.0022 7.6E-08 64.8 18.8 175 412-605 27-218 (251)
195 3uie_A Adenylyl-sulfate kinase 97.7 4.1E-05 1.4E-09 73.9 5.7 42 398-442 14-55 (200)
196 2qag_C Septin-7; cell cycle, c 97.6 4.1E-06 1.4E-10 91.0 -1.9 25 413-437 33-57 (418)
197 3clv_A RAB5 protein, putative; 97.6 0.00039 1.3E-08 65.2 12.1 90 507-608 93-184 (208)
198 3vaa_A Shikimate kinase, SK; s 97.6 2.7E-05 9.4E-10 75.1 4.0 40 394-435 10-49 (199)
199 1s96_A Guanylate kinase, GMP k 97.6 1.8E-05 6E-10 78.5 2.5 42 406-449 13-56 (219)
200 1z2a_A RAS-related protein RAB 97.6 0.0001 3.4E-09 67.4 7.4 91 507-608 54-147 (168)
201 2hxs_A RAB-26, RAS-related pro 97.6 9.1E-05 3.1E-09 68.6 7.2 101 507-614 56-161 (178)
202 3lxx_A GTPase IMAP family memb 97.6 0.00023 7.9E-09 70.4 10.3 23 411-433 29-51 (239)
203 4eun_A Thermoresistant glucoki 97.6 6.4E-05 2.2E-09 72.5 6.0 35 412-450 30-64 (200)
204 3ec2_A DNA replication protein 97.6 2.7E-05 9.4E-10 73.6 3.3 39 406-446 35-74 (180)
205 2erx_A GTP-binding protein DI- 97.6 0.00045 1.6E-08 63.1 11.4 94 507-608 51-147 (172)
206 2zr9_A Protein RECA, recombina 97.6 0.00054 1.8E-08 72.6 13.5 41 407-449 59-99 (349)
207 2i1q_A DNA repair and recombin 97.6 0.0003 1E-08 73.1 11.1 110 344-467 41-168 (322)
208 3tkl_A RAS-related protein RAB 97.6 0.00064 2.2E-08 64.0 12.4 98 507-614 65-167 (196)
209 1ega_A Protein (GTP-binding pr 97.5 0.00015 5E-09 75.1 8.4 23 412-434 9-31 (301)
210 2a9k_A RAS-related protein RAL 97.5 0.00073 2.5E-08 62.7 12.4 93 507-608 66-161 (187)
211 1ihu_A Arsenical pump-driving 97.5 0.00025 8.5E-09 80.0 10.9 39 412-450 328-366 (589)
212 3k53_A Ferrous iron transport 97.5 3E-05 1E-09 78.7 2.9 94 507-613 50-153 (271)
213 1u8z_A RAS-related protein RAL 97.5 0.00091 3.1E-08 60.6 12.5 93 507-608 52-147 (168)
214 3con_A GTPase NRAS; structural 97.5 0.00067 2.3E-08 63.7 11.9 93 507-608 69-163 (190)
215 2qag_B Septin-6, protein NEDD5 97.5 3.4E-05 1.2E-09 83.9 3.2 35 399-435 30-66 (427)
216 3bh0_A DNAB-like replicative h 97.5 0.0024 8.3E-08 66.3 17.1 52 396-449 55-106 (315)
217 3dz8_A RAS-related protein RAB 97.5 0.00071 2.4E-08 63.9 11.7 92 507-608 72-166 (191)
218 2dy1_A Elongation factor G; tr 97.5 0.00011 3.7E-09 84.4 7.1 142 412-601 10-154 (665)
219 3qxc_A Dethiobiotin synthetase 97.5 0.0054 1.8E-07 61.6 18.7 157 412-586 22-202 (242)
220 1kao_A RAP2A; GTP-binding prot 97.5 0.0009 3.1E-08 60.6 12.0 93 507-608 51-146 (167)
221 2yvu_A Probable adenylyl-sulfa 97.5 6.7E-05 2.3E-09 71.3 4.4 39 411-449 13-51 (186)
222 2bdt_A BH3686; alpha-beta prot 97.5 7.6E-05 2.6E-09 71.0 4.6 34 412-448 3-36 (189)
223 1lvg_A Guanylate kinase, GMP k 97.5 4.8E-05 1.6E-09 73.7 3.2 25 412-436 5-29 (198)
224 4afi_A AP-3 complex subunit de 97.5 0.00077 2.6E-08 64.5 11.4 106 4-120 57-166 (173)
225 2kjq_A DNAA-related protein; s 97.4 8.9E-05 3E-09 68.8 4.7 35 412-446 37-71 (149)
226 2gf0_A GTP-binding protein DI- 97.4 0.0012 4.2E-08 62.1 12.8 94 507-608 56-151 (199)
227 1udx_A The GTP-binding protein 97.4 0.0002 6.8E-09 77.7 8.1 33 400-434 148-180 (416)
228 4dsu_A GTPase KRAS, isoform 2B 97.4 0.0012 4.2E-08 61.3 12.5 98 508-614 53-154 (189)
229 1z06_A RAS-related protein RAB 97.4 0.0012 4.2E-08 62.0 12.6 94 507-608 69-165 (189)
230 2efe_B Small GTP-binding prote 97.4 0.0013 4.6E-08 60.8 12.7 92 507-608 61-155 (181)
231 2bcg_Y Protein YP2, GTP-bindin 97.4 0.00015 5.1E-09 69.4 6.0 98 507-614 57-159 (206)
232 1nrj_B SR-beta, signal recogni 97.4 0.00028 9.4E-09 68.1 8.0 25 410-434 11-35 (218)
233 2bov_A RAla, RAS-related prote 97.4 0.0016 5.5E-08 61.6 13.1 99 507-614 62-165 (206)
234 1m2o_B GTP-binding protein SAR 97.4 0.00022 7.6E-09 67.8 7.0 33 398-433 13-45 (190)
235 2fg5_A RAB-22B, RAS-related pr 97.4 0.0012 4E-08 62.5 11.9 92 507-608 72-166 (192)
236 1z0j_A RAB-22, RAS-related pro 97.4 0.0017 5.8E-08 59.1 12.6 92 507-608 55-149 (170)
237 2dyk_A GTP-binding protein; GT 97.4 0.00025 8.5E-09 64.3 6.8 22 412-433 2-23 (161)
238 3q85_A GTP-binding protein REM 97.4 0.00045 1.5E-08 63.3 8.6 94 507-608 51-147 (169)
239 3nwj_A ATSK2; P loop, shikimat 97.4 7.8E-05 2.7E-09 75.4 3.7 38 396-435 32-72 (250)
240 1xjc_A MOBB protein homolog; s 97.4 0.00017 5.9E-09 68.8 5.8 39 411-449 4-42 (169)
241 3b1v_A Ferrous iron uptake tra 97.4 0.00016 5.3E-09 74.0 5.9 95 506-614 48-152 (272)
242 3cph_A RAS-related protein SEC 97.4 0.00058 2E-08 65.2 9.6 99 507-615 69-171 (213)
243 1r2q_A RAS-related protein RAB 97.4 0.0018 6.1E-08 58.9 12.3 92 507-608 55-149 (170)
244 1x3s_A RAS-related protein RAB 97.4 0.00096 3.3E-08 62.5 10.7 93 507-608 64-158 (195)
245 3bgw_A DNAB-like replicative h 97.4 0.015 5.2E-07 63.4 21.7 52 396-449 184-235 (444)
246 3t61_A Gluconokinase; PSI-biol 97.3 0.00037 1.3E-08 66.9 7.9 36 411-451 18-53 (202)
247 3gee_A MNME, tRNA modification 97.3 0.00045 1.5E-08 76.2 9.4 102 506-614 280-386 (476)
248 3kta_A Chromosome segregation 97.3 7E-05 2.4E-09 70.7 2.6 37 401-440 19-55 (182)
249 3a1s_A Iron(II) transport prot 97.3 8E-05 2.7E-09 75.4 3.1 96 506-615 51-156 (258)
250 2yv5_A YJEQ protein; hydrolase 97.3 7.2E-05 2.5E-09 77.6 2.8 42 408-452 164-208 (302)
251 2q6t_A DNAB replication FORK h 97.3 0.008 2.7E-07 65.3 19.1 52 396-449 187-239 (444)
252 1g16_A RAS-related protein SEC 97.3 0.001 3.6E-08 60.6 10.3 97 507-613 52-152 (170)
253 1u94_A RECA protein, recombina 97.3 0.0014 4.9E-08 69.5 12.6 42 406-449 60-101 (356)
254 1qhl_A Protein (cell division 97.3 1.5E-05 5.2E-10 79.6 -2.7 38 412-449 28-65 (227)
255 2j41_A Guanylate kinase; GMP, 97.3 9E-05 3.1E-09 71.0 2.9 30 406-437 3-32 (207)
256 3i8s_A Ferrous iron transport 97.3 0.00017 5.8E-09 73.5 5.1 89 506-608 49-149 (274)
257 1f6b_A SAR1; gtpases, N-termin 97.3 0.00014 4.8E-09 69.7 4.2 33 397-432 14-46 (198)
258 1kgd_A CASK, peripheral plasma 97.3 0.00011 3.8E-09 69.7 3.5 33 412-444 6-39 (180)
259 3iby_A Ferrous iron transport 97.3 0.00064 2.2E-08 68.6 9.2 94 507-614 48-155 (256)
260 2a5j_A RAS-related protein RAB 97.3 0.0012 4.2E-08 62.2 10.7 98 507-614 70-172 (191)
261 3kkq_A RAS-related protein M-R 97.3 0.00084 2.9E-08 62.5 9.2 91 509-608 68-161 (183)
262 2vp4_A Deoxynucleoside kinase; 97.3 0.0001 3.5E-09 73.0 3.0 37 407-449 18-54 (230)
263 1wf3_A GTP-binding protein; GT 97.3 0.0006 2.1E-08 70.6 8.9 75 506-586 54-130 (301)
264 3t1o_A Gliding protein MGLA; G 97.3 0.0023 7.8E-08 59.8 12.2 101 507-614 74-180 (198)
265 3bc1_A RAS-related protein RAB 97.3 0.0023 7.9E-08 59.5 12.2 93 507-608 70-165 (195)
266 1ky3_A GTP-binding protein YPT 97.3 0.0017 5.8E-08 59.9 11.1 101 507-614 58-166 (182)
267 1ek0_A Protein (GTP-binding pr 97.3 0.0024 8.2E-08 58.0 11.9 92 507-608 52-149 (170)
268 3tw8_B RAS-related protein RAB 97.2 0.00062 2.1E-08 62.8 8.0 91 507-608 58-151 (181)
269 1gvn_B Zeta; postsegregational 97.2 0.00028 9.6E-09 72.6 6.1 62 376-452 10-71 (287)
270 2nzj_A GTP-binding protein REM 97.2 0.0012 4E-08 60.7 9.8 101 507-615 52-158 (175)
271 1c1y_A RAS-related protein RAP 97.2 0.0023 8E-08 58.0 11.7 93 507-608 51-147 (167)
272 2g6b_A RAS-related protein RAB 97.2 0.00045 1.6E-08 63.9 6.9 92 507-608 60-154 (180)
273 1knq_A Gluconate kinase; ALFA/ 97.2 0.00029 9.8E-09 66.0 5.5 34 412-449 9-42 (175)
274 2y8e_A RAB-protein 6, GH09086P 97.2 0.003 1E-07 58.0 12.3 92 507-608 63-157 (179)
275 1sxj_E Activator 1 40 kDa subu 97.2 0.0005 1.7E-08 71.6 7.8 36 414-449 39-75 (354)
276 4a1f_A DNAB helicase, replicat 97.2 0.0047 1.6E-07 65.1 15.2 49 399-449 36-84 (338)
277 1ixz_A ATP-dependent metallopr 97.2 0.00014 4.8E-09 72.6 3.3 48 396-449 38-85 (254)
278 1svm_A Large T antigen; AAA+ f 97.2 0.00025 8.5E-09 76.0 5.4 44 396-444 156-199 (377)
279 1odf_A YGR205W, hypothetical 3 97.2 0.0002 6.8E-09 74.0 4.4 45 408-452 28-75 (290)
280 2ew1_A RAS-related protein RAB 97.2 0.00076 2.6E-08 65.0 8.3 99 507-615 75-178 (201)
281 2rcn_A Probable GTPase ENGC; Y 97.2 0.00011 3.8E-09 78.2 2.5 44 399-445 206-250 (358)
282 1xp8_A RECA protein, recombina 97.2 0.0021 7.1E-08 68.6 12.4 41 407-449 72-112 (366)
283 4eaq_A DTMP kinase, thymidylat 97.2 0.00046 1.6E-08 68.5 6.9 34 412-446 27-60 (229)
284 2pez_A Bifunctional 3'-phospho 97.2 0.00027 9.2E-09 66.6 4.9 38 412-449 6-43 (179)
285 1t9h_A YLOQ, probable GTPase E 97.2 5.6E-05 1.9E-09 78.8 0.0 44 406-451 170-216 (307)
286 2atv_A RERG, RAS-like estrogen 97.2 0.00072 2.5E-08 64.1 7.7 92 507-608 76-170 (196)
287 1iy2_A ATP-dependent metallopr 97.2 0.00016 5.5E-09 73.4 3.3 48 396-449 62-109 (278)
288 2h5e_A Peptide chain release f 97.2 0.00034 1.2E-08 78.2 6.2 86 506-605 81-167 (529)
289 2oil_A CATX-8, RAS-related pro 97.2 0.0011 3.8E-08 62.4 8.9 92 507-608 74-168 (193)
290 2fh5_B SR-beta, signal recogni 97.2 0.00041 1.4E-08 66.7 5.9 22 412-433 8-29 (214)
291 2zts_A Putative uncharacterize 97.2 0.004 1.4E-07 60.9 13.2 42 406-449 27-69 (251)
292 1h65_A Chloroplast outer envel 97.2 0.0017 5.7E-08 65.6 10.6 23 411-433 39-61 (270)
293 1r8s_A ADP-ribosylation factor 97.1 0.002 6.8E-08 58.5 10.2 72 506-586 43-114 (164)
294 1np6_A Molybdopterin-guanine d 97.1 0.00042 1.5E-08 66.2 5.7 38 412-449 7-44 (174)
295 2fn4_A P23, RAS-related protei 97.1 0.0038 1.3E-07 57.4 12.2 92 507-608 57-152 (181)
296 2p5s_A RAS and EF-hand domain 97.1 0.0019 6.5E-08 61.4 10.3 92 507-608 77-177 (199)
297 3def_A T7I23.11 protein; chlor 97.1 0.0013 4.4E-08 66.3 9.5 23 411-433 36-58 (262)
298 2p5t_B PEZT; postsegregational 97.1 0.0041 1.4E-07 62.2 13.2 41 410-453 31-71 (253)
299 1in4_A RUVB, holliday junction 97.1 7.1E-05 2.4E-09 78.4 0.1 39 397-435 32-75 (334)
300 2gf9_A RAS-related protein RAB 97.1 0.0014 4.7E-08 61.7 9.0 92 507-608 71-165 (189)
301 1z08_A RAS-related protein RAB 97.1 0.0013 4.4E-08 60.1 8.6 92 507-608 55-149 (170)
302 3tau_A Guanylate kinase, GMP k 97.1 0.00019 6.4E-09 69.9 3.0 26 412-437 9-34 (208)
303 2bbw_A Adenylate kinase 4, AK4 97.1 0.00025 8.6E-09 70.6 4.0 25 411-435 27-51 (246)
304 4dhe_A Probable GTP-binding pr 97.1 0.00091 3.1E-08 64.6 7.9 23 411-433 29-51 (223)
305 1zbd_A Rabphilin-3A; G protein 97.1 0.0032 1.1E-07 59.7 11.6 98 507-614 57-159 (203)
306 3llm_A ATP-dependent RNA helic 97.1 0.0045 1.6E-07 61.0 13.0 58 407-466 74-134 (235)
307 2bme_A RAB4A, RAS-related prot 97.1 0.0026 8.8E-08 59.2 10.6 98 507-614 59-161 (186)
308 1mky_A Probable GTP-binding pr 97.1 0.0011 3.8E-08 72.0 9.2 24 411-434 180-203 (439)
309 3cr8_A Sulfate adenylyltranfer 97.1 0.00029 9.9E-09 79.1 4.6 42 406-449 366-408 (552)
310 1upt_A ARL1, ADP-ribosylation 97.1 0.00094 3.2E-08 61.1 7.2 72 507-587 51-122 (171)
311 2xtp_A GTPase IMAP family memb 97.1 0.0021 7.3E-08 64.1 10.4 23 411-433 22-44 (260)
312 1zd9_A ADP-ribosylation factor 97.1 0.0015 5.1E-08 61.6 8.8 22 412-433 23-44 (188)
313 3bwd_D RAC-like GTP-binding pr 97.1 0.0014 4.9E-08 60.6 8.4 96 507-613 56-168 (182)
314 1fzq_A ADP-ribosylation factor 97.1 0.0019 6.4E-08 60.7 9.2 23 411-433 16-38 (181)
315 1pui_A ENGB, probable GTP-bind 97.0 8.3E-05 2.9E-09 71.3 -0.2 34 398-435 17-50 (210)
316 1lnz_A SPO0B-associated GTP-bi 97.0 0.00067 2.3E-08 71.7 6.6 104 507-614 206-318 (342)
317 4tmk_A Protein (thymidylate ki 97.0 0.0099 3.4E-07 58.4 14.4 50 412-462 4-54 (213)
318 3oes_A GTPase rhebl1; small GT 97.0 0.0014 4.7E-08 62.5 8.0 94 506-608 71-167 (201)
319 2hup_A RAS-related protein RAB 97.0 0.0036 1.2E-07 59.8 11.1 98 507-614 78-181 (201)
320 1sxj_C Activator 1 40 kDa subu 97.0 0.00038 1.3E-08 72.7 4.4 52 397-448 32-83 (340)
321 3lv8_A DTMP kinase, thymidylat 97.0 0.0057 2E-07 61.2 12.8 35 411-445 27-62 (236)
322 1m7g_A Adenylylsulfate kinase; 97.0 0.00049 1.7E-08 66.9 4.7 41 407-449 23-64 (211)
323 1kag_A SKI, shikimate kinase I 97.0 0.00028 9.7E-09 65.7 2.9 25 412-436 5-29 (173)
324 1fnn_A CDC6P, cell division co 97.0 0.0075 2.6E-07 63.0 14.3 39 413-451 46-85 (389)
325 2f7s_A C25KG, RAS-related prot 97.0 0.0051 1.7E-07 59.0 11.9 100 506-615 83-188 (217)
326 3reg_A RHO-like small GTPase; 97.0 0.0021 7E-08 60.7 8.9 91 507-608 71-168 (194)
327 2yc2_C IFT27, small RAB-relate 97.0 0.00082 2.8E-08 63.7 6.0 102 507-615 73-181 (208)
328 2j1l_A RHO-related GTP-binding 97.0 0.0065 2.2E-07 58.6 12.5 23 411-433 34-56 (214)
329 3e1s_A Exodeoxyribonuclease V, 97.0 0.002 6.8E-08 72.7 10.1 112 412-547 205-316 (574)
330 1wms_A RAB-9, RAB9, RAS-relate 97.0 0.0082 2.8E-07 55.1 12.7 95 507-608 56-154 (177)
331 3t5g_A GTP-binding protein RHE 97.0 0.001 3.4E-08 61.9 6.4 93 507-608 54-149 (181)
332 2fv8_A H6, RHO-related GTP-bin 97.0 0.0033 1.1E-07 60.2 10.3 22 412-433 26-47 (207)
333 2gco_A H9, RHO-related GTP-bin 97.0 0.0023 7.9E-08 61.0 9.1 69 507-586 73-142 (201)
334 1jwy_B Dynamin A GTPase domain 97.0 0.00054 1.8E-08 70.3 4.9 23 412-434 25-47 (315)
335 4e22_A Cytidylate kinase; P-lo 97.0 9.3E-05 3.2E-09 74.4 -0.9 32 412-443 28-62 (252)
336 3q72_A GTP-binding protein RAD 97.0 0.0067 2.3E-07 55.1 11.8 99 507-614 49-152 (166)
337 3a4m_A L-seryl-tRNA(SEC) kinas 97.0 0.0005 1.7E-08 69.3 4.5 40 411-450 4-43 (260)
338 4dcu_A GTP-binding protein ENG 96.9 0.001 3.5E-08 72.7 7.1 72 506-586 70-144 (456)
339 1svi_A GTP-binding protein YSX 96.9 0.0028 9.5E-08 59.5 9.2 24 410-433 22-45 (195)
340 2iwr_A Centaurin gamma 1; ANK 96.9 0.0027 9.2E-08 58.7 8.9 97 507-615 54-158 (178)
341 2o52_A RAS-related protein RAB 96.9 0.007 2.4E-07 57.6 12.0 98 507-614 74-176 (200)
342 4bas_A ADP-ribosylation factor 96.9 0.0033 1.1E-07 59.1 9.6 23 411-433 17-39 (199)
343 3lxw_A GTPase IMAP family memb 96.9 0.0043 1.5E-07 62.0 10.9 23 411-433 21-43 (247)
344 1mh1_A RAC1; GTP-binding, GTPa 96.9 0.0016 5.5E-08 60.4 7.2 97 507-614 53-168 (186)
345 2qt1_A Nicotinamide riboside k 96.9 0.00048 1.6E-08 66.4 3.5 35 412-450 22-56 (207)
346 3q3j_B RHO-related GTP-binding 96.9 0.0019 6.7E-08 62.5 7.8 91 507-608 75-182 (214)
347 2qby_A CDC6 homolog 1, cell di 96.9 0.0042 1.4E-07 64.5 10.9 39 410-448 44-85 (386)
348 2il1_A RAB12; G-protein, GDP, 96.9 0.00071 2.4E-08 64.1 4.5 92 507-608 75-170 (192)
349 2qtf_A Protein HFLX, GTP-bindi 96.9 0.002 7E-08 68.5 8.5 23 412-434 180-202 (364)
350 3p26_A Elongation factor 1 alp 96.9 0.0045 1.5E-07 68.1 11.6 101 506-617 110-229 (483)
351 3pqc_A Probable GTP-binding pr 96.9 0.0047 1.6E-07 57.6 10.1 22 412-433 24-45 (195)
352 3lw7_A Adenylate kinase relate 96.8 0.003 1E-07 57.9 8.5 20 412-431 2-21 (179)
353 2fu5_C RAS-related protein RAB 96.8 0.0045 1.6E-07 57.4 9.8 98 507-614 57-159 (183)
354 4fcw_A Chaperone protein CLPB; 96.8 0.0028 9.6E-08 64.5 9.0 41 412-452 48-88 (311)
355 4dcu_A GTP-binding protein ENG 96.8 0.0031 1E-07 68.9 9.7 99 507-616 243-359 (456)
356 1zj6_A ADP-ribosylation factor 96.8 0.0052 1.8E-07 57.5 10.0 71 507-586 60-130 (187)
357 3j2k_7 ERF3, eukaryotic polype 96.8 0.0057 1.9E-07 66.6 11.7 23 412-434 18-40 (439)
358 3ld9_A DTMP kinase, thymidylat 96.8 0.01 3.5E-07 58.9 12.5 52 410-461 20-72 (223)
359 3bos_A Putative DNA replicatio 96.8 0.0016 5.5E-08 63.1 6.6 40 411-450 52-91 (242)
360 1q57_A DNA primase/helicase; d 96.8 0.0046 1.6E-07 68.2 11.0 51 397-449 230-281 (503)
361 3ney_A 55 kDa erythrocyte memb 96.8 0.00066 2.3E-08 66.2 3.7 25 412-436 20-44 (197)
362 3geh_A MNME, tRNA modification 96.8 0.0052 1.8E-07 67.4 11.2 23 412-434 225-247 (462)
363 2atx_A Small GTP binding prote 96.8 0.0026 8.8E-08 59.9 7.7 97 507-614 66-181 (194)
364 4edh_A DTMP kinase, thymidylat 96.8 0.012 4.2E-07 57.7 12.7 35 412-446 7-41 (213)
365 2hjg_A GTP-binding protein ENG 96.7 0.0027 9.3E-08 68.9 8.5 98 508-616 224-339 (436)
366 2b8t_A Thymidine kinase; deoxy 96.7 0.0018 6.3E-08 64.3 6.5 38 412-449 13-52 (223)
367 4b93_A Vesicle-associated memb 96.7 0.0089 3E-07 57.8 11.1 109 4-122 5-116 (189)
368 3v9p_A DTMP kinase, thymidylat 96.7 0.013 4.4E-07 58.2 12.6 35 412-446 26-64 (227)
369 2b6h_A ADP-ribosylation factor 96.7 0.0055 1.9E-07 58.1 9.6 23 410-432 28-50 (192)
370 3c5c_A RAS-like protein 12; GD 96.7 0.0062 2.1E-07 57.3 9.9 94 507-608 69-165 (187)
371 2w58_A DNAI, primosome compone 96.7 0.0013 4.6E-08 62.8 5.2 37 412-448 55-91 (202)
372 1ly1_A Polynucleotide kinase; 96.7 0.00078 2.7E-08 62.7 3.4 36 411-450 2-37 (181)
373 2q3h_A RAS homolog gene family 96.7 0.0092 3.1E-07 56.4 10.9 96 507-613 68-182 (201)
374 2h57_A ADP-ribosylation factor 96.7 0.0015 5.2E-08 61.4 5.2 24 411-434 21-44 (190)
375 1cke_A CK, MSSA, protein (cyti 96.7 0.00094 3.2E-08 64.9 3.9 24 412-435 6-29 (227)
376 2h17_A ADP-ribosylation factor 96.7 0.0026 9E-08 59.3 6.8 23 411-433 21-43 (181)
377 3cpj_B GTP-binding protein YPT 96.7 0.0084 2.9E-07 58.1 10.6 97 507-613 62-163 (223)
378 3umf_A Adenylate kinase; rossm 96.7 0.0056 1.9E-07 60.5 9.3 39 410-452 28-66 (217)
379 1gtv_A TMK, thymidylate kinase 96.7 0.00062 2.1E-08 65.5 2.4 36 413-448 2-37 (214)
380 3cmw_A Protein RECA, recombina 96.6 0.043 1.5E-06 68.7 19.1 94 406-518 729-822 (1706)
381 2aka_B Dynamin-1; fusion prote 96.6 0.005 1.7E-07 62.3 9.2 23 412-434 27-49 (299)
382 1nks_A Adenylate kinase; therm 96.6 0.0016 5.3E-08 61.2 5.0 36 412-447 2-37 (194)
383 2hjg_A GTP-binding protein ENG 96.6 0.0014 4.9E-08 71.0 5.4 73 506-586 50-124 (436)
384 2vhj_A Ntpase P4, P4; non- hyd 96.6 0.014 4.6E-07 61.3 12.5 36 407-447 121-156 (331)
385 2v1u_A Cell division control p 96.6 0.014 4.7E-07 60.7 12.7 42 409-450 42-89 (387)
386 1mky_A Probable GTP-binding pr 96.6 0.0039 1.3E-07 67.7 8.7 70 508-586 50-123 (439)
387 1zun_B Sulfate adenylate trans 96.6 0.0092 3.1E-07 64.7 11.6 97 507-616 104-214 (434)
388 1a7j_A Phosphoribulokinase; tr 96.6 0.0011 3.7E-08 68.3 3.8 41 411-451 5-45 (290)
389 3io5_A Recombination and repai 96.6 0.0038 1.3E-07 65.3 7.9 89 413-519 30-124 (333)
390 1kht_A Adenylate kinase; phosp 96.6 0.0014 4.8E-08 61.5 4.3 35 412-446 4-38 (192)
391 1ksh_A ARF-like protein 2; sma 96.6 0.0026 8.8E-08 59.4 6.1 23 411-433 18-40 (186)
392 3cbq_A GTP-binding protein REM 96.6 0.027 9.4E-07 53.4 13.4 94 507-608 72-168 (195)
393 4djt_A GTP-binding nuclear pro 96.6 0.0014 4.9E-08 63.0 4.4 99 507-615 61-164 (218)
394 3sjy_A Translation initiation 96.6 0.023 7.9E-07 60.8 14.3 69 507-587 75-143 (403)
395 1oix_A RAS-related protein RAB 96.6 0.00061 2.1E-08 64.8 1.6 25 412-436 30-54 (191)
396 2r8r_A Sensor protein; KDPD, P 96.6 0.0032 1.1E-07 62.8 6.7 42 412-453 7-48 (228)
397 1f2t_A RAD50 ABC-ATPase; DNA d 96.5 0.0015 5.2E-08 60.4 4.2 25 412-436 24-48 (149)
398 3tr5_A RF-3, peptide chain rel 96.5 0.0037 1.3E-07 69.8 8.0 86 506-605 81-167 (528)
399 1jbk_A CLPB protein; beta barr 96.5 0.0035 1.2E-07 57.9 6.6 27 411-437 43-69 (195)
400 1uj2_A Uridine-cytidine kinase 96.5 0.0019 6.5E-08 64.5 5.1 43 408-450 19-66 (252)
401 2x2e_A Dynamin-1; nitration, h 96.5 0.0091 3.1E-07 62.8 10.5 23 412-434 32-54 (353)
402 2c78_A Elongation factor TU-A; 96.5 0.0037 1.3E-07 67.1 7.5 28 412-439 12-39 (405)
403 2xex_A Elongation factor G; GT 96.5 0.0084 2.9E-07 69.1 10.9 83 506-602 74-157 (693)
404 2if2_A Dephospho-COA kinase; a 96.5 0.0012 4E-08 63.3 3.2 22 412-433 2-23 (204)
405 1jjv_A Dephospho-COA kinase; P 96.5 0.0013 4.6E-08 63.1 3.6 22 412-433 3-24 (206)
406 2o5v_A DNA replication and rep 96.5 0.00084 2.9E-08 71.4 2.3 61 514-583 266-330 (359)
407 3k1j_A LON protease, ATP-depen 96.5 0.0016 5.5E-08 73.8 4.7 47 396-444 47-94 (604)
408 2qor_A Guanylate kinase; phosp 96.5 0.0012 4E-08 63.8 2.9 24 412-435 13-36 (204)
409 3th5_A RAS-related C3 botulinu 95.5 0.00047 1.6E-08 65.9 0.0 23 411-433 30-52 (204)
410 4hlc_A DTMP kinase, thymidylat 96.5 0.022 7.6E-07 55.5 12.0 48 412-461 3-50 (205)
411 1nn5_A Similar to deoxythymidy 96.4 0.0058 2E-07 58.6 7.6 35 411-445 9-43 (215)
412 4gzl_A RAS-related C3 botulinu 96.4 0.0029 9.8E-08 60.7 5.3 69 507-586 78-147 (204)
413 2wwf_A Thymidilate kinase, put 96.4 0.0058 2E-07 58.5 7.4 34 411-444 10-43 (212)
414 3syl_A Protein CBBX; photosynt 96.4 0.1 3.4E-06 52.9 17.1 27 412-438 68-94 (309)
415 3cm0_A Adenylate kinase; ATP-b 96.4 0.002 6.9E-08 60.6 4.0 24 412-435 5-28 (186)
416 1y63_A LMAJ004144AAA protein; 96.4 0.0016 5.4E-08 61.8 3.2 31 402-434 3-33 (184)
417 1xzp_A Probable tRNA modificat 96.4 0.0024 8.2E-08 70.5 5.1 23 412-434 244-266 (482)
418 2qby_B CDC6 homolog 3, cell di 96.4 0.014 4.8E-07 60.9 10.8 41 409-449 43-91 (384)
419 2v54_A DTMP kinase, thymidylat 96.4 0.0038 1.3E-07 59.4 5.9 35 412-448 5-39 (204)
420 2j69_A Bacterial dynamin-like 96.4 0.015 5.2E-07 66.9 11.9 23 412-434 70-92 (695)
421 2rhm_A Putative kinase; P-loop 96.3 0.0024 8.2E-08 60.2 4.3 25 411-435 5-29 (193)
422 2z0h_A DTMP kinase, thymidylat 96.3 0.0064 2.2E-07 57.4 7.2 34 413-446 2-35 (197)
423 4dkx_A RAS-related protein RAB 96.3 0.016 5.4E-07 56.9 10.2 99 507-615 62-165 (216)
424 3kb2_A SPBC2 prophage-derived 96.3 0.0021 7.2E-08 59.3 3.7 35 412-451 2-36 (173)
425 1wb1_A Translation elongation 96.3 0.0066 2.3E-07 66.9 8.1 96 506-615 72-178 (482)
426 3m6a_A ATP-dependent protease 96.3 0.0013 4.4E-08 73.7 2.5 43 399-444 99-141 (543)
427 2plr_A DTMP kinase, probable t 96.3 0.004 1.4E-07 59.4 5.6 32 412-444 5-36 (213)
428 1jny_A EF-1-alpha, elongation 96.3 0.026 8.8E-07 61.2 12.6 23 412-434 7-29 (435)
429 1dar_A EF-G, elongation factor 96.3 0.016 5.5E-07 66.7 11.4 79 506-598 76-154 (691)
430 2orw_A Thymidine kinase; TMTK, 96.3 0.0043 1.5E-07 59.4 5.6 35 412-446 4-38 (184)
431 2ga8_A Hypothetical 39.9 kDa p 96.3 0.0034 1.2E-07 66.6 5.3 39 398-436 11-49 (359)
432 1tev_A UMP-CMP kinase; ploop, 96.2 0.0028 9.6E-08 59.6 4.1 25 411-435 3-27 (196)
433 2g3y_A GTP-binding protein GEM 96.2 0.015 5.3E-07 56.6 9.6 21 412-432 38-58 (211)
434 2f9l_A RAB11B, member RAS onco 96.2 0.0025 8.6E-08 60.6 3.7 23 412-434 6-28 (199)
435 3dpu_A RAB family protein; roc 96.2 0.0098 3.4E-07 66.1 8.8 97 506-616 97-198 (535)
436 2p65_A Hypothetical protein PF 96.2 0.0053 1.8E-07 56.7 5.5 27 411-437 43-69 (187)
437 1qhx_A CPT, protein (chloramph 96.1 0.0028 9.6E-08 59.1 3.5 35 412-449 4-38 (178)
438 1d2e_A Elongation factor TU (E 96.1 0.026 9E-07 60.3 11.5 27 412-438 4-30 (397)
439 2c95_A Adenylate kinase 1; tra 96.1 0.0034 1.2E-07 59.3 4.0 25 411-435 9-33 (196)
440 3qks_A DNA double-strand break 96.1 0.0035 1.2E-07 60.9 4.2 25 412-436 24-48 (203)
441 1ni3_A YCHF GTPase, YCHF GTP-b 96.1 0.002 6.9E-08 69.3 2.6 25 407-433 18-42 (392)
442 3gj0_A GTP-binding nuclear pro 96.1 0.0091 3.1E-07 57.6 6.9 97 507-614 64-163 (221)
443 3sr0_A Adenylate kinase; phosp 96.1 0.021 7.3E-07 55.7 9.6 36 413-452 2-37 (206)
444 3ice_A Transcription terminati 96.0 0.0072 2.4E-07 64.9 6.4 51 402-455 167-219 (422)
445 3avx_A Elongation factor TS, e 96.0 0.053 1.8E-06 65.5 14.5 114 322-437 182-322 (1289)
446 3d3q_A TRNA delta(2)-isopenten 96.0 0.0052 1.8E-07 64.8 5.2 34 412-450 8-41 (340)
447 4ag6_A VIRB4 ATPase, type IV s 96.0 0.0051 1.8E-07 65.5 5.3 37 412-448 36-72 (392)
448 2rdo_7 EF-G, elongation factor 96.0 0.025 8.4E-07 65.3 11.2 77 506-596 81-157 (704)
449 3trf_A Shikimate kinase, SK; a 96.0 0.004 1.4E-07 58.5 3.9 24 412-435 6-29 (185)
450 1w1w_A Structural maintenance 96.0 0.0029 1E-07 68.4 3.2 62 514-582 334-395 (430)
451 2ze6_A Isopentenyl transferase 96.0 0.0041 1.4E-07 62.4 4.0 33 412-449 2-34 (253)
452 2pbr_A DTMP kinase, thymidylat 96.0 0.0071 2.4E-07 56.8 5.5 32 413-444 2-33 (195)
453 2xau_A PRE-mRNA-splicing facto 96.0 0.032 1.1E-06 65.0 12.0 53 412-466 110-165 (773)
454 2chg_A Replication factor C sm 96.0 0.0065 2.2E-07 57.5 5.1 27 412-438 39-65 (226)
455 1uf9_A TT1252 protein; P-loop, 96.0 0.0045 1.6E-07 58.7 4.1 26 409-434 6-31 (203)
456 2jaq_A Deoxyguanosine kinase; 95.9 0.0042 1.4E-07 58.9 3.8 24 413-436 2-25 (205)
457 1l8q_A Chromosomal replication 95.9 0.0043 1.5E-07 64.0 4.0 38 412-449 38-75 (324)
458 1f60_A Elongation factor EEF1A 95.9 0.1 3.5E-06 56.9 15.1 23 412-434 8-30 (458)
459 1ofh_A ATP-dependent HSL prote 95.9 0.017 5.9E-07 58.3 8.4 37 411-450 50-86 (310)
460 3o47_A ADP-ribosylation factor 95.9 0.0061 2.1E-07 63.7 5.0 73 506-587 208-280 (329)
461 1qf9_A UMP/CMP kinase, protein 95.9 0.0053 1.8E-07 57.5 4.1 25 411-435 6-30 (194)
462 3hjn_A DTMP kinase, thymidylat 95.9 0.12 4E-06 49.9 13.8 48 413-461 2-49 (197)
463 1ukz_A Uridylate kinase; trans 95.9 0.0051 1.8E-07 58.7 4.0 28 408-435 12-39 (203)
464 2bwj_A Adenylate kinase 5; pho 95.9 0.005 1.7E-07 58.3 3.9 24 412-435 13-36 (199)
465 2cdn_A Adenylate kinase; phosp 95.8 0.0058 2E-07 58.4 4.2 28 408-435 17-44 (201)
466 2wji_A Ferrous iron transport 95.8 0.004 1.4E-07 57.4 2.9 94 508-614 51-153 (165)
467 3exa_A TRNA delta(2)-isopenten 95.8 0.013 4.3E-07 61.3 6.9 34 411-449 3-36 (322)
468 3r20_A Cytidylate kinase; stru 95.8 0.0054 1.9E-07 61.3 4.0 25 411-435 9-33 (233)
469 2dhr_A FTSH; AAA+ protein, hex 95.8 0.01 3.6E-07 65.7 6.5 47 397-449 54-100 (499)
470 3cmw_A Protein RECA, recombina 95.7 0.019 6.4E-07 71.9 9.3 89 412-518 1432-1521(1706)
471 3lvq_E ARF-GAP with SH3 domain 95.7 0.017 6E-07 63.3 8.2 72 506-586 365-436 (497)
472 1zak_A Adenylate kinase; ATP:A 95.7 0.0049 1.7E-07 60.0 3.4 26 410-435 4-29 (222)
473 2vli_A Antibiotic resistance p 95.7 0.0036 1.2E-07 58.5 2.4 26 410-435 4-29 (183)
474 3iij_A Coilin-interacting nucl 95.7 0.0052 1.8E-07 57.6 3.4 24 412-435 12-35 (180)
475 1via_A Shikimate kinase; struc 95.7 0.0049 1.7E-07 57.6 3.2 23 413-435 6-28 (175)
476 1vht_A Dephospho-COA kinase; s 95.7 0.0061 2.1E-07 59.1 3.9 23 411-433 4-26 (218)
477 2obn_A Hypothetical protein; s 95.7 0.22 7.5E-06 52.5 16.0 184 412-629 153-347 (349)
478 3l0i_B RAS-related protein RAB 95.7 0.0028 9.6E-08 60.2 1.4 92 507-608 82-176 (199)
479 2wjg_A FEOB, ferrous iron tran 95.7 0.0051 1.7E-07 57.4 3.2 94 507-613 54-156 (188)
480 1zd8_A GTP:AMP phosphotransfer 95.7 0.0054 1.8E-07 60.0 3.4 25 411-435 7-31 (227)
481 1aky_A Adenylate kinase; ATP:A 95.7 0.0067 2.3E-07 58.9 4.0 25 411-435 4-28 (220)
482 3zvr_A Dynamin-1; hydrolase, D 95.7 0.017 6E-07 67.0 8.1 22 413-434 53-74 (772)
483 2nut_C Vesicle-trafficking pro 95.7 0.059 2E-06 52.1 10.7 114 1-120 2-123 (196)
484 3cmu_A Protein RECA, recombina 95.6 0.043 1.5E-06 69.7 12.0 118 406-543 1424-1560(2050)
485 1xx6_A Thymidine kinase; NESG, 95.6 0.013 4.3E-07 56.7 5.8 38 412-449 9-48 (191)
486 2qgz_A Helicase loader, putati 95.6 0.013 4.3E-07 60.8 6.1 37 412-448 153-190 (308)
487 1q3t_A Cytidylate kinase; nucl 95.6 0.0071 2.4E-07 59.6 4.0 26 410-435 15-40 (236)
488 4a0g_A Adenosylmethionine-8-am 95.6 0.27 9.3E-06 57.7 18.0 35 412-446 35-75 (831)
489 3r7w_A Gtpase1, GTP-binding pr 95.6 0.011 3.7E-07 61.0 5.5 78 507-587 52-129 (307)
490 2dby_A GTP-binding protein; GD 95.6 0.03 1E-06 59.6 9.0 23 413-435 3-25 (368)
491 3vqt_A RF-3, peptide chain rel 95.6 0.072 2.5E-06 59.6 12.4 84 507-604 100-184 (548)
492 3crm_A TRNA delta(2)-isopenten 95.5 0.0093 3.2E-07 62.5 4.7 34 411-449 5-38 (323)
493 2axn_A 6-phosphofructo-2-kinas 95.5 0.0084 2.9E-07 66.7 4.4 42 410-451 34-75 (520)
494 1ltq_A Polynucleotide kinase; 95.5 0.0061 2.1E-07 62.0 3.0 37 411-451 2-38 (301)
495 3foz_A TRNA delta(2)-isopenten 95.5 0.011 3.8E-07 61.6 5.0 35 410-449 9-43 (316)
496 1w5s_A Origin recognition comp 95.5 0.14 4.9E-06 53.7 13.7 40 410-449 49-96 (412)
497 2ywe_A GTP-binding protein LEP 95.4 0.17 5.7E-06 57.3 14.9 88 507-608 73-164 (600)
498 2gj8_A MNME, tRNA modification 95.4 0.0076 2.6E-07 56.1 3.3 22 412-433 5-26 (172)
499 3hws_A ATP-dependent CLP prote 95.4 0.039 1.3E-06 57.9 9.0 33 412-447 52-84 (363)
500 1w36_D RECD, exodeoxyribonucle 95.4 0.039 1.3E-06 62.5 9.5 46 412-460 165-214 (608)
No 1
>2fh5_A Signal recognition particle receptor alpha subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Homo sapiens} SCOP: d.110.4.4 PDB: 2go5_1
Probab=100.00 E-value=8.2e-48 Score=370.45 Aligned_cols=154 Identities=59% Similarity=0.950 Sum_probs=109.6
Q ss_pred CcceEEEeecCceEEEEeccCCCCCCchHHHHHHHhhhccccCCCceeecCeEEEEEEeccccEEEEEEeccccchhcHH
Q psy11993 1 MLDFFTIFSKGGIVLWYFQSASQIFTPSLNALIKSVILQERGGNQVFEHNGLVLKHKLDNEFDLVFVVGFQKILQLSYVD 80 (630)
Q Consensus 1 Mld~~~i~t~gG~vLw~~~~~~~~~~~~in~li~~~~leer~~~~~~~~~~~~l~w~~~n~~~lvfv~~yq~~l~l~y~d 80 (630)
|.|+|+||||||||||||++.++++++|||+||++||||||+++++|.+|+|+|||+++||||||||||||+||||+|||
T Consensus 10 ~~D~~~IfTkGGvVLWs~~~~~~~~~~~IN~LIr~VlLEER~~~~~y~~d~ytlkW~l~NEl~LVFVvVYQ~iL~L~YiD 89 (185)
T 2fh5_A 10 MVDFFTIFSKGGLVLWCFQGVSDSCTGPVNALIRSVLLQERGGNNSFTHEALTLKYKLDNQFELVFVVGFQKILTLTYVD 89 (185)
T ss_dssp SCSEEEEEETTSBEEEEEBTTTBSCCCHHHHHHHHTGGGC-------CCCCCEEEEEEETTTTEEEEEEESCGGGHHHHH
T ss_pred ceeEEEEEeCCeEEEEeecCCcccccchHHHHHHHhhhccccCCCceeEcCeEEEEEEeccCCEEEEEEEcccccchHHH
Confidence 89999999999999999987777899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhhcCCCcc----eecCccHHHHHHHHHHHHhhhhhhcCcccccchhhhcccccchhhhhhccCc
Q psy11993 81 KLLDDVHLEFRDKYKNELGSDMHL----YDYDFESTYNVLLKEAEEWSKVQACIPKQMRTFEESSKSKKTIASMIIDKNK 156 (630)
Q Consensus 81 ~ll~~~~~~f~~~~~~~l~~~~~~----~~~~f~~~f~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (630)
+||++|+++|+++|+++|++...+ ..|+||++|+++|+++|..++.++ ++.|++|+++.++++++++|+++++.
T Consensus 90 ~LL~~v~~~Fv~~Y~~~L~~~~~~~~~~~~~~Fd~~F~~~l~~~e~~~~~~~--~k~mr~fees~ks~k~~~~~i~~~~~ 167 (185)
T 2fh5_A 90 KLIDDVHRLFRDKYRTEIQQQSALSLLNGTFDFQNDFLRLLREAEESSKIRA--PTTMKKFEDSEKAKKPVRSMIETRGE 167 (185)
T ss_dssp HHHHHHHHHHHHHTHHHHHSSSTHHHHSCCCCCHHHHHHHHHHHHHHTC-------------------------------
T ss_pred HHHHHHHHHHHHHHHHHhhcccccccccccCchhHHHHHHHHHHHHHHHhhh--HHhhccHhhhhhhhhhhhhhcccccc
Confidence 999999999999999998652222 356899999999999999877555 78899999999999999999875433
No 2
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=100.00 E-value=2.9e-41 Score=357.28 Aligned_cols=286 Identities=38% Similarity=0.686 Sum_probs=247.6
Q ss_pred HhhhCCccCCccchHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCccCCccchHHHHHHHHHHHHHHHcCCCcchh
Q psy11993 318 RGLVGSKNLTKSDMKPILEKMKDHLIAKNVAADIAVKLCDSVALKLEGKVLGTFESVANTVKSTLTDALVQILSPKRRVD 397 (630)
Q Consensus 318 ~~~~~~~~l~~~~l~~~l~~l~~~Li~~~V~~~ia~~l~~~v~~~l~g~~~~~~~~~~~~v~~~l~~~L~~il~~~~~~~ 397 (630)
.+.++...|+++++++.+++++.+|+++||+.+++.+|+++|++.+.++.+..+..+.+.+..++.+.|++++++....+
T Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~Ll~adv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~ 118 (328)
T 3e70_C 39 LDRILTVEIKEKDVDKALDELEIDLLEADVALEVVDALREKIKQKLVGKKVRIGTDKGKIIEEAVKEAVSEILETSRRID 118 (328)
T ss_dssp ---CCEEECCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTTCEEECC---CHHHHHHHHHHHHHHSCCSSCCC
T ss_pred HHHHhhccCCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcccCCccCHHHHHHHHHHHHHHHHhCCccccc
Confidence 34445788999999999999999999999999999999999999998887777777788899999999999999765444
Q ss_pred hhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccCCCcCCcch
Q psy11993 398 ILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHPAAKHGGR 477 (630)
Q Consensus 398 iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~~~~~tv~ 477 (630)
++. +.....+|++++|+||||||||||+++||+++.+.+|+|.+.++|+||.++.+|++.++..++.
T Consensus 119 ~~~---~~~~~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv---------- 185 (328)
T 3e70_C 119 LIE---EIRKAEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGV---------- 185 (328)
T ss_dssp HHH---HHHSSCSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTC----------
T ss_pred hhh---hcccCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCc----------
Confidence 321 1112344599999999999999999999999999999999999999999999999999988873
Q ss_pred hhhHhhhccCCCCHHHHHHHHHHHhhhcCCCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCccHHHHHH
Q psy11993 478 EMVQLFEKGYGKDPAEIAFRAISHARDMHIDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQLV 557 (630)
Q Consensus 478 env~l~~~~~~~d~~~ia~~ai~~a~~~~~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~Dav~ql~ 557 (630)
.++...++.++...+.+.+..+...++|++++||+|+.+.+..++.+|..+.++..|+..++++|++++++++++++
T Consensus 186 ---~~v~q~~~~~p~~~v~e~l~~~~~~~~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~~~~~~~~ 262 (328)
T 3e70_C 186 ---KVIKHSYGADPAAVAYDAIQHAKARGIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGNAIVEQAR 262 (328)
T ss_dssp ---EEECCCTTCCHHHHHHHHHHHHHHHTCSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTTHHHHHHH
T ss_pred ---eEEeccccCCHHHHHHHHHHHHHhccchhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHHHHHHHHH
Confidence 23333455677777777777777678999999999999999999999999888889999999999999999999999
Q ss_pred HHHHHHhhcccCCCCCCeeEEEEcccCCcCccHHHHHHHHHHhCCcEEEEecCCCCccCCCCCHHHHHHHhhC
Q psy11993 558 KFNNAMADHSLSDNPHLIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGTGQTYTDLKSLNAKAVVNALMK 630 (630)
Q Consensus 558 ~f~~~l~~~~~~~~~~~i~gIIlTK~D~~~~~~G~~ls~~~~~g~PI~fvg~Gq~v~DL~~~~~~~~v~~Ll~ 630 (630)
.|++.+ +++++|+||+|++ .++|.++++++.+|.||.|+|+||+|.||+.|+|+++++.||+
T Consensus 263 ~~~~~~----------~it~iilTKlD~~-a~~G~~l~~~~~~~~pi~~i~~Ge~v~dl~~~~~~~~~~~llg 324 (328)
T 3e70_C 263 QFNEAV----------KIDGIILTKLDAD-ARGGAALSISYVIDAPILFVGVGQGYDDLRPFEKEWFLERIFG 324 (328)
T ss_dssp HHHHHS----------CCCEEEEECGGGC-SCCHHHHHHHHHHTCCEEEEECSSSTTCEEECCHHHHHHHHTC
T ss_pred HHHHhc----------CCCEEEEeCcCCc-cchhHHHHHHHHHCCCEEEEeCCCCccccccCCHHHHHHHHhC
Confidence 988765 6999999999996 8999999999999999999999999999999999999999985
No 3
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=100.00 E-value=5.9e-41 Score=366.29 Aligned_cols=288 Identities=23% Similarity=0.423 Sum_probs=255.8
Q ss_pred chHHHHHHhhhCCccCCccchHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCccCCccchHHHHHHHHHHHHHHHc
Q psy11993 311 KGMFSLFRGLVGSKNLTKSDMKPILEKMKDHLIAKNVAADIAVKLCDSVALKLEGKVLGTFESVANTVKSTLTDALVQIL 390 (630)
Q Consensus 311 ~~~~~~~~~~~~~~~l~~~~l~~~l~~l~~~Li~~~V~~~ia~~l~~~v~~~l~g~~~~~~~~~~~~v~~~l~~~L~~il 390 (630)
.++.+.|+++.|...||++++++.+++++.+|++++|+.+++..|++.++..+.+..+.......+.+..++.++|++++
T Consensus 8 ~~l~~~~~~l~~~~~l~e~~~~~~l~ei~~~Ll~adv~~~~~~~~~~~v~~~~~~~~v~~~~~~~~~v~~~l~~eL~~~L 87 (443)
T 3dm5_A 8 KALANTLKKIARASSVDEALIKELVRDIQRALIQADVNVRLVLQLTREIQRRALEEKPPAGISKKEHIIKIVYEELTKFL 87 (443)
T ss_dssp HHHHHHHHHHHHCSCCCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCCCTTCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhhccccccCCcHHHHHHHHHHHHHHHh
Confidence 46778999999999999999999999999999999999999999999999988766544434456778899999999999
Q ss_pred CCCcchhhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccCC
Q psy11993 391 SPKRRVDILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHP 470 (630)
Q Consensus 391 ~~~~~~~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~ 470 (630)
++.... + . ..++|.+|+|+|++||||||++++||.++...+.+|+++++|+||+++++||+.|+...+.
T Consensus 88 ~~~~~~-~----~---~~~~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gv--- 156 (443)
T 3dm5_A 88 GTEAKP-I----E---IKEKPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHI--- 156 (443)
T ss_dssp TSSCCC-C----C---CCSSSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTC---
T ss_pred cCcccc-c----c---cCCCCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCC---
Confidence 863211 1 1 1235799999999999999999999999999999999999999999999999999988873
Q ss_pred CcCCcchhhhHhhhccCCCCHHHHHHHHHHHhhhcCCCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCc
Q psy11993 471 AAKHGGREMVQLFEKGYGKDPAEIAFRAISHARDMHIDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGN 550 (630)
Q Consensus 471 ~~~~tv~env~l~~~~~~~d~~~ia~~ai~~a~~~~~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~ 550 (630)
+++....+.++..++.+++..+...++|+++|||+|+.+.+..++.+|.++.....|+.+++|.+++.|+
T Consensus 157 ----------pv~~~~~~~dp~~i~~~al~~a~~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq 226 (443)
T 3dm5_A 157 ----------EVFGNPQEKDAIKLAKEGVDYFKSKGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQ 226 (443)
T ss_dssp ----------EEECCTTCCCHHHHHHHHHHHHHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGG
T ss_pred ----------cEEecCCCCCHHHHHHHHHHHHHhCCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCch
Confidence 3444445678888888999988888899999999999999999999999998889999999999999999
Q ss_pred cHHHHHHHHHHHHhhcccCCCCCCeeEEEEcccCCcCccHHHHHHHHHHhCCcEEEEecCCCCccCCCCCHHHHHHHhhC
Q psy11993 551 EAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGTGQTYTDLKSLNAKAVVNALMK 630 (630)
Q Consensus 551 Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK~D~~~~~~G~~ls~~~~~g~PI~fvg~Gq~v~DL~~~~~~~~v~~Ll~ 630 (630)
++++++..|++.+ .++|+|+||+|++ .++|.++++.+.+|.||.|+|+||++.||+.|+|+++++.||+
T Consensus 227 ~a~~~a~~f~~~~----------~i~gVIlTKlD~~-~~gG~~ls~~~~~g~PI~fig~Ge~vddL~~f~~~~~~~~llg 295 (443)
T 3dm5_A 227 QAYNQALAFKEAT----------PIGSIIVTKLDGS-AKGGGALSAVAATGAPIKFIGTGEKIDDIEPFDPPRFVSRLLG 295 (443)
T ss_dssp GHHHHHHHHHHSC----------TTEEEEEECCSSC-SSHHHHHHHHHTTCCCEEEEECSSSTTCEEECCHHHHHHHHTT
T ss_pred hHHHHHHHHHhhC----------CCeEEEEECCCCc-ccccHHHHHHHHHCCCEEEEEcCCChHHhhhCCHHHHHHHHcC
Confidence 9999998888654 6999999999997 8999999999999999999999999999999999999999984
No 4
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=100.00 E-value=4.1e-40 Score=359.46 Aligned_cols=290 Identities=23% Similarity=0.416 Sum_probs=255.1
Q ss_pred cchHHHHHHhhhCCccCCccchHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCccCCccchHHHHHHHHHHHHHHH
Q psy11993 310 NKGMFSLFRGLVGSKNLTKSDMKPILEKMKDHLIAKNVAADIAVKLCDSVALKLEGKVLGTFESVANTVKSTLTDALVQI 389 (630)
Q Consensus 310 ~~~~~~~~~~~~~~~~l~~~~l~~~l~~l~~~Li~~~V~~~ia~~l~~~v~~~l~g~~~~~~~~~~~~v~~~l~~~L~~i 389 (630)
..++.+.|+++.|...||++++++.+++++.+|++++|+.+++..++++++..+.+..+...-...+.+..++.++|.++
T Consensus 3 ~~~l~~~~~~l~~~~~l~e~~~~~~l~el~~~Ll~aDv~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~v~~~v~~eL~~~ 82 (433)
T 3kl4_A 3 LENIRDAVRKFLTGSTPYEKAVDEFIKDLQKSLISSDVNVKLVFSLTAKIKERLNKEKPPSVLERKEWFISIVYDELSKL 82 (433)
T ss_dssp CTTHHHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHSCCCTTCCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhcccccccCChHHHHHHHHHHHHHHh
Confidence 45678899999999999999999999999999999999999999999999998876644433345677889999999999
Q ss_pred cCCCcchhhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccC
Q psy11993 390 LSPKRRVDILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLH 469 (630)
Q Consensus 390 l~~~~~~~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~ 469 (630)
+++.....+ ...++|.+++|+|||||||||++++||.++.+.+++|+++++|+||+++.+||+.++...+.
T Consensus 83 L~~~~~~~~-------~~~~~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv-- 153 (433)
T 3kl4_A 83 FGGDKEPNV-------NPTKLPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGV-- 153 (433)
T ss_dssp HCSSSCCCC-------SCCSSSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTC--
T ss_pred cCccccccc-------cccCCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCC--
Confidence 986432111 11235699999999999999999999999999999999999999999999999999988763
Q ss_pred CCcCCcchhhhHhhhccCCCCHHHHHHHHHHHhhhcCCCeeeeccccchh--chHHHHHHHHhhhhhcCCCeEEEEeccc
Q psy11993 470 PAAKHGGREMVQLFEKGYGKDPAEIAFRAISHARDMHIDVVLIDTAGRMQ--DNEPLMRALAKLVKVNQPDLLLFVGEAL 547 (630)
Q Consensus 470 ~~~~~tv~env~l~~~~~~~d~~~ia~~ai~~a~~~~~D~vlIDTaGr~~--~~~~L~~aL~kl~~~~~Pd~VLlV~E~~ 547 (630)
+++....+.++..++..++..+...++|+++|||+|+.+ .+..++.++.++....+|+.+++|.+++
T Consensus 154 -----------~~~~~~~~~dp~~i~~~al~~a~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~ 222 (433)
T 3kl4_A 154 -----------QVYGEPNNQNPIEIAKKGVDIFVKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDAS 222 (433)
T ss_dssp -----------CEECCTTCSCHHHHHHHHHHHTTTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGG
T ss_pred -----------ceeeccccCCHHHHHHHHHHHHHhcCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCc
Confidence 333333456788888888888887789999999999999 8999999999999989999999999999
Q ss_pred cCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcccCCcCccHHHHHHHHHHhCCcEEEEecCCCCccCCCCCHHHHHHH
Q psy11993 548 VGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGTGQTYTDLKSLNAKAVVNA 627 (630)
Q Consensus 548 ~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK~D~~~~~~G~~ls~~~~~g~PI~fvg~Gq~v~DL~~~~~~~~v~~ 627 (630)
.|+++.+++..|++.+ .++|||+||+|+. .++|+++++.+.+|.||.|+|+||++.||+.|+|+++++.
T Consensus 223 ~gq~a~~~a~~f~~~~----------~~~gVIlTKlD~~-a~~G~als~~~~~g~Pi~fig~Ge~v~dL~~f~p~~~~~~ 291 (433)
T 3kl4_A 223 IGQKAYDLASRFHQAS----------PIGSVIITKMDGT-AKGGGALSAVVATGATIKFIGTGEKIDELETFNAKRFVSR 291 (433)
T ss_dssp GGGGGHHHHHHHHHHC----------SSEEEEEECGGGC-SCHHHHHHHHHHHTCEEEEEECCSSSSCEEECCHHHHHHH
T ss_pred cchHHHHHHHHHhccc----------CCcEEEEeccccc-ccchHHHHHHHHHCCCEEEEECCCChHhCccCCHHHHHHH
Confidence 9999999999998776 6899999999997 8999999999999999999999999999999999999998
Q ss_pred hhC
Q psy11993 628 LMK 630 (630)
Q Consensus 628 Ll~ 630 (630)
||+
T Consensus 292 llg 294 (433)
T 3kl4_A 292 ILG 294 (433)
T ss_dssp HHC
T ss_pred hcC
Confidence 874
No 5
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=100.00 E-value=1.5e-38 Score=346.55 Aligned_cols=287 Identities=29% Similarity=0.411 Sum_probs=252.6
Q ss_pred chHHHHHHhhhCCccCCccchHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCccCCccchHHHHHHHHHHHHHHHc
Q psy11993 311 KGMFSLFRGLVGSKNLTKSDMKPILEKMKDHLIAKNVAADIAVKLCDSVALKLEGKVLGTFESVANTVKSTLTDALVQIL 390 (630)
Q Consensus 311 ~~~~~~~~~~~~~~~l~~~~l~~~l~~l~~~Li~~~V~~~ia~~l~~~v~~~l~g~~~~~~~~~~~~v~~~l~~~L~~il 390 (630)
.++.+.|+++.|++.|+++++.+.+++++.+|+++||+.+++.+|+++|+....|..+.......+.+..++.+.|++++
T Consensus 7 ~~l~~~~~~l~~~~~~~e~~~~~~l~e~~~~Ll~adv~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~L~~~~ 86 (425)
T 2ffh_A 7 ARLQEAIGRLRGRGRITEEDLKATLREIRRALMDADVNLEVTRDFVERVREEALGKQVLESLTPAEVILATVYEALKEAL 86 (425)
T ss_dssp HHHHHHHHTTTTCCSCCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTTGGGCSCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHccccccccCCcHHHHHHHHHHHHHHHh
Confidence 46778999999999999999999999999999999999999999999999988887665445567788899999999999
Q ss_pred CCCcchhhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccCC
Q psy11993 391 SPKRRVDILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHP 470 (630)
Q Consensus 391 ~~~~~~~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~ 470 (630)
++.. +++++. +|++++|+|++||||||++.+||+++.+.+++|+++++|++|+++.+||+.++...+
T Consensus 87 ~~~~-----~~i~l~----~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~qL~~~~~~~g---- 153 (425)
T 2ffh_A 87 GGEA-----RLPVLK----DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVG---- 153 (425)
T ss_dssp TSSC-----CCCCCC----SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHHHHHHHHHHHT----
T ss_pred CCCc-----ccccCC----CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhHHHHHHhcccCC----
Confidence 8643 235554 458999999999999999999999999999999999999999999999998877665
Q ss_pred CcCCcchhhhHhhhccCCCCHHHHHHHHHHHhhhcCCCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCc
Q psy11993 471 AAKHGGREMVQLFEKGYGKDPAEIAFRAISHARDMHIDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGN 550 (630)
Q Consensus 471 ~~~~tv~env~l~~~~~~~d~~~ia~~ai~~a~~~~~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~ 550 (630)
++++..+.+.++..++.++++.+...+||+|+|||||+++.+..++.+|.++.....|+.+++|.+++.++
T Consensus 154 ---------v~v~~~~~~~~p~~i~~~~l~~~~~~~~DvVIIDTaG~l~~d~~l~~el~~i~~~~~pd~vlLVvDa~tgq 224 (425)
T 2ffh_A 154 ---------VPVLEVMDGESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQ 224 (425)
T ss_dssp ---------CCEEECCTTCCHHHHHHHHHHHHHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTT
T ss_pred ---------ccEEecCCCCCHHHHHHHHHHHHHHCCCCEEEEcCCCcccccHHHHHHHHHhhhccCCceEEEEEeccchH
Confidence 33444444467888877888877667899999999999998889999998888888999999999999999
Q ss_pred cHHHHHHHHHHHHhhcccCCCCCCeeEEEEcccCCcCccHHHHHHHHHHhCCcEEEEecCCCCccCCCCCHHHHHHHhhC
Q psy11993 551 EAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGTGQTYTDLKSLNAKAVVNALMK 630 (630)
Q Consensus 551 Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK~D~~~~~~G~~ls~~~~~g~PI~fvg~Gq~v~DL~~~~~~~~v~~Ll~ 630 (630)
++++++..|+..+ +++|+|+||+|+. .++|.++++.+.+|.||.|+|+||++.||++|+|+++++.|++
T Consensus 225 ~av~~a~~f~~~l----------~i~GVIlTKlD~~-~~~g~alsi~~~~g~PI~flg~Ge~~~dl~~f~~~~~a~~ilg 293 (425)
T 2ffh_A 225 EALSVARAFDEKV----------GVTGLVLTKLDGD-ARGGAALSARHVTGKPIYFAGVSEKPEGLEPFYPERLAGRILG 293 (425)
T ss_dssp HHHHHHHHHHHHT----------CCCEEEEESGGGC-SSCHHHHHHHHHHCCCEEEEECSSSGGGEEECCHHHHHHHHHT
T ss_pred HHHHHHHHHHhcC----------CceEEEEeCcCCc-ccHHHHHHHHHHHCCCEEEEeCCCChhhccccCHHHHHHHHhc
Confidence 9999988887655 6899999999996 8999999999999999999999999999999999999999874
No 6
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=100.00 E-value=1.7e-38 Score=331.79 Aligned_cols=288 Identities=24% Similarity=0.417 Sum_probs=247.1
Q ss_pred chHHHHHHhhhCCccCCccchHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCccCCccchHHHHHHHHHHHHHHHc
Q psy11993 311 KGMFSLFRGLVGSKNLTKSDMKPILEKMKDHLIAKNVAADIAVKLCDSVALKLEGKVLGTFESVANTVKSTLTDALVQIL 390 (630)
Q Consensus 311 ~~~~~~~~~~~~~~~l~~~~l~~~l~~l~~~Li~~~V~~~ia~~l~~~v~~~l~g~~~~~~~~~~~~v~~~l~~~L~~il 390 (630)
.++.+.|+++.|++.|+++++++.+++++++|+++||+.+++.+|++.+++...|..+.......+.+..++.+.|.+++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 84 (297)
T 1j8m_F 5 DNLRDTVRKFLTGSSSYDKAVEDFIKELQKSLISADVNVKLVFSLTNKIKERLKNEKPPTYIERREWFIKIVYDELSNLF 84 (297)
T ss_dssp HHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCCCTTCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhccccccCChHHHHHHHHHHHHHHHh
Confidence 45678999999999999999999999999999999999999999999999988776544333455778889999999999
Q ss_pred CCCcchhhhhh-hhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccC
Q psy11993 391 SPKRRVDILRD-ALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLH 469 (630)
Q Consensus 391 ~~~~~~~iL~~-i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~ 469 (630)
++.. .+ +++... +.+++|+|++|+||||++.+||+++.+.+++|+++++|++|+++.+|++.++...+.
T Consensus 85 ~~~~-----~~~i~~~~~---~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v-- 154 (297)
T 1j8m_F 85 GGDK-----EPKVIPDKI---PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGV-- 154 (297)
T ss_dssp TCSC-----CCCCSCSSS---SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTC--
T ss_pred cccc-----ccccccCCC---CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCe--
Confidence 8643 23 444432 599999999999999999999999999999999999999999999999988776653
Q ss_pred CCcCCcchhhhHhhhccCCCCHHHHHHHHHHHhhhcCCCeeeeccccchh--chHHHHHHHHhhhhhcCCCeEEEEeccc
Q psy11993 470 PAAKHGGREMVQLFEKGYGKDPAEIAFRAISHARDMHIDVVLIDTAGRMQ--DNEPLMRALAKLVKVNQPDLLLFVGEAL 547 (630)
Q Consensus 470 ~~~~~tv~env~l~~~~~~~d~~~ia~~ai~~a~~~~~D~vlIDTaGr~~--~~~~L~~aL~kl~~~~~Pd~VLlV~E~~ 547 (630)
.++....+.++..++.++++.+...+||+|+|||||+.+ .+..++.+|.++.....|+.+++|.++.
T Consensus 155 -----------~v~~~~~~~~p~~~~~~~l~~~~~~~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~ 223 (297)
T 1j8m_F 155 -----------PVYGEPGEKDVVGIAKRGVEKFLSEKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDAS 223 (297)
T ss_dssp -----------CEECCTTCCCHHHHHHHHHHHHHHTTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGG
T ss_pred -----------EEEecCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCC
Confidence 233222346788877788887776789999999999999 7778888888777777899999999999
Q ss_pred cCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcccCCcCccHHHHHHHHHHhCCcEEEEecCCCCccCCCCCHHHHHHH
Q psy11993 548 VGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGTGQTYTDLKSLNAKAVVNA 627 (630)
Q Consensus 548 ~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK~D~~~~~~G~~ls~~~~~g~PI~fvg~Gq~v~DL~~~~~~~~v~~ 627 (630)
.+.+++.+++.|++.+ ++.|+|+||+|.. .++|.++++.+.++.||.|+|+||+++||++|+|+++++.
T Consensus 224 ~g~~~~~~~~~~~~~~----------~i~gvVlnk~D~~-~~~g~~~~~~~~~~~pi~~i~~Ge~v~dl~~f~~~~~~~~ 292 (297)
T 1j8m_F 224 IGQKAYDLASKFNQAS----------KIGTIIITKMDGT-AKGGGALSAVAATGATIKFIGTGEKIDELEVFNPRRFVAR 292 (297)
T ss_dssp GGGGHHHHHHHHHHTC----------TTEEEEEECGGGC-TTHHHHHHHHHTTTCCEEEEECSSSTTCEEECCHHHHHHT
T ss_pred chHHHHHHHHHHHhhC----------CCCEEEEeCCCCC-cchHHHHHHHHHHCcCEEEEeCCCChhhcccCCHHHHHHH
Confidence 9999988887776532 6899999999997 7999999999999999999999999999999999999999
Q ss_pred hhC
Q psy11993 628 LMK 630 (630)
Q Consensus 628 Ll~ 630 (630)
||+
T Consensus 293 ll~ 295 (297)
T 1j8m_F 293 LHH 295 (297)
T ss_dssp TCT
T ss_pred HhC
Confidence 884
No 7
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=100.00 E-value=8.7e-39 Score=352.12 Aligned_cols=275 Identities=32% Similarity=0.474 Sum_probs=229.7
Q ss_pred HHhhhCCccCCccchHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCccCCccchHHHHHHHHHHHHHHHcCCCcch
Q psy11993 317 FRGLVGSKNLTKSDMKPILEKMKDHLIAKNVAADIAVKLCDSVALKLEGKVLGTFESVANTVKSTLTDALVQILSPKRRV 396 (630)
Q Consensus 317 ~~~~~~~~~l~~~~l~~~l~~l~~~Li~~~V~~~ia~~l~~~v~~~l~g~~~~~~~~~~~~v~~~l~~~L~~il~~~~~~ 396 (630)
|.++++++.|++ +.+++|+.+|+++||+.+++.+|+++++..+.++.+.. .+.++.++.+.|.++|++.
T Consensus 214 l~~~~~~~~ide----~~l~el~~~Ll~aDv~~~~~~~l~~~l~~~~~~~~~~~----~~~~~~~l~~~l~~~l~~~--- 282 (503)
T 2yhs_A 214 FISLFRGKKIDD----DLFEELEEQLLIADVGVETTRKIITNLTEGASRKQLRD----AEALYGLLKEEMGEILAKV--- 282 (503)
T ss_dssp HHHHHTTCBCSH----HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHTCCB----GGGHHHHHHHHHHHHHHTT---
T ss_pred HHHHhccCCCCH----HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhccCCC----HHHHHHHHHHHHHHHhCCC---
Confidence 344455566775 48899999999999999999999999998876643333 2356677888888888653
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccCCCcCCcc
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHPAAKHGG 476 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~~~~~tv 476 (630)
.++++|.+..| ++++|+||||||||||+++|++++.+.+|+|+|.++|+||.++.+||+.|..+.+.
T Consensus 283 --~~~Isl~i~~G--eVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I--------- 349 (503)
T 2yhs_A 283 --DEPLNVEGKAP--FVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNI--------- 349 (503)
T ss_dssp --BCCCCCCSCTT--EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTC---------
T ss_pred --CCCceeeccCC--eEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCc---------
Confidence 23577777777 99999999999999999999999999999999999999999889999887554432
Q ss_pred hhhhHhhhccCCCCHHHHHHHHHHHhhhcCCCeeeeccccchhchHHHHHHHHhhhhhc------CCCeEEEEeccccCc
Q psy11993 477 REMVQLFEKGYGKDPAEIAFRAISHARDMHIDVVLIDTAGRMQDNEPLMRALAKLVKVN------QPDLLLFVGEALVGN 550 (630)
Q Consensus 477 ~env~l~~~~~~~d~~~ia~~ai~~a~~~~~D~vlIDTaGr~~~~~~L~~aL~kl~~~~------~Pd~VLlV~E~~~g~ 550 (630)
.++....+.++...+.+.+.++...++|+++|||+|+++.+..+|..|.++..+. .|+.+||++++++|+
T Consensus 350 ----~vV~Q~~~~~p~~tV~e~l~~a~~~~~DvVLIDTaGrl~~~~~lm~EL~kiv~iar~l~~~~P~evLLvLDattGq 425 (503)
T 2yhs_A 350 ----PVIAQHTGADSASVIFDAIQAAKARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQ 425 (503)
T ss_dssp ----CEECCSTTCCHHHHHHHHHHHHHHTTCSEEEECCCCSCCCHHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGTH
T ss_pred ----eEEecccCcCHHHHHHHHHHHHHhcCCCEEEEeCCCccchhhhHHHHHHHHHHHHHHhccCCCCeeEEEecCcccH
Confidence 1222223345666677777777778899999999999999999999888776543 488999999999999
Q ss_pred cHHHHHHHHHHHHhhcccCCCCCCeeEEEEcccCCcCccHHHHHHHHHHhCCcEEEEecCCCCccCCCCCHHHHHHHhhC
Q psy11993 551 EAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGTGQTYTDLKSLNAKAVVNALMK 630 (630)
Q Consensus 551 Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK~D~~~~~~G~~ls~~~~~g~PI~fvg~Gq~v~DL~~~~~~~~v~~Ll~ 630 (630)
+++++++.|++.+ +++++|+||+|++ .++|.++++++.+++||.|+|+||++.||+.|++++|++.||+
T Consensus 426 ~al~~ak~f~~~~----------~itgvIlTKLD~t-akgG~~lsi~~~~~~PI~fig~Ge~vdDL~~f~~~~~v~~llg 494 (503)
T 2yhs_A 426 NAVSQAKLFHEAV----------GLTGITLTKLDGT-AKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDFIEALFA 494 (503)
T ss_dssp HHHHHHHHHHHHT----------CCSEEEEECGGGC-SCCTHHHHHHHHHCCCEEEEECSSSGGGEEECCHHHHHHHHHC
T ss_pred HHHHHHHHHHhhc----------CCCEEEEEcCCCc-ccccHHHHHHHHHCCCEEEEecCCChhhcccCCHHHHHHHHhc
Confidence 9999999998776 6999999999997 8999999999999999999999999999999999999999984
No 8
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=100.00 E-value=1.1e-38 Score=336.55 Aligned_cols=288 Identities=29% Similarity=0.430 Sum_probs=233.7
Q ss_pred cchHHHHHHhhhCC-ccCCccchHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCccCCccchHHHHHHHHHHHHHH
Q psy11993 310 NKGMFSLFRGLVGS-KNLTKSDMKPILEKMKDHLIAKNVAADIAVKLCDSVALKLEGKVLGTFESVANTVKSTLTDALVQ 388 (630)
Q Consensus 310 ~~~~~~~~~~~~~~-~~l~~~~l~~~l~~l~~~Li~~~V~~~ia~~l~~~v~~~l~g~~~~~~~~~~~~v~~~l~~~L~~ 388 (630)
+.++.+.|++++++ +.++++ .+++++++|+++||+.+++.+|++++++.+.+..+. ..++.++.+.|.+
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~----~~~~l~~~L~~~dv~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~l~~ 84 (320)
T 1zu4_A 15 AFNFSKDIKKLSKKYKQADDE----FFEELEDVLIQTDMGMKMVLKVSNLVRKKTKRDTSF------ENIKDALVESLYQ 84 (320)
T ss_dssp HHHHHHHHHHHHHTCCCCSHH----HHHHHHHHHHHTTCCHHHHHHHHHHHHHHCCTTCCH------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCCHH----HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhchhH------HHHHHHHHHHHHH
Confidence 34677788888765 678764 789999999999999999999999999988765322 2288899999999
Q ss_pred HcCCCcchhhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhccc
Q psy11993 389 ILSPKRRVDILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSL 468 (630)
Q Consensus 389 il~~~~~~~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~ 468 (630)
++++....+++.+++|...++ ++++|+|+||+||||++++||+++.+.+++|+++++|+||.++.+|++.|....
T Consensus 85 ~l~~~~~~~~~~~l~~~~~~~--~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~r~~a~~ql~~~~~~~--- 159 (320)
T 1zu4_A 85 AYTDNDWTNKKYRIDFKENRL--NIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFRAGATQQLEEWIKTR--- 159 (320)
T ss_dssp HHHCSCC----CCCCCCTTSC--EEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSCHHHHHHHHHHHTTT---
T ss_pred HhCcccccccccCccccCCCC--eEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHhcc---
Confidence 998654333445677766555 999999999999999999999999999999999999999999989988876410
Q ss_pred CCCcCCcchhhhHhh-hccCCCCHHHHHHHHHHHhhhcCCCeeeeccccchhchHHHHHHHHhhhhhc------CCCeEE
Q psy11993 469 HPAAKHGGREMVQLF-EKGYGKDPAEIAFRAISHARDMHIDVVLIDTAGRMQDNEPLMRALAKLVKVN------QPDLLL 541 (630)
Q Consensus 469 ~~~~~~tv~env~l~-~~~~~~d~~~ia~~ai~~a~~~~~D~vlIDTaGr~~~~~~L~~aL~kl~~~~------~Pd~VL 541 (630)
.+.++.++ ....+.++...+.+++..+...+||+|+|||||+++.+..+|.+|.++..+. .|+.++
T Consensus 160 -------~~~~l~vip~~~~~~~p~~~~~~~l~~~~~~~yD~VIIDTpg~l~~~~~l~~eL~~~~~vi~~~~p~~~d~vl 232 (320)
T 1zu4_A 160 -------LNNKVDLVKANKLNADPASVVFDAIKKAKEQNYDLLLIDTAGRLQNKTNLMAELEKMNKIIQQVEKSAPHEVL 232 (320)
T ss_dssp -------SCTTEEEECCSSTTCCHHHHHHHHHHHHHHTTCSEEEEECCCCGGGHHHHHHHHHHHHHHHHTTCTTCCSEEE
T ss_pred -------ccCCceEEeCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCCCcccccHHHHHHHHHHHHHHhcccCCCCceEE
Confidence 01123333 2234456776667777666667899999999999998888888887665543 488999
Q ss_pred EEeccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcccCCcCccHHHHHHHHHHhCCcEEEEecCCCCccCCCCCH
Q psy11993 542 FVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGTGQTYTDLKSLNA 621 (630)
Q Consensus 542 lV~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK~D~~~~~~G~~ls~~~~~g~PI~fvg~Gq~v~DL~~~~~ 621 (630)
+|.+++.+++++.+++.|++. ..+.|+|+||+|++ .++|.++++.+.+|.||.|+|+||++.||++|+|
T Consensus 233 lVl~a~~~~~~l~~~~~~~~~----------~~i~GvVltk~d~~-~~~g~~~~~~~~~~~Pi~~i~~Ge~~~dl~~~~~ 301 (320)
T 1zu4_A 233 LVIDATTGQNGVIQAEEFSKV----------ADVSGIILTKMDST-SKGGIGLAIKELLNIPIKMIGVGEKVDDLLAFDI 301 (320)
T ss_dssp EEEEGGGTHHHHHHHHHHTTT----------SCCCEEEEECGGGC-SCTTHHHHHHHHHCCCEEEEECSSSTTCEEECCH
T ss_pred EEEECCCcHHHHHHHHHHhhc----------CCCcEEEEeCCCCC-CchhHHHHHHHHHCcCEEEEeCCCCccccccCCH
Confidence 999999998888887666532 36899999999997 7899999999999999999999999999999999
Q ss_pred HHHHHHhhC
Q psy11993 622 KAVVNALMK 630 (630)
Q Consensus 622 ~~~v~~Ll~ 630 (630)
+++++.||+
T Consensus 302 ~~~~~~ll~ 310 (320)
T 1zu4_A 302 DQYIVHLSS 310 (320)
T ss_dssp HHHHHHHTG
T ss_pred HHHHHHHhC
Confidence 999999984
No 9
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=100.00 E-value=5.2e-38 Score=329.41 Aligned_cols=272 Identities=31% Similarity=0.500 Sum_probs=228.4
Q ss_pred chHHHHHHhhhCCccCCccchHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCccCCccchHHHHHHHHHHHHHHHc
Q psy11993 311 KGMFSLFRGLVGSKNLTKSDMKPILEKMKDHLIAKNVAADIAVKLCDSVALKLEGKVLGTFESVANTVKSTLTDALVQIL 390 (630)
Q Consensus 311 ~~~~~~~~~~~~~~~l~~~~l~~~l~~l~~~Li~~~V~~~ia~~l~~~v~~~l~g~~~~~~~~~~~~v~~~l~~~L~~il 390 (630)
.++.+.|+++++++.+++ +.+++++++|+++||+.+++.+|++.+++ . + . . ++.++.+.|.+++
T Consensus 28 ~~~~~~~~~~~~~~~~~~----~~~~~l~~~L~~~dv~~~~~~~~~~~~~~-~--------~-~-~-~~~~~~~~l~~~l 91 (306)
T 1vma_A 28 ETFFGRVVKLLKGKKLDD----ETREELEELLIQADVGVETTEYILERLEE-K--------D-G-D-ALESLKEIILEIL 91 (306)
T ss_dssp HHTHHHHHHHHTTCCCCH----HHHHHHHHHHHHTTCCHHHHHHHHHHHTT-C--------C-S-C-HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCCCCCH----HHHHHHHHHHHHCCCCHHHHHHHHHHHHh-c--------C-H-H-HHHHHHHHHHHHh
Confidence 456677777774337876 48999999999999999999999999976 1 1 1 2 6778899999999
Q ss_pred CCCcchhhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccCC
Q psy11993 391 SPKRRVDILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHP 470 (630)
Q Consensus 391 ~~~~~~~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~ 470 (630)
++... +++.. ++|++++|+|||||||||++++||+++.+.+++|+++++|+||.++.+|++.|...++.
T Consensus 92 ~~~~~------~~~~~--~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~~a~eqL~~~~~~~gl--- 160 (306)
T 1vma_A 92 NFDTK------LNVPP--EPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGA--- 160 (306)
T ss_dssp CSCCC------CCCCS--SSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHTC---
T ss_pred CCCCC------CcccC--CCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccHHHHHHHHHHHHHcCC---
Confidence 86532 22222 34599999999999999999999999999999999999999999999999998887763
Q ss_pred CcCCcchhhhHhhhccCCCCHHHHHHHHHHHhhhcCCCeeeeccccchhchHHHHHHHHhhhhhc------CCCeEEEEe
Q psy11993 471 AAKHGGREMVQLFEKGYGKDPAEIAFRAISHARDMHIDVVLIDTAGRMQDNEPLMRALAKLVKVN------QPDLLLFVG 544 (630)
Q Consensus 471 ~~~~tv~env~l~~~~~~~d~~~ia~~ai~~a~~~~~D~vlIDTaGr~~~~~~L~~aL~kl~~~~------~Pd~VLlV~ 544 (630)
.++....+.++..++.+++..+...++|++++||+|+.+....+|.+|.++..+. .|+.+++|.
T Consensus 161 ----------~~~~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~~~~~~~l~~eL~~l~~~i~~~i~~~p~~vllVl 230 (306)
T 1vma_A 161 ----------TVISHSEGADPAAVAFDAVAHALARNKDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVI 230 (306)
T ss_dssp ----------EEECCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEE
T ss_pred ----------cEEecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCchhhHHHHHHHHHHHHHHHhhccCCCCcEEEEEE
Confidence 2233334567877777777776777899999999999988888888887766543 589999999
Q ss_pred ccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcccCCcCccHHHHHHHHHHhCCcEEEEecCCCCccCCCCCHHHH
Q psy11993 545 EALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGTGQTYTDLKSLNAKAV 624 (630)
Q Consensus 545 E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK~D~~~~~~G~~ls~~~~~g~PI~fvg~Gq~v~DL~~~~~~~~ 624 (630)
+++++++++.+++.|++.+ +++|+|+||+|++ .++|.++++++.+|+||.|+|+||++.||++|+|+++
T Consensus 231 da~t~~~~l~~a~~~~~~~----------~i~gvVlTk~D~~-~~gG~~l~~~~~~~~Pi~~i~~Ge~~~dl~~f~~~~~ 299 (306)
T 1vma_A 231 DATTGQNGLVQAKIFKEAV----------NVTGIILTKLDGT-AKGGITLAIARELGIPIKFIGVGEKAEDLRPFDPEAF 299 (306)
T ss_dssp EGGGHHHHHHHHHHHHHHS----------CCCEEEEECGGGC-SCTTHHHHHHHHHCCCEEEEECSSSGGGEEECCHHHH
T ss_pred ECCCCHHHHHHHHHHHhcC----------CCCEEEEeCCCCc-cchHHHHHHHHHHCCCEEEEeCCCChhhcccCCHHHH
Confidence 9999999999988887654 6999999999997 8999999999999999999999999989999999999
Q ss_pred HHHhhC
Q psy11993 625 VNALMK 630 (630)
Q Consensus 625 v~~Ll~ 630 (630)
++.||+
T Consensus 300 ~~~ll~ 305 (306)
T 1vma_A 300 VEVLLS 305 (306)
T ss_dssp HHHHTC
T ss_pred HHHHhC
Confidence 999985
No 10
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=100.00 E-value=1.8e-37 Score=324.78 Aligned_cols=283 Identities=26% Similarity=0.420 Sum_probs=226.7
Q ss_pred chHHHHHHhhh-CCccCCccchHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCccCCccchHHHHHHHHHHHHHHH
Q psy11993 311 KGMFSLFRGLV-GSKNLTKSDMKPILEKMKDHLIAKNVAADIAVKLCDSVALKLEGKVLGTFESVANTVKSTLTDALVQI 389 (630)
Q Consensus 311 ~~~~~~~~~~~-~~~~l~~~~l~~~l~~l~~~Li~~~V~~~ia~~l~~~v~~~l~g~~~~~~~~~~~~v~~~l~~~L~~i 389 (630)
.++. .|.+++ |.+.++ +++.+++++++|+++||+.+++.+|++.+++.+.+..+. ..+.++.++.+.|+++
T Consensus 12 ~~~~-~~~~~~~~~~~~~---~~~~~~~l~~~L~~~dv~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~ 83 (302)
T 3b9q_A 12 ENLA-VIDELLLFWNLAE---TDRVLDELEEALLVSDFGPKITVRIVERLREDIMSGKLK----SGSEIKDALKESVLEM 83 (302)
T ss_dssp HHHT-HHHHHHTTCCGGG---HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTSCC----SHHHHHHHHHHHHHHH
T ss_pred HHHH-HHHHHHcCCCcCC---HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHhhcCCC----CHHHHHHHHHHHHHHH
Confidence 3444 556665 456666 678999999999999999999999999999988776443 2467888999999999
Q ss_pred cCCCcchhhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccC
Q psy11993 390 LSPKRRVDILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLH 469 (630)
Q Consensus 390 l~~~~~~~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~ 469 (630)
+++... +.+++|.+.+| ++++|+||||||||||+++||+++.+.+|+|.+.++|+||.++.+|++.|+...+.
T Consensus 84 l~~~~~---~~~l~~~~~~g--~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i-- 156 (302)
T 3b9q_A 84 LAKKNS---KTELQLGFRKP--AVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGC-- 156 (302)
T ss_dssp HCC--C---CCSCCCCSSSC--EEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTC--
T ss_pred hCCccc---ccccccccCCC--cEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCc--
Confidence 986431 23456666666 99999999999999999999999999999999999999999999999988765442
Q ss_pred CCcCCcchhhhHhhhccCC-CCHHHHHHHHHHHhhhcCCCeeeeccccchhchHHHHHHHHhhhhh------cCCCeEEE
Q psy11993 470 PAAKHGGREMVQLFEKGYG-KDPAEIAFRAISHARDMHIDVVLIDTAGRMQDNEPLMRALAKLVKV------NQPDLLLF 542 (630)
Q Consensus 470 ~~~~~tv~env~l~~~~~~-~d~~~ia~~ai~~a~~~~~D~vlIDTaGr~~~~~~L~~aL~kl~~~------~~Pd~VLl 542 (630)
.++..... .++...+.+.+.++...++|.+++|++|+.+....++.+|.+.... .+|+++++
T Consensus 157 -----------~~v~q~~~~~~~~~~v~e~l~~~~~~~~d~~lldt~gl~~~~~~~~~eLSkqr~~iaral~~~P~e~lL 225 (302)
T 3b9q_A 157 -----------EIVVAEGDKAKAATVLSKAVKRGKEEGYDVVLCDTSGRLHTNYSLMEELIACKKAVGKIVSGAPNEILL 225 (302)
T ss_dssp -----------EEECCC--CCCHHHHHHHHHHHHHHTTCSEEEECCCCCSSCCHHHHHHHHHHHHHHHTTSTTCCSEEEE
T ss_pred -----------eEEEecCCccCHHHHHHHHHHHHHHcCCcchHHhcCCCCcchhHHHHHHHHHHHHHHHhhccCCCeeEE
Confidence 11212222 3555555666665555567889999999988777777777643322 36887777
Q ss_pred EeccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcccCCcCccHHHHHHHHHHhCCcEEEEecCCCCccCCCCCHH
Q psy11993 543 VGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGTGQTYTDLKSLNAK 622 (630)
Q Consensus 543 V~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK~D~~~~~~G~~ls~~~~~g~PI~fvg~Gq~v~DL~~~~~~ 622 (630)
+.||++|+|+..++..|++.. +++++|+||+|++ .++|.++++++.++.||.|+++||++.||++|+|+
T Consensus 226 vLDptsglD~~~~~~~~~~~~----------g~t~iiiThlD~~-~~~g~~l~~~~~~~~pi~~i~~Ge~~~dl~~f~~~ 294 (302)
T 3b9q_A 226 VLDGNTGLNMLPQAREFNEVV----------GITGLILTKLDGS-ARGGCVVSVVEELGIPVKFIGVGEAVEDLQPFDPE 294 (302)
T ss_dssp EEEGGGGGGGHHHHHHHHHHT----------CCCEEEEECCSSC-SCTHHHHHHHHHHCCCEEEEECSSSGGGEEECCHH
T ss_pred EEeCCCCcCHHHHHHHHHHhc----------CCCEEEEeCCCCC-CccChheehHHHHCCCEEEEeCCCChhhcccCCHH
Confidence 667999999999988876554 6899999999997 89999999999999999999999998899999999
Q ss_pred HHHHHhhC
Q psy11993 623 AVVNALMK 630 (630)
Q Consensus 623 ~~v~~Ll~ 630 (630)
+++++||+
T Consensus 295 ~~~~~llg 302 (302)
T 3b9q_A 295 AFVNAIFS 302 (302)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHhC
Confidence 99999985
No 11
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=100.00 E-value=2.4e-37 Score=330.73 Aligned_cols=273 Identities=27% Similarity=0.427 Sum_probs=223.7
Q ss_pred CCccCCccchHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCccCCccchHHHHHHHHHHHHHHHcCCCcchhhhhh
Q psy11993 322 GSKNLTKSDMKPILEKMKDHLIAKNVAADIAVKLCDSVALKLEGKVLGTFESVANTVKSTLTDALVQILSPKRRVDILRD 401 (630)
Q Consensus 322 ~~~~l~~~~l~~~l~~l~~~Li~~~V~~~ia~~l~~~v~~~l~g~~~~~~~~~~~~v~~~l~~~L~~il~~~~~~~iL~~ 401 (630)
|.+.+ ++++.+++++++|+++||+.+++.+|++.+++.+.+..+. ..+.++.++.+.|.+++++... ..+
T Consensus 80 ~~~~~---~~~~~~~~l~~~Ll~adv~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~l~~~l~~~~~---~~~ 149 (359)
T 2og2_A 80 FWNLA---ETDRVLDELEEALLVSDFGPKITVRIVERLREDIMSGKLK----SGSEIKDALKESVLEMLAKKNS---KTE 149 (359)
T ss_dssp TCCGG---GHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTSCC----SHHHHHHHHHHHHHHHHCCC------CS
T ss_pred CCCcC---CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHhhcCCC----CHHHHHHHHHHHHHHHhCCccc---CCC
Confidence 44444 4788999999999999999999999999999988776443 3467888999999999986531 123
Q ss_pred hhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccCCCcCCcchhhhH
Q psy11993 402 ALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHPAAKHGGREMVQ 481 (630)
Q Consensus 402 i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~~~~~tv~env~ 481 (630)
++|.+.+| ++++||||||||||||+++||+++.+.+|+|.+.++|+||.++.+|++.|+.+.+. .
T Consensus 150 l~l~~~~g--~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i-------------~ 214 (359)
T 2og2_A 150 LQLGFRKP--AVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGC-------------E 214 (359)
T ss_dssp CCCCSSSS--EEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTC-------------E
T ss_pred cceecCCC--eEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCe-------------E
Confidence 56666666 99999999999999999999999999999999999999999999999988755442 2
Q ss_pred hhhccCC-CCHHHHHHHHHHHhhhcCCCeeeeccccchhchHHHHHHHHhhhhh------cCCCeEEEEeccccCccHHH
Q psy11993 482 LFEKGYG-KDPAEIAFRAISHARDMHIDVVLIDTAGRMQDNEPLMRALAKLVKV------NQPDLLLFVGEALVGNEAVD 554 (630)
Q Consensus 482 l~~~~~~-~d~~~ia~~ai~~a~~~~~D~vlIDTaGr~~~~~~L~~aL~kl~~~------~~Pd~VLlV~E~~~g~Dav~ 554 (630)
++..... .++...+.+++.++...++|.+++||+|+.+....++.+|.+.... .+|++++++.||++|+|+..
T Consensus 215 ~v~q~~~~~~p~~tv~e~l~~~~~~~~d~~lldt~Gl~~~~~~~~~eLSkqr~~iaral~~~P~e~lLvLDpttglD~~~ 294 (359)
T 2og2_A 215 IVVAEGDKAKAATVLSKAVKRGKEEGYDVVLCDTSGRLHTNYSLMEELIACKKAVGKIVSGAPNEILLVLDGNTGLNMLP 294 (359)
T ss_dssp EECCSSSSCCHHHHHHHHHHHHHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSTTCCSEEEEEEEGGGGGGGHH
T ss_pred EEEecccccChhhhHHHHHHHHHhCCCHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHHhcCCCceEEEEcCCCCCCHHH
Confidence 2222233 4566566666666555578899999999998877777777644322 46887777777999999999
Q ss_pred HHHHHHHHHhhcccCCCCCCeeEEEEcccCCcCccHHHHHHHHHHhCCcEEEEecCCCCccCCCCCHHHHHHHhhC
Q psy11993 555 QLVKFNNAMADHSLSDNPHLIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGTGQTYTDLKSLNAKAVVNALMK 630 (630)
Q Consensus 555 ql~~f~~~l~~~~~~~~~~~i~gIIlTK~D~~~~~~G~~ls~~~~~g~PI~fvg~Gq~v~DL~~~~~~~~v~~Ll~ 630 (630)
++..|++.. ++++||+||+|++ .++|.++++++.++.||.|+|+||++.||++|+|+++++.||+
T Consensus 295 ~~~~~~~~~----------g~t~iiiThlD~~-~~gG~~lsi~~~~~~pI~~ig~Ge~~~Dl~~f~~~~~~~~ll~ 359 (359)
T 2og2_A 295 QAREFNEVV----------GITGLILTKLDGS-ARGGCVVSVVEELGIPVKFIGVGEAVEDLQPFDPEAFVNAIFS 359 (359)
T ss_dssp HHHHHHHHT----------CCCEEEEESCTTC-SCTHHHHHHHHHHCCCEEEEECSSSGGGEEECCHHHHHHHHHC
T ss_pred HHHHHHHhc----------CCeEEEEecCccc-ccccHHHHHHHHhCCCEEEEeCCCChHhccCCCHHHHHHHHhC
Confidence 988887654 6899999999997 8999999999999999999999999999999999999999984
No 12
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=100.00 E-value=1.8e-36 Score=316.26 Aligned_cols=287 Identities=30% Similarity=0.415 Sum_probs=237.9
Q ss_pred chHHHHHHhhhCCccCCccchHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCccCCccchHHHHHHHHHHHHHHHc
Q psy11993 311 KGMFSLFRGLVGSKNLTKSDMKPILEKMKDHLIAKNVAADIAVKLCDSVALKLEGKVLGTFESVANTVKSTLTDALVQIL 390 (630)
Q Consensus 311 ~~~~~~~~~~~~~~~l~~~~l~~~l~~l~~~Li~~~V~~~ia~~l~~~v~~~l~g~~~~~~~~~~~~v~~~l~~~L~~il 390 (630)
.++.+.++++.+++.++++++.+.+++++..|+..++..+++.++++++.....|+.........+.+...+.+.|...+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~Ll~ad~~~~~~~~l~d~v~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~ 86 (295)
T 1ls1_A 7 ARLQEAIGRLRGRGRITEEDLKATLREIRRALMDADVNLEVARDFVERVREEALGKQVLESLTPAEVILATVYEALKEAL 86 (295)
T ss_dssp HHHHHHHHTTTTSCSCCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTTTTCSCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHccccccccCCcHHHHHHHHHHHHHHHH
Confidence 35678899999999999999999999999999999999999999999999887776554322334567778888888888
Q ss_pred CCCcchhhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccCC
Q psy11993 391 SPKRRVDILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHP 470 (630)
Q Consensus 391 ~~~~~~~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~ 470 (630)
++.. +++++. +| ++++|+|+||+||||++.+||+++.+.+++|+++++|++|+++.+|++.+....+
T Consensus 87 ~~~~-----~~i~~~--~~--~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~~ql~~~~~~~~---- 153 (295)
T 1ls1_A 87 GGEA-----RLPVLK--DR--NLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVG---- 153 (295)
T ss_dssp TSSC-----CCCCCC--SS--EEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHHHHHHHHHHHT----
T ss_pred CCCC-----ceeecC--CC--eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHHHHHHHhcccCC----
Confidence 6532 345655 44 8999999999999999999999999999999999999999999888887765554
Q ss_pred CcCCcchhhhHhhhccCCCCHHHHHHHHHHHhhhcCCCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCc
Q psy11993 471 AAKHGGREMVQLFEKGYGKDPAEIAFRAISHARDMHIDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGN 550 (630)
Q Consensus 471 ~~~~tv~env~l~~~~~~~d~~~ia~~ai~~a~~~~~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~ 550 (630)
+.++..+...+|.++.+.++..+...+||+|++||||+.+.+..++.++.++.....|+.+++|.++..+.
T Consensus 154 ---------l~~~~~~~~~~p~~l~~~~l~~~~~~~~D~viiDtpp~~~~d~~~~~~l~~~~~~~~~~~~~lv~~~~~~~ 224 (295)
T 1ls1_A 154 ---------VPVLEVMDGESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQ 224 (295)
T ss_dssp ---------CCEEECCTTCCHHHHHHHHHHHHHHHTCCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTH
T ss_pred ---------eEEEEcCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccccHHHHHHHHHHhhhcCCCEEEEEEeCCCcH
Confidence 23333233456777767777777656899999999999988888999998888888999999999999999
Q ss_pred cHHHHHHHHHHHHhhcccCCCCCCeeEEEEcccCCcCccHHHHHHHHHHhCCcEEEEecCCCCccCCCCCHHHHHHHhhC
Q psy11993 551 EAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGTGQTYTDLKSLNAKAVVNALMK 630 (630)
Q Consensus 551 Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK~D~~~~~~G~~ls~~~~~g~PI~fvg~Gq~v~DL~~~~~~~~v~~Ll~ 630 (630)
+.+++++.|+..+ .+.|+|+||+|+. .++|.++++++.+|+||.|+|+||+++||++|+|+++++.||+
T Consensus 225 ~~~~~~~~~~~~~----------~i~givlnk~d~~-~~~g~~~~~~~~~~~pi~~i~~g~~~~dl~~f~~~~~~~~ll~ 293 (295)
T 1ls1_A 225 EALSVARAFDEKV----------GVTGLVLTKLDGD-ARGGAALSARHVTGKPIYFAGVSEKPEGLEPFYPERLAGRILG 293 (295)
T ss_dssp HHHHHHHHHHHHT----------CCCEEEEECGGGC-SSCHHHHHHHHHHCCCEEEEC------CCEECCHHHHHHHHTT
T ss_pred HHHHHHHHHhhcC----------CCCEEEEECCCCC-ccHHHHHHHHHHHCcCEEEEeCCCCccccccCCHHHHHHHHhc
Confidence 9888888887654 5889999999997 7999999999999999999999999999999999999999984
No 13
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=100.00 E-value=4e-37 Score=322.49 Aligned_cols=283 Identities=28% Similarity=0.434 Sum_probs=214.8
Q ss_pred hHHHHHHhhhCCccCCccchHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCccCCccchHHHHHHHHHHHHHHHcC
Q psy11993 312 GMFSLFRGLVGSKNLTKSDMKPILEKMKDHLIAKNVAADIAVKLCDSVALKLEGKVLGTFESVANTVKSTLTDALVQILS 391 (630)
Q Consensus 312 ~~~~~~~~~~~~~~l~~~~l~~~l~~l~~~Li~~~V~~~ia~~l~~~v~~~l~g~~~~~~~~~~~~v~~~l~~~L~~il~ 391 (630)
++...++++.++-.+++ ++++.+++++++|+++||+.+++.+|++.+++... +.++.++.+.|.++++
T Consensus 10 ~l~~~~~~~~~~~~~~~-~~~~~~~~l~~~L~~~dv~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~l~~~l~ 77 (304)
T 1rj9_A 10 GLAKTRERLLKAIPWGG-NLEEVLEELEMALLAADVGLSATEEILQEVRASGR-----------KDLKEAVKEKLVGMLE 77 (304)
T ss_dssp ------------------CHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTCC-----------SSTTHHHHHHHTTTTC
T ss_pred HHHHHHHHhhcccccch-hhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHhC
Confidence 44455566666555777 78999999999999999999999999999987643 2455678888999998
Q ss_pred CCcchhhhhhhhhhh-----ccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhc
Q psy11993 392 PKRRVDILRDALEAK-----KQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLC 466 (630)
Q Consensus 392 ~~~~~~iL~~i~~~i-----~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~ 466 (630)
+....+.+..+.+.- ..+++++++|+|||||||||++++||+++.+.+|+|.+.++|+||.++.+|++.+....+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~ 157 (304)
T 1rj9_A 78 PDERRATLRKLGFNPQKPKPVEPKGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLS 157 (304)
T ss_dssp TTCHHHHHHHTTCCCCCCCCCCCSSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHT
T ss_pred cccccccccccccccccccccCCCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcC
Confidence 653211000112110 123468999999999999999999999999999999999999999998899988865544
Q ss_pred ccCCCcCCcchhhhHhhhccCCCCHHHHHHHHHHHhhhcCCCeeeeccccchhchHHHHHHHHhhhhh------cCCCeE
Q psy11993 467 SLHPAAKHGGREMVQLFEKGYGKDPAEIAFRAISHARDMHIDVVLIDTAGRMQDNEPLMRALAKLVKV------NQPDLL 540 (630)
Q Consensus 467 ~~~~~~~~tv~env~l~~~~~~~d~~~ia~~ai~~a~~~~~D~vlIDTaGr~~~~~~L~~aL~kl~~~------~~Pd~V 540 (630)
. .++...++.++...+.+.+..+...++|++++||+|+.+....++.+|.+.... ..|+++
T Consensus 158 i-------------~~v~q~~~~~p~~~v~~~v~~~~~~~~d~~llDt~G~~~~~~~~~~eLs~~r~~iaRal~~~P~~~ 224 (304)
T 1rj9_A 158 I-------------PVIQGPEGTDSAALAYDAVQAMKARGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEV 224 (304)
T ss_dssp C-------------CEECCCTTCCHHHHHHHHHHHHHHHTCSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEE
T ss_pred c-------------eEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEecCCCCCCchHHHHHHHHHHHHHHHHhhcCCCCeE
Confidence 2 122222344565556666665555678999999999998888888777654322 469989
Q ss_pred EEEeccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcccCCcCccHHHHHHHHHHhCCcEEEEecCCCCccCCCCC
Q psy11993 541 LFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGTGQTYTDLKSLN 620 (630)
Q Consensus 541 LlV~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK~D~~~~~~G~~ls~~~~~g~PI~fvg~Gq~v~DL~~~~ 620 (630)
+++.|++++++.++++..|++.. +++++|+||.|++ .++|.++++.+.++.||.|+|+||++.||++|+
T Consensus 225 lLvLDa~t~~~~~~~~~~~~~~~----------~~t~iivTh~d~~-a~gg~~l~i~~~~~~pi~~ig~Ge~~~dl~~f~ 293 (304)
T 1rj9_A 225 WLVLDAVTGQNGLEQAKKFHEAV----------GLTGVIVTKLDGT-AKGGVLIPIVRTLKVPIKFVGVGEGPDDLQPFD 293 (304)
T ss_dssp EEEEETTBCTHHHHHHHHHHHHH----------CCSEEEEECTTSS-CCCTTHHHHHHHHCCCEEEEECSSSTTCEEECC
T ss_pred EEEEcHHHHHHHHHHHHHHHHHc----------CCcEEEEECCccc-ccccHHHHHHHHHCCCeEEEeCCCChhhcccCC
Confidence 99999999999999999888765 6899999999997 899999999999999999999999988999999
Q ss_pred HHHHHHHhhC
Q psy11993 621 AKAVVNALMK 630 (630)
Q Consensus 621 ~~~~v~~Ll~ 630 (630)
|+++++.||+
T Consensus 294 ~~~~~~~ll~ 303 (304)
T 1rj9_A 294 PEAFVEALLE 303 (304)
T ss_dssp HHHHHHHHTC
T ss_pred HHHHHHHHhC
Confidence 9999999985
No 14
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=100.00 E-value=6.2e-36 Score=327.47 Aligned_cols=289 Identities=27% Similarity=0.455 Sum_probs=249.0
Q ss_pred chHHHHHHhhhCCccCCccchHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCccCCccchHHHHHHHHHHHHHHHc
Q psy11993 311 KGMFSLFRGLVGSKNLTKSDMKPILEKMKDHLIAKNVAADIAVKLCDSVALKLEGKVLGTFESVANTVKSTLTDALVQIL 390 (630)
Q Consensus 311 ~~~~~~~~~~~~~~~l~~~~l~~~l~~l~~~Li~~~V~~~ia~~l~~~v~~~l~g~~~~~~~~~~~~v~~~l~~~L~~il 390 (630)
.++.+.|+++.|++.||++++.+.+++++.+|+++||+.+++.+|++.+++...|..+.......+.+..++.+.|++++
T Consensus 7 ~~l~~~~~~~~~~~~~~e~~~~~~l~e~~~~Ll~adv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 86 (433)
T 2xxa_A 7 DRLSRTLRNISGRGRLTEDNVKDTLREVRMALLEADVALPVVREFINRVKEKAVGHEVNKSLTPGQEFVKIVRNELVAAM 86 (433)
T ss_dssp HHHHHHHHHSCCCSCCCHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHSSSCCCSSSCTTTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcccccccCChHHHHHHHHHHHHHHHh
Confidence 46778999999999999999999999999999999999999999999999998887655444455677788999999999
Q ss_pred CCCcchhhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhc-CCeEEEeecccCCccHHHHHHHHHhhhcccC
Q psy11993 391 SPKRRVDILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIEN-NLNVLIAACDTFRAGAVEQLRTHVRHLCSLH 469 (630)
Q Consensus 391 ~~~~~~~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~-ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~ 469 (630)
++... . +. ...++|.+|+|+|++||||||++.+||.++... +.+|+++++|+||+++.+|++.+....+
T Consensus 87 ~~~~~-~----~~--~~~~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~--- 156 (433)
T 2xxa_A 87 GEENQ-T----LN--LAAQPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVG--- 156 (433)
T ss_dssp CSSSC-C----CC--CCSSSSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHT---
T ss_pred ccccc-c----cc--ccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCC---
Confidence 86431 1 11 234567999999999999999999999999988 9999999999999999999988776655
Q ss_pred CCcCCcchhhhHhhhccCCCCHHHHHHHHHHHhhhcCCCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccC
Q psy11993 470 PAAKHGGREMVQLFEKGYGKDPAEIAFRAISHARDMHIDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVG 549 (630)
Q Consensus 470 ~~~~~tv~env~l~~~~~~~d~~~ia~~ai~~a~~~~~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g 549 (630)
+.++..+.+.++..++.+++..+...+||+++|||||+.+.+..++.+|.++..+..|+.+++|.+++.|
T Consensus 157 ----------l~v~~~~~~~dp~~i~~~~l~~~~~~~~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g 226 (433)
T 2xxa_A 157 ----------VDFFPSDVGQKPVDIVNAALKEAKLKFYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTG 226 (433)
T ss_dssp ----------CEECCCCSSSCHHHHHHHHHHHHHHTTCSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBC
T ss_pred ----------eeEEeCCCCCCHHHHHHHHHHHHHhCCCCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchh
Confidence 3344444446788877788887776789999999999999888899999888778899999999999999
Q ss_pred ccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcccCCcCccHHHHHHHHHHhCCcEEEEecCCCCccCCCCCHHHHHHHhh
Q psy11993 550 NEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGTGQTYTDLKSLNAKAVVNALM 629 (630)
Q Consensus 550 ~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK~D~~~~~~G~~ls~~~~~g~PI~fvg~Gq~v~DL~~~~~~~~v~~Ll 629 (630)
++++.++..|+..+ .+.|+|+||+|.. .++|.++++.+.++.||.|+|+||.+.||..|+|+++++.|+
T Consensus 227 ~~~~~~~~~f~~~l----------~i~gvVlnK~D~~-~~~g~~l~i~~~~~~Pi~~iG~ge~v~dl~~f~p~~~a~~l~ 295 (433)
T 2xxa_A 227 QDAANTAKAFNEAL----------PLTGVVLTKVDGD-ARGGAALSIRHITGKPIKFLGVGEKTEALEPFHPDRIASRIL 295 (433)
T ss_dssp TTHHHHHHHHHHHS----------CCCCEEEECTTSS-SCCTHHHHHHHHHCCCEEEEECSSSSSCEEECCHHHHHHHHH
T ss_pred HHHHHHHHHHhccC----------CCeEEEEecCCCC-ccHHHHHHHHHHHCCCeEEEecCCCchhhhhcChHHHHHHHh
Confidence 99999888887654 5789999999996 788999999999999999999999999999999999999876
Q ss_pred C
Q psy11993 630 K 630 (630)
Q Consensus 630 ~ 630 (630)
+
T Consensus 296 g 296 (433)
T 2xxa_A 296 G 296 (433)
T ss_dssp C
T ss_pred C
Confidence 3
No 15
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=100.00 E-value=7.7e-34 Score=310.77 Aligned_cols=286 Identities=23% Similarity=0.395 Sum_probs=236.3
Q ss_pred chHHHHHHhhhCCccCCccchHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCc-cCCccchHHHHHHHHHHHHHHH
Q psy11993 311 KGMFSLFRGLVGSKNLTKSDMKPILEKMKDHLIAKNVAADIAVKLCDSVALKLEGKV-LGTFESVANTVKSTLTDALVQI 389 (630)
Q Consensus 311 ~~~~~~~~~~~~~~~l~~~~l~~~l~~l~~~Li~~~V~~~ia~~l~~~v~~~l~g~~-~~~~~~~~~~v~~~l~~~L~~i 389 (630)
.++.+.|+++.|++.|+++++++.+++++.+|++++|+..++.++++.++....+.+ +..++ ....+..++.+.|.++
T Consensus 6 ~~~~~~~~~~~~~~~~~e~~~~~~~~e~~~~Ll~adv~~~~~~~~~~~vk~~~~~~~~~~~~~-~~~~~~~~~~~~l~~l 84 (432)
T 2v3c_C 6 ENLNKALNKLKAAAFVDKKLIKEVIKDIQRALIQADVNVKLVLKMSKEIERRALEEKTPKGLS-KKEHIIKIVYEELVKL 84 (432)
T ss_dssp HHHHHHHHHCCSSSCCCSSTTHHHHHHHHHHHHHTCCCHHHHHHHTHHHHHHHSSSCSSCSSC-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhccccccccCC-hHHHHHHHHHHHHHHH
Confidence 356789999999999999999999999999999999999999999999998876653 33444 3455778899999999
Q ss_pred cCCCcchhhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccC
Q psy11993 390 LSPKRRVDILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLH 469 (630)
Q Consensus 390 l~~~~~~~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~ 469 (630)
+++.... +.+..++|.+|+|+|++||||||++.+||+++...+.+|+++++|+||+++.+||+.++...+.
T Consensus 85 l~~~~~~-------~~~~~~~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~~~~~~~gv-- 155 (432)
T 2v3c_C 85 LGEEAKK-------LELNPKKQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHV-- 155 (432)
T ss_dssp HCCSCCC-------CCCCSSSCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSHHHHHHSSC--
T ss_pred hCCCCcC-------ccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHHHhhhccCc--
Confidence 9864211 1223456789999999999999999999999998899999999999999999999988766553
Q ss_pred CCcCCcchhhhHhhhcc-CCCCHHHHHHHHHHHhhhcCCCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEecccc
Q psy11993 470 PAAKHGGREMVQLFEKG-YGKDPAEIAFRAISHARDMHIDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALV 548 (630)
Q Consensus 470 ~~~~~tv~env~l~~~~-~~~d~~~ia~~ai~~a~~~~~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~ 548 (630)
+++... .+.++..++.+++..+ .++|+++|||+|+.+.+..++.+|..+.....|+.+++|.+++.
T Consensus 156 -----------~v~~~~~~~~dp~~i~~~~l~~~--~~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~ 222 (432)
T 2v3c_C 156 -----------PIYGDETRTKSPVDIVKEGMEKF--KKADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTI 222 (432)
T ss_dssp -----------CEECCSSSCCSSSTTHHHHHHTT--SSCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGG
T ss_pred -----------ceEecCCCCCCHHHHHHHHHHHh--hCCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccc
Confidence 222221 2334444445566554 67999999999999988889999887777778999999999999
Q ss_pred CccHHHHHHHHHHHHhhcccCCCCC-CeeEEEEcccCCcCccHHHHHHHHHHhCCcEEEEecCCCCccCCCCCHHHHHHH
Q psy11993 549 GNEAVDQLVKFNNAMADHSLSDNPH-LIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGTGQTYTDLKSLNAKAVVNA 627 (630)
Q Consensus 549 g~Dav~ql~~f~~~l~~~~~~~~~~-~i~gIIlTK~D~~~~~~G~~ls~~~~~g~PI~fvg~Gq~v~DL~~~~~~~~v~~ 627 (630)
|++++.++..|+. .. +++++|+||+|.. .+.|.++++.+.+|.||.|+|+||++.||..|+|..++++
T Consensus 223 g~~~~~~~~~~~~----------~~~~i~gvVlnK~D~~-~~~g~~l~~~~~~~~pi~~ig~Ge~~~dl~~f~~~~~~s~ 291 (432)
T 2v3c_C 223 GQQAGIQAKAFKE----------AVGEIGSIIVTKLDGS-AKGGGALSAVAETKAPIKFIGIGEGIDDLEPFDPKKFISR 291 (432)
T ss_dssp GGGHHHHHHHHHT----------TSCSCEEEEEECSSSC-STTHHHHHHHHHSSCCEEEECCSSSSSSCCBCCHHHHHHH
T ss_pred cHHHHHHHHHHhh----------cccCCeEEEEeCCCCc-cchHHHHHHHHHHCCCEEEeecCccccccccCCHHHHHHH
Confidence 9988887766652 13 5789999999996 7889999999999999999999999999999999999998
Q ss_pred hhC
Q psy11993 628 LMK 630 (630)
Q Consensus 628 Ll~ 630 (630)
+++
T Consensus 292 l~g 294 (432)
T 2v3c_C 292 LLG 294 (432)
T ss_dssp HTC
T ss_pred HcC
Confidence 864
No 16
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=100.00 E-value=1.2e-33 Score=314.13 Aligned_cols=287 Identities=22% Similarity=0.436 Sum_probs=242.1
Q ss_pred hHHHHHHhhhCCccCCccchHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCccCCccchHHHHHHHHHHHHHHHcC
Q psy11993 312 GMFSLFRGLVGSKNLTKSDMKPILEKMKDHLIAKNVAADIAVKLCDSVALKLEGKVLGTFESVANTVKSTLTDALVQILS 391 (630)
Q Consensus 312 ~~~~~~~~~~~~~~l~~~~l~~~l~~l~~~Li~~~V~~~ia~~l~~~v~~~l~g~~~~~~~~~~~~v~~~l~~~L~~il~ 391 (630)
++.+.|+++.|.+.|+++++++++++++.+|++++|+.+++.++++.|+....+..+.......+.+..++.++|+++++
T Consensus 9 ~l~~~~~~l~~~~~~~e~~~~~~l~el~~~Ll~adv~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~eL~~ll~ 88 (504)
T 2j37_W 9 KITSALRSLSNATIINEEVLNAMLKEVCTALLEADVNIKLVKQLRENVKSAIDLEEMASGLNKRKMIQHAVFKELVKLVD 88 (504)
T ss_dssp TTTTTTTCCCSCSSCCHHHHHHHHHHHHHHHCCTTTSSSTTHHHHHHHHHHHTTCCCCSSSCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcCcccccCChHHHHHHHHHHHHHHHhc
Confidence 45567888999899999999999999999999999999999999999998887765544445566788899999999998
Q ss_pred CCcchhhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccCCC
Q psy11993 392 PKRRVDILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHPA 471 (630)
Q Consensus 392 ~~~~~~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~~ 471 (630)
+.... +....++|.+|+|+|++||||||++.+||.++...+.+|+++++|+||+++.+||+.+....+
T Consensus 89 ~~~~~-------~~~~~~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~----- 156 (504)
T 2j37_W 89 PGVKA-------WTPTKGKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKAR----- 156 (504)
T ss_dssp CCCCC-------CCCCSS--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHT-----
T ss_pred cccch-------hccccCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccC-----
Confidence 64321 112234578999999999999999999999999888999999999999999999998877655
Q ss_pred cCCcchhhhHhhhccCCCCHHHHHHHHHHHhhhcCCCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCcc
Q psy11993 472 AKHGGREMVQLFEKGYGKDPAEIAFRAISHARDMHIDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNE 551 (630)
Q Consensus 472 ~~~tv~env~l~~~~~~~d~~~ia~~ai~~a~~~~~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~D 551 (630)
++++....+.++.+++.+++..+...++|+++|||||+.+.+..++.++.++.....|+.+++|.+++.|.+
T Consensus 157 --------i~v~~~~~~~dp~~i~~~al~~~~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~ 228 (504)
T 2j37_W 157 --------IPFYGSYTEMDPVIIASEGVEKFKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQA 228 (504)
T ss_dssp --------CCEEECCCCSCHHHHHHHHHHHHHHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTT
T ss_pred --------ceEEccCCCCCHHHHHHHHHHHHHHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEecccccc
Confidence 233333345678787777887776678999999999999887788888877766668999999999999999
Q ss_pred HHHHHHHHHHHHhhcccCCCCCCeeEEEEcccCCcCccHHHHHHHHHHhCCcEEEEecCCCCccCCCCCHHHHHHHhh
Q psy11993 552 AVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGTGQTYTDLKSLNAKAVVNALM 629 (630)
Q Consensus 552 av~ql~~f~~~l~~~~~~~~~~~i~gIIlTK~D~~~~~~G~~ls~~~~~g~PI~fvg~Gq~v~DL~~~~~~~~v~~Ll 629 (630)
++.++..|++.+ +++++|+||+|.. .+.|.++++.+.+|.||.|+|+||++.||..|++..++++++
T Consensus 229 ~~~~a~~~~~~~----------~i~gvVlNK~D~~-~~~g~~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~ 295 (504)
T 2j37_W 229 CEAQAKAFKDKV----------DVASVIVTKLDGH-AKGGGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLL 295 (504)
T ss_dssp HHHHHHHHHHHH----------CCCCEEEECTTSC-CCCTHHHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCC
T ss_pred HHHHHHHHHhhc----------CceEEEEeCCccc-cchHHHHHHHHHhCCCeEEeccccchhhhhccCcceeeehhc
Confidence 888888877654 5789999999997 789999999999999999999999999999999999998765
No 17
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=99.98 E-value=1.7e-31 Score=278.73 Aligned_cols=260 Identities=20% Similarity=0.252 Sum_probs=201.1
Q ss_pred CccchHHHHHHHHHHHHHcCCCHHHHHHHHHHH-HHHhcCCccCCccchHHHHHHHHHHHHHHHcCCCcchhhhhhhhhh
Q psy11993 327 TKSDMKPILEKMKDHLIAKNVAADIAVKLCDSV-ALKLEGKVLGTFESVANTVKSTLTDALVQILSPKRRVDILRDALEA 405 (630)
Q Consensus 327 ~~~~l~~~l~~l~~~Li~~~V~~~ia~~l~~~v-~~~l~g~~~~~~~~~~~~v~~~l~~~L~~il~~~~~~~iL~~i~~~ 405 (630)
...++++.+++++++|+++||+.+++.+|++.+ +..+.+. .++ .+.+..++.+.|.+++++.... .+
T Consensus 34 ~~~~~~~~~~~l~~~L~~~dv~~~~~~~~~~~~~~~~~~~~---~~~--~~~~~~~~~~~l~~~l~~~~~~------~~- 101 (296)
T 2px0_A 34 YQSVLPEPLRKAEKLLQETGIKESTKTNTLKKLLRFSVEAG---GLT--EENVVGKLQEILCDMLPSADKW------QE- 101 (296)
T ss_dssp -----CCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHSSS---CCC--TTTHHHHHHHHHHTTSCCGGGS------CC-
T ss_pred cccccHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHhhccc---CCC--HHHHHHHHHHHHHHHhCCcccc------cc-
Confidence 344677899999999999999999999999999 5666543 222 2457778888999998754321 11
Q ss_pred hccCCCeEEEEEccCCCChHHHHHHHHHHHHh-cCCeEEEeecccCCccHHHHHHHHHhhhcccCCCcCCcchhhhHhhh
Q psy11993 406 KKQGRPFVMAFCGVNGVGKSTNLAKICFWLIE-NNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHPAAKHGGREMVQLFE 484 (630)
Q Consensus 406 i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~-~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~~~~~tv~env~l~~ 484 (630)
..++++++|+|||||||||++++||+++.+ .|.+|+++++|+||.++.+|++.++...+.... .
T Consensus 102 --~~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~-------------~ 166 (296)
T 2px0_A 102 --PIHSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRIAAVEQLKTYAELLQAPLE-------------V 166 (296)
T ss_dssp --CCCSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSSTTHHHHHHHHHTTTTCCCC-------------B
T ss_pred --cCCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcccchHHHHHHHHHHhcCCCeE-------------e
Confidence 123489999999999999999999999987 566999999999999999999998877663211 0
Q ss_pred ccCCCCHHHHHHHHHHHhhhcCCCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCccHHHHHHHHHHHHh
Q psy11993 485 KGYGKDPAEIAFRAISHARDMHIDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQLVKFNNAMA 564 (630)
Q Consensus 485 ~~~~~d~~~ia~~ai~~a~~~~~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~Dav~ql~~f~~~l~ 564 (630)
..++.. ...++..+ .++|++++||+|+.+.+..++.+|.+++....|+.+++|.+++.+.+.+.++ ..
T Consensus 167 ---~~~~~~-l~~al~~~--~~~dlvIiDT~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~~~~~~~~------~~ 234 (296)
T 2px0_A 167 ---CYTKEE-FQQAKELF--SEYDHVFVDTAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAKYEDMKHI------VK 234 (296)
T ss_dssp ---CSSHHH-HHHHHHHG--GGSSEEEEECCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBCHHHHHHH------TT
T ss_pred ---cCCHHH-HHHHHHHh--cCCCEEEEeCCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCCHHHHHHH------HH
Confidence 012322 23445433 5789999999999998888888888776655688888898888775443332 22
Q ss_pred hcccCCCCCCeeEEEEcccCCcCccHHHHHHHHHHhCCcEEEEecCCCCc-cCCCCCHHHHHHHhhC
Q psy11993 565 DHSLSDNPHLIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGTGQTYT-DLKSLNAKAVVNALMK 630 (630)
Q Consensus 565 ~~~~~~~~~~i~gIIlTK~D~~~~~~G~~ls~~~~~g~PI~fvg~Gq~v~-DL~~~~~~~~v~~Ll~ 630 (630)
.+ ....+.++|+||+|++ .++|.++++++.+|.||.|+++||+|| ||+.|+++++++.||+
T Consensus 235 ~~----~~l~~~giVltk~D~~-~~~g~~~~~~~~~~~pi~~i~~ge~vp~dl~~f~~~~~~~~llg 296 (296)
T 2px0_A 235 RF----SSVPVNQYIFTKIDET-TSLGSVFNILAESKIGVGFMTNGQNVPEDIQTVSPLGFVRMLCR 296 (296)
T ss_dssp TT----SSSCCCEEEEECTTTC-SCCHHHHHHHHTCSCCCSEECCSSCTTTSCBCCCHHHHHHHHTC
T ss_pred HH----hcCCCCEEEEeCCCcc-cchhHHHHHHHHHCcCEEEEECCCCChHHHhcCCHHHHHHHHcC
Confidence 12 2346889999999997 799999999999999999999999996 9999999999999985
No 18
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=99.76 E-value=9.1e-19 Score=176.62 Aligned_cols=195 Identities=18% Similarity=0.146 Sum_probs=136.7
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHH--H-HHHHhhhcccCC-Cc
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQ--L-RTHVRHLCSLHP-AA 472 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQ--L-r~~~~~l~~~~~-~~ 472 (630)
.+|++|+|.+.+| ++++|+|||||||||+++.|++++.|..|+|.+.+.|.......+. + +....++.+.+. ++
T Consensus 19 ~~L~~isl~i~~G--e~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~ 96 (235)
T 3tif_A 19 YALKNVNLNIKEG--EFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIP 96 (235)
T ss_dssp EEEEEEEEEECTT--CEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHHHHHEEEECTTCCCCT
T ss_pred eeEEeeeEEEcCC--CEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHhhccEEEEecCCccCC
Confidence 5899999999999 9999999999999999999999999999999999988755443322 1 233455555433 56
Q ss_pred CCcchhhhHhhhccC---CCCHHHHHHHHHHHhhhcCC-----CeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEe
Q psy11993 473 KHGGREMVQLFEKGY---GKDPAEIAFRAISHARDMHI-----DVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVG 544 (630)
Q Consensus 473 ~~tv~env~l~~~~~---~~d~~~ia~~ai~~a~~~~~-----D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~ 544 (630)
.+|+.+|+.+..... .....+...++.+.+...++ +..+-..|||++++..++++|. .+| .+|++|
T Consensus 97 ~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv~iAral~-----~~p-~llllD 170 (235)
T 3tif_A 97 LLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALA-----NNP-PIILAD 170 (235)
T ss_dssp TSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHHHT-----TCC-SEEEEE
T ss_pred CCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHHHHHHHHHHHH-----cCC-CEEEEe
Confidence 689999998753221 22333333333333333332 4456788999999999999999 888 567799
Q ss_pred ccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcccCCcCccHHHHHHHHHHhCCcEEEEecCCCCc
Q psy11993 545 EALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGTGQTYT 614 (630)
Q Consensus 545 E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK~D~~~~~~G~~ls~~~~~g~PI~fvg~Gq~v~ 614 (630)
||++|+|...+.. +.+.+.++.. ..+.+.|++|+ | .. + + ...-.|.++..|+-+.
T Consensus 171 EPts~LD~~~~~~-i~~~l~~l~~---~~g~tvi~vtH-d-----~~-~---~-~~~d~i~~l~~G~i~~ 225 (235)
T 3tif_A 171 QPTWALDSKTGEK-IMQLLKKLNE---EDGKTVVVVTH-D-----IN-V---A-RFGERIIYLKDGEVER 225 (235)
T ss_dssp STTTTSCHHHHHH-HHHHHHHHHH---HHCCEEEEECS-C-----HH-H---H-TTSSEEEEEETTEEEE
T ss_pred CCcccCCHHHHHH-HHHHHHHHHH---HcCCEEEEEcC-C-----HH-H---H-HhCCEEEEEECCEEEE
Confidence 9999999887644 3445555432 12578889997 1 21 1 1 2334688888887654
No 19
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=99.76 E-value=7.3e-19 Score=181.49 Aligned_cols=174 Identities=18% Similarity=0.085 Sum_probs=128.0
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCc-cHHHHHHHHHhhhcccC--CCcC
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRA-GAVEQLRTHVRHLCSLH--PAAK 473 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~-ga~eQLr~~~~~l~~~~--~~~~ 473 (630)
.+|++|+|.+.+| ++++|+|||||||||+++.|++++.+..|+|.+.+.|+... .....++....++.+.+ .++.
T Consensus 22 ~~L~~isl~i~~G--e~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~ig~v~Q~~~~~~~~ 99 (275)
T 3gfo_A 22 HALKGINMNIKRG--EVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLFS 99 (275)
T ss_dssp EEEEEEEEEEETT--SEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHHHSEEEECSSGGGTCCS
T ss_pred eEEEeeEEEEcCC--CEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHHhCcEEEEEcCccccccc
Confidence 4899999999999 99999999999999999999999999999999999887421 12234455555565543 2446
Q ss_pred CcchhhhHhhhccCCCCHHHH---HHHHHHHhhhcC-CCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccC
Q psy11993 474 HGGREMVQLFEKGYGKDPAEI---AFRAISHARDMH-IDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVG 549 (630)
Q Consensus 474 ~tv~env~l~~~~~~~d~~~i---a~~ai~~a~~~~-~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g 549 (630)
+|+.+|+.+....++....+. +.++++.+.... .+..+-..|||++++..++++|+ .+| .+|++|||++|
T Consensus 100 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~iAraL~-----~~P-~lLlLDEPts~ 173 (275)
T 3gfo_A 100 ASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLV-----MEP-KVLILDEPTAG 173 (275)
T ss_dssp SBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHT-----TCC-SEEEEECTTTT
T ss_pred CcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHH-----cCC-CEEEEECcccc
Confidence 899999988765555554443 333444333322 24456788999999999999999 888 56669999999
Q ss_pred ccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 550 NEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 550 ~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
+|...+.. +.+.+.++.. ..+.+.|++|+
T Consensus 174 LD~~~~~~-i~~~l~~l~~---~~g~tvi~vtH 202 (275)
T 3gfo_A 174 LDPMGVSE-IMKLLVEMQK---ELGITIIIATH 202 (275)
T ss_dssp CCHHHHHH-HHHHHHHHHH---HHCCEEEEEES
T ss_pred CCHHHHHH-HHHHHHHHHh---hCCCEEEEEec
Confidence 99887643 4445555531 01577888888
No 20
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=99.75 E-value=1.4e-18 Score=185.75 Aligned_cols=196 Identities=14% Similarity=0.121 Sum_probs=140.4
Q ss_pred hhhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHH--HHHHHHhhhcccCC-Cc
Q psy11993 396 VDILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVE--QLRTHVRHLCSLHP-AA 472 (630)
Q Consensus 396 ~~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~e--QLr~~~~~l~~~~~-~~ 472 (630)
..+|++|+|.+.+| ++++|+|||||||||++++|++++.|+.|+|.+.+.|+......+ .+|....++.+.+. ++
T Consensus 41 ~~aL~~vsl~i~~G--ei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~~~~r~~Ig~v~Q~~~l~~ 118 (366)
T 3tui_C 41 IQALNNVSLHVPAG--QIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLS 118 (366)
T ss_dssp EEEEEEEEEEECTT--CEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHHHHHHTTEEEECSSCCCCT
T ss_pred eEEEEeeEEEEcCC--CEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHhCcEEEEeCCCccCC
Confidence 46899999999999 999999999999999999999999999999999999986654432 22333444444333 56
Q ss_pred CCcchhhhHhhhccCCCCHHHH---HHHHHHHhhhcC-CCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEecccc
Q psy11993 473 KHGGREMVQLFEKGYGKDPAEI---AFRAISHARDMH-IDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALV 548 (630)
Q Consensus 473 ~~tv~env~l~~~~~~~d~~~i---a~~ai~~a~~~~-~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~ 548 (630)
.+|+.+|+.+.....+....+. +.++++.+...+ .+..+-..|||++|+..++++|+ .+| .+|++|||++
T Consensus 119 ~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQRVaIArAL~-----~~P-~lLLlDEPTs 192 (366)
T 3tui_C 119 SRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALA-----SNP-KVLLCDQATS 192 (366)
T ss_dssp TSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHHHHHHHHTT-----TCC-SEEEEESTTT
T ss_pred CCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHh-----cCC-CEEEEECCCc
Confidence 7899999988765555554443 334444443322 24556788999999999999999 889 5677999999
Q ss_pred CccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcccCCcCccHHHHHHHHHHhCCcEEEEecCCCC
Q psy11993 549 GNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGTGQTY 613 (630)
Q Consensus 549 g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK~D~~~~~~G~~ls~~~~~g~PI~fvg~Gq~v 613 (630)
++|...+... .+.+.++.. ..+++.|++|+ | . +.+....-.|.++..|+-+
T Consensus 193 ~LD~~~~~~i-~~lL~~l~~---~~g~Tii~vTH-d-----l----~~~~~~aDrv~vl~~G~iv 243 (366)
T 3tui_C 193 ALDPATTRSI-LELLKDINR---RLGLTILLITH-E-----M----DVVKRICDCVAVISNGELI 243 (366)
T ss_dssp TSCHHHHHHH-HHHHHHHHH---HSCCEEEEEES-C-----H----HHHHHHCSEEEEEETTEEE
T ss_pred cCCHHHHHHH-HHHHHHHHH---hCCCEEEEEec-C-----H----HHHHHhCCEEEEEECCEEE
Confidence 9998876543 344555432 13688899997 1 2 2222333457777777654
No 21
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=99.75 E-value=1.7e-18 Score=176.78 Aligned_cols=173 Identities=18% Similarity=0.122 Sum_probs=126.3
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccCC-CcCCc
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHP-AAKHG 475 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~-~~~~t 475 (630)
.+|++++|.+.+| ++++|+|||||||||+++.|++++.|..|+|.+.+.++......+..+....++.+... ++.+|
T Consensus 21 ~vl~~vsl~i~~G--e~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~~t 98 (257)
T 1g6h_A 21 KALDGVSISVNKG--DVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKEMT 98 (257)
T ss_dssp EEEEEECCEEETT--CEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTEEECCCCCGGGGGSB
T ss_pred eeEeeeEEEEeCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEEEEccCCccCCCCc
Confidence 4899999999999 99999999999999999999999999999999999887543333344444555655433 55689
Q ss_pred chhhhHhhhcc--CC-----------CC-H--HHHHHHHHHHhhhcC-CCeeeeccccchhchHHHHHHHHhhhhhcCCC
Q psy11993 476 GREMVQLFEKG--YG-----------KD-P--AEIAFRAISHARDMH-IDVVLIDTAGRMQDNEPLMRALAKLVKVNQPD 538 (630)
Q Consensus 476 v~env~l~~~~--~~-----------~d-~--~~ia~~ai~~a~~~~-~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd 538 (630)
+.+|+.+.... ++ .. . ...+.++++.+.... .+..+-..|||++++..++++|. .+|
T Consensus 99 v~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkQrv~iAraL~-----~~p- 172 (257)
T 1g6h_A 99 VLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALM-----TNP- 172 (257)
T ss_dssp HHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHH-----TCC-
T ss_pred HHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCchhCCHHHHHHHHHHHHHH-----cCC-
Confidence 99999875432 12 11 1 122344444443322 24456788999999999999999 888
Q ss_pred eEEEEeccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 539 LLLFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 539 ~VLlV~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
.+|++|||++|+|...+.. +.+.+.++.. .+.+.|++|+
T Consensus 173 ~lllLDEPts~LD~~~~~~-l~~~l~~l~~----~g~tvi~vtH 211 (257)
T 1g6h_A 173 KMIVMDEPIAGVAPGLAHD-IFNHVLELKA----KGITFLIIEH 211 (257)
T ss_dssp SEEEEESTTTTCCHHHHHH-HHHHHHHHHH----TTCEEEEECS
T ss_pred CEEEEeCCccCCCHHHHHH-HHHHHHHHHH----CCCEEEEEec
Confidence 5677999999999877643 4455655543 1577888888
No 22
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=99.75 E-value=2e-18 Score=172.82 Aligned_cols=173 Identities=20% Similarity=0.192 Sum_probs=126.0
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHH--HHH-HHHhhhcccCC-Cc
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVE--QLR-THVRHLCSLHP-AA 472 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~e--QLr-~~~~~l~~~~~-~~ 472 (630)
.+|++++|.+.+| ++++|+|||||||||+++.|++++.|..|+|.+.+.+.......+ .++ ....++.+... ++
T Consensus 18 ~~l~~vsl~i~~G--e~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~ 95 (224)
T 2pcj_A 18 EILKGISLSVKKG--EFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLRNRKLGFVFQFHYLIP 95 (224)
T ss_dssp EEEEEEEEEEETT--CEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHHHHHEEEECSSCCCCT
T ss_pred eeEeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHHhCcEEEEecCcccCC
Confidence 4799999999999 999999999999999999999999999999999998875433221 222 34555555433 56
Q ss_pred CCcchhhhHhhhccCCCCHH---HHHHHHHHHhhhcC-CCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEecccc
Q psy11993 473 KHGGREMVQLFEKGYGKDPA---EIAFRAISHARDMH-IDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALV 548 (630)
Q Consensus 473 ~~tv~env~l~~~~~~~d~~---~ia~~ai~~a~~~~-~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~ 548 (630)
.+|+.+|+.+....++.... +.+.++++.+...+ .+..+-..|||++++..++++|. .+| .+|++|||++
T Consensus 96 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~-----~~p-~lllLDEPt~ 169 (224)
T 2pcj_A 96 ELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLSRKPYELSGGEQQRVAIARALA-----NEP-ILLFADEPTG 169 (224)
T ss_dssp TSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHTT-----TCC-SEEEEESTTT
T ss_pred CCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHH-----cCC-CEEEEeCCCC
Confidence 68999999876443333322 22344454444332 24456678999999999999999 888 5667999999
Q ss_pred CccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 549 GNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 549 g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
++|...+. .+.+.+.++... +.+.|++|+
T Consensus 170 ~LD~~~~~-~~~~~l~~l~~~----g~tvi~vtH 198 (224)
T 2pcj_A 170 NLDSANTK-RVMDIFLKINEG----GTSIVMVTH 198 (224)
T ss_dssp TCCHHHHH-HHHHHHHHHHHT----TCEEEEECS
T ss_pred CCCHHHHH-HHHHHHHHHHHC----CCEEEEEcC
Confidence 99987654 344555555421 567888887
No 23
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=99.74 E-value=2.7e-18 Score=175.94 Aligned_cols=194 Identities=18% Similarity=0.162 Sum_probs=135.0
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCC----------ccH--HHHHHHHHhh
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFR----------AGA--VEQLRTHVRH 464 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R----------~ga--~eQLr~~~~~ 464 (630)
.+|++|+|.+.+| ++++|+|||||||||+++.|++++.|..|+|.+.+.|... ... ...++....+
T Consensus 20 ~vl~~vsl~i~~G--e~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 97 (262)
T 1b0u_A 20 EVLKGVSLQARAG--DVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTM 97 (262)
T ss_dssp EEEEEEEEEECTT--CEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEESCHHHHHHHHHHEEE
T ss_pred EEEEeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEccccccccccccccChhhHHHHhcceEE
Confidence 4899999999999 9999999999999999999999999999999999887641 111 1233444555
Q ss_pred hcccCC-CcCCcchhhhHhhh-ccCCCCHHH---HHHHHHHHhhhcCC--CeeeeccccchhchHHHHHHHHhhhhhcCC
Q psy11993 465 LCSLHP-AAKHGGREMVQLFE-KGYGKDPAE---IAFRAISHARDMHI--DVVLIDTAGRMQDNEPLMRALAKLVKVNQP 537 (630)
Q Consensus 465 l~~~~~-~~~~tv~env~l~~-~~~~~d~~~---ia~~ai~~a~~~~~--D~vlIDTaGr~~~~~~L~~aL~kl~~~~~P 537 (630)
+.+... ++.+|+.+|+.+.. ..++..... .+.++++.+...++ +..+-..|||++++..++++|. .+|
T Consensus 98 v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGq~qRv~lAraL~-----~~p 172 (262)
T 1b0u_A 98 VFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALA-----MEP 172 (262)
T ss_dssp ECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHHHHHHHHHHHHH-----TCC
T ss_pred EecCcccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcCCcccCCHHHHHHHHHHHHHh-----cCC
Confidence 555433 56789999998743 223333322 23344444433221 3446678999999999999999 888
Q ss_pred CeEEEEeccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcccCCcCccHHHHHHHHHHhCCcEEEEecCCCC
Q psy11993 538 DLLLFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGTGQTY 613 (630)
Q Consensus 538 d~VLlV~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK~D~~~~~~G~~ls~~~~~g~PI~fvg~Gq~v 613 (630)
.+|++|||++|+|...+. .+.+.+.++... +.+.|++|+- .. .+....-.|.++..|+-+
T Consensus 173 -~lllLDEPts~LD~~~~~-~~~~~l~~l~~~----g~tvi~vtHd------~~----~~~~~~d~v~~l~~G~i~ 232 (262)
T 1b0u_A 173 -DVLLFDEPTSALDPELVG-EVLRIMQQLAEE----GKTMVVVTHE------MG----FARHVSSHVIFLHQGKIE 232 (262)
T ss_dssp -SEEEEESTTTTSCHHHHH-HHHHHHHHHHHT----TCCEEEECSC------HH----HHHHHCSEEEEEETTEEE
T ss_pred -CEEEEeCCCccCCHHHHH-HHHHHHHHHHhC----CCEEEEEeCC------HH----HHHHhCCEEEEEECCEEE
Confidence 566799999999987764 344556655431 5678888871 22 222233357777777654
No 24
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=99.74 E-value=3.4e-18 Score=175.67 Aligned_cols=200 Identities=17% Similarity=0.161 Sum_probs=140.1
Q ss_pred hhhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccCC-CcCC
Q psy11993 396 VDILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHP-AAKH 474 (630)
Q Consensus 396 ~~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~-~~~~ 474 (630)
..+|++|+|.+.+| ++++|+|||||||||+++.|++++.+..|+|.+.+.|....... +++....++.+... ++.+
T Consensus 24 ~~vL~~vsl~i~~G--e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~-~~~~~i~~v~q~~~~~~~~ 100 (266)
T 4g1u_C 24 QALINDVSLHIASG--EMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPK-ALARTRAVMRQYSELAFPF 100 (266)
T ss_dssp EEEEEEEEEEEETT--CEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHH-HHHHHEEEECSCCCCCSCC
T ss_pred eeEEEeeEEEEcCC--CEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHH-HHhheEEEEecCCccCCCC
Confidence 35899999999999 99999999999999999999999999999999999988654433 44555555655433 4668
Q ss_pred cchhhhHhhhccCC-CCHHHHHHHHHHHhhhcCC-CeeeeccccchhchHHHHHHHHhhhhh-cCCCeEEEEeccccCcc
Q psy11993 475 GGREMVQLFEKGYG-KDPAEIAFRAISHARDMHI-DVVLIDTAGRMQDNEPLMRALAKLVKV-NQPDLLLFVGEALVGNE 551 (630)
Q Consensus 475 tv~env~l~~~~~~-~d~~~ia~~ai~~a~~~~~-D~vlIDTaGr~~~~~~L~~aL~kl~~~-~~Pd~VLlV~E~~~g~D 551 (630)
|+.+|+.+....+. ......+.++++.+...++ +..+-..|||++++..++++|..+... .+| .+|++|||++|+|
T Consensus 101 tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~QRv~iAraL~~~~~~~~~p-~lLllDEPts~LD 179 (266)
T 4g1u_C 101 SVSEVIQMGRAPYGGSQDRQALQQVMAQTDCLALAQRDYRVLSGGEQQRVQLARVLAQLWQPQPTP-RWLFLDEPTSALD 179 (266)
T ss_dssp BHHHHHHGGGTTSCSTTHHHHHHHHHHHTTCSTTTTSBGGGCCHHHHHHHHHHHHHHHTCCSSCCC-EEEEECCCCSSCC
T ss_pred CHHHHHHhhhhhcCcHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCC-CEEEEeCccccCC
Confidence 99999988654433 2333445556655554332 445667899999999999999921000 078 6777999999999
Q ss_pred HHHHHHHHHHHHhhcccCCCCCCeeEEEEcccCCcCccHHHHHHHHHHhCCcEEEEecCCCC
Q psy11993 552 AVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGTGQTY 613 (630)
Q Consensus 552 av~ql~~f~~~l~~~~~~~~~~~i~gIIlTK~D~~~~~~G~~ls~~~~~g~PI~fvg~Gq~v 613 (630)
...+.. +.+.+.++... .+.+.|++|+ | . +.+....--|.++..|+-+
T Consensus 180 ~~~~~~-i~~~l~~l~~~---~~~tvi~vtH-d-----l----~~~~~~~d~v~vl~~G~i~ 227 (266)
T 4g1u_C 180 LYHQQH-TLRLLRQLTRQ---EPLAVCCVLH-D-----L----NLAALYADRIMLLAQGKLV 227 (266)
T ss_dssp HHHHHH-HHHHHHHHHHH---SSEEEEEECS-C-----H----HHHHHHCSEEEEEETTEEE
T ss_pred HHHHHH-HHHHHHHHHHc---CCCEEEEEEc-C-----H----HHHHHhCCEEEEEECCEEE
Confidence 887643 44455555321 2467888887 1 1 2222233456777777654
No 25
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=99.74 E-value=3.2e-18 Score=175.62 Aligned_cols=194 Identities=15% Similarity=0.143 Sum_probs=136.2
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccC-CccHHHHHHHHHhhhcccCC-CcCC
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTF-RAGAVEQLRTHVRHLCSLHP-AAKH 474 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~-R~ga~eQLr~~~~~l~~~~~-~~~~ 474 (630)
.+|++|+|.+.+| ++++|+|||||||||+++.|++++.|..|+|.+.+.|.. .......++....++.+... ++.+
T Consensus 38 ~vL~~vsl~i~~G--ei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~Q~~~l~~~~ 115 (263)
T 2olj_A 38 EVLKGINVHIREG--EVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREEVGMVFQRFNLFPHM 115 (263)
T ss_dssp EEEEEEEEEECTT--CEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHHHHHEEEECSSCCCCTTS
T ss_pred EEEEeeEEEEcCC--CEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHHhCcEEEEeCCCcCCCCC
Confidence 4899999999999 999999999999999999999999999999999988763 11122344555566665433 5678
Q ss_pred cchhhhHhhh-ccCCCCHHH---HHHHHHHHhhhcC-CCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccC
Q psy11993 475 GGREMVQLFE-KGYGKDPAE---IAFRAISHARDMH-IDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVG 549 (630)
Q Consensus 475 tv~env~l~~-~~~~~d~~~---ia~~ai~~a~~~~-~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g 549 (630)
|+.+|+.+.. ..++..... .+.++++.+...+ .+..+-..|||++++..++++|. .+| .+|++|||++|
T Consensus 116 tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~lAraL~-----~~p-~lllLDEPts~ 189 (263)
T 2olj_A 116 TVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALA-----MEP-KIMLFDEPTSA 189 (263)
T ss_dssp CHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHT-----TCC-SEEEEESTTTT
T ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHH-----CCC-CEEEEeCCccc
Confidence 9999998753 233333322 2334444443322 24456788999999999999999 888 56679999999
Q ss_pred ccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcccCCcCccHHHHHHHHHHhCCcEEEEecCCCC
Q psy11993 550 NEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGTGQTY 613 (630)
Q Consensus 550 ~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK~D~~~~~~G~~ls~~~~~g~PI~fvg~Gq~v 613 (630)
+|...+. .+.+.+.++.. .+.+.|++|+ | . ..+....--|.++..|+-+
T Consensus 190 LD~~~~~-~~~~~l~~l~~----~g~tvi~vtH-d-----~----~~~~~~~d~v~~l~~G~i~ 238 (263)
T 2olj_A 190 LDPEMVG-EVLSVMKQLAN----EGMTMVVVTH-E-----M----GFAREVGDRVLFMDGGYII 238 (263)
T ss_dssp SCHHHHH-HHHHHHHHHHH----TTCEEEEECS-C-----H----HHHHHHCSEEEEEETTEEE
T ss_pred CCHHHHH-HHHHHHHHHHh----CCCEEEEEcC-C-----H----HHHHHhCCEEEEEECCEEE
Confidence 9987764 34455665543 1577888887 1 1 2222333457777777654
No 26
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=99.73 E-value=1.8e-18 Score=184.59 Aligned_cols=175 Identities=13% Similarity=0.067 Sum_probs=125.0
Q ss_pred hhhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCcc-HHHHHHHHHhhhcccCC-CcC
Q psy11993 396 VDILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAG-AVEQLRTHVRHLCSLHP-AAK 473 (630)
Q Consensus 396 ~~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~g-a~eQLr~~~~~l~~~~~-~~~ 473 (630)
..+|++|+|.+.+| ++++|+|||||||||++++|++++.++.|+|.+.+.|.+... .....+....++.+... ++.
T Consensus 17 ~~~L~~vsl~i~~G--e~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r~ig~vfQ~~~l~p~ 94 (359)
T 3fvq_A 17 TPVLNDISLSLDPG--EILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRERRLGYLVQEGVLFPH 94 (359)
T ss_dssp EEEEEEEEEEECTT--CEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGSCCEEECTTCCCCTT
T ss_pred EEEEEeeEEEEcCC--CEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhCCEEEEeCCCcCCCC
Confidence 45899999999999 999999999999999999999999999999999998873211 00011223444444333 667
Q ss_pred CcchhhhHhhhccCCCCHHH---HHHHHHHHhhhcC-CCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccC
Q psy11993 474 HGGREMVQLFEKGYGKDPAE---IAFRAISHARDMH-IDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVG 549 (630)
Q Consensus 474 ~tv~env~l~~~~~~~d~~~---ia~~ai~~a~~~~-~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g 549 (630)
+|+.+|+.+.....+....+ .+.++++.+...+ .+..+-..|||++|+..++++|+ .+| .+|++|||+++
T Consensus 95 ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRValArAL~-----~~P-~lLLLDEPts~ 168 (359)
T 3fvq_A 95 LTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAALARALA-----PDP-ELILLDEPFSA 168 (359)
T ss_dssp SCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHHHHHHHHHHT-----TCC-SEEEEESTTTT
T ss_pred CCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHH-----cCC-CEEEEeCCccc
Confidence 99999998865444333222 2344555444433 24557788999999999999999 889 56779999999
Q ss_pred ccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 550 NEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 550 ~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
+|...+...+. .+.++.. ..+++.|++|+
T Consensus 169 LD~~~r~~l~~-~l~~~~~---~~g~tvi~vTH 197 (359)
T 3fvq_A 169 LDEQLRRQIRE-DMIAALR---ANGKSAVFVSH 197 (359)
T ss_dssp SCHHHHHHHHH-HHHHHHH---HTTCEEEEECC
T ss_pred CCHHHHHHHHH-HHHHHHH---hCCCEEEEEeC
Confidence 99876544332 2322211 13688899998
No 27
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.73 E-value=2.7e-18 Score=175.51 Aligned_cols=171 Identities=19% Similarity=0.185 Sum_probs=125.5
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccCC-CcCCc
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHP-AAKHG 475 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~-~~~~t 475 (630)
.+|++++|.+.+| ++++|+|||||||||+++.|++++.|..|+|.+.+.+..+. ..+++....++.+... ++.+|
T Consensus 29 ~vl~~vsl~i~~G--ei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~--~~~~~~~i~~v~q~~~l~~~lt 104 (256)
T 1vpl_A 29 EILKGISFEIEEG--EIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEE--PHEVRKLISYLPEEAGAYRNMQ 104 (256)
T ss_dssp EEEEEEEEEECTT--CEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTC--HHHHHTTEEEECTTCCCCTTSB
T ss_pred EEEEeeEEEEcCC--cEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcc--HHHHhhcEEEEcCCCCCCCCCc
Confidence 4899999999999 99999999999999999999999999999999998887442 2234444455555433 55689
Q ss_pred chhhhHhhhccCCCCHH---HHHHHHHHHhhhcC-CCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCcc
Q psy11993 476 GREMVQLFEKGYGKDPA---EIAFRAISHARDMH-IDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNE 551 (630)
Q Consensus 476 v~env~l~~~~~~~d~~---~ia~~ai~~a~~~~-~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~D 551 (630)
+.+|+.++...++.... +.+.++++.+...+ .+..+-..|||++++..++++|. .+| .+|++|||++|+|
T Consensus 105 v~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~-----~~p-~lllLDEPts~LD 178 (256)
T 1vpl_A 105 GIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALM-----VNP-RLAILDEPTSGLD 178 (256)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHT-----TCC-SEEEEESTTTTCC
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHH-----cCC-CEEEEeCCccccC
Confidence 99999886543343332 22344454443322 23446678999999999999999 888 5666999999999
Q ss_pred HHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 552 AVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 552 av~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
...+. .+.+.+.++.. .+.+.|++|+
T Consensus 179 ~~~~~-~l~~~l~~l~~----~g~tiiivtH 204 (256)
T 1vpl_A 179 VLNAR-EVRKILKQASQ----EGLTILVSSH 204 (256)
T ss_dssp HHHHH-HHHHHHHHHHH----TTCEEEEEEC
T ss_pred HHHHH-HHHHHHHHHHh----CCCEEEEEcC
Confidence 87764 34455655542 2567788887
No 28
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.73 E-value=3.7e-18 Score=172.61 Aligned_cols=194 Identities=15% Similarity=0.058 Sum_probs=134.8
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccCC-CcCCc
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHP-AAKHG 475 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~-~~~~t 475 (630)
.+|++++|.+.+| ++++|+|||||||||+++.|++++.|..|+|.+.+.+.......+..+....++.+... ++.+|
T Consensus 20 ~vl~~vsl~i~~G--e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~lt 97 (240)
T 1ji0_A 20 HAIKGIDLKVPRG--QIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPELT 97 (240)
T ss_dssp EEEEEEEEEEETT--CEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTTEEEECSSCCCCTTSB
T ss_pred eEEeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhCCEEEEecCCccCCCCc
Confidence 4799999999999 99999999999999999999999999999999999887544333222333455555433 55689
Q ss_pred chhhhHhhhccC-CCCH-HHHHHHHHHHhh-hcC-CCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCcc
Q psy11993 476 GREMVQLFEKGY-GKDP-AEIAFRAISHAR-DMH-IDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNE 551 (630)
Q Consensus 476 v~env~l~~~~~-~~d~-~~ia~~ai~~a~-~~~-~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~D 551 (630)
+.+|+.+..... .... ...+.++++.+. ... .+..+-..|||++++..++++|. .+| .+|++|||++|+|
T Consensus 98 v~enl~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~-----~~p-~lllLDEPts~LD 171 (240)
T 1ji0_A 98 VYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALM-----SRP-KLLMMDEPSLGLA 171 (240)
T ss_dssp HHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHT-----TCC-SEEEEECTTTTCC
T ss_pred HHHHHHHhhhcCCCHHHHHHHHHHHHHHcccHhhHhcCChhhCCHHHHHHHHHHHHHH-----cCC-CEEEEcCCcccCC
Confidence 999998754211 1222 223344554442 322 35556788999999999999999 888 5667999999999
Q ss_pred HHHHHHHHHHHHhhcccCCCCCCeeEEEEcccCCcCccHHHHHHHHHHhCCcEEEEecCCCC
Q psy11993 552 AVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGTGQTY 613 (630)
Q Consensus 552 av~ql~~f~~~l~~~~~~~~~~~i~gIIlTK~D~~~~~~G~~ls~~~~~g~PI~fvg~Gq~v 613 (630)
...+. .+.+.+.++.. .+.+.|++|+- ...+ ....--|.++..|+-+
T Consensus 172 ~~~~~-~l~~~l~~~~~----~g~tvi~vtHd------~~~~----~~~~d~v~~l~~G~i~ 218 (240)
T 1ji0_A 172 PILVS-EVFEVIQKINQ----EGTTILLVEQN------ALGA----LKVAHYGYVLETGQIV 218 (240)
T ss_dssp HHHHH-HHHHHHHHHHH----TTCCEEEEESC------HHHH----HHHCSEEEEEETTEEE
T ss_pred HHHHH-HHHHHHHHHHH----CCCEEEEEecC------HHHH----HHhCCEEEEEECCEEE
Confidence 87764 34455655542 25678888871 1112 2222357777777654
No 29
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=99.73 E-value=2.2e-18 Score=185.19 Aligned_cols=172 Identities=17% Similarity=0.099 Sum_probs=127.3
Q ss_pred hhhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccCC-CcCC
Q psy11993 396 VDILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHP-AAKH 474 (630)
Q Consensus 396 ~~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~-~~~~ 474 (630)
..+|++|+|.+.+| ++++|+||||||||||+++|++++.++.|+|.+.+.|....... +....++.+... ++.+
T Consensus 16 ~~~L~~vsl~i~~G--e~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~---~r~ig~VfQ~~~l~p~l 90 (381)
T 3rlf_A 16 VVVSKDINLDIHEG--EFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPA---ERGVGMVFQSYALYPHL 90 (381)
T ss_dssp EEEEEEEEEEECTT--CEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGG---GSCEEEECTTCCCCTTS
T ss_pred EEEEeeeEEEECCC--CEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHH---HCCEEEEecCCcCCCCC
Confidence 45899999999999 99999999999999999999999999999999999887544332 122344444333 6779
Q ss_pred cchhhhHhhhccCCCCHHHHHH---HHHHHhhhcC-CCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCc
Q psy11993 475 GGREMVQLFEKGYGKDPAEIAF---RAISHARDMH-IDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGN 550 (630)
Q Consensus 475 tv~env~l~~~~~~~d~~~ia~---~ai~~a~~~~-~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~ 550 (630)
|+.+|+.+....++.+..+... ++++.+...+ .+..+-.+||+++|+..|+++|. .+| .+|++|||++++
T Consensus 91 tV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQRVaiArAL~-----~~P-~lLLLDEPts~L 164 (381)
T 3rlf_A 91 SVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLV-----AEP-SVFLLDEPLSNL 164 (381)
T ss_dssp CHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTCCGGGSCHHHHHHHHHHHHHH-----HCC-SEEEEESTTTTS
T ss_pred CHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhHCCHHHHHHHHHHHHHH-----cCC-CEEEEECCCcCC
Confidence 9999999876655555544433 3444333322 24556788999999999999999 889 567799999999
Q ss_pred cHHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 551 EAVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 551 Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
|...+.. +.+.+.++.. ..+++.|++|+
T Consensus 165 D~~~~~~-l~~~l~~l~~---~~g~tii~vTH 192 (381)
T 3rlf_A 165 DAALRVQ-MRIEISRLHK---RLGRTMIYVTH 192 (381)
T ss_dssp CHHHHHH-HHHHHHHHHH---HHCCEEEEECS
T ss_pred CHHHHHH-HHHHHHHHHH---hCCCEEEEEEC
Confidence 9876543 3334444422 12678899998
No 30
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=99.71 E-value=3.8e-18 Score=181.58 Aligned_cols=170 Identities=14% Similarity=0.138 Sum_probs=127.5
Q ss_pred hhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccCC-CcCCcc
Q psy11993 398 ILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHP-AAKHGG 476 (630)
Q Consensus 398 iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~-~~~~tv 476 (630)
+|++++|.+.+| ++++|+|||||||||++++||+++.++.|+|.+.+.|...... .++...++.+... ++.+|+
T Consensus 15 ~l~~vsl~i~~G--e~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~---~~r~ig~v~Q~~~l~~~ltv 89 (348)
T 3d31_A 15 SLDNLSLKVESG--EYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSP---EKHDIAFVYQNYSLFPHMNV 89 (348)
T ss_dssp EEEEEEEEECTT--CEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCH---HHHTCEEECTTCCCCTTSCH
T ss_pred EEeeeEEEEcCC--CEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCch---hhCcEEEEecCcccCCCCCH
Confidence 889999999999 9999999999999999999999999999999999988754332 2344555655443 667899
Q ss_pred hhhhHhhhccCCCCHHHHHHHHHHHhhhcCC-CeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCccHHHH
Q psy11993 477 REMVQLFEKGYGKDPAEIAFRAISHARDMHI-DVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQ 555 (630)
Q Consensus 477 ~env~l~~~~~~~d~~~ia~~ai~~a~~~~~-D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~Dav~q 555 (630)
.+|+.+....++......+.++++.+...++ +..+-..|||++|+..++++|. .+| .+|++|||++++|...+
T Consensus 90 ~enl~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAraL~-----~~P-~lLLLDEP~s~LD~~~~ 163 (348)
T 3d31_A 90 KKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALV-----TNP-KILLLDEPLSALDPRTQ 163 (348)
T ss_dssp HHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTT-----SCC-SEEEEESSSTTSCHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHH-----cCC-CEEEEECccccCCHHHH
Confidence 9999886543222211445556666554443 4556788999999999999999 888 56669999999998765
Q ss_pred HHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 556 LVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 556 l~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
. .+.+.+.++.. ..+++.|++|+
T Consensus 164 ~-~l~~~l~~l~~---~~g~tii~vTH 186 (348)
T 3d31_A 164 E-NAREMLSVLHK---KNKLTVLHITH 186 (348)
T ss_dssp H-HHHHHHHHHHH---HTTCEEEEEES
T ss_pred H-HHHHHHHHHHH---hcCCEEEEEeC
Confidence 4 34445555432 12578889997
No 31
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=99.71 E-value=5.8e-18 Score=180.54 Aligned_cols=172 Identities=15% Similarity=0.090 Sum_probs=125.1
Q ss_pred hhhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccCC-CcCC
Q psy11993 396 VDILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHP-AAKH 474 (630)
Q Consensus 396 ~~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~-~~~~ 474 (630)
..+|++++|.+.+| ++++|+|||||||||++++|++++.+..|+|.+.+.|....... +....++.+... ++.+
T Consensus 28 ~~vl~~vsl~i~~G--e~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~---~r~ig~v~Q~~~l~~~l 102 (355)
T 1z47_A 28 ARSVRGVSFQIREG--EMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQ---KRNVGLVFQNYALFQHM 102 (355)
T ss_dssp TTCEEEEEEEEETT--CEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGG---GSSEEEECGGGCCCTTS
T ss_pred CEEEeeeEEEECCC--CEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCChh---hCcEEEEecCcccCCCC
Confidence 35899999999999 99999999999999999999999999999999999887543221 223344444333 6678
Q ss_pred cchhhhHhhhccCCCCHHHH---HHHHHHHhhhcC-CCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCc
Q psy11993 475 GGREMVQLFEKGYGKDPAEI---AFRAISHARDMH-IDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGN 550 (630)
Q Consensus 475 tv~env~l~~~~~~~d~~~i---a~~ai~~a~~~~-~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~ 550 (630)
|+.+|+.+....++....+. +.++++.+...+ .+..+-..|||++|+..|+++|. .+| .+|++|||++++
T Consensus 103 tv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRvalArAL~-----~~P-~lLLLDEP~s~L 176 (355)
T 1z47_A 103 TVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFPHELSGGQQQRVALARALA-----PRP-QVLLFDEPFAAI 176 (355)
T ss_dssp CHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHT-----TCC-SEEEEESTTCCS
T ss_pred CHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHH-----cCC-CEEEEeCCcccC
Confidence 99999988654444443332 334444443332 24456778999999999999999 889 566799999999
Q ss_pred cHHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 551 EAVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 551 Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
|...+.. +.+.+.++.. ..+++.|++|+
T Consensus 177 D~~~r~~-l~~~l~~l~~---~~g~tvi~vTH 204 (355)
T 1z47_A 177 DTQIRRE-LRTFVRQVHD---EMGVTSVFVTH 204 (355)
T ss_dssp SHHHHHH-HHHHHHHHHH---HHTCEEEEECS
T ss_pred CHHHHHH-HHHHHHHHHH---hcCCEEEEECC
Confidence 9876543 3344444432 12578888887
No 32
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=99.70 E-value=7.5e-18 Score=180.21 Aligned_cols=171 Identities=18% Similarity=0.102 Sum_probs=125.5
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccCC-CcCCc
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHP-AAKHG 475 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~-~~~~t 475 (630)
.+|++++|.+.+| ++++|+|||||||||++++||+++.++.|+|.+.+.|....... ++...++.+... ++.+|
T Consensus 17 ~vl~~vsl~i~~G--e~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~---~r~ig~v~Q~~~l~~~lt 91 (362)
T 2it1_A 17 TALNNINLKIKDG--EFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPK---DRNVGLVFQNWALYPHMT 91 (362)
T ss_dssp EEEEEEEEEECTT--CEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG---GTTEEEECTTCCCCTTSC
T ss_pred EEEEeeEEEECCC--CEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHh---HCcEEEEecCcccCCCCC
Confidence 4789999999999 99999999999999999999999999999999999887543322 223445555433 66789
Q ss_pred chhhhHhhhccCCCCHHHH---HHHHHHHhhhcCC-CeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCcc
Q psy11993 476 GREMVQLFEKGYGKDPAEI---AFRAISHARDMHI-DVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNE 551 (630)
Q Consensus 476 v~env~l~~~~~~~d~~~i---a~~ai~~a~~~~~-D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~D 551 (630)
+.+|+.+....++....+. +.++++.+...++ +..+-..|||++|+..++++|. .+| .+|++|||++++|
T Consensus 92 v~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~-----~~P-~lLLLDEP~s~LD 165 (362)
T 2it1_A 92 VYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARALV-----KEP-EVLLLDEPLSNLD 165 (362)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHHT-----TCC-SEEEEESGGGGSC
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhhCChhhCCHHHHHHHHHHHHHH-----cCC-CEEEEECccccCC
Confidence 9999988654444333332 3445554444332 4456788999999999999999 888 5667999999999
Q ss_pred HHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 552 AVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 552 av~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
...+.. +.+.+.++.. ..+++.|++|+
T Consensus 166 ~~~r~~-l~~~l~~l~~---~~g~tvi~vTH 192 (362)
T 2it1_A 166 ALLRLE-VRAELKRLQK---ELGITTVYVTH 192 (362)
T ss_dssp HHHHHH-HHHHHHHHHH---HHTCEEEEEES
T ss_pred HHHHHH-HHHHHHHHHH---hCCCEEEEECC
Confidence 876543 3444544432 12577888887
No 33
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=99.70 E-value=6.4e-18 Score=180.52 Aligned_cols=171 Identities=16% Similarity=0.085 Sum_probs=125.0
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccCC-CcCCc
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHP-AAKHG 475 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~-~~~~t 475 (630)
.+|++++|.+.+| ++++|+|||||||||++++|++++.++.|+|.+.+.|....... +....++.+... ++.+|
T Consensus 17 ~vl~~vsl~i~~G--e~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~---~r~ig~v~Q~~~l~~~lt 91 (359)
T 2yyz_A 17 KAVDGVSFEVKDG--EFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPK---YREVGMVFQNYALYPHMT 91 (359)
T ss_dssp EEEEEEEEEECTT--CEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG---GTTEEEECSSCCCCTTSC
T ss_pred EEEeeeEEEEcCC--CEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChh---hCcEEEEecCcccCCCCC
Confidence 4789999999999 99999999999999999999999999999999999887543322 223445555433 66789
Q ss_pred chhhhHhhhccCCCCHHH---HHHHHHHHhhhcC-CCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCcc
Q psy11993 476 GREMVQLFEKGYGKDPAE---IAFRAISHARDMH-IDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNE 551 (630)
Q Consensus 476 v~env~l~~~~~~~d~~~---ia~~ai~~a~~~~-~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~D 551 (630)
+.+|+.+....++....+ .+.++++.+...+ .+..+-..|||++|+..++++|. .+| .+|++|||++++|
T Consensus 92 v~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSgGq~QRvalArAL~-----~~P-~lLLLDEP~s~LD 165 (359)
T 2yyz_A 92 VFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALARALV-----KQP-KVLLFDEPLSNLD 165 (359)
T ss_dssp HHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHT-----TCC-SEEEEESTTTTSC
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHH-----cCC-CEEEEECCcccCC
Confidence 999998865444332222 2344555444333 24456788999999999999999 888 5667999999999
Q ss_pred HHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 552 AVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 552 av~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
...+. .+.+.+.++.. ..+++.|++|+
T Consensus 166 ~~~r~-~l~~~l~~l~~---~~g~tvi~vTH 192 (359)
T 2yyz_A 166 ANLRM-IMRAEIKHLQQ---ELGITSVYVTH 192 (359)
T ss_dssp HHHHH-HHHHHHHHHHH---HHCCEEEEEES
T ss_pred HHHHH-HHHHHHHHHHH---hcCCEEEEEcC
Confidence 87653 33444544432 12577888887
No 34
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=99.70 E-value=8.5e-18 Score=180.37 Aligned_cols=171 Identities=15% Similarity=0.080 Sum_probs=121.6
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccCC-CcCCc
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHP-AAKHG 475 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~-~~~~t 475 (630)
.+|++++|.+.+| ++++|+|||||||||++++||+++.+..|+|.+.+.|....... ++...++.+... ++.+|
T Consensus 25 ~vl~~vsl~i~~G--e~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~---~r~ig~v~Q~~~l~~~lt 99 (372)
T 1v43_A 25 TAVNKLNLTIKDG--EFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPK---DRNISMVFQSYAVWPHMT 99 (372)
T ss_dssp EEEEEEEEEECTT--CEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG---GGTEEEEEC------CCC
T ss_pred EEEeeeEEEECCC--CEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChh---hCcEEEEecCcccCCCCC
Confidence 4799999999999 99999999999999999999999999999999999887543322 223444544333 66789
Q ss_pred chhhhHhhhccCCCCHHHH---HHHHHHHhhhcC-CCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCcc
Q psy11993 476 GREMVQLFEKGYGKDPAEI---AFRAISHARDMH-IDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNE 551 (630)
Q Consensus 476 v~env~l~~~~~~~d~~~i---a~~ai~~a~~~~-~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~D 551 (630)
+.+|+.+....++....+. +.++++.+...+ .+..+-.+|||++|+..++++|. .+| .+|++|||++++|
T Consensus 100 v~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~-----~~P-~lLLLDEP~s~LD 173 (372)
T 1v43_A 100 VYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIV-----VEP-DVLLMDEPLSNLD 173 (372)
T ss_dssp HHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHT-----TCC-SEEEEESTTTTSC
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHh-----cCC-CEEEEcCCCccCC
Confidence 9999988654444444332 334444444332 24446678999999999999999 888 5667999999999
Q ss_pred HHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 552 AVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 552 av~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
...+.. +.+.+.++.. ..+++.|++|+
T Consensus 174 ~~~r~~-l~~~l~~l~~---~~g~tvi~vTH 200 (372)
T 1v43_A 174 AKLRVA-MRAEIKKLQQ---KLKVTTIYVTH 200 (372)
T ss_dssp HHHHHH-HHHHHHHHHH---HHTCEEEEEES
T ss_pred HHHHHH-HHHHHHHHHH---hCCCEEEEEeC
Confidence 876543 3344544432 12577888887
No 35
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=99.69 E-value=3.4e-18 Score=170.24 Aligned_cols=166 Identities=14% Similarity=0.152 Sum_probs=121.1
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccCC-CcCCc
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHP-AAKHG 475 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~-~~~~t 475 (630)
.+|++++|.+.+| ++++|+|||||||||+++.|++++.+..|+|.+.+.+.. ..+....++.+... ++.+|
T Consensus 23 ~il~~vsl~i~~G--e~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~------~~~~~i~~v~q~~~~~~~~t 94 (214)
T 1sgw_A 23 PVLERITMTIEKG--NVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPIT------KVKGKIFFLPEEIIVPRKIS 94 (214)
T ss_dssp EEEEEEEEEEETT--CCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGG------GGGGGEEEECSSCCCCTTSB
T ss_pred eEEeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhh------hhcCcEEEEeCCCcCCCCCC
Confidence 5899999999999 999999999999999999999999999999999887763 12333445555433 55689
Q ss_pred chhhhHhhhccCC--CCHHHHHHHHHHHhhhcCCCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCccHH
Q psy11993 476 GREMVQLFEKGYG--KDPAEIAFRAISHARDMHIDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAV 553 (630)
Q Consensus 476 v~env~l~~~~~~--~d~~~ia~~ai~~a~~~~~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~Dav 553 (630)
+.+|+.++...++ .+ ...+.++++.+....++..+-..|||++++..++++|. .+| .+|++|||++++|..
T Consensus 95 v~enl~~~~~~~~~~~~-~~~~~~~l~~~gl~~~~~~~~~LSgGqkqrv~laraL~-----~~p-~lllLDEPts~LD~~ 167 (214)
T 1sgw_A 95 VEDYLKAVASLYGVKVN-KNEIMDALESVEVLDLKKKLGELSQGTIRRVQLASTLL-----VNA-EIYVLDDPVVAIDED 167 (214)
T ss_dssp HHHHHHHHHHHTTCCCC-HHHHHHHHHHTTCCCTTSBGGGSCHHHHHHHHHHHHTT-----SCC-SEEEEESTTTTSCTT
T ss_pred HHHHHHHHHHhcCCchH-HHHHHHHHHHcCCCcCCCChhhCCHHHHHHHHHHHHHH-----hCC-CEEEEECCCcCCCHH
Confidence 9999987643322 23 33445566655443334445678999999999999998 888 566699999999976
Q ss_pred HHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 554 DQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 554 ~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
.+. .+.+.+.++.. .+.+.|++|+
T Consensus 168 ~~~-~l~~~l~~~~~----~g~tiiivtH 191 (214)
T 1sgw_A 168 SKH-KVLKSILEILK----EKGIVIISSR 191 (214)
T ss_dssp THH-HHHHHHHHHHH----HHSEEEEEES
T ss_pred HHH-HHHHHHHHHHh----CCCEEEEEeC
Confidence 543 33344544432 1456778887
No 36
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=99.69 E-value=9.8e-18 Score=180.00 Aligned_cols=171 Identities=14% Similarity=0.072 Sum_probs=124.8
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCC------ccHHHHHHHHHhhhcccCC
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFR------AGAVEQLRTHVRHLCSLHP 470 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R------~ga~eQLr~~~~~l~~~~~ 470 (630)
.+|++++|.+.+| ++++|+|||||||||++++||+++.++.|+|.+.+.|... .... ++...++.+...
T Consensus 17 ~vl~~vsl~i~~G--e~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~~---~r~ig~v~Q~~~ 91 (372)
T 1g29_1 17 TAVREMSLEVKDG--EFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPK---DRDIAMVFQSYA 91 (372)
T ss_dssp EEEEEEEEEEETT--CEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGG---GSSEEEECSCCC
T ss_pred EEEeeeEEEEcCC--CEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCHh---HCCEEEEeCCCc
Confidence 5789999999999 9999999999999999999999999999999999887643 2111 223444544433
Q ss_pred -CcCCcchhhhHhhhccCCCCHHH---HHHHHHHHhhhcC-CCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEec
Q psy11993 471 -AAKHGGREMVQLFEKGYGKDPAE---IAFRAISHARDMH-IDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGE 545 (630)
Q Consensus 471 -~~~~tv~env~l~~~~~~~d~~~---ia~~ai~~a~~~~-~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E 545 (630)
++.+|+.+|+.+....++....+ .+.++++.+...+ .+..+-.+|||++|+..++++|+ .+| .+|++||
T Consensus 92 l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~-----~~P-~lLLLDE 165 (372)
T 1g29_1 92 LYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIV-----RKP-QVFLMDE 165 (372)
T ss_dssp CCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHHHH-----TCC-SEEEEEC
T ss_pred cCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCCcccCCHHHHHHHHHHHHHh-----cCC-CEEEECC
Confidence 66799999998865544444333 2344555444333 24556788999999999999999 889 5667999
Q ss_pred cccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 546 ALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 546 ~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
|++++|...+.. +.+.+.++.. ..+++.|++|+
T Consensus 166 P~s~LD~~~r~~-l~~~l~~l~~---~~g~tvi~vTH 198 (372)
T 1g29_1 166 PLSNLDAKLRVR-MRAELKKLQR---QLGVTTIYVTH 198 (372)
T ss_dssp TTTTSCHHHHHH-HHHHHHHHHH---HHTCEEEEEES
T ss_pred CCccCCHHHHHH-HHHHHHHHHH---hcCCEEEEECC
Confidence 999999876543 3344444432 12578888887
No 37
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=99.69 E-value=3.8e-17 Score=166.16 Aligned_cols=173 Identities=16% Similarity=0.107 Sum_probs=117.6
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHH--HHhcCCeEEEeecccCCccHHHHHHHHHhhhcccCC-CcC
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFW--LIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHP-AAK 473 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~--l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~-~~~ 473 (630)
.+|++++|.+.+| ++++|+|||||||||+++.|+++ +.+..|+|.+.+.|.......+..+....++.+.+. ++.
T Consensus 17 ~vl~~vsl~i~~G--e~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 94 (250)
T 2d2e_A 17 TILKGVNLVVPKG--EVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERARKGLFLAFQYPVEVPG 94 (250)
T ss_dssp EEEEEEEEEEETT--CEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHHTTBCCCCCCCC-CCS
T ss_pred EEEeceEEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHhCcEEEeccCCccccC
Confidence 4899999999999 99999999999999999999998 678899999999887544333222222334444333 556
Q ss_pred CcchhhhHhhhcc-CC--CCHH---HHHHHHHHHhhh-cC-CCeeeec-cccchhchHHHHHHHHhhhhhcCCCeEEEEe
Q psy11993 474 HGGREMVQLFEKG-YG--KDPA---EIAFRAISHARD-MH-IDVVLID-TAGRMQDNEPLMRALAKLVKVNQPDLLLFVG 544 (630)
Q Consensus 474 ~tv~env~l~~~~-~~--~d~~---~ia~~ai~~a~~-~~-~D~vlID-TaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~ 544 (630)
+|+.+|+.+.... .+ .... ..+.++++.+.. .. .+..+-. .|||++++..++++|. .+| .+|++|
T Consensus 95 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGqkQrv~iAraL~-----~~p-~lllLD 168 (250)
T 2d2e_A 95 VTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNEGFSGGEKKRNEILQLLV-----LEP-TYAVLD 168 (250)
T ss_dssp CBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTTCC----HHHHHHHHHHHH-----HCC-SEEEEE
T ss_pred CCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHH-----cCC-CEEEEe
Confidence 8999999764321 11 1222 223344444433 12 2333456 8999999999999999 888 566699
Q ss_pred ccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 545 EALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 545 E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
||++|+|...+.. +.+.+.++.. .+.+.|++|+
T Consensus 169 EPts~LD~~~~~~-l~~~l~~l~~----~g~tvi~vtH 201 (250)
T 2d2e_A 169 ETDSGLDIDALKV-VARGVNAMRG----PNFGALVITH 201 (250)
T ss_dssp CGGGTTCHHHHHH-HHHHHHHHCS----TTCEEEEECS
T ss_pred CCCcCCCHHHHHH-HHHHHHHHHh----cCCEEEEEec
Confidence 9999999877643 4455665532 2577888998
No 38
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=99.69 E-value=9.2e-18 Score=172.31 Aligned_cols=169 Identities=16% Similarity=0.158 Sum_probs=124.2
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccC--CCcCC
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLH--PAAKH 474 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~--~~~~~ 474 (630)
.+|++++|.+.+| ++++|+|||||||||+++.|++++.+..|+|.+.+.+... . .++....++.+.+ .++.+
T Consensus 21 ~vl~~vsl~i~~G--e~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~---~-~~~~~i~~v~q~~~~~~~~~ 94 (266)
T 2yz2_A 21 KALENVSLVINEG--ECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKG---Y-EIRRNIGIAFQYPEDQFFAE 94 (266)
T ss_dssp EEEEEEEEEECTT--CEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCH---H-HHGGGEEEECSSGGGGCCCS
T ss_pred ceeeeeEEEEcCC--CEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECch---H-HhhhhEEEEeccchhhcCCC
Confidence 4799999999999 9999999999999999999999999999999999887632 1 3344455555542 34568
Q ss_pred cchhhhHhhhccC-C-CCHHHHHHHHHHHhhhc--C-CCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccC
Q psy11993 475 GGREMVQLFEKGY-G-KDPAEIAFRAISHARDM--H-IDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVG 549 (630)
Q Consensus 475 tv~env~l~~~~~-~-~d~~~ia~~ai~~a~~~--~-~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g 549 (630)
|+.+|+.+....+ . ....+.+.++++.+... + .+..+-..|||++++..++++|. .+| .+|++|||++|
T Consensus 95 tv~enl~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~qRv~lAraL~-----~~p-~lllLDEPts~ 168 (266)
T 2yz2_A 95 RVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIV-----HEP-DILILDEPLVG 168 (266)
T ss_dssp SHHHHHHHTTTTTCTTSCSHHHHHHHHHHTTCCHHHHTTCCGGGSCHHHHHHHHHHHHHT-----TCC-SEEEEESTTTT
T ss_pred cHHHHHHHHHHhcCCHHHHHHHHHHHHHHcCcCCcccccCChhhCCHHHHHHHHHHHHHH-----cCC-CEEEEcCcccc
Confidence 9999998754322 1 12223344555554432 2 24456788999999999999999 888 56669999999
Q ss_pred ccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 550 NEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 550 ~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
+|...+. .+.+.+.++.. .+.+.|++|+
T Consensus 169 LD~~~~~-~l~~~l~~l~~----~g~tii~vtH 196 (266)
T 2yz2_A 169 LDREGKT-DLLRIVEKWKT----LGKTVILISH 196 (266)
T ss_dssp CCHHHHH-HHHHHHHHHHH----TTCEEEEECS
T ss_pred CCHHHHH-HHHHHHHHHHH----cCCEEEEEeC
Confidence 9987654 34455555532 1567888888
No 39
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=99.69 E-value=1.3e-17 Score=169.31 Aligned_cols=168 Identities=23% Similarity=0.164 Sum_probs=121.9
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccCCCcCCcc
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHPAAKHGG 476 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~~~~~tv 476 (630)
.+|++++|.+.+| ++++|+|||||||||+++.|++++.+..|+|.+.+.|+..... .+++....++.+.......|+
T Consensus 23 ~vl~~vsl~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~-~~~~~~i~~v~Q~~~l~~~tv 99 (247)
T 2ff7_A 23 VILDNINLSIKQG--EVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADP-NWLRRQVGVVLQDNVLLNRSI 99 (247)
T ss_dssp EEEEEEEEEEETT--CEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCH-HHHHHHEEEECSSCCCTTSBH
T ss_pred ceeeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCH-HHHHhcEEEEeCCCccccccH
Confidence 4899999999999 9999999999999999999999999999999999988754332 345555666666544445799
Q ss_pred hhhhHhhhccCCCCHHHHHHHHHHHhhhc--------CCC----eeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEe
Q psy11993 477 REMVQLFEKGYGKDPAEIAFRAISHARDM--------HID----VVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVG 544 (630)
Q Consensus 477 ~env~l~~~~~~~d~~~ia~~ai~~a~~~--------~~D----~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~ 544 (630)
.+|+.+... ..+.. .+.++++.+... +++ ...-..|||++++..++++|. .+| .+|++|
T Consensus 100 ~enl~~~~~--~~~~~-~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~-----~~p-~lllLD 170 (247)
T 2ff7_A 100 IDNISLANP--GMSVE-KVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALV-----NNP-KILIFD 170 (247)
T ss_dssp HHHHTTTCT--TCCHH-HHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHT-----TCC-SEEEEC
T ss_pred HHHHhccCC--CCCHH-HHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHh-----cCC-CEEEEe
Confidence 999987532 12222 223333332211 111 113468999999999999999 888 566699
Q ss_pred ccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 545 EALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 545 E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
||++++|...+. .+.+.+.++.. +.+.|++|+
T Consensus 171 EPts~LD~~~~~-~i~~~l~~~~~-----g~tviivtH 202 (247)
T 2ff7_A 171 EATSALDYESEH-VIMRNMHKICK-----GRTVIIIAH 202 (247)
T ss_dssp CCCSCCCHHHHH-HHHHHHHHHHT-----TSEEEEECS
T ss_pred CCcccCCHHHHH-HHHHHHHHHcC-----CCEEEEEeC
Confidence 999999987764 34455655531 577888898
No 40
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=99.69 E-value=9e-18 Score=175.81 Aligned_cols=189 Identities=16% Similarity=0.148 Sum_probs=135.5
Q ss_pred hhhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccCCCcCCc
Q psy11993 396 VDILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHPAAKHG 475 (630)
Q Consensus 396 ~~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~~~~~t 475 (630)
..+|++|+|.+++| ++++|||||||||||+++.|++++.+..|+|.+.+.|+.... ...+|....++.+.+..+..|
T Consensus 67 ~~vL~~isl~i~~G--e~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~G~~i~~~~-~~~~r~~i~~v~Q~~~lf~~T 143 (306)
T 3nh6_A 67 RETLQDVSFTVMPG--QTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVT-QASLRSHIGVVPQDTVLFNDT 143 (306)
T ss_dssp CEEEEEEEEEECTT--CEEEEESSSCHHHHHHHHHHTTSSCCSEEEEEETTEETTSBC-HHHHHHTEEEECSSCCCCSEE
T ss_pred CceeeeeeEEEcCC--CEEEEECCCCchHHHHHHHHHcCCCCCCcEEEECCEEcccCC-HHHHhcceEEEecCCccCccc
Confidence 35899999999999 999999999999999999999999999999999999986554 346677777787766666789
Q ss_pred chhhhHhhhccCCCCHHHHHHHHHHHhhh--------cCCCeee----eccccchhchHHHHHHHHhhhhhcCCCeEEEE
Q psy11993 476 GREMVQLFEKGYGKDPAEIAFRAISHARD--------MHIDVVL----IDTAGRMQDNEPLMRALAKLVKVNQPDLLLFV 543 (630)
Q Consensus 476 v~env~l~~~~~~~d~~~ia~~ai~~a~~--------~~~D~vl----IDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV 543 (630)
+++|+.+...... ... ..++++.+.. .+++..+ ...|||++++..|+|+|. .+| .+|++
T Consensus 144 v~eNi~~~~~~~~--~~~-~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~-----~~p-~iLlL 214 (306)
T 3nh6_A 144 IADNIRYGRVTAG--NDE-VEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTIL-----KAP-GIILL 214 (306)
T ss_dssp HHHHHHTTSTTCC--HHH-HHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHH-----HCC-SEEEE
T ss_pred HHHHHHhhcccCC--HHH-HHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHH-----hCC-CEEEE
Confidence 9999987543222 211 2222222211 1333332 457999999999999999 788 56679
Q ss_pred eccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcccCCcCccHHHHHHHHHHhCCcEEEEecCCCC
Q psy11993 544 GEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGTGQTY 613 (630)
Q Consensus 544 ~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK~D~~~~~~G~~ls~~~~~g~PI~fvg~Gq~v 613 (630)
|||++++|...+... .+.+.++.. +.+.|++|+ ....+ .. .-.|.++..|+-+
T Consensus 215 DEPts~LD~~~~~~i-~~~l~~l~~-----~~Tvi~itH------~l~~~----~~-aD~i~vl~~G~iv 267 (306)
T 3nh6_A 215 DEATSALDTSNERAI-QASLAKVCA-----NRTTIVVAH------RLSTV----VN-ADQILVIKDGCIV 267 (306)
T ss_dssp ECCSSCCCHHHHHHH-HHHHHHHHT-----TSEEEEECC------SHHHH----HT-CSEEEEEETTEEE
T ss_pred ECCcccCCHHHHHHH-HHHHHHHcC-----CCEEEEEEc------ChHHH----Hc-CCEEEEEECCEEE
Confidence 999999998776543 445555432 457788887 12222 11 3457777777654
No 41
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=99.69 E-value=2.2e-17 Score=168.10 Aligned_cols=191 Identities=14% Similarity=0.083 Sum_probs=133.6
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccCC-CcCCc
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHP-AAKHG 475 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~-~~~~t 475 (630)
.+|++++|.+.+| ++++|+|||||||||+++.|++++.+. |+|.+.+.+...... .+++....++.+... ++.+|
T Consensus 14 ~vl~~vsl~i~~G--e~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~~~~~~~-~~~~~~i~~v~q~~~~~~~~t 89 (249)
T 2qi9_C 14 TRLGPLSGEVRAG--EILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPLEAWSA-TKLALHRAYLSQQQTPPFATP 89 (249)
T ss_dssp TTEEEEEEEEETT--CEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEEGGGSCH-HHHHHHEEEECSCCCCCTTCB
T ss_pred EEEeeeEEEEcCC--CEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEECCcCCH-HHHhceEEEECCCCccCCCCc
Confidence 4788999999999 999999999999999999999999999 999999887643332 345555666666443 55689
Q ss_pred chhhhHhhhccCCCCHHHHHHHHHHHhhhcC-CCeeeeccccchhchHHHHHHHHhhhhhcCCC------eEEEEecccc
Q psy11993 476 GREMVQLFEKGYGKDPAEIAFRAISHARDMH-IDVVLIDTAGRMQDNEPLMRALAKLVKVNQPD------LLLFVGEALV 548 (630)
Q Consensus 476 v~env~l~~~~~~~d~~~ia~~ai~~a~~~~-~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd------~VLlV~E~~~ 548 (630)
+.+|+.+... .... ...+.++++.+...+ .+..+-..|||++++..++++|. .+|+ .+|++|||++
T Consensus 90 v~e~l~~~~~-~~~~-~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~-----~~p~~~~~~~~lllLDEPts 162 (249)
T 2qi9_C 90 VWHYLTLHQH-DKTR-TELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVL-----QITPQANPAGQLLLLDEPMN 162 (249)
T ss_dssp HHHHHHTTCS-STTC-HHHHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHH-----HHCTTTCTTCCEEEESSTTT
T ss_pred HHHHHHHhhc-cCCc-HHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHH-----cCCCcCCCCCeEEEEECCcc
Confidence 9999987532 1122 333445555544322 24456678999999999999999 6774 1777999999
Q ss_pred CccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcccCCcCccHHHHHHHHHHhCCcEEEEecCCCC
Q psy11993 549 GNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGTGQTY 613 (630)
Q Consensus 549 g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK~D~~~~~~G~~ls~~~~~g~PI~fvg~Gq~v 613 (630)
|+|...+. .+.+.+.++... +.+.|++|+- . ..+....--+.++..|+-+
T Consensus 163 ~LD~~~~~-~l~~~l~~l~~~----g~tviivtHd------~----~~~~~~~d~v~~l~~G~i~ 212 (249)
T 2qi9_C 163 SLDVAQQS-ALDKILSALSQQ----GLAIVMSSHD------L----NHTLRHAHRAWLLKGGKML 212 (249)
T ss_dssp TCCHHHHH-HHHHHHHHHHHT----TCEEEEECSC------H----HHHHHHCSEEEEEETTEEE
T ss_pred cCCHHHHH-HHHHHHHHHHhC----CCEEEEEeCC------H----HHHHHhCCEEEEEECCEEE
Confidence 99987754 444556655421 5677888871 1 2222223346667666543
No 42
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=99.68 E-value=6.4e-18 Score=180.28 Aligned_cols=170 Identities=14% Similarity=0.082 Sum_probs=123.0
Q ss_pred hhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCC-----ccHHHHHHHHHhhhcccCC-C
Q psy11993 398 ILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFR-----AGAVEQLRTHVRHLCSLHP-A 471 (630)
Q Consensus 398 iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R-----~ga~eQLr~~~~~l~~~~~-~ 471 (630)
+|++++|.+.+| ++++|+|||||||||++++||+++.++.|+|.+.+.|... ... .+....++.+... +
T Consensus 20 vl~~vsl~i~~G--e~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~---~~r~ig~v~Q~~~l~ 94 (353)
T 1oxx_K 20 ALDNVNINIENG--ERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPP---EDRKIGMVFQTWALY 94 (353)
T ss_dssp EEEEEEEEECTT--CEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCG---GGSCEEEEETTSCCC
T ss_pred eEeceEEEECCC--CEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCCh---hhCCEEEEeCCCccC
Confidence 789999999999 9999999999999999999999999999999999877643 111 1233445555433 6
Q ss_pred cCCcchhhhHhhhccCCCCHHHH---HHHHHHHhhhcC-CCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccc
Q psy11993 472 AKHGGREMVQLFEKGYGKDPAEI---AFRAISHARDMH-IDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEAL 547 (630)
Q Consensus 472 ~~~tv~env~l~~~~~~~d~~~i---a~~ai~~a~~~~-~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~ 547 (630)
+.+|+.+|+.+....++....+. +.++++.+...+ .+..+-..|||++|+..++++|. .+| .+|++|||+
T Consensus 95 ~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGGq~QRvalAraL~-----~~P-~lLLLDEP~ 168 (353)
T 1oxx_K 95 PNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALV-----KDP-SLLLLDEPF 168 (353)
T ss_dssp TTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHT-----TCC-SEEEEESTT
T ss_pred CCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHH-----hCC-CEEEEECCc
Confidence 67899999988655444443332 344444444332 24456678999999999999999 888 566699999
Q ss_pred cCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 548 VGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 548 ~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
+++|...+. .+.+.+.++.. ..+++.|++|+
T Consensus 169 s~LD~~~r~-~l~~~l~~l~~---~~g~tvi~vTH 199 (353)
T 1oxx_K 169 SNLDARMRD-SARALVKEVQS---RLGVTLLVVSH 199 (353)
T ss_dssp TTSCGGGHH-HHHHHHHHHHH---HHCCEEEEEES
T ss_pred ccCCHHHHH-HHHHHHHHHHH---hcCCEEEEEeC
Confidence 999976543 33334444321 12578888887
No 43
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=99.68 E-value=4.5e-17 Score=167.68 Aligned_cols=172 Identities=21% Similarity=0.122 Sum_probs=122.2
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccCCCcCCcc
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHPAAKHGG 476 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~~~~~tv 476 (630)
.+|++|+|.+.+| ++++|+|||||||||+++.|++++.|..|+|.+.+.|...... ..++....++.+.......|+
T Consensus 33 ~vl~~vsl~i~~G--e~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~-~~~~~~i~~v~Q~~~l~~~tv 109 (271)
T 2ixe_A 33 QVLQGLTFTLYPG--KVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDH-HYLHTQVAAVGQEPLLFGRSF 109 (271)
T ss_dssp CCEEEEEEEECTT--CEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCH-HHHHHHEEEECSSCCCCSSBH
T ss_pred eeeEeeEEEECCC--CEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCH-HHHhccEEEEecCCccccccH
Confidence 4899999999999 9999999999999999999999999999999999988744332 345555666666554445799
Q ss_pred hhhhHhhhccCCCCHHHHH--------HHHHHHh--hhcC-CCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEec
Q psy11993 477 REMVQLFEKGYGKDPAEIA--------FRAISHA--RDMH-IDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGE 545 (630)
Q Consensus 477 ~env~l~~~~~~~d~~~ia--------~~ai~~a--~~~~-~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E 545 (630)
.+|+.+...... ....+. .+.++.+ .... .+......|||++++..++++|. .+| .+|++||
T Consensus 110 ~enl~~~~~~~~-~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAraL~-----~~p-~lllLDE 182 (271)
T 2ixe_A 110 RENIAYGLTRTP-TMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALI-----RKP-RLLILDN 182 (271)
T ss_dssp HHHHHTTCSSCC-CHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHHHT-----TCC-SEEEEES
T ss_pred HHHHhhhcccCC-hHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHHHh-----cCC-CEEEEEC
Confidence 999987543222 211110 1112211 1111 13335578999999999999999 888 5666999
Q ss_pred cccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 546 ALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 546 ~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
|++++|...+. .+.+.+.++.. ..+.+.|++|+
T Consensus 183 Pts~LD~~~~~-~i~~~l~~~~~---~~g~tviivtH 215 (271)
T 2ixe_A 183 ATSALDAGNQL-RVQRLLYESPE---WASRTVLLITQ 215 (271)
T ss_dssp TTTTCCHHHHH-HHHHHHHHCTT---TTTSEEEEECS
T ss_pred CccCCCHHHHH-HHHHHHHHHHh---hcCCEEEEEeC
Confidence 99999988754 44455655532 12577888887
No 44
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=99.65 E-value=2.7e-16 Score=161.51 Aligned_cols=173 Identities=16% Similarity=0.062 Sum_probs=119.6
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHH--HhcCCeEEEeecccCCccHHHHHHHHHhhhcccCC-CcC
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWL--IENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHP-AAK 473 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l--~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~-~~~ 473 (630)
.+|++++|.+.+| ++++|+|||||||||+++.|++++ .+..|+|.+.+.|+......+..+....++.+... ++.
T Consensus 34 ~vl~~vsl~i~~G--e~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~Q~~~l~~~ 111 (267)
T 2zu0_C 34 AILRGLSLDVHPG--EVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAGEGIFMAFQYPVEIPG 111 (267)
T ss_dssp EEEEEEEEEECTT--CEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHHHHTEEEECSSCCCCTT
T ss_pred EEEEeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHhhCCEEEEccCcccccc
Confidence 5899999999999 999999999999999999999984 57889999998887443322221222334444332 566
Q ss_pred CcchhhhHhhhc-c---CC---CCHHH---HHHHHHHHhhhc-C-CCeeee-ccccchhchHHHHHHHHhhhhhcCCCeE
Q psy11993 474 HGGREMVQLFEK-G---YG---KDPAE---IAFRAISHARDM-H-IDVVLI-DTAGRMQDNEPLMRALAKLVKVNQPDLL 540 (630)
Q Consensus 474 ~tv~env~l~~~-~---~~---~d~~~---ia~~ai~~a~~~-~-~D~vlI-DTaGr~~~~~~L~~aL~kl~~~~~Pd~V 540 (630)
+|+.+|+.+... . ++ ....+ .+.++++.+... . .+..+- ..|||++++..++++|. .+| .+
T Consensus 112 ~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~QRv~iAraL~-----~~p-~l 185 (267)
T 2zu0_C 112 VSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAV-----LEP-EL 185 (267)
T ss_dssp CBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTTTTCCHHHHHHHHHHHHHH-----HCC-SE
T ss_pred ccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHH-----hCC-CE
Confidence 889998865321 0 11 12222 233444444432 1 133343 49999999999999999 888 56
Q ss_pred EEEeccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 541 LFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 541 LlV~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
|++|||++|+|...+. .+.+.+.++.. .+.+.|++|+
T Consensus 186 LlLDEPts~LD~~~~~-~l~~~l~~l~~----~g~tviivtH 222 (267)
T 2zu0_C 186 CILDESDSGLDIDALK-VVADGVNSLRD----GKRSFIIVTH 222 (267)
T ss_dssp EEEESTTTTCCHHHHH-HHHHHHHTTCC----SSCEEEEECS
T ss_pred EEEeCCCCCCCHHHHH-HHHHHHHHHHh----cCCEEEEEee
Confidence 6699999999987764 34456665532 2577888888
No 45
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=99.65 E-value=5.9e-17 Score=167.52 Aligned_cols=172 Identities=18% Similarity=0.099 Sum_probs=118.9
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccC--CccHHHHHHHHHhhhcccCC---C
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTF--RAGAVEQLRTHVRHLCSLHP---A 471 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~--R~ga~eQLr~~~~~l~~~~~---~ 471 (630)
.+|++|+|.+.+| ++++|+|||||||||+++.|++++.|..|+|.+.+.+.. .... .+++....++.+... .
T Consensus 35 ~vL~~isl~i~~G--e~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~-~~~~~~i~~v~Q~~~~~~~ 111 (279)
T 2ihy_A 35 TILKKISWQIAKG--DKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSA-ETVRQHIGFVSHSLLEKFQ 111 (279)
T ss_dssp EEEEEEEEEEETT--CEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCH-HHHHTTEEEECHHHHTTSC
T ss_pred EEEEeeeEEEcCC--CEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCH-HHHcCcEEEEEcCcccccC
Confidence 4899999999999 999999999999999999999999999999999998864 2222 234444445544321 2
Q ss_pred cCCcchhhhHhhhcc----CC-CCH--HHHHHHHHHHhhhcC-CCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEE
Q psy11993 472 AKHGGREMVQLFEKG----YG-KDP--AEIAFRAISHARDMH-IDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFV 543 (630)
Q Consensus 472 ~~~tv~env~l~~~~----~~-~d~--~~ia~~ai~~a~~~~-~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV 543 (630)
..+|+.+|+.+.... ++ ... ...+.++++.+.... .+..+-..|||++++..++++|. .+| .+|++
T Consensus 112 ~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqRv~lAraL~-----~~p-~lLlL 185 (279)
T 2ihy_A 112 EGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIGYLSTGEKQRVMIARALM-----GQP-QVLIL 185 (279)
T ss_dssp TTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHH-----TCC-SEEEE
T ss_pred CCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHh-----CCC-CEEEE
Confidence 246999999764211 11 111 122334444443322 24456788999999999999999 888 56669
Q ss_pred eccccCccHHHHHHHHHHHHhhcccCCCCCCeeE--EEEcc
Q psy11993 544 GEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDG--IVLTK 582 (630)
Q Consensus 544 ~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~g--IIlTK 582 (630)
|||++|+|...+. .+.+.+.++... +.+. |++|+
T Consensus 186 DEPts~LD~~~~~-~l~~~l~~l~~~----g~tv~~iivtH 221 (279)
T 2ihy_A 186 DEPAAGLDFIARE-SLLSILDSLSDS----YPTLAMIYVTH 221 (279)
T ss_dssp ESTTTTCCHHHHH-HHHHHHHHHHHH----CTTCEEEEEES
T ss_pred eCCccccCHHHHH-HHHHHHHHHHHC----CCEEEEEEEec
Confidence 9999999987664 344455555321 3444 77777
No 46
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=99.65 E-value=7.7e-17 Score=164.91 Aligned_cols=167 Identities=15% Similarity=0.108 Sum_probs=119.3
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccCCCcCCcc
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHPAAKHGG 476 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~~~~~tv 476 (630)
.+|++++|.+.+| ++++|+|||||||||+++.|++++.+ .|+|.+.+.|..... ..+++....++.+.+.....|+
T Consensus 34 ~vl~~vsl~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~I~i~g~~i~~~~-~~~~~~~i~~v~Q~~~l~~~tv 109 (260)
T 2ghi_A 34 RTLKSINFFIPSG--TTCALVGHTGSGKSTIAKLLYRFYDA-EGDIKIGGKNVNKYN-RNSIRSIIGIVPQDTILFNETI 109 (260)
T ss_dssp CSEEEEEEEECTT--CEEEEECSTTSSHHHHHHHHTTSSCC-EEEEEETTEEGGGBC-HHHHHTTEEEECSSCCCCSEEH
T ss_pred ceeEeeEEEECCC--CEEEEECCCCCCHHHHHHHHhccCCC-CeEEEECCEEhhhcC-HHHHhccEEEEcCCCcccccCH
Confidence 4899999999999 99999999999999999999999876 799999988874433 2345555566666554445799
Q ss_pred hhhhHhhhccCCCCHHHHHHHHHHHhhhc--------CCC----eeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEe
Q psy11993 477 REMVQLFEKGYGKDPAEIAFRAISHARDM--------HID----VVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVG 544 (630)
Q Consensus 477 ~env~l~~~~~~~d~~~ia~~ai~~a~~~--------~~D----~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~ 544 (630)
++|+.+... ...... ..++++.+... +++ ......|||++++..++++|. .+| .+|++|
T Consensus 110 ~enl~~~~~--~~~~~~-~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~-----~~p-~lllLD 180 (260)
T 2ghi_A 110 KYNILYGKL--DATDEE-VIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLL-----KDP-KIVIFD 180 (260)
T ss_dssp HHHHHTTCT--TCCHHH-HHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHH-----HCC-SEEEEE
T ss_pred HHHHhccCC--CCCHHH-HHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHH-----cCC-CEEEEE
Confidence 999987431 122222 22333222110 111 123578999999999999999 888 566699
Q ss_pred ccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 545 EALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 545 E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
||++++|...+ ..+.+.+.++.. +.+.|++|+
T Consensus 181 EPts~LD~~~~-~~i~~~l~~l~~-----~~tviivtH 212 (260)
T 2ghi_A 181 EATSSLDSKTE-YLFQKAVEDLRK-----NRTLIIIAH 212 (260)
T ss_dssp CCCCTTCHHHH-HHHHHHHHHHTT-----TSEEEEECS
T ss_pred CccccCCHHHH-HHHHHHHHHhcC-----CCEEEEEcC
Confidence 99999998775 345556665532 467888888
No 47
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=99.64 E-value=6.4e-17 Score=165.88 Aligned_cols=162 Identities=19% Similarity=0.160 Sum_probs=118.6
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHh-hhcccCCCcCCc
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVR-HLCSLHPAAKHG 475 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~-~l~~~~~~~~~t 475 (630)
.+|++++|.+. | ++++|+|||||||||+++.|++++ |..|+|.+.+.+..+. .. +.... ++.+.... .+|
T Consensus 19 ~il~~vsl~i~-G--e~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~---~~-~~~i~~~v~Q~~~l-~~t 89 (263)
T 2pjz_A 19 FSLENINLEVN-G--EKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKI---RN-YIRYSTNLPEAYEI-GVT 89 (263)
T ss_dssp EEEEEEEEEEC-S--SEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGC---SC-CTTEEECCGGGSCT-TSB
T ss_pred eeEEeeeEEEC-C--EEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcch---HH-hhheEEEeCCCCcc-CCc
Confidence 47899999999 9 999999999999999999999999 9999999988776432 11 23344 55554445 789
Q ss_pred chhhhHhhhccCCCCHHHHHHHHHHHhhhc-C-CCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCccHH
Q psy11993 476 GREMVQLFEKGYGKDPAEIAFRAISHARDM-H-IDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAV 553 (630)
Q Consensus 476 v~env~l~~~~~~~d~~~ia~~ai~~a~~~-~-~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~Dav 553 (630)
+.+|+.++...+..+. ..+.++++.+... . .+..+-..||+++++..++++|. .+| .+|++|||++++|..
T Consensus 90 v~enl~~~~~~~~~~~-~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAraL~-----~~p-~lllLDEPts~LD~~ 162 (263)
T 2pjz_A 90 VNDIVYLYEELKGLDR-DLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALA-----SQP-EIVGLDEPFENVDAA 162 (263)
T ss_dssp HHHHHHHHHHHTCCCH-HHHHHHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHHHH-----TCC-SEEEEECTTTTCCHH
T ss_pred HHHHHHHhhhhcchHH-HHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHH-----hCC-CEEEEECCccccCHH
Confidence 9999988654333222 3344455544332 2 23345678999999999999999 888 566699999999987
Q ss_pred HHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 554 DQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 554 ~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
.+. .+.+.+.++. . +.|++|+
T Consensus 163 ~~~-~l~~~L~~~~------~-tviivtH 183 (263)
T 2pjz_A 163 RRH-VISRYIKEYG------K-EGILVTH 183 (263)
T ss_dssp HHH-HHHHHHHHSC------S-EEEEEES
T ss_pred HHH-HHHHHHHHhc------C-cEEEEEc
Confidence 654 3445565543 2 6777887
No 48
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=99.64 E-value=2.4e-17 Score=166.87 Aligned_cols=189 Identities=17% Similarity=0.167 Sum_probs=128.5
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccCCCcCCcc
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHPAAKHGG 476 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~~~~~tv 476 (630)
.+|++++|.+.+| ++++|+|||||||||+++.|++++.+..|+|.+.+.|...... .+++....++.+.......|+
T Consensus 16 ~vl~~vsl~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~-~~~~~~i~~v~q~~~l~~~tv 92 (243)
T 1mv5_A 16 QILRDISFEAQPN--SIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISL-ENWRSQIGFVSQDSAIMAGTI 92 (243)
T ss_dssp CSEEEEEEEECTT--EEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSC-SCCTTTCCEECCSSCCCCEEH
T ss_pred ceEEEeEEEEcCC--CEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCH-HHHHhhEEEEcCCCccccccH
Confidence 4799999999999 9999999999999999999999999999999999887643221 123334555655544444699
Q ss_pred hhhhHhhhccCCCCHHHHHHHHHHHhhhcCC-C-------e----eeeccccchhchHHHHHHHHhhhhhcCCCeEEEEe
Q psy11993 477 REMVQLFEKGYGKDPAEIAFRAISHARDMHI-D-------V----VLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVG 544 (630)
Q Consensus 477 ~env~l~~~~~~~d~~~ia~~ai~~a~~~~~-D-------~----vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~ 544 (630)
.+|+.+... ...+. ..+.++++.+...++ + . ..-..|||++++..++++|. .+| .+|++|
T Consensus 93 ~enl~~~~~-~~~~~-~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~-----~~p-~lllLD 164 (243)
T 1mv5_A 93 RENLTYGLE-GDYTD-EDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFL-----RNP-KILMLD 164 (243)
T ss_dssp HHHTTSCTT-SCSCH-HHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHH-----HCC-SEEEEE
T ss_pred HHHHhhhcc-CCCCH-HHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHh-----cCC-CEEEEE
Confidence 999987521 12222 223344444433221 1 1 13468999999999999999 888 566699
Q ss_pred ccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcccCCcCccHHHHHHHHHHhCCcEEEEecCCCC
Q psy11993 545 EALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGTGQTY 613 (630)
Q Consensus 545 E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK~D~~~~~~G~~ls~~~~~g~PI~fvg~Gq~v 613 (630)
||++++|...+. .+.+.+.++.. +.+.|++|+ | ... +.. .--|.++..|+-+
T Consensus 165 EPts~LD~~~~~-~i~~~l~~~~~-----~~tvi~vtH-~-----~~~----~~~-~d~v~~l~~G~i~ 216 (243)
T 1mv5_A 165 EATASLDSESES-MVQKALDSLMK-----GRTTLVIAH-R-----LST----IVD-ADKIYFIEKGQIT 216 (243)
T ss_dssp CCSCSSCSSSCC-HHHHHHHHHHT-----TSEEEEECC-S-----HHH----HHH-CSEEEEEETTEEC
T ss_pred CCcccCCHHHHH-HHHHHHHHhcC-----CCEEEEEeC-C-----hHH----HHh-CCEEEEEECCEEE
Confidence 999999975543 23344444431 567888887 1 111 112 3457888888754
No 49
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=99.63 E-value=9.3e-17 Score=163.74 Aligned_cols=179 Identities=13% Similarity=0.092 Sum_probs=123.4
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccCC-CcCCc
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHP-AAKHG 475 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~-~~~~t 475 (630)
.+|++++|.+.+| ++++|+|||||||||+++.|++++.|..|+|.+ + ....++.+... ++.+|
T Consensus 19 ~vl~~isl~i~~G--e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~------~--------~~i~~v~q~~~~~~~~t 82 (253)
T 2nq2_C 19 FLFQQLNFDLNKG--DILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEV------Y--------QSIGFVPQFFSSPFAYS 82 (253)
T ss_dssp EEEEEEEEEEETT--CEEEEECCSSSSHHHHHHHHTTSSCCSEEEEEE------C--------SCEEEECSCCCCSSCCB
T ss_pred eEEEEEEEEECCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEE------e--------ccEEEEcCCCccCCCCC
Confidence 4799999999999 999999999999999999999999999999982 1 12334444333 45789
Q ss_pred chhhhHhhhccC-C----CCH--HHHHHHHHHHhhhcC-CCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccc
Q psy11993 476 GREMVQLFEKGY-G----KDP--AEIAFRAISHARDMH-IDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEAL 547 (630)
Q Consensus 476 v~env~l~~~~~-~----~d~--~~ia~~ai~~a~~~~-~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~ 547 (630)
+.+|+.+....+ + ... ...+.++++.+...+ .+..+-..|||++++..++++|. .+| .+|++|||+
T Consensus 83 v~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~-----~~p-~lllLDEPt 156 (253)
T 2nq2_C 83 VLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIA-----SEC-KLILLDEPT 156 (253)
T ss_dssp HHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHH-----TTC-SEEEESSSS
T ss_pred HHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCChhhCCHHHHHHHHHHHHHH-----cCC-CEEEEeCCc
Confidence 999998764221 1 122 122344554443322 24446788999999999999999 888 566699999
Q ss_pred cCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcccCCcCccHHHHHHHHHHhCCcEEEEecCC
Q psy11993 548 VGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGTGQ 611 (630)
Q Consensus 548 ~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK~D~~~~~~G~~ls~~~~~g~PI~fvg~Gq 611 (630)
+|+|...+. .+.+.+.++... .+.+.|++|+- . ..+....--|.++..|+
T Consensus 157 s~LD~~~~~-~l~~~l~~l~~~---~g~tvi~vtHd------~----~~~~~~~d~v~~l~~G~ 206 (253)
T 2nq2_C 157 SALDLANQD-IVLSLLIDLAQS---QNMTVVFTTHQ------P----NQVVAIANKTLLLNKQN 206 (253)
T ss_dssp TTSCHHHHH-HHHHHHHHHHHT---SCCEEEEEESC------H----HHHHHHCSEEEEEETTE
T ss_pred ccCCHHHHH-HHHHHHHHHHHh---cCCEEEEEecC------H----HHHHHhCCEEEEEeCCe
Confidence 999987754 344455555421 25677888871 1 11222223577777776
No 50
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=99.63 E-value=1.1e-16 Score=172.74 Aligned_cols=167 Identities=15% Similarity=0.076 Sum_probs=120.6
Q ss_pred hhhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccCCCcCCc
Q psy11993 396 VDILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHPAAKHG 475 (630)
Q Consensus 396 ~~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~~~~~t 475 (630)
..+|++|+|.+.+| ++++|+|||||||||++++|++++. ..|+|.+.+.|+...... .++....++.+....+.+|
T Consensus 34 ~~~L~~vsl~i~~G--e~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i~G~~i~~~~~~-~~rr~ig~v~Q~~~lf~~t 109 (390)
T 3gd7_A 34 NAILENISFSISPG--QRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITLE-QWRKAFGVIPQKVFIFSGT 109 (390)
T ss_dssp CCSEEEEEEEECTT--CEEEEEESTTSSHHHHHHHHHTCSE-EEEEEEESSCBTTSSCHH-HHHHTEEEESCCCCCCSEE
T ss_pred eEEeeceeEEEcCC--CEEEEECCCCChHHHHHHHHhCCCC-CCeEEEECCEECCcCChH-HHhCCEEEEcCCcccCccC
Confidence 45899999999999 9999999999999999999999987 889999999998655433 4455566666655555679
Q ss_pred chhhhHhhhccCCCCHHHHHHHHHHHhhhcC--------CCeeeec----cccchhchHHHHHHHHhhhhhcCCCeEEEE
Q psy11993 476 GREMVQLFEKGYGKDPAEIAFRAISHARDMH--------IDVVLID----TAGRMQDNEPLMRALAKLVKVNQPDLLLFV 543 (630)
Q Consensus 476 v~env~l~~~~~~~d~~~ia~~ai~~a~~~~--------~D~vlID----TaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV 543 (630)
+++|+.++.. ... ....++++.+...+ ++..+.+ .|||++|+..|+++|. .+| .+|++
T Consensus 110 v~enl~~~~~---~~~-~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~-----~~P-~lLLL 179 (390)
T 3gd7_A 110 FRKNLDPNAA---HSD-QEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVL-----SKA-KILLL 179 (390)
T ss_dssp HHHHHCTTCC---SCH-HHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHH-----TTC-CEEEE
T ss_pred HHHHhhhccc---cCH-HHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHHh-----cCC-CEEEE
Confidence 9999975432 122 22334444332211 1111111 7999999999999999 888 56669
Q ss_pred eccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 544 GEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 544 ~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
|||++++|...+.. +...+.++. .+.+.|++|+
T Consensus 180 DEPts~LD~~~~~~-l~~~l~~~~-----~~~tvi~vtH 212 (390)
T 3gd7_A 180 DEPSAHLDPVTYQI-IRRTLKQAF-----ADCTVILCEA 212 (390)
T ss_dssp ESHHHHSCHHHHHH-HHHHHHTTT-----TTSCEEEECS
T ss_pred eCCccCCCHHHHHH-HHHHHHHHh-----CCCEEEEEEc
Confidence 99999999876543 445555432 2567788887
No 51
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=99.63 E-value=6.7e-17 Score=163.56 Aligned_cols=190 Identities=13% Similarity=0.027 Sum_probs=127.0
Q ss_pred hhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccCC-CcCCcc
Q psy11993 398 ILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHP-AAKHGG 476 (630)
Q Consensus 398 iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~-~~~~tv 476 (630)
+|++++|.+.+ ++++|+|||||||||+++.|++++.|..|+|.+.+.+...... .+....++.+... ++.+|+
T Consensus 14 ~l~~isl~i~~---e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~---~~~~i~~v~q~~~l~~~ltv 87 (240)
T 2onk_A 14 FRLNVDFEMGR---DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPP---ERRGIGFVPQDYALFPHLSV 87 (240)
T ss_dssp EEEEEEEEECS---SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCT---TTSCCBCCCSSCCCCTTSCH
T ss_pred EEeeeEEEECC---EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCch---hhCcEEEEcCCCccCCCCcH
Confidence 48889998864 6999999999999999999999999999999999887643211 1223344444333 556899
Q ss_pred hhhhHhhhccCCCCH-HHHHHHHHHHhhhcCC-CeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCccHHH
Q psy11993 477 REMVQLFEKGYGKDP-AEIAFRAISHARDMHI-DVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVD 554 (630)
Q Consensus 477 ~env~l~~~~~~~d~-~~ia~~ai~~a~~~~~-D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~Dav~ 554 (630)
.+|+.+....++... .+.+.++++.+...++ +..+-..|||++++..++++|. .+|+ +|++|||++|+|...
T Consensus 88 ~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~-----~~p~-lllLDEPts~LD~~~ 161 (240)
T 2onk_A 88 YRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALV-----IQPR-LLLLDEPLSAVDLKT 161 (240)
T ss_dssp HHHHHTTCTTSCHHHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHT-----TCCS-SBEEESTTSSCCHHH
T ss_pred HHHHHHHHHHcCCchHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHH-----cCCC-EEEEeCCcccCCHHH
Confidence 999987543322111 2223344444433322 4456788999999999999999 8884 566999999999876
Q ss_pred HHHHHHHHHhhcccCCCCCCeeEEEEcccCCcCccHHHHHHHHHHhCCcEEEEecCCCC
Q psy11993 555 QLVKFNNAMADHSLSDNPHLIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGTGQTY 613 (630)
Q Consensus 555 ql~~f~~~l~~~~~~~~~~~i~gIIlTK~D~~~~~~G~~ls~~~~~g~PI~fvg~Gq~v 613 (630)
+. .+.+.+.++... .+.+.|++|+- ... +....--|.++..|+-+
T Consensus 162 ~~-~~~~~l~~l~~~---~g~tvi~vtHd------~~~----~~~~~d~i~~l~~G~i~ 206 (240)
T 2onk_A 162 KG-VLMEELRFVQRE---FDVPILHVTHD------LIE----AAMLADEVAVMLNGRIV 206 (240)
T ss_dssp HH-HHHHHHHHHHHH---HTCCEEEEESC------HHH----HHHHCSEEEEEETTEEE
T ss_pred HH-HHHHHHHHHHHh---cCCEEEEEeCC------HHH----HHHhCCEEEEEECCEEE
Confidence 54 344455554321 14677888871 111 22223356677766543
No 52
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=99.61 E-value=2.1e-16 Score=159.44 Aligned_cols=160 Identities=15% Similarity=0.046 Sum_probs=110.9
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccCCCcCCcc
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHPAAKHGG 476 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~~~~~tv 476 (630)
.+|++++|.+.+| ++++|+|||||||||+++.|++++.|..|+|.+.+ + ..++.+.+.++.+|+
T Consensus 19 ~vl~~vsl~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g----~----------i~~v~Q~~~~~~~tv 82 (237)
T 2cbz_A 19 PTLNGITFSIPEG--ALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKG----S----------VAYVPQQAWIQNDSL 82 (237)
T ss_dssp CSEEEEEEEECTT--CEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECS----C----------EEEECSSCCCCSEEH
T ss_pred ceeeeeEEEECCC--CEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC----E----------EEEEcCCCcCCCcCH
Confidence 4799999999999 99999999999999999999999999999999876 1 344455444557899
Q ss_pred hhhhHhhhccCCCCHHHHHHHHHH---HhhhcC------CCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccc
Q psy11993 477 REMVQLFEKGYGKDPAEIAFRAIS---HARDMH------IDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEAL 547 (630)
Q Consensus 477 ~env~l~~~~~~~d~~~ia~~ai~---~a~~~~------~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~ 547 (630)
.+|+.+.... .......+.++.. .+.... .+......|||++++..++++|. .+| .+|++|||+
T Consensus 83 ~enl~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~-----~~p-~lllLDEPt 155 (237)
T 2cbz_A 83 RENILFGCQL-EEPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVY-----SNA-DIYLFDDPL 155 (237)
T ss_dssp HHHHHTTSCC-CTTHHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHH-----HCC-SEEEEESTT
T ss_pred HHHhhCcccc-CHHHHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHh-----cCC-CEEEEeCcc
Confidence 9999875422 1222211112111 111100 12234578999999999999999 888 566699999
Q ss_pred cCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 548 VGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 548 ~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
+++|...+... .+.+..... . ..+.+.|++|+
T Consensus 156 s~LD~~~~~~i-~~~l~~~~~-~-~~~~tviivtH 187 (237)
T 2cbz_A 156 SAVDAHVGKHI-FENVIGPKG-M-LKNKTRILVTH 187 (237)
T ss_dssp TTSCHHHHHHH-HHHTTSTTS-T-TTTSEEEEECS
T ss_pred cccCHHHHHHH-HHHHHHHHh-h-cCCCEEEEEec
Confidence 99998765443 334421111 0 12577888888
No 53
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=99.61 E-value=4.2e-16 Score=177.01 Aligned_cols=170 Identities=18% Similarity=0.138 Sum_probs=127.4
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccCCCcCCcc
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHPAAKHGG 476 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~~~~~tv 476 (630)
.+|++++|++++| ++++|+|||||||||+++.|++++.|..|+|.+.+.|..... ...+|....++.+.+.....|+
T Consensus 358 ~vl~~isl~i~~G--~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~i~~~~-~~~~~~~i~~v~Q~~~l~~~tv 434 (595)
T 2yl4_A 358 PIFQDFSLSIPSG--SVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLN-PVWLRSKIGTVSQEPILFSCSI 434 (595)
T ss_dssp EEEEEEEEEECTT--CEEEEECCTTSSSTHHHHHHTTSSCCSEEEEEETTEETTTBC-HHHHHHSEEEECSSCCCCSSBH
T ss_pred ccccceEEEEcCC--CEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCEEhhhCC-HHHHHhceEEEccCCcccCCCH
Confidence 4899999999999 999999999999999999999999999999999999885543 3456666777777655556799
Q ss_pred hhhhHhhhccC-CCCHHHHHHHHHHHhhh--------cCCCeee----eccccchhchHHHHHHHHhhhhhcCCCeEEEE
Q psy11993 477 REMVQLFEKGY-GKDPAEIAFRAISHARD--------MHIDVVL----IDTAGRMQDNEPLMRALAKLVKVNQPDLLLFV 543 (630)
Q Consensus 477 ~env~l~~~~~-~~d~~~ia~~ai~~a~~--------~~~D~vl----IDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV 543 (630)
++|+.+....+ ..+. +...++++.+.. .++|..+ ...|||++|+..++|+|. .+| .++++
T Consensus 435 ~eni~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~~~~LSgGq~qrv~iAral~-----~~p-~illl 507 (595)
T 2yl4_A 435 AENIAYGADDPSSVTA-EEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARALL-----KNP-KILLL 507 (595)
T ss_dssp HHHHHTTSSSTTTSCH-HHHHHHHHHTTCHHHHHTSSSGGGCBCSSSSCCCCHHHHHHHHHHHHHH-----HCC-SEEEE
T ss_pred HHHHhhcCCCccccCH-HHHHHHHHHcCCHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHH-----cCC-CEEEE
Confidence 99998754321 1232 223344443321 1344444 578999999999999999 788 56679
Q ss_pred eccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 544 GEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 544 ~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
|||++++|...+. .+.+.+.++.. +.+.|++|+
T Consensus 508 DEpts~LD~~~~~-~i~~~l~~~~~-----~~tvi~itH 540 (595)
T 2yl4_A 508 DEATSALDAENEY-LVQEALDRLMD-----GRTVLVIAH 540 (595)
T ss_dssp ECCCSSCCHHHHH-HHHHHHHHHHT-----TSEEEEECC
T ss_pred ECcccCCCHHHHH-HHHHHHHHHhc-----CCEEEEEec
Confidence 9999999988654 44555655532 467888887
No 54
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=99.59 E-value=9.9e-16 Score=173.48 Aligned_cols=170 Identities=16% Similarity=0.116 Sum_probs=125.4
Q ss_pred hhhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccCCCcCCc
Q psy11993 396 VDILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHPAAKHG 475 (630)
Q Consensus 396 ~~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~~~~~t 475 (630)
..+|++++|.+++| ++++|+|||||||||+++.|++++.|+.|+|.+.+.|..... ...+|....++.+.+.....|
T Consensus 356 ~~~l~~i~l~i~~G--~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~-~~~~~~~i~~v~Q~~~l~~~t 432 (582)
T 3b5x_A 356 KPALSHVSFSIPQG--KTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYK-LTNLRRHFALVSQNVHLFNDT 432 (582)
T ss_pred ccccccceEEECCC--CEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEhhhCC-HHHHhcCeEEEcCCCcccccc
Confidence 35899999999999 999999999999999999999999999999999998874433 345666667777765555679
Q ss_pred chhhhHhhhccCCCCHHHHHHHHHHHhhh--------cCCCee----eeccccchhchHHHHHHHHhhhhhcCCCeEEEE
Q psy11993 476 GREMVQLFEKGYGKDPAEIAFRAISHARD--------MHIDVV----LIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFV 543 (630)
Q Consensus 476 v~env~l~~~~~~~d~~~ia~~ai~~a~~--------~~~D~v----lIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV 543 (630)
+++|+.+... ...+. +...++++.+.. .++|.. ....|||++|+..++|+|. .+| .++++
T Consensus 433 v~eni~~~~~-~~~~~-~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iAral~-----~~p-~illl 504 (582)
T 3b5x_A 433 IANNIAYAAE-GEYTR-EQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALL-----RDA-PVLIL 504 (582)
T ss_pred HHHHHhccCC-CCCCH-HHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHHHHHHHH-----cCC-CEEEE
Confidence 9999987531 11222 223334433321 133333 2467999999999999999 788 56779
Q ss_pred eccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 544 GEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 544 ~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
|||++++|...+.. +.+.+.++.. +.+.|++|+
T Consensus 505 DEpts~LD~~~~~~-i~~~l~~~~~-----~~tvi~itH 537 (582)
T 3b5x_A 505 DEATSALDTESERA-IQAALDELQK-----NKTVLVIAH 537 (582)
T ss_pred ECccccCCHHHHHH-HHHHHHHHcC-----CCEEEEEec
Confidence 99999999887644 4555655532 567888887
No 55
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.58 E-value=6.8e-16 Score=175.09 Aligned_cols=169 Identities=17% Similarity=0.150 Sum_probs=126.8
Q ss_pred hhhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccCCCcCCc
Q psy11993 396 VDILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHPAAKHG 475 (630)
Q Consensus 396 ~~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~~~~~t 475 (630)
..+|++++|.+++| ++++|||||||||||+++.|++++.+..|+|.+.+.|..... ...+|....++.+.+.....|
T Consensus 356 ~~~l~~isl~i~~G--e~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i~~~~-~~~~r~~i~~v~Q~~~lf~~t 432 (587)
T 3qf4_A 356 DPVLSGVNFSVKPG--SLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVK-LKDLRGHISAVPQETVLFSGT 432 (587)
T ss_dssp CCSEEEEEEEECTT--CEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBGGGBC-HHHHHHHEEEECSSCCCCSEE
T ss_pred CcceeceEEEEcCC--CEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEEcccCC-HHHHHhheEEECCCCcCcCcc
Confidence 35899999999999 999999999999999999999999999999999999985544 456777778888776666679
Q ss_pred chhhhHhhhccCCCCHHHHHHHHHHHhhh--------cCCCeee----eccccchhchHHHHHHHHhhhhhcCCCeEEEE
Q psy11993 476 GREMVQLFEKGYGKDPAEIAFRAISHARD--------MHIDVVL----IDTAGRMQDNEPLMRALAKLVKVNQPDLLLFV 543 (630)
Q Consensus 476 v~env~l~~~~~~~d~~~ia~~ai~~a~~--------~~~D~vl----IDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV 543 (630)
+++|+.+..... +..++ .++++.+.. .++|..+ ...|||++|+..++|+|. .+| .++++
T Consensus 433 v~eni~~~~~~~--~~~~~-~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~lARal~-----~~p-~illl 503 (587)
T 3qf4_A 433 IKENLKWGREDA--TDDEI-VEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALV-----KKP-KVLIL 503 (587)
T ss_dssp HHHHHTTTCSSC--CHHHH-HHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHHHHHHH-----TCC-SEEEE
T ss_pred HHHHHhccCCCC--CHHHH-HHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHHHHHHH-----cCC-CEEEE
Confidence 999998753222 22222 222222211 1344433 457999999999999999 788 56669
Q ss_pred eccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 544 GEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 544 ~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
|||++++|...+... .+.+.++. .+.+.|++|+
T Consensus 504 DEpts~LD~~~~~~i-~~~l~~~~-----~~~tvi~itH 536 (587)
T 3qf4_A 504 DDCTSSVDPITEKRI-LDGLKRYT-----KGCTTFIITQ 536 (587)
T ss_dssp ESCCTTSCHHHHHHH-HHHHHHHS-----TTCEEEEEES
T ss_pred ECCcccCCHHHHHHH-HHHHHHhC-----CCCEEEEEec
Confidence 999999998876544 34555543 2578889887
No 56
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=99.58 E-value=8.9e-16 Score=154.08 Aligned_cols=175 Identities=15% Similarity=0.128 Sum_probs=116.0
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccCCCcCCcc
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHPAAKHGG 476 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~~~~~tv 476 (630)
.+|++++|.+.+| ++++|+|||||||||+++.|++++.|..|+|.+.+ + ..++.+.+.....|+
T Consensus 22 ~il~~vsl~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g----~----------i~~v~q~~~~~~~tv 85 (229)
T 2pze_A 22 PVLKDINFKIERG--QLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG----R----------ISFCSQFSWIMPGTI 85 (229)
T ss_dssp CSEEEEEEEEETT--CEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECS----C----------EEEECSSCCCCSBCH
T ss_pred eeeeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECC----E----------EEEEecCCcccCCCH
Confidence 5899999999999 99999999999999999999999999999999876 1 334444433334599
Q ss_pred hhhhHhhhccCCCCHHHHHHHHHHHh------hhcC--CCe----eeeccccchhchHHHHHHHHhhhhhcCCCeEEEEe
Q psy11993 477 REMVQLFEKGYGKDPAEIAFRAISHA------RDMH--IDV----VLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVG 544 (630)
Q Consensus 477 ~env~l~~~~~~~d~~~ia~~ai~~a------~~~~--~D~----vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~ 544 (630)
.+|+.+... ..... ...+++.. .... .+. .....|||++++..++++|. .+| .++++|
T Consensus 86 ~enl~~~~~---~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~-----~~p-~lllLD 155 (229)
T 2pze_A 86 KENIIFGVS---YDEYR-YRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVY-----KDA-DLYLLD 155 (229)
T ss_dssp HHHHHTTSC---CCHHH-HHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHH-----SCC-SEEEEE
T ss_pred HHHhhccCC---cChHH-HHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHh-----cCC-CEEEEE
Confidence 999987432 11111 11121111 1100 010 12478999999999999999 888 566699
Q ss_pred ccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcccCCcCccHHHHHHHHHHhCCcEEEEecCCCC
Q psy11993 545 EALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGTGQTY 613 (630)
Q Consensus 545 E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK~D~~~~~~G~~ls~~~~~g~PI~fvg~Gq~v 613 (630)
||++++|...+...++..+..+. .+.+.|++|+- ... +.. .--|.++..|+-+
T Consensus 156 EPts~LD~~~~~~i~~~l~~~~~-----~~~tvi~vtH~------~~~----~~~-~d~v~~l~~G~i~ 208 (229)
T 2pze_A 156 SPFGYLDVLTEKEIFESCVCKLM-----ANKTRILVTSK------MEH----LKK-ADKILILHEGSSY 208 (229)
T ss_dssp STTTTSCHHHHHHHHHHCCCCCT-----TTSEEEEECCC------HHH----HHH-CSEEEEEETTEEE
T ss_pred CcccCCCHHHHHHHHHHHHHHhh-----CCCEEEEEcCC------hHH----HHh-CCEEEEEECCEEE
Confidence 99999998776443321122221 25677888871 111 112 2357777777654
No 57
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=99.57 E-value=1.1e-15 Score=173.07 Aligned_cols=170 Identities=17% Similarity=0.139 Sum_probs=126.1
Q ss_pred hhhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccCCCcCCc
Q psy11993 396 VDILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHPAAKHG 475 (630)
Q Consensus 396 ~~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~~~~~t 475 (630)
..+|++++|.+++| ++++|+|||||||||+++.|++++.|..|+|.+.+.|..... ...+|....++.+.+.....|
T Consensus 356 ~~~l~~v~~~i~~G--~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~-~~~~~~~i~~v~Q~~~l~~~t 432 (582)
T 3b60_A 356 VPALRNINLKIPAG--KTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYT-LASLRNQVALVSQNVHLFNDT 432 (582)
T ss_dssp CCSEEEEEEEECTT--CEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBC-HHHHHHTEEEECSSCCCCSSB
T ss_pred CccccceeEEEcCC--CEEEEECCCCCCHHHHHHHHhhccCCCCCeEEECCEEccccC-HHHHHhhCeEEccCCcCCCCC
Confidence 35899999999999 999999999999999999999999999999999998885443 345677777777766555679
Q ss_pred chhhhHhhhccCCCCHHHHHHHHHHHhhh--------cCCCee----eeccccchhchHHHHHHHHhhhhhcCCCeEEEE
Q psy11993 476 GREMVQLFEKGYGKDPAEIAFRAISHARD--------MHIDVV----LIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFV 543 (630)
Q Consensus 476 v~env~l~~~~~~~d~~~ia~~ai~~a~~--------~~~D~v----lIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV 543 (630)
+++|+.+... ...+..+ ..++++.+.. .++|.. ....|||++|+..++|+|. .+| .++++
T Consensus 433 v~eni~~~~~-~~~~~~~-~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iAral~-----~~p-~illl 504 (582)
T 3b60_A 433 VANNIAYART-EEYSREQ-IEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALL-----RDS-PILIL 504 (582)
T ss_dssp HHHHHHTTTT-SCCCHHH-HHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHH-----HCC-SEEEE
T ss_pred HHHHHhccCC-CCCCHHH-HHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHH-----hCC-CEEEE
Confidence 9999987531 1222222 3334332211 123333 2467999999999999999 788 56679
Q ss_pred eccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 544 GEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 544 ~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
|||++++|...+.. +.+.+.++.. +.+.|++|+
T Consensus 505 DEpts~LD~~~~~~-i~~~l~~~~~-----~~tvi~itH 537 (582)
T 3b60_A 505 DEATSALDTESERA-IQAALDELQK-----NRTSLVIAH 537 (582)
T ss_dssp ETTTSSCCHHHHHH-HHHHHHHHHT-----TSEEEEECS
T ss_pred ECccccCCHHHHHH-HHHHHHHHhC-----CCEEEEEec
Confidence 99999999887644 4455655532 567888888
No 58
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=99.56 E-value=1.1e-15 Score=173.11 Aligned_cols=169 Identities=19% Similarity=0.176 Sum_probs=126.1
Q ss_pred hhhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccCCCcCCc
Q psy11993 396 VDILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHPAAKHG 475 (630)
Q Consensus 396 ~~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~~~~~t 475 (630)
..+|++++|.+++| ++++|||||||||||+++.|++++.|..|+|.+.+.|..... ...+|....++.+.+.....|
T Consensus 354 ~~~l~~isl~i~~G--~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~-~~~~r~~i~~v~Q~~~l~~~t 430 (578)
T 4a82_A 354 APILKDINLSIEKG--ETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFL-TGSLRNQIGLVQQDNILFSDT 430 (578)
T ss_dssp CCSEEEEEEEECTT--CEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSC-HHHHHHTEEEECSSCCCCSSB
T ss_pred CcceeeeEEEECCC--CEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEEhhhCC-HHHHhhheEEEeCCCccCccc
Confidence 35899999999999 999999999999999999999999999999999999985443 346677777787766666679
Q ss_pred chhhhHhhhccCCCCHHHHHHHHHHHhhh--------cCCCeee----eccccchhchHHHHHHHHhhhhhcCCCeEEEE
Q psy11993 476 GREMVQLFEKGYGKDPAEIAFRAISHARD--------MHIDVVL----IDTAGRMQDNEPLMRALAKLVKVNQPDLLLFV 543 (630)
Q Consensus 476 v~env~l~~~~~~~d~~~ia~~ai~~a~~--------~~~D~vl----IDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV 543 (630)
+++|+.+.... .+..+ ..++++.+.. .++|..+ ...|||++|+..++|+|. .+| .++++
T Consensus 431 v~eni~~~~~~--~~~~~-~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~lAral~-----~~p-~illl 501 (578)
T 4a82_A 431 VKENILLGRPT--ATDEE-VVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFL-----NNP-PILIL 501 (578)
T ss_dssp HHHHHGGGCSS--CCHHH-HHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHH-----HCC-SEEEE
T ss_pred HHHHHhcCCCC--CCHHH-HHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHHHHHHHHH-----cCC-CEEEE
Confidence 99999875321 22222 2233332211 1334333 357999999999999999 788 46669
Q ss_pred eccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 544 GEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 544 ~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
|||++++|...+ ..+.+.+.++.. +.+.+++|+
T Consensus 502 DEpts~LD~~~~-~~i~~~l~~~~~-----~~t~i~itH 534 (578)
T 4a82_A 502 DEATSALDLESE-SIIQEALDVLSK-----DRTTLIVAH 534 (578)
T ss_dssp ESTTTTCCHHHH-HHHHHHHHHHTT-----TSEEEEECS
T ss_pred ECccccCCHHHH-HHHHHHHHHHcC-----CCEEEEEec
Confidence 999999998765 445556655532 457788887
No 59
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.56 E-value=2.3e-15 Score=171.13 Aligned_cols=188 Identities=16% Similarity=0.137 Sum_probs=135.1
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccCCCcCCcc
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHPAAKHGG 476 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~~~~~tv 476 (630)
.+|++++|.+++| ++++|+|||||||||+++.|++++.|..|+|.+.+.|..... ...+|....++.+.+.....|+
T Consensus 369 ~~l~~isl~i~~G--~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~-~~~~r~~i~~v~Q~~~lf~~tv 445 (598)
T 3qf4_B 369 PVLKDITFHIKPG--QKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIK-RSSLRSSIGIVLQDTILFSTTV 445 (598)
T ss_dssp CSCCSEEEECCTT--CEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEEGGGSC-HHHHHHHEEEECTTCCCCSSBH
T ss_pred ccccceEEEEcCC--CEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEEhhhCC-HHHHHhceEEEeCCCccccccH
Confidence 5899999999999 999999999999999999999999999999999999985544 4567777788887766667899
Q ss_pred hhhhHhhhccCCCCHHHHHHHHHHHhh------h--cCCCeee----eccccchhchHHHHHHHHhhhhhcCCCeEEEEe
Q psy11993 477 REMVQLFEKGYGKDPAEIAFRAISHAR------D--MHIDVVL----IDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVG 544 (630)
Q Consensus 477 ~env~l~~~~~~~d~~~ia~~ai~~a~------~--~~~D~vl----IDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~ 544 (630)
++|+.+.......+. ..++++.+. . .++|..+ ...|||++|+..++|+|. .+| .++++|
T Consensus 446 ~eni~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAral~-----~~p-~illlD 516 (598)
T 3qf4_B 446 KENLKYGNPGATDEE---IKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFL-----ANP-KILILD 516 (598)
T ss_dssp HHHHHSSSTTCCTTH---HHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHHHH-----TCC-SEEEEC
T ss_pred HHHHhcCCCCCCHHH---HHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHh-----cCC-CEEEEE
Confidence 999987543222222 122221111 0 1233332 357999999999999999 788 566699
Q ss_pred ccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcccCCcCccHHHHHHHHHHhCCcEEEEecCCCC
Q psy11993 545 EALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGTGQTY 613 (630)
Q Consensus 545 E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK~D~~~~~~G~~ls~~~~~g~PI~fvg~Gq~v 613 (630)
||++++|...+... .+.+.++.. +.+.|++|+=- ..+ .. .-.|..+..|+-+
T Consensus 517 Epts~LD~~~~~~i-~~~l~~~~~-----~~t~i~itH~l------~~~----~~-~d~i~~l~~G~i~ 568 (598)
T 3qf4_B 517 EATSNVDTKTEKSI-QAAMWKLME-----GKTSIIIAHRL------NTI----KN-ADLIIVLRDGEIV 568 (598)
T ss_dssp CCCTTCCHHHHHHH-HHHHHHHHT-----TSEEEEESCCT------THH----HH-CSEEEEECSSSEE
T ss_pred CCccCCCHHHHHHH-HHHHHHHcC-----CCEEEEEecCH------HHH----Hc-CCEEEEEECCEEE
Confidence 99999998776443 445554432 57889999821 111 11 2457777777654
No 60
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.53 E-value=6.7e-15 Score=180.73 Aligned_cols=173 Identities=18% Similarity=0.155 Sum_probs=133.7
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccCCCcCCcc
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHPAAKHGG 476 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~~~~~tv 476 (630)
.+|++++|.+++| +.++|||+|||||||+++.|.+++.|..|+|.|.+.|+...+ .+.||.+..+++|.+.....|+
T Consensus 1093 ~VL~~isl~I~~G--e~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~di~~i~-~~~lR~~i~~V~Qdp~LF~gTI 1169 (1321)
T 4f4c_A 1093 EILKGLSFSVEPG--QTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLN-PEHTRSQIAIVSQEPTLFDCSI 1169 (1321)
T ss_dssp CSEEEEEEEECTT--CEEEEECSTTSSTTSHHHHHTTSSCCSSSEEEETTEETTTBC-HHHHHTTEEEECSSCCCCSEEH
T ss_pred ccccceeEEECCC--CEEEEECCCCChHHHHHHHHhcCccCCCCEEEECCEEhhhCC-HHHHHhheEEECCCCEeeCccH
Confidence 5899999999999 999999999999999999999999999999999999996554 5688988888998888888999
Q ss_pred hhhhHhhhccCCCCHHHHHHHHHHHhhh--------cCCCeeeec----cccchhchHHHHHHHHhhhhhcCCCeEEEEe
Q psy11993 477 REMVQLFEKGYGKDPAEIAFRAISHARD--------MHIDVVLID----TAGRMQDNEPLMRALAKLVKVNQPDLLLFVG 544 (630)
Q Consensus 477 ~env~l~~~~~~~d~~~ia~~ai~~a~~--------~~~D~vlID----TaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~ 544 (630)
++||.+.......+..+ ..+|++.+.. .++|..+.+ .|||+.|+..|+|+|. .+| .||++|
T Consensus 1170 reNI~~gld~~~~sd~e-i~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiARAll-----r~~-~ILiLD 1242 (1321)
T 4f4c_A 1170 AENIIYGLDPSSVTMAQ-VEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARALV-----RNP-KILLLD 1242 (1321)
T ss_dssp HHHHSSSSCTTTSCHHH-HHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHHHHHH-----SCC-SEEEEE
T ss_pred HHHHhccCCCCCCCHHH-HHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHHHHHHHHH-----hCC-CEEEEe
Confidence 99997653222223333 3344443321 467877754 6999999999999999 677 577799
Q ss_pred ccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcc-cCC
Q psy11993 545 EALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTK-FDT 585 (630)
Q Consensus 545 E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK-~D~ 585 (630)
|||+++|..... ...+.+++.. .+.+.|++++ +.+
T Consensus 1243 EaTSaLD~~tE~-~Iq~~l~~~~-----~~~TvI~IAHRLsT 1278 (1321)
T 4f4c_A 1243 EATSALDTESEK-VVQEALDRAR-----EGRTCIVIAHRLNT 1278 (1321)
T ss_dssp SCCCSTTSHHHH-HHHHHHTTTS-----SSSEEEEECSSSST
T ss_pred CccccCCHHHHH-HHHHHHHHHc-----CCCEEEEeccCHHH
Confidence 999999977653 3445555432 2567888877 443
No 61
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=99.50 E-value=7.9e-15 Score=152.42 Aligned_cols=154 Identities=16% Similarity=0.083 Sum_probs=104.9
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccCCCcCCcc
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHPAAKHGG 476 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~~~~~tv 476 (630)
.+|++++|.+.+| ++++|+|||||||||+++.|++++.+..|+|.+.+ + ..++.+.......|+
T Consensus 52 ~vl~~isl~i~~G--e~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g----~----------i~~v~Q~~~l~~~tv 115 (290)
T 2bbs_A 52 PVLKDINFKIERG--QLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG----R----------ISFCSQNSWIMPGTI 115 (290)
T ss_dssp CSEEEEEEEECTT--CEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCS----C----------EEEECSSCCCCSSBH
T ss_pred eEEEeeEEEEcCC--CEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECC----E----------EEEEeCCCccCcccH
Confidence 4799999999999 99999999999999999999999999999998865 1 334444433334699
Q ss_pred hhhhHhhhccCCCCHHHHHHHHHHHh------hhcC--C----CeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEe
Q psy11993 477 REMVQLFEKGYGKDPAEIAFRAISHA------RDMH--I----DVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVG 544 (630)
Q Consensus 477 ~env~l~~~~~~~d~~~ia~~ai~~a------~~~~--~----D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~ 544 (630)
.+|+. .. ...... ...+++.. .... + +......|||++++..++++|. .+| .+|++|
T Consensus 116 ~enl~-~~---~~~~~~-~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~-----~~p-~lllLD 184 (290)
T 2bbs_A 116 KENII-GV---SYDEYR-YRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVY-----KDA-DLYLLD 184 (290)
T ss_dssp HHHHH-TT---CCCHHH-HHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHH-----SCC-SEEEEE
T ss_pred HHHhh-Cc---ccchHH-HHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHHH-----CCC-CEEEEE
Confidence 99986 21 111111 11121111 1100 0 1113578999999999999999 888 566699
Q ss_pred ccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 545 EALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 545 E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
||++|+|...+...++..+..+. .+.+.|++|+
T Consensus 185 EPts~LD~~~~~~i~~~ll~~~~-----~~~tviivtH 217 (290)
T 2bbs_A 185 SPFGYLDVLTEKEIFESCVCKLM-----ANKTRILVTS 217 (290)
T ss_dssp STTTTCCHHHHHHHHHHCCCCCT-----TTSEEEEECC
T ss_pred CCcccCCHHHHHHHHHHHHHHhh-----CCCEEEEEec
Confidence 99999998876443321122221 2567888887
No 62
>2vx8_A Nucleoporin-like protein RIP, vesicle-associated membrane protein 7; endocytosis,exocytosis, endocytosis, exocytosis, acetylation, coiled coil; 2.2A {Homo sapiens} PDB: 2dmw_A
Probab=99.50 E-value=3.5e-14 Score=136.10 Aligned_cols=116 Identities=13% Similarity=0.249 Sum_probs=98.8
Q ss_pred CcceEEEeecCceEEEEeccCCCCCCchHHHHHHHhhhccccCCCceeecCeEEEEEEeccccEEEEEEeccccchhcHH
Q psy11993 1 MLDFFTIFSKGGIVLWYFQSASQIFTPSLNALIKSVILQERGGNQVFEHNGLVLKHKLDNEFDLVFVVGFQKILQLSYVD 80 (630)
Q Consensus 1 Mld~~~i~t~gG~vLw~~~~~~~~~~~~in~li~~~~leer~~~~~~~~~~~~l~w~~~n~~~lvfv~~yq~~l~l~y~d 80 (630)
|++.+++|++||+|||+++.....+..+++.+|+.+.. +.+..+|.+++|+++|..+| ||+|++++++.+...+..
T Consensus 44 M~ilYa~VaRG~~VLae~t~~~gnf~~iak~ll~kl~~--~~~r~s~~~~~y~fHyl~~n--gl~yl~I~D~~yp~r~AF 119 (169)
T 2vx8_A 44 MAILFAVVARGTTILAKHAWCGGNFLEVTEQILAKIPS--ENNKLTYSHGNYLFHYICQD--RIVYLCITDDDFERSRAF 119 (169)
T ss_dssp SCCCEEEEEETTEEEEEEESSCBSHHHHHHHHHTTSCS--SCEEEEEEETTEEEEEEEET--TEEEEEEEETTSCHHHHH
T ss_pred CceEEEEEEcCCEEEEEeccCCCCHHHHHHHHHhhCCC--CCCceEEEECCEEEEEEEEC--CEEEEEEEccccchHHHH
Confidence 99999999999999999987656777888888888876 44557899999999999987 999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhhcCCCcceecCccHHHHHHHHHHHHh
Q psy11993 81 KLLDDVHLEFRDKYKNELGSDMHLYDYDFESTYNVLLKEAEEW 123 (630)
Q Consensus 81 ~ll~~~~~~f~~~~~~~l~~~~~~~~~~f~~~f~~~l~~~e~~ 123 (630)
.||++|+.+|...|++.... . ..|.|++.|+..|++.+..
T Consensus 120 ~fLedI~~eF~~~y~~~~~~--a-~pysf~~eF~~~Lk~~~~~ 159 (169)
T 2vx8_A 120 SFLNEVKKRFQTTYGSRAQT--A-LPYAMNSEFSSVLAAQLKH 159 (169)
T ss_dssp HHHHHHHHHHHHHHTTGGGT--C-CTTTTHHHHHHHHSCC---
T ss_pred HHHHHHHHHHHHHhhhhhhc--c-CCcchhHHHHHHHHHHHHH
Confidence 99999999999999875532 1 3678999999998766543
No 63
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.44 E-value=4.7e-14 Score=173.28 Aligned_cols=169 Identities=21% Similarity=0.213 Sum_probs=131.7
Q ss_pred hhhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccCCCcCCc
Q psy11993 396 VDILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHPAAKHG 475 (630)
Q Consensus 396 ~~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~~~~~t 475 (630)
..+|+|++|.+++| +.++||||+||||||+++.|.+++.+..|+|.+.+.|+... ..+.+|....++.|.+.....|
T Consensus 431 ~~vL~~isl~i~~G--~~vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG~~i~~~-~~~~lr~~i~~v~Q~~~Lf~~T 507 (1321)
T 4f4c_A 431 VPILRGMNLRVNAG--QTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDI-NLEFLRKNVAVVSQEPALFNCT 507 (1321)
T ss_dssp SCSEEEEEEEECTT--CEEEEEECSSSCHHHHHHHHTTSSCCSEEEEEETTEETTTS-CHHHHHHHEEEECSSCCCCSEE
T ss_pred CceeeceEEeecCC--cEEEEEecCCCcHHHHHHHhccccccccCcccCCCccchhc-cHHHHhhcccccCCcceeeCCc
Confidence 46899999999999 99999999999999999999999999999999999998444 4568898899999988888899
Q ss_pred chhhhHhhhccCCCCHHHHHHHHHHHhh--------hcCCCeeeec----cccchhchHHHHHHHHhhhhhcCCCeEEEE
Q psy11993 476 GREMVQLFEKGYGKDPAEIAFRAISHAR--------DMHIDVVLID----TAGRMQDNEPLMRALAKLVKVNQPDLLLFV 543 (630)
Q Consensus 476 v~env~l~~~~~~~d~~~ia~~ai~~a~--------~~~~D~vlID----TaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV 543 (630)
+++||.+.... .+..++ .+|++.+. -.++|..+.+ .|||++|+..|+|+|. .+| .++++
T Consensus 508 I~eNI~~g~~~--~~~~~v-~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl~-----~~~-~IliL 578 (1321)
T 4f4c_A 508 IEENISLGKEG--ITREEM-VAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALV-----RNP-KILLL 578 (1321)
T ss_dssp HHHHHHTTCTT--CCHHHH-HHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHHT-----TCC-SEEEE
T ss_pred hhHHHhhhccc--chHHHH-HHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHHHHHHHHHc-----cCC-CEEEE
Confidence 99999875321 233332 23333321 1467777644 6999999999999998 777 56669
Q ss_pred eccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 544 GEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 544 ~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
|||++++|+... ..+.+.+..+.. +.+.|++|+
T Consensus 579 DE~tSaLD~~te-~~i~~~l~~~~~-----~~T~iiiaH 611 (1321)
T 4f4c_A 579 DEATSALDAESE-GIVQQALDKAAK-----GRTTIIIAH 611 (1321)
T ss_dssp ESTTTTSCTTTH-HHHHHHHHHHHT-----TSEEEEECS
T ss_pred ecccccCCHHHH-HHHHHHHHHHhC-----CCEEEEEcc
Confidence 999999998653 455556655432 567788876
No 64
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.43 E-value=5.8e-14 Score=172.00 Aligned_cols=169 Identities=21% Similarity=0.190 Sum_probs=126.0
Q ss_pred hhhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccCCCcCCc
Q psy11993 396 VDILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHPAAKHG 475 (630)
Q Consensus 396 ~~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~~~~~t 475 (630)
..+|++++|.+++| ++++|||||||||||+++.|++++.+..|+|.+.+.|+.... ...+|....++.|.+.....|
T Consensus 403 ~~vL~~isl~i~~G--~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~~i~~~~-~~~~r~~i~~v~Q~~~l~~~t 479 (1284)
T 3g5u_A 403 VQILKGLNLKVKSG--QTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTIN-VRYLREIIGVVSQEPVLFATT 479 (1284)
T ss_dssp CCSEEEEEEEECTT--CEEEEECCSSSSHHHHHHHTTTSSCCSEEEEEETTEEGGGSC-HHHHHHHEEEECSSCCCCSSC
T ss_pred CcceecceEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEHHhCC-HHHHHhheEEEcCCCccCCcc
Confidence 35899999999999 999999999999999999999999999999999999985444 457788888888877666789
Q ss_pred chhhhHhhhccCCCCHHHHHHHHHHHhh------h--cCCCeee----eccccchhchHHHHHHHHhhhhhcCCCeEEEE
Q psy11993 476 GREMVQLFEKGYGKDPAEIAFRAISHAR------D--MHIDVVL----IDTAGRMQDNEPLMRALAKLVKVNQPDLLLFV 543 (630)
Q Consensus 476 v~env~l~~~~~~~d~~~ia~~ai~~a~------~--~~~D~vl----IDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV 543 (630)
+++|+.+.... .+..++ .++++.+. . .++|..+ ...|||++|+..++|+|. .+| .+|++
T Consensus 480 i~eNi~~g~~~--~~~~~~-~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~QriaiARal~-----~~p-~iliL 550 (1284)
T 3g5u_A 480 IAENIRYGRED--VTMDEI-EKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALV-----RNP-KILLL 550 (1284)
T ss_dssp HHHHHHHHCSS--CCHHHH-HHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHH-----HCC-SEEEE
T ss_pred HHHHHhcCCCC--CCHHHH-HHHHHHhCcHHHHHhccccccccccCCCCccCHHHHHHHHHHHHHh-----cCC-CEEEE
Confidence 99999876432 222222 22222211 1 2344332 357999999999999999 788 56779
Q ss_pred eccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 544 GEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 544 ~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
|||++++|.... ..+.+.+..... +.+.|++|+
T Consensus 551 DEpts~LD~~~~-~~i~~~l~~~~~-----~~t~i~itH 583 (1284)
T 3g5u_A 551 DEATSALDTESE-AVVQAALDKARE-----GRTTIVIAH 583 (1284)
T ss_dssp ESTTCSSCHHHH-HHHHHHHHHHHT-----TSEEEEECS
T ss_pred ECCCCCCCHHHH-HHHHHHHHHHcC-----CCEEEEEec
Confidence 999999998654 344455544332 567778776
No 65
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.43 E-value=5.1e-14 Score=172.51 Aligned_cols=170 Identities=19% Similarity=0.173 Sum_probs=127.4
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccCCCcCCcc
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHPAAKHGG 476 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~~~~~tv 476 (630)
.+|++++|.+++| ++++|||||||||||+++.|++++.|..|+|.+.+.|+.... ...+|....++.+.+.....|+
T Consensus 1047 ~~l~~vsl~i~~G--e~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~i~g~~i~~~~-~~~~r~~i~~v~Q~~~l~~~ti 1123 (1284)
T 3g5u_A 1047 PVLQGLSLEVKKG--QTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLN-VQWLRAQLGIVSQEPILFDCSI 1123 (1284)
T ss_dssp CSBSSCCEEECSS--SEEEEECSSSTTHHHHHHHHTTSSCCSEEEEESSSSCTTSSC-HHHHTTSCEEEESSCCCCSSBH
T ss_pred eeecceeEEEcCC--CEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEcccCC-HHHHHhceEEECCCCccccccH
Confidence 4899999999999 999999999999999999999999999999999999985544 3567777777777766677899
Q ss_pred hhhhHhhhccCCCCHHHHHHHHHHHhh--------hcCCCeeee----ccccchhchHHHHHHHHhhhhhcCCCeEEEEe
Q psy11993 477 REMVQLFEKGYGKDPAEIAFRAISHAR--------DMHIDVVLI----DTAGRMQDNEPLMRALAKLVKVNQPDLLLFVG 544 (630)
Q Consensus 477 ~env~l~~~~~~~d~~~ia~~ai~~a~--------~~~~D~vlI----DTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~ 544 (630)
++|+.+.......+..++ .++++.+. ..++|..+- ..|||++|+..++|+|. .+| .+|++|
T Consensus 1124 ~eNi~~~~~~~~~~~~~i-~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv~iARal~-----~~p-~iLiLD 1196 (1284)
T 3g5u_A 1124 AENIAYGDNSRVVSYEEI-VRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALV-----RQP-HILLLD 1196 (1284)
T ss_dssp HHHHTCCCSSCCCCHHHH-HHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHHHHHHHHHHH-----HCC-SSEEEE
T ss_pred HHHHhccCCCCCCCHHHH-HHHHHHhCcHHHHHhCccccccccCCCCCccCHHHHHHHHHHHHHH-----cCC-CEEEEe
Confidence 999987543222333332 22222221 123454433 47999999999999999 788 566799
Q ss_pred ccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 545 EALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 545 E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
||+.++|..... .+.+.+.++. .+.+.|++|+
T Consensus 1197 EpTs~lD~~~~~-~i~~~l~~~~-----~~~tvi~isH 1228 (1284)
T 3g5u_A 1197 EATSALDTESEK-VVQEALDKAR-----EGRTCIVIAH 1228 (1284)
T ss_dssp SCSSSCCHHHHH-HHHHHHHHHS-----SSSCEEEECS
T ss_pred CCcccCCHHHHH-HHHHHHHHhC-----CCCEEEEEec
Confidence 999999987653 4445565443 2567888887
No 66
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.36 E-value=3.1e-13 Score=151.65 Aligned_cols=159 Identities=11% Similarity=0.033 Sum_probs=106.2
Q ss_pred hhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhccc-CCCcCCcch
Q psy11993 399 LRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSL-HPAAKHGGR 477 (630)
Q Consensus 399 L~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~-~~~~~~tv~ 477 (630)
|..+++.+.+| ++++|+|||||||||+++.|++.+.+..|+|.+.+..+ .++.+. .....+|+.
T Consensus 284 l~~~~~~i~~G--ei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~i-------------~~~~q~~~~~~~~tv~ 348 (538)
T 3ozx_A 284 LVVDNGEAKEG--EIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQIL-------------SYKPQRIFPNYDGTVQ 348 (538)
T ss_dssp EEECCEEEETT--CEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSCCCE-------------EEECSSCCCCCSSBHH
T ss_pred EEeccceECCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCeee-------------EeechhcccccCCCHH
Confidence 33445667888 99999999999999999999999999999998654322 112221 123457888
Q ss_pred hhhHhhhccCCCCHHHHHHHHHHHhhhcC-CCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCccHHHHH
Q psy11993 478 EMVQLFEKGYGKDPAEIAFRAISHARDMH-IDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQL 556 (630)
Q Consensus 478 env~l~~~~~~~d~~~ia~~ai~~a~~~~-~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~Dav~ql 556 (630)
+|+......+.......+.++++.+.... .+..+-..|||++|+..++++|+ .+| .+|++|||+.|+|...+.
T Consensus 349 ~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRv~iAraL~-----~~p-~lLlLDEPT~gLD~~~~~ 422 (538)
T 3ozx_A 349 QYLENASKDALSTSSWFFEEVTKRLNLHRLLESNVNDLSGGELQKLYIAATLA-----KEA-DLYVLDQPSSYLDVEERY 422 (538)
T ss_dssp HHHHHHCSSTTCTTSHHHHHTTTTTTGGGCTTSBGGGCCHHHHHHHHHHHHHH-----SCC-SEEEEESTTTTCCHHHHH
T ss_pred HHHHHhhhhccchhHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHH-----cCC-CEEEEeCCccCCCHHHHH
Confidence 88876432221111122333333333222 34556778999999999999999 888 566699999999987764
Q ss_pred HHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 557 VKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 557 ~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
. +.+.+.++.. ..+.+.|++|+
T Consensus 423 ~-i~~~l~~l~~---~~g~tvi~vsH 444 (538)
T 3ozx_A 423 I-VAKAIKRVTR---ERKAVTFIIDH 444 (538)
T ss_dssp H-HHHHHHHHHH---HTTCEEEEECS
T ss_pred H-HHHHHHHHHH---hCCCEEEEEeC
Confidence 3 3344554432 12567788887
No 67
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.31 E-value=5.4e-13 Score=151.67 Aligned_cols=156 Identities=13% Similarity=0.077 Sum_probs=106.0
Q ss_pred hhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccCC-CcCCcch
Q psy11993 399 LRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHP-AAKHGGR 477 (630)
Q Consensus 399 L~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~-~~~~tv~ 477 (630)
|+.++|.+.+| ++++|+||||+||||+++.|++.+.+..|+|.+ + . ...++.+... .+.+|+.
T Consensus 372 l~~~~~~v~~G--ei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~---~-~----------~i~~v~Q~~~~~~~~tv~ 435 (607)
T 3bk7_A 372 LEVEPGEIRKG--EVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEW---D-L----------TVAYKPQYIKAEYEGTVY 435 (607)
T ss_dssp EEECCEEEETT--CEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCC---C-C----------CEEEECSSCCCCCSSBHH
T ss_pred EEecccccCCC--CEEEEECCCCCCHHHHHHHHhcCCCCCceEEEE---e-e----------EEEEEecCccCCCCCcHH
Confidence 33444456778 999999999999999999999999999999875 1 0 1233444322 3567888
Q ss_pred hhhHhh-hccCCCCHHHHHHHHHHHhhhcC-CCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCccHHHH
Q psy11993 478 EMVQLF-EKGYGKDPAEIAFRAISHARDMH-IDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQ 555 (630)
Q Consensus 478 env~l~-~~~~~~d~~~ia~~ai~~a~~~~-~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~Dav~q 555 (630)
+++..+ ...+. + ...+.++++.+.... .+..+-.+|||++++..++++|. .+| .+|++|||++|+|...+
T Consensus 436 e~~~~~~~~~~~-~-~~~~~~~l~~~~l~~~~~~~~~~LSGGe~QRv~iAraL~-----~~p-~lLlLDEPt~~LD~~~~ 507 (607)
T 3bk7_A 436 ELLSKIDSSKLN-S-NFYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLL-----RDA-DIYLLDEPSAYLDVEQR 507 (607)
T ss_dssp HHHHHHHHHHHH-C-HHHHHHTHHHHTCTTTTTSBGGGCCHHHHHHHHHHHHHT-----SCC-SEEEEECTTTTCCHHHH
T ss_pred HHHHhhhccCCC-H-HHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHH-----hCC-CEEEEeCCccCCCHHHH
Confidence 877654 11111 1 123344555554433 24556788999999999999999 788 56669999999998776
Q ss_pred HHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 556 LVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 556 l~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
.. +.+.++++.. ..+.+.|++|+
T Consensus 508 ~~-l~~~l~~l~~---~~g~tvi~vsH 530 (607)
T 3bk7_A 508 LA-VSRAIRHLME---KNEKTALVVEH 530 (607)
T ss_dssp HH-HHHHHHHHHH---HTTCEEEEECS
T ss_pred HH-HHHHHHHHHH---hCCCEEEEEeC
Confidence 44 3445555532 12567788887
No 68
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.31 E-value=1.5e-12 Score=149.66 Aligned_cols=176 Identities=15% Similarity=0.132 Sum_probs=89.8
Q ss_pred chhhhhhhhhhhccCCCeEEEEEccCCCChHHHH---------------------HHHHHHHHhc-------CCeEEEee
Q psy11993 395 RVDILRDALEAKKQGRPFVMAFCGVNGVGKSTNL---------------------AKICFWLIEN-------NLNVLIAA 446 (630)
Q Consensus 395 ~~~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTll---------------------akLA~~l~~~-------ggkVlI~~ 446 (630)
...+|++|+|.+++| ++++|+|||||||||++ ..++++..+. .+.|.+.+
T Consensus 30 ~~~~L~~vsl~i~~G--e~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~ 107 (670)
T 3ux8_A 30 RAHNLKNIDVEIPRG--KLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQ 107 (670)
T ss_dssp CSTTCCSEEEEEETT--SEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESS
T ss_pred CccceeccEEEECCC--CEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecC
Confidence 356899999999999 99999999999999998 6667777666 34455444
Q ss_pred cccCC-----ccHHHHH----HHHHhhhcc------cCCCcCCcchhhhHhhhccCCCC-HHHH-------HHHHHHHhh
Q psy11993 447 CDTFR-----AGAVEQL----RTHVRHLCS------LHPAAKHGGREMVQLFEKGYGKD-PAEI-------AFRAISHAR 503 (630)
Q Consensus 447 ~Dt~R-----~ga~eQL----r~~~~~l~~------~~~~~~~tv~env~l~~~~~~~d-~~~i-------a~~ai~~a~ 503 (630)
.+..+ .+.+.|. +.....++. ...++.+|+.+|+.++....... .... ..+.+..+.
T Consensus 108 ~~~~~~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 187 (670)
T 3ux8_A 108 KTTSRNPRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRLGFLQ 187 (670)
T ss_dssp CC-----CCBHHHHTTCC-------------------------CC--------------------------CHHHHHHHH
T ss_pred chhhccchhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHHHHHHHHHHHHHH
Confidence 43311 0111110 000000110 00134578888887753211100 0000 011111122
Q ss_pred hcC-----CCeeeeccccchhchHHHHHHHHhhhhhcCCC-eEEEEeccccCccHHHHHHHHHHHHhhcccCCCCCCeeE
Q psy11993 504 DMH-----IDVVLIDTAGRMQDNEPLMRALAKLVKVNQPD-LLLFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDG 577 (630)
Q Consensus 504 ~~~-----~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd-~VLlV~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~g 577 (630)
..+ .+..+-..||+++++..|+++|. .+|+ .+|++|||++|+|...+.. +.+.+.++.. .+.+.
T Consensus 188 ~~gL~~~~~~~~~~~LSGGe~QRv~iArAL~-----~~p~~~lLlLDEPtsgLD~~~~~~-l~~~l~~l~~----~g~tv 257 (670)
T 3ux8_A 188 NVGLDYLTLSRSAGTLSGGEAQRIRLATQIG-----SRLTGVLYVLDEPSIGLHQRDNDR-LIATLKSMRD----LGNTL 257 (670)
T ss_dssp HTTCTTCCTTCBGGGSCHHHHHHHHHHHHHH-----TCCCSCEEEEECTTTTCCGGGHHH-HHHHHHHHHH----TTCEE
T ss_pred HcCCchhhhcCCcccCCHHHHHHHHHHHHHh-----hCCCCCEEEEECCccCCCHHHHHH-HHHHHHHHHH----cCCEE
Confidence 222 24556778999999999999999 7774 4777999999999776543 3344554432 25788
Q ss_pred EEEcc
Q psy11993 578 IVLTK 582 (630)
Q Consensus 578 IIlTK 582 (630)
|++|+
T Consensus 258 i~vtH 262 (670)
T 3ux8_A 258 IVVEH 262 (670)
T ss_dssp EEECC
T ss_pred EEEeC
Confidence 99998
No 69
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.25 E-value=9.8e-13 Score=147.68 Aligned_cols=156 Identities=13% Similarity=0.073 Sum_probs=102.1
Q ss_pred hhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccCC-CcCCcch
Q psy11993 399 LRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHP-AAKHGGR 477 (630)
Q Consensus 399 L~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~-~~~~tv~ 477 (630)
|+.++|.+.+| ++++|+|||||||||+++.|++.+.+..|+|.+ + .+ ..++.+... .+.+|+.
T Consensus 302 l~~~~~~i~~G--e~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~---~-~~----------i~~v~Q~~~~~~~~tv~ 365 (538)
T 1yqt_A 302 LEVEPGEIKKG--EVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEW---D-LT----------VAYKPQYIKADYEGTVY 365 (538)
T ss_dssp EEECCEEEETT--CEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCC---C-CC----------EEEECSSCCCCCSSBHH
T ss_pred EEeCccccCCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEE---C-ce----------EEEEecCCcCCCCCcHH
Confidence 34455556788 999999999999999999999999999999875 1 01 233443322 3457887
Q ss_pred hhhHhh-hccCCCCHHHHHHHHHHHhhhcC-CCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCccHHHH
Q psy11993 478 EMVQLF-EKGYGKDPAEIAFRAISHARDMH-IDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQ 555 (630)
Q Consensus 478 env~l~-~~~~~~d~~~ia~~ai~~a~~~~-~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~Dav~q 555 (630)
+++..+ ...+. + ...+.++++.+.... .+..+-.+|||++++..++++|. .+| .+|++|||+.|+|...+
T Consensus 366 ~~~~~~~~~~~~-~-~~~~~~~l~~~~l~~~~~~~~~~LSGGe~qrv~lAraL~-----~~p-~lLlLDEPt~~LD~~~~ 437 (538)
T 1yqt_A 366 ELLSKIDASKLN-S-NFYKTELLKPLGIIDLYDREVNELSGGELQRVAIAATLL-----RDA-DIYLLDEPSAYLDVEQR 437 (538)
T ss_dssp HHHHHHHHHHHT-C-HHHHHHTTTTTTCGGGTTSBGGGCCHHHHHHHHHHHHHT-----SCC-SEEEEECTTTTCCHHHH
T ss_pred HHHHhhhccCCC-H-HHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHH-----hCC-CEEEEeCCcccCCHHHH
Confidence 776543 11111 1 122233333222211 23446678999999999999999 788 56679999999998776
Q ss_pred HHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 556 LVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 556 l~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
.. +.+.+.++.. ..+.+.|++|+
T Consensus 438 ~~-i~~~l~~l~~---~~g~tvi~vsH 460 (538)
T 1yqt_A 438 LA-VSRAIRHLME---KNEKTALVVEH 460 (538)
T ss_dssp HH-HHHHHHHHHH---HHTCEEEEECS
T ss_pred HH-HHHHHHHHHH---hCCCEEEEEeC
Confidence 44 3344554421 01467777776
No 70
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.23 E-value=4e-12 Score=144.52 Aligned_cols=164 Identities=18% Similarity=0.160 Sum_probs=101.5
Q ss_pred hhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecc----cCCccHHHHH-HH-HHhh--hc---
Q psy11993 398 ILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACD----TFRAGAVEQL-RT-HVRH--LC--- 466 (630)
Q Consensus 398 iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~D----t~R~ga~eQL-r~-~~~~--l~--- 466 (630)
+|.+++ .+.+| ++++|+||||+||||+++.|++.+.|+.|++.. ..+ .++....... .. .... +.
T Consensus 107 ~l~~vs-~i~~G--e~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~~~-~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~~ 182 (607)
T 3bk7_A 107 VLYRLP-IVKDG--MVVGIVGPNGTGKTTAVKILAGQLIPNLCEDND-SWDNVIRAFRGNELQNYFERLKNGEIRPVVKP 182 (607)
T ss_dssp EEECCC-CCCTT--SEEEEECCTTSSHHHHHHHHTTSSCCCTTTTCC-CHHHHHHHTTTSTHHHHHHHHHHTSCCCEEEC
T ss_pred eeCCCC-CCCCC--CEEEEECCCCChHHHHHHHHhCCCCCCCCcccc-ccchhhheeCCEehhhhhhhhhhhhcceEEee
Confidence 677888 78888 999999999999999999999999998887310 000 0110011010 00 0110 11
Q ss_pred cc-CCCc---CCcchhhhHhhhccCCCCHHHHHHHHHHHhhhcC-CCeeeeccccchhchHHHHHHHHhhhhhcCCCeEE
Q psy11993 467 SL-HPAA---KHGGREMVQLFEKGYGKDPAEIAFRAISHARDMH-IDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLL 541 (630)
Q Consensus 467 ~~-~~~~---~~tv~env~l~~~~~~~d~~~ia~~ai~~a~~~~-~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VL 541 (630)
+. ...+ ..++.+++.... .. ..+.++++.+.... .+..+-..|||++++..|+++|. .+| .+|
T Consensus 183 q~~~~~~~~~~~tv~e~l~~~~---~~---~~~~~~L~~lgL~~~~~~~~~~LSGGekQRvaIAraL~-----~~P-~lL 250 (607)
T 3bk7_A 183 QYVDLLPKAVKGKVRELLKKVD---EV---GKFEEVVKELELENVLDRELHQLSGGELQRVAIAAALL-----RKA-HFY 250 (607)
T ss_dssp SCGGGGGGTCCSBHHHHHHHTC---CS---SCHHHHHHHTTCTTGGGSBGGGCCHHHHHHHHHHHHHH-----SCC-SEE
T ss_pred chhhhchhhccccHHHHhhhhH---HH---HHHHHHHHHcCCCchhCCChhhCCHHHHHHHHHHHHHh-----cCC-CEE
Confidence 10 0011 125666664311 11 11334555444332 24446678999999999999999 889 566
Q ss_pred EEeccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 542 FVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 542 lV~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
++|||++++|...+. .+.+.++++.. .+.+.|++|+
T Consensus 251 lLDEPTs~LD~~~~~-~l~~~L~~l~~----~g~tvIivsH 286 (607)
T 3bk7_A 251 FFDEPSSYLDIRQRL-KVARVIRRLAN----EGKAVLVVEH 286 (607)
T ss_dssp EEECTTTTCCHHHHH-HHHHHHHHHHH----TTCEEEEECS
T ss_pred EEECCcccCCHHHHH-HHHHHHHHHHh----cCCEEEEEec
Confidence 699999999987654 34445655543 1577888887
No 71
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.22 E-value=5.2e-11 Score=126.08 Aligned_cols=133 Identities=20% Similarity=0.237 Sum_probs=83.4
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCcc---HHHHHHHHHhhhcccCCCcC
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAG---AVEQLRTHVRHLCSLHPAAK 473 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~g---a~eQLr~~~~~l~~~~~~~~ 473 (630)
.+|+++++.+.+| ++++|+|||||||||++++|++++.+.+++|.+.+.|+.... +....+....++.+...
T Consensus 43 ~~l~~i~~~~~~g--~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~--- 117 (337)
T 2qm8_A 43 DLIDAVLPQTGRA--IRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRN--- 117 (337)
T ss_dssp HHHHHHGGGCCCS--EEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTT---
T ss_pred HHHHhCCcccCCC--eEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhhhheeeccCcc---
Confidence 4788899988888 999999999999999999999999999999999999985321 11011112222222110
Q ss_pred CcchhhhHhhhccCCCC---HHHHHHHHHHHhhhcCCCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccC
Q psy11993 474 HGGREMVQLFEKGYGKD---PAEIAFRAISHARDMHIDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVG 549 (630)
Q Consensus 474 ~tv~env~l~~~~~~~d---~~~ia~~ai~~a~~~~~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g 549 (630)
+.......... ......+++......+++++++||+|..+....+ . ...|.++++.++..+
T Consensus 118 ------~~~~~~~~~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~~v----~-----~~~d~vl~v~d~~~~ 181 (337)
T 2qm8_A 118 ------AFIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETAV----A-----DLTDFFLVLMLPGAG 181 (337)
T ss_dssp ------EEEECCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHH----H-----TTSSEEEEEECSCC-
T ss_pred ------cccccCcccccccchHHHHHHHHHHHhcCCCCEEEEECCCCCcchhhH----H-----hhCCEEEEEEcCCCc
Confidence 10000000000 1112233333445678999999999976543322 2 356788888887544
No 72
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.20 E-value=6.8e-12 Score=140.85 Aligned_cols=164 Identities=17% Similarity=0.132 Sum_probs=100.0
Q ss_pred hhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecc----cCCccHHHHH--HHHHhh--hcccC
Q psy11993 398 ILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACD----TFRAGAVEQL--RTHVRH--LCSLH 469 (630)
Q Consensus 398 iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~D----t~R~ga~eQL--r~~~~~--l~~~~ 469 (630)
+|.+++ .+.+| ++++|+|||||||||++++|++.+.|+.|++.. ..+ .+........ ...... +...+
T Consensus 37 ~l~~vs-~i~~G--e~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 112 (538)
T 1yqt_A 37 VLYRLP-VVKEG--MVVGIVGPNGTGKSTAVKILAGQLIPNLCGDND-SWDGVIRAFRGNELQNYFEKLKNGEIRPVVKP 112 (538)
T ss_dssp EEECCC-CCCTT--SEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCC-SHHHHHHHTTTSTHHHHHHHHHTTSCCCEEEC
T ss_pred cccCcC-cCCCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCCccCc-chhhhHHhhCCccHHHHHHHHHHHhhhhhhhh
Confidence 688888 88899 999999999999999999999999998887310 000 0000001000 000000 11101
Q ss_pred C----Cc---CCcchhhhHhhhccCCCCHHHHHHHHHHHhhhcC-CCeeeeccccchhchHHHHHHHHhhhhhcCCCeEE
Q psy11993 470 P----AA---KHGGREMVQLFEKGYGKDPAEIAFRAISHARDMH-IDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLL 541 (630)
Q Consensus 470 ~----~~---~~tv~env~l~~~~~~~d~~~ia~~ai~~a~~~~-~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VL 541 (630)
+ .+ ..++.+++.... .. ..+.++++.+.... .+..+-..||+++++..|+++|. .+| .+|
T Consensus 113 q~~~~~~~~~~~~v~e~~~~~~---~~---~~~~~~l~~lgl~~~~~~~~~~LSgGekQRv~iAraL~-----~~P-~lL 180 (538)
T 1yqt_A 113 QYVDLIPKAVKGKVIELLKKAD---ET---GKLEEVVKALELENVLEREIQHLSGGELQRVAIAAALL-----RNA-TFY 180 (538)
T ss_dssp SCGGGSGGGCCSBHHHHHHHHC---SS---SCHHHHHHHTTCTTTTTSBGGGCCHHHHHHHHHHHHHH-----SCC-SEE
T ss_pred hhhhhcchhhhccHHHHHhhhh---HH---HHHHHHHHHcCCChhhhCChhhCCHHHHHHHHHHHHHh-----cCC-CEE
Confidence 1 11 124555443211 01 11334454444322 34556788999999999999999 889 566
Q ss_pred EEeccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 542 FVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 542 lV~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
++|||++++|...+.. +.+.+.++.. .+.+.|++|+
T Consensus 181 lLDEPTs~LD~~~~~~-l~~~L~~l~~----~g~tvi~vsH 216 (538)
T 1yqt_A 181 FFDEPSSYLDIRQRLN-AARAIRRLSE----EGKSVLVVEH 216 (538)
T ss_dssp EEESTTTTCCHHHHHH-HHHHHHHHHH----TTCEEEEECS
T ss_pred EEECCcccCCHHHHHH-HHHHHHHHHh----cCCEEEEEeC
Confidence 6999999999876543 3445555543 2577888887
No 73
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.17 E-value=1.9e-11 Score=138.85 Aligned_cols=160 Identities=14% Similarity=0.117 Sum_probs=102.8
Q ss_pred hhhhhhhhhccCC---CeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccC-CCcC
Q psy11993 398 ILRDALEAKKQGR---PFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLH-PAAK 473 (630)
Q Consensus 398 iL~~i~~~i~~g~---p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~-~~~~ 473 (630)
++++++|.+..|. .++++|+||||+||||+++.|++++.+..|+. ..+. ...++.+.. ....
T Consensus 362 ~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~------~~~~--------~i~~~~q~~~~~~~ 427 (608)
T 3j16_B 362 TQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQD------IPKL--------NVSMKPQKIAPKFP 427 (608)
T ss_dssp ECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCC------CCSC--------CEEEECSSCCCCCC
T ss_pred ccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCCCCcC------ccCC--------cEEEecccccccCC
Confidence 5677888887762 26799999999999999999999999988762 1110 011222211 1233
Q ss_pred CcchhhhHhhhccCCCCHHHHHHHHHHHhhhcC-CCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCccH
Q psy11993 474 HGGREMVQLFEKGYGKDPAEIAFRAISHARDMH-IDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEA 552 (630)
Q Consensus 474 ~tv~env~l~~~~~~~d~~~ia~~ai~~a~~~~-~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~Da 552 (630)
.++.+++.........+. ..+.++++.+...+ .+..+-.+|||++|+..++++|+ .+| .+|++|||+.|+|.
T Consensus 428 ~tv~e~~~~~~~~~~~~~-~~~~~~l~~l~l~~~~~~~~~~LSGGqkQRv~iAraL~-----~~p-~lLlLDEPT~gLD~ 500 (608)
T 3j16_B 428 GTVRQLFFKKIRGQFLNP-QFQTDVVKPLRIDDIIDQEVQHLSGGELQRVAIVLALG-----IPA-DIYLIDEPSAYLDS 500 (608)
T ss_dssp SBHHHHHHHHCSSTTTSH-HHHHHTHHHHTSTTTSSSBSSSCCHHHHHHHHHHHHTT-----SCC-SEEEECCTTTTCCH
T ss_pred ccHHHHHHHHhhcccccH-HHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHH-----hCC-CEEEEECCCCCCCH
Confidence 566666543211111222 23444555554433 25556788999999999999999 888 56669999999998
Q ss_pred HHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 553 VDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 553 v~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
..+.. +.+.+.++.. ..+.+.+++|+
T Consensus 501 ~~~~~-i~~ll~~l~~---~~g~tviivtH 526 (608)
T 3j16_B 501 EQRII-CSKVIRRFIL---HNKKTAFIVEH 526 (608)
T ss_dssp HHHHH-HHHHHHHHHH---HHTCEEEEECS
T ss_pred HHHHH-HHHHHHHHHH---hCCCEEEEEeC
Confidence 76543 3334444321 12577888887
No 74
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.13 E-value=6.8e-11 Score=132.66 Aligned_cols=152 Identities=13% Similarity=0.031 Sum_probs=91.2
Q ss_pred ccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEE-----------EeecccCCccHHHHHHHHHhhhc------ccC
Q psy11993 407 KQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVL-----------IAACDTFRAGAVEQLRTHVRHLC------SLH 469 (630)
Q Consensus 407 ~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVl-----------I~~~Dt~R~ga~eQLr~~~~~l~------~~~ 469 (630)
.+| ++++|+|||||||||++++|++.+.|+.|+|. +.+.+.. ...+ ........ ...
T Consensus 23 ~~G--ei~gLiGpNGaGKSTLlkiL~Gl~~p~~G~i~~~~~~~~~~~~~~g~~i~---~~~~-~~~~~~~~~~~~~~~~~ 96 (538)
T 3ozx_A 23 KNN--TILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIY---NYFK-ELYSNELKIVHKIQYVE 96 (538)
T ss_dssp CTT--EEEEEECCTTSSHHHHHHHHTTSSCCCTTCTTSCCCHHHHHHHHTTSTTH---HHHH-HHHTTCCCEEEECSCTT
T ss_pred CCC--CEEEEECCCCCcHHHHHHHHhcCCCCCCCccccccchhhHHhhcCCeeHH---HHHH-HHhhcccchhhccchhh
Confidence 356 99999999999999999999999999988872 1111110 0000 00011010 000
Q ss_pred C---CcCCcchhhhHhhhccCCCCHHHHHHHHHHHhhhcC-CCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEec
Q psy11993 470 P---AAKHGGREMVQLFEKGYGKDPAEIAFRAISHARDMH-IDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGE 545 (630)
Q Consensus 470 ~---~~~~tv~env~l~~~~~~~d~~~ia~~ai~~a~~~~-~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E 545 (630)
. ....++.+++.-. ... ..+.++++.+.... .+..+-+.||+++++..++++|. .+|+ +|++||
T Consensus 97 ~~~~~~~~~v~~~l~~~---~~~---~~~~~~l~~l~l~~~~~~~~~~LSgGe~Qrv~iA~aL~-----~~p~-illlDE 164 (538)
T 3ozx_A 97 YASKFLKGTVNEILTKI---DER---GKKDEVKELLNMTNLWNKDANILSGGGLQRLLVAASLL-----READ-VYIFDQ 164 (538)
T ss_dssp GGGTTCCSBHHHHHHHH---CCS---SCHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHH-----SCCS-EEEEES
T ss_pred hhhhhccCcHHHHhhcc---hhH---HHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHH-----cCCC-EEEEEC
Confidence 0 1112233322111 011 11233444433222 35557788999999999999999 8894 666999
Q ss_pred cccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 546 ALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 546 ~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
|++++|...+.. +.+.++++.. +.+.|++|+
T Consensus 165 Pts~LD~~~~~~-l~~~l~~l~~-----g~tii~vsH 195 (538)
T 3ozx_A 165 PSSYLDVRERMN-MAKAIRELLK-----NKYVIVVDH 195 (538)
T ss_dssp TTTTCCHHHHHH-HHHHHHHHCT-----TSEEEEECS
T ss_pred CcccCCHHHHHH-HHHHHHHHhC-----CCEEEEEEe
Confidence 999999877644 3455665542 567788887
No 75
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.10 E-value=5.1e-10 Score=118.43 Aligned_cols=159 Identities=22% Similarity=0.216 Sum_probs=85.6
Q ss_pred hhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHH-HHHHHHhhhcccCCCcCCcc
Q psy11993 398 ILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVE-QLRTHVRHLCSLHPAAKHGG 476 (630)
Q Consensus 398 iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~e-QLr~~~~~l~~~~~~~~~tv 476 (630)
+++++++....+ .+++|+|++|+||||++..|++.+.+.+++|.+++.|.++..... .+..... + ..++.
T Consensus 45 ~~~~l~~~~~~~--~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~~~~~~~~il~d~~~-~------~~~~~ 115 (341)
T 2p67_A 45 LLDAIMPYCGNT--LRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILGDKTR-M------NDLAR 115 (341)
T ss_dssp HHHHHGGGCSCS--EEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC----------------------CTTTT
T ss_pred HHHhCCcccCCC--EEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCcCCCCcceecccch-H------Hhhcc
Confidence 455666665555 899999999999999999999999999999999999986543110 1111000 0 00111
Q ss_pred hhhhHhhhccCC---CCHHHHHHHHHHHhhhcCCCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCccHH
Q psy11993 477 REMVQLFEKGYG---KDPAEIAFRAISHARDMHIDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAV 553 (630)
Q Consensus 477 ~env~l~~~~~~---~d~~~ia~~ai~~a~~~~~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~Dav 553 (630)
.++..+.....+ ........+.+......+++++++||+|..+.... +. ...|.+++|.++..+.+ .
T Consensus 116 ~~~~~i~~~~~~~~l~g~~~~~~~~~~~~~~~~~~i~liDTpG~~~~~~~----~~-----~~aD~vl~Vvd~~~~~~-~ 185 (341)
T 2p67_A 116 AEAAFIRPVPSSGHLGGASQRARELMLLCEAAGYDVVIVETVGVGQSETE----VA-----RMVDCFISLQIAGGGDD-L 185 (341)
T ss_dssp CTTEEEEEECC-----CHHHHHHHHHHHHHHTTCSEEEEEEECCTTHHHH----HH-----TTCSEEEEEECC-------
T ss_pred CCCceeecCccccccchhHHHHHHHHHHhhccCCCEEEEeCCCccchHHH----HH-----HhCCEEEEEEeCCccHH-H
Confidence 111111000000 01111122233333456899999999997643222 11 46788999999865532 1
Q ss_pred HHHHHHHHHHhhcccCCCCCCeeEEEEcccCCc
Q psy11993 554 DQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTI 586 (630)
Q Consensus 554 ~ql~~f~~~l~~~~~~~~~~~i~gIIlTK~D~~ 586 (630)
..+.. .... ....+|+||+|..
T Consensus 186 ~~l~~--~~~~---------~p~ivv~NK~Dl~ 207 (341)
T 2p67_A 186 QGIKK--GLME---------VADLIVINKDDGD 207 (341)
T ss_dssp CCCCH--HHHH---------HCSEEEECCCCTT
T ss_pred HHHHH--hhhc---------ccCEEEEECCCCC
Confidence 11110 0000 1346899999985
No 76
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.09 E-value=1.1e-10 Score=132.66 Aligned_cols=160 Identities=15% Similarity=0.074 Sum_probs=92.8
Q ss_pred hccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecc-----cCCccHHHHHH--HHHhhhccc--CC-Cc---
Q psy11993 406 KKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACD-----TFRAGAVEQLR--THVRHLCSL--HP-AA--- 472 (630)
Q Consensus 406 i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~D-----t~R~ga~eQLr--~~~~~l~~~--~~-~~--- 472 (630)
+.+| ++++|+||||+||||+++.|++++.|+.|+|...... .++........ .....+... .. ..
T Consensus 100 ~~~G--ei~~LvGpNGaGKSTLLkiL~Gll~P~~G~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (608)
T 3j16_B 100 PRPG--QVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKMLEDDIKAIIKPQYVDNIP 177 (608)
T ss_dssp CCTT--SEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSSCHHHHHHHTTTSTHHHHHHHHHHTSCCCEEECCCTTTHH
T ss_pred CCCC--CEEEEECCCCChHHHHHHHHhcCCCCCCceEecccchhhhhheecChhhhhhhhHHHHHhhhhhhchhhhhhhh
Confidence 4567 9999999999999999999999999999987211000 01100010000 000000000 00 00
Q ss_pred ------CCcchhhhHhhhccCCCCHHHHHHHHHHHhhhcC-CCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEec
Q psy11993 473 ------KHGGREMVQLFEKGYGKDPAEIAFRAISHARDMH-IDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGE 545 (630)
Q Consensus 473 ------~~tv~env~l~~~~~~~d~~~ia~~ai~~a~~~~-~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E 545 (630)
..++.+++.. ..... ...+.++++.+.... .+..+-+.||+++++..++++|. .+|+ +|++||
T Consensus 178 ~~~~~~~~~v~~~l~~---~~~~~-~~~~~~~l~~~gl~~~~~~~~~~LSgGe~Qrv~iAraL~-----~~p~-llllDE 247 (608)
T 3j16_B 178 RAIKGPVQKVGELLKL---RMEKS-PEDVKRYIKILQLENVLKRDIEKLSGGELQRFAIGMSCV-----QEAD-VYMFDE 247 (608)
T ss_dssp HHCSSSSSHHHHHHHH---HCCSC-HHHHHHHHHHHTCTGGGGSCTTTCCHHHHHHHHHHHHHH-----SCCS-EEEEEC
T ss_pred hhhcchhhHHHHHHhh---hhhhH-HHHHHHHHHHcCCcchhCCChHHCCHHHHHHHHHHHHHH-----hCCC-EEEEEC
Confidence 0011111111 11111 223444555444322 24446788999999999999999 8885 666999
Q ss_pred cccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 546 ALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 546 ~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
|++++|...+.. +.+.++++.. .+.+.|++|+
T Consensus 248 Pts~LD~~~~~~-l~~~l~~l~~----~g~tvi~vtH 279 (608)
T 3j16_B 248 PSSYLDVKQRLN-AAQIIRSLLA----PTKYVICVEH 279 (608)
T ss_dssp TTTTCCHHHHHH-HHHHHHGGGT----TTCEEEEECS
T ss_pred cccCCCHHHHHH-HHHHHHHHHh----CCCEEEEEeC
Confidence 999999876543 4455666643 2567788887
No 77
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.09 E-value=1.3e-11 Score=134.17 Aligned_cols=140 Identities=14% Similarity=0.053 Sum_probs=95.1
Q ss_pred hhhhhhhhhhhccCCCe--------------------EEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHH
Q psy11993 396 VDILRDALEAKKQGRPF--------------------VMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAV 455 (630)
Q Consensus 396 ~~iL~~i~~~i~~g~p~--------------------vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~ 455 (630)
..+|++|++.+.+| + +++|+|||||||||+++.|++.+.+..|.|.+.+.++.|.
T Consensus 36 ~~~l~~is~~i~~G--e~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~--- 110 (413)
T 1tq4_A 36 QEILNLIELRMRAG--NIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTME--- 110 (413)
T ss_dssp HHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CC---
T ss_pred HHHhhhccceecCC--CCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeeccee---
Confidence 45788888888888 5 9999999999999999999999999999998877665331
Q ss_pred HHHHHHHhhhcccCCCcCCcchhhhHhhhccCCCCHHHHHHHHHHHhhhcCCCeeeeccccc--hhchHHHHHHHHhh--
Q psy11993 456 EQLRTHVRHLCSLHPAAKHGGREMVQLFEKGYGKDPAEIAFRAISHARDMHIDVVLIDTAGR--MQDNEPLMRALAKL-- 531 (630)
Q Consensus 456 eQLr~~~~~l~~~~~~~~~tv~env~l~~~~~~~d~~~ia~~ai~~a~~~~~D~vlIDTaGr--~~~~~~L~~aL~kl-- 531 (630)
.++.+...++.+++.+++.+... .. ...+.++.....+++.+++ .+++ ++++..++++|...
T Consensus 111 -------~~v~q~~~~~~ltv~D~~g~~~~---~~---~~~~~L~~~~L~~~~~~~~-lS~G~~~kqrv~la~aL~~~~~ 176 (413)
T 1tq4_A 111 -------RHPYKHPNIPNVVFWDLPGIGST---NF---PPDTYLEKMKFYEYDFFII-ISATRFKKNDIDIAKAISMMKK 176 (413)
T ss_dssp -------CEEEECSSCTTEEEEECCCGGGS---SC---CHHHHHHHTTGGGCSEEEE-EESSCCCHHHHHHHHHHHHTTC
T ss_pred -------EEeccccccCCeeehHhhcccch---HH---HHHHHHHHcCCCccCCeEE-eCCCCccHHHHHHHHHHHhcCC
Confidence 22322222345677776654321 11 1344555555556677666 8888 99999999999852
Q ss_pred ---hhhcCCCeEEEEeccccCccHHHH
Q psy11993 532 ---VKVNQPDLLLFVGEALVGNEAVDQ 555 (630)
Q Consensus 532 ---~~~~~Pd~VLlV~E~~~g~Dav~q 555 (630)
+..++|+. +++|||+.|+|...+
T Consensus 177 p~~lV~tkpdl-llLDEPtsgLD~~~~ 202 (413)
T 1tq4_A 177 EFYFVRTKVDS-DITNEADGEPQTFDK 202 (413)
T ss_dssp EEEEEECCHHH-HHHHHHTTCCTTCCH
T ss_pred CeEEEEecCcc-cccCcccccCCHHHH
Confidence 11226644 448999999987544
No 78
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.09 E-value=1.1e-10 Score=134.36 Aligned_cols=97 Identities=9% Similarity=0.033 Sum_probs=61.3
Q ss_pred CCcchhhhHhhhccCCCCHHHHHHHHHHHhhhcC--CCeeeeccccchhchHHHHHHHHhhhhhcCCC--eEEEEecccc
Q psy11993 473 KHGGREMVQLFEKGYGKDPAEIAFRAISHARDMH--IDVVLIDTAGRMQDNEPLMRALAKLVKVNQPD--LLLFVGEALV 548 (630)
Q Consensus 473 ~~tv~env~l~~~~~~~d~~~ia~~ai~~a~~~~--~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd--~VLlV~E~~~ 548 (630)
.+|+.+|+.++... .....+.+.+..+.... .+...-..|||++++..++++|. .+|. .+|++|||++
T Consensus 504 ~ltv~e~l~~~~~~---~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iAraL~-----~~p~~p~llllDEPt~ 575 (670)
T 3ux8_A 504 DMTVEDALDFFASI---PKIKRKLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELH-----RRSNGRTLYILDEPTT 575 (670)
T ss_dssp TSBHHHHHHHTTTC---HHHHHHHHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHHHH-----SCCCSCEEEEEESTTT
T ss_pred hCCHHHHHHHHHHh---hhHHHHHHHHHHcCCchhhccCCchhCCHHHHHHHHHHHHHh-----hCCCCCcEEEEeCCCC
Confidence 35677777665321 11112223333322211 23445678999999999999998 6664 6888999999
Q ss_pred CccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 549 GNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 549 g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
|+|...+.. +.+.+.++.. .+.+.|++|+
T Consensus 576 ~LD~~~~~~-i~~~l~~l~~----~g~tvi~vtH 604 (670)
T 3ux8_A 576 GLHVDDIAR-LLDVLHRLVD----NGDTVLVIEH 604 (670)
T ss_dssp TCCHHHHHH-HHHHHHHHHH----TTCEEEEECC
T ss_pred CCCHHHHHH-HHHHHHHHHH----CCCEEEEEeC
Confidence 999877643 3344555432 2678899998
No 79
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.09 E-value=1.1e-10 Score=138.31 Aligned_cols=151 Identities=19% Similarity=0.149 Sum_probs=99.6
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhccc--CCCcCC
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSL--HPAAKH 474 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~--~~~~~~ 474 (630)
.+|++++|.+.+| ++++|+|||||||||+++.|++ |.| .+.+..+ ..+ ..++.+. ..++.+
T Consensus 449 ~iL~~vsl~I~~G--e~v~LiGpNGsGKSTLLk~Lag------G~i--~g~~~~~-----~~~--~~~v~q~~~~~~~~l 511 (986)
T 2iw3_A 449 ILLNKTQLRLKRA--RRYGICGPNGCGKSTLMRAIAN------GQV--DGFPTQE-----ECR--TVYVEHDIDGTHSDT 511 (986)
T ss_dssp EEEEEEEEEEETT--CEEEEECSTTSSHHHHHHHHHH------TCS--TTCCCTT-----TSC--EEETTCCCCCCCTTS
T ss_pred EeEecceEEEcCC--CEEEEECCCCCCHHHHHHHHhC------CCc--CCCcccc-----cee--EEEEcccccccccCC
Confidence 4799999999999 9999999999999999999995 332 1222110 001 1122222 124567
Q ss_pred cchhhhHhhhccCCCCHHHHHHHHHHHhhhc--CCCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCccH
Q psy11993 475 GGREMVQLFEKGYGKDPAEIAFRAISHARDM--HIDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEA 552 (630)
Q Consensus 475 tv~env~l~~~~~~~d~~~ia~~ai~~a~~~--~~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~Da 552 (630)
|+.+++.+ ..++. ...+.++++.+... ..+..+-.+|||++++..|+++|. .+| .+|++|||++++|.
T Consensus 512 tv~e~l~~--~~~~~--~~~v~~~L~~lgL~~~~~~~~~~~LSGGqkQRvaLArAL~-----~~P-~lLLLDEPTs~LD~ 581 (986)
T 2iw3_A 512 SVLDFVFE--SGVGT--KEAIKDKLIEFGFTDEMIAMPISALSGGWKMKLALARAVL-----RNA-DILLLDEPTNHLDT 581 (986)
T ss_dssp BHHHHHHT--TCSSC--HHHHHHHHHHTTCCHHHHHSBGGGCCHHHHHHHHHHHHHH-----TTC-SEEEEESTTTTCCH
T ss_pred cHHHHHHH--hhcCH--HHHHHHHHHHcCCChhhhcCCcccCCHHHHHHHHHHHHHh-----cCC-CEEEEECCccCCCH
Confidence 88888865 11222 22333444433321 113346688999999999999999 888 46669999999998
Q ss_pred HHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 553 VDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 553 v~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
..+. .+.+.+.+ .+.+.|++|+
T Consensus 582 ~~~~-~l~~~L~~-------~g~tvIivSH 603 (986)
T 2iw3_A 582 VNVA-WLVNYLNT-------CGITSITISH 603 (986)
T ss_dssp HHHH-HHHHHHHH-------SCSEEEEECS
T ss_pred HHHH-HHHHHHHh-------CCCEEEEEEC
Confidence 7654 34445543 2577888887
No 80
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.07 E-value=3.8e-12 Score=140.25 Aligned_cols=182 Identities=12% Similarity=0.062 Sum_probs=107.3
Q ss_pred hhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCC-e-EEEeecccCCccHHHHHHHHHhhhcccC---C-CcCC
Q psy11993 401 DALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNL-N-VLIAACDTFRAGAVEQLRTHVRHLCSLH---P-AAKH 474 (630)
Q Consensus 401 ~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~gg-k-VlI~~~Dt~R~ga~eQLr~~~~~l~~~~---~-~~~~ 474 (630)
++++.+.+| ++++|+|||||||||+++.|++++.+.+| + |.+.+ |.. ....++.+.. + ...+
T Consensus 130 ~vsl~i~~G--e~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg-~~~---------~~i~~vpq~~~l~~~~~~~ 197 (460)
T 2npi_A 130 KIRMSNFEG--PRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINL-DPQ---------QPIFTVPGCISATPISDIL 197 (460)
T ss_dssp HHHHHSSSC--CCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEEC-CTT---------SCSSSCSSCCEEEECCSCC
T ss_pred cCceEeCCC--CEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcC-Ccc---------CCeeeeccchhhccccccc
Confidence 578888888 89999999999999999999999999999 8 77765 431 1122233322 1 2345
Q ss_pred cchhhhHhhhcc-CCCCHHHHHHHHHHHhhhcCCCeeeeccccchhchHHHHHH--HHhhhhhcCCCeE----EEEec-c
Q psy11993 475 GGREMVQLFEKG-YGKDPAEIAFRAISHARDMHIDVVLIDTAGRMQDNEPLMRA--LAKLVKVNQPDLL----LFVGE-A 546 (630)
Q Consensus 475 tv~env~l~~~~-~~~d~~~ia~~ai~~a~~~~~D~vlIDTaGr~~~~~~L~~a--L~kl~~~~~Pd~V----LlV~E-~ 546 (630)
++.+|+ +.... .+......+..++..+....+.. ....+|+++++..++++ |. .+| .+ |++|| |
T Consensus 198 tv~eni-~~~~~~~~~~~~~~~~~ll~~~gl~~~~~-~~~LSgGq~qrlalAra~rL~-----~~p-~i~~sGLlLDEpP 269 (460)
T 2npi_A 198 DAQLPT-WGQSLTSGATLLHNKQPMVKNFGLERINE-NKDLYLECISQLGQVVGQRLH-----LDP-QVRRSGCIVDTPS 269 (460)
T ss_dssp CTTCTT-CSCBCBSSCCSSCCBCCEECCCCSSSGGG-CHHHHHHHHHHHHHHHHHHHH-----HCH-HHHHSCEEEECCC
T ss_pred chhhhh-cccccccCcchHHHHHHHHHHhCCCcccc-hhhhhHHHHHHHHHHHHHHhc-----cCc-ccCcceEEEeCCc
Confidence 777777 43221 11110000111111111111111 45679999999999999 87 777 46 66999 9
Q ss_pred ccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcccCCcCccHH--HHHHHHHHhC-CcEEEEe-cCCCC
Q psy11993 547 LVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTIDDKVG--AAISMTYITG-QPIVFVG-TGQTY 613 (630)
Q Consensus 547 ~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK~D~~~~~~G--~~ls~~~~~g-~PI~fvg-~Gq~v 613 (630)
++++|.. ...+.+.+.++ +++.+|+|.-.. +..- .+..++...+ .-|.++. .|.-+
T Consensus 270 ts~LD~~--~~~l~~l~~~~-------~~tviiVth~~~--~~l~~~~~~~~~dr~~~~~vi~l~k~G~iv 329 (460)
T 2npi_A 270 ISQLDEN--LAELHHIIEKL-------NVNIMLVLCSET--DPLWEKVKKTFGPELGNNNIFFIPKLDGVS 329 (460)
T ss_dssp GGGSCSS--CHHHHHHHHHT-------TCCEEEEECCSS--CTHHHHHHHHHHHHHCGGGEEEECCCTTCC
T ss_pred ccccChh--HHHHHHHHHHh-------CCCEEEEEccCc--hhhhHHHHHHhcccccCCEEEEEeCCCcEE
Confidence 9998865 33344444332 466778876221 0011 2333333211 1277787 77665
No 81
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.04 E-value=8.4e-11 Score=139.16 Aligned_cols=48 Identities=23% Similarity=0.131 Sum_probs=44.7
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEee
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAA 446 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~ 446 (630)
.+|++++|.+..| ++++|+|||||||||+++.|++.+.++.|+|.+.+
T Consensus 687 ~iL~dVSl~I~~G--eivaIiGpNGSGKSTLLklLaGll~P~sG~I~~~~ 734 (986)
T 2iw3_A 687 PQITDINFQCSLS--SRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHE 734 (986)
T ss_dssp CSEEEEEEEEETT--CEEEECSCCCHHHHHHHHHHTTSSCCSEEEEEECT
T ss_pred eeeeccEEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEcC
Confidence 4789999999999 99999999999999999999999999999998853
No 82
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=98.98 E-value=1.1e-10 Score=111.07 Aligned_cols=139 Identities=9% Similarity=0.008 Sum_probs=76.1
Q ss_pred hhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccCCCcCCcchhhh
Q psy11993 401 DALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHPAAKHGGREMV 480 (630)
Q Consensus 401 ~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~~~~~tv~env 480 (630)
+++|.+.+| ++++|+|||||||||+++.+. ++.. +...| .++ ..+.+.... .
T Consensus 1 ~vsl~i~~g--ei~~l~G~nGsGKSTl~~~~~------~~~~-~~~~d--------~~~---g~~~~~~~~--------~ 52 (171)
T 4gp7_A 1 SMKLTIPEL--SLVVLIGSSGSGKSTFAKKHF------KPTE-VISSD--------FCR---GLMSDDEND--------Q 52 (171)
T ss_dssp CEEEEEESS--EEEEEECCTTSCHHHHHHHHS------CGGG-EEEHH--------HHH---HHHCSSTTC--------G
T ss_pred CccccCCCC--EEEEEECCCCCCHHHHHHHHc------cCCe-EEccH--------HHH---HHhcCcccc--------h
Confidence 367788888 999999999999999999843 1111 12222 122 222211100 0
Q ss_pred HhhhccCCCCHHHHHHHHHHHhhhcCCCeeee---ccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCccHHHH--
Q psy11993 481 QLFEKGYGKDPAEIAFRAISHARDMHIDVVLI---DTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQ-- 555 (630)
Q Consensus 481 ~l~~~~~~~d~~~ia~~ai~~a~~~~~D~vlI---DTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~Dav~q-- 555 (630)
.+... ..+............++..++- ..+|+++++..++++|. .+| .+|++|||+.++|...+
T Consensus 53 ~~~~~-----~~~~~~~~~~~~~~~g~~~~~~~~~~~s~g~~qrv~iAral~-----~~p-~~lllDEPt~~Ld~~~~~R 121 (171)
T 4gp7_A 53 TVTGA-----AFDVLHYIVSKRLQLGKLTVVDATNVQESARKPLIEMAKDYH-----CFP-VAVVFNLPEKVCQERNKNR 121 (171)
T ss_dssp GGHHH-----HHHHHHHHHHHHHHTTCCEEEESCCCSHHHHHHHHHHHHHTT-----CEE-EEEEECCCHHHHHHHHHTC
T ss_pred hhHHH-----HHHHHHHHHHHHHhCCCeEEEECCCCCHHHHHHHHHHHHHcC-----CcE-EEEEEeCCHHHHHHHHhcc
Confidence 01000 0000111111112234444332 23777888888888888 777 57779999999987633
Q ss_pred -------------HHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 556 -------------LVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 556 -------------l~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
...+.+.+.++.. .+.+.|++|+
T Consensus 122 ~~~~~~~~vi~~~~~~l~~~l~~l~~----~g~tvi~vtH 157 (171)
T 4gp7_A 122 TDRQVEEYVIRKHTQQMKKSIKGLQR----EGFRYVYILN 157 (171)
T ss_dssp SSCCCCHHHHHHHHHHHHHHSTTHHH----HTCSEEEEEC
T ss_pred cCCCCCHHHHHHHHHHhhhhhhhHHh----cCCcEEEEeC
Confidence 2333344433322 2577788887
No 83
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=98.95 E-value=9.6e-10 Score=116.93 Aligned_cols=177 Identities=22% Similarity=0.298 Sum_probs=97.3
Q ss_pred CCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCc---cHHHHHHHHHhhhcccCCCcCCcchhhhHhhhc
Q psy11993 409 GRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRA---GAVEQLRTHVRHLCSLHPAAKHGGREMVQLFEK 485 (630)
Q Consensus 409 g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~---ga~eQLr~~~~~l~~~~~~~~~tv~env~l~~~ 485 (630)
+++.+|+|+|++||||||++..|+..+...+.+|.++++|+... ++..+-+.....+... .++.+...
T Consensus 77 ~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~Dp~~~~~~g~~l~d~~~~~~~~~~---------~~~~i~~~ 147 (355)
T 3p32_A 77 GNAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVDPSSTRTGGSILGDKTRMARLAVH---------PNAYIRPS 147 (355)
T ss_dssp CCSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC----------------CHHHHTC---------TTEEEECC
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecCCCCCcccchhccchhhHHhhccC---------CCeeEEEC
Confidence 34589999999999999999999999988899999999996433 2221111111111100 01111111
Q ss_pred cCCCC---HHHHHHHHHHHhhhcCCCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCccHHHHHHHHHHH
Q psy11993 486 GYGKD---PAEIAFRAISHARDMHIDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQLVKFNNA 562 (630)
Q Consensus 486 ~~~~d---~~~ia~~ai~~a~~~~~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~Dav~ql~~f~~~ 562 (630)
..+.. ......+++......+++++++||+|..+....+ . ...|.+++|.++..+.+. . .+...
T Consensus 148 ~~~~~~~~~~~~t~d~i~~~~~~~~~~iiiDTpGi~~~~~~~----~-----~~aD~vl~V~d~~~~~~~-~---~l~~~ 214 (355)
T 3p32_A 148 PTSGTLGGVTRATRETVVLLEAAGFDVILIETVGVGQSEVAV----A-----NMVDTFVLLTLARTGDQL-Q---GIKKG 214 (355)
T ss_dssp C--CCHHHHHHHHHHHHHHHHHTTCCEEEEEECSCSSHHHHH----H-----TTCSEEEEEEESSTTCTT-T---TCCTT
T ss_pred CCCccccchhHHHHHHHHHHhhCCCCEEEEeCCCCCcHHHHH----H-----HhCCEEEEEECCCCCccH-H---HHHHh
Confidence 11111 1223344555566678999999999965432221 1 456889888888665432 1 00000
Q ss_pred HhhcccCCCCCCeeEEEEcccCCcCccHHHHH------HHHHHh-------CCcEEEEe--cCCCCccC
Q psy11993 563 MADHSLSDNPHLIDGIVLTKFDTIDDKVGAAI------SMTYIT-------GQPIVFVG--TGQTYTDL 616 (630)
Q Consensus 563 l~~~~~~~~~~~i~gIIlTK~D~~~~~~G~~l------s~~~~~-------g~PI~fvg--~Gq~v~DL 616 (630)
+ . .....+|+||+|.. ...+... ...... +.||.+++ +|+.+.+|
T Consensus 215 ~---~-----~~p~ivVlNK~Dl~-~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L 274 (355)
T 3p32_A 215 V---L-----ELADIVVVNKADGE-HHKEARLAARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAEL 274 (355)
T ss_dssp S---G-----GGCSEEEEECCCGG-GHHHHHHHHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHH
T ss_pred H---h-----hcCCEEEEECCCCc-ChhHHHHHHHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHH
Confidence 1 0 12558999999975 3333211 111111 57888876 46665543
No 84
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=98.94 E-value=1.5e-10 Score=114.48 Aligned_cols=142 Identities=11% Similarity=0.029 Sum_probs=77.1
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccCCCcCCcc
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHPAAKHGG 476 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~~~~~tv 476 (630)
.+|+++ .+| ++++|+|||||||||+++.|+++ .+..|+|...... +.. . .++....++.+. +
T Consensus 14 ~~l~~i----~~G--e~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~~~~~~--~~~-~-~~~~~ig~v~q~---~---- 75 (208)
T 3b85_A 14 HYVDAI----DTN--TIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVSRIILT--RPA-V-EAGEKLGFLPGT---L---- 75 (208)
T ss_dssp HHHHHH----HHC--SEEEEECCTTSSTTHHHHHHHHH-HHHTTSCSEEEEE--ECS-C-CTTCCCCSSCC---------
T ss_pred HHHHhc----cCC--CEEEEECCCCCCHHHHHHHHhcC-CCcCCeeeeEEec--CCc-h-hhhcceEEecCC---H----
Confidence 356654 567 89999999999999999999999 9999988532111 100 0 111112222221 1
Q ss_pred hhhh-Hhh----hccCCCCHHHHHHHHHHHhhhcCCCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCcc
Q psy11993 477 REMV-QLF----EKGYGKDPAEIAFRAISHARDMHIDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNE 551 (630)
Q Consensus 477 ~env-~l~----~~~~~~d~~~ia~~ai~~a~~~~~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~D 551 (630)
.+|+ .+. ...........+.+++ .. ++ +++++..++++|. .+| .+|++|||+++
T Consensus 76 ~enl~~~~~~~~~~~~~~~~~~~~~~~l---~~-gl---------Gq~qrv~lAraL~-----~~p-~lllLDEPts~-- 134 (208)
T 3b85_A 76 NEKIDPYLRPLHDALRDMVEPEVIPKLM---EA-GI---------VEVAPLAYMRGRT-----LND-AFVILDEAQNT-- 134 (208)
T ss_dssp ----CTTTHHHHHHHTTTSCTTHHHHHH---HT-TS---------EEEEEGGGGTTCC-----BCS-EEEEECSGGGC--
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHH---Hh-CC---------chHHHHHHHHHHh-----cCC-CEEEEeCCccc--
Confidence 3344 221 1111100011122222 22 22 8999999999988 788 67779999999
Q ss_pred HHHHHHHHHHHHhhcccCCCCCCeeEEEEcc-cCCc
Q psy11993 552 AVDQLVKFNNAMADHSLSDNPHLIDGIVLTK-FDTI 586 (630)
Q Consensus 552 av~ql~~f~~~l~~~~~~~~~~~i~gIIlTK-~D~~ 586 (630)
. ...+.+.+.++ . .+.+.| +|+ ++..
T Consensus 135 ~---~~~l~~~l~~l-~----~g~tii-vtHd~~~~ 161 (208)
T 3b85_A 135 T---PAQMKMFLTRL-G----FGSKMV-VTGDITQV 161 (208)
T ss_dssp C---HHHHHHHHTTB-C----TTCEEE-EEEC----
T ss_pred c---HHHHHHHHHHh-c----CCCEEE-EECCHHHH
Confidence 2 23344455554 2 245556 777 4443
No 85
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.93 E-value=9.7e-11 Score=120.28 Aligned_cols=150 Identities=14% Similarity=0.048 Sum_probs=79.4
Q ss_pred eEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccC-CCcCCcchhhhHhhhccCCCC
Q psy11993 412 FVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLH-PAAKHGGREMVQLFEKGYGKD 490 (630)
Q Consensus 412 ~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~-~~~~~tv~env~l~~~~~~~d 490 (630)
..++|||||||||||+++.|++.+.+..|+|.+.+.+.-+... +....++.+.. ..+.+|+.+++.+........
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~----~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~ 78 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVE----IKAIGHVIEEGGVKMKLTVIDTPGFGDQINNEN 78 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCS----CCEEEESCC----CCEEEEECCCC--CCSBCTT
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCccee----eeeeEEEeecCCCcCCceEEechhhhhhcccHH
Confidence 4789999999999999999999999999999998876522110 11122222221 244678888887754333222
Q ss_pred HHHHHHHHHHHhhhcCCCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCccHHHHHHHHHHHHhhcccCC
Q psy11993 491 PAEIAFRAISHARDMHIDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQLVKFNNAMADHSLSD 570 (630)
Q Consensus 491 ~~~ia~~ai~~a~~~~~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~Dav~ql~~f~~~l~~~~~~~ 570 (630)
......+.+. ..-.+...-..+|+++++..++++++ .++++++|+.|++..+. . +-+.+. .
T Consensus 79 ~~~~i~~~~~---~~~~~~~~~~LS~G~~qrv~iaRal~---------~lllldep~~gL~~lD~-~-~l~~L~---~-- 139 (270)
T 3sop_A 79 CWEPIEKYIN---EQYEKFLKEEVNIARKKRIPDTRVHC---------CLYFISPTGHSLRPLDL-E-FMKHLS---K-- 139 (270)
T ss_dssp CSHHHHHHHH---HHHHHHHHHHSCTTCCSSCCCCSCCE---------EEEEECCCSSSCCHHHH-H-HHHHHH---T--
T ss_pred HHHHHHHHHH---HHHHhhhHHhcCcccchhhhhheeee---------eeEEEecCCCcCCHHHH-H-HHHHHH---h--
Confidence 1111112211 10012234467899988777776554 36778888899988773 2 222232 1
Q ss_pred CCCCeeEEEEcccCCc
Q psy11993 571 NPHLIDGIVLTKFDTI 586 (630)
Q Consensus 571 ~~~~i~gIIlTK~D~~ 586 (630)
.....+|+||.|..
T Consensus 140 --~~~vI~Vi~K~D~l 153 (270)
T 3sop_A 140 --VVNIIPVIAKADTM 153 (270)
T ss_dssp --TSEEEEEETTGGGS
T ss_pred --cCcEEEEEeccccC
Confidence 12446788999976
No 86
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=98.91 E-value=1.3e-08 Score=98.08 Aligned_cols=160 Identities=14% Similarity=0.096 Sum_probs=96.6
Q ss_pred eEEEEE-ccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccCCCcCCcchhhhHhhhccCCCC
Q psy11993 412 FVMAFC-GVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHPAAKHGGREMVQLFEKGYGKD 490 (630)
Q Consensus 412 ~vi~lv-GpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~~~~~tv~env~l~~~~~~~d 490 (630)
.+|+|+ +..|+||||++..||..+...|.+|+++++|..... . .+...-.. ++.++... .
T Consensus 2 ~vi~v~s~kgG~GKTt~a~~la~~la~~g~~vlliD~D~~~~~-~----~~~~~~~~-----------~~~~~~~~---~ 62 (206)
T 4dzz_A 2 KVISFLNPKGGSGKTTAVINIATALSRSGYNIAVVDTDPQMSL-T----NWSKAGKA-----------AFDVFTAA---S 62 (206)
T ss_dssp EEEEECCSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTTCHH-H----HHHTTSCC-----------SSEEEECC---S
T ss_pred eEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEECCCCCCH-H----HHHhcCCC-----------CCcEEecC---c
Confidence 578888 456799999999999999999999999999974422 1 12111110 12222111 1
Q ss_pred HHHHHHHHHHHhhhcCCCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCccHHHHHHHHHHHHhhcccCC
Q psy11993 491 PAEIAFRAISHARDMHIDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQLVKFNNAMADHSLSD 570 (630)
Q Consensus 491 ~~~ia~~ai~~a~~~~~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~Dav~ql~~f~~~l~~~~~~~ 570 (630)
....+.+..+. ..||+|+|||+++... ....++. ..|.++++..+.... ..+..+.+.+..+....
T Consensus 63 --~~l~~~l~~l~-~~yD~viiD~~~~~~~--~~~~~l~------~ad~viiv~~~~~~~---~~~~~~~~~l~~~~~~~ 128 (206)
T 4dzz_A 63 --EKDVYGIRKDL-ADYDFAIVDGAGSLSV--ITSAAVM------VSDLVIIPVTPSPLD---FSAAGSVVTVLEAQAYS 128 (206)
T ss_dssp --HHHHHTHHHHT-TTSSEEEEECCSSSSH--HHHHHHH------HCSEEEEEECSCTTT---HHHHHHHHHHHTTSCGG
T ss_pred --HHHHHHHHHhc-CCCCEEEEECCCCCCH--HHHHHHH------HCCEEEEEecCCHHH---HHHHHHHHHHHHHHHhC
Confidence 22334455444 3599999999998732 2222332 246788888775432 23334444454332211
Q ss_pred CCCCeeEEEEcccCCcCccHHHHHHHHHHhCCcEE
Q psy11993 571 NPHLIDGIVLTKFDTIDDKVGAAISMTYITGQPIV 605 (630)
Q Consensus 571 ~~~~i~gIIlTK~D~~~~~~G~~ls~~~~~g~PI~ 605 (630)
....+ ++|+|++|........+.......|.|+.
T Consensus 129 ~~~~~-~vv~N~~~~~~~~~~~~~~~l~~~~~~vl 162 (206)
T 4dzz_A 129 RKVEA-RFLITRKIEMATMLNVLKESIKDTGVKAF 162 (206)
T ss_dssp GCCEE-EEEECSBCTTEEEEHHHHHHHHHHTCCBC
T ss_pred CCCcE-EEEEeccCCCchHHHHHHHHHHHcCCcee
Confidence 12334 99999999653344566677777888775
No 87
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=98.84 E-value=4.9e-08 Score=98.24 Aligned_cols=177 Identities=18% Similarity=0.172 Sum_probs=97.9
Q ss_pred eEEEEE-ccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHH------HHHhhhcccCCCcC--CcchhhhHh
Q psy11993 412 FVMAFC-GVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLR------THVRHLCSLHPAAK--HGGREMVQL 482 (630)
Q Consensus 412 ~vi~lv-GpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr------~~~~~l~~~~~~~~--~tv~env~l 482 (630)
.+|+|+ +..|+||||++..||..+...+.+|+++++|..+......+. .....+.....+.. ....+++.+
T Consensus 3 ~~I~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~l~~~~~~~~l~~~l~~~~~~~~~i~~~~~~l~~ 82 (263)
T 1hyq_A 3 RTITVASGKGGTGKTTITANLGVALAQLGHDVTIVDADITMANLELILGMEGLPVTLQNVLAGEARIDEAIYVGPGGVKV 82 (263)
T ss_dssp EEEEEEESSSCSCHHHHHHHHHHHHHHTTCCEEEEECCCSSSSHHHHTTCCCCCCCHHHHHTTSSCGGGGCEECGGGCEE
T ss_pred eEEEEECCCCCCCHHHHHHHHHHHHHhCCCcEEEEECCCCCCCcchhcCCCCCCCCHHHHHcCCCcHHHhheeCCCCeEE
Confidence 577776 456899999999999999988999999999986544322110 00011100000000 001123333
Q ss_pred hhccCCCCH-----HHHHHHHHHHhhhcCCCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCccHHHHHH
Q psy11993 483 FEKGYGKDP-----AEIAFRAISHARDMHIDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQLV 557 (630)
Q Consensus 483 ~~~~~~~d~-----~~ia~~ai~~a~~~~~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~Dav~ql~ 557 (630)
+......+. .....+.++.+. ..||+|+||++++... .....+. ..|.+++|.++.. ..+..+.
T Consensus 83 lp~~~~~~~~~~~~~~~l~~~l~~l~-~~yD~viiD~~~~~~~--~~~~~~~------~ad~vi~v~~~~~--~~~~~~~ 151 (263)
T 1hyq_A 83 VPAGVSLEGLRKANPEKLEDVLTQIM-ESTDILLLDAPAGLER--SAVIAIA------AAQELLLVVNPEI--SSITDGL 151 (263)
T ss_dssp EECCSCHHHHHHHCHHHHHHHHHHHH-HTCSEEEEECCSSSSH--HHHHHHH------HSSEEEEEECSSH--HHHHHHH
T ss_pred EcCCCCcChhhccChHHHHHHHHHHH-hhCCEEEEeCCCCCCh--HHHHHHH------HCCEEEEEeCCCh--hHHHHHH
Confidence 321110011 122334444444 5799999999987652 2222222 3467888877643 2333444
Q ss_pred HHHHHHhhcccCCCCCCeeEEEEcccCCcCccHHHHHHHHHHhCCcEE
Q psy11993 558 KFNNAMADHSLSDNPHLIDGIVLTKFDTIDDKVGAAISMTYITGQPIV 605 (630)
Q Consensus 558 ~f~~~l~~~~~~~~~~~i~gIIlTK~D~~~~~~G~~ls~~~~~g~PI~ 605 (630)
.+.+.+... ...+.++|+|+++.. .....+-.+....|.|+.
T Consensus 152 ~~~~~l~~~-----~~~~~~vv~N~~~~~-~~~~~~~~~~~~~~~~~~ 193 (263)
T 1hyq_A 152 KTKIVAERL-----GTKVLGVVVNRITTL-GIEMAKNEIEAILEAKVI 193 (263)
T ss_dssp HHHHHHHHH-----TCEEEEEEEEEECTT-THHHHHHHHHHHTTSCEE
T ss_pred HHHHHHHhc-----CCCeeEEEEccCCcc-cccchHHHHHHHhCCCeE
Confidence 444444332 135789999999975 333344455566788864
No 88
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=98.83 E-value=5e-09 Score=122.74 Aligned_cols=65 Identities=11% Similarity=0.060 Sum_probs=47.0
Q ss_pred CeeeeccccchhchHHHHHHHHhhhhhcCC--CeEEEEeccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 508 DVVLIDTAGRMQDNEPLMRALAKLVKVNQP--DLLLFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 508 D~vlIDTaGr~~~~~~L~~aL~kl~~~~~P--d~VLlV~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
+.-+-.+|||++++..|+++|. .+| ..+|++|||+.|+|..++. .+.+.+.++.. .+.+.|++|+
T Consensus 725 ~~~~~~LSGGekQRv~LAraL~-----~~p~~p~lLILDEPTsGLD~~~~~-~l~~lL~~L~~----~G~tVIvisH 791 (842)
T 2vf7_A 725 GQPATELSGGEAQRIKLATELR-----RSGRGGTVYVLDEPTTGLHPADVE-RLQRQLVKLVD----AGNTVIAVEH 791 (842)
T ss_dssp TCCGGGCCHHHHHHHHHHHTTS-----SCCSSCEEEEEECTTTTCCHHHHH-HHHHHHHHHHH----TTCEEEEECC
T ss_pred cCCcccCCHHHHHHHHHHHHHH-----hCCCCCCEEEEECCCCCCCHHHHH-HHHHHHHHHHh----CCCEEEEEcC
Confidence 3346678999999999999888 543 3678899999999977654 33444544432 2567888887
No 89
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=98.83 E-value=2.7e-08 Score=102.89 Aligned_cols=163 Identities=19% Similarity=0.242 Sum_probs=95.2
Q ss_pred CCCeEEEEEccC-CCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHH-----HHhhhcccCCCc---CCcchhh
Q psy11993 409 GRPFVMAFCGVN-GVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRT-----HVRHLCSLHPAA---KHGGREM 479 (630)
Q Consensus 409 g~p~vi~lvGpN-GvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~-----~~~~l~~~~~~~---~~tv~en 479 (630)
.++.+|+|+|+. |+||||++..||..+...+.+|+++++|..+......+.. ....+.....+. ..+..++
T Consensus 90 ~~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLID~D~~~~~l~~~~~~~~~~gl~~~l~~~~~~~~~i~~~~~~~ 169 (286)
T 3la6_A 90 AQNNVLMMTGVSPSIGMTFVCANLAAVISQTNKRVLLIDCDMRKGYTHELLGTNNVNGLSEILIGQGDITTAAKPTSIAK 169 (286)
T ss_dssp TTCCEEEEEESSSSSSHHHHHHHHHHHHHTTTCCEEEEECCTTTCCHHHHHTCCCTTCHHHHHHTSSCTTTTCEECSSTT
T ss_pred CCCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCCEEEEeccCCCCCHHHHhCCCCCCCHHHHccCCCCHHHheeccCCCC
Confidence 345799999875 8999999999999999989999999999976554433211 111111100110 1122245
Q ss_pred hHhhhccCC-CCHHHH-----HHHHHHHhhhcCCCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCccHH
Q psy11993 480 VQLFEKGYG-KDPAEI-----AFRAISHARDMHIDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAV 553 (630)
Q Consensus 480 v~l~~~~~~-~d~~~i-----a~~ai~~a~~~~~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~Dav 553 (630)
+.++..+.. .++.+. ..+.++.++. .||+|+|||++....... ..+. ...|.+++|..+.... .
T Consensus 170 l~vl~~g~~~~~~~ell~~~~l~~ll~~l~~-~yD~VIIDtpp~~~~~da--~~l~-----~~aD~vllVv~~~~~~--~ 239 (286)
T 3la6_A 170 FDLIPRGQVPPNPSELLMSERFAELVNWASK-NYDLVLIDTPPILAVTDA--AIVG-----RHVGTTLMVARYAVNT--L 239 (286)
T ss_dssp EEEECCCSCCSCHHHHHTSHHHHHHHHHHHH-HCSEEEEECCCTTTCTHH--HHHT-----TTCSEEEEEEETTTSB--H
T ss_pred EEEEeCCCCCCCHHHHhchHHHHHHHHHHHh-CCCEEEEcCCCCcchHHH--HHHH-----HHCCeEEEEEeCCCCc--H
Confidence 555443322 234332 3445555543 599999999997653211 1222 2346788887774321 2
Q ss_pred HHHHHHHHHHhhcccCCCCCCeeEEEEcccCCc
Q psy11993 554 DQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTI 586 (630)
Q Consensus 554 ~ql~~f~~~l~~~~~~~~~~~i~gIIlTK~D~~ 586 (630)
..+....+.+... ...+.|+|+|++|..
T Consensus 240 ~~~~~~~~~l~~~-----g~~~~GvVlN~v~~~ 267 (286)
T 3la6_A 240 KEVETSLSRFEQN-----GIPVKGVILNSIFRR 267 (286)
T ss_dssp HHHHHHHHHHHHT-----TCCCCEEEEEEECCC
T ss_pred HHHHHHHHHHHhC-----CCCEEEEEEcCcccc
Confidence 2222232333222 246889999999974
No 90
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=98.82 E-value=6e-10 Score=116.77 Aligned_cols=116 Identities=17% Similarity=0.139 Sum_probs=73.7
Q ss_pred hccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCC--eEEEeecccCCccHHHHHHHHHhhhcccCCCcCCcchhhhHhh
Q psy11993 406 KKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNL--NVLIAACDTFRAGAVEQLRTHVRHLCSLHPAAKHGGREMVQLF 483 (630)
Q Consensus 406 i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~gg--kVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~~~~~tv~env~l~ 483 (630)
+.+| ++++|+|||||||||+++.|++.+.+..| +|.++..|.|-... .. .+|+.++
T Consensus 87 ~~~g--~ivgI~G~sGsGKSTL~~~L~gll~~~~G~~~v~~v~qd~~~~~~-t~-------------------~e~~~~~ 144 (312)
T 3aez_A 87 RPVP--FIIGVAGSVAVGKSTTARVLQALLARWDHHPRVDLVTTDGFLYPN-AE-------------------LQRRNLM 144 (312)
T ss_dssp SCCC--EEEEEECCTTSCHHHHHHHHHHHHHTSTTCCCEEEEEGGGGBCCH-HH-------------------HHHTTCT
T ss_pred CCCC--EEEEEECCCCchHHHHHHHHHhhccccCCCCeEEEEecCccCCcc-cH-------------------HHHHHHH
Confidence 3455 99999999999999999999999988754 68777777642221 11 1111111
Q ss_pred h-cc--CCCCHHHHHHHHHHHhhhcCC-CeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCcc
Q psy11993 484 E-KG--YGKDPAEIAFRAISHARDMHI-DVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNE 551 (630)
Q Consensus 484 ~-~~--~~~d~~~ia~~ai~~a~~~~~-D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~D 551 (630)
. .+ ...+. ..+.+.+..+. .+. +..+-..+|+++++..+++++. .+| .+|+++||+..++
T Consensus 145 ~~~g~~~~~d~-~~~~~~L~~l~-~~~~~~~~~~lS~G~~qRv~~a~al~-----~~p-~ilIlDep~~~~d 208 (312)
T 3aez_A 145 HRKGFPESYNR-RALMRFVTSVK-SGSDYACAPVYSHLHYDIIPGAEQVV-----RHP-DILILEGLNVLQT 208 (312)
T ss_dssp TCTTSGGGBCH-HHHHHHHHHHH-TTCSCEEEEEEETTTTEEEEEEEEEE-----CSC-SEEEEECTTTTCC
T ss_pred HhcCCChHHHH-HHHHHHHHHhC-CCcccCCcccCChhhhhhhhhHHHhc-----cCC-CEEEECCccccCC
Confidence 1 00 01121 22344555555 343 3556678999998877655554 567 5677999988864
No 91
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=98.81 E-value=4.4e-08 Score=100.39 Aligned_cols=161 Identities=16% Similarity=0.147 Sum_probs=93.1
Q ss_pred CCeEEEEEcc-CCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHH-----HHhhhcccCCCc---CCcchhhh
Q psy11993 410 RPFVMAFCGV-NGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRT-----HVRHLCSLHPAA---KHGGREMV 480 (630)
Q Consensus 410 ~p~vi~lvGp-NGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~-----~~~~l~~~~~~~---~~tv~env 480 (630)
++.+|+|+|+ .|+||||++..||..+...+.+|+++++|..+......+.. ....+.....+. ..+..+|+
T Consensus 81 ~~kvI~vts~kgG~GKTt~a~nLA~~lA~~G~rVLLID~D~~~~~l~~~~~~~~~~gl~~~L~~~~~l~~~i~~~~~~~l 160 (271)
T 3bfv_A 81 AVQSIVITSEAPGAGKSTIAANLAVAYAQAGYKTLIVDGDMRKPTQHYIFNLPNNEGLSSLLLNWSTYQDSIISTEIEDL 160 (271)
T ss_dssp CCCEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCSSSCCHHHHTTCCCSSSHHHHHTTSSCHHHHEEECSSTTE
T ss_pred CCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCeEEEEeCCCCCccHHHHcCCCCCCCHHHHhCCCCCHHHcEEeCCCCCE
Confidence 4579999987 58999999999999999999999999999976554322210 011110000000 00112344
Q ss_pred HhhhccC-CCCHHHH-----HHHHHHHhhhcCCCeeeeccccchhc-hHHHHHHHHhhhhhcCCCeEEEEeccccCccHH
Q psy11993 481 QLFEKGY-GKDPAEI-----AFRAISHARDMHIDVVLIDTAGRMQD-NEPLMRALAKLVKVNQPDLLLFVGEALVGNEAV 553 (630)
Q Consensus 481 ~l~~~~~-~~d~~~i-----a~~ai~~a~~~~~D~vlIDTaGr~~~-~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~Dav 553 (630)
.++..+. ..++.+. ..+.++.++ ..||+|+|||++.... +..++...+ |.+++|..+... ..
T Consensus 161 ~vl~~g~~~~~~~ell~~~~l~~ll~~l~-~~yD~VIIDtpp~~~~~d~~~l~~~a--------D~vilVv~~~~~--~~ 229 (271)
T 3bfv_A 161 DVLTSGPIPPNPSELITSRAFANLYDTLL-MNYNFVIIDTPPVNTVTDAQLFSKFT--------GNVVYVVNSENN--NK 229 (271)
T ss_dssp EEECCCSCCSCHHHHHTSHHHHHHHHHHH-HHCSEEEEECCCTTTCSHHHHHHHHH--------CEEEEEEETTSC--CH
T ss_pred EEEECCCCCCCHHHHhChHHHHHHHHHHH-hCCCEEEEeCCCCchHHHHHHHHHHC--------CEEEEEEeCCCC--cH
Confidence 4443322 1234332 334455554 3699999999997653 333332333 677777777432 23
Q ss_pred HHHHHHHHHHhhcccCCCCCCeeEEEEcccCCc
Q psy11993 554 DQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTI 586 (630)
Q Consensus 554 ~ql~~f~~~l~~~~~~~~~~~i~gIIlTK~D~~ 586 (630)
..+..+.+.+... ...+.|+|+|++|..
T Consensus 230 ~~~~~~~~~l~~~-----~~~~~GvVlN~~~~~ 257 (271)
T 3bfv_A 230 DEVKKGKELIEAT-----GAKLLGVVLNRMPKD 257 (271)
T ss_dssp HHHHHHHHHHHTT-----TCEEEEEEEEEECC-
T ss_pred HHHHHHHHHHHhC-----CCCEEEEEEeCCcCC
Confidence 3333333344321 235789999999974
No 92
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=98.80 E-value=3.7e-09 Score=113.86 Aligned_cols=93 Identities=13% Similarity=0.120 Sum_probs=60.7
Q ss_pred cccchhchHHHHHHHHhhhhhcCCC-eEEEEeccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcccCCcCccHHH
Q psy11993 514 TAGRMQDNEPLMRALAKLVKVNQPD-LLLFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTIDDKVGA 592 (630)
Q Consensus 514 TaGr~~~~~~L~~aL~kl~~~~~Pd-~VLlV~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK~D~~~~~~G~ 592 (630)
.|||++++..|+++|. .+|+ .+|++|||++|+|...+. .+.+.+.++.. +.+.|++|+- . .
T Consensus 296 lSgGe~qrl~lA~~l~-----~~~~~~~LlLDEpt~~LD~~~~~-~l~~~L~~l~~-----~~~vi~itH~------~-~ 357 (415)
T 4aby_A 296 ASGGELSRVMLAVSTV-----LGADTPSVVFDEVDAGIGGAAAI-AVAEQLSRLAD-----TRQVLVVTHL------A-Q 357 (415)
T ss_dssp SCHHHHHHHHHHHHHH-----HCCSSSEEEESSTTTTCCHHHHH-HHHHHHHHHTT-----TSEEEEECSC------H-H
T ss_pred cCHhHHHHHHHHHHHH-----hCCCCCEEEEECCCCCCCHHHHH-HHHHHHHHHhC-----CCEEEEEeCc------H-H
Confidence 5999999999999776 4441 477799999999987654 44556666642 5778889972 1 1
Q ss_pred HHHHHHHhCCcEEEE----ecCCCCccCCCCCH----HHHHHHh
Q psy11993 593 AISMTYITGQPIVFV----GTGQTYTDLKSLNA----KAVVNAL 628 (630)
Q Consensus 593 ~ls~~~~~g~PI~fv----g~Gq~v~DL~~~~~----~~~v~~L 628 (630)
++.+ .--+..+ ..|+.+..+..++. ..++++|
T Consensus 358 ~~~~----~d~i~~l~k~~~~G~~~~~~~~l~~~~~~~ei~~~~ 397 (415)
T 4aby_A 358 IAAR----AHHHYKVEKQVEDGRTVSHVRLLTGDERLEEIARML 397 (415)
T ss_dssp HHTT----CSEEEEEEEEEETTEEEEEEEECCSHHHHHHHHHHH
T ss_pred HHhh----cCeEEEEEEeccCCceEEEEEECCchhhHHHHHHHh
Confidence 2222 2356667 77877766555443 4455544
No 93
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=98.78 E-value=1.8e-08 Score=118.83 Aligned_cols=64 Identities=13% Similarity=0.073 Sum_probs=47.3
Q ss_pred eeeeccccchhchHHHHHHHHhhhhhcCC--CeEEEEeccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 509 VVLIDTAGRMQDNEPLMRALAKLVKVNQP--DLLLFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 509 ~vlIDTaGr~~~~~~L~~aL~kl~~~~~P--d~VLlV~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
.-+-.+|||++++..|+++|. .+| ..+|++|||++|+|...+. .+.+.+.++.. .+.+.|++|+
T Consensus 841 ~~~~~LSGGekQRv~LAraL~-----~~p~~p~lLILDEPTsGLD~~~~~-~l~~lL~~L~~----~G~TVIvisH 906 (972)
T 2r6f_A 841 QPATTLSGGEAQRVKLAAELH-----RRSNGRTLYILDEPTTGLHVDDIA-RLLDVLHRLVD----NGDTVLVIEH 906 (972)
T ss_dssp CCGGGCCHHHHHHHHHHHHHS-----SCCCSCEEEEEECTTTTCCHHHHH-HHHHHHHHHHH----TTCEEEEECC
T ss_pred CchhhCCHHHHHHHHHHHHHh-----cCCCCCCEEEEECCCCCCCHHHHH-HHHHHHHHHHh----CCCEEEEEcC
Confidence 345678999999999999998 544 3678899999999987654 34445554432 2577888887
No 94
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=98.76 E-value=2e-09 Score=112.43 Aligned_cols=114 Identities=16% Similarity=0.095 Sum_probs=73.5
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccCCCcCCcc
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHPAAKHGG 476 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~~~~~tv 476 (630)
.+|+++++.+++| ++++|+||||+||||+++.|++++ .|+|.... ++...++..++
T Consensus 114 ~vL~~vsl~i~~G--e~vaIvGpsGsGKSTLl~lL~gl~---~G~I~~~v-------------------~q~~~lf~~ti 169 (305)
T 2v9p_A 114 NALKLWLKGIPKK--NCLAFIGPPNTGKSMLCNSLIHFL---GGSVLSFA-------------------NHKSHFWLASL 169 (305)
T ss_dssp HHHHHHHHTCTTC--SEEEEECSSSSSHHHHHHHHHHHH---TCEEECGG-------------------GTTSGGGGGGG
T ss_pred hhhccceEEecCC--CEEEEECCCCCcHHHHHHHHhhhc---CceEEEEe-------------------cCccccccccH
Confidence 5899999999999 999999999999999999999998 78885321 11111222355
Q ss_pred hh-hhHhhhccCCCCHHHHHHHHHHHhhhcCCCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCccHHH
Q psy11993 477 RE-MVQLFEKGYGKDPAEIAFRAISHARDMHIDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVD 554 (630)
Q Consensus 477 ~e-nv~l~~~~~~~d~~~ia~~ai~~a~~~~~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~Dav~ 554 (630)
++ |+.+.... .. .+.+.++..-..++| ....||+++++ +++|. .+|+.+| ++++|...
T Consensus 170 ~~~ni~~~~~~---~~--~~~~~i~~~L~~gld--g~~LSgGqkQR---ARAll-----~~p~iLl-----Ts~LD~~~ 228 (305)
T 2v9p_A 170 ADTRAALVDDA---TH--ACWRYFDTYLRNALD--GYPVSIDRKHK---AAVQI-----KAPPLLV-----TSNIDVQA 228 (305)
T ss_dssp TTCSCEEEEEE---CH--HHHHHHHHTTTGGGG--TCCEECCCSSC---CCCEE-----CCCCEEE-----EESSCSTT
T ss_pred HHHhhccCccc---cH--HHHHHHHHHhHccCC--ccCcCHHHHHH---HHHHh-----CCCCEEE-----ECCCCHHH
Confidence 54 66553211 11 223334331112345 45679999988 56665 6775444 67777543
No 95
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=98.76 E-value=5.4e-08 Score=101.11 Aligned_cols=162 Identities=15% Similarity=0.179 Sum_probs=91.8
Q ss_pred CCCeEEEEEcc-CCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHH-----HHhhhcccCCCc---CCcchhh
Q psy11993 409 GRPFVMAFCGV-NGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRT-----HVRHLCSLHPAA---KHGGREM 479 (630)
Q Consensus 409 g~p~vi~lvGp-NGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~-----~~~~l~~~~~~~---~~tv~en 479 (630)
.++.+|+|+|+ .|+||||++..||..+...+.+|+++++|..+......+.. ....+.....+. ..+..+|
T Consensus 102 ~~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLID~D~r~~~l~~~~~~~~~~gl~~~L~~~~~l~~~i~~~~~~~ 181 (299)
T 3cio_A 102 TENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFIDADLRRGYSHNLFTVSNEHGLSEYLAGKDELNKVIQHFGKGG 181 (299)
T ss_dssp CSCCEEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEEEECCTTTCCHHHHTTCCCSSSHHHHHTTSSCHHHHCEEETTTT
T ss_pred CCCeEEEEECCCCCCChHHHHHHHHHHHHhCCCcEEEEECCCCCccHHHHcCCCCCCCHHHHCcCCCCHHHhhhccCCCC
Confidence 34579999998 58999999999999999899999999999965554322210 001110000000 0011234
Q ss_pred hHhhhccC-CCCHHHH-----HHHHHHHhhhcCCCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccc-cCccH
Q psy11993 480 VQLFEKGY-GKDPAEI-----AFRAISHARDMHIDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEAL-VGNEA 552 (630)
Q Consensus 480 v~l~~~~~-~~d~~~i-----a~~ai~~a~~~~~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~-~g~Da 552 (630)
+.++..+. ..++.+. ..+.++.++ ..||+|+|||++....... ..+. ...|.+++|..+. ...+.
T Consensus 182 l~vl~~g~~~~~~~ell~~~~l~~ll~~l~-~~yD~VIIDtpp~~~~~d~--~~l~-----~~ad~vilV~~~~~~~~~~ 253 (299)
T 3cio_A 182 FDVITRGQVPPNPSELLMRDRMRQLLEWAN-DHYDLVIVDTPPMLAVSDA--AVVG-----RSVGTSLLVARFGLNTAKE 253 (299)
T ss_dssp EEEECCCSCCSCHHHHHTSHHHHHHHHHHH-HHCSEEEEECCCTTTCTHH--HHHG-----GGCSEEEEEEETTTSCTTH
T ss_pred EEEEECCCCCCCHHHHhCHHHHHHHHHHHH-hCCCEEEEcCCCCchhHHH--HHHH-----HHCCEEEEEEcCCCChHHH
Confidence 44443322 1233322 334455554 4699999999998753221 1122 2246677777663 33333
Q ss_pred HHHHHHHHHHHhhcccCCCCCCeeEEEEcccCCc
Q psy11993 553 VDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTI 586 (630)
Q Consensus 553 v~ql~~f~~~l~~~~~~~~~~~i~gIIlTK~D~~ 586 (630)
+.. +.+.+.+. ...+.|+|+|++|..
T Consensus 254 ~~~---~~~~l~~~-----~~~~~GvVlN~~~~~ 279 (299)
T 3cio_A 254 VSL---SMQRLEQA-----GVNIKGAILNGVIKR 279 (299)
T ss_dssp HHH---HHHHHHHT-----TCCCCCEEEEECCCC
T ss_pred HHH---HHHHHHhC-----CCCeEEEEEeCCccC
Confidence 332 22233221 235779999999975
No 96
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=98.75 E-value=9.3e-08 Score=101.49 Aligned_cols=145 Identities=20% Similarity=0.202 Sum_probs=76.6
Q ss_pred CeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccCCCcCCcchhhhHhhhc-----
Q psy11993 411 PFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHPAAKHGGREMVQLFEK----- 485 (630)
Q Consensus 411 p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~~~~~tv~env~l~~~----- 485 (630)
..+++|+|++||||||+++.|++.+.+.+++|.+++.|++..... +.+++.......+...+.+.+...
T Consensus 74 ~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~~~~~~------g~~l~d~~rm~~~~~~~~~~v~~~~~~~~ 147 (349)
T 2www_A 74 AFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSSCTSG------GSLLGDKTRMTELSRDMNAYIRPSPTRGT 147 (349)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC----------------------CCSTTCTTEEEECC-----
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCCCCCcC------cchhchHHHHHHhcCCCCEEEEecCCccc
Confidence 379999999999999999999999999999999999998654211 011111000000111111111000
Q ss_pred --cCCCCHHHHHHHHHHHhhhcCCCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCccHHHHHHHHHHHH
Q psy11993 486 --GYGKDPAEIAFRAISHARDMHIDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQLVKFNNAM 563 (630)
Q Consensus 486 --~~~~d~~~ia~~ai~~a~~~~~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~Dav~ql~~f~~~l 563 (630)
+...+ ..+++..+...+++++++||+|..+.... +. ...|.+++|.++..+.+. ..+. ..+
T Consensus 148 lgg~tr~----~~~~~~~~~~~~~~~iliDT~Gi~~~~~~----l~-----~~~d~vl~V~d~~~~~~~-~~i~---~~i 210 (349)
T 2www_A 148 LGGVTRT----TNEAILLCEGAGYDIILIETVGVGQSEFA----VA-----DMVDMFVLLLPPAGGDEL-QGIK---RGI 210 (349)
T ss_dssp ----CTT----HHHHHHHHHHTTCSEEEEECCCC--CHHH----HH-----TTCSEEEEEECCC----------------
T ss_pred cccchHH----HHHHHHhhccCCCCEEEEECCCcchhhhh----HH-----hhCCEEEEEEcCCcchhH-HHhH---HHH
Confidence 01111 12233333456899999999996543322 22 356888889888766321 1111 111
Q ss_pred hhcccCCCCCCeeEEEEcccCCc
Q psy11993 564 ADHSLSDNPHLIDGIVLTKFDTI 586 (630)
Q Consensus 564 ~~~~~~~~~~~i~gIIlTK~D~~ 586 (630)
. .....+++||+|..
T Consensus 211 ---l-----~~~~ivVlNK~Dl~ 225 (349)
T 2www_A 211 ---I-----EMADLVAVTKSDGD 225 (349)
T ss_dssp ---C-----CSCSEEEECCCSGG
T ss_pred ---H-----hcCCEEEEeeecCC
Confidence 1 12457899999975
No 97
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=98.75 E-value=6.3e-08 Score=95.64 Aligned_cols=177 Identities=16% Similarity=0.128 Sum_probs=96.4
Q ss_pred eEEEEEcc-CCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHH------HHHhhhcccCCCcC---CcchhhhH
Q psy11993 412 FVMAFCGV-NGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLR------THVRHLCSLHPAAK---HGGREMVQ 481 (630)
Q Consensus 412 ~vi~lvGp-NGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr------~~~~~l~~~~~~~~---~tv~env~ 481 (630)
.+|+|+|. .|+||||++..||..+...+.+|+++++|..+......+. .....+.....+.. .+...++.
T Consensus 3 ~~i~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~l~~~l~~~~~~~~~i~~~~~~~l~ 82 (237)
T 1g3q_A 3 RIISIVSGKGGTGKTTVTANLSVALGDRGRKVLAVDGDLTMANLSLVLGVDDPDVTLHDVLAGEANVEDAIYMTQFDNVY 82 (237)
T ss_dssp EEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTTSCCHHHHTTCCCCSSCHHHHHTTSSCGGGGCEECSSTTEE
T ss_pred eEEEEecCCCCCCHHHHHHHHHHHHHhcCCeEEEEeCCCCCCChhHhcCCCCCCCCHHHHhcCCCCHHHHhhcCCCCCEE
Confidence 67888864 5899999999999999988999999999986443321110 00111110000000 00012333
Q ss_pred hhhccCCCCH-----HHHHHHHHHHhhhcCCCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCccHHHHH
Q psy11993 482 LFEKGYGKDP-----AEIAFRAISHARDMHIDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQL 556 (630)
Q Consensus 482 l~~~~~~~d~-----~~ia~~ai~~a~~~~~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~Dav~ql 556 (630)
++......+. .....+.++.+. ..||+|+||++++... ....+. ...|.++++.++.. ..+..+
T Consensus 83 ~lp~~~~~~~~~~~~~~~l~~~l~~l~-~~yD~viiD~~~~~~~---~~~~~~-----~~ad~vi~v~~~~~--~~~~~~ 151 (237)
T 1g3q_A 83 VLPGAVDWEHVLKADPRKLPEVIKSLK-DKFDFILIDCPAGLQL---DAMSAM-----LSGEEALLVTNPEI--SCLTDT 151 (237)
T ss_dssp EECCCCSHHHHHHCCGGGHHHHHHTTG-GGCSEEEEECCSSSSH---HHHHHH-----TTCSEEEEEECSCH--HHHHHH
T ss_pred EEeCCCccchhhhcCHHHHHHHHHHHH-hcCCEEEEECCCCcCH---HHHHHH-----HHCCeEEEEecCCc--ccHHHH
Confidence 3221000000 112234444444 4699999999987652 222222 34567888887743 233344
Q ss_pred HHHHHHHhhcccCCCCCCeeEEEEcccCCcCccHHHHHHHHHHhCCcEE
Q psy11993 557 VKFNNAMADHSLSDNPHLIDGIVLTKFDTIDDKVGAAISMTYITGQPIV 605 (630)
Q Consensus 557 ~~f~~~l~~~~~~~~~~~i~gIIlTK~D~~~~~~G~~ls~~~~~g~PI~ 605 (630)
..+.+.+.+. ...+.++|+|+++... ....+-.+....|.|+.
T Consensus 152 ~~~~~~l~~~-----~~~~~~vv~N~~~~~~-~~~~~~~~~~~~~~~~~ 194 (237)
T 1g3q_A 152 MKVGIVLKKA-----GLAILGFVLNRYGRSD-RDIPPEAAEDVMEVPLL 194 (237)
T ss_dssp HHHHHHHHHT-----TCEEEEEEEEEETSCT-TCCCHHHHHHHHCSCEE
T ss_pred HHHHHHHHhC-----CCceEEEEEecCCccc-chhHHHHHHHHhCccce
Confidence 4444444332 2357899999999742 22223344555788864
No 98
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=98.75 E-value=3.5e-08 Score=101.51 Aligned_cols=52 Identities=19% Similarity=0.127 Sum_probs=46.4
Q ss_pred hhhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCC-eEEEeeccc
Q psy11993 396 VDILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNL-NVLIAACDT 449 (630)
Q Consensus 396 ~~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~gg-kVlI~~~Dt 449 (630)
+.+|+++++.+.+| ++++|+||||+||||++..||+.+.+..| +|++.+.+.
T Consensus 22 ~~~Ld~i~~~l~~G--~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e~ 74 (296)
T 1cr0_A 22 CTGINDKTLGARGG--EVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEE 74 (296)
T ss_dssp CTTHHHHHCSBCTT--CEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESSS
T ss_pred HHHHHHHhcCCCCC--eEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCcC
Confidence 56789999999999 99999999999999999999999988844 898888764
No 99
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=98.72 E-value=1.8e-08 Score=119.07 Aligned_cols=62 Identities=16% Similarity=0.080 Sum_probs=46.4
Q ss_pred eeccccchhchHHHHHHHHhhhhhcCCC--eEEEEeccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 511 LIDTAGRMQDNEPLMRALAKLVKVNQPD--LLLFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 511 lIDTaGr~~~~~~L~~aL~kl~~~~~Pd--~VLlV~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
.-.+|||++|+..|+++|. .+|. .+|++|||++|+|..++.. +.+.+.++.. .+.+.|++|+
T Consensus 803 ~~~LSGGErQRV~LAraL~-----~~p~~p~LLILDEPTsGLD~~~~~~-L~~lL~~L~~----~G~TVIvI~H 866 (916)
T 3pih_A 803 ATTLSGGEAQRIKLASELR-----KRDTGRTLYILDEPTVGLHFEDVRK-LVEVLHRLVD----RGNTVIVIEH 866 (916)
T ss_dssp STTCCHHHHHHHHHHHHHT-----SCCCSSEEEEEESTTTTCCHHHHHH-HHHHHHHHHH----TTCEEEEECC
T ss_pred ccCCCHHHHHHHHHHHHHh-----hCCCCCCEEEEECCCCCCCHHHHHH-HHHHHHHHHh----cCCEEEEEeC
Confidence 4567999999999999998 4442 6888999999999876543 3445554432 2578888887
No 100
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=98.72 E-value=1.9e-07 Score=94.30 Aligned_cols=185 Identities=14% Similarity=0.149 Sum_probs=97.2
Q ss_pred eEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHH-----HHhhhcc---cCCCc--CCcchhhhH
Q psy11993 412 FVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRT-----HVRHLCS---LHPAA--KHGGREMVQ 481 (630)
Q Consensus 412 ~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~-----~~~~l~~---~~~~~--~~tv~env~ 481 (630)
.+|+|.|..|+||||++..||..+...|.+|+++++|.........+.. ....+.. ..... -.+..+++.
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~la~~G~~VlliD~D~q~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~i~~~~~~l~ 81 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSGLHAMGKTIMVVGCDPKADSTRLLLGGLAQKSVLDTLREEGEDVELDSILKEGYGGIR 81 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEEECTTSCSSHHHHTSCCCCCHHHHHHHHGGGCCHHHHCEECGGGCE
T ss_pred cEEEEecCCCCcHHHHHHHHHHHHHHCCCcEEEEcCCCCCCHHHHhcCCCCcccHHHHHhccCcCCCHHHhhccCCCCee
Confidence 5778889999999999999999999889999999999866443211100 0000000 00000 001123333
Q ss_pred hhhccCCCC-----HHHH--HHHHHHHhh--hcCCCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCccH
Q psy11993 482 LFEKGYGKD-----PAEI--AFRAISHAR--DMHIDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEA 552 (630)
Q Consensus 482 l~~~~~~~d-----~~~i--a~~ai~~a~--~~~~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~Da 552 (630)
++..+.... ..+. ....+..+. ...||+|+|||+|....+. +...+. ....|.++++.++.. ..
T Consensus 82 vl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~yD~iiiD~~~~~~~~~-~~~~~~----~~~aD~viiv~~~~~--~s 154 (269)
T 1cp2_A 82 CVESGGPEPGVGCAGRGIITSINMLEQLGAYTDDLDYVFYDVLGDVVCGG-FAMPIR----EGKAQEIYIVASGEM--MA 154 (269)
T ss_dssp EEECCCCCTTSSCHHHHHHHHHHHHHHTTCCCTTCSEEEEEEECSSCSTT-TTHHHH----TTSCCEEEEEECSSH--HH
T ss_pred EEeCCCchhhccccCcchhhHHHHHHHHHhhccCCCEEEEeCCchhhhhh-hhhhhh----HhhCCEEEEeecCch--hh
Confidence 332211110 1111 111222222 2369999999998754321 111111 124577888887742 23
Q ss_pred HHHHHHHHHHHhhcccCCCCCCeeEEEEcccCCcCccHHHHHHHHHHhCCcEE
Q psy11993 553 VDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTIDDKVGAAISMTYITGQPIV 605 (630)
Q Consensus 553 v~ql~~f~~~l~~~~~~~~~~~i~gIIlTK~D~~~~~~G~~ls~~~~~g~PI~ 605 (630)
+..+..+.+.+..+... ....+.++|+|+++.. ..-..+-.+....|.|+.
T Consensus 155 ~~~~~~~~~~l~~~~~~-~~~~~~gvv~N~~~~~-~~~~~~~~l~~~~~~~v~ 205 (269)
T 1cp2_A 155 LYAANNISKGIQKYAKS-GGVRLGGIICNSRKVA-NEYELLDAFAKELGSQLI 205 (269)
T ss_dssp HHHHHHHHHHHHHHBTT-BBCEEEEEEEECCSSS-CCHHHHHHHHHHHTCCEE
T ss_pred HHHHHHHHHHHHHHHhc-CCCcEEEEEeecCCcc-hhHHHHHHHHHHcCCccc
Confidence 33344444444443221 1124669999999864 233333445566788864
No 101
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=98.71 E-value=4.6e-08 Score=97.90 Aligned_cols=183 Identities=14% Similarity=0.134 Sum_probs=99.3
Q ss_pred eEEEEEccC-CCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHH-------HHhhhcccCC----CcCCcchhh
Q psy11993 412 FVMAFCGVN-GVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRT-------HVRHLCSLHP----AAKHGGREM 479 (630)
Q Consensus 412 ~vi~lvGpN-GvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~-------~~~~l~~~~~----~~~~tv~en 479 (630)
++|+|+|.- |+||||++..||..+...|.+|+++++|.........+.. +...+..... ....+..++
T Consensus 3 ~vi~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~~~~~lg~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 82 (260)
T 3q9l_A 3 RIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFAIGLRNLDLIMGCERRVVYDFVNVIQGDATLNQALIKDKRTEN 82 (260)
T ss_dssp EEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSSCCHHHHTTCGGGCCSCHHHHHTTSSCHHHHCEECSSSTT
T ss_pred eEEEEECCCCCCcHHHHHHHHHHHHHhCCCcEEEEECCCCCCChhHHhCCCCcccCCHHHHhcCCCChHHheeccCCCCC
Confidence 688888654 7999999999999999999999999999855443322110 0001100000 000011123
Q ss_pred hHhhhccCC-----CCHHHHHHHHHHHhhhcCCCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCccHHH
Q psy11993 480 VQLFEKGYG-----KDPAEIAFRAISHARDMHIDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVD 554 (630)
Q Consensus 480 v~l~~~~~~-----~d~~~ia~~ai~~a~~~~~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~Dav~ 554 (630)
+.++..... ... ....+.++.+....||+|+|||+++... ....++ ...|.++++.++.. .++.
T Consensus 83 l~~lp~~~~~~~~~~~~-~~~~~~l~~l~~~~yD~viiD~p~~~~~--~~~~~l------~~ad~vi~v~~~~~--~s~~ 151 (260)
T 3q9l_A 83 LYILPASQTRDKDALTR-EGVAKVLDDLKAMDFEFIVCDSPAGIET--GALMAL------YFADEAIITTNPEV--SSVR 151 (260)
T ss_dssp EEEECCCSCCCTTSSCH-HHHHHHHHHHHHTTCSEEEEECCSSSSH--HHHHHH------HTCSEEEEEECSSH--HHHH
T ss_pred EEEecCCCccchhhCCH-HHHHHHHHHHhccCCCEEEEcCCCCCCH--HHHHHH------HhCCEEEEEecCCh--hHHH
Confidence 333322111 122 2244555555543799999999987643 222222 24577888887742 2344
Q ss_pred HHHHHHHHHhhccc---CCCCCCeeEEEEcccCCcCccHHH---HHHHHHHhCCcEE
Q psy11993 555 QLVKFNNAMADHSL---SDNPHLIDGIVLTKFDTIDDKVGA---AISMTYITGQPIV 605 (630)
Q Consensus 555 ql~~f~~~l~~~~~---~~~~~~i~gIIlTK~D~~~~~~G~---~ls~~~~~g~PI~ 605 (630)
.+..+.+.+..... ...+....++|+|+++......+. +-.+...+|.|+.
T Consensus 152 ~~~~~~~~l~~~~~~~~~~~~~~~~~~v~N~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (260)
T 3q9l_A 152 DSDRILGILASKSRRAENGEEPIKEHLLLTRYNPGRVSRGDMLSMEDVLEILRIKLV 208 (260)
T ss_dssp HHHHHHHHHTTSSHHHHTTCSCCEEEEEEEEECHHHHHTTSSCCHHHHHHHHCSEEE
T ss_pred HHHHHHHHHHHhccccccccCCcceEEEEecCCccccccccccCHHHHHHHhCCceE
Confidence 44444444432211 000124679999999863111111 1345556788875
No 102
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=98.71 E-value=4.6e-08 Score=115.62 Aligned_cols=65 Identities=15% Similarity=0.063 Sum_probs=47.4
Q ss_pred CeeeeccccchhchHHHHHHHHhhhhhcCC--CeEEEEeccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 508 DVVLIDTAGRMQDNEPLMRALAKLVKVNQP--DLLLFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 508 D~vlIDTaGr~~~~~~L~~aL~kl~~~~~P--d~VLlV~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
+..+-.+|||++++..|+++|. .+| ..+|++|||++|+|..... .+.+.+.++.. .+.+.|++|+
T Consensus 858 ~~~~~~LSGGekQRv~LAraL~-----~~p~~p~lLILDEPTsGLD~~~~~-~l~~lL~~L~~----~G~TVIvisH 924 (993)
T 2ygr_A 858 GQPAPTLSGGEAQRVKLASELQ-----KRSTGRTVYILDEPTTGLHFDDIR-KLLNVINGLVD----KGNTVIVIEH 924 (993)
T ss_dssp TCCGGGSCHHHHHHHHHHHHHS-----SCCCSSEEEEEESTTTTCCHHHHH-HHHHHHHHHHH----TTCEEEEECC
T ss_pred cCccccCCHHHHHHHHHHHHHH-----hCCCCCCEEEEECCCCCCCHHHHH-HHHHHHHHHHh----CCCEEEEEcC
Confidence 3346678999999999999998 544 3688899999999987653 34444544432 2577888887
No 103
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=98.70 E-value=9.6e-08 Score=94.67 Aligned_cols=179 Identities=16% Similarity=0.132 Sum_probs=100.0
Q ss_pred CeEEEEEcc-CCCChHHHHHHHHHHHHhc-CCeEEEeecccCCccHHHHHH------HHHhhhcccCCCc-------CCc
Q psy11993 411 PFVMAFCGV-NGVGKSTNLAKICFWLIEN-NLNVLIAACDTFRAGAVEQLR------THVRHLCSLHPAA-------KHG 475 (630)
Q Consensus 411 p~vi~lvGp-NGvGKTTllakLA~~l~~~-ggkVlI~~~Dt~R~ga~eQLr------~~~~~l~~~~~~~-------~~t 475 (630)
+++|+|+++ .|+||||++..||..+... +.+|+++++|..+......+. .....+....... ..+
T Consensus 4 ~~vI~v~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~~~l~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 83 (245)
T 3ea0_A 4 KRVFGFVSAKGGDGGSCIAANFAFALSQEPDIHVLAVDISLPFGDLDMYLSGNTHSQDLADISNASDRLDKSLLDTMVQH 83 (245)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHHTTSTTCCEEEEECCTTTCCGGGGTCSSCCSCCHHHHHHTGGGCCHHHHHHHSEE
T ss_pred CeEEEEECCCCCcchHHHHHHHHHHHHhCcCCCEEEEECCCCCCCHHHHhCCCCCCCCHHHHHhhHhhhhHHHHHHHhEe
Confidence 478999966 5899999999999999988 999999999986333221110 0000000000000 001
Q ss_pred chhhhHhhhccCC------CCHHHHHHHHHHHhhhcCCCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccC
Q psy11993 476 GREMVQLFEKGYG------KDPAEIAFRAISHARDMHIDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVG 549 (630)
Q Consensus 476 v~env~l~~~~~~------~d~~~ia~~ai~~a~~~~~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g 549 (630)
..+++.++..... ..+ ....+.++.+.. .||+|+|||+++.... ...+. ...|.++++.++.
T Consensus 84 ~~~~l~~l~~~~~~~~~~~~~~-~~l~~~l~~l~~-~yD~viiD~p~~~~~~---~~~~l-----~~ad~viiv~~~~-- 151 (245)
T 3ea0_A 84 ISPSLDLIPSPATFEKIVNIEP-ERVSDLIHIAAS-FYDYIIVDFGASIDHV---GVWVL-----EHLDELCIVTTPS-- 151 (245)
T ss_dssp EETTEEEECCCSSHHHHHHCCH-HHHHHHHHHHHH-HCSEEEEEEESSCCTT---HHHHG-----GGCSEEEEEECSS--
T ss_pred cCCCeEEEcCCCChHhhhcCCH-HHHHHHHHHHHh-hCCEEEEeCCCCCchH---HHHHH-----HHCCEEEEEecCc--
Confidence 1122333222111 111 223445555443 6999999999877432 22222 2357888888774
Q ss_pred ccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcccCCcCccHHHHHHHHHHhCCcEEE
Q psy11993 550 NEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTIDDKVGAAISMTYITGQPIVF 606 (630)
Q Consensus 550 ~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK~D~~~~~~G~~ls~~~~~g~PI~f 606 (630)
...+..+..+.+.+..+. .+....++|+|+++.. .... .-.+...+|.|+..
T Consensus 152 ~~~~~~~~~~~~~l~~~~---~~~~~~~~v~N~~~~~-~~~~-~~~~~~~~~~~v~~ 203 (245)
T 3ea0_A 152 LQSLRRAGQLLKLCKEFE---KPISRIEIILNRADTN-SRIT-SDEIEKVIGRPISK 203 (245)
T ss_dssp HHHHHHHHHHHHHHHTCS---SCCSCEEEEEESTTSC-TTSC-HHHHHHHHTSCEEE
T ss_pred HHHHHHHHHHHHHHHHhC---CCccceEEEEecCCCC-CCCC-HHHHHHHhCCCeEE
Confidence 234444455555554332 2345789999999974 2222 23455567888763
No 104
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=98.68 E-value=1.7e-08 Score=97.15 Aligned_cols=130 Identities=12% Similarity=0.068 Sum_probs=73.4
Q ss_pred EEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccCCCcCCcchhhhHhhhccCCCCHH
Q psy11993 413 VMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHPAAKHGGREMVQLFEKGYGKDPA 492 (630)
Q Consensus 413 vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~~~~~tv~env~l~~~~~~~d~~ 492 (630)
.++|+|||||||||++++|++.+. |.+.+.+..... ....+....++.+. .++.+++ +.... ...
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~-----i~~~g~~~~~~~-~~~~~~~ig~~~~~-----~~~~~~~--~~~~~-~~~- 66 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG-----KRAIGFWTEEVR-DPETKKRTGFRIIT-----TEGKKKI--FSSKF-FTS- 66 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG-----GGEEEEEEEEEC-------CCEEEEEE-----TTCCEEE--EEETT-CCC-
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC-----CcCCCEEhhhhc-cccccceeEEEeec-----CcHHHHH--HHhhc-CCc-
Confidence 589999999999999999999984 334444331110 00112222222111 1222222 11100 000
Q ss_pred HHHHHHHHHhhhcCCCeeeeccccchhchHHHHHH-----HHhhhhhcCCCeEEEEec--cccCccHHHHHHHHHHHHhh
Q psy11993 493 EIAFRAISHARDMHIDVVLIDTAGRMQDNEPLMRA-----LAKLVKVNQPDLLLFVGE--ALVGNEAVDQLVKFNNAMAD 565 (630)
Q Consensus 493 ~ia~~ai~~a~~~~~D~vlIDTaGr~~~~~~L~~a-----L~kl~~~~~Pd~VLlV~E--~~~g~Dav~ql~~f~~~l~~ 565 (630)
....+....+.||+++++..++++ |. .+| .++++|| |+.++|...+ ..+.+.+.+
T Consensus 67 -----------~~~~~~~~~~lSgG~~qr~~la~aa~~~~l~-----~~p-~llilDEigp~~~ld~~~~-~~l~~~l~~ 128 (178)
T 1ye8_A 67 -----------KKLVGSYGVNVQYFEELAIPILERAYREAKK-----DRR-KVIIIDEIGKMELFSKKFR-DLVRQIMHD 128 (178)
T ss_dssp -----------SSEETTEEECHHHHHHHHHHHHHHHHHHHHH-----CTT-CEEEECCCSTTGGGCHHHH-HHHHHHHTC
T ss_pred -----------cccccccccCcCHHHHHHHHHHhhccccccc-----cCC-CEEEEeCCCCcccCCHHHH-HHHHHHHhc
Confidence 001123456789999999999996 77 677 4667999 9999986543 334444432
Q ss_pred cccCCCCCCeeEEEEcc
Q psy11993 566 HSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 566 ~~~~~~~~~i~gIIlTK 582 (630)
.+.+.+++|+
T Consensus 129 -------~~~~~i~~~H 138 (178)
T 1ye8_A 129 -------PNVNVVATIP 138 (178)
T ss_dssp -------TTSEEEEECC
T ss_pred -------CCCeEEEEEc
Confidence 2456778886
No 105
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=98.66 E-value=1.6e-08 Score=106.72 Aligned_cols=50 Identities=18% Similarity=0.288 Sum_probs=45.0
Q ss_pred hhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeeccc
Q psy11993 398 ILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDT 449 (630)
Q Consensus 398 iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt 449 (630)
+++++++.+.+| ++++|+|||||||||+++.|++++.++.|.|.+.+.+.
T Consensus 160 ~l~~l~~~i~~g--~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e 209 (330)
T 2pt7_A 160 AISAIKDGIAIG--KNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEE 209 (330)
T ss_dssp HHHHHHHHHHHT--CCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCC
T ss_pred HHhhhhhhccCC--CEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeec
Confidence 567788889888 89999999999999999999999999999999987653
No 106
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=98.65 E-value=4.3e-07 Score=93.02 Aligned_cols=185 Identities=17% Similarity=0.180 Sum_probs=96.8
Q ss_pred eEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHH-----HHHhhhccc-----CCCc--CCcchhh
Q psy11993 412 FVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLR-----THVRHLCSL-----HPAA--KHGGREM 479 (630)
Q Consensus 412 ~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr-----~~~~~l~~~-----~~~~--~~tv~en 479 (630)
.+|+|.|.-|+||||++..||..+...|.+|+++++|.+.......+. .....+... .... -.+..++
T Consensus 3 kvIavs~KGGvGKTT~a~nLA~~La~~G~rVlliD~D~q~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~i~~~~~~ 82 (289)
T 2afh_E 3 RQCAIYGKGGIGKSTTTQNLVAALAEMGKKVMIVGCDPKADSTRLILHSKAQNTIMEMAAEAGTVEDLELEDVLKAGYGG 82 (289)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEECSSSCSSHHHHCCSSCCBHHHHHHTTSSGGGCCHHHHCEECGGG
T ss_pred eEEEEeCCCcCcHHHHHHHHHHHHHHCCCeEEEEecCCCCCHHHHhcCCCCCCcHHHHHhcccccccCCHHHhhccCCCC
Confidence 678888999999999999999999988999999999996544321110 000001000 0000 0011223
Q ss_pred hHhhhccCCC---C--HHHH--HHHHHHHhh--hcCCCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCc
Q psy11993 480 VQLFEKGYGK---D--PAEI--AFRAISHAR--DMHIDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGN 550 (630)
Q Consensus 480 v~l~~~~~~~---d--~~~i--a~~ai~~a~--~~~~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~ 550 (630)
+.++..+... . ..+. ....+..+. ...||+|+|||+|....+... ..+. ....|.++++..+..
T Consensus 83 l~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~yD~ViID~~~~~~~~~~~-~~~~----~~~aD~viiv~~~~~-- 155 (289)
T 2afh_E 83 VKCVESGGPEPGVGCAGRGVITAINFLEEEGAYEDDLDFVFYDVLGDVVCGGFA-MPIR----ENKAQEIYIVCSGEM-- 155 (289)
T ss_dssp CEEEECCCCCTTTCCHHHHHHHHHHHHHHTTCSSTTCSEEEEEEECSSCCTTTT-HHHH----TTCCCEEEEEECSSH--
T ss_pred eEEEeCCCccccccccchhhhHHHHHHHHHHhhccCCCEEEEeCCCccccchhh-hhhh----hhhCCEEEEEecCCH--
Confidence 3333221110 0 1111 112222222 246999999999875432211 1111 134577888877742
Q ss_pred cHHHHHHHHHHHHhhcccCCCCCCeeEEEEcccCCcCccHHHHHHHHHHhCCcEE
Q psy11993 551 EAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTIDDKVGAAISMTYITGQPIV 605 (630)
Q Consensus 551 Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK~D~~~~~~G~~ls~~~~~g~PI~ 605 (630)
.++..+..+.+.+..+... ....+.++|+|+++.. .....+-.+....|.|+.
T Consensus 156 ~s~~~~~~~~~~l~~~~~~-~~~~~~gvv~N~~~~~-~~~~~~~~l~~~~g~~~l 208 (289)
T 2afh_E 156 MAMYAANNISKGIVKYANS-GSVRLGGLICNSRNTD-REDELIIALANKLGTQMI 208 (289)
T ss_dssp HHHHHHHHHHHHHHHHHTT-SCCEEEEEEEECCCCT-THHHHHHHHHHHHTSCEE
T ss_pred HHHHHHHHHHHHHHHHHhc-CCCceEEEEEecCCch-hHHHHHHHHHHHcCcccc
Confidence 2333333333444433221 1234679999999753 222333344556788864
No 107
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=98.62 E-value=2.9e-07 Score=89.76 Aligned_cols=52 Identities=15% Similarity=0.208 Sum_probs=44.8
Q ss_pred hhhhhhhhh-hhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeeccc
Q psy11993 396 VDILRDALE-AKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDT 449 (630)
Q Consensus 396 ~~iL~~i~~-~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt 449 (630)
+..|+++.. .+.+| ++++|+||||+||||++..|++.+.+.+++|++++.+.
T Consensus 9 ~~~Ld~~~~ggi~~G--~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~ 61 (235)
T 2w0m_A 9 ILDFDKLIQGGIPQG--FFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEE 61 (235)
T ss_dssp CHHHHGGGTTSEETT--CEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSS
T ss_pred chHHHHHhcCCCcCC--CEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEccc
Confidence 455666665 56778 89999999999999999999998888899999998876
No 108
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=98.62 E-value=6.2e-08 Score=94.76 Aligned_cols=44 Identities=20% Similarity=0.234 Sum_probs=33.6
Q ss_pred hccCCCeEEEEEccCCCChHHHHHHHHHHHHh-------cCCeEEEeecccCC
Q psy11993 406 KKQGRPFVMAFCGVNGVGKSTNLAKICFWLIE-------NNLNVLIAACDTFR 451 (630)
Q Consensus 406 i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~-------~ggkVlI~~~Dt~R 451 (630)
+++| ++++|+|||||||||++..|++.+.+ .++.+++.+.+.++
T Consensus 22 i~~G--~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~ 72 (231)
T 4a74_A 22 IETQ--AITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFR 72 (231)
T ss_dssp EESS--EEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCC
T ss_pred CCCC--cEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCC
Confidence 4577 99999999999999999999997765 33355555555443
No 109
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=98.61 E-value=4.7e-07 Score=90.72 Aligned_cols=158 Identities=19% Similarity=0.134 Sum_probs=84.6
Q ss_pred CeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccH----------HHHHHHHHhhhcccCCCcCCcchhhh
Q psy11993 411 PFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGA----------VEQLRTHVRHLCSLHPAAKHGGREMV 480 (630)
Q Consensus 411 p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga----------~eQLr~~~~~l~~~~~~~~~tv~env 480 (630)
+.+++++|..||||||++..|+.++. .+.+|+++++|+..... +...+..... +...|.
T Consensus 14 ~~i~~~~GkgGvGKTTl~~~La~~l~-~g~~v~vvd~D~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~ 82 (262)
T 1yrb_A 14 SMIVVFVGTAGSGKTTLTGEFGRYLE-DNYKVAYVNLDTGVKELPYEPSIDVREFVTVEEIMRE----------GYGPNG 82 (262)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHT-TTSCEEEEECCSSCSCCSSCCSEEGGGTCCHHHHHTT----------TCCHHH
T ss_pred eEEEEEeCCCCCCHHHHHHHHHHHHH-CCCeEEEEeCCCCccccCCCCCCChhhcccHHHHhhc----------cCCCCC
Confidence 47899999999999999999999999 88999999999853221 0000100000 000111
Q ss_pred Hhhhcc-CCCCHHHHHHHHHHHhhhcCCCeeeeccccchhchH--HHHHHHHhhhhhcCCCeEEEEeccccCccHHHHHH
Q psy11993 481 QLFEKG-YGKDPAEIAFRAISHARDMHIDVVLIDTAGRMQDNE--PLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQLV 557 (630)
Q Consensus 481 ~l~~~~-~~~d~~~ia~~ai~~a~~~~~D~vlIDTaGr~~~~~--~L~~aL~kl~~~~~Pd~VLlV~E~~~g~Dav~ql~ 557 (630)
.+.... ..........+.++.+. .++|++++||+|...... .+...+...+ .. +.++++.|+....+..+...
T Consensus 83 ~~~~~~~~~~~~~~~l~~~l~~~~-~~~d~iiiDtpG~~~~~~~~~l~~~~~~~~--~~-~~iv~vvD~~~~~~~~~~~~ 158 (262)
T 1yrb_A 83 AIVESYDRLMEKFNEYLNKILRLE-KENDYVLIDTPGQMETFLFHEFGVRLMENL--PY-PLVVYISDPEILKKPNDYCF 158 (262)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHH-HHCSEEEEECCSSHHHHHHSHHHHHHHHTS--SS-CEEEEEECGGGCCSHHHHHH
T ss_pred cEEecHHHHhhhHHHHHHHHHHHh-hcCCEEEEeCCCccchhhhhhhHHHHHHHH--hh-ceEEeccchhhhcCHHHHHH
Confidence 111000 00011122233444333 358999999999764311 1122222222 34 67788888877666554332
Q ss_pred HHHHHHhhcccCCCCCCeeEEEEcccCCc
Q psy11993 558 KFNNAMADHSLSDNPHLIDGIVLTKFDTI 586 (630)
Q Consensus 558 ~f~~~l~~~~~~~~~~~i~gIIlTK~D~~ 586 (630)
.+......... ......+|+||+|..
T Consensus 159 ~~~~~~~~~~~---~~~p~~iv~NK~D~~ 184 (262)
T 1yrb_A 159 VRFFALLIDLR---LGATTIPALNKVDLL 184 (262)
T ss_dssp HHHHHHHHHHH---HTSCEEEEECCGGGC
T ss_pred HHHHHHHHhcc---cCCCeEEEEeccccc
Confidence 22111110000 012346899999975
No 110
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=98.61 E-value=4.4e-07 Score=93.76 Aligned_cols=182 Identities=18% Similarity=0.113 Sum_probs=100.3
Q ss_pred CCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHH-----HHhhhcc------cCCCc--CCcc
Q psy11993 410 RPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRT-----HVRHLCS------LHPAA--KHGG 476 (630)
Q Consensus 410 ~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~-----~~~~l~~------~~~~~--~~tv 476 (630)
++.+|+|+|.-|+||||++..||..+...|.+|+++++|...... ..+.. ....+.. ..... -...
T Consensus 40 ~~~vI~v~~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~~~~~-~~l~~~~~~~l~d~l~~~~~~~~~~~~~~~i~~~ 118 (307)
T 3end_A 40 GAKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQIGCDPKHDST-FTLTGSLVPTVIDVLKDVDFHPEELRPEDFVFEG 118 (307)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEESSSCCTT-HHHHTSCCCCHHHHHHHTTSCGGGCCHHHHCEEC
T ss_pred CceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEEeCCCCCCHH-HHhCccCCCCHHHHHhhccccccCCCHHHhhccC
Confidence 348999999999999999999999999999999999999854322 12210 0000000 00000 0012
Q ss_pred hhhhHhhhccC-----CCC-H-HHHHHHHHHHh-hhcCCCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEecccc
Q psy11993 477 REMVQLFEKGY-----GKD-P-AEIAFRAISHA-RDMHIDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALV 548 (630)
Q Consensus 477 ~env~l~~~~~-----~~d-~-~~ia~~ai~~a-~~~~~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~ 548 (630)
.+++.++..+. +.. . .......++.. ....||+|+|||+++...... ..+. ...|.+++|.++..
T Consensus 119 ~~~l~vlp~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~yD~ViiD~p~~~~~~~~--~~~l-----~~aD~viiv~~~~~ 191 (307)
T 3end_A 119 FNGVMCVEAGGPPAGTGCGGYVVGQTVKLLKQHHLLDDTDVVIFDVLGDVVCGGF--AAPL-----QHADQAVVVTANDF 191 (307)
T ss_dssp GGGCEEEECCCCCSSSSCTTHHHHHHHHHHHHTTTTSSCSEEEEEECCSSCCGGG--GGGG-----GTCSEEEEEECSSH
T ss_pred CCCceEEECCCcccccccchhhhHHHHHHHHhhhccccCCEEEEeCCCccchHHH--HHHH-----HHCCEEEEEecCcH
Confidence 23344432111 111 1 11112233321 234699999999887643211 0111 34578888887742
Q ss_pred CccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcccCCcCccHHHHHHHHHHhCCcEEE
Q psy11993 549 GNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTIDDKVGAAISMTYITGQPIVF 606 (630)
Q Consensus 549 g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK~D~~~~~~G~~ls~~~~~g~PI~f 606 (630)
.++..+..+.+.+..+.. .....+.|+|+|+++.. ..+-.+....|.|+.-
T Consensus 192 --~s~~~~~~~~~~l~~~~~-~~~~~~~gvV~N~~~~~----~~~~~~~~~~g~~v~~ 242 (307)
T 3end_A 192 --DSIYAMNRIIAAVQAKSK-NYKVRLAGCVANRSRAT----DEVDRFCKETNFRRLA 242 (307)
T ss_dssp --HHHHHHHHHHHHHHTTTT-TCCCEEEEEEEESCSCC----HHHHHHHHHHTCCEEE
T ss_pred --HHHHHHHHHHHHHHHhhh-cCCCceEEEEEecCCcH----HHHHHHHHHcCCCcee
Confidence 234444444445544321 12345678999999863 2244455677888764
No 111
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=98.61 E-value=1.5e-07 Score=95.18 Aligned_cols=182 Identities=15% Similarity=0.036 Sum_probs=95.4
Q ss_pred CeEEEEEc-cCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhh-hcccCCC-cCCcchhhhHhhhccC
Q psy11993 411 PFVMAFCG-VNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRH-LCSLHPA-AKHGGREMVQLFEKGY 487 (630)
Q Consensus 411 p~vi~lvG-pNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~-l~~~~~~-~~~tv~env~l~~~~~ 487 (630)
+.+|+|++ ..|+||||++..||..+...|.+|+++++|....+....+...... +...... +..+..+++.++..+.
T Consensus 18 ~~vI~v~s~kGGvGKTT~a~nLA~~la~~G~~VlliD~D~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~vlp~~~ 97 (262)
T 2ph1_A 18 KSRIAVMSGKGGVGKSTVTALLAVHYARQGKKVGILDADFLGPSIPILFGLRNARIAVSAEGLEPVLTQKYGIKVMSMQF 97 (262)
T ss_dssp SCEEEEECSSSCTTHHHHHHHHHHHHHHTTCCEEEEECCSSCCHHHHHTTCCSCCCEEETTEEECEECTTTCCEEECGGG
T ss_pred CeEEEEEcCCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCCCCHHHHhcCCCccccccccCccccccCCCCeEEEeccc
Confidence 36888885 5589999999999999998899999999999764432221100000 0000000 0000112233222111
Q ss_pred C----------CC--HHHHHHHHHHHhhhcCCCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCccHHHH
Q psy11993 488 G----------KD--PAEIAFRAISHARDMHIDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQ 555 (630)
Q Consensus 488 ~----------~d--~~~ia~~ai~~a~~~~~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~Dav~q 555 (630)
. .. ......+.++.+....||+|+|||+++.........++. ..|.+++|.++.... +..
T Consensus 98 ~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~yD~ViID~pp~~~~~~~~~~~~~------~aD~viiv~~~~~~s--~~~ 169 (262)
T 2ph1_A 98 LLPKENTPVIWRGPLIAGMIREFLGRVAWGELDHLLIDLPPGTGDAPLTVMQDA------KPTGVVVVSTPQELT--AVI 169 (262)
T ss_dssp GSTTCSSCCCCCSHHHHHHHHHHHHSBCCCSCSEEEEECCSSSSSHHHHHHHHH------CCSEEEEEECSSSCC--HHH
T ss_pred cCCCcccchhhcCchHHHHHHHHHHHhhccCCCEEEEECcCCCchHHHHHHhhc------cCCeEEEEecCccch--HHH
Confidence 0 01 112233333333225799999999998753211111111 347788887775431 222
Q ss_pred HHHHHHHHhhcccCCCCCCeeEEEEcccCCcC------cc---HHHHHHHHHHhCCcEE
Q psy11993 556 LVKFNNAMADHSLSDNPHLIDGIVLTKFDTID------DK---VGAAISMTYITGQPIV 605 (630)
Q Consensus 556 l~~f~~~l~~~~~~~~~~~i~gIIlTK~D~~~------~~---~G~~ls~~~~~g~PI~ 605 (630)
+..+.+.+.++ ...+-|+|+|++|..+ .. ...+-.+...+|.|+.
T Consensus 170 ~~~~~~~l~~~-----~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 223 (262)
T 2ph1_A 170 VEKAINMAEET-----NTSVLGLVENMSYFVCPNCGHKSYIFGEGKGESLAKKYNIGFF 223 (262)
T ss_dssp HHHHHHHHHTT-----TCCEEEEEETTCCEECTTTCCEECTTCCCCHHHHHHHTTCSEE
T ss_pred HHHHHHHHHhC-----CCCEEEEEECCCccCCcccccccccccccHHHHHHHHcCCCeE
Confidence 33333333322 2357789999987411 01 1124455667788854
No 112
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=98.60 E-value=1.9e-08 Score=95.10 Aligned_cols=50 Identities=14% Similarity=-0.027 Sum_probs=45.7
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeeccc
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDT 449 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt 449 (630)
.++++++|.+.+| ++++|+|||||||||+++.|++.+ +..|.|.+.+.++
T Consensus 21 ~~l~~vsl~i~~G--e~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~~~g~~i 70 (158)
T 1htw_A 21 FAEILLKLHTEKA--IMVYLNGDLGAGKTTLTRGMLQGI-GHQGNVKSPTYTL 70 (158)
T ss_dssp HHHHHHHHCCSSC--EEEEEECSTTSSHHHHHHHHHHHT-TCCSCCCCCTTTC
T ss_pred HHHhccccccCCC--CEEEEECCCCCCHHHHHHHHHHhC-CCCCeEEECCEee
Confidence 4788899999999 999999999999999999999999 9999998877665
No 113
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=98.59 E-value=2e-09 Score=104.76 Aligned_cols=117 Identities=20% Similarity=0.179 Sum_probs=65.1
Q ss_pred eEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccCCCcCCcchhhhHhh--------
Q psy11993 412 FVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHPAAKHGGREMVQLF-------- 483 (630)
Q Consensus 412 ~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~~~~~tv~env~l~-------- 483 (630)
++++|+|||||||||++++|++++. ..| |.+.+.++. +++.+...++..++... ..+.++.-+
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g~~~-~~G-i~~~g~~~~------~~~~~~~~ig~~~~~~~-g~~~~l~~~~~~~~~~~ 72 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASEVLK-SSG-VPVDGFYTE------EVRQGGRRIGFDVVTLS-GTRGPLSRVGLEPPPGK 72 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHHH-HTT-CCCEEEECC------EEETTSSEEEEEEEETT-SCEEEEEECCCCCCSSS
T ss_pred CEEEEECCCCChHHHHHHHHHhhcc-cCC-EEEcCEecc------hhHhhhceEEEEEEecc-cceehhhcccccCCccc
Confidence 6899999999999999999999998 667 776665441 22222333332211100 000111000
Q ss_pred ----hccCCCCHHHH---HHHHHHH---hhhcCCCeeeeccccchhc-hHHHHHHHHhhhhhcCC
Q psy11993 484 ----EKGYGKDPAEI---AFRAISH---ARDMHIDVVLIDTAGRMQD-NEPLMRALAKLVKVNQP 537 (630)
Q Consensus 484 ----~~~~~~d~~~i---a~~ai~~---a~~~~~D~vlIDTaGr~~~-~~~L~~aL~kl~~~~~P 537 (630)
...++.++... +..++.. +...++|++++|++|+++. +...+++|.+++....|
T Consensus 73 ~~~~v~~~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~~~~~ 137 (189)
T 2i3b_A 73 RECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTLSTPGT 137 (189)
T ss_dssp CCEESSSSEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHHHHCSSC
T ss_pred cccccceEEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHHHHHHHhCCCc
Confidence 01122234331 1112222 1245689999999988863 34567777777765445
No 114
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=98.57 E-value=7.7e-09 Score=103.83 Aligned_cols=38 Identities=24% Similarity=0.134 Sum_probs=25.9
Q ss_pred hhhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHH
Q psy11993 396 VDILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWL 435 (630)
Q Consensus 396 ~~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l 435 (630)
..+|++++|.+.+| .+++|+|||||||||+++.|++.+
T Consensus 12 ~~~l~~isl~i~~g--~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 12 DLGTENLYFQSMRP--FLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp -----------CCS--EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ceeecceeccCCCC--EEEEEECCCCCCHHHHHHHHHHHh
Confidence 45789999999988 999999999999999999999987
No 115
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=98.57 E-value=1.3e-07 Score=95.41 Aligned_cols=180 Identities=18% Similarity=0.140 Sum_probs=92.0
Q ss_pred CeEEEEEc-cCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHH-----HHhhhcccCCCcCCcc-hhhhHhh
Q psy11993 411 PFVMAFCG-VNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRT-----HVRHLCSLHPAAKHGG-REMVQLF 483 (630)
Q Consensus 411 p~vi~lvG-pNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~-----~~~~l~~~~~~~~~tv-~env~l~ 483 (630)
+.+|+|++ ..|+||||++..||..+...|.+|+++++|.+. .....+.. ....+... .+...-. .+++.++
T Consensus 6 ~~vI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~-~~~~~l~~~~~~~l~~~l~~~-~~~~~i~~~~~l~vl 83 (257)
T 1wcv_1 6 VRRIALANQKGGVGKTTTAINLAAYLARLGKRVLLVDLDPQG-NATSGLGVRAERGVYHLLQGE-PLEGLVHPVDGFHLL 83 (257)
T ss_dssp CCEEEECCSSCCHHHHHHHHHHHHHHHHTTCCEEEEECCTTC-HHHHHTTCCCSCCHHHHHTTC-CGGGTCEEETTEEEE
T ss_pred CEEEEEEeCCCCchHHHHHHHHHHHHHHCCCCEEEEECCCCc-CHHHHhCCCCCCCHHHHHcCC-CHHHHccccCCEEEE
Confidence 47899985 558999999999999999889999999999853 22211100 00000000 0000000 1233333
Q ss_pred hccCCCCHHHHH-------HHHHHHhhhcCCCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCccHHHHH
Q psy11993 484 EKGYGKDPAEIA-------FRAISHARDMHIDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQL 556 (630)
Q Consensus 484 ~~~~~~d~~~ia-------~~ai~~a~~~~~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~Dav~ql 556 (630)
... ....... ....+.+....||+|+|||+++... ....+|. ..|.++++.++.. ..+..+
T Consensus 84 p~~--~~~~~~~~~l~~~~~~l~~~l~~~~yD~iiiD~pp~~~~--~~~~~l~------~aD~viiv~~~~~--~s~~~~ 151 (257)
T 1wcv_1 84 PAT--PDLVGATVELAGAPTALREALRDEGYDLVLLDAPPSLSP--LTLNALA------AAEGVVVPVQAEY--YALEGV 151 (257)
T ss_dssp CCC--TTHHHHHHHHTTCTTHHHHHCCCTTCSEEEEECCSSCCH--HHHHHHH------HCSEEEEEEESST--HHHHHH
T ss_pred eCC--hhHHHHHHHHhhHHHHHHHHhcccCCCEEEEeCCCCCCH--HHHHHHH------HCCeEEEEecCch--HHHHHH
Confidence 221 1111110 1111112225799999999987642 2222332 2467888877643 233333
Q ss_pred HHHHHHHhhcccCC-CCCCeeEEEEcccCCcCccHHHHHHH-HHHhCCcE
Q psy11993 557 VKFNNAMADHSLSD-NPHLIDGIVLTKFDTIDDKVGAAISM-TYITGQPI 604 (630)
Q Consensus 557 ~~f~~~l~~~~~~~-~~~~i~gIIlTK~D~~~~~~G~~ls~-~~~~g~PI 604 (630)
..+.+.+..+.... ....+.|+|+|+++......-.++.. ...+|.|+
T Consensus 152 ~~~~~~l~~~~~~~~~~~~~~gvv~N~~~~~~~~~~~~~~~l~~~~~~~~ 201 (257)
T 1wcv_1 152 AGLLATLEEVRAGLNPRLRLLGILVTMYDGRTLLAQQVEAQLRAHFGEKV 201 (257)
T ss_dssp HHHHHHHHHHHHHTCTTCEEEEEEEESBCTTCSHHHHHHHHHHHHHGGGB
T ss_pred HHHHHHHHHHHHHhCCCceEEEEEEEeECCCcHHHHHHHHHHHHHccccc
Confidence 33333333322111 12345689999999752222233333 33357665
No 116
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=98.53 E-value=1.8e-07 Score=96.02 Aligned_cols=174 Identities=14% Similarity=0.108 Sum_probs=92.2
Q ss_pred eEEEEEc---cCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccCCCcCCcc------------
Q psy11993 412 FVMAFCG---VNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHPAAKHGG------------ 476 (630)
Q Consensus 412 ~vi~lvG---pNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~~~~~tv------------ 476 (630)
++|+|++ .-|+||||++..||..+...|.+|+++++|+++.. ...+ ...++...+ ..+.
T Consensus 35 ~~i~v~~~s~KGGvGKTT~a~nLA~~la~~G~rVlliD~D~q~~~-~~~l---~~~~~~~~~--~~~l~~~l~~~~~~~~ 108 (298)
T 2oze_A 35 EAIVILNNYFKGGVGKSKLSTMFAYLTDKLNLKVLMIDKDLQATL-TKDL---AKTFKVELP--RVNFYEGLKNGNLASS 108 (298)
T ss_dssp SCEEEEECCSSSSSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHH-HHHH---TTTSCCCCC--SSCHHHHHHHTCCGGG
T ss_pred cEEEEEeccCCCCchHHHHHHHHHHHHHhCCCeEEEEeCCCCCCH-HHHH---HHhccCCCC--cccHHHHHhcCChhhh
Confidence 5777776 78999999999999999988999999999996532 2122 111111100 0000
Q ss_pred ----hhhhHhhhccCCCC-------------HHHHHHHHHHHhhhcCCCeeeeccccchhchHHHHHHHHhhhhhcCCCe
Q psy11993 477 ----REMVQLFEKGYGKD-------------PAEIAFRAISHARDMHIDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDL 539 (630)
Q Consensus 477 ----~env~l~~~~~~~d-------------~~~ia~~ai~~a~~~~~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~ 539 (630)
.+++.++....... ......+.++.+. ..||+|+|||+++... ....+|. ..|.
T Consensus 109 ~~~~~~~l~vlp~~~~~~~~~~l~~~~~~~~~~~~l~~~l~~l~-~~yD~IiiD~pp~~~~--~~~~~l~------~aD~ 179 (298)
T 2oze_A 109 IVHLTDNLDLIPGTFDLMLLPKLTRSWTFENESRLLATLLAPLK-SDYDLIIIDTVPTPSV--YTNNAIV------ASDY 179 (298)
T ss_dssp CEESSSSEEEECCCGGGGGHHHHTTTSCHHHHHTHHHHHHGGGG-GGCSEEEEEECSSCSH--HHHHHHH------HCSE
T ss_pred hcccCCCeEEEeCCchHHHHHHHhhhhccccHHHHHHHHHHHHh-cCCCEEEEECCCCccH--HHHHHHH------HCCe
Confidence 12222222111000 0112334444443 4699999999988643 2223333 2477
Q ss_pred EEEEeccccCccHHHHHHHHHHHHhhcccCC-CCCCeeEEEEcccCCcCccH-HHHHHHHHHhCC
Q psy11993 540 LLFVGEALVGNEAVDQLVKFNNAMADHSLSD-NPHLIDGIVLTKFDTIDDKV-GAAISMTYITGQ 602 (630)
Q Consensus 540 VLlV~E~~~g~Dav~ql~~f~~~l~~~~~~~-~~~~i~gIIlTK~D~~~~~~-G~~ls~~~~~g~ 602 (630)
++++.+|... ++..+..+.+.+......+ ....+.|+|+|++|...... ..+-.+....+.
T Consensus 180 viiv~~~~~~--s~~~~~~~~~~l~~~~~~~~~~~~~~gvv~n~~~~~~~~~~~~~~~~~~~~~~ 242 (298)
T 2oze_A 180 VMIPLQAEEE--STNNIQNYISYLIDLQEQFNPGLDMIGFVPYLVDTDSATIKSNLEELYKQHKE 242 (298)
T ss_dssp EEEEECGGGC--CHHHHHHHHHHHHHHHHHHCTTCEEEEEEEEESCTTCHHHHHHHHHHHHHTTT
T ss_pred EEEEecCcHH--HHHHHHHHHHHHHHHHHHhCCCCeEEEEEEEEECCCcHHHHHHHHHHHHHhcc
Confidence 8888887542 1222222222232211111 12356899999999752112 223334445554
No 117
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=98.53 E-value=1.9e-07 Score=99.20 Aligned_cols=102 Identities=17% Similarity=0.155 Sum_probs=59.6
Q ss_pred CCeeeeccccchhch-----HHHHHHHHhhhhhcCCCeEEEEeccccC--ccHHHHHHHHHHHHhhcccCCCCCCeeEEE
Q psy11993 507 IDVVLIDTAGRMQDN-----EPLMRALAKLVKVNQPDLLLFVGEALVG--NEAVDQLVKFNNAMADHSLSDNPHLIDGIV 579 (630)
Q Consensus 507 ~D~vlIDTaGr~~~~-----~~L~~aL~kl~~~~~Pd~VLlV~E~~~g--~Dav~ql~~f~~~l~~~~~~~~~~~i~gII 579 (630)
.++.++||+|..... ....+.+..+. ..++.+++|.|++.. .+...+...+.... .... .....+|
T Consensus 214 ~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~--~~ad~illV~D~s~~~~~~~~~~~~~~~~i~-~~~~----~~piilV 286 (357)
T 2e87_A 214 FRYQIIDTPGLLDRPISERNEIEKQAILALR--YLGNLIIYIFDPSEHCGFPLEEQIHLFEEVH-GEFK----DLPFLVV 286 (357)
T ss_dssp EEEEEEECTTTSSSCSTTSCHHHHHHHHGGG--GTCSEEEEEECTTCTTSSCHHHHHHHHHHHH-HHTT----TSCEEEE
T ss_pred ceEEEEeCCCccccchhhhhHHHHHHHHHHH--hcCCEEEEEEeCCccccCCHHHHHHHHHHHH-HhcC----CCCEEEE
Confidence 357799999975421 11112222221 346778777776543 36655554444333 2211 1345688
Q ss_pred EcccCCcCccHH--HHHHHHHHhCCcEEEEe--cCCCCccC
Q psy11993 580 LTKFDTIDDKVG--AAISMTYITGQPIVFVG--TGQTYTDL 616 (630)
Q Consensus 580 lTK~D~~~~~~G--~~ls~~~~~g~PI~fvg--~Gq~v~DL 616 (630)
+||.|.. .... .+...+...+.|+.+++ +|+.+.+|
T Consensus 287 ~NK~Dl~-~~~~~~~~~~~~~~~~~~~~~iSA~~g~gi~~l 326 (357)
T 2e87_A 287 INKIDVA-DEENIKRLEKFVKEKGLNPIKISALKGTGIDLV 326 (357)
T ss_dssp ECCTTTC-CHHHHHHHHHHHHHTTCCCEECBTTTTBTHHHH
T ss_pred EECcccC-ChHHHHHHHHHHHhcCCCeEEEeCCCCcCHHHH
Confidence 9999986 3332 24555556789999999 88887765
No 118
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=98.51 E-value=7.1e-06 Score=80.16 Aligned_cols=174 Identities=10% Similarity=0.037 Sum_probs=88.4
Q ss_pred eEEEEEcc-CCCChHHHHHHHHHHHHhcCCeEEEeecccC---------CccHHHHHHHHHhhhcccCC-------CcCC
Q psy11993 412 FVMAFCGV-NGVGKSTNLAKICFWLIENNLNVLIAACDTF---------RAGAVEQLRTHVRHLCSLHP-------AAKH 474 (630)
Q Consensus 412 ~vi~lvGp-NGvGKTTllakLA~~l~~~ggkVlI~~~Dt~---------R~ga~eQLr~~~~~l~~~~~-------~~~~ 474 (630)
++|+|+|. .|+||||++..||..+...|.+|++.+-... ..+....+..+ .+.... ....
T Consensus 2 k~I~v~s~kgGvGKTt~a~nLa~~la~~G~rVll~dp~~~~~~~~~~~~~~~d~~~~~~~---~~~~~~~~~~~~~~~~~ 78 (224)
T 1byi_A 2 KRYFVTGTDTEVGKTVASCALLQAAKAAGYRTAGYKPVASGSEKTPEGLRNSDALALQRN---SSLQLDYATVNPYTFAE 78 (224)
T ss_dssp EEEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEECSEEESCBCCTTSCBCHHHHHHHHT---CSSCCCHHHHCSEEESS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcceecCCccCCCCcChHHHHHHHHH---hCCCCChhhcccEEeCC
Confidence 47888886 5899999999999999999999999641110 01111222221 111000 0000
Q ss_pred cchhhhHhhhccCCCCHHHHHHHHHHHhhhcCCCeeeeccccchhc-------hHHHHHHHHhhhhhcCCCeEEEEeccc
Q psy11993 475 GGREMVQLFEKGYGKDPAEIAFRAISHARDMHIDVVLIDTAGRMQD-------NEPLMRALAKLVKVNQPDLLLFVGEAL 547 (630)
Q Consensus 475 tv~env~l~~~~~~~d~~~ia~~ai~~a~~~~~D~vlIDTaGr~~~-------~~~L~~aL~kl~~~~~Pd~VLlV~E~~ 547 (630)
....++........... ....+.++.+. .+||+|+||++|+... ...++..+ . ..+++|..+.
T Consensus 79 ~~~~~~~~~~~~~~~~~-~~l~~~l~~l~-~~yD~viID~p~~l~~p~~~~~~~~~l~~~~-------~-~~vi~v~~~~ 148 (224)
T 1byi_A 79 PTSPHIISAQEGRPIES-LVMSAGLRALE-QQADWVLVEGAGGWFTPLSDTFTFADWVTQE-------Q-LPVILVVGVK 148 (224)
T ss_dssp CSCHHHHHHHHTCCCCH-HHHHHHHHHHH-TTCSEEEEECSSSTTCEEETTEEHHHHHHHH-------T-CCEEEEEECS
T ss_pred CCCHHHHHHHcCCCCCH-HHHHHHHHHHH-HhCCEEEEEcCCccccCCCcchhHHHHHHHh-------C-CCEEEEecCC
Confidence 00011110000111122 23334555443 4799999999987642 12222211 1 2355566552
Q ss_pred cCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcccCCcCccHHHHHH-HHHHhCCcEE
Q psy11993 548 VGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTIDDKVGAAIS-MTYITGQPIV 605 (630)
Q Consensus 548 ~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK~D~~~~~~G~~ls-~~~~~g~PI~ 605 (630)
...+..+....+.+.+ ....+.|+|+|++|.........+. +...++.|+.
T Consensus 149 --~~~~~~~~~~i~~l~~-----~~~~i~gvvlN~~~~~~~~~~~~~~~l~~~~~~~vl 200 (224)
T 1byi_A 149 --LGCINHAMLTAQVIQH-----AGLTLAGWVANDVTPPGKRHAEYMTTLTRMIPAPLL 200 (224)
T ss_dssp --TTHHHHHHHHHHHHHH-----TTCCEEEEEEECCSSCCTTHHHHHHHHHHHSSSCEE
T ss_pred --CCcHHHHHHHHHHHHH-----CCCcEEEEEEeCCCCchhhHHHHHHHHHHHcCCCEE
Confidence 3444444333333321 1246889999999974223333443 3444788874
No 119
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=98.51 E-value=1.8e-06 Score=87.18 Aligned_cols=176 Identities=19% Similarity=0.168 Sum_probs=94.1
Q ss_pred CCeEEEEEccC-CCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHh-------------hhcccCCCc--C
Q psy11993 410 RPFVMAFCGVN-GVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVR-------------HLCSLHPAA--K 473 (630)
Q Consensus 410 ~p~vi~lvGpN-GvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~-------------~l~~~~~~~--~ 473 (630)
++.+|+|++.- |+||||++..||..+. .|.+|+++++|.... ....+..... .+....... -
T Consensus 26 ~~~vI~v~s~kGGvGKTT~a~~LA~~la-~g~~VlliD~D~~~~-~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~i 103 (267)
T 3k9g_A 26 KPKIITIASIKGGVGKSTSAIILATLLS-KNNKVLLIDMDTQAS-ITSYFYEKIEKLGINFTKFNIYEILKENVDIDSTI 103 (267)
T ss_dssp CCEEEEECCSSSSSCHHHHHHHHHHHHT-TTSCEEEEEECTTCH-HHHHTHHHHHHTTCCTTTSSHHHHHTTSSCGGGGC
T ss_pred CCeEEEEEeCCCCchHHHHHHHHHHHHH-CCCCEEEEECCCCCC-HHHHhhccccccccCcccccHHHHhcCCCCHHHhh
Confidence 45889998554 7999999999999999 899999999998653 2222211110 000000000 0
Q ss_pred CcchhhhHhhhccCC-----C----CHHHHHHHHHHHhhhcCCCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEe
Q psy11993 474 HGGREMVQLFEKGYG-----K----DPAEIAFRAISHARDMHIDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVG 544 (630)
Q Consensus 474 ~tv~env~l~~~~~~-----~----d~~~ia~~ai~~a~~~~~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~ 544 (630)
....+++.++..+.. . .......+.++.+. ..||+|+|||+++... ....+|. ..|.++++.
T Consensus 104 ~~~~~~l~~lp~~~~~~~~~~~~~~~~~~~l~~~l~~l~-~~yD~viiD~pp~~~~--~~~~~l~------~aD~vivv~ 174 (267)
T 3k9g_A 104 INVDNNLDLIPSYLTLHNFSEDKIEHKDFLLKTSLGTLY-YKYDYIVIDTNPSLDV--TLKNALL------CSDYVIIPM 174 (267)
T ss_dssp EEEETTEEEECCCGGGGGTTTCCCTTGGGHHHHHHHTTC-TTCSEEEEEECSSCSH--HHHHHHT------TCSEEEEEE
T ss_pred ccCCCCEEEEeCChHHHHHHHhhhhhHHHHHHHHHHHhh-cCCCEEEEECcCCccH--HHHHHHH------HCCeEEEEe
Confidence 001122322221110 0 01223344555443 4699999999987632 2223333 357888888
Q ss_pred ccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcccCCcCccHHHHHHHHHHhCCcE
Q psy11993 545 EALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTIDDKVGAAISMTYITGQPI 604 (630)
Q Consensus 545 E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK~D~~~~~~G~~ls~~~~~g~PI 604 (630)
++.. .++..+..+.+.+..+.. ...+ ++|+|+++.. .....+...... +.|+
T Consensus 175 ~~~~--~s~~~~~~~~~~l~~~~~---~~~~-~vv~N~~~~~-~~~~~~~~~l~~-~~~~ 226 (267)
T 3k9g_A 175 TAEK--WAVESLDLFNFFVRKLNL---FLPI-FLIITRFKKN-RTHKTLFEILKT-KDRF 226 (267)
T ss_dssp ESCT--THHHHHHHHHHHHHTTTC---CCCE-EEEEEEECTT-CSCCHHHHHHTT-STTE
T ss_pred CCCh--HHHHHHHHHHHHHHHHhc---cCCE-EEEEecccCc-chHHHHHHHHhc-Cccc
Confidence 7743 344444555555544421 1223 6999999543 333344444333 5554
No 120
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=98.49 E-value=8.5e-07 Score=87.74 Aligned_cols=40 Identities=20% Similarity=0.230 Sum_probs=30.1
Q ss_pred hhccCCCeEEEEEccCCCChHHHHHHHHHHH--HhcCCeEEEee
Q psy11993 405 AKKQGRPFVMAFCGVNGVGKSTNLAKICFWL--IENNLNVLIAA 446 (630)
Q Consensus 405 ~i~~g~p~vi~lvGpNGvGKTTllakLA~~l--~~~ggkVlI~~ 446 (630)
.+++| ++++|+|||||||||++..|++.. .+.++.+.+..
T Consensus 26 gi~~G--~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~ 67 (251)
T 2ehv_A 26 GFPEG--TTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTL 67 (251)
T ss_dssp SEETT--CEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEES
T ss_pred CCCCC--cEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEc
Confidence 45677 999999999999999999999533 44444444443
No 121
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=98.48 E-value=3.8e-07 Score=90.14 Aligned_cols=156 Identities=13% Similarity=0.062 Sum_probs=85.9
Q ss_pred EEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHH-------------Hhhhccc----------C-
Q psy11993 414 MAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTH-------------VRHLCSL----------H- 469 (630)
Q Consensus 414 i~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~-------------~~~l~~~----------~- 469 (630)
|+|.|.-|+||||++..||..+...|.+|+++++|.. .+....+... ...+... .
T Consensus 3 I~vs~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~-~~l~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (254)
T 3kjh_A 3 LAVAGKGGVGKTTVAAGLIKIMASDYDKIYAVDGDPD-SCLGQTLGLSIEEAYAITPLIEMKDEIREKTGDGGLLILNPK 81 (254)
T ss_dssp EEEECSSSHHHHHHHHHHHHHHTTTCSCEEEEEECTT-SCHHHHTTCCHHHHHTSCCGGGCHHHHHHHHCSSSCCCSSCC
T ss_pred EEEecCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCC-cChHHHhCCCcccccccccchhHHHHHHhhccCCcccccCCc
Confidence 5668999999999999999999999999999999994 4332222100 0000000 0
Q ss_pred --CCc-C-CcchhhhHh-hhcc------CCCC-HH-HHHHHHHHHhhhcCCCeeeeccccchhchHHHHHHHHhhhhhcC
Q psy11993 470 --PAA-K-HGGREMVQL-FEKG------YGKD-PA-EIAFRAISHARDMHIDVVLIDTAGRMQDNEPLMRALAKLVKVNQ 536 (630)
Q Consensus 470 --~~~-~-~tv~env~l-~~~~------~~~d-~~-~ia~~ai~~a~~~~~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~ 536 (630)
..+ . .....++.+ +..+ .+.. .. ....++++.+....||+|+|||+++..... ..++ ..
T Consensus 82 l~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~yD~viiD~pp~~~~~~--~~~l------~~ 153 (254)
T 3kjh_A 82 VDGDLDKYGRYIDDKIFLIRMGEIKKGGSQCYCRENSFLGSVVSALFLDKKEAVVMDMGAGIEHLT--RGTA------KA 153 (254)
T ss_dssp CTTSGGGSSEESSSSEEEEECCCCCCCCSSCCHHHHHHHHHHHHHHHHTCCSEEEEEECTTCTTCC--HHHH------TT
T ss_pred hhccHHhcccccCCeEEEEEecccccCCCCCCcchHHHHHHHHHHhccCCCCEEEEeCCCcccHHH--HHHH------HH
Confidence 000 0 000011111 1100 0111 11 335566666534579999999998765411 1122 34
Q ss_pred CCeEEEEeccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcccCC
Q psy11993 537 PDLLLFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDT 585 (630)
Q Consensus 537 Pd~VLlV~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK~D~ 585 (630)
.|.++++.+|.. .++..+..+.+.+.++. ....++|+|+++.
T Consensus 154 aD~viiv~~~~~--~s~~~~~~~~~~~~~~~-----~~~~~~v~N~~~~ 195 (254)
T 3kjh_A 154 VDMMIAVIEPNL--NSIKTGLNIEKLAGDLG-----IKKVRYVINKVRN 195 (254)
T ss_dssp CSEEEEEECSSH--HHHHHHHHHHHHHHHHT-----CSCEEEEEEEECC
T ss_pred CCEEEEecCCCH--HHHHHHHHHHHHHHHcC-----CccEEEEEeCCCC
Confidence 578888887742 23333334433333321 2356899999985
No 122
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=98.46 E-value=3.4e-07 Score=95.36 Aligned_cols=74 Identities=18% Similarity=0.211 Sum_probs=52.3
Q ss_pred CCeEEEEEccCCCChHHHHHHHHHHHH--hcCCeEEEeecccCCccHHHHHHHHHhhhcccCCCcCCcchhhhHhhhc
Q psy11993 410 RPFVMAFCGVNGVGKSTNLAKICFWLI--ENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHPAAKHGGREMVQLFEK 485 (630)
Q Consensus 410 ~p~vi~lvGpNGvGKTTllakLA~~l~--~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~~~~~tv~env~l~~~ 485 (630)
++.+++|+|||||||||++++|++.+. +.+|+|.++++|-+.... ..++ ...++.....++.+++.+++.++..
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~~~~~~-~~~~-~~~~vq~~~~~~~~~~~~~~~~~~~ 154 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGFLHPN-QVLK-ERGLMKKKGFPESYDMHRLVKFVSD 154 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGBCCH-HHHH-HHTCTTCTTSGGGBCHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCCccCcH-HHHH-hCCEeecCCCCCCccHHHHHHHHHH
Confidence 449999999999999999999999998 889999998888654322 2222 2333321122456777777776543
No 123
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=98.46 E-value=2.2e-08 Score=106.58 Aligned_cols=44 Identities=14% Similarity=0.106 Sum_probs=38.1
Q ss_pred hhhhhhhhcc--CCCeEEEEEccCCCChHHHHHHHHHHHHhcC----CeEEE
Q psy11993 399 LRDALEAKKQ--GRPFVMAFCGVNGVGKSTNLAKICFWLIENN----LNVLI 444 (630)
Q Consensus 399 L~~i~~~i~~--g~p~vi~lvGpNGvGKTTllakLA~~l~~~g----gkVlI 444 (630)
...|++.+.+ | +.++|+|||||||||+++.|++++.+.. |++.+
T Consensus 158 ~~~v~~~v~~~lg--~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i 207 (365)
T 1lw7_A 158 WKFIPKEARPFFA--KTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFV 207 (365)
T ss_dssp GGGSCTTTGGGTC--EEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHH
T ss_pred hhhCCHHHHHhhh--CeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHH
Confidence 3456777888 8 8999999999999999999999998887 77765
No 124
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=98.44 E-value=2.3e-06 Score=83.76 Aligned_cols=149 Identities=19% Similarity=0.224 Sum_probs=89.2
Q ss_pred EEEEE-ccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccCCCcCCcchhhhHhhhccCCCCH
Q psy11993 413 VMAFC-GVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHPAAKHGGREMVQLFEKGYGKDP 491 (630)
Q Consensus 413 vi~lv-GpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~~~~~tv~env~l~~~~~~~d~ 491 (630)
+|+|+ +.-|+||||++..||..+...| +|+++++|.+.. ....+ .. .. .++ .++.. +
T Consensus 2 vI~v~s~KGGvGKTT~a~~LA~~la~~g-~VlliD~D~q~~-~~~~~----~~-~~-l~~---------~vi~~----~- 59 (209)
T 3cwq_A 2 IITVASFKGGVGKTTTAVHLSAYLALQG-ETLLIDGDPNRS-ATGWG----KR-GS-LPF---------KVVDE----R- 59 (209)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHTTS-CEEEEEECTTCH-HHHHH----HH-SC-CSS---------EEEEG----G-
T ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHhcC-CEEEEECCCCCC-HHHHh----cC-CC-CCc---------ceeCH----H-
Confidence 56676 5569999999999999999888 999999999653 22222 11 11 010 11110 0
Q ss_pred HHHHHHHHHHhhhcCCCeeeeccccc-hhchHHHHHHHHhhhhhcCCCeEEEEeccccCccHHHHHHHHHHHHhhcccCC
Q psy11993 492 AEIAFRAISHARDMHIDVVLIDTAGR-MQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQLVKFNNAMADHSLSD 570 (630)
Q Consensus 492 ~~ia~~ai~~a~~~~~D~vlIDTaGr-~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~Dav~ql~~f~~~l~~~~~~~ 570 (630)
.++.+. ..||+|+|||+++ .... ...++ ...|.++++.+|.. ..+..+..+.+.+..+.
T Consensus 60 ------~l~~l~-~~yD~viiD~p~~~~~~~--~~~~l------~~aD~viiv~~~~~--~~~~~~~~~~~~l~~~~--- 119 (209)
T 3cwq_A 60 ------QAAKYA-PKYQNIVIDTQARPEDED--LEALA------DGCDLLVIPSTPDA--LALDALMLTIETLQKLG--- 119 (209)
T ss_dssp ------GHHHHG-GGCSEEEEEEECCCSSSH--HHHHH------HTSSEEEEEECSSH--HHHHHHHHHHHHHHHTC---
T ss_pred ------HHHHhh-hcCCEEEEeCCCCcCcHH--HHHHH------HHCCEEEEEecCCc--hhHHHHHHHHHHHHhcc---
Confidence 222232 4699999999998 4331 12222 24578888887743 23444444444454332
Q ss_pred CCCCeeEEEEcccCCcC-ccHHHHHHHHHHhCCcEE
Q psy11993 571 NPHLIDGIVLTKFDTID-DKVGAAISMTYITGQPIV 605 (630)
Q Consensus 571 ~~~~i~gIIlTK~D~~~-~~~G~~ls~~~~~g~PI~ 605 (630)
.. ..++|+|+++... .....+.......|.|+.
T Consensus 120 -~~-~~~vv~N~~~~~~~~~~~~~~~~l~~~g~~v~ 153 (209)
T 3cwq_A 120 -NN-RFRILLTIIPPYPSKDGDEARQLLTTAGLPLF 153 (209)
T ss_dssp -SS-SEEEEECSBCCTTSCHHHHHHHHHHHTTCCBC
T ss_pred -CC-CEEEEEEecCCccchHHHHHHHHHHHcCCchh
Confidence 12 2589999999852 223445555566777764
No 125
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=98.42 E-value=8.6e-07 Score=86.36 Aligned_cols=167 Identities=14% Similarity=0.183 Sum_probs=89.6
Q ss_pred CCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccCCCcCCcchhhhHhhhccCCC
Q psy11993 410 RPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHPAAKHGGREMVQLFEKGYGK 489 (630)
Q Consensus 410 ~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~~~~~tv~env~l~~~~~~~ 489 (630)
+..+++|+|+.||||||++..|+..+... .++.+++.|+.+.....+++. .+..... +.... ....
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~-~~~~~i~~d~~~~~d~~~~~~----~~~~~~~--------~~~~~-~~~~ 94 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERIGNE-VKIGAMLGDVVSKADYERVRR----FGIKAEA--------ISTGK-ECHL 94 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHHTTT-SCEEEEECSCCCHHHHHHHHT----TTCEEEE--------CCCTT-CSSC
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhccC-CeEEEEecCCCCchhHHHHHh----CCCcEEE--------ecCCc-eeec
Confidence 34799999999999999999999887554 789999999864322222221 1110000 00000 0011
Q ss_pred CHHHHHHHHHHHhhhcCCCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCccHHHHHHHHHHHHhhcccC
Q psy11993 490 DPAEIAFRAISHARDMHIDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQLVKFNNAMADHSLS 569 (630)
Q Consensus 490 d~~~ia~~ai~~a~~~~~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~Dav~ql~~f~~~l~~~~~~ 569 (630)
... ...+++. ...++|++++||+|.+.... ... ..++.+++|.+++.+.+... .+.....
T Consensus 95 ~~~-~~~~~~~--~~~~~d~iiidt~G~~~~~~--------~~~-~~~~~~i~vvd~~~~~~~~~---~~~~~~~----- 154 (221)
T 2wsm_A 95 DAH-MIYHRLK--KFSDCDLLLIENVGNLICPV--------DFD-LGENYRVVMVSVTEGDDVVE---KHPEIFR----- 154 (221)
T ss_dssp CHH-HHHTTGG--GGTTCSEEEEEEEEBSSGGG--------GCC-CSCSEEEEEEEGGGCTTHHH---HCHHHHH-----
T ss_pred ccH-HHHHHHH--hcCCCCEEEEeCCCCCCCCc--------hhc-cccCcEEEEEeCCCcchhhh---hhhhhhh-----
Confidence 111 1122222 33568999999999521100 001 23456788888877754221 1111111
Q ss_pred CCCCCeeEEEEcccCCcCc---cHHHHHHHHHHh--CCcEEEEe--cCCCCc
Q psy11993 570 DNPHLIDGIVLTKFDTIDD---KVGAAISMTYIT--GQPIVFVG--TGQTYT 614 (630)
Q Consensus 570 ~~~~~i~gIIlTK~D~~~~---~~G~~ls~~~~~--g~PI~fvg--~Gq~v~ 614 (630)
....+++||+|..+. ....+...+... +.|+.+++ +|+.+.
T Consensus 155 ----~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~g~gi~ 202 (221)
T 2wsm_A 155 ----VADLIVINKVALAEAVGADVEKMKADAKLINPRAKIIEMDLKTGKGFE 202 (221)
T ss_dssp ----TCSEEEEECGGGHHHHTCCHHHHHHHHHHHCTTSEEEECBTTTTBTHH
T ss_pred ----cCCEEEEecccCCcchhhHHHHHHHHHHHhCCCCeEEEeecCCCCCHH
Confidence 245789999997421 234444444443 35676655 344443
No 126
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=98.40 E-value=1.1e-07 Score=93.90 Aligned_cols=46 Identities=17% Similarity=0.187 Sum_probs=31.8
Q ss_pred hhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeeccc
Q psy11993 398 ILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDT 449 (630)
Q Consensus 398 iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt 449 (630)
-|++|+|.+.+| ++++|+|||||||||++++|++.+ + |.|.+ +.+.
T Consensus 12 ~l~~isl~i~~G--~~~~lvGpsGsGKSTLl~~L~g~~-p--G~i~~-g~~~ 57 (218)
T 1z6g_A 12 SGLVPRGSMNNI--YPLVICGPSGVGKGTLIKKLLNEF-P--NYFYF-SVSC 57 (218)
T ss_dssp ----------CC--CCEEEECSTTSSHHHHHHHHHHHS-T--TTEEE-CCCE
T ss_pred cccCCceecCCC--CEEEEECCCCCCHHHHHHHHHhhC-C--CcEEE-eecc
Confidence 477899999999 899999999999999999999988 5 78887 5543
No 127
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=98.39 E-value=1.9e-06 Score=92.01 Aligned_cols=66 Identities=9% Similarity=0.039 Sum_probs=46.7
Q ss_pred eeccccchhchHHHHHHHHhh-hhhcCCCeEEEEeccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 511 LIDTAGRMQDNEPLMRALAKL-VKVNQPDLLLFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 511 lIDTaGr~~~~~~L~~aL~kl-~~~~~Pd~VLlV~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
+-.+|||++++..++++|+.. .-..+| .+|++|||++++|...+.. +.+.+.++.. .+.+.|++|+
T Consensus 277 ~~~LSgGe~qr~~la~al~~~~~~~~~p-~~lllDEpt~~LD~~~~~~-~~~~l~~l~~----~g~tvi~itH 343 (365)
T 3qf7_A 277 ARGLSGGERALISISLAMSLAEVASGRL-DAFFIDEGFSSLDTENKEK-IASVLKELER----LNKVIVFITH 343 (365)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHTTTTC-CEEEEESCCTTSCHHHHHH-HHHHHHGGGG----SSSEEEEEES
T ss_pred chhCCHHHHHHHHHHHHHHhhhcccCCC-CEEEEeCCCccCCHHHHHH-HHHHHHHHHh----CCCEEEEEec
Confidence 346799999999999988721 112467 5777999999999877644 3445655543 2577888887
No 128
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=98.35 E-value=1.5e-05 Score=84.46 Aligned_cols=38 Identities=37% Similarity=0.512 Sum_probs=34.9
Q ss_pred eEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeeccc
Q psy11993 412 FVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDT 449 (630)
Q Consensus 412 ~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt 449 (630)
.++++.|..|+||||+++.||..+...|.+|+++++|+
T Consensus 27 ~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD~D~ 64 (349)
T 3ug7_A 27 KYIMFGGKGGVGKTTMSAATGVYLAEKGLKVVIVSTDP 64 (349)
T ss_dssp EEEEEECSSSTTHHHHHHHHHHHHHHSSCCEEEEECCT
T ss_pred EEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 56666699999999999999999999999999999999
No 129
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=98.35 E-value=4.2e-07 Score=92.65 Aligned_cols=49 Identities=16% Similarity=0.257 Sum_probs=43.5
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhc-CCeEEEeeccc
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIEN-NLNVLIAACDT 449 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~-ggkVlI~~~Dt 449 (630)
.+|++++ +.+| ++++|+|||||||||+++.|++++.+. .|+|.+.+.+.
T Consensus 15 ~vl~~i~--i~~g--~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i 64 (261)
T 2eyu_A 15 DKVLELC--HRKM--GLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPI 64 (261)
T ss_dssp THHHHGG--GCSS--EEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSC
T ss_pred HHHHHHh--hCCC--CEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcc
Confidence 4788887 6777 899999999999999999999999988 89999988664
No 130
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=98.33 E-value=7e-06 Score=85.96 Aligned_cols=43 Identities=23% Similarity=0.384 Sum_probs=37.7
Q ss_pred eEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHH
Q psy11993 412 FVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAV 455 (630)
Q Consensus 412 ~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~ 455 (630)
.++++-|..|+||||+++.||..+...|.+|+++++|. +.+..
T Consensus 15 ~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD~D~-~~~l~ 57 (324)
T 3zq6_A 15 TFVFIGGKGGVGKTTISAATALWMARSGKKTLVISTDP-AHSLS 57 (324)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEECCS-SCCHH
T ss_pred EEEEEeCCCCchHHHHHHHHHHHHHHCCCcEEEEeCCC-CcCHH
Confidence 57777799999999999999999999999999999999 54433
No 131
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=98.33 E-value=3.8e-06 Score=89.10 Aligned_cols=100 Identities=17% Similarity=0.183 Sum_probs=63.6
Q ss_pred HHHcCCCHHHHHHHHHHHHHHhcCCccCCccchHHHHHHHHHHHHHHHcCCCcchhhhhhh-hhhhccCCCeEEEEEccC
Q psy11993 342 LIAKNVAADIAVKLCDSVALKLEGKVLGTFESVANTVKSTLTDALVQILSPKRRVDILRDA-LEAKKQGRPFVMAFCGVN 420 (630)
Q Consensus 342 Li~~~V~~~ia~~l~~~v~~~l~g~~~~~~~~~~~~v~~~l~~~L~~il~~~~~~~iL~~i-~~~i~~g~p~vi~lvGpN 420 (630)
...+++...-|.++++.+...+.. +.|.+....... .....++ ++ ....|+.+ ...++.| +++.|+|||
T Consensus 71 ~~~~~~s~~~~~~~l~~~~~~~~~---~~~~~~~~~~~~--~~~~~~i--sT-G~~~LD~lL~ggi~~G--~i~~I~G~~ 140 (349)
T 1pzn_A 71 KEVAGISEGTALKIIQAARKAANL---GTFMRADEYLKK--RATIGRI--ST-GSKSLDKLLGGGIETQ--AITEVFGEF 140 (349)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHCST---TSCEEHHHHHHH--HHTCCEE--CC-SCHHHHHHHTSSEESS--EEEEEEEST
T ss_pred HhhcCCCHHHHHHHHHHHhhhccc---cCCccHHHHHhh--hccCCee--cC-CCHHHHHHhcCCCCCC--eEEEEECCC
Confidence 334788888888888888776532 245544332211 0111111 11 23445555 3667788 999999999
Q ss_pred CCChHHHHHHHHHHH--Hhc----CCe-EEEeecccCC
Q psy11993 421 GVGKSTNLAKICFWL--IEN----NLN-VLIAACDTFR 451 (630)
Q Consensus 421 GvGKTTllakLA~~l--~~~----ggk-VlI~~~Dt~R 451 (630)
|+||||++..|++.+ .+. +|+ |+|.+.++++
T Consensus 141 GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~ 178 (349)
T 1pzn_A 141 GSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFR 178 (349)
T ss_dssp TSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCC
T ss_pred CCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCC
Confidence 999999999999987 333 368 6666666653
No 132
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=98.33 E-value=9.8e-07 Score=92.29 Aligned_cols=65 Identities=15% Similarity=0.117 Sum_probs=44.8
Q ss_pred eeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEccc
Q psy11993 511 LIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKF 583 (630)
Q Consensus 511 lIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK~ 583 (630)
+-..||+++++..++++|+.. ....| .++++|||++++|...+. .+.+.+.++.. +.+.|++|+-
T Consensus 217 ~~~lS~Gq~q~v~ia~~l~~~-~~~~~-~~lllDEp~~~LD~~~~~-~l~~~l~~~~~-----~~~vi~~tH~ 281 (322)
T 1e69_A 217 LSLLSGGEKALVGLALLFALM-EIKPS-PFYVLDEVDSPLDDYNAE-RFKRLLKENSK-----HTQFIVITHN 281 (322)
T ss_dssp GGGSCHHHHHHHHHHHHHHHT-TTSCC-SEEEEESCCSSCCHHHHH-HHHHHHHHHTT-----TSEEEEECCC
T ss_pred hhhCCHHHHHHHHHHHHHHHh-ccCCC-CEEEEeCCCCCCCHHHHH-HHHHHHHHhcC-----CCeEEEEECC
Confidence 446799999999999988622 11234 577899999999987653 44455655532 4567888874
No 133
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=98.30 E-value=2e-06 Score=83.45 Aligned_cols=48 Identities=17% Similarity=0.145 Sum_probs=37.5
Q ss_pred hhhhhhhh-hhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeeccc
Q psy11993 397 DILRDALE-AKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDT 449 (630)
Q Consensus 397 ~iL~~i~~-~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt 449 (630)
..|+.+.. -+++| ++++|+||||+||||++..|++ ..+++|++++.+.
T Consensus 7 ~~LD~~l~Ggi~~G--~~~~i~G~~GsGKTtl~~~l~~---~~~~~v~~i~~~~ 55 (220)
T 2cvh_A 7 KSLDSLLGGGFAPG--VLTQVYGPYASGKTTLALQTGL---LSGKKVAYVDTEG 55 (220)
T ss_dssp HHHHHHTTSSBCTT--SEEEEECSTTSSHHHHHHHHHH---HHCSEEEEEESSC
T ss_pred HHHHHhhcCCCcCC--EEEEEECCCCCCHHHHHHHHHH---HcCCcEEEEECCC
Confidence 34444443 35677 8999999999999999999999 5577888887664
No 134
>3pg5_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 3.30A {Corynebacterium diphtheriae}
Probab=98.27 E-value=3e-06 Score=90.18 Aligned_cols=42 Identities=24% Similarity=0.392 Sum_probs=36.3
Q ss_pred eEEEEE-ccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCcc
Q psy11993 412 FVMAFC-GVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAG 453 (630)
Q Consensus 412 ~vi~lv-GpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~g 453 (630)
++|+|+ +.-||||||++..||..+...|.+|+++++|.....
T Consensus 2 kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVLlID~D~q~~~ 44 (361)
T 3pg5_A 2 RTISFFNNKGGVGKTTLSTNVAHYFALQGKRVLYVDCDPQCNA 44 (361)
T ss_dssp EEEEBCCSSCCHHHHHHHHHHHHHHHHTTCCEEEEECCTTCTT
T ss_pred eEEEEEcCCCCCcHHHHHHHHHHHHHhCCCcEEEEEcCCCCCh
Confidence 467777 566899999999999999999999999999986543
No 135
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=98.25 E-value=6.8e-06 Score=86.72 Aligned_cols=39 Identities=26% Similarity=0.305 Sum_probs=36.3
Q ss_pred CeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeeccc
Q psy11993 411 PFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDT 449 (630)
Q Consensus 411 p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt 449 (630)
+.++++.|..|+||||++..||..+...|.+|+++++|.
T Consensus 16 ~~i~~~sgkGGvGKTt~a~~lA~~la~~g~~vllid~D~ 54 (334)
T 3iqw_A 16 LRWIFVGGKGGVGKTTTSCSLAIQLAKVRRSVLLLSTDP 54 (334)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHTTSSSCEEEEECCS
T ss_pred eEEEEEeCCCCccHHHHHHHHHHHHHhCCCcEEEEECCC
Confidence 468888899999999999999999999999999999996
No 136
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=98.24 E-value=1.9e-06 Score=88.34 Aligned_cols=120 Identities=18% Similarity=0.101 Sum_probs=69.6
Q ss_pred eEEEEEc-cCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhh---hcccCCCcCCcchhhh-Hhhhc-
Q psy11993 412 FVMAFCG-VNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRH---LCSLHPAAKHGGREMV-QLFEK- 485 (630)
Q Consensus 412 ~vi~lvG-pNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~---l~~~~~~~~~tv~env-~l~~~- 485 (630)
++|+|++ ..|+||||++..||..+...|.+|+++++|..+......+...... .....+ .++ .++..
T Consensus 5 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~q~~l~~~l~~~~~~~~~~~~~~~-------~~l~~vl~~~ 77 (286)
T 2xj4_A 5 RVIVVGNEKGGAGKSTIAVHLVTALLYGGAKVAVIDLDLRQRTSARFFENRRAWLDNKKIELP-------EPLALNLSDN 77 (286)
T ss_dssp EEEEECCSSSCTTHHHHHHHHHHHHHHTTCCEEEEECCTTTCHHHHHHHHHHHHHHHHTCCCC-------CCEEECSSSC
T ss_pred eEEEEEcCCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCCCCHHHHhCCChhHhHhccccCC-------CchheEeeCC
Confidence 5788884 5589999999999999999999999999999544443333221111 111000 111 11110
Q ss_pred ----cCCCC--HHHHHHHHHHHhhhcCCCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccc
Q psy11993 486 ----GYGKD--PAEIAFRAISHARDMHIDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEAL 547 (630)
Q Consensus 486 ----~~~~d--~~~ia~~ai~~a~~~~~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~ 547 (630)
....+ ......+.++.+. ..||+|+|||+++.. .....++. ..|.++++.++.
T Consensus 78 ~~~~~~~~~~~~~~~l~~~l~~l~-~~yD~viiD~p~~~~--~~~~~~l~------~aD~viiv~~~~ 136 (286)
T 2xj4_A 78 DVALAERPEEEQVAGFEAAFARAM-AECDFILIDTPGGDS--AITRMAHG------RADLVVTPMNDS 136 (286)
T ss_dssp HHHHTTSCHHHHHHHHHHHHHHHH-HHCSEEEEECCSSCC--HHHHHHHH------TCSEEEEEEESS
T ss_pred CCCCcChhhhhhHHHHHHHHHHHH-hcCCEEEEcCCCCcc--HHHHHHHH------HCCEEEEEEcCC
Confidence 00000 1112344455444 469999999999863 22223332 456788777764
No 137
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=98.22 E-value=9.6e-06 Score=87.68 Aligned_cols=110 Identities=19% Similarity=0.158 Sum_probs=61.3
Q ss_pred HHcCCCHHHHHHHHHHHHHHhcCCccCCccchHHHHHHHHHHHHHHHcCCCcchhhhhhhh-hhhccCCCeEEEEEccCC
Q psy11993 343 IAKNVAADIAVKLCDSVALKLEGKVLGTFESVANTVKSTLTDALVQILSPKRRVDILRDAL-EAKKQGRPFVMAFCGVNG 421 (630)
Q Consensus 343 i~~~V~~~ia~~l~~~v~~~l~g~~~~~~~~~~~~v~~~l~~~L~~il~~~~~~~iL~~i~-~~i~~g~p~vi~lvGpNG 421 (630)
..+++...-|.++++.+++... ..|......... ...+.++-+ .+.-|+.+. =-+.+| +++.|+||+|
T Consensus 120 ~~~gis~~~~~~i~~~a~~~~~----~~~~ta~~l~~~--~~~~~~i~T---G~~~LD~lLgGGI~~G--ei~~I~G~sG 188 (400)
T 3lda_A 120 EIKGISEAKADKLLNEAARLVP----MGFVTAADFHMR--RSELICLTT---GSKNLDTLLGGGVETG--SITELFGEFR 188 (400)
T ss_dssp TSTTCCHHHHHHHHHHHHHHSC----CSCCCHHHHHHH--HHTSCEECC---SCHHHHHHTTTSEETT--SEEEEEESTT
T ss_pred HHhCCCHHHHHHHHHHHHHhcc----ccCCCHHHHHhh--hccCCcccc---CChhHHHHhcCCcCCC--cEEEEEcCCC
Confidence 3468888889999988887553 234433322210 111111111 223333322 124566 8999999999
Q ss_pred CChHHHHHHHHHHH-Hh-----cCCeEEEe-ecccCCccHHHHHHHHHhhhc
Q psy11993 422 VGKSTNLAKICFWL-IE-----NNLNVLIA-ACDTFRAGAVEQLRTHVRHLC 466 (630)
Q Consensus 422 vGKTTllakLA~~l-~~-----~ggkVlI~-~~Dt~R~ga~eQLr~~~~~l~ 466 (630)
+||||++..||... .+ .+++++++ +.+.++. +.++.++..++
T Consensus 189 sGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~---~rl~~~a~~~g 237 (400)
T 3lda_A 189 TGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRP---VRLVSIAQRFG 237 (400)
T ss_dssp SSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCH---HHHHHHHHHTT
T ss_pred CChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCH---HHHHHHHHHcC
Confidence 99999999887433 22 23455554 4555543 34444555555
No 138
>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A
Probab=98.20 E-value=2.8e-06 Score=91.45 Aligned_cols=43 Identities=21% Similarity=0.333 Sum_probs=29.6
Q ss_pred CCCeEEEEE-ccCCCChHHHHHHHHHHHH------hcCCeEEEeecccCC
Q psy11993 409 GRPFVMAFC-GVNGVGKSTNLAKICFWLI------ENNLNVLIAACDTFR 451 (630)
Q Consensus 409 g~p~vi~lv-GpNGvGKTTllakLA~~l~------~~ggkVlI~~~Dt~R 451 (630)
+++.+|+|+ |--|+||||++..||..+. ..+.+|+++++|...
T Consensus 109 ~~~~vIav~s~KGGvGKTT~a~nLA~~LA~~g~~~~~g~rVlliD~D~~~ 158 (403)
T 3ez9_A 109 KSPYVIFVVNLKGGVSKTVSTVTLAHALRVHQDLLRHDLRILVIDLDPQA 158 (403)
T ss_dssp CSCEEEEECCC--------CHHHHHHHHHSCGGGGGGCCCEEEEEESSSS
T ss_pred CCceEEEEEcCCCCchHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCCCC
Confidence 345889998 6679999999999999987 578999999999854
No 139
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=98.20 E-value=5.3e-06 Score=92.58 Aligned_cols=134 Identities=10% Similarity=-0.015 Sum_probs=78.7
Q ss_pred hhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEee-cccCCccHHHHHHHHHhhhcccCCCcCCcchhhhHhh
Q psy11993 405 AKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAA-CDTFRAGAVEQLRTHVRHLCSLHPAAKHGGREMVQLF 483 (630)
Q Consensus 405 ~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~-~Dt~R~ga~eQLr~~~~~l~~~~~~~~~tv~env~l~ 483 (630)
.+.+| ++++|+||||+||||++..|++.+.+.+.++.++. .+. ..++...+..++
T Consensus 277 ~i~~G--~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~ee~-----~~~l~~~~~~~g----------------- 332 (525)
T 1tf7_A 277 GFFKD--SIILATGATGTGKTLLVSRFVENACANKERAILFAYEES-----RAQLLRNAYSWG----------------- 332 (525)
T ss_dssp SEESS--CEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESSSC-----HHHHHHHHHTTS-----------------
T ss_pred CCCCC--cEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEEeCC-----HHHHHHHHHHcC-----------------
Confidence 35678 89999999999999999999999888776664443 332 235444333222
Q ss_pred hccCCCCHHHHHHHHHHHhhhcC-CCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCccHH---HH-HHH
Q psy11993 484 EKGYGKDPAEIAFRAISHARDMH-IDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAV---DQ-LVK 558 (630)
Q Consensus 484 ~~~~~~d~~~ia~~ai~~a~~~~-~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~Dav---~q-l~~ 558 (630)
.+..+ ... ..... .+.-....+|+++++..+++++. .+|+ +|++| |+.++|.. .| ...
T Consensus 333 -----~~~~~----~~~-~g~~~~~~~~p~~LS~g~~q~~~~a~~l~-----~~p~-llilD-p~~~Ld~~~~~~~~~~~ 395 (525)
T 1tf7_A 333 -----MDFEE----MER-QNLLKIVCAYPESAGLEDHLQIIKSEIND-----FKPA-RIAID-SLSALARGVSNNAFRQF 395 (525)
T ss_dssp -----CCHHH----HHH-TTSEEECCCCGGGSCHHHHHHHHHHHHHT-----TCCS-EEEEE-CHHHHTSSSCHHHHHHH
T ss_pred -----CCHHH----HHh-CCCEEEEEeccccCCHHHHHHHHHHHHHh-----hCCC-EEEEc-ChHHHHhhCChHHHHHH
Confidence 11111 110 00000 11123345888888888777776 7884 55577 99988754 11 122
Q ss_pred HHHHHhhcccCCCCCCeeEEEEccc
Q psy11993 559 FNNAMADHSLSDNPHLIDGIVLTKF 583 (630)
Q Consensus 559 f~~~l~~~~~~~~~~~i~gIIlTK~ 583 (630)
+.+.+..+.. .+++.+++|..
T Consensus 396 i~~ll~~l~~----~g~tvilvsh~ 416 (525)
T 1tf7_A 396 VIGVTGYAKQ----EEITGLFTNTS 416 (525)
T ss_dssp HHHHHHHHHH----TTCEEEEEEEC
T ss_pred HHHHHHHHHh----CCCEEEEEECc
Confidence 2333333322 36778888774
No 140
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=98.19 E-value=3.2e-05 Score=80.85 Aligned_cols=180 Identities=17% Similarity=0.126 Sum_probs=94.9
Q ss_pred CeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHH-----------HHHHHHHhhhcccCCCc--CCcch
Q psy11993 411 PFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAV-----------EQLRTHVRHLCSLHPAA--KHGGR 477 (630)
Q Consensus 411 p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~-----------eQLr~~~~~l~~~~~~~--~~tv~ 477 (630)
.++|+|.|-=||||||+..+||..|...|.+|+++++|++-.... ...+.. .......... -....
T Consensus 48 aKVIAIaGKGGVGKTTtavNLA~aLA~~GkkVllID~Dpq~~s~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~d~i~~~~ 126 (314)
T 3fwy_A 48 AKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQIGCDPKHDSTFTLTGSLVPTVIDVLKDV-DFHPEELRPEDFVFEGF 126 (314)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEESSSCCTTHHHHTSCCCCHHHHHHHT-TSCGGGCCHHHHCEECG
T ss_pred ceEEEEECCCccCHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccCCCCCcchhhHhhh-ccccccccHhHheeecC
Confidence 489999999999999999999999999999999999997432211 010000 0000000000 00111
Q ss_pred hhhHhhhccC-----CCCHHHHHHHHHHHh----hhcCCCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEecccc
Q psy11993 478 EMVQLFEKGY-----GKDPAEIAFRAISHA----RDMHIDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALV 548 (630)
Q Consensus 478 env~l~~~~~-----~~d~~~ia~~ai~~a----~~~~~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~ 548 (630)
.++.+.+.+. +...... ...+..+ ....||++++|+++...... +..+| ...|.+|++..+-.
T Consensus 127 ~~i~~v~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~d~~D~v~iD~~~~~~~~~-~~~al------~aAd~viIvt~~e~ 198 (314)
T 3fwy_A 127 NGVMCVEAGGPPAGTGCGGYVV-GQTVKLLKQHHLLDDTDVVIFDVLGDVVCGG-FAAPL------QHADQAVVVTANDF 198 (314)
T ss_dssp GGCEEEECCCCCTTCSCTTHHH-HHHHHHHHHTTTTSSCSEEEEEECCSSCCGG-GGGGG------GTCSEEEEEECSSH
T ss_pred CCeEEEeCCCCcccchhhhccH-HHHHHHHHhcchhhcCceEeeccCCcchhhh-hHhHH------hhCCeEEEEeCCcH
Confidence 1222222111 1111111 1122221 23468999999987643211 11112 23577888877632
Q ss_pred CccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcccCCcCccHHHHHHHHHHhCCcEEE
Q psy11993 549 GNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTIDDKVGAAISMTYITGQPIVF 606 (630)
Q Consensus 549 g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK~D~~~~~~G~~ls~~~~~g~PI~f 606 (630)
.++.-+..+.+.+..+..... ..+.|+|+++.+.. ..+-.++...+.|+.+
T Consensus 199 --~Al~~~~~l~~~i~~~~~~~~-~~l~GiI~n~~~~~----~~v~~~a~~~~~~~lg 249 (314)
T 3fwy_A 199 --DSIYAMNRIIAAVQAKSKNYK-VRLAGCVANRSRAT----DEVDRFCKETNFRRLA 249 (314)
T ss_dssp --HHHHHHHHHHHHHHTTTTTCC-CEEEEEEEESCSCC----HHHHHHHHHHTCCEEE
T ss_pred --HHHHHHHHHHHHHHHHhccCC-CceEEEEEcCCCch----hHHHHHHHHhCCeEEE
Confidence 122222233333443333222 34679999987653 2345667788888865
No 141
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=98.18 E-value=9.3e-06 Score=92.36 Aligned_cols=65 Identities=15% Similarity=0.073 Sum_probs=30.2
Q ss_pred hHHHHHHhhhCCccCCccchHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCccCCccchHHHHHHHHHHHHHHH
Q psy11993 312 GMFSLFRGLVGSKNLTKSDMKPILEKMKDHLIAKNVAADIAVKLCDSVALKLEGKVLGTFESVANTVKSTLTDALVQI 389 (630)
Q Consensus 312 ~~~~~~~~~~~~~~l~~~~l~~~l~~l~~~Li~~~V~~~ia~~l~~~v~~~l~g~~~~~~~~~~~~v~~~l~~~L~~i 389 (630)
.+-..|+.+.+ |++.++..+|...+-.| +.+.+.++..+.+++...+.++...+...+.+.+.++
T Consensus 40 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (611)
T 3izq_1 40 TLKAQLQDYQG---WDNLSLKLALFDNNFDL----------ESTLAELKKTLKKKKTPKKPIAAANGSANVTQKLANI 104 (611)
T ss_dssp THHHHHHHHHC---CCSSHHHHHHHHTTTCS----------SHHHHHHHHTTCSSSCC--------------------
T ss_pred HHHHHHHHhcC---cchhHHHHHHHHhhccH----------HHHHHHHHHHhccccccCCCChHHHHHHHHHHHHHhh
Confidence 44456666665 78877665555444333 6778888888888877777777766666666666554
No 142
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A
Probab=98.17 E-value=4e-06 Score=90.05 Aligned_cols=41 Identities=17% Similarity=0.285 Sum_probs=35.6
Q ss_pred CCeEEEEE-ccCCCChHHHHHHHHHHHH------hcCCeEEEeecccC
Q psy11993 410 RPFVMAFC-GVNGVGKSTNLAKICFWLI------ENNLNVLIAACDTF 450 (630)
Q Consensus 410 ~p~vi~lv-GpNGvGKTTllakLA~~l~------~~ggkVlI~~~Dt~ 450 (630)
++.+|+|+ |--|+||||++..||..+. ..+.+|+++++|+.
T Consensus 107 ~~~vIav~s~KGGvGKTT~a~nLA~~La~~~~~~~~g~rVlliD~D~q 154 (398)
T 3ez2_A 107 EAYVIFISNLKGGVSKTVSTVSLAHAMRAHPHLLMEDLRILVIDLDPQ 154 (398)
T ss_dssp SCEEEEECCSSSSSSHHHHHHHHHHHHHHCTTTGGGCCCEEEEEECTT
T ss_pred CCeEEEEEeCCCCccHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCCC
Confidence 45889998 6668999999999999987 46889999999984
No 143
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=98.15 E-value=1.7e-05 Score=78.07 Aligned_cols=42 Identities=14% Similarity=0.102 Sum_probs=36.7
Q ss_pred hccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeeccc
Q psy11993 406 KKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDT 449 (630)
Q Consensus 406 i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt 449 (630)
+.+| ++++|+||||+||||++..++..+.+.+++|++++.+.
T Consensus 20 l~~G--~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~ 61 (247)
T 2dr3_A 20 IPER--NVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEE 61 (247)
T ss_dssp EETT--CEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred CCCC--cEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccC
Confidence 4567 89999999999999999999887777888999988765
No 144
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=98.15 E-value=1.9e-05 Score=80.45 Aligned_cols=41 Identities=20% Similarity=0.177 Sum_probs=32.8
Q ss_pred hccCCCeEEEEEccCCCChHHHHHHHHHHHHhc----------CCeEEEeecc
Q psy11993 406 KKQGRPFVMAFCGVNGVGKSTNLAKICFWLIEN----------NLNVLIAACD 448 (630)
Q Consensus 406 i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~----------ggkVlI~~~D 448 (630)
+.+| ++++|+||||+||||++..|++.+... +++|++++..
T Consensus 27 l~~G--~i~~i~G~~GsGKTtl~~~l~~~~~~g~~~~g~~~~~~~~v~~~~~e 77 (279)
T 1nlf_A 27 MVAG--TVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAE 77 (279)
T ss_dssp EETT--SEEEEEESTTSSHHHHHHHHHHHHHTCCCTTCCCCCCCCCEEEEESS
T ss_pred ccCC--CEEEEEcCCCCCHHHHHHHHHHHHhcCCCcCCCccCCCccEEEEECC
Confidence 4677 899999999999999999999876542 4677666543
No 145
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=98.12 E-value=1.4e-06 Score=101.49 Aligned_cols=39 Identities=23% Similarity=0.154 Sum_probs=31.6
Q ss_pred hhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHH-hcCCe
Q psy11993 398 ILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLI-ENNLN 441 (630)
Q Consensus 398 iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~-~~ggk 441 (630)
++++++|. | ++++|+||||+||||+++.|++... ++.|.
T Consensus 568 vl~disl~---g--~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~ 607 (765)
T 1ewq_A 568 VPNDLEMA---H--ELVLITGPNMAGKSTFLRQTALIALLAQVGS 607 (765)
T ss_dssp CCEEEEES---S--CEEEEESCSSSSHHHHHHHHHHHHHHHTTTC
T ss_pred EeeeccCC---C--cEEEEECCCCCChHHHHHHHHhhhhhcccCc
Confidence 45567665 6 8999999999999999999999764 55554
No 146
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=98.11 E-value=1.2e-06 Score=93.45 Aligned_cols=52 Identities=17% Similarity=0.141 Sum_probs=46.0
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccC
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTF 450 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~ 450 (630)
++++++++.+.+| ++++|+|||||||||+++.|++++.+..|.|.+.+.+.+
T Consensus 163 ~~~~~l~~~i~~G--~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~~e~ 214 (361)
T 2gza_A 163 DYMSFLRRAVQLE--RVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDVPEL 214 (361)
T ss_dssp CHHHHHHHHHHTT--CCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESSSCC
T ss_pred HHHHHHHHHHhcC--CEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCcccc
Confidence 3567889999999 899999999999999999999999999999999865443
No 147
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=98.10 E-value=1.8e-05 Score=89.40 Aligned_cols=44 Identities=27% Similarity=0.400 Sum_probs=39.0
Q ss_pred CCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccH
Q psy11993 410 RPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGA 454 (630)
Q Consensus 410 ~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga 454 (630)
.+.++++.|..|+||||+...||..+...|.+|+++++|+ +...
T Consensus 7 ~~~i~~~sgkGGvGKTT~a~~lA~~lA~~G~rVLlvd~D~-~~~l 50 (589)
T 1ihu_A 7 IPPYLFFTGKGGVGKTSISCATAIRLAEQGKRVLLVSTDP-ASNV 50 (589)
T ss_dssp CCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEECCT-TCCH
T ss_pred CCEEEEEeCCCcCHHHHHHHHHHHHHHHCCCcEEEEECCC-CcCH
Confidence 3478888999999999999999999999999999999998 5443
No 148
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=98.09 E-value=2.1e-05 Score=83.53 Aligned_cols=42 Identities=24% Similarity=0.305 Sum_probs=36.2
Q ss_pred eEEEEEccCCCChHHHHHHHHHHHH--hcCCeEEEeecccCCccH
Q psy11993 412 FVMAFCGVNGVGKSTNLAKICFWLI--ENNLNVLIAACDTFRAGA 454 (630)
Q Consensus 412 ~vi~lvGpNGvGKTTllakLA~~l~--~~ggkVlI~~~Dt~R~ga 454 (630)
.++++-|..|+||||+.+.||..+. ..|.+|+++++|. +...
T Consensus 19 ~i~v~sgKGGvGKTTvaanLA~~lA~~~~G~rVLLvD~D~-~~~l 62 (354)
T 2woj_A 19 KWIFVGGKGGVGKTTSSCSIAIQMALSQPNKQFLLISTDP-AHNL 62 (354)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHHCTTSCEEEEECCS-SCCH
T ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEECCC-CCCH
Confidence 4666668999999999999999998 8899999999999 5443
No 149
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=98.09 E-value=4.2e-06 Score=82.36 Aligned_cols=27 Identities=15% Similarity=0.163 Sum_probs=24.4
Q ss_pred hccCCCeEEEEEccCCCChHHHHHHHHHH
Q psy11993 406 KKQGRPFVMAFCGVNGVGKSTNLAKICFW 434 (630)
Q Consensus 406 i~~g~p~vi~lvGpNGvGKTTllakLA~~ 434 (630)
+++| ++++|+||||+||||++..|++.
T Consensus 21 i~~G--~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 21 IETG--SITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp EETT--SEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcCC--eEEEEECCCCCcHHHHHHHHHHH
Confidence 4567 89999999999999999999985
No 150
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=98.08 E-value=6.2e-06 Score=80.49 Aligned_cols=41 Identities=22% Similarity=0.267 Sum_probs=34.4
Q ss_pred CCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCC
Q psy11993 410 RPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFR 451 (630)
Q Consensus 410 ~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R 451 (630)
++..|+|+|..||||||++..|+..+... .++.+++.|...
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~~~-~~~~~i~~d~~~ 77 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNLKDK-YKIACIAGDVIA 77 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHHTTT-CCEEEEEEETTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhccC-CeEEEEECCCCC
Confidence 34789999999999999999999887554 788888888753
No 151
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=98.06 E-value=4e-06 Score=93.57 Aligned_cols=52 Identities=15% Similarity=0.120 Sum_probs=47.0
Q ss_pred hhhhhhhhh-hhccCCCeEEEEEccCCCChHHHHHH--HHHHHHhcCCeEEEeeccc
Q psy11993 396 VDILRDALE-AKKQGRPFVMAFCGVNGVGKSTNLAK--ICFWLIENNLNVLIAACDT 449 (630)
Q Consensus 396 ~~iL~~i~~-~i~~g~p~vi~lvGpNGvGKTTllak--LA~~l~~~ggkVlI~~~Dt 449 (630)
..+|++|++ .+++| ++++|+|||||||||++.. +++.+.+..|.|++.+.+.
T Consensus 25 ~~~Ld~i~~G~i~~G--e~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~ 79 (525)
T 1tf7_A 25 IEGFDDISHGGLPIG--RSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEET 79 (525)
T ss_dssp CTTHHHHTTSSEETT--SEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSC
T ss_pred chhHHHhcCCCCCCC--eEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCC
Confidence 568999999 99999 9999999999999999999 6788888889999988773
No 152
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=98.04 E-value=2.5e-07 Score=96.18 Aligned_cols=44 Identities=20% Similarity=0.230 Sum_probs=20.5
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHH-HHhcCCeEEEeeccc
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFW-LIENNLNVLIAACDT 449 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~-l~~~ggkVlI~~~Dt 449 (630)
.++++++| .|+|+|+|||||||+++.|++. +.+..+ |.+.+.+.
T Consensus 12 ~~l~~~~~--------~I~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~~~g~~~ 56 (301)
T 2qnr_A 12 SVKKGFEF--------TLMVVGESGLGKSTLINSLFLTDLYPERV-ISGAAEKI 56 (301)
T ss_dssp ------CE--------EEEEEEETTSSHHHHHHHHHC-----------------
T ss_pred EEEcCCCE--------EEEEECCCCCCHHHHHHHHhCCCccCCCC-cccCCccc
Confidence 35555554 4599999999999999999986 666666 66555443
No 153
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=98.04 E-value=1.1e-06 Score=83.97 Aligned_cols=108 Identities=12% Similarity=0.150 Sum_probs=61.3
Q ss_pred eEEEEEccCCCChHHHHHHHHHHHHhc---CCeEEEeecccCCcc--HHHHHHH-HHh----hhcccCCCcCCcchhhhH
Q psy11993 412 FVMAFCGVNGVGKSTNLAKICFWLIEN---NLNVLIAACDTFRAG--AVEQLRT-HVR----HLCSLHPAAKHGGREMVQ 481 (630)
Q Consensus 412 ~vi~lvGpNGvGKTTllakLA~~l~~~---ggkVlI~~~Dt~R~g--a~eQLr~-~~~----~l~~~~~~~~~tv~env~ 481 (630)
++++|+|++||||||++..|++++.+. .|.|.+.+.+.+... ..+.+|. ... ++.+.. ..
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~----------~~ 72 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVK----------LA 72 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSE----------EE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCc----------EE
Confidence 589999999999999999999999998 466777666643322 1223342 233 121110 11
Q ss_pred hhhccCCCCHHH--HHHHHHHH-hhhcCCCeeeec-cccchhchHHHHHHHHhhhhh
Q psy11993 482 LFEKGYGKDPAE--IAFRAISH-ARDMHIDVVLID-TAGRMQDNEPLMRALAKLVKV 534 (630)
Q Consensus 482 l~~~~~~~d~~~--ia~~ai~~-a~~~~~D~vlID-TaGr~~~~~~L~~aL~kl~~~ 534 (630)
++.. .++.. .+.+.+.. + .++|.++++ .+|++.++..++|++..-..+
T Consensus 73 ~i~~---~~~~~~a~l~~~i~~~l--~g~dt~i~EglSgGq~qri~lARall~~p~i 124 (171)
T 2f1r_A 73 FIRR---VSEEEGNDLDWIYERYL--SDYDLVITEGFSKAGKDRIVVVKKPEEVEHF 124 (171)
T ss_dssp EEEE---CCHHHHTCHHHHHHHHT--TTCSEEEEESCGGGCCCEEEECSSGGGGGGG
T ss_pred EEec---CChhhhhCHHHHHHhhC--CCCCEEEECCcCCCCCcEEEEEecccCCCcc
Confidence 1111 11211 12233332 2 278988776 588999999999988865444
No 154
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=98.04 E-value=7.3e-06 Score=87.26 Aligned_cols=38 Identities=26% Similarity=0.286 Sum_probs=31.8
Q ss_pred ccCCCeEEEEEccCCCChHHHHHHHHHHHHhc-CCeEEEee
Q psy11993 407 KQGRPFVMAFCGVNGVGKSTNLAKICFWLIEN-NLNVLIAA 446 (630)
Q Consensus 407 ~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~-ggkVlI~~ 446 (630)
.+| .+++|+||||||||||++.|++++.+. ++.|..+.
T Consensus 121 ~~~--g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~e 159 (356)
T 3jvv_A 121 VPR--GLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIE 159 (356)
T ss_dssp CSS--EEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEE
T ss_pred CCC--CEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEcc
Confidence 455 799999999999999999999999887 56665443
No 155
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=98.03 E-value=3.3e-06 Score=99.87 Aligned_cols=36 Identities=19% Similarity=0.222 Sum_probs=31.2
Q ss_pred hhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHH
Q psy11993 398 ILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWL 435 (630)
Q Consensus 398 iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l 435 (630)
++.+++|.+.+| ++++|+||||+||||+++.|+...
T Consensus 662 V~ndvsl~~~~g--~i~~ItGPNGaGKSTlLr~i~~i~ 697 (918)
T 3thx_B 662 VPNNTDLSEDSE--RVMIITGPNMGGKSSYIKQVALIT 697 (918)
T ss_dssp CCEEEEECTTSC--CEEEEESCCCHHHHHHHHHHHHHH
T ss_pred ecccccccCCCC--eEEEEECCCCCchHHHHHHHHHHH
Confidence 566788888778 899999999999999999998643
No 156
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=98.01 E-value=4.5e-05 Score=80.07 Aligned_cols=40 Identities=23% Similarity=0.263 Sum_probs=36.0
Q ss_pred CeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccC
Q psy11993 411 PFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTF 450 (630)
Q Consensus 411 p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~ 450 (630)
..++++-|..|+||||+.+.||..+...|.+|+++++|+.
T Consensus 19 ~~i~v~sgkGGvGKTTva~~LA~~lA~~G~rVllvD~D~~ 58 (329)
T 2woo_A 19 LKWIFVGGKGGVGKTTTSCSLAIQMSKVRSSVLLISTDPA 58 (329)
T ss_dssp CCEEEEECSSSSSHHHHHHHHHHHHHTSSSCEEEEECCTT
T ss_pred CEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEEECCCC
Confidence 3566777999999999999999999999999999999984
No 157
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=98.00 E-value=1.2e-06 Score=96.82 Aligned_cols=52 Identities=21% Similarity=0.133 Sum_probs=46.7
Q ss_pred hhhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccC
Q psy11993 396 VDILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTF 450 (630)
Q Consensus 396 ~~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~ 450 (630)
+.+|++++|.+.+ ++++|+|||||||||++++|++++.++.|+|.+.+.+..
T Consensus 17 ~~~l~~vsl~i~~---e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~ 68 (483)
T 3euj_A 17 WNGFFARTFDFDE---LVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRNTTEA 68 (483)
T ss_dssp ETTEEEEEEECCS---SEEEEECCTTSSHHHHHHHHHHHHCCCTTTCCCCCTTSC
T ss_pred cccccceEEEEcc---ceEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEEcc
Confidence 4578889998865 699999999999999999999999999999999988764
No 158
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=97.99 E-value=1.2e-06 Score=99.78 Aligned_cols=37 Identities=19% Similarity=0.073 Sum_probs=27.9
Q ss_pred EEEEEccCCCChHHHHHHHHHHHHh-cCCeEEEeeccc
Q psy11993 413 VMAFCGVNGVGKSTNLAKICFWLIE-NNLNVLIAACDT 449 (630)
Q Consensus 413 vi~lvGpNGvGKTTllakLA~~l~~-~ggkVlI~~~Dt 449 (630)
.++|||||||||||++..|++++.| ..|.|.+.+.++
T Consensus 47 ~iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i 84 (608)
T 3szr_A 47 AIAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVL 84 (608)
T ss_dssp CEECCCCTTSCHHHHHHHHHSCC-------CCCSCEEE
T ss_pred eEEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEE
Confidence 4999999999999999999999888 688888877763
No 159
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=97.99 E-value=2.5e-06 Score=90.51 Aligned_cols=50 Identities=22% Similarity=0.194 Sum_probs=44.3
Q ss_pred hhhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecc
Q psy11993 396 VDILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACD 448 (630)
Q Consensus 396 ~~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~D 448 (630)
..+|+++ |.+.+| ++++|+||||+||||++++|++++.++.+.|.+++.+
T Consensus 59 ~~ald~l-l~i~~G--q~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~~ 108 (347)
T 2obl_A 59 VRAIDGL-LTCGIG--QRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGER 108 (347)
T ss_dssp CHHHHHH-SCEETT--CEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCC
T ss_pred CEEEEee-eeecCC--CEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEeccc
Confidence 4578888 899999 9999999999999999999999998887888777754
No 160
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=97.97 E-value=2.2e-05 Score=83.25 Aligned_cols=39 Identities=26% Similarity=0.318 Sum_probs=36.1
Q ss_pred CeEEEEEccCCCChHHHHHHHHHHHH--hcCCeEEEeeccc
Q psy11993 411 PFVMAFCGVNGVGKSTNLAKICFWLI--ENNLNVLIAACDT 449 (630)
Q Consensus 411 p~vi~lvGpNGvGKTTllakLA~~l~--~~ggkVlI~~~Dt 449 (630)
..++++.|..|+||||+++.||..+. ..+.+|+++++|.
T Consensus 18 ~~i~~~~gkGGvGKTt~a~~lA~~la~~~~g~~vllid~D~ 58 (348)
T 3io3_A 18 LKWIFVGGKGGVGKTTTSSSVAVQLALAQPNEQFLLISTDP 58 (348)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHHHHHCTTSCEEEEECCS
T ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEECCC
Confidence 47888899999999999999999998 7899999999995
No 161
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=97.97 E-value=6.2e-06 Score=97.85 Aligned_cols=35 Identities=26% Similarity=0.207 Sum_probs=29.8
Q ss_pred hhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHH
Q psy11993 398 ILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFW 434 (630)
Q Consensus 398 iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~ 434 (630)
++.++++.+..| ++++|+||||+||||+++.|+..
T Consensus 651 v~ndisl~~~~g--~i~~ItGpNGsGKSTlLr~ial~ 685 (934)
T 3thx_A 651 IPNDVYFEKDKQ--MFHIITGPNMGGKSTYIRQTGVI 685 (934)
T ss_dssp CCEEEEEETTTB--CEEEEECCTTSSHHHHHHHHHHH
T ss_pred ecccceeecCCC--eEEEEECCCCCCHHHHHHHHHHH
Confidence 455778877777 89999999999999999999753
No 162
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=97.95 E-value=3.8e-05 Score=81.90 Aligned_cols=40 Identities=23% Similarity=0.240 Sum_probs=36.1
Q ss_pred CCCeEEEEEc-cCCCChHHHHHHHHHHHHhcCCeEEEeecc
Q psy11993 409 GRPFVMAFCG-VNGVGKSTNLAKICFWLIENNLNVLIAACD 448 (630)
Q Consensus 409 g~p~vi~lvG-pNGvGKTTllakLA~~l~~~ggkVlI~~~D 448 (630)
+++++|+|+| ..|+||||++..||..+...+.+|+++++|
T Consensus 141 ~~~kvIav~s~KGGvGKTT~a~nLA~~La~~g~rVlliD~D 181 (373)
T 3fkq_A 141 DKSSVVIFTSPCGGVGTSTVAAACAIAHANMGKKVFYLNIE 181 (373)
T ss_dssp TSCEEEEEECSSTTSSHHHHHHHHHHHHHHHTCCEEEEECC
T ss_pred CCceEEEEECCCCCChHHHHHHHHHHHHHhCCCCEEEEECC
Confidence 3458999996 779999999999999998889999999999
No 163
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.92 E-value=8.7e-06 Score=79.30 Aligned_cols=40 Identities=28% Similarity=0.336 Sum_probs=33.9
Q ss_pred eEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCC
Q psy11993 412 FVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFR 451 (630)
Q Consensus 412 ~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R 451 (630)
++++|+|||||||||+++.|++.+.+.|..+.++..|-|-
T Consensus 23 ~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~~ 62 (208)
T 3c8u_A 23 QLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGFH 62 (208)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGGB
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCCc
Confidence 9999999999999999999999998875456666666543
No 164
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=97.92 E-value=0.00012 Score=76.88 Aligned_cols=66 Identities=14% Similarity=-0.029 Sum_probs=41.8
Q ss_pred eccccchhchHHHHHHHHhhhh-hcCCCeEEEEeccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEccc
Q psy11993 512 IDTAGRMQDNEPLMRALAKLVK-VNQPDLLLFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKF 583 (630)
Q Consensus 512 IDTaGr~~~~~~L~~aL~kl~~-~~~Pd~VLlV~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK~ 583 (630)
...|||+++...+++.|+-... ..+| .+|++|||++++|...+.. +.+.+.++.. .+.+.+++|+-
T Consensus 247 ~~lS~G~~~~~~la~~l~~a~~l~~~p-~~lllDEp~~~LD~~~~~~-l~~~l~~~~~----~~~~vi~~sH~ 313 (339)
T 3qkt_A 247 TFLSGGERIALGLAFRLAMSLYLAGEI-SLLILDEPTPYLDEERRRK-LITIMERYLK----KIPQVILVSHD 313 (339)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHTTTTT-CEEEEECCCTTCCHHHHHH-HHHHHHHTGG----GSSEEEEEESC
T ss_pred HHCCHHHHHHHHHHHHHHHHHHhcCCC-CEEEEECCCCCCCHHHHHH-HHHHHHHHHh----cCCEEEEEECh
Confidence 4578999987666554432111 1456 5677999999999876543 3445555543 23567888873
No 165
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=97.92 E-value=4e-06 Score=100.43 Aligned_cols=36 Identities=28% Similarity=0.251 Sum_probs=30.0
Q ss_pred hhhhhhhhhcc-------CCCeEEEEEccCCCChHHHHHHHHHHHH
Q psy11993 398 ILRDALEAKKQ-------GRPFVMAFCGVNGVGKSTNLAKICFWLI 436 (630)
Q Consensus 398 iL~~i~~~i~~-------g~p~vi~lvGpNGvGKTTllakLA~~l~ 436 (630)
++.+++|.+.+ | ++++|+||||+||||+++.| +++.
T Consensus 771 v~ndi~l~~~~~~~~~~~g--~i~~ItGpNgsGKSTlLr~i-Gl~~ 813 (1022)
T 2o8b_B 771 IPNDILIGCEEEEQENGKA--YCVLVTGPNMGGKSTLMRQA-GLLA 813 (1022)
T ss_dssp CCEEEEESCCCSCC---CC--CEEEEECCTTSSHHHHHHHH-HHHH
T ss_pred EeeeeeeccccccccCCCC--cEEEEECCCCCChHHHHHHH-HHHH
Confidence 56677777655 5 89999999999999999999 6664
No 166
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.91 E-value=5.6e-06 Score=79.57 Aligned_cols=41 Identities=20% Similarity=0.269 Sum_probs=31.3
Q ss_pred hhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCC
Q psy11993 405 AKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFR 451 (630)
Q Consensus 405 ~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R 451 (630)
...+| ++++|+|||||||||++++|++.+ + .+.+.+.++.|
T Consensus 3 ~m~~g--~ii~l~Gp~GsGKSTl~~~L~~~~-~---~~~~~~~~~~~ 43 (205)
T 3tr0_A 3 AMNKA--NLFIISAPSGAGKTSLVRALVKAL-A---EIKISISHTTR 43 (205)
T ss_dssp --CCC--CEEEEECCTTSCHHHHHHHHHHHS-S---SEEECCCEECS
T ss_pred cCCCC--cEEEEECcCCCCHHHHHHHHHhhC-C---CeEEeceeccC
Confidence 44566 899999999999999999999986 2 56666555544
No 167
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=97.91 E-value=4.5e-06 Score=81.26 Aligned_cols=36 Identities=25% Similarity=0.263 Sum_probs=25.6
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHH
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLI 436 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~ 436 (630)
.++++ ..+.+| ++++|+|||||||||++++|++++.
T Consensus 10 ~~~~~--~~i~~G--ei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 10 PTARG--QPAAVG--RVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp -----------CC--CEEEEECSTTSSHHHHHHHHHHHST
T ss_pred cCCCC--CCCCCC--CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 34555 456788 8999999999999999999999984
No 168
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.91 E-value=1.6e-05 Score=83.52 Aligned_cols=46 Identities=26% Similarity=0.350 Sum_probs=39.8
Q ss_pred cCCCeEEEEEccCCCChHHHHHHHHHHHH--hcCCeEEEeecccCCcc
Q psy11993 408 QGRPFVMAFCGVNGVGKSTNLAKICFWLI--ENNLNVLIAACDTFRAG 453 (630)
Q Consensus 408 ~g~p~vi~lvGpNGvGKTTllakLA~~l~--~~ggkVlI~~~Dt~R~g 453 (630)
.++|.+++|+|||||||||++++|++++. +.+++|.++..|.|-..
T Consensus 89 ~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~f~~~ 136 (321)
T 3tqc_A 89 PKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDGFLYS 136 (321)
T ss_dssp CCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGBCC
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeecccccc
Confidence 34678999999999999999999999987 46789999999987544
No 169
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=97.90 E-value=0.00087 Score=73.24 Aligned_cols=53 Identities=17% Similarity=0.109 Sum_probs=44.4
Q ss_pred chhhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHh-cCCeEEEeeccc
Q psy11993 395 RVDILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIE-NNLNVLIAACDT 449 (630)
Q Consensus 395 ~~~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~-~ggkVlI~~~Dt 449 (630)
.+..|+++..-+.+| .+++|+|++|+||||++..||..+.+ .+.+|++++...
T Consensus 189 G~~~LD~~~gGl~~G--~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E~ 242 (454)
T 2r6a_A 189 GFTELDRMTSGFQRS--DLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLEM 242 (454)
T ss_dssp SCHHHHHHHSSBCTT--CEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESSS
T ss_pred CcHHHHhhcCCCCCC--CEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCC
Confidence 356677777667778 89999999999999999999998876 466999998775
No 170
>1nrj_A Signal recognition particle receptor alpha subunit homolog; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: d.110.4.4
Probab=97.90 E-value=5.2e-05 Score=69.01 Aligned_cols=92 Identities=22% Similarity=0.329 Sum_probs=64.2
Q ss_pred CcceEEEeecCceEEEEeccCCC-CCCchHHHHHHHhhhccccCC--------C--ce---ee-------cCeEEEEEEe
Q psy11993 1 MLDFFTIFSKGGIVLWYFQSASQ-IFTPSLNALIKSVILQERGGN--------Q--VF---EH-------NGLVLKHKLD 59 (630)
Q Consensus 1 Mld~~~i~t~gG~vLw~~~~~~~-~~~~~in~li~~~~leer~~~--------~--~~---~~-------~~~~l~w~~~ 59 (630)
|+|+|.|||..|=||+.+..-+. .....||++|.+.|..--+-+ . .| .. ++|+..|...
T Consensus 1 M~dQf~IFTp~GqVLy~yn~l~kKf~e~qiN~fIS~LitsP~~~~~~~s~~~~~~~k~~~~~i~~~~k~~~~f~~~~~~s 80 (158)
T 1nrj_A 1 MFDQLAVFTPQGQVLYQYNCLGKKFSEIQINSFISQLITSPVTRKESVANANTDGFDFNLLTINSEHKNSPSFNALFYLN 80 (158)
T ss_dssp CCCEEEEECTTCBEEEEEETTSCCCCHHHHHHHHHHHHHSCCCGGGEECSGGGTTCCEEEEECC--------CEEEEEEE
T ss_pred CcceEEEeccCceEEEEecccCcchHHHHHHHHHHHHhcCCcccccccccccccccceeeEeecccccCCCCeeEEEEec
Confidence 99999999999999999874322 345689999999997542211 1 12 22 8999999999
Q ss_pred ccccEEEEEEecc-ccchhc-HHHHHHHHHHHHHH
Q psy11993 60 NEFDLVFVVGFQK-ILQLSY-VDKLLDDVHLEFRD 92 (630)
Q Consensus 60 n~~~lvfv~~yq~-~l~l~y-~d~ll~~~~~~f~~ 92 (630)
+...|+||+.|-. .|+|.- .+..|+.+.+++-.
T Consensus 81 kQP~LyfVvtyaeqsleLn~Eae~~L~l~~~LWdS 115 (158)
T 1nrj_A 81 KQPELYFVVTFAEQTLELNQETQQTLALVLKLWNS 115 (158)
T ss_dssp ETTEEEEEEEESSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcEEEEEEecccccccCcHHHHHHHHHHHHHHh
Confidence 9999999999966 223332 23366666655533
No 171
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=97.90 E-value=4.5e-06 Score=91.25 Aligned_cols=49 Identities=20% Similarity=0.192 Sum_probs=45.2
Q ss_pred hhhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeec
Q psy11993 396 VDILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAAC 447 (630)
Q Consensus 396 ~~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~ 447 (630)
..+|+++ |.+.+| ++++|+|||||||||+++.|++++.++.|.|.+.+.
T Consensus 145 ~~vld~v-l~i~~G--q~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~ 193 (438)
T 2dpy_A 145 VRAINAL-LTVGRG--QRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGE 193 (438)
T ss_dssp CHHHHHH-SCCBTT--CEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESC
T ss_pred ceEEeee-EEecCC--CEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEece
Confidence 4588999 999999 999999999999999999999999998888888886
No 172
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=97.90 E-value=9.9e-06 Score=86.65 Aligned_cols=41 Identities=17% Similarity=0.293 Sum_probs=36.1
Q ss_pred hccCCCeEEEEEccCCCChHHHHHHHHHHHHhc-CCeEEEeecc
Q psy11993 406 KKQGRPFVMAFCGVNGVGKSTNLAKICFWLIEN-NLNVLIAACD 448 (630)
Q Consensus 406 i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~-ggkVlI~~~D 448 (630)
+.+| .+++|+|||||||||+++.|++++.+. .|+|.+++.+
T Consensus 133 ~~~g--~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~ 174 (372)
T 2ewv_A 133 HRKM--GLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDP 174 (372)
T ss_dssp TSSS--EEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESS
T ss_pred hcCC--CEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEeccc
Confidence 4566 899999999999999999999999987 7999887754
No 173
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.89 E-value=1.2e-05 Score=77.98 Aligned_cols=44 Identities=20% Similarity=0.244 Sum_probs=39.3
Q ss_pred CCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCcc
Q psy11993 410 RPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAG 453 (630)
Q Consensus 410 ~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~g 453 (630)
++.+++|+|++||||||++..|++.+.+.++.|.+.+.|.+...
T Consensus 21 ~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~~~~ 64 (201)
T 1rz3_A 21 GRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHIVE 64 (201)
T ss_dssp SSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGCCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCcccCC
Confidence 34899999999999999999999999999999999998876543
No 174
>3of5_A Dethiobiotin synthetase; structural genomics, center for structural genomics of infec diseases, csgid, ligase; 1.52A {Francisella tularensis subsp}
Probab=97.89 E-value=0.00073 Score=67.21 Aligned_cols=176 Identities=15% Similarity=0.132 Sum_probs=89.9
Q ss_pred eEEEEEcc-CCCChHHHHHHHHHHHHhcCCeEEEee-----cccCCccH-HHHHHHHHhhhcccCCC-------cCCcch
Q psy11993 412 FVMAFCGV-NGVGKSTNLAKICFWLIENNLNVLIAA-----CDTFRAGA-VEQLRTHVRHLCSLHPA-------AKHGGR 477 (630)
Q Consensus 412 ~vi~lvGp-NGvGKTTllakLA~~l~~~ggkVlI~~-----~Dt~R~ga-~eQLr~~~~~l~~~~~~-------~~~tv~ 477 (630)
..+.|.|. +|+||||+...|+..+...|.+|.+.- ++....+- ..+... ...+...+. .....-
T Consensus 5 k~i~Itgt~t~vGKT~vt~~L~~~l~~~G~~V~~~KPv~~g~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~~~~~p~s 82 (228)
T 3of5_A 5 KKFFIIGTDTEVGKTYISTKLIEVCEHQNIKSLCLKPVASGQSQFSELCEDVESIL--NAYKHKFTAAEINLISFNQAVA 82 (228)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEEECSEEESBCSSSSSBHHHHHHH--HHTTTSSCHHHHCSEEESSSSC
T ss_pred cEEEEEeCCCCCCHHHHHHHHHHHHHHCCCeeEEecceeecCccCCCCCChHHHHH--HhcCCCCChhhEEEEEECCCCC
Confidence 57889998 799999999999999999999988752 33211110 011111 111111000 000000
Q ss_pred hhhHhhhccCCCCHHHHHHHHHHHhhhcCCCeeeeccccchhc-------hHHHHHHHHhhhhhcCCCeEEEEeccccCc
Q psy11993 478 EMVQLFEKGYGKDPAEIAFRAISHARDMHIDVVLIDTAGRMQD-------NEPLMRALAKLVKVNQPDLLLFVGEALVGN 550 (630)
Q Consensus 478 env~l~~~~~~~d~~~ia~~ai~~a~~~~~D~vlIDTaGr~~~-------~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~ 550 (630)
.++.--..+...+... ..+.++.....++|+++||++|+... ...+++.+. -| +++|.++..+
T Consensus 83 p~~aa~~~~~~i~~~~-i~~~~~~~l~~~~D~vlIEgaggl~~p~~~~~~~adla~~l~------~p--viLV~~~~~~- 152 (228)
T 3of5_A 83 PHIIAAKTKVDISIEN-LKQFIEDKYNQDLDILFIEGAGGLLTPYSDHTTQLDLIKALQ------IP--VLLVSAIKVG- 152 (228)
T ss_dssp HHHHHHHTTCCCCHHH-HHHHHHGGGGSSCSEEEEEEEEETTCBSSSSCBHHHHHHHHT------CC--EEEEEECSTT-
T ss_pred HHHHHHHcCCCCCHHH-HHHHHHHHHHccCCEEEEECCCccccccccchhHHHHHHHcC------CC--EEEEEcCCcc-
Confidence 1111101111123322 23334331235799999999987642 233333332 33 6667777544
Q ss_pred cHHHHHHHHHHHHhhcccCCCCCCeeEEEEcccCCcCccHHHHHHHH-HHhCCcEE
Q psy11993 551 EAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTIDDKVGAAISMT-YITGQPIV 605 (630)
Q Consensus 551 Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK~D~~~~~~G~~ls~~-~~~g~PI~ 605 (630)
.++.+..-.+.+.+ ....+.|+|+|+++.........+... ..+|.|+.
T Consensus 153 -~i~~~~~~~~~l~~-----~~~~i~GvIlN~~~~~~~~~~~~~~~l~~~~g~pvL 202 (228)
T 3of5_A 153 -CINHTLLTINELNR-----HNIKLAGWIANCNDSNIKYIDEQINTIEELSGYKCS 202 (228)
T ss_dssp -HHHHHHHHHHHHHH-----TTCCEEEEEEEECCTTCSCHHHHHHHHHHHHSCCCS
T ss_pred -hHHHHHHHHHHHHh-----CCCcEEEEEEECcCCcchhhHHHHHHHHHhhCCCEE
Confidence 23333222222221 234688999999987423334444444 45799884
No 175
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=97.87 E-value=3.1e-06 Score=83.70 Aligned_cols=36 Identities=19% Similarity=0.192 Sum_probs=22.2
Q ss_pred hhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHH-HHH
Q psy11993 398 ILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKIC-FWL 435 (630)
Q Consensus 398 iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA-~~l 435 (630)
...+++|.+.+| ++++|+|||||||||++++|+ +.+
T Consensus 16 ~~~~~sl~v~~G--~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 16 TQGPGSMLKSVG--VILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp ------CCEECC--CEEEEECSCC----CHHHHHHC---
T ss_pred ccCCCCcccCCC--CEEEEECCCCCCHHHHHHHHHhcCC
Confidence 345688899999 899999999999999999999 987
No 176
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=97.83 E-value=7.6e-06 Score=91.17 Aligned_cols=53 Identities=21% Similarity=0.236 Sum_probs=45.8
Q ss_pred hhhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccC
Q psy11993 396 VDILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTF 450 (630)
Q Consensus 396 ~~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~ 450 (630)
..+++++++.+..| .+++|+||||||||||++.|++++.+..+.|.+.+.+.+
T Consensus 247 ~~~l~~l~~~v~~g--~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~ 299 (511)
T 2oap_1 247 SGVLAYLWLAIEHK--FSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREI 299 (511)
T ss_dssp HHHHHHHHHHHHTT--CCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCC
T ss_pred HHHHHHHHHHHhCC--CEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccc
Confidence 45677888888888 789999999999999999999999888888888776533
No 177
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=97.83 E-value=2e-05 Score=92.14 Aligned_cols=36 Identities=22% Similarity=0.176 Sum_probs=30.5
Q ss_pred hhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHH
Q psy11993 398 ILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLI 436 (630)
Q Consensus 398 iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~ 436 (630)
++.++++. .+| ++++|+||||+||||+++.|++...
T Consensus 597 vlndisl~-~~g--~i~~ItGpNGsGKSTlLr~iagl~~ 632 (800)
T 1wb9_A 597 IANPLNLS-PQR--RMLIITGPNMGGKSTYMRQTALIAL 632 (800)
T ss_dssp CCEEEEEC-SSS--CEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred eeeccccc-CCC--cEEEEECCCCCChHHHHHHHHHHHH
Confidence 56677777 556 8999999999999999999998653
No 178
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.82 E-value=0.00018 Score=76.46 Aligned_cols=40 Identities=13% Similarity=0.059 Sum_probs=35.4
Q ss_pred ccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecc
Q psy11993 407 KQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACD 448 (630)
Q Consensus 407 ~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~D 448 (630)
++| .++.|+||+|+||||++..|+..+.+.+++|++++..
T Consensus 59 ~~G--~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E 98 (356)
T 3hr8_A 59 PRG--RIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAE 98 (356)
T ss_dssp ETT--EEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred cCC--cEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecc
Confidence 456 8999999999999999999999998888998777654
No 179
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=97.81 E-value=1.7e-05 Score=76.90 Aligned_cols=36 Identities=28% Similarity=0.371 Sum_probs=31.9
Q ss_pred eEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccC
Q psy11993 412 FVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTF 450 (630)
Q Consensus 412 ~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~ 450 (630)
.+++|+|||||||||+++.|++.+.+ ++.++..|.+
T Consensus 7 ~~i~i~G~~GsGKSTl~~~l~~~~~~---~i~~v~~d~~ 42 (211)
T 3asz_A 7 FVIGIAGGTASGKTTLAQALARTLGE---RVALLPMDHY 42 (211)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHGG---GEEEEEGGGC
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhCC---CeEEEecCcc
Confidence 89999999999999999999999865 6777777763
No 180
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=97.81 E-value=1.5e-05 Score=86.52 Aligned_cols=41 Identities=24% Similarity=0.174 Sum_probs=36.6
Q ss_pred ccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeeccc
Q psy11993 407 KQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDT 449 (630)
Q Consensus 407 ~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt 449 (630)
.+| .+++|+||||||||||++.|++++.+..|+|.+++-+.
T Consensus 165 ~~g--gii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~i 205 (418)
T 1p9r_A 165 RPH--GIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPI 205 (418)
T ss_dssp SSS--EEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSC
T ss_pred hcC--CeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccc
Confidence 355 79999999999999999999999988899999987654
No 181
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.81 E-value=8.6e-05 Score=78.32 Aligned_cols=157 Identities=12% Similarity=0.119 Sum_probs=67.2
Q ss_pred HHcCCCHHHHHHHHHHHHHHhcCCccCCccchHHHHHHHHHHHHHHHcCCCcchhhhhhhhh-hhccCCCeEEEEEccCC
Q psy11993 343 IAKNVAADIAVKLCDSVALKLEGKVLGTFESVANTVKSTLTDALVQILSPKRRVDILRDALE-AKKQGRPFVMAFCGVNG 421 (630)
Q Consensus 343 i~~~V~~~ia~~l~~~v~~~l~g~~~~~~~~~~~~v~~~l~~~L~~il~~~~~~~iL~~i~~-~i~~g~p~vi~lvGpNG 421 (630)
..+++...-+.++++.+...+. ..|....... +....+..-......|+.+.- -++.| .++.|+||+|
T Consensus 64 ~~~~is~~~~~~~~~~a~~~~~----~~~~~~~~~~-----~~~~~~~~i~TG~~~LD~~LgGGl~~G--~i~~I~G~~G 132 (343)
T 1v5w_A 64 NVKGLSEAKVDKIKEAANKLIE----PGFLTAFEYS-----EKRKMVFHITTGSQEFDKLLGGGIESM--AITEAFGEFR 132 (343)
T ss_dssp --------------------------CCSEEHHHHH-----HHGGGCCCBCCSCHHHHHHTTSSBCSS--EEEEEECCTT
T ss_pred HhhCCCHHHHHHHHHHHHhhcc----cCCCcHHHHH-----hhhcccceeecCChhHHHHhcCCCCCC--eEEEEECCCC
Confidence 3467777777788777766543 2344332221 111111110112233333321 24556 8999999999
Q ss_pred CChHHHHHHHHHHHH-h-----cCCeEEEeeccc-CCccHHHHHHHHHhhhcccCCCcCCcchhhhHhhhccCCCC-HHH
Q psy11993 422 VGKSTNLAKICFWLI-E-----NNLNVLIAACDT-FRAGAVEQLRTHVRHLCSLHPAAKHGGREMVQLFEKGYGKD-PAE 493 (630)
Q Consensus 422 vGKTTllakLA~~l~-~-----~ggkVlI~~~Dt-~R~ga~eQLr~~~~~l~~~~~~~~~tv~env~l~~~~~~~d-~~~ 493 (630)
+||||++..||.... + .+++|++++... |+ .+++..++..++.... .+.+++.+.. .+..+ ...
T Consensus 133 sGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~---~~~l~~~~~~~g~~~~----~~l~~l~~~~-~~~~e~~~~ 204 (343)
T 1v5w_A 133 TGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFR---PDRLRDIADRFNVDHD----AVLDNVLYAR-AYTSEHQME 204 (343)
T ss_dssp CTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCC---HHHHHHHHHHTTCCHH----HHHHTEEEEE-CCSTTHHHH
T ss_pred CCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCC---HHHHHHHHHHcCCCHH----HHHhceeEee-cCCHHHHHH
Confidence 999999999998643 2 467887777653 33 3456665555543210 1112332221 11122 222
Q ss_pred HHHHHHHHhhh--cCCCeeeeccccch
Q psy11993 494 IAFRAISHARD--MHIDVVLIDTAGRM 518 (630)
Q Consensus 494 ia~~ai~~a~~--~~~D~vlIDTaGr~ 518 (630)
....+...+.. .++++|+||....+
T Consensus 205 ll~~l~~~i~~~~~~~~lvVIDsl~~l 231 (343)
T 1v5w_A 205 LLDYVAAKFHEEAGIFKLLIIDSIMAL 231 (343)
T ss_dssp HHHHHHHHHHHSCSSEEEEEEETSGGG
T ss_pred HHHHHHHHHHhcCCCccEEEEechHHH
Confidence 22223333444 56889999985543
No 182
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.78 E-value=4.8e-05 Score=79.51 Aligned_cols=154 Identities=12% Similarity=0.111 Sum_probs=66.0
Q ss_pred HcCCCHHHHHHHHHHHHHHhcCCccCCccchHHHHHHHHHHHHHHHcCCCcchhhhhhhh-hhhccCCCeEEEEEccCCC
Q psy11993 344 AKNVAADIAVKLCDSVALKLEGKVLGTFESVANTVKSTLTDALVQILSPKRRVDILRDAL-EAKKQGRPFVMAFCGVNGV 422 (630)
Q Consensus 344 ~~~V~~~ia~~l~~~v~~~l~g~~~~~~~~~~~~v~~~l~~~L~~il~~~~~~~iL~~i~-~~i~~g~p~vi~lvGpNGv 422 (630)
.+++...-+.++++.+...+.. .|....... +....+..-......|+.+. --++.| .++.|+||+|+
T Consensus 50 ~~g~s~~~~~~~~~~~~~~~~~----~~~~~~~~~-----~~~~~~~~i~TG~~~LD~~L~GGl~~G--~i~~i~G~~Gs 118 (324)
T 2z43_A 50 AAGIPLSTAQKIIKEARDALDI----RFKTALEVK-----KERMNVKKISTGSQALDGLLAGGIETR--TMTEFFGEFGS 118 (324)
T ss_dssp --------------------------CCCCHHHHH-----HHHCSCCEECCSCHHHHHHTTTSEETT--SEEEEEESTTS
T ss_pred hhCCCHHHHHHHHHHHHhhccc----Cccchhhhh-----hhhccCCcccCCchhHHHhcCCCCCCC--cEEEEECCCCC
Confidence 4577777777777766654431 233322211 11110000011223343332 134566 89999999999
Q ss_pred ChHHHHHHHHHHHHhc------CCeEEEeeccc-CCccHHHHHHHHHhhhcccCCCcCCcchhhhHhhhccCCCCHH---
Q psy11993 423 GKSTNLAKICFWLIEN------NLNVLIAACDT-FRAGAVEQLRTHVRHLCSLHPAAKHGGREMVQLFEKGYGKDPA--- 492 (630)
Q Consensus 423 GKTTllakLA~~l~~~------ggkVlI~~~Dt-~R~ga~eQLr~~~~~l~~~~~~~~~tv~env~l~~~~~~~d~~--- 492 (630)
||||++..||...... +++|++++... |+ .+++..++..++.... .+.+++.+.. . .+..
T Consensus 119 GKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~---~~~l~~~~~~~g~~~~----~~~~~l~~~~-~--~~~~~~~ 188 (324)
T 2z43_A 119 GKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFR---WERIENMAKALGLDID----NVMNNIYYIR-A--INTDHQI 188 (324)
T ss_dssp SHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCC---HHHHHHHHHHTTCCHH----HHHHTEEEEE-C--CSHHHHH
T ss_pred CHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCC---HHHHHHHHHHhCCCHH----HHhccEEEEe-C--CCHHHHH
Confidence 9999999999875433 67888777654 44 3456656555543210 0112222211 1 1111
Q ss_pred HHHHHHHHHhhh-cCCCeeeeccccch
Q psy11993 493 EIAFRAISHARD-MHIDVVLIDTAGRM 518 (630)
Q Consensus 493 ~ia~~ai~~a~~-~~~D~vlIDTaGr~ 518 (630)
.....+...+.. .++++|+||....+
T Consensus 189 ~~l~~l~~~~~~~~~~~lvVIDsl~~l 215 (324)
T 2z43_A 189 AIVDDLQELVSKDPSIKLIVVDSVTSH 215 (324)
T ss_dssp HHHHHHHHHHHHCTTEEEEEETTTTHH
T ss_pred HHHHHHHHHHHhccCCCEEEEeCcHHH
Confidence 122233333444 56889999985544
No 183
>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal alpha-beta the C-terminal all beta domain., structural genomics; 2.00A {Nostoc SP}
Probab=97.75 E-value=0.00025 Score=75.92 Aligned_cols=36 Identities=22% Similarity=0.366 Sum_probs=33.9
Q ss_pred eEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeec
Q psy11993 412 FVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAAC 447 (630)
Q Consensus 412 ~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~ 447 (630)
.++.+.|..|+||||+...||..+...|.+|+++++
T Consensus 3 ~i~~~~gkGG~GKTt~a~~la~~la~~g~~vllvd~ 38 (374)
T 3igf_A 3 LILTFLGKSGVARTKIAIAAAKLLASQGKRVLLAGL 38 (374)
T ss_dssp EEEEEECSBHHHHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCeEEEeC
Confidence 578888999999999999999999999999999998
No 184
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=97.74 E-value=0.0002 Score=74.29 Aligned_cols=94 Identities=18% Similarity=0.238 Sum_probs=50.3
Q ss_pred CCCeeeeccccchhch------HHHHHHHHhhhhhcCCCeEEEEeccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEE
Q psy11993 506 HIDVVLIDTAGRMQDN------EPLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIV 579 (630)
Q Consensus 506 ~~D~vlIDTaGr~~~~------~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gII 579 (630)
++.++++||||..... ..+....... ....|.+++|.++..+....+ ...+.+.+... .....+|
T Consensus 58 ~~~i~lvDTPG~~~~~~~~~l~~~~~~~~~~~--l~~aD~il~VvD~~~~~~~~~-~~~~~~~l~~~------~~pvilV 128 (308)
T 3iev_A 58 EAQIIFLDTPGIYEPKKSDVLGHSMVEIAKQS--LEEADVILFMIDATEGWRPRD-EEIYQNFIKPL------NKPVIVV 128 (308)
T ss_dssp TEEEEEEECCCCCCCCTTCHHHHHHHHHHHHH--HHHCSEEEEEEETTTBSCHHH-HHHHHHHTGGG------CCCEEEE
T ss_pred CCeEEEEECcCCCccccchhHHHHHHHHHHHH--hhcCCEEEEEEeCCCCCCchh-HHHHHHHHHhc------CCCEEEE
Confidence 4568899999975432 2222221111 135788999999887654333 22223334322 1345789
Q ss_pred EcccCCc-Cc-cHHHH-HHHHHHhC--CcEEEEe
Q psy11993 580 LTKFDTI-DD-KVGAA-ISMTYITG--QPIVFVG 608 (630)
Q Consensus 580 lTK~D~~-~~-~~G~~-ls~~~~~g--~PI~fvg 608 (630)
+||+|.. +. ..-.. -.+....+ .|+..++
T Consensus 129 ~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~i~~vS 162 (308)
T 3iev_A 129 INKIDKIGPAKNVLPLIDEIHKKHPELTEIVPIS 162 (308)
T ss_dssp EECGGGSSSGGGGHHHHHHHHHHCTTCCCEEECB
T ss_pred EECccCCCCHHHHHHHHHHHHHhccCCCeEEEEe
Confidence 9999975 21 12222 22334444 5666654
No 185
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.74 E-value=1.7e-05 Score=81.06 Aligned_cols=51 Identities=12% Similarity=0.049 Sum_probs=40.3
Q ss_pred chhhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCC
Q psy11993 395 RVDILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFR 451 (630)
Q Consensus 395 ~~~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R 451 (630)
...+++++++.++.| ++|+||||+||||+++.||+.+.+ +.|.+.+.+...
T Consensus 32 ~~~~l~~~~l~~~~G----vlL~Gp~GtGKTtLakala~~~~~--~~i~i~g~~l~~ 82 (274)
T 2x8a_A 32 NPDQFKALGLVTPAG----VLLAGPPGCGKTLLAKAVANESGL--NFISVKGPELLN 82 (274)
T ss_dssp SHHHHHHTTCCCCSE----EEEESSTTSCHHHHHHHHHHHTTC--EEEEEETTTTCS
T ss_pred CHHHHHHcCCCCCCe----EEEECCCCCcHHHHHHHHHHHcCC--CEEEEEcHHHHh
Confidence 356788888876655 899999999999999999998754 467777766643
No 186
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=97.72 E-value=0.0001 Score=69.58 Aligned_cols=23 Identities=17% Similarity=0.226 Sum_probs=20.7
Q ss_pred CeEEEEEccCCCChHHHHHHHHH
Q psy11993 411 PFVMAFCGVNGVGKSTNLAKICF 433 (630)
Q Consensus 411 p~vi~lvGpNGvGKTTllakLA~ 433 (630)
...|+|+|++||||||++..|++
T Consensus 48 ~~~i~vvG~~g~GKSsll~~l~~ 70 (193)
T 2ged_A 48 QPSIIIAGPQNSGKTSLLTLLTT 70 (193)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 35899999999999999999875
No 187
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=97.72 E-value=0.00018 Score=66.34 Aligned_cols=98 Identities=15% Similarity=0.094 Sum_probs=56.7
Q ss_pred CCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcccCCc
Q psy11993 507 IDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTI 586 (630)
Q Consensus 507 ~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK~D~~ 586 (630)
+.+.++||+|...........+ ...+.+++|.+++.. ...+.+..+...+..+.. +...-.+|+||+|..
T Consensus 64 ~~~~l~Dt~G~~~~~~~~~~~~------~~~d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~ 133 (179)
T 1z0f_A 64 IKLQIWDTAGQERFRAVTRSYY------RGAAGALMVYDITRR-STYNHLSSWLTDARNLTN---PNTVIILIGNKADLE 133 (179)
T ss_dssp EEEEEEECTTGGGTCHHHHHHH------HTCSEEEEEEETTCH-HHHHTHHHHHHHHHHHSC---TTCEEEEEEECTTCG
T ss_pred EEEEEEECCCChHhhhhHHHHh------ccCCEEEEEEeCcCH-HHHHHHHHHHHHHHHhcC---CCCcEEEEEECcccc
Confidence 4577899999765443332222 355788888887654 233333444333433321 223457889999974
Q ss_pred Cc---cHHHHHHHHHHhCCcEEEEe--cCCCCc
Q psy11993 587 DD---KVGAAISMTYITGQPIVFVG--TGQTYT 614 (630)
Q Consensus 587 ~~---~~G~~ls~~~~~g~PI~fvg--~Gq~v~ 614 (630)
+. ..-.+..++...+.|+.+++ +|+.+.
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 166 (179)
T 1z0f_A 134 AQRDVTYEEAKQFAEENGLLFLEASAKTGENVE 166 (179)
T ss_dssp GGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHH
T ss_pred cccccCHHHHHHHHHHcCCEEEEEeCCCCCCHH
Confidence 21 23455666777788877765 444443
No 188
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=97.71 E-value=2e-06 Score=89.21 Aligned_cols=43 Identities=28% Similarity=0.214 Sum_probs=29.4
Q ss_pred ccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEE---eecccCC
Q psy11993 407 KQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLI---AACDTFR 451 (630)
Q Consensus 407 ~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI---~~~Dt~R 451 (630)
..| ++++|+|||||||||+++.|++.+.+..|.|.+ .+.++.+
T Consensus 167 l~g--eiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~ 212 (301)
T 1u0l_A 167 LKG--KISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTT 212 (301)
T ss_dssp HSS--SEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCC
T ss_pred hcC--CeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCcee
Confidence 356 799999999999999999999999999999998 6666644
No 189
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=97.71 E-value=5e-05 Score=79.27 Aligned_cols=35 Identities=23% Similarity=0.209 Sum_probs=26.9
Q ss_pred CeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeec
Q psy11993 411 PFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAAC 447 (630)
Q Consensus 411 p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~ 447 (630)
..+++|+|+|||||||+++.|++.. .+.+|.|+-.
T Consensus 4 i~v~~i~G~~GaGKTTll~~l~~~~--~~~~~aVi~~ 38 (318)
T 1nij_A 4 IAVTLLTGFLGAGKTTLLRHILNEQ--HGYKIAVIEN 38 (318)
T ss_dssp EEEEEEEESSSSSCHHHHHHHHHSC--CCCCEEEECS
T ss_pred ccEEEEEecCCCCHHHHHHHHHhhc--CCCcEEEEEe
Confidence 3699999999999999999999875 2334444433
No 190
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.71 E-value=1.4e-05 Score=75.97 Aligned_cols=39 Identities=23% Similarity=0.233 Sum_probs=32.1
Q ss_pred hccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecc
Q psy11993 406 KKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACD 448 (630)
Q Consensus 406 i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~D 448 (630)
+.+| .+++|+|||||||||+++.|++. +..+.|.+.+-|
T Consensus 6 i~~g--~~i~l~G~~GsGKSTl~~~La~~--~~~g~i~i~~d~ 44 (191)
T 1zp6_A 6 DLGG--NILLLSGHPGSGKSTIAEALANL--PGVPKVHFHSDD 44 (191)
T ss_dssp CCTT--EEEEEEECTTSCHHHHHHHHHTC--SSSCEEEECTTH
T ss_pred CCCC--eEEEEECCCCCCHHHHHHHHHhc--cCCCeEEEcccc
Confidence 3456 89999999999999999999987 556777776544
No 191
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=97.71 E-value=5.4e-05 Score=80.11 Aligned_cols=31 Identities=26% Similarity=0.262 Sum_probs=23.2
Q ss_pred hhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHH
Q psy11993 398 ILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICF 433 (630)
Q Consensus 398 iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~ 433 (630)
+|+++++.++ .|+|||++||||||++..|++
T Consensus 26 ~l~~i~~~lp-----~I~vvG~~~sGKSSLln~l~g 56 (360)
T 3t34_A 26 ALPTLWDSLP-----AIAVVGGQSSGKSSVLESIVG 56 (360)
T ss_dssp CC----CCCC-----EEEEECBTTSSHHHHHHHHHT
T ss_pred ccccccccCC-----EEEEECCCCCcHHHHHHHHhC
Confidence 5666655442 899999999999999999998
No 192
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.69 E-value=1.3e-05 Score=76.54 Aligned_cols=26 Identities=31% Similarity=0.319 Sum_probs=24.2
Q ss_pred eEEEEEccCCCChHHHHHHHHHHHHh
Q psy11993 412 FVMAFCGVNGVGKSTNLAKICFWLIE 437 (630)
Q Consensus 412 ~vi~lvGpNGvGKTTllakLA~~l~~ 437 (630)
++++|+|||||||||++++|++.+.+
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~~ 27 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYPD 27 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCGG
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCCc
Confidence 68999999999999999999999874
No 193
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=97.69 E-value=0.00042 Score=62.67 Aligned_cols=93 Identities=14% Similarity=0.069 Sum_probs=53.2
Q ss_pred CCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcccCCc
Q psy11993 507 IDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTI 586 (630)
Q Consensus 507 ~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK~D~~ 586 (630)
+++.++||+|........ .... ...+.++++.+.... +....+..+...+..+... ......+|+||.|..
T Consensus 51 ~~~~~~D~~G~~~~~~~~-~~~~-----~~~~~~i~v~d~~~~-~~~~~~~~~~~~i~~~~~~--~~~p~iiv~nK~Dl~ 121 (166)
T 2ce2_X 51 CLLDILDTAGQEEYSAMR-DQYM-----RTGEGFLCVFAINNT-KSFEDIHQYREQIKRVKDS--DDVPMVLVGNKSDLA 121 (166)
T ss_dssp EEEEEEECCCCSSCCHHH-HHHH-----HHCSEEEEEEETTCH-HHHHHHHHHHHHHHHHHTC--SCCCEEEEEECTTCS
T ss_pred EEEEEEECCCchhhhHHH-HHhh-----ccCCEEEEEEECCCH-HHHHHHHHHHHHHHHhcCC--CCCcEEEEEEchhhh
Confidence 457789999976533322 2222 235677777776533 3334444444444443321 123457899999964
Q ss_pred C--ccHHHHHHHHHHhCCcEEEEe
Q psy11993 587 D--DKVGAAISMTYITGQPIVFVG 608 (630)
Q Consensus 587 ~--~~~G~~ls~~~~~g~PI~fvg 608 (630)
. ...-.+..+....+.|+..++
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~S 145 (166)
T 2ce2_X 122 ARTVESRQAQDLARSYGIPYIETS 145 (166)
T ss_dssp CCCSCHHHHHHHHHHHTCCEEEEC
T ss_pred hcccCHHHHHHHHHHcCCeEEEec
Confidence 2 123455566777888987766
No 194
>3fgn_A Dethiobiotin synthetase; biotin biosynthesis, BIOD, ATP-BIND ligase, magnesium, nucleotide-binding; 1.85A {Mycobacterium tuberculosis} PDB: 3fmf_A* 3fmi_A* 3fpa_A*
Probab=97.66 E-value=0.0022 Score=64.80 Aligned_cols=175 Identities=14% Similarity=0.073 Sum_probs=90.9
Q ss_pred eEEEEEccC-CCChHHHHHHHHHHHHhcCCeEEEee-----cccCCccHHHHHHHHHhhhcccCCC-cCCcchhhhHhhh
Q psy11993 412 FVMAFCGVN-GVGKSTNLAKICFWLIENNLNVLIAA-----CDTFRAGAVEQLRTHVRHLCSLHPA-AKHGGREMVQLFE 484 (630)
Q Consensus 412 ~vi~lvGpN-GvGKTTllakLA~~l~~~ggkVlI~~-----~Dt~R~ga~eQLr~~~~~l~~~~~~-~~~tv~env~l~~ 484 (630)
..+.|.|.. ||||||+..-|+..+...+.+|...- +...- .....++..........++ ......+++.--.
T Consensus 27 ~~i~Itgt~t~vGKT~vt~gL~~~l~~~G~~V~~fKPv~~g~~~~~-~D~~~~~~~~g~~~~~~~~~~~~p~sP~~aa~~ 105 (251)
T 3fgn_A 27 TILVVTGTGTGVGKTVVCAALASAARQAGIDVAVCKPVQTGTARGD-DDLAEVGRLAGVTQLAGLARYPQPMAPAAAAEH 105 (251)
T ss_dssp EEEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEEEEEECCGGGTC-CHHHHHHHHHCCCEEEEEEECSSSSCHHHHHHH
T ss_pred CEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEEeeeecCCCCCC-HHHHHHHHHcCCCCCCCCeeECCCCChHHHHHH
Confidence 678899986 99999999999999999998887763 31111 2223334333221100000 0000111111101
Q ss_pred ccC-CCCHHHHHHHHHHHhhhcCCCeeeeccccchhc--------hHHHHHHHHhhhhhcCCCeEEEEeccccCccHHHH
Q psy11993 485 KGY-GKDPAEIAFRAISHARDMHIDVVLIDTAGRMQD--------NEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQ 555 (630)
Q Consensus 485 ~~~-~~d~~~ia~~ai~~a~~~~~D~vlIDTaGr~~~--------~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~Dav~q 555 (630)
.+. ..+... ..+.++.+ ...+|+++||.+|+... ...+++.+. ..+|+|.++..| .++.
T Consensus 106 ~~~~~~~~~~-i~~~~~~l-~~~~D~vlIEGagGl~~pl~~~~~~~adla~~l~--------~pVILV~~~~~g--~i~~ 173 (251)
T 3fgn_A 106 AGMALPARDQ-IVRLIADL-DRPGRLTLVEGAGGLLVELAEPGVTLRDVAVDVA--------AAALVVVTADLG--TLNH 173 (251)
T ss_dssp TTCCCCCHHH-HHHHHHTT-CCTTCEEEEECSSSTTCEEETTTEEHHHHHHHTT--------CEEEEEECSSTT--HHHH
T ss_pred cCCCCCCHHH-HHHHHHHH-HhcCCEEEEECCCCCcCCcCcccchHHHHHHHcC--------CCEEEEEcCCCc--cHHH
Confidence 111 123322 33333333 34689999999988631 122333222 347778877654 2333
Q ss_pred HHHHHHHHhhcccCCCCCCeeEEEEcccCCc-CccHHHHHHHHHHhCCcEE
Q psy11993 556 LVKFNNAMADHSLSDNPHLIDGIVLTKFDTI-DDKVGAAISMTYITGQPIV 605 (630)
Q Consensus 556 l~~f~~~l~~~~~~~~~~~i~gIIlTK~D~~-~~~~G~~ls~~~~~g~PI~ 605 (630)
+..-.+.+.+ ....+.|+|+|++... +......+.+.... .|+.
T Consensus 174 ~~lt~~~l~~-----~g~~i~GvIlN~v~~~~~~~~~~~~~~le~~-vpvL 218 (251)
T 3fgn_A 174 TKLTLEALAA-----QQVSCAGLVIGSWPDPPGLVAASNRSALARI-AMVR 218 (251)
T ss_dssp HHHHHHHHHH-----TTCCEEEEEEEEECSSCCHHHHHHHHHHHHH-SCEE
T ss_pred HHHHHHHHHh-----CCCCEEEEEEECCCCchhhhhhhHHHHHHHh-CCEE
Confidence 3222222321 2346899999999532 11223345555556 8875
No 195
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.65 E-value=4.1e-05 Score=73.92 Aligned_cols=42 Identities=21% Similarity=0.237 Sum_probs=33.1
Q ss_pred hhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeE
Q psy11993 398 ILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNV 442 (630)
Q Consensus 398 iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkV 442 (630)
+.....+...+| .+|+|+||+||||||+++.|++.+. ..|.+
T Consensus 14 ~~~~~~~~~~~g--~~i~l~G~sGsGKSTl~~~La~~l~-~~G~~ 55 (200)
T 3uie_A 14 KVDRQRLLDQKG--CVIWVTGLSGSGKSTLACALNQMLY-QKGKL 55 (200)
T ss_dssp HHHHHHHHTSCC--EEEEEECSTTSSHHHHHHHHHHHHH-HTTCC
T ss_pred HHHHHHhcCCCC--eEEEEECCCCCCHHHHHHHHHHHHH-hcCce
Confidence 344455555556 9999999999999999999999997 44555
No 196
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.64 E-value=4.1e-06 Score=91.04 Aligned_cols=25 Identities=24% Similarity=0.360 Sum_probs=22.0
Q ss_pred EEEEEccCCCChHHHHHHHHHHHHh
Q psy11993 413 VMAFCGVNGVGKSTNLAKICFWLIE 437 (630)
Q Consensus 413 vi~lvGpNGvGKTTllakLA~~l~~ 437 (630)
.|+|||+|||||||+++.|++...+
T Consensus 33 ~I~lvG~sGaGKSTLln~L~g~~~~ 57 (418)
T 2qag_C 33 TLMVVGESGLGKSTLINSLFLTDLY 57 (418)
T ss_dssp EEEEECCTTSSHHHHHHHHTTCCCC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCC
Confidence 3599999999999999999987653
No 197
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=97.64 E-value=0.00039 Score=65.19 Aligned_cols=90 Identities=16% Similarity=0.082 Sum_probs=53.5
Q ss_pred CCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcccCCc
Q psy11993 507 IDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTI 586 (630)
Q Consensus 507 ~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK~D~~ 586 (630)
+.+.++||+|...... +..... ...+.+++|.++..+. ....+..+...+..+.. ..-.+|+||+|..
T Consensus 93 ~~~~i~Dt~G~~~~~~-~~~~~~-----~~~d~~i~v~D~~~~~-s~~~~~~~~~~i~~~~~-----~piilv~NK~D~~ 160 (208)
T 3clv_A 93 IKFDIWDTAGQERYAS-IVPLYY-----RGATCAIVVFDISNSN-TLDRAKTWVNQLKISSN-----YIIILVANKIDKN 160 (208)
T ss_dssp EEEEEEECTTGGGCTT-THHHHH-----TTCSEEEEEEETTCHH-HHHHHHHHHHHHHHHSC-----CEEEEEEECTTCC
T ss_pred eEEEEEECCCcHHHHH-HHHHHh-----cCCCEEEEEEECCCHH-HHHHHHHHHHHHHhhCC-----CcEEEEEECCCcc
Confidence 4677999999654332 222222 3567888888876543 23333344333433321 3557899999942
Q ss_pred C--ccHHHHHHHHHHhCCcEEEEe
Q psy11993 587 D--DKVGAAISMTYITGQPIVFVG 608 (630)
Q Consensus 587 ~--~~~G~~ls~~~~~g~PI~fvg 608 (630)
. ...-.+...+...+.|+..++
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~S 184 (208)
T 3clv_A 161 KFQVDILEVQKYAQDNNLLFIQTS 184 (208)
T ss_dssp -CCSCHHHHHHHHHHTTCEEEEEC
T ss_pred cccCCHHHHHHHHHHcCCcEEEEe
Confidence 1 234566677777888887776
No 198
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.63 E-value=2.7e-05 Score=75.11 Aligned_cols=40 Identities=15% Similarity=-0.056 Sum_probs=24.7
Q ss_pred cchhhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHH
Q psy11993 394 RRVDILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWL 435 (630)
Q Consensus 394 ~~~~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l 435 (630)
....++++++|.+.++ .+|+|+||+||||||++..|+..+
T Consensus 10 ~~~~~~~~~~~~~~~~--~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 10 GVDLGTENLYFQSNAM--VRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp --------------CC--CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCCCCceeEecCCC--CEEEEEcCCCCCHHHHHHHHHHHc
Confidence 3345788999999887 899999999999999999999887
No 199
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=97.62 E-value=1.8e-05 Score=78.51 Aligned_cols=42 Identities=17% Similarity=0.128 Sum_probs=33.2
Q ss_pred hccCCCeEEEEEccCCCChHHHHHHHHHHHHh--cCCeEEEeeccc
Q psy11993 406 KKQGRPFVMAFCGVNGVGKSTNLAKICFWLIE--NNLNVLIAACDT 449 (630)
Q Consensus 406 i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~--~ggkVlI~~~Dt 449 (630)
.++| ++++|+|||||||||+++.|++.+.+ ..+.|.+.+.+.
T Consensus 13 ~~~G--~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~ 56 (219)
T 1s96_A 13 MAQG--TLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQP 56 (219)
T ss_dssp --CC--CEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCC
T ss_pred CCCC--cEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCC
Confidence 3567 89999999999999999999999874 456777666543
No 200
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=97.61 E-value=0.0001 Score=67.41 Aligned_cols=91 Identities=16% Similarity=0.200 Sum_probs=52.2
Q ss_pred CCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcccCCc
Q psy11993 507 IDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTI 586 (630)
Q Consensus 507 ~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK~D~~ 586 (630)
+.+.++||+|...... +..... ...+.+++|.++... +..+.+..+...+..+. +.....+|+||.|..
T Consensus 54 ~~~~l~Dt~G~~~~~~-~~~~~~-----~~~d~~i~v~d~~~~-~s~~~~~~~~~~i~~~~----~~~piilv~nK~Dl~ 122 (168)
T 1z2a_A 54 VRLMLWDTAGQEEFDA-ITKAYY-----RGAQACVLVFSTTDR-ESFEAISSWREKVVAEV----GDIPTALVQNKIDLL 122 (168)
T ss_dssp EEEEEECCTTGGGTTC-CCHHHH-----TTCCEEEEEEETTCH-HHHHTHHHHHHHHHHHH----CSCCEEEEEECGGGG
T ss_pred EEEEEEcCCCcHhHHH-HHHHHh-----cCCCEEEEEEECcCH-HHHHHHHHHHHHHHHhC----CCCCEEEEEECcccC
Confidence 4677899999654221 122222 356788888877643 23333434444443332 123457899999964
Q ss_pred Cc---cHHHHHHHHHHhCCcEEEEe
Q psy11993 587 DD---KVGAAISMTYITGQPIVFVG 608 (630)
Q Consensus 587 ~~---~~G~~ls~~~~~g~PI~fvg 608 (630)
.. ..-.+..++...+.|+..++
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~S 147 (168)
T 1z2a_A 123 DDSCIKNEEAEGLAKRLKLRFYRTS 147 (168)
T ss_dssp GGCSSCHHHHHHHHHHHTCEEEECB
T ss_pred cccccCHHHHHHHHHHcCCeEEEEe
Confidence 21 23455566777888887766
No 201
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=97.61 E-value=9.1e-05 Score=68.62 Aligned_cols=101 Identities=15% Similarity=0.152 Sum_probs=55.7
Q ss_pred CCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcccCCc
Q psy11993 507 IDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTI 586 (630)
Q Consensus 507 ~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK~D~~ 586 (630)
+.+.++||+|....... ..... ...+.+++|.+.+... ..+.+..+...+..+.........-.+|.||+|..
T Consensus 56 ~~~~~~Dt~G~~~~~~~-~~~~~-----~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~ 128 (178)
T 2hxs_A 56 VTLQIWDIGGQTIGGKM-LDKYI-----YGAQGVLLVYDITNYQ-SFENLEDWYTVVKKVSEESETQPLVALVGNKIDLE 128 (178)
T ss_dssp EEEEEEECTTCCTTCTT-HHHHH-----TTCSEEEEEEETTCHH-HHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGG
T ss_pred EEEEEEECCCCccccch-hhHHH-----hhCCEEEEEEECCCHH-HHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccc
Confidence 45779999997543222 22222 3567888888876543 33334444444443321101122346889999975
Q ss_pred Cc---cHHHHHHHHHHhCCcEEEEe--cCCCCc
Q psy11993 587 DD---KVGAAISMTYITGQPIVFVG--TGQTYT 614 (630)
Q Consensus 587 ~~---~~G~~ls~~~~~g~PI~fvg--~Gq~v~ 614 (630)
+. ..-.+..++...+.|+..++ +|+.+.
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 161 (178)
T 2hxs_A 129 HMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVF 161 (178)
T ss_dssp GGCSSCHHHHHHHHHHHTCEEEEECTTTCTTHH
T ss_pred cccccCHHHHHHHHHHcCCcEEEEeCCCCCCHH
Confidence 21 12345566667788887766 444443
No 202
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=97.59 E-value=0.00023 Score=70.40 Aligned_cols=23 Identities=26% Similarity=0.325 Sum_probs=20.8
Q ss_pred CeEEEEEccCCCChHHHHHHHHH
Q psy11993 411 PFVMAFCGVNGVGKSTNLAKICF 433 (630)
Q Consensus 411 p~vi~lvGpNGvGKTTllakLA~ 433 (630)
+..|+|+|++||||||+++.|.+
T Consensus 29 ~~~i~lvG~~g~GKStlin~l~g 51 (239)
T 3lxx_A 29 QLRIVLVGKTGAGKSATGNSILG 51 (239)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHcC
Confidence 46799999999999999999984
No 203
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.59 E-value=6.4e-05 Score=72.52 Aligned_cols=35 Identities=20% Similarity=0.022 Sum_probs=30.1
Q ss_pred eEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccC
Q psy11993 412 FVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTF 450 (630)
Q Consensus 412 ~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~ 450 (630)
.+++|+|||||||||+++.|++.+ |.+.+.+-+..
T Consensus 30 ~~i~l~G~~GsGKSTl~~~L~~~~----g~~~i~~d~~~ 64 (200)
T 4eun_A 30 RHVVVMGVSGSGKTTIAHGVADET----GLEFAEADAFH 64 (200)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH----CCEEEEGGGGS
T ss_pred cEEEEECCCCCCHHHHHHHHHHhh----CCeEEcccccc
Confidence 899999999999999999999987 67777665553
No 204
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.59 E-value=2.7e-05 Score=73.59 Aligned_cols=39 Identities=21% Similarity=0.258 Sum_probs=31.3
Q ss_pred hccCCCeEEEEEccCCCChHHHHHHHHHHHHhc-CCeEEEee
Q psy11993 406 KKQGRPFVMAFCGVNGVGKSTNLAKICFWLIEN-NLNVLIAA 446 (630)
Q Consensus 406 i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~-ggkVlI~~ 446 (630)
+..| +.++|+||||+||||++..|++.+.+. +..|.+++
T Consensus 35 ~~~g--~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~ 74 (180)
T 3ec2_A 35 PEEG--KGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFD 74 (180)
T ss_dssp GGGC--CEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEE
T ss_pred ccCC--CEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEE
Confidence 3456 799999999999999999999999754 44665544
No 205
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=97.58 E-value=0.00045 Score=63.06 Aligned_cols=94 Identities=12% Similarity=0.050 Sum_probs=49.9
Q ss_pred CCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcccCCc
Q psy11993 507 IDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTI 586 (630)
Q Consensus 507 ~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK~D~~ 586 (630)
+.+.++||+|....... ..... ...+.+++|.+.... +..+.+..+...+..+.... +...-.+|+||.|..
T Consensus 51 ~~~~~~Dt~G~~~~~~~-~~~~~-----~~~~~~i~v~d~~~~-~~~~~~~~~~~~i~~~~~~~-~~~pii~v~nK~Dl~ 122 (172)
T 2erx_A 51 CTLQITDTTGSHQFPAM-QRLSI-----SKGHAFILVYSITSR-QSLEELKPIYEQICEIKGDV-ESIPIMLVGNKCDES 122 (172)
T ss_dssp EEEEEEECCSCSSCHHH-HHHHH-----HHCSEEEEEEETTCH-HHHHTTHHHHHHHHHHHC----CCCEEEEEECGGGG
T ss_pred EEEEEEECCCchhhHHH-HHHhc-----ccCCEEEEEEECcCH-HHHHHHHHHHHHHHHHhCCC-CCCCEEEEEEccccc
Confidence 45779999997654332 22222 235677877776533 23333333333343332111 112457899999964
Q ss_pred Cc---cHHHHHHHHHHhCCcEEEEe
Q psy11993 587 DD---KVGAAISMTYITGQPIVFVG 608 (630)
Q Consensus 587 ~~---~~G~~ls~~~~~g~PI~fvg 608 (630)
+. ..-.+..+....+.|+.+++
T Consensus 123 ~~~~v~~~~~~~~~~~~~~~~~~~S 147 (172)
T 2erx_A 123 PSREVQSSEAEALARTWKCAFMETS 147 (172)
T ss_dssp GGCCSCHHHHHHHHHHHTCEEEECB
T ss_pred cccccCHHHHHHHHHHhCCeEEEec
Confidence 21 12344455666777877665
No 206
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.58 E-value=0.00054 Score=72.56 Aligned_cols=41 Identities=15% Similarity=0.087 Sum_probs=36.3
Q ss_pred ccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeeccc
Q psy11993 407 KQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDT 449 (630)
Q Consensus 407 ~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt 449 (630)
++| .++.|+||+|+||||++..++..+...+++|++++.+.
T Consensus 59 ~~G--~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~ 99 (349)
T 2zr9_A 59 PRG--RVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEH 99 (349)
T ss_dssp ETT--SEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred cCC--eEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 456 89999999999999999999988888889999888764
No 207
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=97.57 E-value=0.0003 Score=73.08 Aligned_cols=110 Identities=17% Similarity=0.195 Sum_probs=64.5
Q ss_pred HcCCCHHHHHHHHHHHHHHhcCCccCCccchHHHHHHHHHHHHHHHcCCCcchhhhhhhh-hhhccCCCeEEEEEccCCC
Q psy11993 344 AKNVAADIAVKLCDSVALKLEGKVLGTFESVANTVKSTLTDALVQILSPKRRVDILRDAL-EAKKQGRPFVMAFCGVNGV 422 (630)
Q Consensus 344 ~~~V~~~ia~~l~~~v~~~l~g~~~~~~~~~~~~v~~~l~~~L~~il~~~~~~~iL~~i~-~~i~~g~p~vi~lvGpNGv 422 (630)
..++..+-|.++++.+++.+.. .|.+..... +....+..-......|+.+. =-++.| .++.|.|++|+
T Consensus 41 ~~gis~~~a~~~i~~a~~~~~~----~~~~~~~~~-----~~~~~~~~i~TG~~~LD~~l~GGl~~g--~i~~i~G~~gs 109 (322)
T 2i1q_A 41 IEGISEKAAAKMIMGARDLCDL----GFKSGIDLL-----KQRSTVWKLSTSSSELDSVLGGGLESQ--SVTEFAGVFGS 109 (322)
T ss_dssp STTCCHHHHHHHHHHHHHHTTC----SCCCTHHHH-----HHHTTCCEECCSCHHHHHHTTSSEETT--EEEEEEESTTS
T ss_pred hhCcCHHHHHHHHHHHHHhhhh----cCCcHHHHH-----HHhccCCeecCCChhHHHhcCCCccCC--eEEEEECCCCC
Confidence 3688888888888888876542 343333221 11111100011233344332 123556 89999999999
Q ss_pred ChHHHHHHHHHHH-Hh-----------cC----CeEEEeeccc-CCccHHHHHHHHHhhhcc
Q psy11993 423 GKSTNLAKICFWL-IE-----------NN----LNVLIAACDT-FRAGAVEQLRTHVRHLCS 467 (630)
Q Consensus 423 GKTTllakLA~~l-~~-----------~g----gkVlI~~~Dt-~R~ga~eQLr~~~~~l~~ 467 (630)
||||++..+|... .+ .+ ++|++++... |+ .+++..++..++.
T Consensus 110 GKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~---~~~l~~~~~~~g~ 168 (322)
T 2i1q_A 110 GKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFR---PERIMQMAEHAGI 168 (322)
T ss_dssp SHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCC---HHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCC---HHHHHHHHHHcCC
Confidence 9999999999753 22 23 6888877654 43 3566666555553
No 208
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=97.56 E-value=0.00064 Score=63.96 Aligned_cols=98 Identities=13% Similarity=0.113 Sum_probs=57.2
Q ss_pred CCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcccCCc
Q psy11993 507 IDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTI 586 (630)
Q Consensus 507 ~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK~D~~ 586 (630)
+.+.++||+|........ .... ...|.+++|.+.+.. +....+..+...+..+.. ......+|+||.|..
T Consensus 65 ~~~~i~Dt~G~~~~~~~~-~~~~-----~~~d~~i~v~d~~~~-~s~~~~~~~~~~i~~~~~---~~~p~ilv~nK~Dl~ 134 (196)
T 3tkl_A 65 IKLQIWDTAGQERFRTIT-SSYY-----RGAHGIIVVYDVTDQ-ESFNNVKQWLQEIDRYAS---ENVNKLLVGNKCDLT 134 (196)
T ss_dssp EEEEEEEECCSGGGCTTH-HHHH-----TTCSEEEEEEETTCH-HHHHTHHHHHHHHHHHSC---TTCEEEEEEECTTCT
T ss_pred EEEEEEECCCcHhhhhhH-HHHH-----hhCCEEEEEEECcCH-HHHHHHHHHHHHHHHhcC---CCCCEEEEEECcccc
Confidence 456789999965433222 2222 456788888887653 333344444444444432 123457888999964
Q ss_pred Cc---cHHHHHHHHHHhCCcEEEEe--cCCCCc
Q psy11993 587 DD---KVGAAISMTYITGQPIVFVG--TGQTYT 614 (630)
Q Consensus 587 ~~---~~G~~ls~~~~~g~PI~fvg--~Gq~v~ 614 (630)
+. ..-.+..++...+.|+..++ +|+.+.
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~ 167 (196)
T 3tkl_A 135 TKKVVDYTTAKEFADSLGIPFLETSAKNATNVE 167 (196)
T ss_dssp TTCCSCHHHHHHHHHHTTCCEEEECTTTCTTHH
T ss_pred cccccCHHHHHHHHHHcCCcEEEEeCCCCCCHH
Confidence 32 22445567777889988776 344443
No 209
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=97.55 E-value=0.00015 Score=75.14 Aligned_cols=23 Identities=39% Similarity=0.293 Sum_probs=21.1
Q ss_pred eEEEEEccCCCChHHHHHHHHHH
Q psy11993 412 FVMAFCGVNGVGKSTNLAKICFW 434 (630)
Q Consensus 412 ~vi~lvGpNGvGKTTllakLA~~ 434 (630)
.+++|+|++||||||++..|.+.
T Consensus 9 ~~VaIvG~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 9 GFIAIVGRPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp EEEEEECSSSSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
Confidence 68999999999999999999863
No 210
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=97.54 E-value=0.00073 Score=62.68 Aligned_cols=93 Identities=16% Similarity=0.055 Sum_probs=51.9
Q ss_pred CCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcccCCc
Q psy11993 507 IDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTI 586 (630)
Q Consensus 507 ~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK~D~~ 586 (630)
+.+.++||+|...... +..... ...+.+++|.+.... +....+..+...+..+... ....-.+|+||+|..
T Consensus 66 ~~~~l~Dt~G~~~~~~-~~~~~~-----~~~d~~i~v~d~~~~-~s~~~~~~~~~~i~~~~~~--~~~piilv~nK~Dl~ 136 (187)
T 2a9k_A 66 VQIDILDTAGQEDYAA-IRDNYF-----RSGEGFLCVFSITEM-ESFAATADFREQILRVKED--ENVPFLLVGNKSDLE 136 (187)
T ss_dssp EEEEEEECCCTTCCHH-HHHHHH-----HHCSEEEEEEETTCH-HHHHHHHHHHHHHHHHHCC--TTCCEEEEEECGGGG
T ss_pred EEEEEEECCCCcccHH-HHHHHh-----ccCCEEEEEEECcCH-HHHHHHHHHHHHHHHhcCC--CCCCEEEEEECcccc
Confidence 4677999999664432 222222 245677777777543 2333333333334333221 123446899999964
Q ss_pred Cc---cHHHHHHHHHHhCCcEEEEe
Q psy11993 587 DD---KVGAAISMTYITGQPIVFVG 608 (630)
Q Consensus 587 ~~---~~G~~ls~~~~~g~PI~fvg 608 (630)
+. ..-.+...+...+.|+.++.
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~S 161 (187)
T 2a9k_A 137 DKRQVSVEEAKNRAEQWNVNYVETS 161 (187)
T ss_dssp GGCCSCHHHHHHHHHHTTCEEEECC
T ss_pred ccCccCHHHHHHHHHHcCCeEEEeC
Confidence 21 23455566677788877655
No 211
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=97.54 E-value=0.00025 Score=80.00 Aligned_cols=39 Identities=28% Similarity=0.399 Sum_probs=35.7
Q ss_pred eEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccC
Q psy11993 412 FVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTF 450 (630)
Q Consensus 412 ~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~ 450 (630)
.++.+.|..|+||||+...||..+...|.+|+++++|+.
T Consensus 328 ~~~~~~~~~g~Gktt~a~~lA~~l~~~g~~vllvD~Dp~ 366 (589)
T 1ihu_A 328 GLIMLMGKGGVGKTTMAAAIAVRLADMGFDVHLTTSDPA 366 (589)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESCCC
T ss_pred eEEEEecCCCCChhhHHHHHHHHHHHCCCcEEEEeCCCc
Confidence 567778999999999999999999999999999999974
No 212
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=97.53 E-value=3e-05 Score=78.66 Aligned_cols=94 Identities=18% Similarity=0.219 Sum_probs=51.8
Q ss_pred CCeeeeccccchhch-----HHHHHHHHhhhhhcCCCeEEEEeccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEc
Q psy11993 507 IDVVLIDTAGRMQDN-----EPLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLT 581 (630)
Q Consensus 507 ~D~vlIDTaGr~~~~-----~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlT 581 (630)
..+.++||||..... ..+.+.. ....++|.+++|.+++.+.. .+..+.+.. .+. .....+++|
T Consensus 50 ~~~~l~DtpG~~~~~~~~~~~~~~~~~---~~~~~~d~vi~v~D~~~~~~---~~~~~~~~~-~~~-----~~p~ilv~N 117 (271)
T 3k53_A 50 KEFLVVDLPGIYSLTAHSIDELIARNF---ILDGNADVIVDIVDSTCLMR---NLFLTLELF-EME-----VKNIILVLN 117 (271)
T ss_dssp EEEEEEECCCCSCCCSSCHHHHHHHHH---HHTTCCSEEEEEEEGGGHHH---HHHHHHHHH-HTT-----CCSEEEEEE
T ss_pred ceEEEEeCCCccccccCCHHHHHHHHh---hhccCCcEEEEEecCCcchh---hHHHHHHHH-hcC-----CCCEEEEEE
Confidence 346799999965321 1122222 22357889999998876422 122222222 111 024578899
Q ss_pred ccCCcCccHH---HHHHHHHHhCCcEEEEe--cCCCC
Q psy11993 582 KFDTIDDKVG---AAISMTYITGQPIVFVG--TGQTY 613 (630)
Q Consensus 582 K~D~~~~~~G---~~ls~~~~~g~PI~fvg--~Gq~v 613 (630)
|+|.. ..-+ ..-.+....|.|+..+. +|+.+
T Consensus 118 K~Dl~-~~~~~~~~~~~l~~~lg~~~~~~Sa~~g~gi 153 (271)
T 3k53_A 118 KFDLL-KKKGAKIDIKKMRKELGVPVIPTNAKKGEGV 153 (271)
T ss_dssp CHHHH-HHHTCCCCHHHHHHHHSSCEEECBGGGTBTH
T ss_pred ChhcC-cccccHHHHHHHHHHcCCcEEEEEeCCCCCH
Confidence 99953 1111 13456677899988766 44443
No 213
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=97.52 E-value=0.00091 Score=60.64 Aligned_cols=93 Identities=16% Similarity=0.055 Sum_probs=50.0
Q ss_pred CCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcccCCc
Q psy11993 507 IDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTI 586 (630)
Q Consensus 507 ~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK~D~~ 586 (630)
+.+.++||+|...... +..... ...+.+++|.+.... +....+..+...+..+... ....-.+|+||+|..
T Consensus 52 ~~~~l~D~~G~~~~~~-~~~~~~-----~~~d~~i~v~d~~~~-~s~~~~~~~~~~i~~~~~~--~~~piilv~nK~Dl~ 122 (168)
T 1u8z_A 52 VQIDILDTAGQEDYAA-IRDNYF-----RSGEGFLCVFSITEM-ESFAATADFREQILRVKED--ENVPFLLVGNKSDLE 122 (168)
T ss_dssp EEEEEEECCC---CHH-HHHHHH-----HHCSEEEEEEETTCH-HHHHHHHHHHHHHHHHHCC--TTSCEEEEEECGGGG
T ss_pred EEEEEEECCCcchhHH-HHHHHh-----hcCCEEEEEEECCCH-HHHHHHHHHHHHHHHhcCC--CCCcEEEEEECcccc
Confidence 4677999999654332 222222 245677777777543 2333333443334333221 123457899999964
Q ss_pred Cc---cHHHHHHHHHHhCCcEEEEe
Q psy11993 587 DD---KVGAAISMTYITGQPIVFVG 608 (630)
Q Consensus 587 ~~---~~G~~ls~~~~~g~PI~fvg 608 (630)
+. ..-.+...+...+.|+..++
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~S 147 (168)
T 1u8z_A 123 DKRQVSVEEAKNRADQWNVNYVETS 147 (168)
T ss_dssp GGCCSCHHHHHHHHHHHTCEEEECC
T ss_pred ccCccCHHHHHHHHHHcCCeEEEeC
Confidence 21 23455566667788877665
No 214
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=97.51 E-value=0.00067 Score=63.69 Aligned_cols=93 Identities=14% Similarity=0.075 Sum_probs=49.3
Q ss_pred CCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcccCCc
Q psy11993 507 IDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTI 586 (630)
Q Consensus 507 ~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK~D~~ 586 (630)
+++.++||+|...... +..... ...+.+++|.+..... ....+..+...+..+... ......+|+||+|..
T Consensus 69 ~~~~l~Dt~G~~~~~~-~~~~~~-----~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~--~~~p~ilv~nK~Dl~ 139 (190)
T 3con_A 69 CLLDILDTAGQEEYSA-MRDQYM-----RTGEGFLCVFAINNSK-SFADINLYREQIKRVKDS--DDVPMVLVGNKCDLP 139 (190)
T ss_dssp EEEEEEECCC------------C-----TTCSEEEEEEETTCHH-HHHHHHHHHHHHHHHHTC--SCCCEEEEEECTTCS
T ss_pred EEEEEEECCChHHHHH-HHHHhh-----CcCCEEEEEEECcCHH-HHHHHHHHHHHHHHHhCC--CCCeEEEEEECCcCC
Confidence 4677999999653221 112211 3456777777765432 333344444444443321 113457899999964
Q ss_pred C--ccHHHHHHHHHHhCCcEEEEe
Q psy11993 587 D--DKVGAAISMTYITGQPIVFVG 608 (630)
Q Consensus 587 ~--~~~G~~ls~~~~~g~PI~fvg 608 (630)
. ...-.+..++...+.|+..++
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~S 163 (190)
T 3con_A 140 TRTVDTKQAHELAKSYGIPFIETS 163 (190)
T ss_dssp CCCSCHHHHHHHHHHHTCCEEECC
T ss_pred cccCCHHHHHHHHHHcCCeEEEEe
Confidence 2 133455667777888887765
No 215
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.51 E-value=3.4e-05 Score=83.89 Aligned_cols=35 Identities=26% Similarity=0.279 Sum_probs=31.8
Q ss_pred hhhhhhhhccCCCeE--EEEEccCCCChHHHHHHHHHHH
Q psy11993 399 LRDALEAKKQGRPFV--MAFCGVNGVGKSTNLAKICFWL 435 (630)
Q Consensus 399 L~~i~~~i~~g~p~v--i~lvGpNGvGKTTllakLA~~l 435 (630)
|+++++.+.+| .+ ++|||||||||||+++.|++..
T Consensus 30 L~~vsl~i~~G--ei~~vaLvG~nGaGKSTLln~L~G~~ 66 (427)
T 2qag_B 30 DQLVNKSVSQG--FCFNILCVGETGLGKSTLMDTLFNTK 66 (427)
T ss_dssp HHHHHHSCC-C--CEEEEEEECSTTSSSHHHHHHHHTSC
T ss_pred cCCCceEecCC--CeeEEEEECCCCCCHHHHHHHHhCcc
Confidence 88999999999 78 9999999999999999999873
No 216
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=97.51 E-value=0.0024 Score=66.32 Aligned_cols=52 Identities=13% Similarity=0.038 Sum_probs=42.4
Q ss_pred hhhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeeccc
Q psy11993 396 VDILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDT 449 (630)
Q Consensus 396 ~~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt 449 (630)
+..|+.+.--+.+| .++.|.|++|+||||++..+|.....++.+|++++...
T Consensus 55 ~~~LD~~lgGl~~G--~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~slE~ 106 (315)
T 3bh0_A 55 FTELDRMTYGYKRR--NFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLEM 106 (315)
T ss_dssp CHHHHHHHSSBCTT--CEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEESSS
T ss_pred hHHHHhhcCCCCCC--cEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEECCC
Confidence 45566665445677 89999999999999999999987776778999998774
No 217
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=97.49 E-value=0.00071 Score=63.91 Aligned_cols=92 Identities=12% Similarity=0.086 Sum_probs=53.8
Q ss_pred CCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcccCCc
Q psy11993 507 IDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTI 586 (630)
Q Consensus 507 ~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK~D~~ 586 (630)
+.+.++||+|...... +..... ...+.+++|.+.+.. +..+.+..+...+..+.. ......+|+||.|..
T Consensus 72 ~~~~i~Dt~G~~~~~~-~~~~~~-----~~~d~~i~v~d~~~~-~s~~~~~~~~~~i~~~~~---~~~piilv~nK~Dl~ 141 (191)
T 3dz8_A 72 VKLQIWDTAGQERYRT-ITTAYY-----RGAMGFILMYDITNE-ESFNAVQDWATQIKTYSW---DNAQVILVGNKCDME 141 (191)
T ss_dssp EEEEEECHHHHHHCHH-HHHHHH-----TTCCEEEEEEETTCH-HHHHTHHHHHHHHHHHSC---TTCEEEEEEECTTCG
T ss_pred EEEEEEeCCChHHHHH-HHHHHH-----ccCCEEEEEEECcCH-HHHHHHHHHHHHHHHhcC---CCCCEEEEEECCCCc
Confidence 4577999999654332 222222 356778888887643 334444555555544431 123457888999964
Q ss_pred Cc---cHHHHHHHHHHhCCcEEEEe
Q psy11993 587 DD---KVGAAISMTYITGQPIVFVG 608 (630)
Q Consensus 587 ~~---~~G~~ls~~~~~g~PI~fvg 608 (630)
.. ..-.+..++...+.|+..++
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~S 166 (191)
T 3dz8_A 142 EERVVPTEKGQLLAEQLGFDFFEAS 166 (191)
T ss_dssp GGCCSCHHHHHHHHHHHTCEEEECB
T ss_pred cccccCHHHHHHHHHHcCCeEEEEE
Confidence 21 22344556677788877665
No 218
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=97.49 E-value=0.00011 Score=84.43 Aligned_cols=142 Identities=18% Similarity=0.080 Sum_probs=75.2
Q ss_pred eEEEEEccCCCChHHHHHHHHHHHHh--cCCeEEEeecccCCccHHHHHHHHHhhhcccCCCcCCcchhhhHhhhccCCC
Q psy11993 412 FVMAFCGVNGVGKSTNLAKICFWLIE--NNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHPAAKHGGREMVQLFEKGYGK 489 (630)
Q Consensus 412 ~vi~lvGpNGvGKTTllakLA~~l~~--~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~~~~~tv~env~l~~~~~~~ 489 (630)
..++|+|++|+||||++..|++.... ..|+| ..+.+.......++ +. .+...... ..+.
T Consensus 10 ~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V-~~g~~~~d~~~~e~-~~---giti~~~~--------~~~~------ 70 (665)
T 2dy1_A 10 RTVALVGHAGSGKTTLTEALLYKTGAKERRGRV-EEGTTTTDYTPEAK-LH---RTTVRTGV--------APLL------ 70 (665)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG-GGTCCSSCCSHHHH-HT---TSCCSCEE--------EEEE------
T ss_pred cEEEEECCCCChHHHHHHHHHHhcCCCCcccee-cCCcccccCCHHHH-hc---CCeEEecc--------eEEe------
Confidence 89999999999999999999987653 34555 22222111111111 11 11110000 0000
Q ss_pred CHHHHHHHHHHHhhhcCCCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCccHHHHHHHHHHHHhhcccC
Q psy11993 490 DPAEIAFRAISHARDMHIDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQLVKFNNAMADHSLS 569 (630)
Q Consensus 490 d~~~ia~~ai~~a~~~~~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~Dav~ql~~f~~~l~~~~~~ 569 (630)
...+...++||+|.........+.+. ..|..++|.+++.|.+... ..+...+..+
T Consensus 71 --------------~~~~~~nliDTpG~~~f~~~~~~~l~------~ad~~ilVvD~~~g~~~qt--~~~~~~~~~~--- 125 (665)
T 2dy1_A 71 --------------FRGHRVFLLDAPGYGDFVGEIRGALE------AADAALVAVSAEAGVQVGT--ERAWTVAERL--- 125 (665)
T ss_dssp --------------ETTEEEEEEECCCSGGGHHHHHHHHH------HCSEEEEEEETTTCSCHHH--HHHHHHHHHT---
T ss_pred --------------eCCEEEEEEeCCCccchHHHHHHHHh------hcCcEEEEEcCCcccchhH--HHHHHHHHHc---
Confidence 01345668999997655444444443 2356777778988876433 2222223221
Q ss_pred CCCCCeeEEEEcccCCcCccHHHHH-HHHHHhC
Q psy11993 570 DNPHLIDGIVLTKFDTIDDKVGAAI-SMTYITG 601 (630)
Q Consensus 570 ~~~~~i~gIIlTK~D~~~~~~G~~l-s~~~~~g 601 (630)
.....+++||+|.. ...-.++ .+....+
T Consensus 126 ---~ip~ilv~NKiD~~-~~~~~~~~~l~~~l~ 154 (665)
T 2dy1_A 126 ---GLPRMVVVTKLDKG-GDYYALLEDLRSTLG 154 (665)
T ss_dssp ---TCCEEEEEECGGGC-CCHHHHHHHHHHHHC
T ss_pred ---cCCEEEEecCCchh-hhHHHHHHHHHHHhC
Confidence 12346789999975 3333333 3333445
No 219
>3qxc_A Dethiobiotin synthetase; DTBS, structural genomics, ATP BIND biology, protein structure initiative, midwest center for S genomics, MCSG; HET: ATP; 1.34A {Helicobacter pylori} PDB: 3mle_A* 3qxh_A* 3qxj_A* 3qxs_A* 3qxx_A* 3qy0_A* 2qmo_A
Probab=97.49 E-value=0.0054 Score=61.62 Aligned_cols=157 Identities=8% Similarity=0.057 Sum_probs=84.6
Q ss_pred eEEEEEcc-CCCChHHHHHHHHHHHHhcCCeEEEee-----cccC--CccHHHHH-HHHHhhh-cccC----CC-cCCcc
Q psy11993 412 FVMAFCGV-NGVGKSTNLAKICFWLIENNLNVLIAA-----CDTF--RAGAVEQL-RTHVRHL-CSLH----PA-AKHGG 476 (630)
Q Consensus 412 ~vi~lvGp-NGvGKTTllakLA~~l~~~ggkVlI~~-----~Dt~--R~ga~eQL-r~~~~~l-~~~~----~~-~~~tv 476 (630)
..+.|.|. +||||||....|+..+...+.+|.+.- +... +......+ +...... +... ++ .....
T Consensus 22 k~i~ItgT~t~vGKT~vs~gL~~~L~~~G~~V~~fKPv~~g~~~~~~~~~D~~~~~~~~~~~~~g~~~~~~~p~~~~~p~ 101 (242)
T 3qxc_A 22 HMLFISATNTNAGKTTCARLLAQYCNACGVKTILLKPIETGVNDAINHSSDAHLFLQDNRLLDRSLTLKDISFYRYHKVS 101 (242)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEECCEECSCCTTTCCCSHHHHHHHHHHTTCTTCCHHHHCCEECSSSS
T ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHhCCCceEEEeeeecCCcccCCCCchHHHHHHHHHHHhCCCChHHeeeEEECCCC
Confidence 68899998 799999999999999999999988763 3321 11112222 1111111 1110 00 00001
Q ss_pred hhhhHhhhccC--CCCHHHHHHHHHHHhhhcCCCeeeeccccchhc-------hHHHHHHHHhhhhhcCCCeEEEEeccc
Q psy11993 477 REMVQLFEKGY--GKDPAEIAFRAISHARDMHIDVVLIDTAGRMQD-------NEPLMRALAKLVKVNQPDLLLFVGEAL 547 (630)
Q Consensus 477 ~env~l~~~~~--~~d~~~ia~~ai~~a~~~~~D~vlIDTaGr~~~-------~~~L~~aL~kl~~~~~Pd~VLlV~E~~ 547 (630)
.+++.-...+. ..+... ..+.++.+. ..+|+++|+.+|+... ...+++.|. ..+|+|.++.
T Consensus 102 sp~~aa~~~g~~~~i~~~~-I~~~~~~l~-~~~D~vlIEGagGl~~pl~~~~~~adlA~~l~--------~pVILV~~~~ 171 (242)
T 3qxc_A 102 APLIAQQEEDPNAPIDTDN-LTQRLHNFT-KTYDLVIVEGAGGLCVPITLEENMLDFALKLK--------AKMLLISHDN 171 (242)
T ss_dssp CHHHHHHHHCTTCCCCHHH-HHHHHHHGG-GTCSEEEEECCSCTTCBSSSSCBHHHHHHHHT--------CEEEEEECCS
T ss_pred ChHHHHHHcCCCCcCCHHH-HHHHHHHHH-hcCCEEEEECCCCccccccccchHHHHHHHcC--------CCEEEEEcCC
Confidence 11111111111 223333 334444433 4689999999988642 233333333 2477788876
Q ss_pred cCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcccCCc
Q psy11993 548 VGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTI 586 (630)
Q Consensus 548 ~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK~D~~ 586 (630)
.| .++.+..-.+.+.+ .... .|+|+++++..
T Consensus 172 lg--~i~~~~lt~~~l~~-----~g~~-~GvIlN~v~~~ 202 (242)
T 3qxc_A 172 LG--LINDCLLNDFLLKS-----HQLD-YKIAINLKGNN 202 (242)
T ss_dssp TT--HHHHHHHHHHHHHT-----SSSC-EEEEECCCTTC
T ss_pred Cc--HHHHHHHHHHHHHh-----CCCC-EEEEEeCCCCc
Confidence 66 45544333333321 2345 89999999874
No 220
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=97.49 E-value=0.0009 Score=60.59 Aligned_cols=93 Identities=12% Similarity=0.077 Sum_probs=49.6
Q ss_pred CCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcccCCc
Q psy11993 507 IDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTI 586 (630)
Q Consensus 507 ~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK~D~~ 586 (630)
+.+.++||+|...... +..... ...+.+++|.+..... ..+.+..+...+..+... ....-.+|+||.|..
T Consensus 51 ~~~~l~D~~G~~~~~~-~~~~~~-----~~~~~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~--~~~piilv~nK~Dl~ 121 (167)
T 1kao_A 51 SVLEILDTAGTEQFAS-MRDLYI-----KNGQGFILVYSLVNQQ-SFQDIKPMRDQIIRVKRY--EKVPVILVGNKVDLE 121 (167)
T ss_dssp EEEEEEECCCTTCCHH-HHHHHH-----HHCSEEEEEEETTCHH-HHHHHHHHHHHHHHHTTT--SCCCEEEEEECGGGG
T ss_pred EEEEEEECCCchhhHH-HHHHHh-----ccCCEEEEEEeCCCHH-HHHHHHHHHHHHHHhcCC--CCCCEEEEEECCccc
Confidence 3467899999654332 222222 2346777777765432 233333333333322211 123457899999964
Q ss_pred Cc---cHHHHHHHHHHhCCcEEEEe
Q psy11993 587 DD---KVGAAISMTYITGQPIVFVG 608 (630)
Q Consensus 587 ~~---~~G~~ls~~~~~g~PI~fvg 608 (630)
+. ..-.+..++...+.|+..++
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~S 146 (167)
T 1kao_A 122 SEREVSSSEGRALAEEWGCPFMETS 146 (167)
T ss_dssp GGCCSCHHHHHHHHHHHTSCEEEEC
T ss_pred ccccCCHHHHHHHHHHhCCCEEEec
Confidence 21 12344556667788877765
No 221
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.48 E-value=6.7e-05 Score=71.29 Aligned_cols=39 Identities=23% Similarity=0.283 Sum_probs=35.1
Q ss_pred CeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeeccc
Q psy11993 411 PFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDT 449 (630)
Q Consensus 411 p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt 449 (630)
+.+|+|+|++||||||++..|+..+...+++|.+++.|.
T Consensus 13 ~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d~ 51 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGDW 51 (186)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHHH
Confidence 389999999999999999999999998899988877664
No 222
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=97.47 E-value=7.6e-05 Score=71.00 Aligned_cols=34 Identities=24% Similarity=0.254 Sum_probs=28.6
Q ss_pred eEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecc
Q psy11993 412 FVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACD 448 (630)
Q Consensus 412 ~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~D 448 (630)
++++|+|||||||||+++.|+. +.++.|.+.+-+
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~---~~~g~~~i~~d~ 36 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA---QLDNSAYIEGDI 36 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH---HSSSEEEEEHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc---ccCCeEEEcccc
Confidence 7899999999999999999986 556778776543
No 223
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.46 E-value=4.8e-05 Score=73.68 Aligned_cols=25 Identities=32% Similarity=0.280 Sum_probs=23.5
Q ss_pred eEEEEEccCCCChHHHHHHHHHHHH
Q psy11993 412 FVMAFCGVNGVGKSTNLAKICFWLI 436 (630)
Q Consensus 412 ~vi~lvGpNGvGKTTllakLA~~l~ 436 (630)
++++|+|||||||||+++.|++++.
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCc
Confidence 7899999999999999999999874
No 224
>4afi_A AP-3 complex subunit delta-1, vesicle-associated protein 7; endocytosis, exocytosis, clathrin adaptor, chimera, fusion P; 2.80A {Homo sapiens}
Probab=97.46 E-value=0.00077 Score=64.45 Aligned_cols=106 Identities=12% Similarity=0.273 Sum_probs=82.0
Q ss_pred eEEEeecCceEEEEeccCCCCCCchHHHHHHHhhhccccC----CCceeecCeEEEEEEeccccEEEEEEeccccchhcH
Q psy11993 4 FFTIFSKGGIVLWYFQSASQIFTPSLNALIKSVILQERGG----NQVFEHNGLVLKHKLDNEFDLVFVVGFQKILQLSYV 79 (630)
Q Consensus 4 ~~~i~t~gG~vLw~~~~~~~~~~~~in~li~~~~leer~~----~~~~~~~~~~l~w~~~n~~~lvfv~~yq~~l~l~y~ 79 (630)
..+.+.+|.+||..++..+. ....+.+.+| +|.. ..+|.+++|++.+...| |++|+++=.+-..-.-.
T Consensus 57 ~Ya~VArg~tiLAE~t~~~g----nf~~va~~iL--~kip~~~~r~t~~~~~y~fHyl~~d--gl~yl~i~D~~~~rr~a 128 (173)
T 4afi_A 57 LFAVVARGTTILAKHAWCGG----NFLEVTEQIL--AKIPSENNKLTYSHGNYLFHYICQD--RIVYLCITDDDFERSRA 128 (173)
T ss_dssp EEEEEEETTEEEEEEESSCC----CHHHHHHHHH--TTSCSSSEEEEEEETTEEEEEEEET--TEEEEEEEETTSCHHHH
T ss_pred EEEEEECCCEEEEEccCCCC----CHHHHHHHHH--HhCCCCCCeEEEEECCEEEEEEEEC--CEEEEEEECCccChhHH
Confidence 35678999999999876432 2346777766 3332 24799999999998865 78999998888887777
Q ss_pred HHHHHHHHHHHHHhhhhhhcCCCcceecCccHHHHHHHHHH
Q psy11993 80 DKLLDDVHLEFRDKYKNELGSDMHLYDYDFESTYNVLLKEA 120 (630)
Q Consensus 80 d~ll~~~~~~f~~~~~~~l~~~~~~~~~~f~~~f~~~l~~~ 120 (630)
=.||++|+.+|...|+.+.. ....|.|...|...|++.
T Consensus 129 F~FLedI~~eF~~~yg~~~~---ta~pya~~~eF~~~L~~~ 166 (173)
T 4afi_A 129 FSFLNEVKKRFQTTYGSRAQ---TALPYAMNSEFSSVLAAQ 166 (173)
T ss_dssp HHHHHHHHHHHHHHHGGGGG---TCCTTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhchhhh---hccCcchhHHHHHHHHHH
Confidence 88999999999999987542 224788999999999764
No 225
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.45 E-value=8.9e-05 Score=68.85 Aligned_cols=35 Identities=23% Similarity=0.179 Sum_probs=29.4
Q ss_pred eEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEee
Q psy11993 412 FVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAA 446 (630)
Q Consensus 412 ~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~ 446 (630)
+.++|+||||+||||++..|++.+.+.+.++..+.
T Consensus 37 ~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~ 71 (149)
T 2kjq_A 37 QFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYID 71 (149)
T ss_dssp SEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEc
Confidence 79999999999999999999999887655554444
No 226
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=97.45 E-value=0.0012 Score=62.09 Aligned_cols=94 Identities=13% Similarity=0.057 Sum_probs=50.4
Q ss_pred CCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcccCCc
Q psy11993 507 IDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTI 586 (630)
Q Consensus 507 ~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK~D~~ 586 (630)
+.+.++||+|...... +..... ...+.+++|.+.... +....+..+...+..+.... +...-.+|+||.|..
T Consensus 56 ~~~~l~Dt~G~~~~~~-~~~~~~-----~~~d~~i~v~d~~~~-~s~~~~~~~~~~i~~~~~~~-~~~piilv~nK~Dl~ 127 (199)
T 2gf0_A 56 CTLQITDTTGSHQFPA-MQRLSI-----SKGHAFILVFSVTSK-QSLEELGPIYKLIVQIKGSV-EDIPVMLVGNKCDET 127 (199)
T ss_dssp EEEEEEECCGGGSCHH-HHHHHH-----HHCSEEEEEEETTCH-HHHHTTHHHHHHHHHHHSCG-GGSCEEEEEECTTCS
T ss_pred EEEEEEeCCChHHhHH-HHHHhh-----ccCCEEEEEEECcCH-HHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECccCC
Confidence 4577999999665432 222222 235677777776543 23333333333333322110 112447899999975
Q ss_pred Ccc--HHHHHHHHHHhCCcEEEEe
Q psy11993 587 DDK--VGAAISMTYITGQPIVFVG 608 (630)
Q Consensus 587 ~~~--~G~~ls~~~~~g~PI~fvg 608 (630)
... .-.+..++...+.|+..++
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~S 151 (199)
T 2gf0_A 128 QREVDTREAQAVAQEWKCAFMETS 151 (199)
T ss_dssp SCSSCHHHHHHHHHHHTCEEEECB
T ss_pred ccccCHHHHHHHHHHhCCeEEEEe
Confidence 322 3344556667788777665
No 227
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=97.44 E-value=0.0002 Score=77.72 Aligned_cols=33 Identities=21% Similarity=0.046 Sum_probs=28.8
Q ss_pred hhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHH
Q psy11993 400 RDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFW 434 (630)
Q Consensus 400 ~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~ 434 (630)
+++++.++.+ ..++|||+|||||||+++.|++.
T Consensus 148 ~~i~lelk~g--~~VgLVG~~gAGKSTLL~~Lsg~ 180 (416)
T 1udx_A 148 RRLRLELMLI--ADVGLVGYPNAGKSSLLAAMTRA 180 (416)
T ss_dssp EEEEEEECCS--CSEEEECCGGGCHHHHHHHHCSS
T ss_pred eeeeeEEcCC--CEEEEECCCCCcHHHHHHHHHcC
Confidence 3577788888 89999999999999999999864
No 228
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=97.44 E-value=0.0012 Score=61.33 Aligned_cols=98 Identities=15% Similarity=0.093 Sum_probs=52.9
Q ss_pred CeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcccCCcC
Q psy11993 508 DVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTID 587 (630)
Q Consensus 508 D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK~D~~~ 587 (630)
.+.++||+|........ .... ...+.+++|.+.... +....+..+...+..+... ....-.+|+||.|...
T Consensus 53 ~~~i~Dt~G~~~~~~~~-~~~~-----~~~~~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~--~~~p~i~v~nK~Dl~~ 123 (189)
T 4dsu_A 53 LLDILDTAGQEEYSAMR-DQYM-----RTGEGFLCVFAINNT-KSFEDIHHYREQIKRVKDS--EDVPMVLVGNKCDLPS 123 (189)
T ss_dssp EEEEEECCCC---CTTH-HHHH-----HHCSEEEEEEETTCH-HHHHHHHHHHHHHHHHTTC--SCCCEEEEEECTTSSS
T ss_pred EEEEEECCCcHHHHHHH-HHHH-----hcCCEEEEEEECCCH-HHHHHHHHHHHHHHHhcCC--CCCcEEEEEECccCcc
Confidence 45689999965432222 2222 235677777776543 2333444444444433221 1234578889999642
Q ss_pred c--cHHHHHHHHHHhCCcEEEEe--cCCCCc
Q psy11993 588 D--KVGAAISMTYITGQPIVFVG--TGQTYT 614 (630)
Q Consensus 588 ~--~~G~~ls~~~~~g~PI~fvg--~Gq~v~ 614 (630)
. ....+..++...+.|+..++ +|+.+.
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~ 154 (189)
T 4dsu_A 124 RTVDTKQAQDLARSYGIPFIETSAKTRQGVD 154 (189)
T ss_dssp CSSCHHHHHHHHHHHTCCEEECCTTTCTTHH
T ss_pred cccCHHHHHHHHHHcCCeEEEEeCCCCCCHH
Confidence 2 33455667777888987766 444443
No 229
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=97.44 E-value=0.0012 Score=62.00 Aligned_cols=94 Identities=17% Similarity=0.166 Sum_probs=52.3
Q ss_pred CCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcccCCc
Q psy11993 507 IDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTI 586 (630)
Q Consensus 507 ~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK~D~~ 586 (630)
+.+.++||+|....+..+..... ...+.+++|.+.+.. +....+..+...+..+.. .....-.+|+||+|..
T Consensus 69 ~~~~l~Dt~G~~~~~~~~~~~~~-----~~~d~iilv~D~~~~-~s~~~~~~~~~~i~~~~~--~~~~piilv~nK~Dl~ 140 (189)
T 1z06_A 69 IKIQLWDTAGQERFRKSMVQHYY-----RNVHAVVFVYDMTNM-ASFHSLPAWIEECKQHLL--ANDIPRILVGNKCDLR 140 (189)
T ss_dssp EEEEEEECCCSHHHHTTTHHHHH-----TTCCEEEEEEETTCH-HHHHTHHHHHHHHHHHCC--CSCCCEEEEEECTTCG
T ss_pred EEEEEEECCCchhhhhhhhHHHh-----cCCCEEEEEEECcCH-HHHHHHHHHHHHHHHhcC--CCCCCEEEEEECcccc
Confidence 45779999996543212223322 456788888887643 223333334333433321 1123456889999974
Q ss_pred Cc---cHHHHHHHHHHhCCcEEEEe
Q psy11993 587 DD---KVGAAISMTYITGQPIVFVG 608 (630)
Q Consensus 587 ~~---~~G~~ls~~~~~g~PI~fvg 608 (630)
+. ..-.+..++...+.|+..++
T Consensus 141 ~~~~v~~~~~~~~~~~~~~~~~~~S 165 (189)
T 1z06_A 141 SAIQVPTDLAQKFADTHSMPLFETS 165 (189)
T ss_dssp GGCCSCHHHHHHHHHHTTCCEEECC
T ss_pred ccceeCHHHHHHHHHHcCCEEEEEe
Confidence 22 22344556666788877665
No 230
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=97.43 E-value=0.0013 Score=60.76 Aligned_cols=92 Identities=15% Similarity=0.185 Sum_probs=52.5
Q ss_pred CCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcccCCc
Q psy11993 507 IDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTI 586 (630)
Q Consensus 507 ~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK~D~~ 586 (630)
+.+.++||+|...... +..... ...+.+++|.+.+... ..+.+..+...+..+. .+...-.+|+||.|..
T Consensus 61 ~~~~i~Dt~G~~~~~~-~~~~~~-----~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~---~~~~p~i~v~nK~Dl~ 130 (181)
T 2efe_B 61 VKFEIWDTAGQERYHS-LAPMYY-----RGAAAAIIVFDVTNQA-SFERAKKWVQELQAQG---NPNMVMALAGNKSDLL 130 (181)
T ss_dssp EEEEEEECCCSGGGGG-GTHHHH-----TTCSEEEEEEETTCHH-HHHHHHHHHHHHHHHS---CTTCEEEEEEECTTCT
T ss_pred EEEEEEeCCCChhhhh-hhHHHh-----ccCCEEEEEEECCCHH-HHHHHHHHHHHHHHhc---CCCCcEEEEEECCccc
Confidence 4577999999654322 222222 3567888888875432 3333444444443332 1223457888999974
Q ss_pred Cc---cHHHHHHHHHHhCCcEEEEe
Q psy11993 587 DD---KVGAAISMTYITGQPIVFVG 608 (630)
Q Consensus 587 ~~---~~G~~ls~~~~~g~PI~fvg 608 (630)
+. ..-.+..++...+.|+..++
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~S 155 (181)
T 2efe_B 131 DARKVTAEDAQTYAQENGLFFMETS 155 (181)
T ss_dssp TTCCSCHHHHHHHHHHTTCEEEECC
T ss_pred ccccCCHHHHHHHHHHcCCEEEEEE
Confidence 22 23445566667788877665
No 231
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=97.42 E-value=0.00015 Score=69.42 Aligned_cols=98 Identities=11% Similarity=0.125 Sum_probs=55.8
Q ss_pred CCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcccCCc
Q psy11993 507 IDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTI 586 (630)
Q Consensus 507 ~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK~D~~ 586 (630)
+.+.++||+|....+. +... .....+.+++|.+++... ....+..+...+..+.. +...-.+|+||.|..
T Consensus 57 ~~~~l~Dt~G~~~~~~-~~~~-----~~~~~d~vilv~d~~~~~-s~~~~~~~~~~i~~~~~---~~~piilv~nK~Dl~ 126 (206)
T 2bcg_Y 57 VKLQIWDTAGQERFRT-ITSS-----YYRGSHGIIIVYDVTDQE-SFNGVKMWLQEIDRYAT---STVLKLLVGNKCDLK 126 (206)
T ss_dssp EEEEEECCTTTTTTTC-CCGG-----GGTTCSEEEEEEETTCHH-HHHHHHHHHHHHHHHSC---TTCEEEEEEECTTCT
T ss_pred EEEEEEeCCChHHHHH-HHHH-----hccCCCEEEEEEECcCHH-HHHHHHHHHHHHHHhcC---CCCCEEEEEECCCCc
Confidence 4577999999643211 1111 113567888888876543 33444444444443331 223457889999975
Q ss_pred Cc---cHHHHHHHHHHhCCcEEEEe--cCCCCc
Q psy11993 587 DD---KVGAAISMTYITGQPIVFVG--TGQTYT 614 (630)
Q Consensus 587 ~~---~~G~~ls~~~~~g~PI~fvg--~Gq~v~ 614 (630)
+. ..-.+..++...+.|+.+++ +|+.+.
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~ 159 (206)
T 2bcg_Y 127 DKRVVEYDVAKEFADANKMPFLETSALDSTNVE 159 (206)
T ss_dssp TTCCSCHHHHHHHHHHTTCCEEECCTTTCTTHH
T ss_pred cccccCHHHHHHHHHHcCCeEEEEeCCCCCCHH
Confidence 32 23345556667888887766 455444
No 232
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.42 E-value=0.00028 Score=68.13 Aligned_cols=25 Identities=16% Similarity=0.116 Sum_probs=21.5
Q ss_pred CCeEEEEEccCCCChHHHHHHHHHH
Q psy11993 410 RPFVMAFCGVNGVGKSTNLAKICFW 434 (630)
Q Consensus 410 ~p~vi~lvGpNGvGKTTllakLA~~ 434 (630)
++..|+|+|+.||||||++..|++.
T Consensus 11 ~~~~i~~~G~~g~GKTsl~~~l~~~ 35 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLTTD 35 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3468999999999999999998753
No 233
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=97.40 E-value=0.0016 Score=61.65 Aligned_cols=99 Identities=16% Similarity=0.054 Sum_probs=55.5
Q ss_pred CCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcccCCc
Q psy11993 507 IDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTI 586 (630)
Q Consensus 507 ~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK~D~~ 586 (630)
+.+.++||+|...... +..... ...+.+++|.+.+.. +....+..+...+..+... ....-.+|+||.|..
T Consensus 62 ~~~~l~Dt~G~~~~~~-~~~~~~-----~~~~~~i~v~d~~~~-~s~~~~~~~~~~i~~~~~~--~~~piilv~nK~Dl~ 132 (206)
T 2bov_A 62 VQIDILDTAGQEDYAA-IRDNYF-----RSGEGFLCVFSITEM-ESFAATADFREQILRVKED--ENVPFLLVGNKSDLE 132 (206)
T ss_dssp EEEEEEECCCTTCCHH-HHHHHH-----HHCSEEEEEEETTCH-HHHHHHHHHHHHHHHHTTC--SCCCEEEEEECTTCG
T ss_pred EEEEEEcCCChhhhHH-HHHHHH-----hhCCEEEEEEECCCH-HHHHHHHHHHHHHHHhcCC--CCCCEEEEEeccCcc
Confidence 4577999999654332 222222 245677777776543 2333344443444333211 123447899999975
Q ss_pred Cc---cHHHHHHHHHHhCCcEEEEe--cCCCCc
Q psy11993 587 DD---KVGAAISMTYITGQPIVFVG--TGQTYT 614 (630)
Q Consensus 587 ~~---~~G~~ls~~~~~g~PI~fvg--~Gq~v~ 614 (630)
+. ..-.+..++...+.|+..++ +|+.+.
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~ 165 (206)
T 2bov_A 133 DKRQVSVEEAKNRAEQWNVNYVETSAKTRANVD 165 (206)
T ss_dssp GGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHH
T ss_pred ccccccHHHHHHHHHHhCCeEEEEeCCCCCCHH
Confidence 31 23456667777888887766 455443
No 234
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=97.40 E-value=0.00022 Score=67.78 Aligned_cols=33 Identities=24% Similarity=0.214 Sum_probs=20.0
Q ss_pred hhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHH
Q psy11993 398 ILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICF 433 (630)
Q Consensus 398 iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~ 433 (630)
+++++++..+. ..|+|+|++||||||++..+++
T Consensus 13 ~l~~~~~~~~~---~ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 13 VLASLGLWNKH---GKLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp --------------CEEEEEESTTSSHHHHHHHHHH
T ss_pred HHHHhhccCCc---cEEEEECCCCCCHHHHHHHHhc
Confidence 44555555433 4789999999999999999875
No 235
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=97.39 E-value=0.0012 Score=62.53 Aligned_cols=92 Identities=16% Similarity=0.130 Sum_probs=53.6
Q ss_pred CCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcccCCc
Q psy11993 507 IDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTI 586 (630)
Q Consensus 507 ~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK~D~~ 586 (630)
+.+.++||+|....... ..... ...+.+++|.+.+.. +....+..+...+..+.. +...-.+|+||.|..
T Consensus 72 ~~~~i~Dt~G~~~~~~~-~~~~~-----~~~d~iilV~d~~~~-~s~~~~~~~~~~i~~~~~---~~~piiiv~NK~Dl~ 141 (192)
T 2fg5_A 72 HKFLIWDTAGQERFHSL-APMYY-----RGSAAAVIVYDITKQ-DSFYTLKKWVKELKEHGP---ENIVMAIAGNKCDLS 141 (192)
T ss_dssp EEEEEEEECCSGGGGGG-THHHH-----TTCSEEEEEEETTCT-HHHHHHHHHHHHHHHHSC---TTCEEEEEEECGGGG
T ss_pred EEEEEEcCCCchhhHhh-hHHhh-----ccCCEEEEEEeCCCH-HHHHHHHHHHHHHHHhCC---CCCcEEEEEECcccc
Confidence 45779999996543322 22222 356788888887654 334444444444444321 223557888999974
Q ss_pred Cc---cHHHHHHHHHHhCCcEEEEe
Q psy11993 587 DD---KVGAAISMTYITGQPIVFVG 608 (630)
Q Consensus 587 ~~---~~G~~ls~~~~~g~PI~fvg 608 (630)
+. ..-.+..++...+.|+..++
T Consensus 142 ~~~~v~~~~~~~~~~~~~~~~~~~S 166 (192)
T 2fg5_A 142 DIREVPLKDAKEYAESIGAIVVETS 166 (192)
T ss_dssp GGCCSCHHHHHHHHHTTTCEEEECB
T ss_pred cccccCHHHHHHHHHHcCCEEEEEe
Confidence 21 23455566666788877665
No 236
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=97.39 E-value=0.0017 Score=59.14 Aligned_cols=92 Identities=16% Similarity=0.111 Sum_probs=51.3
Q ss_pred CCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcccCCc
Q psy11993 507 IDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTI 586 (630)
Q Consensus 507 ~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK~D~~ 586 (630)
+.+.++||+|...... +..... ...+.+++|.+..... ....+..+...+..+. .+..+-.+|.||.|..
T Consensus 55 ~~~~~~Dt~G~~~~~~-~~~~~~-----~~~~~~i~v~d~~~~~-s~~~~~~~~~~l~~~~---~~~~~iilv~nK~Dl~ 124 (170)
T 1z0j_A 55 HKFLIWDTAGLERFRA-LAPMYY-----RGSAAAIIVYDITKEE-TFSTLKNWVRELRQHG---PPSIVVAIAGNKCDLT 124 (170)
T ss_dssp EEEEEEEECCSGGGGG-GTHHHH-----TTCSEEEEEEETTCHH-HHHHHHHHHHHHHHHS---CTTSEEEEEEECTTCG
T ss_pred EEEEEEcCCCchhhhc-ccHhhC-----cCCCEEEEEEECcCHH-HHHHHHHHHHHHHHhC---CCCCcEEEEEECCccc
Confidence 4577999999754322 222222 3557788888775432 3334444444444332 1233456778999975
Q ss_pred Cc---cHHHHHHHHHHhCCcEEEEe
Q psy11993 587 DD---KVGAAISMTYITGQPIVFVG 608 (630)
Q Consensus 587 ~~---~~G~~ls~~~~~g~PI~fvg 608 (630)
+. ..-.+..++...+.|+..++
T Consensus 125 ~~~~v~~~~~~~~~~~~~~~~~~~S 149 (170)
T 1z0j_A 125 DVREVMERDAKDYADSIHAIFVETS 149 (170)
T ss_dssp GGCCSCHHHHHHHHHHTTCEEEECB
T ss_pred cccccCHHHHHHHHHHcCCEEEEEe
Confidence 21 12344455666777777665
No 237
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=97.39 E-value=0.00025 Score=64.34 Aligned_cols=22 Identities=23% Similarity=0.324 Sum_probs=19.7
Q ss_pred eEEEEEccCCCChHHHHHHHHH
Q psy11993 412 FVMAFCGVNGVGKSTNLAKICF 433 (630)
Q Consensus 412 ~vi~lvGpNGvGKTTllakLA~ 433 (630)
..++|+|+.||||||++..|++
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~ 23 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLK 23 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 3689999999999999999884
No 238
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=97.38 E-value=0.00045 Score=63.26 Aligned_cols=94 Identities=10% Similarity=-0.047 Sum_probs=47.9
Q ss_pred CCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcccCCc
Q psy11993 507 IDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTI 586 (630)
Q Consensus 507 ~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK~D~~ 586 (630)
+.+.+.||+|.......+..... ...+.+++|.+.+.. +....+..+...+..+.. .....-.+|.||.|..
T Consensus 51 ~~~~i~D~~g~~~~~~~~~~~~~-----~~~d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~--~~~~p~ilv~nK~Dl~ 122 (169)
T 3q85_A 51 VTLIVYDIWEQGDAGGWLQDHCL-----QTGDAFLIVFSVTDR-RSFSKVPETLLRLRAGRP--HHDLPVILVGNKSDLA 122 (169)
T ss_dssp EEEEEECCCCC--------CHHH-----HHCSEEEEEEETTCH-HHHHTHHHHHHHHHHHST--TSCCCEEEEEECTTCG
T ss_pred EEEEEEECCCccccchhhhhhhh-----ccCCEEEEEEECCCh-HHHHHHHHHHHHHHhccc--CCCCCEEEEeeCcchh
Confidence 45668999997643322222222 235677777776543 333334333333333221 0123457889999964
Q ss_pred C---ccHHHHHHHHHHhCCcEEEEe
Q psy11993 587 D---DKVGAAISMTYITGQPIVFVG 608 (630)
Q Consensus 587 ~---~~~G~~ls~~~~~g~PI~fvg 608 (630)
+ ...-.+..++...+.|+..++
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~S 147 (169)
T 3q85_A 123 RSREVSLEEGRHLAGTLSCKHIETS 147 (169)
T ss_dssp GGCCSCHHHHHHHHHHTTCEEEECB
T ss_pred hcccCCHHHHHHHHHHcCCcEEEec
Confidence 1 123445556777788876655
No 239
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=97.38 E-value=7.8e-05 Score=75.45 Aligned_cols=38 Identities=32% Similarity=0.328 Sum_probs=35.4
Q ss_pred hhhhhhhhhhhcc---CCCeEEEEEccCCCChHHHHHHHHHHH
Q psy11993 396 VDILRDALEAKKQ---GRPFVMAFCGVNGVGKSTNLAKICFWL 435 (630)
Q Consensus 396 ~~iL~~i~~~i~~---g~p~vi~lvGpNGvGKTTllakLA~~l 435 (630)
..+|++++|.+.+ | .+|+|+|++||||||+++.|+..+
T Consensus 32 ~~~l~~~~~~i~~~l~g--~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 32 QQILKKKAEEVKPYLNG--RSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp CHHHHHHHHTTHHHHTT--CCEEEECSTTSCHHHHHHHHHHHH
T ss_pred chhhhhhhhhhhhhcCC--CEEEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999998 8 899999999999999999999977
No 240
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=97.38 E-value=0.00017 Score=68.75 Aligned_cols=39 Identities=18% Similarity=0.080 Sum_probs=35.7
Q ss_pred CeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeeccc
Q psy11993 411 PFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDT 449 (630)
Q Consensus 411 p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt 449 (630)
+.+++|+|++||||||++.+|+..+...+.+|.++..|.
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik~~~ 42 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHG 42 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEEeCC
Confidence 468999999999999999999999998888999998775
No 241
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=97.38 E-value=0.00016 Score=73.98 Aligned_cols=95 Identities=18% Similarity=0.214 Sum_probs=53.0
Q ss_pred CCCeeeeccccchhc-----hHHHHHHHHhhhhhcCCCeEEEEeccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEE
Q psy11993 506 HIDVVLIDTAGRMQD-----NEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVL 580 (630)
Q Consensus 506 ~~D~vlIDTaGr~~~-----~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIl 580 (630)
+..+.++||||.... .+.+.+... ....+|.+++|.|++.... ...+...+.+. .....+++
T Consensus 48 ~~~l~l~DtpG~~~~~~~~~~e~v~~~~~---~~~~~d~vi~V~D~t~~e~----~~~~~~~l~~~------~~p~ilv~ 114 (272)
T 3b1v_A 48 NKDLEIQDLPGIYSMSPYSPEAKVARDYL---LSQRADSILNVVDATNLER----NLYLTTQLIET------GIPVTIAL 114 (272)
T ss_dssp CTTEEEEECCCCSCSSCSSHHHHHHHHHH---HTTCCSEEEEEEEGGGHHH----HHHHHHHHHHT------CSCEEEEE
T ss_pred CCeEEEEECCCcCccCCCChHHHHHHHHH---hcCCCCEEEEEecCCchHh----HHHHHHHHHhc------CCCEEEEE
Confidence 356789999996542 223333332 1236899999988865321 11122222221 13457889
Q ss_pred cccCCcCccHH---HHHHHHHHhCCcEEEEe--cCCCCc
Q psy11993 581 TKFDTIDDKVG---AAISMTYITGQPIVFVG--TGQTYT 614 (630)
Q Consensus 581 TK~D~~~~~~G---~~ls~~~~~g~PI~fvg--~Gq~v~ 614 (630)
||+|.. ...+ .+-.+....|.|+..++ +|+.+.
T Consensus 115 NK~Dl~-~~~~~~~~~~~l~~~lg~~vi~~SA~~g~gi~ 152 (272)
T 3b1v_A 115 NMIDVL-DGQGKKINVDKLSYHLGVPVVATSALKQTGVD 152 (272)
T ss_dssp ECHHHH-HHTTCCCCHHHHHHHHTSCEEECBTTTTBSHH
T ss_pred EChhhC-CcCCcHHHHHHHHHHcCCCEEEEEccCCCCHH
Confidence 999974 2222 23345666789988776 445443
No 242
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.37 E-value=0.00058 Score=65.23 Aligned_cols=99 Identities=13% Similarity=0.108 Sum_probs=55.5
Q ss_pred CCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcccCCc
Q psy11993 507 IDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTI 586 (630)
Q Consensus 507 ~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK~D~~ 586 (630)
+.+.++||+|....+.. ..... ...+.+++|.+++... ....+..+...+..+.. ....-.+|+||+|..
T Consensus 69 ~~~~l~Dt~G~~~~~~~-~~~~~-----~~~d~ii~v~d~~~~~-s~~~~~~~~~~i~~~~~---~~~piilv~nK~Dl~ 138 (213)
T 3cph_A 69 VKLQLWDTAGQERFRTI-TTAYY-----RGAMGIILVYDVTDER-TFTNIKQWFKTVNEHAN---DEAQLLLVGNKSDME 138 (213)
T ss_dssp EEEEEECCTTGGGGTCC-CHHHH-----TTCSEEEEEEETTCHH-HHHTHHHHHHHHHHHTT---TCSEEEEEEECTTCS
T ss_pred EEEEEEeCCCcHHHHHH-HHHHh-----ccCCEEEEEEECCCHH-HHHHHHHHHHHHHHhcC---CCCCEEEEEECCCCc
Confidence 45779999996543221 11222 3567888888876432 23333344334433321 123457889999963
Q ss_pred Cc--cHHHHHHHHHHhCCcEEEEe--cCCCCcc
Q psy11993 587 DD--KVGAAISMTYITGQPIVFVG--TGQTYTD 615 (630)
Q Consensus 587 ~~--~~G~~ls~~~~~g~PI~fvg--~Gq~v~D 615 (630)
.. ..-.+..++...+.|+..+. +|+.+.+
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 171 (213)
T 3cph_A 139 TRVVTADQGEALAKELGIPFIESSAKNDDNVNE 171 (213)
T ss_dssp SCCSCHHHHHHHHHHHTCCEEECBTTTTBSSHH
T ss_pred ccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHH
Confidence 22 22344556667788887776 4555543
No 243
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=97.36 E-value=0.0018 Score=58.88 Aligned_cols=92 Identities=12% Similarity=0.121 Sum_probs=50.9
Q ss_pred CCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcccCCc
Q psy11993 507 IDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTI 586 (630)
Q Consensus 507 ~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK~D~~ 586 (630)
+.+.++||+|...... +..... ...+.+++|.+.+... ....+..+...+..+. .+..+-.+|.||.|..
T Consensus 55 ~~~~~~D~~G~~~~~~-~~~~~~-----~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~---~~~~~iilv~nK~Dl~ 124 (170)
T 1r2q_A 55 VKFEIWDTAGQERYHS-LAPMYY-----RGAQAAIVVYDITNEE-SFARAKNWVKELQRQA---SPNIVIALSGNKADLA 124 (170)
T ss_dssp EEEEEEEECCSGGGGG-GHHHHH-----TTCSEEEEEEETTCHH-HHHHHHHHHHHHHHHS---CTTCEEEEEEECGGGG
T ss_pred EEEEEEeCCCcHHhhh-hhHHhc-----cCCCEEEEEEECCCHH-HHHHHHHHHHHHHHhc---CCCCcEEEEEECccCc
Confidence 4577999999654322 222222 4567888888876442 3333444433333332 1223445667999964
Q ss_pred Cc---cHHHHHHHHHHhCCcEEEEe
Q psy11993 587 DD---KVGAAISMTYITGQPIVFVG 608 (630)
Q Consensus 587 ~~---~~G~~ls~~~~~g~PI~fvg 608 (630)
+. ..-.+..++...+.|+..++
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~S 149 (170)
T 1r2q_A 125 NKRAVDFQEAQSYADDNSLLFMETS 149 (170)
T ss_dssp GGCCSCHHHHHHHHHHTTCEEEECC
T ss_pred cccccCHHHHHHHHHHcCCeEEEEe
Confidence 21 23445566666777776655
No 244
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=97.35 E-value=0.00096 Score=62.55 Aligned_cols=93 Identities=11% Similarity=0.119 Sum_probs=52.0
Q ss_pred CCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcccCCc
Q psy11993 507 IDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTI 586 (630)
Q Consensus 507 ~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK~D~~ 586 (630)
+.+.++||+|....... ..... ...+.+++|.+.+.. +....+..+...+..+.. .....-.+|+||+|..
T Consensus 64 ~~~~i~Dt~G~~~~~~~-~~~~~-----~~~d~ii~v~d~~~~-~s~~~~~~~~~~i~~~~~--~~~~p~ilv~nK~Dl~ 134 (195)
T 1x3s_A 64 AKLAIWDTAGQERFRTL-TPSYY-----RGAQGVILVYDVTRR-DTFVKLDNWLNELETYCT--RNDIVNMLVGNKIDKE 134 (195)
T ss_dssp EEEEEEEECSSGGGCCS-HHHHH-----TTCCEEEEEEETTCH-HHHHTHHHHHHHHTTCCS--CSCCEEEEEEECTTSS
T ss_pred EEEEEEeCCCchhhhhh-hHHHh-----ccCCEEEEEEECcCH-HHHHHHHHHHHHHHHhcC--cCCCcEEEEEECCcCc
Confidence 45778999996543222 22222 356788888887644 233334444344433321 1123457899999974
Q ss_pred Ccc--HHHHHHHHHHhCCcEEEEe
Q psy11993 587 DDK--VGAAISMTYITGQPIVFVG 608 (630)
Q Consensus 587 ~~~--~G~~ls~~~~~g~PI~fvg 608 (630)
... .-.+..++...+.|+..+.
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~S 158 (195)
T 1x3s_A 135 NREVDRNEGLKFARKHSMLFIEAS 158 (195)
T ss_dssp SCCSCHHHHHHHHHHTTCEEEECC
T ss_pred ccccCHHHHHHHHHHcCCEEEEec
Confidence 322 2445566667777766554
No 245
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=97.35 E-value=0.015 Score=63.36 Aligned_cols=52 Identities=13% Similarity=0.038 Sum_probs=41.5
Q ss_pred hhhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeeccc
Q psy11993 396 VDILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDT 449 (630)
Q Consensus 396 ~~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt 449 (630)
+.-|+.+.--+.+| .++.|.|++|+||||++..||......+.+|++++...
T Consensus 184 ~~~LD~~lgGl~~G--~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSlEm 235 (444)
T 3bgw_A 184 FTELDRMTYGYKRR--NFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLEM 235 (444)
T ss_dssp CHHHHHHHSSBCSS--CEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred cHHHHhhcCCCCCC--cEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEECCC
Confidence 44455554334566 89999999999999999999987776688999998875
No 246
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.35 E-value=0.00037 Score=66.94 Aligned_cols=36 Identities=25% Similarity=0.184 Sum_probs=28.4
Q ss_pred CeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCC
Q psy11993 411 PFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFR 451 (630)
Q Consensus 411 p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R 451 (630)
+.+|+|+|++||||||++..|+..+ +- .+++.|.++
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l----g~-~~i~~d~~~ 53 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC----GY-PFIEGDALH 53 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH----TC-CEEEGGGGC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh----CC-EEEeCCcCc
Confidence 4689999999999999999999887 22 344566554
No 247
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=97.34 E-value=0.00045 Score=76.21 Aligned_cols=102 Identities=19% Similarity=0.179 Sum_probs=44.3
Q ss_pred CCCeeeeccccchhchHHHHHHH--H-hhhhhcCCCeEEEEeccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 506 HIDVVLIDTAGRMQDNEPLMRAL--A-KLVKVNQPDLLLFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 506 ~~D~vlIDTaGr~~~~~~L~~aL--~-kl~~~~~Pd~VLlV~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
++.+.++||+|.......+ ..+ . ........|.+++|.+++.+..... .......+..+. .....+|+||
T Consensus 280 g~~l~liDT~G~~~~~~~v-e~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~-~~~~~~~l~~l~-----~~piIvV~NK 352 (476)
T 3gee_A 280 KTMFRLTDTAGLREAGEEI-EHEGIRRSRMKMAEADLILYLLDLGTERLDDE-LTEIRELKAAHP-----AAKFLTVANK 352 (476)
T ss_dssp TEEEEEEC---------------------CCCSSCSEEEEEEETTTCSSGGG-HHHHHHHHHHCT-----TSEEEEEEEC
T ss_pred CeEEEEEECCCCCcchhHH-HHHHHHHHHhhcccCCEEEEEEECCCCcchhh-hHHHHHHHHhcC-----CCCEEEEEEC
Confidence 4568899999975432111 111 0 1112356889999999877654211 111112222221 1355788999
Q ss_pred cCCcCccHHHHHHHHHHhCCcEEEEe--cCCCCc
Q psy11993 583 FDTIDDKVGAAISMTYITGQPIVFVG--TGQTYT 614 (630)
Q Consensus 583 ~D~~~~~~G~~ls~~~~~g~PI~fvg--~Gq~v~ 614 (630)
+|......-..-.+......|+..++ +|+.+.
T Consensus 353 ~Dl~~~~~~~~~~l~~~~~~~~i~vSAktg~GI~ 386 (476)
T 3gee_A 353 LDRAANADALIRAIADGTGTEVIGISALNGDGID 386 (476)
T ss_dssp TTSCTTTHHHHHHHHHHHTSCEEECBTTTTBSHH
T ss_pred cCCCCccchhHHHHHhcCCCceEEEEECCCCCHH
Confidence 99863222211112222135776655 444443
No 248
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=97.34 E-value=7e-05 Score=70.70 Aligned_cols=37 Identities=30% Similarity=0.279 Sum_probs=29.5
Q ss_pred hhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCC
Q psy11993 401 DALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNL 440 (630)
Q Consensus 401 ~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~gg 440 (630)
++++.+.+| +.+|+||||+||||++..|++.+.+..+
T Consensus 19 ~~~~~~~~g---~~~i~G~NGsGKStll~ai~~~l~~~~~ 55 (182)
T 3kta_A 19 KVVIPFSKG---FTAIVGANGSGKSNIGDAILFVLGGLSA 55 (182)
T ss_dssp CEEEECCSS---EEEEEECTTSSHHHHHHHHHHHTTCCCT
T ss_pred cEEEecCCC---cEEEECCCCCCHHHHHHHHHHHHcCCcc
Confidence 445555554 9999999999999999999998865443
No 249
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=97.33 E-value=8e-05 Score=75.38 Aligned_cols=96 Identities=20% Similarity=0.318 Sum_probs=56.2
Q ss_pred CCCeeeeccccchhc-----hHHHHHHHHhhhhhcCCCeEEEEeccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEE
Q psy11993 506 HIDVVLIDTAGRMQD-----NEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVL 580 (630)
Q Consensus 506 ~~D~vlIDTaGr~~~-----~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIl 580 (630)
+..+.++||||.... .+.+.+.+. ....+|.+++|.+++...... . +...+..+ .....+++
T Consensus 51 ~~~~~l~DtpG~~~~~~~~~~e~v~~~~~---~~~~~d~ii~V~D~t~~~~~~---~-~~~~l~~~------~~pvilv~ 117 (258)
T 3a1s_A 51 GYTINLIDLPGTYSLGYSSIDEKIARDYL---LKGDADLVILVADSVNPEQSL---Y-LLLEILEM------EKKVILAM 117 (258)
T ss_dssp TEEEEEEECCCCSSCCSSSHHHHHHHHHH---HHSCCSEEEEEEETTSCHHHH---H-HHHHHHTT------TCCEEEEE
T ss_pred CeEEEEEECCCcCccCCCCHHHHHHHHHH---hhcCCCEEEEEeCCCchhhHH---H-HHHHHHhc------CCCEEEEE
Confidence 346789999997542 223333332 225789999999887643221 1 22222221 13457899
Q ss_pred cccCCcCccHH---HHHHHHHHhCCcEEEEe--cCCCCcc
Q psy11993 581 TKFDTIDDKVG---AAISMTYITGQPIVFVG--TGQTYTD 615 (630)
Q Consensus 581 TK~D~~~~~~G---~~ls~~~~~g~PI~fvg--~Gq~v~D 615 (630)
||+|.. ..-+ .+-.+....|.|+..++ +|+.+.+
T Consensus 118 NK~Dl~-~~~~i~~~~~~l~~~lg~~vi~~SA~~g~gi~e 156 (258)
T 3a1s_A 118 TAIDEA-KKTGMKIDRYELQKHLGIPVVFTSSVTGEGLEE 156 (258)
T ss_dssp ECHHHH-HHTTCCBCHHHHHHHHCSCEEECCTTTCTTHHH
T ss_pred ECcCCC-CccchHHHHHHHHHHcCCCEEEEEeeCCcCHHH
Confidence 999974 2211 23456677899998877 5666543
No 250
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=97.33 E-value=7.2e-05 Score=77.57 Aligned_cols=42 Identities=26% Similarity=0.325 Sum_probs=31.8
Q ss_pred cCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEE---eecccCCc
Q psy11993 408 QGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLI---AACDTFRA 452 (630)
Q Consensus 408 ~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI---~~~Dt~R~ 452 (630)
.| ++++|+|||||||||+++.|+ .+.+..|.|.+ .+.++.+.
T Consensus 164 ~G--~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~ 208 (302)
T 2yv5_A 164 EG--FICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTG 208 (302)
T ss_dssp TT--CEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCC
T ss_pred cC--cEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceee
Confidence 46 799999999999999999999 88888999998 67666543
No 251
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=97.32 E-value=0.008 Score=65.33 Aligned_cols=52 Identities=13% Similarity=0.068 Sum_probs=40.6
Q ss_pred hhhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHh-cCCeEEEeeccc
Q psy11993 396 VDILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIE-NNLNVLIAACDT 449 (630)
Q Consensus 396 ~~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~-~ggkVlI~~~Dt 449 (630)
+..|+.+.--+.+| .++.|+|++|+||||++..||..... .+.+|++++...
T Consensus 187 ~~~LD~~lgGl~~G--~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE~ 239 (444)
T 2q6t_A 187 FKELDQLIGTLGPG--SLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLEM 239 (444)
T ss_dssp CHHHHHHHCCCCTT--CEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESSS
T ss_pred CHhhhhhcCCcCCC--cEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 44455554335566 89999999999999999999987765 467899988764
No 252
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=97.32 E-value=0.001 Score=60.60 Aligned_cols=97 Identities=12% Similarity=0.092 Sum_probs=53.5
Q ss_pred CCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcccCCc
Q psy11993 507 IDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTI 586 (630)
Q Consensus 507 ~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK~D~~ 586 (630)
+.+.++||+|....... ..... ...+.+++|.+.+... ....+..+...+..+.. +...-.+|+||.|..
T Consensus 52 ~~~~l~D~~G~~~~~~~-~~~~~-----~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~---~~~piilv~nK~Dl~ 121 (170)
T 1g16_A 52 VKLQIWDTAGQERFRTI-TTAYY-----RGAMGIILVYDITDER-TFTNIKQWFKTVNEHAN---DEAQLLLVGNKSDME 121 (170)
T ss_dssp EEEEEECCTTGGGTSCC-CHHHH-----TTEEEEEEEEETTCHH-HHHTHHHHHHHHHHHSC---TTCEEEEEEECTTCT
T ss_pred EEEEEEeCCCChhhhhh-HHHHh-----ccCCEEEEEEECCCHH-HHHHHHHHHHHHHHhcC---CCCcEEEEEECccCC
Confidence 35678999996543221 11222 3556788888775432 33333444444433321 223457889999963
Q ss_pred Cc--cHHHHHHHHHHhCCcEEEEe--cCCCC
Q psy11993 587 DD--KVGAAISMTYITGQPIVFVG--TGQTY 613 (630)
Q Consensus 587 ~~--~~G~~ls~~~~~g~PI~fvg--~Gq~v 613 (630)
.. ..-.+..++...+.|+..++ +|+.+
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv 152 (170)
T 1g16_A 122 TRVVTADQGEALAKELGIPFIESSAKNDDNV 152 (170)
T ss_dssp TCCSCHHHHHHHHHHHTCCEEECBTTTTBSH
T ss_pred cCccCHHHHHHHHHHcCCeEEEEECCCCCCH
Confidence 21 22344556677788887766 44443
No 253
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.31 E-value=0.0014 Score=69.52 Aligned_cols=42 Identities=12% Similarity=0.117 Sum_probs=36.2
Q ss_pred hccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeeccc
Q psy11993 406 KKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDT 449 (630)
Q Consensus 406 i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt 449 (630)
++.| .++.|.|++|+||||++..++..+...+++|++++...
T Consensus 60 l~~G--~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~ 101 (356)
T 1u94_A 60 LPMG--RIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEH 101 (356)
T ss_dssp EETT--SEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred ccCC--eEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 3456 79999999999999999999998888888999888753
No 254
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=97.30 E-value=1.5e-05 Score=79.61 Aligned_cols=38 Identities=29% Similarity=0.336 Sum_probs=29.6
Q ss_pred eEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeeccc
Q psy11993 412 FVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDT 449 (630)
Q Consensus 412 ~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt 449 (630)
++++|+|||||||||++..|++.+.+..|.|.+.+.+.
T Consensus 28 ~~~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~~g~~~ 65 (227)
T 1qhl_A 28 LVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTTE 65 (227)
T ss_dssp HHHHHHSCCSHHHHHHHHHHHHHHSCCTTTC-------
T ss_pred cEEEEECCCCCCHHHHHHHHhcccccCCCeEEECCEEc
Confidence 48899999999999999999999999999999888775
No 255
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.30 E-value=9e-05 Score=71.00 Aligned_cols=30 Identities=27% Similarity=0.388 Sum_probs=25.9
Q ss_pred hccCCCeEEEEEccCCCChHHHHHHHHHHHHh
Q psy11993 406 KKQGRPFVMAFCGVNGVGKSTNLAKICFWLIE 437 (630)
Q Consensus 406 i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~ 437 (630)
+.+| .+++|+|||||||||+++.|++.+.+
T Consensus 3 i~~g--~~i~l~G~~GsGKSTl~~~L~~~~~~ 32 (207)
T 2j41_A 3 NEKG--LLIVLSGPSGVGKGTVRKRIFEDPST 32 (207)
T ss_dssp -CCC--CEEEEECSTTSCHHHHHHHHHHCTTC
T ss_pred CCCC--CEEEEECCCCCCHHHHHHHHHHhhCC
Confidence 3456 89999999999999999999998754
No 256
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=97.30 E-value=0.00017 Score=73.50 Aligned_cols=89 Identities=17% Similarity=0.171 Sum_probs=50.0
Q ss_pred CCCeeeeccccchhch---------HHHHHHHHhhhhhcCCCeEEEEeccccCccHHHHHHHHHHHHhhcccCCCCCCee
Q psy11993 506 HIDVVLIDTAGRMQDN---------EPLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLID 576 (630)
Q Consensus 506 ~~D~vlIDTaGr~~~~---------~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~ 576 (630)
+..+.++||||..... +.+.+.. .....+|.+++|.+++... ....+...+..+ ....
T Consensus 49 ~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~---~~~~~~d~ii~VvD~~~~~----~~~~~~~~l~~~------~~p~ 115 (274)
T 3i8s_A 49 DHQVTLVDLPGTYSLTTISSQTSLDEQIACHY---ILSGDADLLINVVDASNLE----RNLYLTLQLLEL------GIPC 115 (274)
T ss_dssp SCEEEEEECCCCSCSCC----CCHHHHHHHHH---HHHTCCSEEEEEEEGGGHH----HHHHHHHHHHHH------TCCE
T ss_pred CCceEEEECcCCCccccccccCCHHHHHHHHH---HhhcCCCEEEEEecCCChH----HHHHHHHHHHhc------CCCE
Confidence 3467799999965422 1222222 1225789999999887522 111122222222 1345
Q ss_pred EEEEcccCCcCccHH---HHHHHHHHhCCcEEEEe
Q psy11993 577 GIVLTKFDTIDDKVG---AAISMTYITGQPIVFVG 608 (630)
Q Consensus 577 gIIlTK~D~~~~~~G---~~ls~~~~~g~PI~fvg 608 (630)
.+++||+|.. ..-+ .+-.+....|.|+..++
T Consensus 116 ivv~NK~Dl~-~~~~~~~~~~~l~~~lg~~~i~~S 149 (274)
T 3i8s_A 116 IVALNMLDIA-EKQNIRIEIDALSARLGCPVIPLV 149 (274)
T ss_dssp EEEEECHHHH-HHTTEEECHHHHHHHHTSCEEECC
T ss_pred EEEEECccch-hhhhHHHHHHHHHHhcCCCEEEEE
Confidence 7889999964 2211 23345667789988876
No 257
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=97.30 E-value=0.00014 Score=69.75 Aligned_cols=33 Identities=27% Similarity=0.260 Sum_probs=25.9
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHH
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKIC 432 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA 432 (630)
.+++++++..+. ..|+|+|++||||||++..++
T Consensus 14 ~~l~~~~~~~~~---~ki~lvG~~~vGKSsLi~~l~ 46 (198)
T 1f6b_A 14 SVLQFLGLYKKT---GKLVFLGLDNAGKTTLLHMLK 46 (198)
T ss_dssp HHHHHHTCTTCC---EEEEEEEETTSSHHHHHHHHS
T ss_pred HHHHHhhccCCC---cEEEEECCCCCCHHHHHHHHh
Confidence 356666665443 468999999999999999886
No 258
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.29 E-value=0.00011 Score=69.75 Aligned_cols=33 Identities=12% Similarity=0.105 Sum_probs=26.5
Q ss_pred eEEEEEccCCCChHHHHHHHHHHHHh-cCCeEEE
Q psy11993 412 FVMAFCGVNGVGKSTNLAKICFWLIE-NNLNVLI 444 (630)
Q Consensus 412 ~vi~lvGpNGvGKTTllakLA~~l~~-~ggkVlI 444 (630)
++++|+|||||||||+++.|++.+.+ ..+.|..
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~~ 39 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPH 39 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCE
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCCccEEEeeec
Confidence 79999999999999999999998753 2344433
No 259
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=97.29 E-value=0.00064 Score=68.65 Aligned_cols=94 Identities=10% Similarity=0.038 Sum_probs=53.2
Q ss_pred CCeeeeccccchhchH---------HHHHHHHhhhhhcCCCeEEEEeccccCccHHHHHHHHHHHHhhcccCCCCCCeeE
Q psy11993 507 IDVVLIDTAGRMQDNE---------PLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDG 577 (630)
Q Consensus 507 ~D~vlIDTaGr~~~~~---------~L~~aL~kl~~~~~Pd~VLlV~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~g 577 (630)
..+.++||||...... .+.+... ....+|.+++|.+++.. .....+...+..+ .....
T Consensus 48 ~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~---~~~~~d~vi~VvDas~~----~~~~~l~~~l~~~------~~pvi 114 (256)
T 3iby_A 48 HLIEITDLPGVYSLVANAEGISQDEQIAAQSV---IDLEYDCIINVIDACHL----ERHLYLTSQLFEL------GKPVV 114 (256)
T ss_dssp EEEEEEECCCCSSCC------CHHHHHHHHHH---HHSCCSEEEEEEEGGGH----HHHHHHHHHHTTS------CSCEE
T ss_pred eEEEEEeCCCcccccccccCCCHHHHHHHHHH---hhCCCCEEEEEeeCCCc----hhHHHHHHHHHHc------CCCEE
Confidence 3577999999754332 2333222 22578999999988752 1111222223221 13457
Q ss_pred EEEcccCCcCccHH---HHHHHHHHhCCcEEEEe--cCCCCc
Q psy11993 578 IVLTKFDTIDDKVG---AAISMTYITGQPIVFVG--TGQTYT 614 (630)
Q Consensus 578 IIlTK~D~~~~~~G---~~ls~~~~~g~PI~fvg--~Gq~v~ 614 (630)
+++||+|... .-+ ..-.+....|.|+..++ +|+.+.
T Consensus 115 lv~NK~Dl~~-~~~~~~~~~~l~~~lg~~vi~~SA~~g~gi~ 155 (256)
T 3iby_A 115 VALNMMDIAE-HRGISIDTEKLESLLGCSVIPIQAHKNIGIP 155 (256)
T ss_dssp EEEECHHHHH-HTTCEECHHHHHHHHCSCEEECBGGGTBSHH
T ss_pred EEEEChhcCC-cCCcHHHHHHHHHHcCCCEEEEECCCCCCHH
Confidence 8999999652 221 12345667799998876 455443
No 260
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=97.29 E-value=0.0012 Score=62.21 Aligned_cols=98 Identities=16% Similarity=0.112 Sum_probs=54.9
Q ss_pred CCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcccCCc
Q psy11993 507 IDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTI 586 (630)
Q Consensus 507 ~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK~D~~ 586 (630)
+.+.++||+|....... ..... ...+.+++|.+.+... ..+.+..+...+..+.. +...-.+|+||+|..
T Consensus 70 ~~~~i~Dt~G~~~~~~~-~~~~~-----~~~d~ii~v~d~~~~~-s~~~~~~~l~~i~~~~~---~~~piilv~nK~Dl~ 139 (191)
T 2a5j_A 70 IKLQIWDTAGQESFRSI-TRSYY-----RGAAGALLVYDITRRE-TFNHLTSWLEDARQHSS---SNMVIMLIGNKSDLE 139 (191)
T ss_dssp EEEEEECCTTGGGTSCC-CHHHH-----TTCSEEEEEEETTCHH-HHHTHHHHHHHHHHHSC---TTCEEEEEEECTTCG
T ss_pred EEEEEEECCCchhhhhh-HHHHh-----ccCCEEEEEEECCCHH-HHHHHHHHHHHHHHhcC---CCCCEEEEEECcccC
Confidence 45678999996543221 11222 3567888888876432 33333444334433321 123456888999974
Q ss_pred Cc---cHHHHHHHHHHhCCcEEEEe--cCCCCc
Q psy11993 587 DD---KVGAAISMTYITGQPIVFVG--TGQTYT 614 (630)
Q Consensus 587 ~~---~~G~~ls~~~~~g~PI~fvg--~Gq~v~ 614 (630)
+. ..-.+..++...+.|+..++ +|+.+.
T Consensus 140 ~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 172 (191)
T 2a5j_A 140 SRRDVKREEGEAFAREHGLIFMETSAKTACNVE 172 (191)
T ss_dssp GGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHH
T ss_pred CccccCHHHHHHHHHHcCCEEEEEeCCCCCCHH
Confidence 21 23445566677788887776 444443
No 261
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=97.27 E-value=0.00084 Score=62.51 Aligned_cols=91 Identities=14% Similarity=0.098 Sum_probs=50.5
Q ss_pred eeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcccCCcC-
Q psy11993 509 VVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTID- 587 (630)
Q Consensus 509 ~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK~D~~~- 587 (630)
+.++||+|...........+ ...+.+++|.+..... ..+.+..+...+..+... ....-.+|+||.|..+
T Consensus 68 l~i~Dt~G~~~~~~~~~~~~------~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~ 138 (183)
T 3kkq_A 68 LDVLDTAGQEEFSAMREQYM------RTGDGFLIVYSVTDKA-SFEHVDRFHQLILRVKDR--ESFPMILVANKVDLMHL 138 (183)
T ss_dssp EEEEECCSCGGGCSSHHHHH------HHCSEEEEEEETTCHH-HHHTHHHHHHHHHHHHTS--SCCCEEEEEECTTCSTT
T ss_pred EEEEECCCchhhHHHHHHHH------hcCCEEEEEEECCCHH-HHHHHHHHHHHHHHhcCC--CCCcEEEEEECCCchhc
Confidence 45799999654332222222 2457788887775432 333333443333322211 1123468899999532
Q ss_pred --ccHHHHHHHHHHhCCcEEEEe
Q psy11993 588 --DKVGAAISMTYITGQPIVFVG 608 (630)
Q Consensus 588 --~~~G~~ls~~~~~g~PI~fvg 608 (630)
...-.+..++...+.|+..++
T Consensus 139 ~~v~~~~~~~~~~~~~~~~~~~S 161 (183)
T 3kkq_A 139 RKVTRDQGKEMATKYNIPYIETS 161 (183)
T ss_dssp CCSCHHHHHHHHHHHTCCEEEEB
T ss_pred cCcCHHHHHHHHHHhCCeEEEec
Confidence 233456677778889988776
No 262
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=97.27 E-value=0.0001 Score=72.95 Aligned_cols=37 Identities=22% Similarity=0.266 Sum_probs=32.4
Q ss_pred ccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeeccc
Q psy11993 407 KQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDT 449 (630)
Q Consensus 407 ~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt 449 (630)
.+| .+|+|+|+|||||||+++.|+++ +|.|.+.+.+.
T Consensus 18 ~~g--~~i~i~G~~GsGKSTl~~~L~~~----~g~v~~~~~~~ 54 (230)
T 2vp4_A 18 TQP--FTVLIEGNIGSGKTTYLNHFEKY----KNDICLLTEPV 54 (230)
T ss_dssp CCC--EEEEEECSTTSCHHHHHHTTGGG----TTTEEEECCTH
T ss_pred CCc--eEEEEECCCCCCHHHHHHHHHhc----cCCeEEEecCH
Confidence 455 89999999999999999999987 78899888764
No 263
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=97.27 E-value=0.0006 Score=70.59 Aligned_cols=75 Identities=16% Similarity=0.143 Sum_probs=42.9
Q ss_pred CCCeeeeccccchhchHHHHHHHHhhh--hhcCCCeEEEEeccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEccc
Q psy11993 506 HIDVVLIDTAGRMQDNEPLMRALAKLV--KVNQPDLLLFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKF 583 (630)
Q Consensus 506 ~~D~vlIDTaGr~~~~~~L~~aL~kl~--~~~~Pd~VLlV~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK~ 583 (630)
+..++++||||.......+-..+.... .....|.+++|.|++.+....+ ..+.+.+..+. +.....+|+||+
T Consensus 54 ~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~l~~ad~il~VvD~~~~~~~~~--~~i~~~l~~~~----~~~p~ilV~NK~ 127 (301)
T 1wf3_A 54 RRQIVFVDTPGLHKPMDALGEFMDQEVYEALADVNAVVWVVDLRHPPTPED--ELVARALKPLV----GKVPILLVGNKL 127 (301)
T ss_dssp TEEEEEEECCCCCCCCSHHHHHHHHHHHHHTSSCSEEEEEEETTSCCCHHH--HHHHHHHGGGT----TTSCEEEEEECG
T ss_pred CcEEEEecCccccchhhHHHHHHHHHHHHHHhcCCEEEEEEECCCCCChHH--HHHHHHHHhhc----CCCCEEEEEECc
Confidence 346789999997543222222222111 1246788999999987655433 22333343331 123567899999
Q ss_pred CCc
Q psy11993 584 DTI 586 (630)
Q Consensus 584 D~~ 586 (630)
|..
T Consensus 128 Dl~ 130 (301)
T 1wf3_A 128 DAA 130 (301)
T ss_dssp GGC
T ss_pred ccC
Confidence 975
No 264
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=97.27 E-value=0.0023 Score=59.83 Aligned_cols=101 Identities=16% Similarity=0.171 Sum_probs=52.3
Q ss_pred CCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCcc--HHHHHHHHHHHHhhcccCCCCCCeeEEEEcccC
Q psy11993 507 IDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNE--AVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFD 584 (630)
Q Consensus 507 ~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~D--av~ql~~f~~~l~~~~~~~~~~~i~gIIlTK~D 584 (630)
+.+.++||+|....+... .... .+.+.+++|.+.+.+.. ....+......+..+.. ..+...-.+|.||.|
T Consensus 74 ~~~~i~Dt~G~~~~~~~~-~~~~-----~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~-~~~~~piilv~NK~D 146 (198)
T 3t1o_A 74 TRFHLYTVPGQVFYNASR-KLIL-----RGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGL-TLDDVPIVIQVNKRD 146 (198)
T ss_dssp EEEEEEECCSCCSCSHHH-HHHT-----TTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTC-CTTSSCEEEEEECTT
T ss_pred eEEEEEeCCChHHHHHHH-HHHH-----hcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhcc-ccCCCCEEEEEEchh
Confidence 456789999966543322 2222 35678888888874321 11111222222332211 112334578889999
Q ss_pred CcCc-cHHHHHHHHHHhCC-cEEEEe--cCCCCc
Q psy11993 585 TIDD-KVGAAISMTYITGQ-PIVFVG--TGQTYT 614 (630)
Q Consensus 585 ~~~~-~~G~~ls~~~~~g~-PI~fvg--~Gq~v~ 614 (630)
..+. ..-.+...+...+. |+..++ +|+.+.
T Consensus 147 l~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~ 180 (198)
T 3t1o_A 147 LPDALPVEMVRAVVDPEGKFPVLEAVATEGKGVF 180 (198)
T ss_dssp STTCCCHHHHHHHHCTTCCSCEEECBGGGTBTHH
T ss_pred cccccCHHHHHHHHHhcCCceEEEEecCCCcCHH
Confidence 6422 23344455556677 776665 454443
No 265
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=97.27 E-value=0.0023 Score=59.54 Aligned_cols=93 Identities=19% Similarity=0.095 Sum_probs=53.3
Q ss_pred CCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcccCCc
Q psy11993 507 IDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTI 586 (630)
Q Consensus 507 ~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK~D~~ 586 (630)
+.+.++||+|...... +..... ...+.+++|.+++... ....+..+...+..+... ......+|+||+|..
T Consensus 70 ~~~~l~Dt~G~~~~~~-~~~~~~-----~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~--~~~piilv~nK~Dl~ 140 (195)
T 3bc1_A 70 IHLQLWDTAGLERFRS-LTTAFF-----RDAMGFLLLFDLTNEQ-SFLNVRNWISQLQMHAYS--ENPDIVLCGNKSDLE 140 (195)
T ss_dssp EEEEEEEECCSGGGHH-HHHHTT-----TTCSEEEEEEETTCHH-HHHTHHHHHHHHHHHSSS--SSCCEEEEEECTTCG
T ss_pred EEEEEEeCCCcHHHHH-HHHHHH-----cCCCEEEEEEECCCHH-HHHHHHHHHHHHHHhcCC--CCCCEEEEEECcccc
Confidence 4677999999754332 222221 3567888888876542 333333443344333210 123457889999975
Q ss_pred Cc---cHHHHHHHHHHhCCcEEEEe
Q psy11993 587 DD---KVGAAISMTYITGQPIVFVG 608 (630)
Q Consensus 587 ~~---~~G~~ls~~~~~g~PI~fvg 608 (630)
+. ..-.+..++...+.|+..++
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~S 165 (195)
T 3bc1_A 141 DQRAVKEEEARELAEKYGIPYFETS 165 (195)
T ss_dssp GGCCSCHHHHHHHHHHHTCCEEECC
T ss_pred cccccCHHHHHHHHHHcCCCEEEEE
Confidence 21 23445566677788887765
No 266
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=97.26 E-value=0.0017 Score=59.86 Aligned_cols=101 Identities=14% Similarity=0.154 Sum_probs=47.9
Q ss_pred CCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCccHHHHHHHHHHHHhhcccC-CCCCCeeEEEEcccCC
Q psy11993 507 IDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQLVKFNNAMADHSLS-DNPHLIDGIVLTKFDT 585 (630)
Q Consensus 507 ~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~Dav~ql~~f~~~l~~~~~~-~~~~~i~gIIlTK~D~ 585 (630)
+.+.++||+|...... +... . ....+.+++|.+.+... ....+..+...+..+... ........+|+||+|.
T Consensus 58 ~~~~l~Dt~G~~~~~~-~~~~---~--~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl 130 (182)
T 1ky3_A 58 ATMQVWDTAGQERFQS-LGVA---F--YRGADCCVLVYDVTNAS-SFENIKSWRDEFLVHANVNSPETFPFVILGNKIDA 130 (182)
T ss_dssp EEEEEECCC-----------C---C--STTCCEEEEEEETTCHH-HHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTS
T ss_pred EEEEEEECCCChHhhh-hhHH---H--hhcCCEEEEEEECCChH-HHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCcc
Confidence 4567899999543211 1111 1 13567788888776543 333344443333333211 0122345789999997
Q ss_pred cCc----cHHHHHHHHH-HhCCcEEEEe--cCCCCc
Q psy11993 586 IDD----KVGAAISMTY-ITGQPIVFVG--TGQTYT 614 (630)
Q Consensus 586 ~~~----~~G~~ls~~~-~~g~PI~fvg--~Gq~v~ 614 (630)
... ..-.+..++. ..+.|+..++ +|+.+.
T Consensus 131 ~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 166 (182)
T 1ky3_A 131 EESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVD 166 (182)
T ss_dssp CGGGCCSCHHHHHHHHHHTTSCCEEEEBTTTTBSHH
T ss_pred ccccccCCHHHHHHHHHhcCCCeEEEEecCCCCCHH
Confidence 321 1233444444 3467777665 444433
No 267
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.25 E-value=0.0024 Score=58.02 Aligned_cols=92 Identities=13% Similarity=0.118 Sum_probs=50.9
Q ss_pred CCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcccCCc
Q psy11993 507 IDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTI 586 (630)
Q Consensus 507 ~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK~D~~ 586 (630)
+.+.++||+|...... +..... ...+.+++|.+++.. +....+..+...+..+.. +...-.+|+||+|..
T Consensus 52 ~~~~~~D~~G~~~~~~-~~~~~~-----~~~d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~ 121 (170)
T 1ek0_A 52 VKFEIWDTAGQERFAS-LAPXYY-----RNAQAALVVYDVTKP-QSFIKARHWVKELHEQAS---KDIIIALVGNKIDXL 121 (170)
T ss_dssp EEEEEEEECCSGGGGG-GHHHHH-----TTCSEEEEEEETTCH-HHHHHHHHHHHHHHHHSC---TTCEEEEEEECGGGG
T ss_pred EEEEEEECCCChhhhh-hhhhhh-----ccCcEEEEEEecCCh-HHHHHHHHHHHHHHHhcC---CCCcEEEEEECCCcc
Confidence 3567899999654332 222222 356788888887654 233334444333433321 223456888999974
Q ss_pred Cc------cHHHHHHHHHHhCCcEEEEe
Q psy11993 587 DD------KVGAAISMTYITGQPIVFVG 608 (630)
Q Consensus 587 ~~------~~G~~ls~~~~~g~PI~fvg 608 (630)
.. ..-.+..++...+.|+..++
T Consensus 122 ~~~~~~~v~~~~~~~~~~~~~~~~~~~S 149 (170)
T 1ek0_A 122 QEGGERKVAREEGEKLAEEKGLLFFETS 149 (170)
T ss_dssp GSSCCCCSCHHHHHHHHHHHTCEEEECC
T ss_pred ccccccCCCHHHHHHHHHHcCCEEEEEe
Confidence 21 12334455666788776655
No 268
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=97.25 E-value=0.00062 Score=62.80 Aligned_cols=91 Identities=12% Similarity=0.102 Sum_probs=52.7
Q ss_pred CCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcccCCc
Q psy11993 507 IDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTI 586 (630)
Q Consensus 507 ~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK~D~~ 586 (630)
+.+.++||+|........ .. .....+.+++|.+.+.. +....+..+...+.... +.....+|+||.|..
T Consensus 58 ~~~~i~Dt~G~~~~~~~~-~~-----~~~~~d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~----~~~p~ilv~nK~Dl~ 126 (181)
T 3tw8_B 58 VKLQIWDTAGQERFRTIT-ST-----YYRGTHGVIVVYDVTSA-ESFVNVKRWLHEINQNC----DDVCRILVGNKNDDP 126 (181)
T ss_dssp EEEEEEEETTGGGCSSCC-GG-----GGTTCSEEEEEEETTCH-HHHHHHHHHHHHHHHHC----TTSEEEEEEECTTCG
T ss_pred EEEEEEcCCCchhhhhhH-HH-----HhccCCEEEEEEECCCH-HHHHHHHHHHHHHHHhC----CCCCEEEEEECCCCc
Confidence 456789999965422111 11 11356788888887654 33444444444443322 123457889999964
Q ss_pred Cc---cHHHHHHHHHHhCCcEEEEe
Q psy11993 587 DD---KVGAAISMTYITGQPIVFVG 608 (630)
Q Consensus 587 ~~---~~G~~ls~~~~~g~PI~fvg 608 (630)
.. ..-.+...+...+.|+..++
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~S 151 (181)
T 3tw8_B 127 ERKVVETEDAYKFAGQMGIQLFETS 151 (181)
T ss_dssp GGCCSCHHHHHHHHHHHTCCEEECB
T ss_pred hhcccCHHHHHHHHHHcCCeEEEEE
Confidence 22 23455667777888988776
No 269
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.25 E-value=0.00028 Score=72.55 Aligned_cols=62 Identities=24% Similarity=0.329 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHcCCCcchhhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCc
Q psy11993 376 NTVKSTLTDALVQILSPKRRVDILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRA 452 (630)
Q Consensus 376 ~~v~~~l~~~L~~il~~~~~~~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ 452 (630)
..+..++.+.+..++.... ...+|.+|+|+||+||||||+++.|+..+. +....+++|++|.
T Consensus 10 ~~~~~~~~~~~~~~l~~~~------------~~~~~~livl~G~sGsGKSTla~~L~~~~~---~~~~~Is~D~~R~ 71 (287)
T 1gvn_B 10 KQFENRLNDNLEELIQGKK------------AVESPTAFLLGGQPGSGKTSLRSAIFEETQ---GNVIVIDNDTFKQ 71 (287)
T ss_dssp HHHHHHHHHHHHHHHTTCC------------CCSSCEEEEEECCTTSCTHHHHHHHHHHTT---TCCEEECTHHHHT
T ss_pred HHHHHHHHHHHHHHhcccc------------CCCCCeEEEEECCCCCCHHHHHHHHHHHhC---CCeEEEechHhHH
Confidence 4555666666666665321 233468999999999999999999987652 2345567888764
No 270
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=97.25 E-value=0.0012 Score=60.65 Aligned_cols=101 Identities=9% Similarity=-0.016 Sum_probs=49.1
Q ss_pred CCeeeeccccchhch-HHHHHHHHhhhhhcCCCeEEEEeccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcccCC
Q psy11993 507 IDVVLIDTAGRMQDN-EPLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDT 585 (630)
Q Consensus 507 ~D~vlIDTaGr~~~~-~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK~D~ 585 (630)
+.+.++||+|..... ..+..... ...+.+++|.+.+.. +..+.+..+...+..+.. .+...-.+|+||.|.
T Consensus 52 ~~~~~~D~~g~~~~~~~~~~~~~~-----~~~~~~i~v~d~~~~-~s~~~~~~~~~~l~~~~~--~~~~piilv~NK~Dl 123 (175)
T 2nzj_A 52 TTLVVVDTWEAEKLDKSWSQESCL-----QGGSAYVIVYSIADR-GSFESASELRIQLRRTHQ--ADHVPIILVGNKADL 123 (175)
T ss_dssp EEEEEECCC-------CHHHHHTT-----TSCSEEEEEEETTCH-HHHHHHHHHHHHHHHCC------CCEEEEEECTTC
T ss_pred EEEEEEecCCCCccchhhhHHhhc-----ccCCEEEEEEECCCH-HHHHHHHHHHHHHHHhhc--cCCCCEEEEEEChhh
Confidence 456789999965421 11111111 345667777766532 334444444444443321 112345788999997
Q ss_pred cCc---cHHHHHHHHHHhCCcEEEEe--cCCCCcc
Q psy11993 586 IDD---KVGAAISMTYITGQPIVFVG--TGQTYTD 615 (630)
Q Consensus 586 ~~~---~~G~~ls~~~~~g~PI~fvg--~Gq~v~D 615 (630)
.+. ..-.+...+...+.|+..++ +|+.+.+
T Consensus 124 ~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~ 158 (175)
T 2nzj_A 124 ARCREVSVEEGRACAVVFDCKFIETSATLQHNVAE 158 (175)
T ss_dssp TTTCCSCHHHHHHHHHHHTSEEEECBTTTTBSHHH
T ss_pred ccccccCHHHHHHHHHHcCCeEEEEecCCCCCHHH
Confidence 532 12233445566788877765 4544443
No 271
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=97.24 E-value=0.0023 Score=58.03 Aligned_cols=93 Identities=12% Similarity=0.046 Sum_probs=48.1
Q ss_pred CCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcccCCc
Q psy11993 507 IDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTI 586 (630)
Q Consensus 507 ~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK~D~~ 586 (630)
+.+.++||+|...... +..... ...+.+++|.+.+.. +..+.+..+...+..+... ....-.+|+||.|..
T Consensus 51 ~~~~l~D~~G~~~~~~-~~~~~~-----~~~d~~i~v~d~~~~-~s~~~~~~~~~~i~~~~~~--~~~piilv~nK~Dl~ 121 (167)
T 1c1y_A 51 CMLEILDTAGTEQFTA-MRDLYM-----KNGQGFALVYSITAQ-STFNDLQDLREQILRVKDT--EDVPMILVGNKCDLE 121 (167)
T ss_dssp EEEEEEEECSSCSSTT-HHHHHH-----HHCSEEEEEEETTCH-HHHHTHHHHHHHHHHHHCC--SCCCEEEEEECTTCG
T ss_pred EEEEEEECCChHHHHH-HHHHHh-----ccCCEEEEEEECCCH-HHHHHHHHHHHHHHHhhCc--CCCcEEEEEECcccc
Confidence 4567899999654332 222222 235677777766543 2223333333333332211 123446889999975
Q ss_pred Ccc---HHHHHHHHHHh-CCcEEEEe
Q psy11993 587 DDK---VGAAISMTYIT-GQPIVFVG 608 (630)
Q Consensus 587 ~~~---~G~~ls~~~~~-g~PI~fvg 608 (630)
+.+ .-.+..++... +.|+..++
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~S 147 (167)
T 1c1y_A 122 DERVVGKEQGQNLARQWCNCAFLESS 147 (167)
T ss_dssp GGCCSCHHHHHHHHHHTTSCEEEECB
T ss_pred ccccCCHHHHHHHHHHccCCcEEEec
Confidence 321 23444555555 67776665
No 272
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=97.24 E-value=0.00045 Score=63.93 Aligned_cols=92 Identities=13% Similarity=0.172 Sum_probs=49.4
Q ss_pred CCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcccCCc
Q psy11993 507 IDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTI 586 (630)
Q Consensus 507 ~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK~D~~ 586 (630)
+.+.++||+|...... +.. .. ....+.+++|.+.+... ..+.+..+...+..+.. ....-.+|+||+|..
T Consensus 60 ~~~~~~Dt~G~~~~~~-~~~---~~--~~~~d~ii~v~d~~~~~-s~~~~~~~~~~i~~~~~---~~~piilv~nK~Dl~ 129 (180)
T 2g6b_A 60 VKLQMWDTAGQERFRS-VTH---AY--YRDAHALLLLYDVTNKA-SFDNIQAWLTEIHEYAQ---HDVALMLLGNKVDSA 129 (180)
T ss_dssp EEEEEEECCCC------------CC--GGGCSEEEEEEETTCHH-HHHTHHHHHHHHHHHSC---TTCEEEEEEECCSTT
T ss_pred EEEEEEeCCCcHHHHH-HHH---HH--ccCCCEEEEEEECCCHH-HHHHHHHHHHHHHHhCC---CCCcEEEEEECcccC
Confidence 4567899999643221 111 11 13457788888876542 23333334334433321 123457889999975
Q ss_pred Cc---cHHHHHHHHHHhCCcEEEEe
Q psy11993 587 DD---KVGAAISMTYITGQPIVFVG 608 (630)
Q Consensus 587 ~~---~~G~~ls~~~~~g~PI~fvg 608 (630)
.. ..-.+..++...+.|+..++
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~S 154 (180)
T 2g6b_A 130 HERVVKREDGEKLAKEYGLPFMETS 154 (180)
T ss_dssp SCCCSCHHHHHHHHHHHTCCEEECC
T ss_pred cccccCHHHHHHHHHHcCCeEEEEe
Confidence 32 23345566667788887765
No 273
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.23 E-value=0.00029 Score=65.98 Aligned_cols=34 Identities=21% Similarity=0.302 Sum_probs=27.8
Q ss_pred eEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeeccc
Q psy11993 412 FVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDT 449 (630)
Q Consensus 412 ~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt 449 (630)
.+++|+|++||||||+++.|+..+ |.+.+.+-+.
T Consensus 9 ~~i~l~G~~GsGKSTl~~~l~~~~----g~~~i~~d~~ 42 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVASEVAHQL----HAAFLDGDFL 42 (175)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHH----TCEEEEGGGG
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhh----CcEEEeCccc
Confidence 899999999999999999999876 5565544333
No 274
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=97.22 E-value=0.003 Score=58.02 Aligned_cols=92 Identities=15% Similarity=0.085 Sum_probs=50.8
Q ss_pred CCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcccCCc
Q psy11993 507 IDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTI 586 (630)
Q Consensus 507 ~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK~D~~ 586 (630)
+.+.++||+|...........+ ...+.+++|.+.+... ....+..+...+..+.. ....-.+|+||.|..
T Consensus 63 ~~~~~~Dt~G~~~~~~~~~~~~------~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~---~~~piilv~nK~Dl~ 132 (179)
T 2y8e_A 63 VRLQLWDTAGQERFRSLIPSYI------RDSTVAVVVYDITNTN-SFHQTSKWIDDVRTERG---SDVIIMLVGNKTDLS 132 (179)
T ss_dssp EEEEEEEECCSGGGGGGSHHHH------HTCSEEEEEEETTCHH-HHHTHHHHHHHHHHHHT---TSSEEEEEEECGGGG
T ss_pred EEEEEEECCCcHHHHHHHHHHh------cCCCEEEEEEECCCHH-HHHHHHHHHHHHHHhcC---CCCcEEEEEECCccc
Confidence 4567899999654322221222 3567888888875432 23333333333332221 123457899999964
Q ss_pred Cc---cHHHHHHHHHHhCCcEEEEe
Q psy11993 587 DD---KVGAAISMTYITGQPIVFVG 608 (630)
Q Consensus 587 ~~---~~G~~ls~~~~~g~PI~fvg 608 (630)
+. ..-.+...+...+.|+..++
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~S 157 (179)
T 2y8e_A 133 DKRQVSTEEGERKAKELNVMFIETS 157 (179)
T ss_dssp GGCCSCHHHHHHHHHHHTCEEEEEB
T ss_pred ccCcCCHHHHHHHHHHcCCeEEEEe
Confidence 21 12344556667788887766
No 275
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.22 E-value=0.0005 Score=71.58 Aligned_cols=36 Identities=19% Similarity=0.182 Sum_probs=25.4
Q ss_pred EEEEccCCCChHHHHHHHHH-HHHhcCCeEEEeeccc
Q psy11993 414 MAFCGVNGVGKSTNLAKICF-WLIENNLNVLIAACDT 449 (630)
Q Consensus 414 i~lvGpNGvGKTTllakLA~-~l~~~ggkVlI~~~Dt 449 (630)
++|+||||+||||++..|++ ++.+..+.+.+.+.+.
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~ 75 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQF 75 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHHSCTTCCC--------
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceee
Confidence 89999999999999999999 5567778887766554
No 276
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=97.22 E-value=0.0047 Score=65.12 Aligned_cols=49 Identities=10% Similarity=0.211 Sum_probs=40.2
Q ss_pred hhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeeccc
Q psy11993 399 LRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDT 449 (630)
Q Consensus 399 L~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt 449 (630)
|+.+.--+.+| .++.|.|++|+||||++..||..+...+++|++++...
T Consensus 36 LD~~~gGl~~G--~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSlEm 84 (338)
T 4a1f_A 36 LDNYTSGFNKG--SLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSLEM 84 (338)
T ss_dssp HHHHHCSBCTT--CEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred HHHHhcCCCCC--cEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCC
Confidence 33333334567 89999999999999999999988877889999998875
No 277
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.21 E-value=0.00014 Score=72.56 Aligned_cols=48 Identities=15% Similarity=0.082 Sum_probs=37.3
Q ss_pred hhhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeeccc
Q psy11993 396 VDILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDT 449 (630)
Q Consensus 396 ~~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt 449 (630)
..+++++++.++.| ++|+||||+||||+++.|++.+. .+.|.+.+.+.
T Consensus 38 ~~~~~~~~~~~~~g----~ll~G~~G~GKTtl~~~i~~~~~--~~~i~~~~~~~ 85 (254)
T 1ixz_A 38 PSRFHEMGARIPKG----VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDF 85 (254)
T ss_dssp HHHHHHTTCCCCSE----EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHH
T ss_pred HHHHHHcCCCCCCe----EEEECCCCCCHHHHHHHHHHHhC--CCEEEeeHHHH
Confidence 35778887776554 89999999999999999999874 56666665543
No 278
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=97.21 E-value=0.00025 Score=75.98 Aligned_cols=44 Identities=20% Similarity=0.060 Sum_probs=37.7
Q ss_pred hhhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEE
Q psy11993 396 VDILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLI 444 (630)
Q Consensus 396 ~~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI 444 (630)
..+|+++++.+++| ++++|+||||+||||+++.|++.+ +|++..
T Consensus 156 ~~~l~~~~~~i~~~--~~i~l~G~~GsGKSTl~~~l~~~~---~g~~~~ 199 (377)
T 1svm_A 156 YDFLKCMVYNIPKK--RYWLFKGPIDSGKTTLAAALLELC---GGKALN 199 (377)
T ss_dssp HHHHHHHHHCCTTC--CEEEEECSTTSSHHHHHHHHHHHH---CCEEEC
T ss_pred HHHHHhcccccCCC--CEEEEECCCCCCHHHHHHHHHhhc---CCcEEE
Confidence 35788899988888 899999999999999999999864 566655
No 279
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=97.20 E-value=0.0002 Score=73.99 Aligned_cols=45 Identities=29% Similarity=0.377 Sum_probs=35.4
Q ss_pred cCCCeEEEEEccCCCChHHHHHHHHHHHHhcC--C-eEEEeecccCCc
Q psy11993 408 QGRPFVMAFCGVNGVGKSTNLAKICFWLIENN--L-NVLIAACDTFRA 452 (630)
Q Consensus 408 ~g~p~vi~lvGpNGvGKTTllakLA~~l~~~g--g-kVlI~~~Dt~R~ 452 (630)
.++|.+|+|+|++||||||+++.|+..+.+.+ . .+.++..|.|-.
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f~~ 75 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFYL 75 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGGBC
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEeccccccC
Confidence 34568999999999999999999999997653 2 455558887543
No 280
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=97.20 E-value=0.00076 Score=65.01 Aligned_cols=99 Identities=11% Similarity=0.120 Sum_probs=54.4
Q ss_pred CCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcccCCc
Q psy11993 507 IDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTI 586 (630)
Q Consensus 507 ~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK~D~~ 586 (630)
+.+.++||+|..... .+... .....+.+++|.+.+... ....+..+...+..+.. ......+|.||+|..
T Consensus 75 ~~l~l~Dt~G~~~~~-~~~~~-----~~~~~d~~i~v~D~~~~~-s~~~~~~~~~~i~~~~~---~~~piilv~NK~Dl~ 144 (201)
T 2ew1_A 75 VKLQIWDTAGQERFR-SITQS-----YYRSANALILTYDITCEE-SFRCLPEWLREIEQYAS---NKVITVLVGNKIDLA 144 (201)
T ss_dssp EEEEEEEECCSGGGH-HHHGG-----GSTTCSEEEEEEETTCHH-HHHTHHHHHHHHHHHSC---TTCEEEEEEECGGGG
T ss_pred EEEEEEECCCcHHHH-HHHHH-----HHhcCCEEEEEEECCCHH-HHHHHHHHHHHHHHhcC---CCCCEEEEEECCCCc
Confidence 456789999965432 11111 113567888888876432 33334444444444331 123456788999974
Q ss_pred Cc---cHHHHHHHHHHhCCcEEEEe--cCCCCcc
Q psy11993 587 DD---KVGAAISMTYITGQPIVFVG--TGQTYTD 615 (630)
Q Consensus 587 ~~---~~G~~ls~~~~~g~PI~fvg--~Gq~v~D 615 (630)
+. ..-.+..++...+.|+..++ +|+.+.+
T Consensus 145 ~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~ 178 (201)
T 2ew1_A 145 ERREVSQQRAEEFSEAQDMYYLETSAKESDNVEK 178 (201)
T ss_dssp GGCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHH
T ss_pred cccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHH
Confidence 21 12334455666788877765 4555443
No 281
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.20 E-value=0.00011 Score=78.16 Aligned_cols=44 Identities=30% Similarity=0.237 Sum_probs=32.7
Q ss_pred hhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHH-hcCCeEEEe
Q psy11993 399 LRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLI-ENNLNVLIA 445 (630)
Q Consensus 399 L~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~-~~ggkVlI~ 445 (630)
++++++.. .| ++++|+||||||||||++.|++.+. +..|.|.+.
T Consensus 206 l~~L~~~~-~G--~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~ 250 (358)
T 2rcn_A 206 LKPLEEAL-TG--RISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNV 250 (358)
T ss_dssp HHHHHHHH-TT--SEEEEECCTTSSHHHHHHHHHCCSSCCCCC-----
T ss_pred HHHHHHhc-CC--CEEEEECCCCccHHHHHHHHhccccccccCCcccc
Confidence 44555543 46 7999999999999999999999988 888888775
No 282
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.20 E-value=0.0021 Score=68.56 Aligned_cols=41 Identities=15% Similarity=0.108 Sum_probs=36.2
Q ss_pred ccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeeccc
Q psy11993 407 KQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDT 449 (630)
Q Consensus 407 ~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt 449 (630)
+.| .++.|.|++|+||||++..++..+...+++|++++.+.
T Consensus 72 ~~G--~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~ 112 (366)
T 1xp8_A 72 PRG--RITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEH 112 (366)
T ss_dssp ETT--SEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred cCC--cEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCC
Confidence 456 79999999999999999999988877788999998875
No 283
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=97.19 E-value=0.00046 Score=68.51 Aligned_cols=34 Identities=24% Similarity=0.528 Sum_probs=30.5
Q ss_pred eEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEee
Q psy11993 412 FVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAA 446 (630)
Q Consensus 412 ~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~ 446 (630)
.+|+|.|++||||||++.+|+.++.. ++.|....
T Consensus 27 ~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~~~~ 60 (229)
T 4eaq_A 27 AFITFEGPEGSGKTTVINEVYHRLVK-DYDVIMTR 60 (229)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTT-TSCEEEEC
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhc-CCCceeec
Confidence 89999999999999999999999988 78886544
No 284
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.19 E-value=0.00027 Score=66.61 Aligned_cols=38 Identities=18% Similarity=0.281 Sum_probs=31.1
Q ss_pred eEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeeccc
Q psy11993 412 FVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDT 449 (630)
Q Consensus 412 ~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt 449 (630)
.+|+|+|++||||||+++.|+.++.+.+..+...+.|.
T Consensus 6 ~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~~ 43 (179)
T 2pez_A 6 CTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDN 43 (179)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECChH
Confidence 89999999999999999999999987665555444443
No 285
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.18 E-value=5.6e-05 Score=78.83 Aligned_cols=44 Identities=30% Similarity=0.197 Sum_probs=24.7
Q ss_pred hccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEE---eecccCC
Q psy11993 406 KKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLI---AACDTFR 451 (630)
Q Consensus 406 i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI---~~~Dt~R 451 (630)
+.+| ++++|+|||||||||+++.|++.+.+..|.|.+ .+.++.+
T Consensus 170 ~~~G--~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~ 216 (307)
T 1t9h_A 170 HFQD--KTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTR 216 (307)
T ss_dssp GGTT--SEEEEEESHHHHHHHHHHHHCC-------------------CC
T ss_pred hcCC--CEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCccccc
Confidence 4467 899999999999999999999999888888887 4544433
No 286
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=97.17 E-value=0.00072 Score=64.13 Aligned_cols=92 Identities=10% Similarity=0.059 Sum_probs=51.1
Q ss_pred CCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcccCCc
Q psy11993 507 IDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTI 586 (630)
Q Consensus 507 ~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK~D~~ 586 (630)
+.+.++||+|... ..+..... ...+.+++|.+.+.. +..+.+..+...+..+... ....-.+|+||.|..
T Consensus 76 ~~~~l~Dt~G~~~--~~~~~~~~-----~~~d~iilv~D~~~~-~s~~~~~~~~~~i~~~~~~--~~~piilv~NK~Dl~ 145 (196)
T 2atv_A 76 VSMEILDTAGQED--TIQREGHM-----RWGEGFVLVYDITDR-GSFEEVLPLKNILDEIKKP--KNVTLILVGNKADLD 145 (196)
T ss_dssp EEEEEEECCCCCC--CHHHHHHH-----HHCSEEEEEEETTCH-HHHHTHHHHHHHHHHHHTT--SCCCEEEEEECGGGG
T ss_pred EEEEEEECCCCCc--ccchhhhh-----ccCCEEEEEEECcCH-HHHHHHHHHHHHHHHhhCC--CCCcEEEEEECcccc
Confidence 4567899999765 22222222 234678888777543 2333344443344333211 123457889999975
Q ss_pred Cc---cHHHHHHHHHHhCCcEEEEe
Q psy11993 587 DD---KVGAAISMTYITGQPIVFVG 608 (630)
Q Consensus 587 ~~---~~G~~ls~~~~~g~PI~fvg 608 (630)
+. ..-.+..++...+.|+..++
T Consensus 146 ~~~~v~~~~~~~~~~~~~~~~~~~S 170 (196)
T 2atv_A 146 HSRQVSTEEGEKLATELACAFYECS 170 (196)
T ss_dssp GGCCSCHHHHHHHHHHHTSEEEECC
T ss_pred cccccCHHHHHHHHHHhCCeEEEEC
Confidence 31 12345566667788877665
No 287
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=97.17 E-value=0.00016 Score=73.39 Aligned_cols=48 Identities=15% Similarity=0.082 Sum_probs=37.0
Q ss_pred hhhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeeccc
Q psy11993 396 VDILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDT 449 (630)
Q Consensus 396 ~~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt 449 (630)
..+++++++.++.| ++|+||||+||||+++.|++.+. .+.|.+.+.|.
T Consensus 62 ~~~l~~~~~~~~~g----vll~Gp~GtGKTtl~~~i~~~~~--~~~i~~~~~~~ 109 (278)
T 1iy2_A 62 PSRFHEMGARIPKG----VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDF 109 (278)
T ss_dssp HHHHHHTTCCCCCE----EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHH
T ss_pred HHHHHHcCCCCCCe----EEEECCCcChHHHHHHHHHHHcC--CCEEEecHHHH
Confidence 35677777766544 89999999999999999999874 56676665543
No 288
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=97.17 E-value=0.00034 Score=78.16 Aligned_cols=86 Identities=20% Similarity=0.041 Sum_probs=49.7
Q ss_pred CCCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcccCC
Q psy11993 506 HIDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDT 585 (630)
Q Consensus 506 ~~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK~D~ 585 (630)
++.+.++||||.........+.+ ...|.+++|.++..|... +...+...+..+ .....+++||+|.
T Consensus 81 ~~~i~liDTPG~~df~~~~~~~l------~~aD~~IlVvDa~~g~~~--~t~~~~~~~~~~------~ipiivviNK~Dl 146 (529)
T 2h5e_A 81 DCLVNLLDTPGHEDFSEDTYRTL------TAVDCCLMVIDAAKGVED--RTRKLMEVTRLR------DTPILTFMNKLDR 146 (529)
T ss_dssp TEEEEEECCCCSTTCCHHHHHGG------GGCSEEEEEEETTTCSCH--HHHHHHHHHTTT------TCCEEEEEECTTS
T ss_pred CeEEEEEECCCChhHHHHHHHHH------HHCCEEEEEEeCCccchH--HHHHHHHHHHHc------CCCEEEEEcCcCC
Confidence 45678999999865444433333 356788999999887543 333333333211 1234788999998
Q ss_pred cCccHHH-HHHHHHHhCCcEE
Q psy11993 586 IDDKVGA-AISMTYITGQPIV 605 (630)
Q Consensus 586 ~~~~~G~-~ls~~~~~g~PI~ 605 (630)
.....-. +-.+....+.++.
T Consensus 147 ~~~~~~~~~~~i~~~l~~~~~ 167 (529)
T 2h5e_A 147 DIRDPMELLDEVENELKIGCA 167 (529)
T ss_dssp CCSCHHHHHHHHHHHHCCEEE
T ss_pred ccccHHHHHHHHHHHhCCCcc
Confidence 6433322 3334455565543
No 289
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=97.16 E-value=0.0011 Score=62.44 Aligned_cols=92 Identities=15% Similarity=0.094 Sum_probs=51.9
Q ss_pred CCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcccCCc
Q psy11993 507 IDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTI 586 (630)
Q Consensus 507 ~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK~D~~ 586 (630)
+.+.++||+|...... +..... ...+.+++|.+.+... ....+..+...+..+. .....-.+|+||+|..
T Consensus 74 ~~~~i~Dt~G~~~~~~-~~~~~~-----~~~d~vi~v~D~~~~~-s~~~~~~~l~~i~~~~---~~~~piilv~nK~Dl~ 143 (193)
T 2oil_A 74 VKAQIWDTAGLERYRA-ITSAYY-----RGAVGALLVFDLTKHQ-TYAVVERWLKELYDHA---EATIVVMLVGNKSDLS 143 (193)
T ss_dssp EEEEEEEESCCCTTCT-THHHHH-----TTCCEEEEEEETTCHH-HHHTHHHHHHHHHTTS---CTTCEEEEEEECGGGG
T ss_pred EEEEEEeCCCchhhhh-hhHHHh-----ccCCEEEEEEECCCHH-HHHHHHHHHHHHHHhc---CCCCeEEEEEECCCcc
Confidence 4567899999754332 222222 3567788888876432 3333334433343322 1223457889999975
Q ss_pred Cc---cHHHHHHHHHHhCCcEEEEe
Q psy11993 587 DD---KVGAAISMTYITGQPIVFVG 608 (630)
Q Consensus 587 ~~---~~G~~ls~~~~~g~PI~fvg 608 (630)
.. ..-.+..++...+.|+..++
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~S 168 (193)
T 2oil_A 144 QAREVPTEEARMFAENNGLLFLETS 168 (193)
T ss_dssp GGCCSCHHHHHHHHHHTTCEEEEEC
T ss_pred cccccCHHHHHHHHHHcCCEEEEEe
Confidence 21 23345556667788877765
No 290
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=97.16 E-value=0.00041 Score=66.73 Aligned_cols=22 Identities=18% Similarity=0.318 Sum_probs=20.2
Q ss_pred eEEEEEccCCCChHHHHHHHHH
Q psy11993 412 FVMAFCGVNGVGKSTNLAKICF 433 (630)
Q Consensus 412 ~vi~lvGpNGvGKTTllakLA~ 433 (630)
..|+|+|+.||||||++..|++
T Consensus 8 ~ki~vvG~~~~GKTsli~~l~~ 29 (214)
T 2fh5_B 8 RAVLFVGLCDSGKTLLFVRLLT 29 (214)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 5799999999999999999875
No 291
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=97.16 E-value=0.004 Score=60.93 Aligned_cols=42 Identities=19% Similarity=0.206 Sum_probs=34.5
Q ss_pred hccCCCeEEEEEccCCCChHHHHHHHHHH-HHhcCCeEEEeeccc
Q psy11993 406 KKQGRPFVMAFCGVNGVGKSTNLAKICFW-LIENNLNVLIAACDT 449 (630)
Q Consensus 406 i~~g~p~vi~lvGpNGvGKTTllakLA~~-l~~~ggkVlI~~~Dt 449 (630)
+++| .++.|.|++|+||||++..+|.. ....+..|++++...
T Consensus 27 l~~G--~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E~ 69 (251)
T 2zts_A 27 FPEG--TTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEE 69 (251)
T ss_dssp EETT--CEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSS
T ss_pred CCCC--eEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecccC
Confidence 3456 89999999999999999998864 455577899988775
No 292
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=97.15 E-value=0.0017 Score=65.62 Aligned_cols=23 Identities=30% Similarity=0.457 Sum_probs=20.6
Q ss_pred CeEEEEEccCCCChHHHHHHHHH
Q psy11993 411 PFVMAFCGVNGVGKSTNLAKICF 433 (630)
Q Consensus 411 p~vi~lvGpNGvGKTTllakLA~ 433 (630)
+..|+++|.+|+||||+++.|.+
T Consensus 39 ~~~I~vvG~~g~GKSSLin~l~~ 61 (270)
T 1h65_A 39 SLTILVMGKGGVGKSSTVNSIIG 61 (270)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHhC
Confidence 36799999999999999999874
No 293
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=97.15 E-value=0.002 Score=58.55 Aligned_cols=72 Identities=15% Similarity=0.130 Sum_probs=39.8
Q ss_pred CCCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcccCC
Q psy11993 506 HIDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDT 585 (630)
Q Consensus 506 ~~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK~D~ 585 (630)
++.+.++||+|....+. +..... .+.+.+++|.+.+...........+.+.+.... .+...-.+|+||.|.
T Consensus 43 ~~~~~i~Dt~G~~~~~~-~~~~~~-----~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~~piilv~nK~Dl 113 (164)
T 1r8s_A 43 NISFTVWDVGGQDKIRP-LWRHYF-----QNTQGLIFVVDSNDRERVNEAREELMRMLAEDE---LRDAVLLVFANKQDL 113 (164)
T ss_dssp SCEEEEEECCCCGGGHH-HHHHHT-----TTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGG---GTTCEEEEEEECTTS
T ss_pred CEEEEEEEcCCChhhHH-HHHHHh-----ccCCEEEEEEECCCHHHHHHHHHHHHHHHhchh---hcCCeEEEEEECcCC
Confidence 35677999999764332 222222 467788888887655332222223333332111 112355788999997
Q ss_pred c
Q psy11993 586 I 586 (630)
Q Consensus 586 ~ 586 (630)
.
T Consensus 114 ~ 114 (164)
T 1r8s_A 114 P 114 (164)
T ss_dssp T
T ss_pred c
Confidence 5
No 294
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=97.14 E-value=0.00042 Score=66.18 Aligned_cols=38 Identities=24% Similarity=0.252 Sum_probs=34.1
Q ss_pred eEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeeccc
Q psy11993 412 FVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDT 449 (630)
Q Consensus 412 ~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt 449 (630)
.+++|+|++||||||++..|+..+...+.+|.++..+.
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~ 44 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTH 44 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCC
Confidence 68999999999999999999999988888888887664
No 295
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=97.14 E-value=0.0038 Score=57.37 Aligned_cols=92 Identities=12% Similarity=0.001 Sum_probs=47.7
Q ss_pred CCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCccHHHHHHHHHHHH-hhcccCCCCCCeeEEEEcccCC
Q psy11993 507 IDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQLVKFNNAM-ADHSLSDNPHLIDGIVLTKFDT 585 (630)
Q Consensus 507 ~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~Dav~ql~~f~~~l-~~~~~~~~~~~i~gIIlTK~D~ 585 (630)
+.+.++||+|........ .... ...+.+++|.+.+.. +....+..+...+ ..... ....-.+|+||.|.
T Consensus 57 ~~~~~~Dt~G~~~~~~~~-~~~~-----~~~d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl 126 (181)
T 2fn4_A 57 ARLDILDTAGQEEFGAMR-EQYM-----RAGHGFLLVFAINDR-QSFNEVGKLFTQILRVKDR---DDFPVVLVGNKADL 126 (181)
T ss_dssp EEEEEEECCCTTTTSCCH-HHHH-----HHCSEEEEEEETTCH-HHHHHHHHHHHHHHHHHTS---SCCCEEEEEECGGG
T ss_pred EEEEEEECCCchhhHHHH-HHHH-----hhCCEEEEEEeCCCH-HHHHHHHHHHHHHHHhcCC---CCCCEEEEEECccc
Confidence 356689999965432211 2222 234677777776543 2333333332222 22211 12345789999996
Q ss_pred cCc-c--HHHHHHHHHHhCCcEEEEe
Q psy11993 586 IDD-K--VGAAISMTYITGQPIVFVG 608 (630)
Q Consensus 586 ~~~-~--~G~~ls~~~~~g~PI~fvg 608 (630)
.+. . .-.+.......+.|+..++
T Consensus 127 ~~~~~v~~~~~~~~~~~~~~~~~~~S 152 (181)
T 2fn4_A 127 ESQRQVPRSEASAFGASHHVAYFEAS 152 (181)
T ss_dssp GGGCCSCHHHHHHHHHHTTCEEEECB
T ss_pred ccccccCHHHHHHHHHHcCCeEEEec
Confidence 521 1 2334455566677777665
No 296
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=97.14 E-value=0.0019 Score=61.42 Aligned_cols=92 Identities=14% Similarity=0.061 Sum_probs=50.5
Q ss_pred CCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcccCCc
Q psy11993 507 IDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTI 586 (630)
Q Consensus 507 ~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK~D~~ 586 (630)
+.+.++||+|...........+ ...+.+++|.+.+... ....+..+.+.+..+.. ......+|+||+|..
T Consensus 77 ~~l~i~Dt~G~~~~~~~~~~~~------~~~d~iilv~d~~~~~-s~~~~~~~~~~i~~~~~---~~~piilv~NK~Dl~ 146 (199)
T 2p5s_A 77 TVLQLWDTAGQERFRSIAKSYF------RKADGVLLLYDVTCEK-SFLNIREWVDMIEDAAH---ETVPIMLVGNKADIR 146 (199)
T ss_dssp EEEEEEECTTCTTCHHHHHHHH------HHCSEEEEEEETTCHH-HHHTHHHHHHHHHHHC------CCEEEEEECGGGH
T ss_pred EEEEEEECCCCcchhhhHHHHH------hhCCEEEEEEECCChH-HHHHHHHHHHHHHHhcC---CCCCEEEEEECcccc
Confidence 3567899999765433222222 2457788888875442 33333444444443321 123457889999964
Q ss_pred C-------cc--HHHHHHHHHHhCCcEEEEe
Q psy11993 587 D-------DK--VGAAISMTYITGQPIVFVG 608 (630)
Q Consensus 587 ~-------~~--~G~~ls~~~~~g~PI~fvg 608 (630)
+ .. .-.+..++...+.|+..++
T Consensus 147 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~S 177 (199)
T 2p5s_A 147 DTAATEGQKCVPGHFGEKLAMTYGALFCETS 177 (199)
T ss_dssp HHHHHTTCCCCCHHHHHHHHHHHTCEEEECC
T ss_pred cccccccccccCHHHHHHHHHHcCCeEEEee
Confidence 1 11 2234455666788877665
No 297
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=97.13 E-value=0.0013 Score=66.25 Aligned_cols=23 Identities=26% Similarity=0.413 Sum_probs=20.8
Q ss_pred CeEEEEEccCCCChHHHHHHHHH
Q psy11993 411 PFVMAFCGVNGVGKSTNLAKICF 433 (630)
Q Consensus 411 p~vi~lvGpNGvGKTTllakLA~ 433 (630)
+..|+|+|.+||||||++..|.+
T Consensus 36 ~~~I~lvG~~g~GKSSLin~l~~ 58 (262)
T 3def_A 36 SMTVLVLGKGGVGKSSTVNSLIG 58 (262)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHT
T ss_pred CcEEEEECCCCCCHHHHHHHHhC
Confidence 46799999999999999999985
No 298
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.13 E-value=0.0041 Score=62.22 Aligned_cols=41 Identities=27% Similarity=0.341 Sum_probs=32.8
Q ss_pred CCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCcc
Q psy11993 410 RPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAG 453 (630)
Q Consensus 410 ~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~g 453 (630)
+|.+|+|+|++||||||++..|+..+. ..+.+++.|.+|..
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~~l~---~~~~~~~~D~~r~~ 71 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQKEFQ---GNIVIIDGDSFRSQ 71 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHHHTT---TCCEEECGGGGGTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcC---CCcEEEecHHHHHh
Confidence 458999999999999999999998763 34556677887653
No 299
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.12 E-value=7.1e-05 Score=78.45 Aligned_cols=39 Identities=21% Similarity=0.127 Sum_probs=30.1
Q ss_pred hhhhhhhhhhccC-----CCeEEEEEccCCCChHHHHHHHHHHH
Q psy11993 397 DILRDALEAKKQG-----RPFVMAFCGVNGVGKSTNLAKICFWL 435 (630)
Q Consensus 397 ~iL~~i~~~i~~g-----~p~vi~lvGpNGvGKTTllakLA~~l 435 (630)
.+++++++.+..| .+..++|+||||+||||+++.||+.+
T Consensus 32 ~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l 75 (334)
T 1in4_A 32 NVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASEL 75 (334)
T ss_dssp HHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 3455555555432 34789999999999999999999987
No 300
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=97.12 E-value=0.0014 Score=61.69 Aligned_cols=92 Identities=14% Similarity=0.056 Sum_probs=52.3
Q ss_pred CCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcccCCc
Q psy11993 507 IDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTI 586 (630)
Q Consensus 507 ~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK~D~~ 586 (630)
+.+.++||+|....... ... .....+.+++|.+.+... ..+.+..+...+..+.. ....-.+|+||.|..
T Consensus 71 ~~~~l~Dt~G~~~~~~~-~~~-----~~~~~d~ii~v~d~~~~~-s~~~~~~~~~~i~~~~~---~~~piilv~nK~Dl~ 140 (189)
T 2gf9_A 71 IKLQIWDTAGQERYRTI-TTA-----YYRGAMGFLLMYDIANQE-SFAAVQDWATQIKTYSW---DNAQVILVGNKCDLE 140 (189)
T ss_dssp EEEEEEECCSCCSSCCS-GGG-----GGTTCSEEEEEEETTCHH-HHHTHHHHHHHHHHHSC---TTCEEEEEEECTTCG
T ss_pred EEEEEEeCCCcHHHhhh-HHH-----hccCCCEEEEEEECCCHH-HHHHHHHHHHHHHHhcC---CCCCEEEEEECcccc
Confidence 45678999996542211 111 113567888888875432 33334444444444321 123457889999975
Q ss_pred Cc---cHHHHHHHHHHhCCcEEEEe
Q psy11993 587 DD---KVGAAISMTYITGQPIVFVG 608 (630)
Q Consensus 587 ~~---~~G~~ls~~~~~g~PI~fvg 608 (630)
+. ..-.+..++...+.|+..++
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~S 165 (189)
T 2gf9_A 141 DERVVPAEDGRRLADDLGFEFFEAS 165 (189)
T ss_dssp GGCCSCHHHHHHHHHHHTCEEEECB
T ss_pred cccCCCHHHHHHHHHHcCCeEEEEE
Confidence 32 13345566777788877765
No 301
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=97.11 E-value=0.0013 Score=60.08 Aligned_cols=92 Identities=15% Similarity=0.151 Sum_probs=49.3
Q ss_pred CCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcccCCc
Q psy11993 507 IDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTI 586 (630)
Q Consensus 507 ~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK~D~~ 586 (630)
+.+.++||+|..... .+... .....+.+++|.+.+.. +....+..+...+..+.. ....-.+|+||+|..
T Consensus 55 ~~l~i~Dt~G~~~~~-----~~~~~-~~~~~d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~ 124 (170)
T 1z08_A 55 VNLAIWDTAGQERFH-----ALGPI-YYRDSNGAILVYDITDE-DSFQKVKNWVKELRKMLG---NEICLCIVGNKIDLE 124 (170)
T ss_dssp EEEEEEECCCC------------CC-SSTTCSEEEEEEETTCH-HHHHHHHHHHHHHHHHHG---GGSEEEEEEECGGGG
T ss_pred EEEEEEECCCcHhhh-----hhHHH-HhccCCEEEEEEECcCH-HHHHHHHHHHHHHHHhcC---CCCeEEEEEECcccc
Confidence 356788999954321 11111 11356778888877543 233444444334433321 123456889999975
Q ss_pred Cc---cHHHHHHHHHHhCCcEEEEe
Q psy11993 587 DD---KVGAAISMTYITGQPIVFVG 608 (630)
Q Consensus 587 ~~---~~G~~ls~~~~~g~PI~fvg 608 (630)
+. ..-.+..++...+.|+..++
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~S 149 (170)
T 1z08_A 125 KERHVSIQEAESYAESVGAKHYHTS 149 (170)
T ss_dssp GGCCSCHHHHHHHHHHTTCEEEEEB
T ss_pred cccccCHHHHHHHHHHcCCeEEEec
Confidence 21 23455666777788877665
No 302
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.11 E-value=0.00019 Score=69.91 Aligned_cols=26 Identities=23% Similarity=0.268 Sum_probs=24.0
Q ss_pred eEEEEEccCCCChHHHHHHHHHHHHh
Q psy11993 412 FVMAFCGVNGVGKSTNLAKICFWLIE 437 (630)
Q Consensus 412 ~vi~lvGpNGvGKTTllakLA~~l~~ 437 (630)
.+++|+|||||||||++..|+..+.+
T Consensus 9 ~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 9 LLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred cEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 89999999999999999999988754
No 303
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.11 E-value=0.00025 Score=70.57 Aligned_cols=25 Identities=24% Similarity=0.240 Sum_probs=22.5
Q ss_pred CeEEEEEccCCCChHHHHHHHHHHH
Q psy11993 411 PFVMAFCGVNGVGKSTNLAKICFWL 435 (630)
Q Consensus 411 p~vi~lvGpNGvGKTTllakLA~~l 435 (630)
|.+++|+|||||||||+++.|+..+
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 5899999999999999999999443
No 304
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=97.11 E-value=0.00091 Score=64.57 Aligned_cols=23 Identities=35% Similarity=0.562 Sum_probs=20.2
Q ss_pred CeEEEEEccCCCChHHHHHHHHH
Q psy11993 411 PFVMAFCGVNGVGKSTNLAKICF 433 (630)
Q Consensus 411 p~vi~lvGpNGvGKTTllakLA~ 433 (630)
...|+|+|..||||||++..|.+
T Consensus 29 ~~~i~v~G~~~~GKSslin~l~~ 51 (223)
T 4dhe_A 29 QPEIAFAGRSNAGKSTAINVLCN 51 (223)
T ss_dssp SCEEEEEESCHHHHHHHHHHHTT
T ss_pred CCEEEEEcCCCCCHHHHHHHHhC
Confidence 35789999999999999998864
No 305
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=97.11 E-value=0.0032 Score=59.72 Aligned_cols=98 Identities=12% Similarity=0.071 Sum_probs=55.9
Q ss_pred CCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcccCCc
Q psy11993 507 IDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTI 586 (630)
Q Consensus 507 ~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK~D~~ 586 (630)
+.+.++||+|...... +..... ...+.+++|.+.+... ..+.+..+...+..+.. ....-.+|+||+|..
T Consensus 57 ~~~~l~Dt~G~~~~~~-~~~~~~-----~~~d~ii~v~d~~~~~-s~~~~~~~~~~i~~~~~---~~~piilv~nK~Dl~ 126 (203)
T 1zbd_A 57 IKLQIWDTAGLERYRT-ITTAYY-----RGAMGFILMYDITNEE-SFNAVQDWSTQIKTYSW---DNAQVLLVGNKCDME 126 (203)
T ss_dssp EEEEEEEECCSGGGHH-HHHTTG-----GGCSEEEEEEETTCHH-HHHHHHHHHHHHHHHSC---SSCEEEEEEECTTCT
T ss_pred EEEEEEECCCchhhcc-hHHHhh-----cCCCEEEEEEECcCHH-HHHHHHHHHHHHHHhcC---CCCCEEEEEECcccC
Confidence 4567899999754322 222111 3557788888876542 33444444444544321 123457889999975
Q ss_pred Cc---cHHHHHHHHHHhCCcEEEEe--cCCCCc
Q psy11993 587 DD---KVGAAISMTYITGQPIVFVG--TGQTYT 614 (630)
Q Consensus 587 ~~---~~G~~ls~~~~~g~PI~fvg--~Gq~v~ 614 (630)
.. ..-.+..++...+.|+..++ +|+.+.
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 159 (203)
T 1zbd_A 127 DERVVSSERGRQLADHLGFEFFEASAKDNINVK 159 (203)
T ss_dssp TSCCSCHHHHHHHHHHHTCEEEECBTTTTBSSH
T ss_pred cccccCHHHHHHHHHHCCCeEEEEECCCCCCHH
Confidence 32 23345566677788877765 444443
No 306
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=97.10 E-value=0.0045 Score=61.01 Aligned_cols=58 Identities=22% Similarity=0.208 Sum_probs=34.1
Q ss_pred ccCCCeEEEEEccCCCChHHHHHHHHHHH-HhcCC--eEEEeecccCCccHHHHHHHHHhhhc
Q psy11993 407 KQGRPFVMAFCGVNGVGKSTNLAKICFWL-IENNL--NVLIAACDTFRAGAVEQLRTHVRHLC 466 (630)
Q Consensus 407 ~~g~p~vi~lvGpNGvGKTTllakLA~~l-~~~gg--kVlI~~~Dt~R~ga~eQLr~~~~~l~ 466 (630)
..| +.++++|||||||||++..+.... ...+. .+.++-..+.|..+....+.....++
T Consensus 74 ~~g--~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~~~~ 134 (235)
T 3llm_A 74 SQN--SVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFERG 134 (235)
T ss_dssp HHC--SEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHHTTT
T ss_pred hcC--CEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHHHhc
Confidence 456 799999999999999888776432 22221 22222233446555544444444443
No 307
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=97.09 E-value=0.0026 Score=59.17 Aligned_cols=98 Identities=14% Similarity=0.081 Sum_probs=53.9
Q ss_pred CCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcccCCc
Q psy11993 507 IDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTI 586 (630)
Q Consensus 507 ~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK~D~~ 586 (630)
+.+.++||+|...... +.... ....+.+++|.+.+... ....+..+...+..+.. +...-.+|+||.|..
T Consensus 59 ~~~~l~Dt~G~~~~~~-~~~~~-----~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~ 128 (186)
T 2bme_A 59 VKLQIWDTAGQERFRS-VTRSY-----YRGAAGALLVYDITSRE-TYNALTNWLTDARMLAS---QNIVIILCGNKKDLD 128 (186)
T ss_dssp EEEEEEEECCSGGGHH-HHHTT-----STTCSEEEEEEETTCHH-HHHTHHHHHHHHHHHSC---TTCEEEEEEECGGGG
T ss_pred EEEEEEeCCCcHHHHH-HHHHH-----HhcCCEEEEEEECcCHH-HHHHHHHHHHHHHHhcC---CCCcEEEEEECcccc
Confidence 4567899999654322 21211 14567888888876532 33333344333433322 223557889999964
Q ss_pred Cc---cHHHHHHHHHHhCCcEEEEe--cCCCCc
Q psy11993 587 DD---KVGAAISMTYITGQPIVFVG--TGQTYT 614 (630)
Q Consensus 587 ~~---~~G~~ls~~~~~g~PI~fvg--~Gq~v~ 614 (630)
.. ..-.+..++...+.|+..++ +|+.+.
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 161 (186)
T 2bme_A 129 ADREVTFLEASRFAQENELMFLETSALTGENVE 161 (186)
T ss_dssp GGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHH
T ss_pred cccccCHHHHHHHHHHcCCEEEEecCCCCCCHH
Confidence 21 12344556666777776665 444443
No 308
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=97.09 E-value=0.0011 Score=72.04 Aligned_cols=24 Identities=33% Similarity=0.291 Sum_probs=21.6
Q ss_pred CeEEEEEccCCCChHHHHHHHHHH
Q psy11993 411 PFVMAFCGVNGVGKSTNLAKICFW 434 (630)
Q Consensus 411 p~vi~lvGpNGvGKTTllakLA~~ 434 (630)
+..++|+|++||||||+++.|++.
T Consensus 180 ~~kvaivG~~gvGKSTLln~l~g~ 203 (439)
T 1mky_A 180 AIKVAIVGRPNVGKSTLFNAILNK 203 (439)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTS
T ss_pred CceEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999864
No 309
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=97.08 E-value=0.00029 Score=79.11 Aligned_cols=42 Identities=33% Similarity=0.464 Sum_probs=35.8
Q ss_pred hccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCC-eEEEeeccc
Q psy11993 406 KKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNL-NVLIAACDT 449 (630)
Q Consensus 406 i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~gg-kVlI~~~Dt 449 (630)
+.+| .+++|+|+|||||||+++.|++.+.+.+| .|.+++.|.
T Consensus 366 ~~~G--~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~ 408 (552)
T 3cr8_A 366 ERQG--FTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDI 408 (552)
T ss_dssp GGSC--EEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHH
T ss_pred cccc--eEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcH
Confidence 3466 89999999999999999999999988875 787666664
No 310
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=97.07 E-value=0.00094 Score=61.10 Aligned_cols=72 Identities=13% Similarity=0.093 Sum_probs=39.5
Q ss_pred CCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcccCCc
Q psy11993 507 IDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTI 586 (630)
Q Consensus 507 ~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK~D~~ 586 (630)
+.+.++||+|....+.. ... .....+.+++|.+++...........+...+..... ....-.+|+||.|..
T Consensus 51 ~~~~~~Dt~G~~~~~~~-~~~-----~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~ 121 (171)
T 1upt_A 51 LKFQVWDLGGLTSIRPY-WRC-----YYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEEL---RKAILVVFANKQDME 121 (171)
T ss_dssp EEEEEEEECCCGGGGGG-GGG-----GCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGGG---TTCEEEEEEECTTST
T ss_pred EEEEEEECCCChhhhHH-HHH-----HhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhh---CCCEEEEEEECCCCc
Confidence 45679999997543211 111 113677888888887654332222333333322110 123557889999975
Q ss_pred C
Q psy11993 587 D 587 (630)
Q Consensus 587 ~ 587 (630)
+
T Consensus 122 ~ 122 (171)
T 1upt_A 122 Q 122 (171)
T ss_dssp T
T ss_pred C
Confidence 3
No 311
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=97.07 E-value=0.0021 Score=64.07 Aligned_cols=23 Identities=26% Similarity=0.323 Sum_probs=20.7
Q ss_pred CeEEEEEccCCCChHHHHHHHHH
Q psy11993 411 PFVMAFCGVNGVGKSTNLAKICF 433 (630)
Q Consensus 411 p~vi~lvGpNGvGKTTllakLA~ 433 (630)
+..|+|+|++||||||++..|.+
T Consensus 22 ~~~I~lvG~~g~GKStl~n~l~~ 44 (260)
T 2xtp_A 22 ELRIILVGKTGTGKSAAGNSILR 44 (260)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHhC
Confidence 46899999999999999999874
No 312
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=97.07 E-value=0.0015 Score=61.56 Aligned_cols=22 Identities=23% Similarity=0.326 Sum_probs=20.1
Q ss_pred eEEEEEccCCCChHHHHHHHHH
Q psy11993 412 FVMAFCGVNGVGKSTNLAKICF 433 (630)
Q Consensus 412 ~vi~lvGpNGvGKTTllakLA~ 433 (630)
..|+|+|+.||||||++..|++
T Consensus 23 ~ki~v~G~~~~GKSsli~~l~~ 44 (188)
T 1zd9_A 23 MELTLVGLQYSGKTTFVNVIAS 44 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHc
Confidence 6799999999999999999875
No 313
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=97.06 E-value=0.0014 Score=60.61 Aligned_cols=96 Identities=18% Similarity=0.195 Sum_probs=49.7
Q ss_pred CCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCccHHHHHH-HHHHHHhhcccCCCCCCeeEEEEcccCC
Q psy11993 507 IDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQLV-KFNNAMADHSLSDNPHLIDGIVLTKFDT 585 (630)
Q Consensus 507 ~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~Dav~ql~-~f~~~l~~~~~~~~~~~i~gIIlTK~D~ 585 (630)
+.+.++||+|....+. +... .....+.+++|.+.+... ..+.+. .+...+..+.. ...-.+|+||.|.
T Consensus 56 ~~~~i~Dt~G~~~~~~-~~~~-----~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~----~~piilv~nK~Dl 124 (182)
T 3bwd_D 56 VNLGLWDTAGQEDYNR-LRPL-----SYRGADVFILAFSLISKA-SYENVSKKWIPELKHYAP----GVPIVLVGTKLDL 124 (182)
T ss_dssp --CEEECCCC-CTTTT-TGGG-----GGTTCSEEEEEEETTCHH-HHHHHHHTHHHHHHHHCT----TCCEEEEEECHHH
T ss_pred EEEEEEECCCChhhhh-hHHh-----hccCCCEEEEEEECCCHH-HHHHHHHHHHHHHHHhCC----CCCEEEEEechhh
Confidence 4566899999654321 1111 113567888888875432 333333 34444544321 2345688999996
Q ss_pred cCcc-------------HHHHHHHHHHhCC-cEEEEe--cCCCC
Q psy11993 586 IDDK-------------VGAAISMTYITGQ-PIVFVG--TGQTY 613 (630)
Q Consensus 586 ~~~~-------------~G~~ls~~~~~g~-PI~fvg--~Gq~v 613 (630)
.... .-.+..++...+. |+..++ +|+.+
T Consensus 125 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 168 (182)
T 3bwd_D 125 RDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQENV 168 (182)
T ss_dssp HTCHHHHHHC--CCCCCHHHHHHHHHHHTCSEEEECCTTTCTTH
T ss_pred hcCcccccccccCCCCCHHHHHHHHHHcCCCEEEEEECCCCCCH
Confidence 4221 1234456666775 666554 34443
No 314
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=97.05 E-value=0.0019 Score=60.68 Aligned_cols=23 Identities=22% Similarity=0.391 Sum_probs=20.4
Q ss_pred CeEEEEEccCCCChHHHHHHHHH
Q psy11993 411 PFVMAFCGVNGVGKSTNLAKICF 433 (630)
Q Consensus 411 p~vi~lvGpNGvGKTTllakLA~ 433 (630)
...|+|+|++||||||++..|++
T Consensus 16 ~~ki~ivG~~~vGKSsL~~~l~~ 38 (181)
T 1fzq_A 16 EVRILLLGLDNAGKTTLLKQLAS 38 (181)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCC
T ss_pred ceEEEEECCCCCCHHHHHHHHhc
Confidence 36899999999999999998863
No 315
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=97.05 E-value=8.3e-05 Score=71.29 Aligned_cols=34 Identities=26% Similarity=0.362 Sum_probs=27.6
Q ss_pred hhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHH
Q psy11993 398 ILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWL 435 (630)
Q Consensus 398 iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l 435 (630)
+|++ |.+.+| ..++|+|+|||||||+++.|++..
T Consensus 17 ~l~~--~~~~~~--~~v~lvG~~g~GKSTLl~~l~g~~ 50 (210)
T 1pui_A 17 DIRH--LPSDTG--IEVAFAGRSNAGKSSALNTLTNQK 50 (210)
T ss_dssp SGGG--SSCSCS--EEEEEEECTTSSHHHHHTTTCCC-
T ss_pred CHhH--CCCCCC--cEEEEECCCCCCHHHHHHHHhCCC
Confidence 4555 556667 899999999999999999998654
No 316
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=97.04 E-value=0.00067 Score=71.66 Aligned_cols=104 Identities=13% Similarity=0.157 Sum_probs=56.5
Q ss_pred CCeeeeccccchh---chHHHHHHHHhhhhhcCCCeEEEEeccccC--ccHHHHHHHHHHHHhhcccCCCCCCeeEEEEc
Q psy11993 507 IDVVLIDTAGRMQ---DNEPLMRALAKLVKVNQPDLLLFVGEALVG--NEAVDQLVKFNNAMADHSLSDNPHLIDGIVLT 581 (630)
Q Consensus 507 ~D~vlIDTaGr~~---~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g--~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlT 581 (630)
..++++||+|... ....+...+.+.+ ...+.+|+|.|.+.. .+....+..+...+..|..... .....+|+|
T Consensus 206 ~~~~l~DtPG~i~~a~~~~~l~~~fl~~i--~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~-~~p~ilV~N 282 (342)
T 1lnz_A 206 RSFVMADLPGLIEGAHQGVGLGHQFLRHI--ERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLT-ERPQIIVAN 282 (342)
T ss_dssp CEEEEEEHHHHHHHTTCTTTTHHHHHHHH--HHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTT-TSCBCBEEE
T ss_pred ceEEEecCCCCcccccccchhHHHHHHHH--HhccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhc-CCCEEEEEE
Confidence 4578999999532 1212222222111 235678888887652 5677777777777776643211 123468999
Q ss_pred ccCCcCccHHHHHHHHHHhC--CcEEEEe--cCCCCc
Q psy11993 582 KFDTIDDKVGAAISMTYITG--QPIVFVG--TGQTYT 614 (630)
Q Consensus 582 K~D~~~~~~G~~ls~~~~~g--~PI~fvg--~Gq~v~ 614 (630)
|+|... .--.+-.+....+ .|+..++ +|+.+.
T Consensus 283 K~Dl~~-~~e~~~~l~~~l~~~~~v~~iSA~tg~gi~ 318 (342)
T 1lnz_A 283 KMDMPE-AAENLEAFKEKLTDDYPVFPISAVTREGLR 318 (342)
T ss_dssp CTTSTT-HHHHHHHHHHHCCSCCCBCCCSSCCSSTTH
T ss_pred CccCCC-CHHHHHHHHHHhhcCCCEEEEECCCCcCHH
Confidence 999863 2222333444444 4554443 344443
No 317
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=97.02 E-value=0.0099 Score=58.42 Aligned_cols=50 Identities=18% Similarity=0.240 Sum_probs=36.5
Q ss_pred eEEEEEccCCCChHHHHHHHHHHHHhcCC-eEEEeecccCCccHHHHHHHHH
Q psy11993 412 FVMAFCGVNGVGKSTNLAKICFWLIENNL-NVLIAACDTFRAGAVEQLRTHV 462 (630)
Q Consensus 412 ~vi~lvGpNGvGKTTllakLA~~l~~~gg-kVlI~~~Dt~R~ga~eQLr~~~ 462 (630)
.+|+|.|+.||||||.+..|+.++...+. .|.+. ..+......+++|.+.
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~~v~~~-rep~~t~~g~~ir~~l 54 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETLEQLGIRDMVFT-REPGGTQLAEKLRSLL 54 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEE-ESSCSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCCcceee-eCCCCCHHHHHHHHHH
Confidence 79999999999999999999999988876 66443 3332322335566543
No 318
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=97.02 E-value=0.0014 Score=62.49 Aligned_cols=94 Identities=11% Similarity=0.009 Sum_probs=50.2
Q ss_pred CCCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcccCC
Q psy11993 506 HIDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDT 585 (630)
Q Consensus 506 ~~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK~D~ 585 (630)
.+.+.++||+|....... ... .....+.+++|.+.+.. +..+.+..+...+..+.. .......+|+||.|.
T Consensus 71 ~~~~~l~Dt~G~~~~~~~-~~~-----~~~~~d~~i~v~d~~~~-~s~~~~~~~~~~i~~~~~--~~~~piilv~nK~Dl 141 (201)
T 3oes_A 71 EFHLHLVDTAGQDEYSIL-PYS-----FIIGVHGYVLVYSVTSL-HSFQVIESLYQKLHEGHG--KTRVPVVLVGNKADL 141 (201)
T ss_dssp CEEEEEEEECCCCTTCCC-CGG-----GTTTCCEEEEEEETTCH-HHHHHHHHHHHHHHC-------CCCEEEEEECTTC
T ss_pred EEEEEEEECCCccchHHH-HHH-----HHhcCCEEEEEEeCCCH-HHHHHHHHHHHHHHHhcC--CCCCCEEEEEECccC
Confidence 355679999995432211 011 11356778888877643 334444444444433321 112245788899996
Q ss_pred cCc---cHHHHHHHHHHhCCcEEEEe
Q psy11993 586 IDD---KVGAAISMTYITGQPIVFVG 608 (630)
Q Consensus 586 ~~~---~~G~~ls~~~~~g~PI~fvg 608 (630)
... ..-.+..++...+.|+..++
T Consensus 142 ~~~~~v~~~~~~~~~~~~~~~~~~~S 167 (201)
T 3oes_A 142 SPEREVQAVEGKKLAESWGATFMESS 167 (201)
T ss_dssp GGGCCSCHHHHHHHHHHHTCEEEECC
T ss_pred ccccccCHHHHHHHHHHhCCeEEEEe
Confidence 421 22344566677788876664
No 319
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=97.02 E-value=0.0036 Score=59.78 Aligned_cols=98 Identities=8% Similarity=0.051 Sum_probs=55.9
Q ss_pred CCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcccCCc
Q psy11993 507 IDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTI 586 (630)
Q Consensus 507 ~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK~D~~ 586 (630)
+.+.++||+|....+. +..... ...+.+++|.+.+.. +..+.+..+...+..+.. ....-.+|.||.|..
T Consensus 78 ~~l~i~Dt~G~~~~~~-~~~~~~-----~~~d~iilv~D~~~~-~s~~~~~~~~~~i~~~~~---~~~piilv~NK~Dl~ 147 (201)
T 2hup_A 78 VKLQIWDTAGQERFRT-ITQSYY-----RSANGAILAYDITKR-SSFLSVPHWIEDVRKYAG---SNIVQLLIGNKSDLS 147 (201)
T ss_dssp EEEEEECCTTCGGGHH-HHHHHH-----TTCSEEEEEEETTBH-HHHHTHHHHHHHHHHHSC---TTCEEEEEEECTTCG
T ss_pred EEEEEEECCCcHhHHH-HHHHHH-----hhCCEEEEEEECCCH-HHHHHHHHHHHHHHHhcC---CCCCEEEEEECCccc
Confidence 4577999999765432 222222 456788888887643 233334444444443321 223456888999975
Q ss_pred Cc---cHHHHHHHHHHhCC-cEEEEe--cCCCCc
Q psy11993 587 DD---KVGAAISMTYITGQ-PIVFVG--TGQTYT 614 (630)
Q Consensus 587 ~~---~~G~~ls~~~~~g~-PI~fvg--~Gq~v~ 614 (630)
+. ..-.+..++...+. |+..+. +|+.+.
T Consensus 148 ~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~ 181 (201)
T 2hup_A 148 ELREVSLAEAQSLAEHYDILCAIETSAKDSSNVE 181 (201)
T ss_dssp GGCCSCHHHHHHHHHHTTCSEEEECBTTTTBSHH
T ss_pred cccccCHHHHHHHHHHcCCCEEEEEeCCCCCCHH
Confidence 21 23445566777787 776665 444443
No 320
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.01 E-value=0.00038 Score=72.68 Aligned_cols=52 Identities=13% Similarity=0.303 Sum_probs=37.7
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecc
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACD 448 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~D 448 (630)
.+++.+...+..|+...++|+||+|+||||++..||..+....+++.+...+
T Consensus 32 ~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~ 83 (340)
T 1sxj_C 32 EVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELN 83 (340)
T ss_dssp HHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEEC
T ss_pred HHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEc
Confidence 4556666666777432389999999999999999999887665544444433
No 321
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=97.01 E-value=0.0057 Score=61.17 Aligned_cols=35 Identities=23% Similarity=0.359 Sum_probs=30.5
Q ss_pred CeEEEEEccCCCChHHHHHHHHHHHHhcCCe-EEEe
Q psy11993 411 PFVMAFCGVNGVGKSTNLAKICFWLIENNLN-VLIA 445 (630)
Q Consensus 411 p~vi~lvGpNGvGKTTllakLA~~l~~~ggk-VlI~ 445 (630)
+.+|+|.|+.||||||.+..|+.++...+.+ +.+.
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l~~~~~~~~~~~ 62 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETLQQNGIDHITRT 62 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCCCeeeee
Confidence 3799999999999999999999999888877 5443
No 322
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=97.00 E-value=0.00049 Score=66.86 Aligned_cols=41 Identities=20% Similarity=0.326 Sum_probs=32.3
Q ss_pred ccCCCeEEEEEccCCCChHHHHHHHHHHHHh-cCCeEEEeeccc
Q psy11993 407 KQGRPFVMAFCGVNGVGKSTNLAKICFWLIE-NNLNVLIAACDT 449 (630)
Q Consensus 407 ~~g~p~vi~lvGpNGvGKTTllakLA~~l~~-~ggkVlI~~~Dt 449 (630)
..| .+|+|+|++||||||++..|+..+.+ .|..+.+++.|.
T Consensus 23 ~~~--~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~ 64 (211)
T 1m7g_A 23 QRG--LTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDN 64 (211)
T ss_dssp SSC--EEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHH
T ss_pred CCC--CEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChH
Confidence 445 89999999999999999999999984 444555555444
No 323
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.00 E-value=0.00028 Score=65.69 Aligned_cols=25 Identities=28% Similarity=0.182 Sum_probs=23.2
Q ss_pred eEEEEEccCCCChHHHHHHHHHHHH
Q psy11993 412 FVMAFCGVNGVGKSTNLAKICFWLI 436 (630)
Q Consensus 412 ~vi~lvGpNGvGKTTllakLA~~l~ 436 (630)
.+|+|+||+||||||+++.|+..+.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC
Confidence 6899999999999999999999874
No 324
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=97.00 E-value=0.0075 Score=62.98 Aligned_cols=39 Identities=18% Similarity=0.242 Sum_probs=32.4
Q ss_pred EEEEEccCCCChHHHHHHHHHHHHhc-CCeEEEeecccCC
Q psy11993 413 VMAFCGVNGVGKSTNLAKICFWLIEN-NLNVLIAACDTFR 451 (630)
Q Consensus 413 vi~lvGpNGvGKTTllakLA~~l~~~-ggkVlI~~~Dt~R 451 (630)
.++|+||+|+||||++..++..+.+. +..+..+.|....
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~ 85 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYR 85 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCC
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCC
Confidence 89999999999999999999998776 4677777765433
No 325
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=96.99 E-value=0.0051 Score=59.04 Aligned_cols=100 Identities=18% Similarity=0.130 Sum_probs=54.5
Q ss_pred CCCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCccHHHHHHHHHHHHhhcccCCC-CCCeeEEEEcccC
Q psy11993 506 HIDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQLVKFNNAMADHSLSDN-PHLIDGIVLTKFD 584 (630)
Q Consensus 506 ~~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~Dav~ql~~f~~~l~~~~~~~~-~~~i~gIIlTK~D 584 (630)
.+.+.++||+|...... +..... ...+.+++|.+.+... ....+..+ +..+..... ....-.+|+||+|
T Consensus 83 ~~~l~l~Dt~G~~~~~~-~~~~~~-----~~~d~iilV~D~~~~~-s~~~~~~~---l~~i~~~~~~~~~piilV~NK~D 152 (217)
T 2f7s_A 83 KVHLQLWDTAGQERFRS-LTTAFF-----RDAMGFLLMFDLTSQQ-SFLNVRNW---MSQLQANAYCENPDIVLIGNKAD 152 (217)
T ss_dssp EEEEEEEEEESHHHHHH-HHHHHH-----TTCCEEEEEEETTCHH-HHHHHHHH---HHTCCCCCTTTCCEEEEEEECTT
T ss_pred eEEEEEEECCCcHhHHh-HHHHHh-----cCCCEEEEEEECcCHH-HHHHHHHH---HHHHHHhcCcCCCCEEEEEECCc
Confidence 34577999999653222 222222 3567888888876432 23333333 222222111 2234578899999
Q ss_pred CcCc---cHHHHHHHHHHhCCcEEEEe--cCCCCcc
Q psy11993 585 TIDD---KVGAAISMTYITGQPIVFVG--TGQTYTD 615 (630)
Q Consensus 585 ~~~~---~~G~~ls~~~~~g~PI~fvg--~Gq~v~D 615 (630)
..+. ..-.+..++...+.|+..++ +|+.+.+
T Consensus 153 l~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~ 188 (217)
T 2f7s_A 153 LPDQREVNERQARELADKYGIPYFETSAATGQNVEK 188 (217)
T ss_dssp CGGGCCSCHHHHHHHHHHTTCCEEEEBTTTTBTHHH
T ss_pred cccccccCHHHHHHHHHHCCCcEEEEECCCCCCHHH
Confidence 7531 13345556667788887776 4444443
No 326
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=96.98 E-value=0.0021 Score=60.70 Aligned_cols=91 Identities=15% Similarity=0.102 Sum_probs=51.9
Q ss_pred CCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCccHHHHH-HHHHHHHhhcccCCCCCCeeEEEEcccCC
Q psy11993 507 IDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQL-VKFNNAMADHSLSDNPHLIDGIVLTKFDT 585 (630)
Q Consensus 507 ~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~Dav~ql-~~f~~~l~~~~~~~~~~~i~gIIlTK~D~ 585 (630)
+.+.++||+|...... +.. ......+.+++|.+.+... ....+ ..+...+..+. +...-.+|.||.|.
T Consensus 71 ~~~~i~Dt~G~~~~~~-----~~~-~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~----~~~p~ilv~nK~Dl 139 (194)
T 3reg_A 71 FILHLWDTAGQEEYDR-----LRP-LSYADSDVVLLCFAVNNRT-SFDNISTKWEPEIKHYI----DTAKTVLVGLKVDL 139 (194)
T ss_dssp EEEEEEEECCSGGGTT-----TGG-GGCTTCSEEEEEEETTCHH-HHHHHHHTHHHHHHHHC----TTSEEEEEEECGGG
T ss_pred EEEEEEECCCcHHHHH-----HhH-hhccCCcEEEEEEECCCHH-HHHHHHHHHHHHHHHhC----CCCCEEEEEEChhh
Confidence 3457899999654321 110 1123567888888876543 33332 44444454432 12355788899996
Q ss_pred cC-----ccHHHHHHHHHHhCCc-EEEEe
Q psy11993 586 ID-----DKVGAAISMTYITGQP-IVFVG 608 (630)
Q Consensus 586 ~~-----~~~G~~ls~~~~~g~P-I~fvg 608 (630)
.+ ...-.+..++...+.+ +..++
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 168 (194)
T 3reg_A 140 RKDGSDDVTKQEGDDLCQKLGCVAYIEAS 168 (194)
T ss_dssp CCTTTTCCCHHHHHHHHHHHTCSCEEECB
T ss_pred ccCCCCcccHHHHHHHHHhcCCCEEEEee
Confidence 42 2344566677778887 66654
No 327
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=96.98 E-value=0.00082 Score=63.71 Aligned_cols=102 Identities=14% Similarity=0.071 Sum_probs=51.8
Q ss_pred CCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcccCCc
Q psy11993 507 IDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTI 586 (630)
Q Consensus 507 ~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK~D~~ 586 (630)
+.+.++||+|..... .+.. ......+.+++|.+.+... ..+.+..+...+..+...........+|+||.|..
T Consensus 73 ~~~~l~Dt~G~~~~~-----~~~~-~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~ 145 (208)
T 2yc2_C 73 VELFLLDTAGSDLYK-----EQIS-QYWNGVYYAILVFDVSSME-SFESCKAWFELLKSARPDRERPLRAVLVANKTDLP 145 (208)
T ss_dssp EEEEEEETTTTHHHH-----HHHS-TTCCCCCEEEEEEETTCHH-HHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC---
T ss_pred EEEEEEECCCcHHHH-----HHHH-HHHhhCcEEEEEEECCCHH-HHHHHHHHHHHHHHhhcccccCCcEEEEEECcccc
Confidence 457799999975322 1111 1123567888888876543 34444455444544322000123557899999975
Q ss_pred C--cc--HHHHHHHHHHhCCcEEEEe--c-CCCCcc
Q psy11993 587 D--DK--VGAAISMTYITGQPIVFVG--T-GQTYTD 615 (630)
Q Consensus 587 ~--~~--~G~~ls~~~~~g~PI~fvg--~-Gq~v~D 615 (630)
. .. .-.+..++...+.|+..++ + |+.+.+
T Consensus 146 ~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~gi~~ 181 (208)
T 2yc2_C 146 PQRHQVRLDMAQDWATTNTLDFFDVSANPPGKDADA 181 (208)
T ss_dssp ----CCCHHHHHHHHHHTTCEEEECCC-------CH
T ss_pred hhhccCCHHHHHHHHHHcCCEEEEeccCCCCcCHHH
Confidence 2 11 2455566777787777655 4 555554
No 328
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=96.97 E-value=0.0065 Score=58.61 Aligned_cols=23 Identities=22% Similarity=0.314 Sum_probs=20.3
Q ss_pred CeEEEEEccCCCChHHHHHHHHH
Q psy11993 411 PFVMAFCGVNGVGKSTNLAKICF 433 (630)
Q Consensus 411 p~vi~lvGpNGvGKTTllakLA~ 433 (630)
+..|+|+|+.||||||++..|.+
T Consensus 34 ~~ki~vvG~~~vGKSsli~~l~~ 56 (214)
T 2j1l_A 34 SVKVVLVGDGGCGKTSLLMVFAD 56 (214)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHC
T ss_pred eEEEEEECcCCCCHHHHHHHHHc
Confidence 35799999999999999999873
No 329
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=96.97 E-value=0.002 Score=72.68 Aligned_cols=112 Identities=21% Similarity=0.240 Sum_probs=65.7
Q ss_pred eEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccCCCcCCcchhhhHhhhccCCCCH
Q psy11993 412 FVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHPAAKHGGREMVQLFEKGYGKDP 491 (630)
Q Consensus 412 ~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~~~~~tv~env~l~~~~~~~d~ 491 (630)
.+++|.|++|+||||+++.|+..+...+.+|++.+ .+.+ |...++.....- ..|+...+.........+.
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~A-pT~~--Aa~~L~e~~~~~-------a~Tih~ll~~~~~~~~~~~ 274 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCA-PTGK--AARRLGEVTGRT-------ASTVHRLLGYGPQGFRHNH 274 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEE-SSHH--HHHHHHHHHTSC-------EEEHHHHTTEETTEESCSS
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEec-CcHH--HHHHhHhhhccc-------HHHHHHHHcCCcchhhhhh
Confidence 58999999999999999999999988888998764 3433 344554322110 1111111111000000000
Q ss_pred HHHHHHHHHHhhhcCCCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccc
Q psy11993 492 AEIAFRAISHARDMHIDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEAL 547 (630)
Q Consensus 492 ~~ia~~ai~~a~~~~~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~ 547 (630)
.....+|+++||-++... ..++..|.+.+. ....+++|+|+.
T Consensus 275 ----------~~~~~~dvlIIDEasml~--~~~~~~Ll~~~~--~~~~lilvGD~~ 316 (574)
T 3e1s_A 275 ----------LEPAPYDLLIVDEVSMMG--DALMLSLLAAVP--PGARVLLVGDTD 316 (574)
T ss_dssp ----------SSCCSCSEEEECCGGGCC--HHHHHHHHTTSC--TTCEEEEEECTT
T ss_pred ----------cccccCCEEEEcCccCCC--HHHHHHHHHhCc--CCCEEEEEeccc
Confidence 012358999999998653 456666654433 223577788874
No 330
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=96.97 E-value=0.0082 Score=55.10 Aligned_cols=95 Identities=14% Similarity=0.070 Sum_probs=48.9
Q ss_pred CCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCccHHHHHHHHHHHHhhcccCC-CCCCeeEEEEcccCC
Q psy11993 507 IDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQLVKFNNAMADHSLSD-NPHLIDGIVLTKFDT 585 (630)
Q Consensus 507 ~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~Dav~ql~~f~~~l~~~~~~~-~~~~i~gIIlTK~D~ 585 (630)
+.+.++||+|...... +.... ....+.+++|.+..... ....+..+...+..+.... .....-.+|+||.|.
T Consensus 56 ~~~~i~Dt~G~~~~~~-~~~~~-----~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl 128 (177)
T 1wms_A 56 VTMQIWDTAGQERFRS-LRTPF-----YRGSDCCLLTFSVDDSQ-SFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDI 128 (177)
T ss_dssp EEEEEEECCCCGGGHH-HHGGG-----GTTCSEEEEEEETTCHH-HHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTC
T ss_pred EEEEEEeCCCchhhhh-hHHHH-----HhcCCEEEEEEECcCHH-HHHHHHHHHHHHHHHccccccCCCcEEEEEECCcc
Confidence 4577899999654321 21111 13567778777775443 2333334434443332210 112345788999996
Q ss_pred cCcc--HHHHHHHHH-HhCCcEEEEe
Q psy11993 586 IDDK--VGAAISMTY-ITGQPIVFVG 608 (630)
Q Consensus 586 ~~~~--~G~~ls~~~-~~g~PI~fvg 608 (630)
.... .-.+..++. ..+.|+..++
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~S 154 (177)
T 1wms_A 129 SERQVSTEEAQAWCRDNGDYPYFETS 154 (177)
T ss_dssp SSCSSCHHHHHHHHHHTTCCCEEECC
T ss_pred cccccCHHHHHHHHHhcCCceEEEEe
Confidence 4222 233444444 3456776655
No 331
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=96.97 E-value=0.001 Score=61.87 Aligned_cols=93 Identities=11% Similarity=-0.016 Sum_probs=49.7
Q ss_pred CCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcccCCc
Q psy11993 507 IDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTI 586 (630)
Q Consensus 507 ~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK~D~~ 586 (630)
+.+.++||+|...... +... .....+.+++|.+.+.. +..+.+..+...+.++.. .......+|+||.|..
T Consensus 54 ~~~~l~Dt~G~~~~~~-~~~~-----~~~~~~~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~--~~~~p~ilv~nK~Dl~ 124 (181)
T 3t5g_A 54 YHLQLVDTAGQDEYSI-FPQT-----YSIDINGYILVYSVTSI-KSFEVIKVIHGKLLDMVG--KVQIPIMLVGNKKDLH 124 (181)
T ss_dssp EEEEEEECCCCCTTCC-CCGG-----GTTTCSEEEEEEETTCH-HHHHHHHHHHHHHHHHC------CCEEEEEECTTCT
T ss_pred EEEEEEeCCCchhhhH-HHHH-----HHhcCCEEEEEEECCCH-HHHHHHHHHHHHHHHhcC--CCCCCEEEEEECccch
Confidence 4567899999654211 1011 11345677777776532 334444444433433221 1123457888999953
Q ss_pred C---ccHHHHHHHHHHhCCcEEEEe
Q psy11993 587 D---DKVGAAISMTYITGQPIVFVG 608 (630)
Q Consensus 587 ~---~~~G~~ls~~~~~g~PI~fvg 608 (630)
+ ...-.+..++...+.|+..++
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~S 149 (181)
T 3t5g_A 125 MERVISYEEGKALAESWNAAFLESS 149 (181)
T ss_dssp TTCCSCHHHHHHHHHHTTCEEEECC
T ss_pred hcceecHHHHHHHHHHhCCcEEEEe
Confidence 2 123456667777888876654
No 332
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.97 E-value=0.0033 Score=60.20 Aligned_cols=22 Identities=18% Similarity=0.149 Sum_probs=20.2
Q ss_pred eEEEEEccCCCChHHHHHHHHH
Q psy11993 412 FVMAFCGVNGVGKSTNLAKICF 433 (630)
Q Consensus 412 ~vi~lvGpNGvGKTTllakLA~ 433 (630)
..|+|+|+.||||||++..|.+
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~ 47 (207)
T 2fv8_A 26 KKLVVVGDGACGKTCLLIVFSK 47 (207)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEEECcCCCCHHHHHHHHhc
Confidence 6799999999999999998875
No 333
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=96.96 E-value=0.0023 Score=60.99 Aligned_cols=69 Identities=17% Similarity=0.211 Sum_probs=38.4
Q ss_pred CCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCccHHHHH-HHHHHHHhhcccCCCCCCeeEEEEcccCC
Q psy11993 507 IDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQL-VKFNNAMADHSLSDNPHLIDGIVLTKFDT 585 (630)
Q Consensus 507 ~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~Dav~ql-~~f~~~l~~~~~~~~~~~i~gIIlTK~D~ 585 (630)
+.+.++||+|...... +.. ......+.+++|.+.... +....+ ..+...+..+.. ...-.+|+||+|.
T Consensus 73 ~~l~i~Dt~G~~~~~~-----~~~-~~~~~~d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~----~~piilv~nK~Dl 141 (201)
T 2gco_A 73 VELALWDTAGQEDYDR-----LRP-LSYPDTDVILMCFSIDSP-DSLENIPEKWTPEVKHFCP----NVPIILVGNKKDL 141 (201)
T ss_dssp EEEEEECCCCSGGGTT-----TGG-GGCTTCSEEEEEEETTCH-HHHHHHHHTHHHHHHHHST----TCCEEEEEECGGG
T ss_pred EEEEEEECCCchhHHH-----HHH-HhcCCCCEEEEEEECCCH-HHHHHHHHHHHHHHHHhCC----CCCEEEEEecHHh
Confidence 4567899999653221 111 112356788888776543 233333 344444544321 2345789999997
Q ss_pred c
Q psy11993 586 I 586 (630)
Q Consensus 586 ~ 586 (630)
.
T Consensus 142 ~ 142 (201)
T 2gco_A 142 R 142 (201)
T ss_dssp T
T ss_pred h
Confidence 5
No 334
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=96.96 E-value=0.00054 Score=70.34 Aligned_cols=23 Identities=26% Similarity=0.240 Sum_probs=20.9
Q ss_pred eEEEEEccCCCChHHHHHHHHHH
Q psy11993 412 FVMAFCGVNGVGKSTNLAKICFW 434 (630)
Q Consensus 412 ~vi~lvGpNGvGKTTllakLA~~ 434 (630)
..|+|+|.+||||||++..|++.
T Consensus 25 ~~I~vvG~~~~GKSTlln~l~g~ 47 (315)
T 1jwy_B 25 PQIVVVGSQSSGKSSVLENIVGR 47 (315)
T ss_dssp CEEEEEECSSSSHHHHHHHHHTS
T ss_pred CeEEEEcCCCCCHHHHHHHHHCC
Confidence 47999999999999999999864
No 335
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.95 E-value=9.3e-05 Score=74.45 Aligned_cols=32 Identities=22% Similarity=0.346 Sum_probs=25.6
Q ss_pred eEEEEEccCCCChHHHHHHHH---HHHHhcCCeEE
Q psy11993 412 FVMAFCGVNGVGKSTNLAKIC---FWLIENNLNVL 443 (630)
Q Consensus 412 ~vi~lvGpNGvGKTTllakLA---~~l~~~ggkVl 443 (630)
.+|+|+||+||||||+++.|+ ++..++.|.+.
T Consensus 28 ~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~ 62 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIY 62 (252)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCcee
Confidence 799999999999999999999 44444444444
No 336
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=96.95 E-value=0.0067 Score=55.09 Aligned_cols=99 Identities=8% Similarity=-0.017 Sum_probs=46.5
Q ss_pred CCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcccCCc
Q psy11993 507 IDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTI 586 (630)
Q Consensus 507 ~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK~D~~ 586 (630)
+.+.+.||+|...... +..... ...+.+++|.+.... +..+.+..+...+..+.. .+...-.+|.||.|..
T Consensus 49 ~~~~i~D~~g~~~~~~-~~~~~~-----~~~~~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~--~~~~p~ilv~nK~Dl~ 119 (166)
T 3q72_A 49 ASLMVYDIWEQDGGRW-LPGHCM-----AMGDAYVIVYSVTDK-GSFEKASELRVQLRRARQ--TDDVPIILVGNKSDLV 119 (166)
T ss_dssp EEEEEEECC---------------------CCEEEEEEETTCH-HHHHHHHHHHHHHHHCC-----CCCEEEEEECTTCC
T ss_pred EEEEEEECCCCccchh-hhhhhh-----hhCCEEEEEEECCCH-HHHHHHHHHHHHHHHhcC--CCCCCEEEEEeccccc
Confidence 3566889998654321 222211 345667777666533 344444444444433321 1123457889999964
Q ss_pred Cc---cHHHHHHHHHHhCCcEEEEe--cCCCCc
Q psy11993 587 DD---KVGAAISMTYITGQPIVFVG--TGQTYT 614 (630)
Q Consensus 587 ~~---~~G~~ls~~~~~g~PI~fvg--~Gq~v~ 614 (630)
.. ..-.+..++...+.|+..++ +|+.+.
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 152 (166)
T 3q72_A 120 RSREVSVDEGRACAVVFDCKFIETSAALHHNVQ 152 (166)
T ss_dssp SSCCSCHHHHHHHHHHTTCEEEECBGGGTBSHH
T ss_pred cccccCHHHHHHHHHHhCCcEEEeccCCCCCHH
Confidence 21 22334456666788877665 444443
No 337
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.95 E-value=0.0005 Score=69.34 Aligned_cols=40 Identities=30% Similarity=0.488 Sum_probs=33.7
Q ss_pred CeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccC
Q psy11993 411 PFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTF 450 (630)
Q Consensus 411 p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~ 450 (630)
+.+|+|+|++||||||++..|+..+...+..+.+++.|.+
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~ 43 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLI 43 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHH
Confidence 4799999999999999999999988776777766676653
No 338
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=96.94 E-value=0.001 Score=72.69 Aligned_cols=72 Identities=21% Similarity=0.312 Sum_probs=37.0
Q ss_pred CCCeeeeccccchhch---HHHHHHHHhhhhhcCCCeEEEEeccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 506 HIDVVLIDTAGRMQDN---EPLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 506 ~~D~vlIDTaGr~~~~---~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
+..+.++||+|..... ...++.+... ....+|.+|+|.|+..+....+. .+.+.++.. .....+++||
T Consensus 70 ~~~~~liDT~G~~~~~~~~~~~~~~~~~~-~~~~ad~il~VvD~~~~~~~~d~--~l~~~l~~~------~~pvilV~NK 140 (456)
T 4dcu_A 70 NYDFNLIDTGGIDIGDEPFLAQIRQQAEI-AMDEADVIIFMVNGREGVTAADE--EVAKILYRT------KKPVVLAVNK 140 (456)
T ss_dssp SSCCEEECCCC------CCHHHHHHHHHH-HHHHCSEEEEEEESSSCSCHHHH--HHHHHHTTC------CSCEEEEEEC
T ss_pred CceEEEEECCCCCCcchHHHHHHHHHHHh-hHhhCCEEEEEEeCCCCCChHHH--HHHHHHHHc------CCCEEEEEEC
Confidence 4567899999954211 1112222111 11357889999988877665442 333444321 1345688899
Q ss_pred cCCc
Q psy11993 583 FDTI 586 (630)
Q Consensus 583 ~D~~ 586 (630)
+|..
T Consensus 141 ~D~~ 144 (456)
T 4dcu_A 141 LDNT 144 (456)
T ss_dssp C---
T ss_pred ccch
Confidence 9975
No 339
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=96.93 E-value=0.0028 Score=59.53 Aligned_cols=24 Identities=25% Similarity=0.270 Sum_probs=20.9
Q ss_pred CCeEEEEEccCCCChHHHHHHHHH
Q psy11993 410 RPFVMAFCGVNGVGKSTNLAKICF 433 (630)
Q Consensus 410 ~p~vi~lvGpNGvGKTTllakLA~ 433 (630)
+...|+|+|+.||||||++..|.+
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~ 45 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLIN 45 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 346899999999999999999874
No 340
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=96.91 E-value=0.0027 Score=58.70 Aligned_cols=97 Identities=11% Similarity=-0.022 Sum_probs=50.9
Q ss_pred CCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcccCCc
Q psy11993 507 IDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTI 586 (630)
Q Consensus 507 ~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK~D~~ 586 (630)
+.+.+.||+|.... ..+ .+.+.+++|-+.+.. +....+..+.+.+..+.....+..+-.+|.||.|..
T Consensus 54 ~~l~i~Dt~G~~~~-----~~~------~~~d~~ilv~D~~~~-~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~ 121 (178)
T 2iwr_A 54 HLVLIREEAGAPDA-----KFS------GWADAVIFVFSLEDE-NSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRIS 121 (178)
T ss_dssp EEEEEEECSSSCCH-----HHH------HHCSEEEEEEETTCH-HHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCB
T ss_pred EEEEEEECCCCchh-----HHH------HhCCEEEEEEECcCH-HHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 34568899996541 111 235678888877543 234444443333433322111223557888999962
Q ss_pred ---C--ccHHHHHHHHHHh-CCcEEEEe--cCCCCcc
Q psy11993 587 ---D--DKVGAAISMTYIT-GQPIVFVG--TGQTYTD 615 (630)
Q Consensus 587 ---~--~~~G~~ls~~~~~-g~PI~fvg--~Gq~v~D 615 (630)
. ...-.+..++... +.|+..++ +|+.+.+
T Consensus 122 ~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 158 (178)
T 2iwr_A 122 ASSPRVVGDARARALXADMKRCSYYETXATYGLNVDR 158 (178)
T ss_dssp TTBCCCSCHHHHHHHHHHHSSEEEEEEBTTTTBTHHH
T ss_pred ccccCcCCHHHHHHHHHhhcCCeEEEEeccccCCHHH
Confidence 1 1223344455554 56776665 4555443
No 341
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=96.91 E-value=0.007 Score=57.65 Aligned_cols=98 Identities=14% Similarity=0.106 Sum_probs=53.2
Q ss_pred CCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcccCCc
Q psy11993 507 IDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTI 586 (630)
Q Consensus 507 ~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK~D~~ 586 (630)
+.+.++||+|...... +..... ...+.+++|.+.+... ....+..+...+..+.. +...-.+|+||.|..
T Consensus 74 ~~l~l~Dt~G~~~~~~-~~~~~~-----~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~ 143 (200)
T 2o52_A 74 VKLQIWDTAGQERFRS-VTRSYY-----RGAAGALLVYDITSRE-TYNSLAAWLTDARTLAS---PNIVVILCGNKKDLD 143 (200)
T ss_dssp EEEEEECCTTHHHHSC-CCHHHH-----TTCSEEEEEEETTCHH-HHHTHHHHHHHHHHHTC---TTCEEEEEEECGGGG
T ss_pred eEEEEEcCCCcHhHHH-HHHHHh-----ccCCEEEEEEECcCHH-HHHHHHHHHHHHHHhcC---CCCcEEEEEECCCcc
Confidence 4577899999543211 111111 3567888888876542 33333333333333221 223457888999964
Q ss_pred Cc---cHHHHHHHHHHhCCcEEEEe--cCCCCc
Q psy11993 587 DD---KVGAAISMTYITGQPIVFVG--TGQTYT 614 (630)
Q Consensus 587 ~~---~~G~~ls~~~~~g~PI~fvg--~Gq~v~ 614 (630)
+. ..-.+..++...+.|+..++ +|+.+.
T Consensus 144 ~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~gi~ 176 (200)
T 2o52_A 144 PEREVTFLEASRFAQENELMFLETSALTGENVE 176 (200)
T ss_dssp GGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHH
T ss_pred cccccCHHHHHHHHHHcCCEEEEEeCCCCCCHH
Confidence 21 12345566667788877765 344443
No 342
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=96.91 E-value=0.0033 Score=59.12 Aligned_cols=23 Identities=22% Similarity=0.525 Sum_probs=20.3
Q ss_pred CeEEEEEccCCCChHHHHHHHHH
Q psy11993 411 PFVMAFCGVNGVGKSTNLAKICF 433 (630)
Q Consensus 411 p~vi~lvGpNGvGKTTllakLA~ 433 (630)
+..|+|+|..||||||++..|.+
T Consensus 17 ~~ki~v~G~~~~GKSsl~~~l~~ 39 (199)
T 4bas_A 17 KLQVVMCGLDNSGKTTIINQVKP 39 (199)
T ss_dssp EEEEEEECCTTSCHHHHHHHHSC
T ss_pred CcEEEEECCCCCCHHHHHHHHhc
Confidence 46899999999999999998863
No 343
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=96.91 E-value=0.0043 Score=61.99 Aligned_cols=23 Identities=26% Similarity=0.241 Sum_probs=20.5
Q ss_pred CeEEEEEccCCCChHHHHHHHHH
Q psy11993 411 PFVMAFCGVNGVGKSTNLAKICF 433 (630)
Q Consensus 411 p~vi~lvGpNGvGKTTllakLA~ 433 (630)
+-.|+|||.+||||||+++.|.+
T Consensus 21 ~l~I~lvG~~g~GKSSlin~l~~ 43 (247)
T 3lxw_A 21 TRRLILVGRTGAGKSATGNSILG 43 (247)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHT
T ss_pred ceEEEEECCCCCcHHHHHHHHhC
Confidence 36799999999999999999874
No 344
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=96.90 E-value=0.0016 Score=60.39 Aligned_cols=97 Identities=22% Similarity=0.210 Sum_probs=51.5
Q ss_pred CCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCccHHHHHH-HHHHHHhhcccCCCCCCeeEEEEcccCC
Q psy11993 507 IDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQLV-KFNNAMADHSLSDNPHLIDGIVLTKFDT 585 (630)
Q Consensus 507 ~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~Dav~ql~-~f~~~l~~~~~~~~~~~i~gIIlTK~D~ 585 (630)
+.+.++||+|..... .+... .....+.+++|.+.+... ....+. .+...+..+.. ...-.+|+||+|.
T Consensus 53 ~~~~i~Dt~G~~~~~-----~~~~~-~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~----~~piilv~nK~Dl 121 (186)
T 1mh1_A 53 VNLGLWDTAGQEDYD-----RLRPL-SYPQTDVSLICFSLVSPA-SFENVRAKWYPEVRHHCP----NTPIILVGTKLDL 121 (186)
T ss_dssp EEEEEECCCCSGGGT-----TTGGG-GCTTCSEEEEEEETTCHH-HHHHHHHTHHHHHHHHST----TSCEEEEEECHHH
T ss_pred EEEEEEECCCCHhHH-----HHHHH-hccCCcEEEEEEECCChh-hHHHHHHHHHHHHHHhCC----CCCEEEEeEcccc
Confidence 356689999975432 11111 123567888888876542 233332 34444443321 2345789999997
Q ss_pred cCc---------------cHHHHHHHHHHhCC-cEEEEe--cCCCCc
Q psy11993 586 IDD---------------KVGAAISMTYITGQ-PIVFVG--TGQTYT 614 (630)
Q Consensus 586 ~~~---------------~~G~~ls~~~~~g~-PI~fvg--~Gq~v~ 614 (630)
.+. ..-.+..++...+. |+..++ +|+.+.
T Consensus 122 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~ 168 (186)
T 1mh1_A 122 RDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLK 168 (186)
T ss_dssp HTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHH
T ss_pred cccchhhhhhcccccccCCHHHHHHHHHhcCCcEEEEecCCCccCHH
Confidence 522 11233445556675 776655 454443
No 345
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.88 E-value=0.00048 Score=66.43 Aligned_cols=35 Identities=29% Similarity=0.441 Sum_probs=29.4
Q ss_pred eEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccC
Q psy11993 412 FVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTF 450 (630)
Q Consensus 412 ~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~ 450 (630)
.+|+|+|++||||||++..|+..+. .+.++..|.+
T Consensus 22 ~~i~i~G~~GsGKSTl~~~L~~~~~----~~~~i~~D~~ 56 (207)
T 2qt1_A 22 FIIGISGVTNSGKTTLAKNLQKHLP----NCSVISQDDF 56 (207)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTTST----TEEEEEGGGG
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC----CcEEEeCCcc
Confidence 8999999999999999999998653 4667777754
No 346
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=96.87 E-value=0.0019 Score=62.51 Aligned_cols=91 Identities=16% Similarity=0.119 Sum_probs=53.3
Q ss_pred CCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCccHHHH-HHHHHHHHhhcccCCCCCCeeEEEEcccCC
Q psy11993 507 IDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQ-LVKFNNAMADHSLSDNPHLIDGIVLTKFDT 585 (630)
Q Consensus 507 ~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~Dav~q-l~~f~~~l~~~~~~~~~~~i~gIIlTK~D~ 585 (630)
+.+.++||+|...... +... .....+.+++|.+.+... .... +..+...+..+. +...-.+|.||.|.
T Consensus 75 ~~l~i~Dt~G~~~~~~-~~~~-----~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~i~~~~----~~~piilv~nK~Dl 143 (214)
T 3q3j_B 75 VELSLWDTSGSPYYDN-VRPL-----CYSDSDAVLLCFDISRPE-TVDSALKKWRTEILDYC----PSTRVLLIGCKTDL 143 (214)
T ss_dssp EEEEEEEECCSGGGTT-TGGG-----GCTTCSEEEEEEETTCTH-HHHHHHTHHHHHHHHHC----TTSEEEEEEECGGG
T ss_pred EEEEEEECCCCHhHHH-HHHH-----HcCCCeEEEEEEECcCHH-HHHHHHHHHHHHHHHhC----CCCCEEEEEEChhh
Confidence 4567899999654221 1111 113567888888887643 3333 455555555443 22355788899997
Q ss_pred cC---------------ccHHHHHHHHHHhCC-cEEEEe
Q psy11993 586 ID---------------DKVGAAISMTYITGQ-PIVFVG 608 (630)
Q Consensus 586 ~~---------------~~~G~~ls~~~~~g~-PI~fvg 608 (630)
.+ ...-.+..++...+. |+..++
T Consensus 144 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~S 182 (214)
T 3q3j_B 144 RTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGS 182 (214)
T ss_dssp GGCHHHHHHHHHTTCCCCCHHHHHHHHHHHTCSEEEECC
T ss_pred ccchhhhhhhcccccCccCHHHHHHHHHHcCCCEEEEec
Confidence 42 123445667777787 766655
No 347
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.87 E-value=0.0042 Score=64.55 Aligned_cols=39 Identities=15% Similarity=0.249 Sum_probs=31.2
Q ss_pred CCeEEEEEccCCCChHHHHHHHHHHHHhc---CCeEEEeecc
Q psy11993 410 RPFVMAFCGVNGVGKSTNLAKICFWLIEN---NLNVLIAACD 448 (630)
Q Consensus 410 ~p~vi~lvGpNGvGKTTllakLA~~l~~~---ggkVlI~~~D 448 (630)
.+..++|+||+|+||||++..++..+.+. +..+..+.|.
T Consensus 44 ~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~ 85 (386)
T 2qby_A 44 KPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTR 85 (386)
T ss_dssp CCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECC
Confidence 44789999999999999999999988765 4455555554
No 348
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=96.87 E-value=0.00071 Score=64.14 Aligned_cols=92 Identities=18% Similarity=0.132 Sum_probs=49.5
Q ss_pred CCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcccCCc
Q psy11993 507 IDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTI 586 (630)
Q Consensus 507 ~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK~D~~ 586 (630)
+.+.++||+|....+.. ..... ...+.+++|.+.+... ....+..+.+.+..+.. ....-.+|+||+|..
T Consensus 75 ~~l~l~Dt~G~~~~~~~-~~~~~-----~~~d~iilV~D~~~~~-s~~~~~~~~~~i~~~~~---~~~piilV~NK~Dl~ 144 (192)
T 2il1_A 75 IRLQIWDTAGQERFNSI-TSAYY-----RSAKGIILVYDITKKE-TFDDLPKWMKMIDKYAS---EDAELLLVGNKLDCE 144 (192)
T ss_dssp EEEEEEEECCSGGGHHH-HHHHH-----HHCSEEEEEEETTCHH-HHHTHHHHHHHHHHHSC---TTCEEEEEEECGGGG
T ss_pred EEEEEEeCCCcHHHHHH-HHHHh-----cCCCEEEEEEECcCHH-HHHHHHHHHHHHHHhcC---CCCcEEEEEECcccc
Confidence 45778999996654332 22222 2457888888876543 33334444444444322 123457889999974
Q ss_pred Ccc---HHHHHHHHHH-hCCcEEEEe
Q psy11993 587 DDK---VGAAISMTYI-TGQPIVFVG 608 (630)
Q Consensus 587 ~~~---~G~~ls~~~~-~g~PI~fvg 608 (630)
+.+ .-.+..++.. .+.|+..++
T Consensus 145 ~~~~v~~~~~~~~~~~~~~~~~~~~S 170 (192)
T 2il1_A 145 TDREITRQQGEKFAQQITGMRFCEAS 170 (192)
T ss_dssp GGCCSCHHHHHHHHHTSTTCEEEECB
T ss_pred cccccCHHHHHHHHHhcCCCeEEEEe
Confidence 211 2233344443 256665554
No 349
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=96.86 E-value=0.002 Score=68.50 Aligned_cols=23 Identities=13% Similarity=0.185 Sum_probs=20.5
Q ss_pred eEEEEEccCCCChHHHHHHHHHH
Q psy11993 412 FVMAFCGVNGVGKSTNLAKICFW 434 (630)
Q Consensus 412 ~vi~lvGpNGvGKTTllakLA~~ 434 (630)
.+++|+|++||||||+++.|++.
T Consensus 180 ~~V~lvG~~naGKSTLln~L~~~ 202 (364)
T 2qtf_A 180 PSIGIVGYTNSGKTSLFNSLTGL 202 (364)
T ss_dssp CEEEEECBTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHHCC
Confidence 36999999999999999999853
No 350
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=96.86 E-value=0.0045 Score=68.11 Aligned_cols=101 Identities=12% Similarity=0.086 Sum_probs=52.8
Q ss_pred CCCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCcc-----HHHHHHHHHHHHhhcccCCCCCCeeEEEE
Q psy11993 506 HIDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNE-----AVDQLVKFNNAMADHSLSDNPHLIDGIVL 580 (630)
Q Consensus 506 ~~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~D-----av~ql~~f~~~l~~~~~~~~~~~i~gIIl 580 (630)
++.+.++||||...........+ ...|.+|+|.++..|.- ...|.......+... ....-.+++
T Consensus 110 ~~~~~iiDTPG~~~f~~~~~~~~------~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~-----~~~~iIvvi 178 (483)
T 3p26_A 110 RANFTIVDAPGHRDFVPNAIMGI------SQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSL-----GIHNLIIAM 178 (483)
T ss_dssp SCEEEEECCCCCGGGHHHHHHHH------TTCSEEEEEEECCC------CCCCHHHHHHHHHHHHT-----TCCCEEEEE
T ss_pred CceEEEEECCCcHHHHHHHHHhh------hhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHc-----CCCcEEEEE
Confidence 45678999999865433333333 35788999999877621 112332222222211 112246789
Q ss_pred cccCCcCcc---HH----HHHHHHHHhC-----CcEEEEe--cCCCCccCC
Q psy11993 581 TKFDTIDDK---VG----AAISMTYITG-----QPIVFVG--TGQTYTDLK 617 (630)
Q Consensus 581 TK~D~~~~~---~G----~~ls~~~~~g-----~PI~fvg--~Gq~v~DL~ 617 (630)
||+|..+.. .- .+.......| .|+..++ +|+++.++.
T Consensus 179 NK~Dl~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~el~ 229 (483)
T 3p26_A 179 NKMDNVDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKIE 229 (483)
T ss_dssp ECGGGGTTCHHHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSSSC
T ss_pred ECcCcccchHHHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCccccC
Confidence 999986311 11 1222223333 4555554 788877654
No 351
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=96.85 E-value=0.0047 Score=57.62 Aligned_cols=22 Identities=36% Similarity=0.394 Sum_probs=19.5
Q ss_pred eEEEEEccCCCChHHHHHHHHH
Q psy11993 412 FVMAFCGVNGVGKSTNLAKICF 433 (630)
Q Consensus 412 ~vi~lvGpNGvGKTTllakLA~ 433 (630)
..|+|+|+.||||||++..|.+
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~ 45 (195)
T 3pqc_A 24 GEVAFVGRSNVGKSSLLNALFN 45 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 5789999999999999998853
No 352
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.85 E-value=0.003 Score=57.87 Aligned_cols=20 Identities=30% Similarity=0.380 Sum_probs=18.6
Q ss_pred eEEEEEccCCCChHHHHHHH
Q psy11993 412 FVMAFCGVNGVGKSTNLAKI 431 (630)
Q Consensus 412 ~vi~lvGpNGvGKTTllakL 431 (630)
.+|+|+||+||||||++..|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 48999999999999999988
No 353
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=96.84 E-value=0.0045 Score=57.42 Aligned_cols=98 Identities=13% Similarity=0.136 Sum_probs=48.0
Q ss_pred CCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcccCCc
Q psy11993 507 IDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTI 586 (630)
Q Consensus 507 ~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK~D~~ 586 (630)
+.+.++||+|..... .+.. ......+.+++|.+.+.. +....+..+...+..+.. +...-.+|+||.|..
T Consensus 57 ~~~~l~Dt~G~~~~~-----~~~~-~~~~~~d~~i~v~d~~~~-~s~~~~~~~~~~i~~~~~---~~~piilv~nK~Dl~ 126 (183)
T 2fu5_C 57 IKLQIWDTAGQERFR-----TITT-AYYRGAMGIMLVYDITNE-KSFDNIRNWIRNIEEHAS---ADVEKMILGNKCDVN 126 (183)
T ss_dssp EEEEEEEC--------------CC-TTTTTCSEEEEEEETTCH-HHHHHHHHHHHHHHHHSC---TTCEEEEEEEC--CC
T ss_pred EEEEEEcCCCChhhh-----hhHH-HHHhcCCEEEEEEECcCH-HHHHHHHHHHHHHHHhcC---CCCCEEEEEECccCC
Confidence 456789999964321 1111 111356788888887653 234444444444443321 223457889999975
Q ss_pred Cc---cHHHHHHHHHHhCCcEEEEe--cCCCCc
Q psy11993 587 DD---KVGAAISMTYITGQPIVFVG--TGQTYT 614 (630)
Q Consensus 587 ~~---~~G~~ls~~~~~g~PI~fvg--~Gq~v~ 614 (630)
+. ..-.+..++...+.|+..++ +|+.+.
T Consensus 127 ~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 159 (183)
T 2fu5_C 127 DKRQVSKERGEKLALDYGIKFMETSAKANINVE 159 (183)
T ss_dssp SCCCSCHHHHHHHHHHHTCEEEECCC---CCHH
T ss_pred ccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHH
Confidence 31 23445566777788877654 344443
No 354
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.83 E-value=0.0028 Score=64.52 Aligned_cols=41 Identities=17% Similarity=0.233 Sum_probs=35.7
Q ss_pred eEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCc
Q psy11993 412 FVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRA 452 (630)
Q Consensus 412 ~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ 452 (630)
..++|+||+|+||||++..|+..+...++.+..++|..+..
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~~~ 88 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYME 88 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGCCS
T ss_pred eEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecccccc
Confidence 58999999999999999999999988788888888876543
No 355
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=96.82 E-value=0.0031 Score=68.88 Aligned_cols=99 Identities=20% Similarity=0.257 Sum_probs=55.5
Q ss_pred CCeeeeccccch--------hchHHHHHHHHhhhhhcCCCeEEEEeccccCccHHHHHHHHHHHHhhcccCCCCCCeeEE
Q psy11993 507 IDVVLIDTAGRM--------QDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGI 578 (630)
Q Consensus 507 ~D~vlIDTaGr~--------~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gI 578 (630)
..+.++||||.. +.....++.+. .....+.+++|.|++.+.... ...+...+... .....+
T Consensus 243 ~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~---~~~~ad~~llviD~~~~~~~~--~~~~~~~~~~~------~~~~il 311 (456)
T 4dcu_A 243 QEFVIVDTAGMRKKGKVYETTEKYSVLRALK---AIDRSEVVAVVLDGEEGIIEQ--DKRIAGYAHEA------GKAVVI 311 (456)
T ss_dssp EEEEETTGGGTTTBTTBCCCCSHHHHHHHHH---HHHHCSEEEEEEETTTCCCHH--HHHHHHHHHHT------TCEEEE
T ss_pred ceEEEEECCCCCcCcccchHHHHHHHHHHHH---HHhhCCEEEEEEeCCCCcCHH--HHHHHHHHHHc------CCCEEE
Confidence 357799999942 22233333332 123457888888888765432 23333333221 134578
Q ss_pred EEcccCCcCcc---HHHHHHHHHHh-----CCcEEEEe--cCCCCccC
Q psy11993 579 VLTKFDTIDDK---VGAAISMTYIT-----GQPIVFVG--TGQTYTDL 616 (630)
Q Consensus 579 IlTK~D~~~~~---~G~~ls~~~~~-----g~PI~fvg--~Gq~v~DL 616 (630)
|+||+|..+.. .-.+...+... +.|+.+++ +|+++.+|
T Consensus 312 v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l 359 (456)
T 4dcu_A 312 VVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILFMSALTKKRIHTL 359 (456)
T ss_dssp EEECGGGSCCCSSHHHHHHHHHHHHCGGGTTSCEEECCTTTCTTGGGH
T ss_pred EEEChhcCCCchHHHHHHHHHHHHhcccCCCCCEEEEcCCCCcCHHHH
Confidence 89999975321 22333333333 57998887 67777654
No 356
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.81 E-value=0.0052 Score=57.53 Aligned_cols=71 Identities=11% Similarity=0.040 Sum_probs=37.1
Q ss_pred CCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcccCCc
Q psy11993 507 IDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTI 586 (630)
Q Consensus 507 ~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK~D~~ 586 (630)
+.+.++||+|....+.. ..... ...|.+++|.+.+...........+.+.+. +.. .....-.+|+||.|..
T Consensus 60 ~~~~i~Dt~G~~~~~~~-~~~~~-----~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~-~~~--~~~~piilv~NK~Dl~ 130 (187)
T 1zj6_A 60 TRFLMWDIGGQESLRSS-WNTYY-----TNTEFVIVVVDSTDRERISVTREELYKMLA-HED--LRKAGLLIFANKQDVK 130 (187)
T ss_dssp EEEEEEECCC----CGG-GHHHH-----TTCCEEEEEEETTCTTTHHHHHHHHHHHHT-SGG--GTTCEEEEEEECTTST
T ss_pred EEEEEEECCCCHhHHHH-HHHHh-----cCCCEEEEEEeCCCHHHHHHHHHHHHHHHh-chh--hCCCeEEEEEECCCCc
Confidence 45779999997543221 12222 457788888888766432222223333322 110 0123557889999975
No 357
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=96.81 E-value=0.0057 Score=66.57 Aligned_cols=23 Identities=30% Similarity=0.362 Sum_probs=20.5
Q ss_pred eEEEEEccCCCChHHHHHHHHHH
Q psy11993 412 FVMAFCGVNGVGKSTNLAKICFW 434 (630)
Q Consensus 412 ~vi~lvGpNGvGKTTllakLA~~ 434 (630)
-.|+++|..++|||||+..|.+.
T Consensus 18 ~~i~iiG~~d~GKSTL~~~Ll~~ 40 (439)
T 3j2k_7 18 VNVVFIGHVDAGKSTIGGQIMYL 40 (439)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHH
Confidence 57999999999999999998654
No 358
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=96.81 E-value=0.01 Score=58.90 Aligned_cols=52 Identities=21% Similarity=0.305 Sum_probs=38.2
Q ss_pred CCeEEEEEccCCCChHHHHHHHHHHHHh-cCCeEEEeecccCCccHHHHHHHH
Q psy11993 410 RPFVMAFCGVNGVGKSTNLAKICFWLIE-NNLNVLIAACDTFRAGAVEQLRTH 461 (630)
Q Consensus 410 ~p~vi~lvGpNGvGKTTllakLA~~l~~-~ggkVlI~~~Dt~R~ga~eQLr~~ 461 (630)
++.+|+|.|+.||||||.+..|+.++.. .+.+|.+....+......+.+|.+
T Consensus 20 ~~~~i~~~G~~g~GKst~~~~l~~~l~~~~g~~v~~~treP~~t~~g~~ir~~ 72 (223)
T 3ld9_A 20 GSMFITFEGIDGSGKTTQSHLLAEYLSEIYGVNNVVLTREPGGTLLNESVRNL 72 (223)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHHHCGGGEEEEESSCSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhccCceeeEeeeCCCCChHHHHHHHH
Confidence 3489999999999999999999999988 787877734333232223445544
No 359
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.81 E-value=0.0016 Score=63.08 Aligned_cols=40 Identities=10% Similarity=0.058 Sum_probs=34.8
Q ss_pred CeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccC
Q psy11993 411 PFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTF 450 (630)
Q Consensus 411 p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~ 450 (630)
+..+.|+||+|+||||++..|+..+...+..+..+.+..+
T Consensus 52 ~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~ 91 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIH 91 (242)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGG
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHH
Confidence 3689999999999999999999998887888888887653
No 360
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=96.79 E-value=0.0046 Score=68.20 Aligned_cols=51 Identities=16% Similarity=0.067 Sum_probs=39.9
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhc-CCeEEEeeccc
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIEN-NLNVLIAACDT 449 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~-ggkVlI~~~Dt 449 (630)
.-|+.+.--+.+| .++.|.|++|+||||++..+|...... +.+|++++...
T Consensus 230 ~~LD~~lgGl~~G--~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~E~ 281 (503)
T 1q57_A 230 TGINDKTLGARGG--EVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAMLEE 281 (503)
T ss_dssp TTHHHHHCCCCTT--CEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEESSS
T ss_pred hhhhHhhcccCCC--eEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEeccC
Confidence 3444443234566 899999999999999999999877665 78999998765
No 361
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=96.79 E-value=0.00066 Score=66.24 Aligned_cols=25 Identities=20% Similarity=0.187 Sum_probs=23.2
Q ss_pred eEEEEEccCCCChHHHHHHHHHHHH
Q psy11993 412 FVMAFCGVNGVGKSTNLAKICFWLI 436 (630)
Q Consensus 412 ~vi~lvGpNGvGKTTllakLA~~l~ 436 (630)
++++|+||+||||||+++.|+..+.
T Consensus 20 ~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 20 KTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CEEEEECcCCCCHHHHHHHHHhhCC
Confidence 8999999999999999999998764
No 362
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=96.78 E-value=0.0052 Score=67.44 Aligned_cols=23 Identities=30% Similarity=0.277 Sum_probs=21.0
Q ss_pred eEEEEEccCCCChHHHHHHHHHH
Q psy11993 412 FVMAFCGVNGVGKSTNLAKICFW 434 (630)
Q Consensus 412 ~vi~lvGpNGvGKTTllakLA~~ 434 (630)
..|+|+|++||||||+++.|++.
T Consensus 225 ~kV~ivG~~nvGKSSLln~L~~~ 247 (462)
T 3geh_A 225 LKVAIVGRPNVGKSSLLNAWSQS 247 (462)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHhCC
Confidence 67999999999999999999874
No 363
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=96.78 E-value=0.0026 Score=59.92 Aligned_cols=97 Identities=16% Similarity=0.114 Sum_probs=53.0
Q ss_pred CCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCccHHHHHH-HHHHHHhhcccCCCCCCeeEEEEcccCC
Q psy11993 507 IDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQLV-KFNNAMADHSLSDNPHLIDGIVLTKFDT 585 (630)
Q Consensus 507 ~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~Dav~ql~-~f~~~l~~~~~~~~~~~i~gIIlTK~D~ 585 (630)
+.+.++||+|....+. +... ...+.+.+++|.+.+... ....+. .+...+..+.. ...-.+|.||.|.
T Consensus 66 ~~~~i~D~~G~~~~~~-~~~~-----~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~----~~piilv~nK~Dl 134 (194)
T 2atx_A 66 YLLGLYDTAGQEDYDR-LRPL-----SYPMTDVFLICFSVVNPA-SFQNVKEEWVPELKEYAP----NVPFLLIGTQIDL 134 (194)
T ss_dssp EEEEEECCCCSSSSTT-TGGG-----GCTTCSEEEEEEETTCHH-HHHHHHHTHHHHHHHHST----TCCEEEEEECTTS
T ss_pred EEEEEEECCCCcchhH-HHHH-----hcCCCCEEEEEEECCCHH-HHHHHHHHHHHHHHHhCC----CCCEEEEEEChhh
Confidence 4566899999654321 1111 123567888888876432 233332 34444444321 2345789999997
Q ss_pred cCc---------------cHHHHHHHHHHhCC-cEEEEe--cCCCCc
Q psy11993 586 IDD---------------KVGAAISMTYITGQ-PIVFVG--TGQTYT 614 (630)
Q Consensus 586 ~~~---------------~~G~~ls~~~~~g~-PI~fvg--~Gq~v~ 614 (630)
.+. ..-.+..++...+. |+..++ +|+.+.
T Consensus 135 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~ 181 (194)
T 2atx_A 135 RDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLK 181 (194)
T ss_dssp TTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCEEECCTTTCTTHH
T ss_pred cccccchhhcccccCcccCHHHHHHHHHHcCCcEEEEeeCCCCCCHH
Confidence 532 12344556666776 776655 444443
No 364
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=96.77 E-value=0.012 Score=57.67 Aligned_cols=35 Identities=29% Similarity=0.396 Sum_probs=31.4
Q ss_pred eEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEee
Q psy11993 412 FVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAA 446 (630)
Q Consensus 412 ~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~ 446 (630)
.+|+|.|+.||||||.+..|+.++...+..|.+..
T Consensus 7 ~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~~ 41 (213)
T 4edh_A 7 LFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLTR 41 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCCccccc
Confidence 79999999999999999999999988888886543
No 365
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=96.74 E-value=0.0027 Score=68.87 Aligned_cols=98 Identities=21% Similarity=0.325 Sum_probs=52.7
Q ss_pred Ceeeeccccchh--------chHHHHHHHHhhhhhcCCCeEEEEeccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEE
Q psy11993 508 DVVLIDTAGRMQ--------DNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIV 579 (630)
Q Consensus 508 D~vlIDTaGr~~--------~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gII 579 (630)
.+.++||||... .....++.+. .....|.+++|.|++.+....+. .+...+.. ....-.++
T Consensus 224 ~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~---~~~~ad~~llv~D~~~~~s~~~~--~~~~~~~~------~~~~iiiv 292 (436)
T 2hjg_A 224 EFVIVDTAGMRKKGKVYETTEKYSVLRALK---AIDRSEVVAVVLDGEEGIIEQDK--RIAGYAHE------AGKAVVIV 292 (436)
T ss_dssp EEEETTHHHHTCBTTBCCCCSHHHHHHHHH---HHHHCSEEEEEEETTTCCCHHHH--HHHHHHHH------TTCEEEEE
T ss_pred EEEEEECCCcCcCccccchHHHHHHHHHHH---HHHhCCEEEEEEcCCcCCcHHHH--HHHHHHHH------cCCcEEEE
Confidence 467999999632 1222233322 12346788889998877653332 22222221 11345788
Q ss_pred EcccCCcCccH---HHHHHH-HH----HhCCcEEEEe--cCCCCccC
Q psy11993 580 LTKFDTIDDKV---GAAISM-TY----ITGQPIVFVG--TGQTYTDL 616 (630)
Q Consensus 580 lTK~D~~~~~~---G~~ls~-~~----~~g~PI~fvg--~Gq~v~DL 616 (630)
+||+|..+... -.+... .. ..+.|+.+++ +|+++.+|
T Consensus 293 ~NK~Dl~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~SA~tg~~v~~l 339 (436)
T 2hjg_A 293 VNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILFMSALTKKRIHTL 339 (436)
T ss_dssp EECGGGSCCCTTHHHHHHHHHHHHCGGGTTSCEEECCTTTCTTGGGH
T ss_pred EECccCCCcchHHHHHHHHHHHHhcccCCCCCEEEEecccCCCHHHH
Confidence 99999753221 112111 11 2367998876 67777654
No 366
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.73 E-value=0.0018 Score=64.26 Aligned_cols=38 Identities=21% Similarity=0.230 Sum_probs=34.0
Q ss_pred eEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEe--eccc
Q psy11993 412 FVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIA--ACDT 449 (630)
Q Consensus 412 ~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~--~~Dt 449 (630)
.++++.|+.|+||||++..++..+...+.+|+++ ..|.
T Consensus 13 ~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~ 52 (223)
T 2b8t_A 13 WIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDT 52 (223)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCG
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCc
Confidence 8999999999999999999999998889999998 4454
No 367
>4b93_A Vesicle-associated membrane protein 7; endocytosis, exocytosis, snare; 2.00A {Mus musculus} PDB: 2dmw_A
Probab=96.73 E-value=0.0089 Score=57.80 Aligned_cols=109 Identities=13% Similarity=0.272 Sum_probs=76.8
Q ss_pred eEEEeecCceEEEEeccCCCCCCchHHHHHHHhhhccccC---CCceeecCeEEEEEEeccccEEEEEEeccccchhcHH
Q psy11993 4 FFTIFSKGGIVLWYFQSASQIFTPSLNALIKSVILQERGG---NQVFEHNGLVLKHKLDNEFDLVFVVGFQKILQLSYVD 80 (630)
Q Consensus 4 ~~~i~t~gG~vLw~~~~~~~~~~~~in~li~~~~leer~~---~~~~~~~~~~l~w~~~n~~~lvfv~~yq~~l~l~y~d 80 (630)
.++.+.+|++||=.++..+. ....+++.+ |+.... ..+|.+++|+++|..++ |++|+++--+-..-.-.=
T Consensus 5 lYa~VArg~~iLae~t~~~g----nf~~ia~~i-L~kip~~~~k~s~~~~~y~fHyl~~~--gl~yl~i~d~~yp~r~af 77 (189)
T 4b93_A 5 LFAVVARGTTILAKHAWCGG----NFLEVTEQI-LAKIPSENNKLTYSHGNYLFHYICQD--RIVYLCITDDDFERSRAF 77 (189)
T ss_dssp EEEEEEETTEEEEEEESSEE----CHHHHHHHH-HTTCCSSSEEEEEEETTEEEEEEEET--TEEEEEEEETTSCHHHHH
T ss_pred EEEEEEeCCEEEEeCCCCCC----CHHHHHHHH-HHhCCCCCCeEEEEECCEEEEEEEeC--CeEEEEEEcCccCHHHHH
Confidence 35677899999987765422 234445554 444332 23699999999987665 689999988888777777
Q ss_pred HHHHHHHHHHHHhhhhhhcCCCcceecCccHHHHHHHHHHHH
Q psy11993 81 KLLDDVHLEFRDKYKNELGSDMHLYDYDFESTYNVLLKEAEE 122 (630)
Q Consensus 81 ~ll~~~~~~f~~~~~~~l~~~~~~~~~~f~~~f~~~l~~~e~ 122 (630)
.||+.|+.+|...|+..... ...+.|...|...|++.-.
T Consensus 78 ~fL~~i~~eF~~~~~~~~~~---~~~~~~~~~f~~~l~~~~~ 116 (189)
T 4b93_A 78 SFLNEVKKRFQTTYGSRAQT---ALPYAMNSEFSSVLAAQLK 116 (189)
T ss_dssp HHHHHHHHHHHHHHGGGGGT---CCTTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccccccc---cCCccccchhhHHHHHHHH
Confidence 89999999999999875421 1245577777777765543
No 368
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=96.73 E-value=0.013 Score=58.24 Aligned_cols=35 Identities=31% Similarity=0.552 Sum_probs=27.6
Q ss_pred eEEEEEccCCCChHHHHHHHHHHHHhc----CCeEEEee
Q psy11993 412 FVMAFCGVNGVGKSTNLAKICFWLIEN----NLNVLIAA 446 (630)
Q Consensus 412 ~vi~lvGpNGvGKTTllakLA~~l~~~----ggkVlI~~ 446 (630)
.+|+|.|+.||||||.+..|+.++... +.+|.+..
T Consensus 26 ~~I~~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v~~~r 64 (227)
T 3v9p_A 26 KFITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHVVVTR 64 (227)
T ss_dssp CEEEEECCC---CHHHHHHHHHHHHHHHGGGTCCEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhhccccceeeeeec
Confidence 799999999999999999999999776 77886543
No 369
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=96.72 E-value=0.0055 Score=58.05 Aligned_cols=23 Identities=26% Similarity=0.468 Sum_probs=20.3
Q ss_pred CCeEEEEEccCCCChHHHHHHHH
Q psy11993 410 RPFVMAFCGVNGVGKSTNLAKIC 432 (630)
Q Consensus 410 ~p~vi~lvGpNGvGKTTllakLA 432 (630)
+...|+|+|+.||||||++..++
T Consensus 28 ~~~ki~v~G~~~vGKSsLi~~l~ 50 (192)
T 2b6h_A 28 KQMRILMVGLDAAGKTTILYKLK 50 (192)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHC
T ss_pred CccEEEEECCCCCCHHHHHHHHH
Confidence 34789999999999999999875
No 370
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=96.72 E-value=0.0062 Score=57.34 Aligned_cols=94 Identities=14% Similarity=0.097 Sum_probs=49.1
Q ss_pred CCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcccCCc
Q psy11993 507 IDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTI 586 (630)
Q Consensus 507 ~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK~D~~ 586 (630)
+.+.++||+|....+. + .... ...+.+++|-+.+.. +..+.+..+...+..+.........-.+|.||.|..
T Consensus 69 ~~l~i~Dt~G~~~~~~-~-~~~~-----~~~~~~ilv~d~~~~-~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~ 140 (187)
T 3c5c_A 69 VHLRVMDTADLDTPRN-C-ERYL-----NWAHAFLVVYSVDSR-QSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMA 140 (187)
T ss_dssp EEEEEEECCC---CCC-T-HHHH-----TTCSEEEEEEETTCH-HHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGG
T ss_pred EEEEEEECCCCCcchh-H-HHHH-----hhCCEEEEEEECCCH-HHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchh
Confidence 4566899999754332 2 1122 345677777776532 334444444444433321000123457889999964
Q ss_pred Cc---cHHHHHHHHHHhCCcEEEEe
Q psy11993 587 DD---KVGAAISMTYITGQPIVFVG 608 (630)
Q Consensus 587 ~~---~~G~~ls~~~~~g~PI~fvg 608 (630)
+. ..-.+..++...+.|+..++
T Consensus 141 ~~~~v~~~~~~~~~~~~~~~~~e~S 165 (187)
T 3c5c_A 141 QYRQVTKAEGVALAGRFGCLFFEVS 165 (187)
T ss_dssp GGCSSCHHHHHHHHHHHTCEEEECC
T ss_pred hcCccCHHHHHHHHHHcCCcEEEEe
Confidence 21 22445566777788776655
No 371
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.71 E-value=0.0013 Score=62.83 Aligned_cols=37 Identities=32% Similarity=0.291 Sum_probs=32.7
Q ss_pred eEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecc
Q psy11993 412 FVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACD 448 (630)
Q Consensus 412 ~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~D 448 (630)
..+.|.||+|+||||++..|+..+...+.++.++.+.
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~ 91 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVP 91 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhH
Confidence 6789999999999999999999988878888877654
No 372
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.71 E-value=0.00078 Score=62.71 Aligned_cols=36 Identities=22% Similarity=0.174 Sum_probs=26.9
Q ss_pred CeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccC
Q psy11993 411 PFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTF 450 (630)
Q Consensus 411 p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~ 450 (630)
|.+|+|+|++||||||+++.|+.. .....++..|.+
T Consensus 2 ~~~I~i~G~~GsGKST~a~~L~~~----~~~~~~i~~d~~ 37 (181)
T 1ly1_A 2 KKIILTIGCPGSGKSTWAREFIAK----NPGFYNINRDDY 37 (181)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH----STTEEEECHHHH
T ss_pred CeEEEEecCCCCCHHHHHHHHHhh----cCCcEEecHHHH
Confidence 478999999999999999999873 122444455654
No 373
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=96.69 E-value=0.0092 Score=56.40 Aligned_cols=96 Identities=18% Similarity=0.125 Sum_probs=51.3
Q ss_pred CCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCccHHHHHH-HHHHHHhhcccCCCCCCeeEEEEcccCC
Q psy11993 507 IDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQLV-KFNNAMADHSLSDNPHLIDGIVLTKFDT 585 (630)
Q Consensus 507 ~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~Dav~ql~-~f~~~l~~~~~~~~~~~i~gIIlTK~D~ 585 (630)
+.+.++||+|....+. +... ...+.+.+++|.+.+... ....+. .+...+..+.. .....+|.||.|.
T Consensus 68 ~~~~i~Dt~G~~~~~~-~~~~-----~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~----~~p~ilv~nK~Dl 136 (201)
T 2q3h_A 68 VRLQLCDTAGQDEFDK-LRPL-----CYTNTDIFLLCFSVVSPS-SFQNVSEKWVPEIRCHCP----KAPIILVGTQSDL 136 (201)
T ss_dssp EEEEEEECCCSTTCSS-SGGG-----GGTTCSEEEEEEETTCHH-HHHHHHHTHHHHHHHHCS----SSCEEEEEECGGG
T ss_pred EEEEEEECCCCHHHHH-HhHh-----hcCCCcEEEEEEECCCHH-HHHHHHHHHHHHHHHhCC----CCCEEEEEECHhh
Confidence 3456899999754321 1111 124567888888876442 333332 34444443321 2345788999997
Q ss_pred cCc---------------cHHHHHHHHHHhCC-cEEEEe--cCCCC
Q psy11993 586 IDD---------------KVGAAISMTYITGQ-PIVFVG--TGQTY 613 (630)
Q Consensus 586 ~~~---------------~~G~~ls~~~~~g~-PI~fvg--~Gq~v 613 (630)
... ..-.+..++...+. |+..++ +|+.+
T Consensus 137 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi 182 (201)
T 2q3h_A 137 REDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSALTQKNL 182 (201)
T ss_dssp GGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECCTTTCTTH
T ss_pred hhchhhhhhhcccccccCCHHHHHHHHHhcCCcEEEEEecCCCCCH
Confidence 521 12234555666676 666554 34443
No 374
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=96.68 E-value=0.0015 Score=61.44 Aligned_cols=24 Identities=21% Similarity=0.214 Sum_probs=20.8
Q ss_pred CeEEEEEccCCCChHHHHHHHHHH
Q psy11993 411 PFVMAFCGVNGVGKSTNLAKICFW 434 (630)
Q Consensus 411 p~vi~lvGpNGvGKTTllakLA~~ 434 (630)
...|+|+|+.||||||++..|++.
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~ 44 (190)
T 2h57_A 21 EVHVLCLGLDNSGKTTIINKLKPS 44 (190)
T ss_dssp CEEEEEEECTTSSHHHHHHHTSCG
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 368999999999999999988643
No 375
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.68 E-value=0.00094 Score=64.94 Aligned_cols=24 Identities=29% Similarity=0.277 Sum_probs=22.6
Q ss_pred eEEEEEccCCCChHHHHHHHHHHH
Q psy11993 412 FVMAFCGVNGVGKSTNLAKICFWL 435 (630)
Q Consensus 412 ~vi~lvGpNGvGKTTllakLA~~l 435 (630)
.+|+|+||+||||||+++.|+..+
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 689999999999999999999876
No 376
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=96.67 E-value=0.0026 Score=59.34 Aligned_cols=23 Identities=22% Similarity=0.401 Sum_probs=20.7
Q ss_pred CeEEEEEccCCCChHHHHHHHHH
Q psy11993 411 PFVMAFCGVNGVGKSTNLAKICF 433 (630)
Q Consensus 411 p~vi~lvGpNGvGKTTllakLA~ 433 (630)
...|+|+|+.||||||++..|.+
T Consensus 21 ~~~i~v~G~~~~GKSsli~~l~~ 43 (181)
T 2h17_A 21 EHKVIIVGLDNAGKTTILYQFSM 43 (181)
T ss_dssp CEEEEEEEETTSSHHHHHHHHHT
T ss_pred eeEEEEECCCCCCHHHHHHHHhc
Confidence 36899999999999999999875
No 377
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=96.66 E-value=0.0084 Score=58.10 Aligned_cols=97 Identities=11% Similarity=0.066 Sum_probs=50.5
Q ss_pred CCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcccCCc
Q psy11993 507 IDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTI 586 (630)
Q Consensus 507 ~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK~D~~ 586 (630)
+.+.++||+|...... +... .....+.+++|.+.+... ....+..+...+..+.. ....-.+|+||.|..
T Consensus 62 ~~~~i~Dt~G~~~~~~-~~~~-----~~~~~d~vilV~D~~~~~-s~~~~~~~l~~i~~~~~---~~~piilv~nK~Dl~ 131 (223)
T 3cpj_B 62 IKAQIWDTAGQERYRA-ITSA-----YYRGAVGALIVYDISKSS-SYENCNHWLSELRENAD---DNVAVGLIGNKSDLA 131 (223)
T ss_dssp EEEEEECCTTTTTTTC-CCGG-----GTTTCCEEEEEEC-CCHH-HHHHHHHHHHHHHHHCC-----CEEEEEECCGGGG
T ss_pred EEEEEEECCCccchhh-hHHH-----HhccCCEEEEEEeCCCHH-HHHHHHHHHHHHHHhCC---CCCeEEEEEECcccc
Confidence 4567899999653211 1111 113567788888876543 33334444444443321 123456888999974
Q ss_pred Cc---cHHHHHHHHHHhCCcEEEEe--cCCCC
Q psy11993 587 DD---KVGAAISMTYITGQPIVFVG--TGQTY 613 (630)
Q Consensus 587 ~~---~~G~~ls~~~~~g~PI~fvg--~Gq~v 613 (630)
.. ..-.+..++...+.|+..++ +|+.+
T Consensus 132 ~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi 163 (223)
T 3cpj_B 132 HLRAVPTEESKTFAQENQLLFTETSALNSENV 163 (223)
T ss_dssp GGCCSCHHHHHHHHHHTTCEEEECCCC-CCCH
T ss_pred cccccCHHHHHHHHHHcCCEEEEEeCCCCCCH
Confidence 21 12344556666777776654 44443
No 378
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.66 E-value=0.0056 Score=60.51 Aligned_cols=39 Identities=26% Similarity=0.259 Sum_probs=31.3
Q ss_pred CCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCc
Q psy11993 410 RPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRA 452 (630)
Q Consensus 410 ~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ 452 (630)
+|.+|.|+||+||||+|.+.+|+..+ +-+.|-+.|.+|.
T Consensus 28 k~kiI~llGpPGsGKgTqa~~L~~~~----g~~hIstGdllR~ 66 (217)
T 3umf_A 28 KAKVIFVLGGPGSGKGTQCEKLVQKF----HFNHLSSGDLLRA 66 (217)
T ss_dssp SCEEEEEECCTTCCHHHHHHHHHHHH----CCEEECHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH----CCceEcHHHHHHH
Confidence 46899999999999999999999776 3455666676663
No 379
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.66 E-value=0.00062 Score=65.52 Aligned_cols=36 Identities=28% Similarity=0.293 Sum_probs=30.9
Q ss_pred EEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecc
Q psy11993 413 VMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACD 448 (630)
Q Consensus 413 vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~D 448 (630)
+|+|+|++||||||++..|+..+...+.+|.+...+
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~~g~~v~~~~~~ 37 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRAAGRSVATLAFP 37 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHEEEEEEEEEESS
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeec
Confidence 789999999999999999999998777777765443
No 380
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=96.65 E-value=0.043 Score=68.69 Aligned_cols=94 Identities=13% Similarity=0.122 Sum_probs=58.8
Q ss_pred hccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccCCCcCCcchhhhHhhhc
Q psy11993 406 KKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHPAAKHGGREMVQLFEK 485 (630)
Q Consensus 406 i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~~~~~tv~env~l~~~ 485 (630)
+.+| .++.|.||+|+||||++..+|..+...+++|++++..-- .+|++ +..++... +++.+..
T Consensus 729 l~~G--~lVlI~G~PG~GKTtLal~lA~~aa~~g~~VlyiS~Ees----~~ql~--A~~lGvd~--------~~L~i~~- 791 (1706)
T 3cmw_A 729 LPMG--RIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHA----LDPIY--ARKLGVDI--------DNLLCSQ- 791 (1706)
T ss_dssp EETT--SEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSC----CCHHH--HHHTTCCG--------GGCEEEC-
T ss_pred cCCC--ceEEEECCCCCCcHHHHHHHHHHHHHcCCCeEEEeccch----HHHHH--HHHcCCCh--------hheEEec-
Confidence 4456 899999999999999999999988888889999886642 22443 44454321 1221111
Q ss_pred cCCCCHHHHHHHHHHHhhhcCCCeeeeccccch
Q psy11993 486 GYGKDPAEIAFRAISHARDMHIDVVLIDTAGRM 518 (630)
Q Consensus 486 ~~~~d~~~ia~~ai~~a~~~~~D~vlIDTaGr~ 518 (630)
..+...+...+-......++++|+||.-..+
T Consensus 792 --~~~leei~~~l~~lv~~~~~~lVVIDsLq~l 822 (1706)
T 3cmw_A 792 --PDTGEQALEICDALARSGAVDVIVVDSVAAL 822 (1706)
T ss_dssp --CSSHHHHHHHHHHHHHHTCCSEEEESCSTTC
T ss_pred --CCcHHHHHHHHHHHHHccCCCEEEEechhhh
Confidence 1122222222222334567899999974433
No 381
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=96.64 E-value=0.005 Score=62.33 Aligned_cols=23 Identities=26% Similarity=0.212 Sum_probs=20.8
Q ss_pred eEEEEEccCCCChHHHHHHHHHH
Q psy11993 412 FVMAFCGVNGVGKSTNLAKICFW 434 (630)
Q Consensus 412 ~vi~lvGpNGvGKTTllakLA~~ 434 (630)
..|+|+|.+||||||++..|.+.
T Consensus 27 ~~i~vvG~~~~GKSSLln~l~g~ 49 (299)
T 2aka_B 27 PQIAVVGGQSAGKSSVLENFVGR 49 (299)
T ss_dssp CEEEEEEBTTSCHHHHHHHHHTS
T ss_pred CeEEEEeCCCCCHHHHHHHHHCC
Confidence 47999999999999999999864
No 382
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.64 E-value=0.0016 Score=61.24 Aligned_cols=36 Identities=36% Similarity=0.347 Sum_probs=30.2
Q ss_pred eEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeec
Q psy11993 412 FVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAAC 447 (630)
Q Consensus 412 ~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~ 447 (630)
.+|+|+|+.||||||++..|+..+...+..+.+...
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~ 37 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINY 37 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEEC
Confidence 478999999999999999999988766666766643
No 383
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=96.63 E-value=0.0014 Score=71.04 Aligned_cols=73 Identities=21% Similarity=0.368 Sum_probs=36.3
Q ss_pred CCCeeeeccccchhchHHHHHHHHhh--hhhcCCCeEEEEeccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEccc
Q psy11993 506 HIDVVLIDTAGRMQDNEPLMRALAKL--VKVNQPDLLLFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKF 583 (630)
Q Consensus 506 ~~D~vlIDTaGr~~~~~~L~~aL~kl--~~~~~Pd~VLlV~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK~ 583 (630)
+..+.++||+|.......+...+... ......|.+++|.|+..+....+. .+.+.++. ......+++||+
T Consensus 50 ~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~vvD~~~~~~~~d~--~~~~~l~~------~~~pvilv~NK~ 121 (436)
T 2hjg_A 50 NYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGREGVTAADE--EVAKILYR------TKKPVVLAVNKL 121 (436)
T ss_dssp SSCCEEEC---------CHHHHHHHHHHHHHHHCSEEEEEEETTTCSCHHHH--HHHHHHTT------CCSCEEEEEECC
T ss_pred CceEEEEECCCCCCcchhHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHH--HHHHHHHH------cCCCEEEEEECc
Confidence 35678999999753221121111111 112357889999999888765442 33333432 123457899999
Q ss_pred CCc
Q psy11993 584 DTI 586 (630)
Q Consensus 584 D~~ 586 (630)
|..
T Consensus 122 D~~ 124 (436)
T 2hjg_A 122 DNT 124 (436)
T ss_dssp CC-
T ss_pred cCc
Confidence 975
No 384
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.63 E-value=0.014 Score=61.27 Aligned_cols=36 Identities=11% Similarity=-0.062 Sum_probs=29.1
Q ss_pred ccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeec
Q psy11993 407 KQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAAC 447 (630)
Q Consensus 407 ~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~ 447 (630)
.+| .++.|.||+|+||||++..+|.. .+++|++++.
T Consensus 121 ~~g--sviLI~GpPGsGKTtLAlqlA~~---~G~~VlyIs~ 156 (331)
T 2vhj_A 121 YAS--GMVIVTGKGNSGKTPLVHALGEA---LGGKDKYATV 156 (331)
T ss_dssp EES--EEEEEECSCSSSHHHHHHHHHHH---HHTTSCCEEE
T ss_pred CCC--cEEEEEcCCCCCHHHHHHHHHHh---CCCCEEEEEe
Confidence 455 68899999999999999999876 4567666665
No 385
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.63 E-value=0.014 Score=60.72 Aligned_cols=42 Identities=14% Similarity=0.162 Sum_probs=31.9
Q ss_pred CCCeEEEEEccCCCChHHHHHHHHHHHHhc------CCeEEEeecccC
Q psy11993 409 GRPFVMAFCGVNGVGKSTNLAKICFWLIEN------NLNVLIAACDTF 450 (630)
Q Consensus 409 g~p~vi~lvGpNGvGKTTllakLA~~l~~~------ggkVlI~~~Dt~ 450 (630)
+.+..+.|.||+|+||||++..++..+... +..+..+.|...
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 89 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHR 89 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTS
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcC
Confidence 344789999999999999999999887554 445555565543
No 386
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=96.63 E-value=0.0039 Score=67.68 Aligned_cols=70 Identities=20% Similarity=0.329 Sum_probs=39.5
Q ss_pred Ceeeeccccchhch----HHHHHHHHhhhhhcCCCeEEEEeccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEccc
Q psy11993 508 DVVLIDTAGRMQDN----EPLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKF 583 (630)
Q Consensus 508 D~vlIDTaGr~~~~----~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK~ 583 (630)
.+.++||+|..... ...++.+.. ......|.+|+|.|+..+....+. .+.+.++... ....+++||+
T Consensus 50 ~~~l~DT~G~~~~~~~~~~~~~~~~~~-~~~~~ad~il~V~D~~~~~~~~d~--~i~~~l~~~~------~p~ilv~NK~ 120 (439)
T 1mky_A 50 TFKLVDTCGVFDNPQDIISQKMKEVTL-NMIREADLVLFVVDGKRGITKEDE--SLADFLRKST------VDTILVANKA 120 (439)
T ss_dssp EEEEEECTTTTSSGGGCCCHHHHHHHH-HHHTTCSEEEEEEETTTCCCHHHH--HHHHHHHHHT------CCEEEEEESC
T ss_pred EEEEEECCCccccccchHHHHHHHHHH-HHHHhCCEEEEEEECCCCCCHHHH--HHHHHHHHcC------CCEEEEEeCC
Confidence 46789999965311 111222211 122467899999998887655442 2223332211 2346899999
Q ss_pred CCc
Q psy11993 584 DTI 586 (630)
Q Consensus 584 D~~ 586 (630)
|..
T Consensus 121 D~~ 123 (439)
T 1mky_A 121 ENL 123 (439)
T ss_dssp CSH
T ss_pred CCc
Confidence 974
No 387
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=96.62 E-value=0.0092 Score=64.68 Aligned_cols=97 Identities=13% Similarity=0.092 Sum_probs=53.5
Q ss_pred CCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcccCCc
Q psy11993 507 IDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTI 586 (630)
Q Consensus 507 ~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK~D~~ 586 (630)
..+.++||||.........+.+ ...|.+++|.++..|... |.......+..+ ....-.+++||+|..
T Consensus 104 ~~~~iiDtpGh~~f~~~~~~~~------~~aD~~ilVvDa~~g~~~--qt~~~l~~~~~~-----~~~~iIvviNK~Dl~ 170 (434)
T 1zun_B 104 RKFIIADTPGHEQYTRNMATGA------STCDLAIILVDARYGVQT--QTRRHSYIASLL-----GIKHIVVAINKMDLN 170 (434)
T ss_dssp EEEEEEECCCSGGGHHHHHHHH------TTCSEEEEEEETTTCSCH--HHHHHHHHHHHT-----TCCEEEEEEECTTTT
T ss_pred ceEEEEECCChHHHHHHHHHHH------hhCCEEEEEEECCCCCcH--HHHHHHHHHHHc-----CCCeEEEEEEcCcCC
Confidence 4577999999765433333222 467889999999877532 222222222211 112246789999986
Q ss_pred Ccc---H----HHHHHHHHHhC-----CcEEEEe--cCCCCccC
Q psy11993 587 DDK---V----GAAISMTYITG-----QPIVFVG--TGQTYTDL 616 (630)
Q Consensus 587 ~~~---~----G~~ls~~~~~g-----~PI~fvg--~Gq~v~DL 616 (630)
+.. + ..+..++...+ .|+..++ +|+.+.++
T Consensus 171 ~~~~~~~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~ 214 (434)
T 1zun_B 171 GFDERVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNK 214 (434)
T ss_dssp TSCHHHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSC
T ss_pred cccHHHHHHHHHHHHHHHHHhCCCccCceEEEEeccCCCCcccc
Confidence 311 1 11223334455 4666655 67777654
No 388
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=96.59 E-value=0.0011 Score=68.33 Aligned_cols=41 Identities=17% Similarity=0.234 Sum_probs=32.4
Q ss_pred CeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCC
Q psy11993 411 PFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFR 451 (630)
Q Consensus 411 p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R 451 (630)
+.+|+|.||.||||||+++.|+..+...+.++.++++|-|-
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~~ 45 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFH 45 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGB
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchhh
Confidence 47999999999999999999998876666778888888754
No 389
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.59 E-value=0.0038 Score=65.33 Aligned_cols=89 Identities=13% Similarity=0.100 Sum_probs=52.9
Q ss_pred EEEEEccCCCChHHHHHHHHHHHHhc--CCeEEEeecc-cCCccHHHHHHHHHhhhcccCCCcCCcchhhhHhhhccCCC
Q psy11993 413 VMAFCGVNGVGKSTNLAKICFWLIEN--NLNVLIAACD-TFRAGAVEQLRTHVRHLCSLHPAAKHGGREMVQLFEKGYGK 489 (630)
Q Consensus 413 vi~lvGpNGvGKTTllakLA~~l~~~--ggkVlI~~~D-t~R~ga~eQLr~~~~~l~~~~~~~~~tv~env~l~~~~~~~ 489 (630)
++.|.||+|+||||++..++...... +++|++++.. .++ +. ++..++... +++.+.. ..
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~-----~~--ra~~lGvd~--------d~llv~~---~~ 91 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGIT-----PA--YLRSMGVDP--------ERVIHTP---VQ 91 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCC-----HH--HHHHTTCCG--------GGEEEEE---CS
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhh-----HH--HHHHhCCCH--------HHeEEEc---CC
Confidence 78999999999999999988766554 6788887654 333 21 355565422 1222221 11
Q ss_pred CHHHHHHHHHHH---hhhcCCCeeeeccccchh
Q psy11993 490 DPAEIAFRAISH---ARDMHIDVVLIDTAGRMQ 519 (630)
Q Consensus 490 d~~~ia~~ai~~---a~~~~~D~vlIDTaGr~~ 519 (630)
+...+...+++. ++...+++++||....+.
T Consensus 92 ~~E~~~l~i~~~l~~i~~~~~~lvVIDSI~aL~ 124 (333)
T 3io5_A 92 SLEQLRIDMVNQLDAIERGEKVVVFIDSLGNLA 124 (333)
T ss_dssp BHHHHHHHHHHHHHTCCTTCCEEEEEECSTTCB
T ss_pred CHHHHHHHHHHHHHHhhccCceEEEEecccccc
Confidence 222221223332 345568999999866554
No 390
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.59 E-value=0.0014 Score=61.55 Aligned_cols=35 Identities=26% Similarity=0.269 Sum_probs=27.8
Q ss_pred eEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEee
Q psy11993 412 FVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAA 446 (630)
Q Consensus 412 ~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~ 446 (630)
.+|+|+|++||||||+++.|+..+...+..+.++.
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~i~ 38 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVS 38 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCcceEEEe
Confidence 68999999999999999999998865543333444
No 391
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=96.59 E-value=0.0026 Score=59.41 Aligned_cols=23 Identities=26% Similarity=0.351 Sum_probs=20.5
Q ss_pred CeEEEEEccCCCChHHHHHHHHH
Q psy11993 411 PFVMAFCGVNGVGKSTNLAKICF 433 (630)
Q Consensus 411 p~vi~lvGpNGvGKTTllakLA~ 433 (630)
+..|+|+|+.||||||++..+.+
T Consensus 18 ~~~i~v~G~~~~GKssl~~~l~~ 40 (186)
T 1ksh_A 18 ELRLLMLGLDNAGKTTILKKFNG 40 (186)
T ss_dssp CEEEEEECSTTSSHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhc
Confidence 47899999999999999998874
No 392
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=96.58 E-value=0.027 Score=53.44 Aligned_cols=94 Identities=11% Similarity=-0.041 Sum_probs=49.2
Q ss_pred CCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcccCCc
Q psy11993 507 IDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTI 586 (630)
Q Consensus 507 ~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK~D~~ 586 (630)
+.+.+.||+|.......+..... ...+.+++|-+.+.. +....+..+...+..+... ....-.+|.||.|..
T Consensus 72 ~~l~i~Dt~g~~~~~~~~~~~~~-----~~~d~~ilv~d~~~~-~s~~~~~~~~~~i~~~~~~--~~~piilv~nK~Dl~ 143 (195)
T 3cbq_A 72 VTLVVYDIWEQGDAGGWLRDHCL-----QTGDAFLIVFSVTDR-RSFSKVPETLLRLRAGRPH--HDLPVILVGNKSDLA 143 (195)
T ss_dssp EEEEEECCCCCSGGGHHHHHHHH-----HHCSEEEEEEETTCH-HHHHTHHHHHHHHHHHSTT--SCCCEEEEEECTTCT
T ss_pred EEEEEEecCCCccchhhhHHHhh-----ccCCEEEEEEECCCH-HHHHHHHHHHHHHHHhcCC--CCCCEEEEeechhcc
Confidence 34568899987544332333222 245677777776532 2333333333333332210 112446888999975
Q ss_pred Cc---cHHHHHHHHHHhCCcEEEEe
Q psy11993 587 DD---KVGAAISMTYITGQPIVFVG 608 (630)
Q Consensus 587 ~~---~~G~~ls~~~~~g~PI~fvg 608 (630)
+. ..-.+..++...+.|+..++
T Consensus 144 ~~~~v~~~~~~~~a~~~~~~~~e~S 168 (195)
T 3cbq_A 144 RSREVSLEEGRHLAGTLSCKHIETS 168 (195)
T ss_dssp TTCCSCHHHHHHHHHHTTCEEEEEB
T ss_pred ccCCcCHHHHHHHHHHhCCEEEEEc
Confidence 22 12344455666677766665
No 393
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=96.58 E-value=0.0014 Score=63.02 Aligned_cols=99 Identities=9% Similarity=0.012 Sum_probs=52.7
Q ss_pred CCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcccCCc
Q psy11993 507 IDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTI 586 (630)
Q Consensus 507 ~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK~D~~ 586 (630)
+.+.++||+|..... .+..... ...+.+++|.+.+.+. ....+..+...+..+.. ......+|+||+|..
T Consensus 61 ~~~~l~Dt~G~~~~~-~~~~~~~-----~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~ 130 (218)
T 4djt_A 61 IKFNVWDTAGQEKKA-VLKDVYY-----IGASGAILFFDVTSRI-TCQNLARWVKEFQAVVG---NEAPIVVCANKIDIK 130 (218)
T ss_dssp EEEEEEEECSGGGTS-CCCHHHH-----TTCSEEEEEEETTCHH-HHHTHHHHHHHHHHHHC---SSSCEEEEEECTTCC
T ss_pred EEEEEEecCCchhhc-hHHHHHh-----hcCCEEEEEEeCCCHH-HHHHHHHHHHHHHHhcC---CCCCEEEEEECCCCc
Confidence 457799999965432 1112222 4567888888887553 22333333333433322 113457889999975
Q ss_pred Cc---cHHHHHHHHHHhCCcEEEEec--CCCCcc
Q psy11993 587 DD---KVGAAISMTYITGQPIVFVGT--GQTYTD 615 (630)
Q Consensus 587 ~~---~~G~~ls~~~~~g~PI~fvg~--Gq~v~D 615 (630)
+. ..-.+...+...+.|+..++. |+++.+
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~ 164 (218)
T 4djt_A 131 NRQKISKKLVMEVLKGKNYEYFEISAKTAHNFGL 164 (218)
T ss_dssp ----CCHHHHHHHTTTCCCEEEEEBTTTTBTTTH
T ss_pred cccccCHHHHHHHHHHcCCcEEEEecCCCCCHHH
Confidence 32 112233444456778777763 555443
No 394
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=96.58 E-value=0.023 Score=60.83 Aligned_cols=69 Identities=17% Similarity=0.007 Sum_probs=40.1
Q ss_pred CCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcccCCc
Q psy11993 507 IDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTI 586 (630)
Q Consensus 507 ~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK~D~~ 586 (630)
..+.++||||...........+ ...|.+++|.++..+.. ..|.......+..+. ...-.+++||+|..
T Consensus 75 ~~~~iiDtPGh~~~~~~~~~~~------~~~D~~ilVvda~~~~~-~~qt~~~~~~~~~~~-----~~~iivviNK~Dl~ 142 (403)
T 3sjy_A 75 RRISFIDAPGHEVLMATMLSGA------ALMDGAILVVAANEPFP-QPQTREHFVALGIIG-----VKNLIIVQNKVDVV 142 (403)
T ss_dssp EEEEEEECCCCGGGHHHHHHHH------TTCSEEEEEEETTSCSS-CHHHHHHHHHHHHHT-----CCCEEEEEECGGGS
T ss_pred ceEEEEECCCcHHHHHHHHHHH------hhCCEEEEEEECCCCCC-cHHHHHHHHHHHHcC-----CCCEEEEEECcccc
Confidence 3567999999655433333333 35788999999887641 123333322332221 11346889999986
Q ss_pred C
Q psy11993 587 D 587 (630)
Q Consensus 587 ~ 587 (630)
+
T Consensus 143 ~ 143 (403)
T 3sjy_A 143 S 143 (403)
T ss_dssp C
T ss_pred c
Confidence 3
No 395
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=96.56 E-value=0.00061 Score=64.82 Aligned_cols=25 Identities=32% Similarity=0.424 Sum_probs=22.4
Q ss_pred eEEEEEccCCCChHHHHHHHHHHHH
Q psy11993 412 FVMAFCGVNGVGKSTNLAKICFWLI 436 (630)
Q Consensus 412 ~vi~lvGpNGvGKTTllakLA~~l~ 436 (630)
..++|+|+|||||||++..|++...
T Consensus 30 ~kv~lvG~~g~GKSTLl~~l~~~~~ 54 (191)
T 1oix_A 30 FKVVLIGDSGVGKSNLLSRFTRNEF 54 (191)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSCC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCCC
Confidence 5799999999999999999998654
No 396
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=96.56 E-value=0.0032 Score=62.78 Aligned_cols=42 Identities=14% Similarity=0.258 Sum_probs=37.2
Q ss_pred eEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCcc
Q psy11993 412 FVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAG 453 (630)
Q Consensus 412 ~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~g 453 (630)
-.|.+.|+.||||||++..+|..+...|.+|+++.+|+....
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~D~q~~~ 48 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVVETHGRA 48 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCTTCH
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEeCCCCCh
Confidence 358888999999999999999999999999999999996443
No 397
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=96.54 E-value=0.0015 Score=60.39 Aligned_cols=25 Identities=36% Similarity=0.329 Sum_probs=22.6
Q ss_pred eEEEEEccCCCChHHHHHHHHHHHH
Q psy11993 412 FVMAFCGVNGVGKSTNLAKICFWLI 436 (630)
Q Consensus 412 ~vi~lvGpNGvGKTTllakLA~~l~ 436 (630)
.+.+|+||||+||||++..|+..+.
T Consensus 24 g~~~I~G~NGsGKStil~Ai~~~l~ 48 (149)
T 1f2t_A 24 GINLIIGQNGSGKSSLLDAILVGLY 48 (149)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHc
Confidence 5999999999999999999997663
No 398
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=96.54 E-value=0.0037 Score=69.75 Aligned_cols=86 Identities=20% Similarity=0.098 Sum_probs=50.8
Q ss_pred CCCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcccCC
Q psy11993 506 HIDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDT 585 (630)
Q Consensus 506 ~~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK~D~ 585 (630)
++.+.++||||.........+.+. ..|.+++|.++..|..... ...+ ..+..+ .....+++||+|.
T Consensus 81 ~~~i~liDTPG~~df~~~~~~~l~------~aD~allVvDa~~g~~~~t-~~~~-~~~~~~------~iPiivviNK~Dl 146 (528)
T 3tr5_A 81 DYLINLLDTPGHADFTEDTYRTLT------AVDSALMVIDAAKGVEPRT-IKLM-EVCRLR------HTPIMTFINKMDR 146 (528)
T ss_dssp TEEEEEECCCCSTTCCHHHHHGGG------GCSEEEEEEETTTCSCHHH-HHHH-HHHHTT------TCCEEEEEECTTS
T ss_pred CEEEEEEECCCchhHHHHHHHHHH------hCCEEEEEEeCCCCCCHHH-HHHH-HHHHHc------CCCEEEEEeCCCC
Confidence 456779999997665554444433 4678999999988765433 2222 223222 1245788999997
Q ss_pred cCccHHH-HHHHHHHhCCcEE
Q psy11993 586 IDDKVGA-AISMTYITGQPIV 605 (630)
Q Consensus 586 ~~~~~G~-~ls~~~~~g~PI~ 605 (630)
.....-. +-.+....+.++.
T Consensus 147 ~~~~~~~~l~ei~~~l~~~~~ 167 (528)
T 3tr5_A 147 DTRPSIELLDEIESILRIHCA 167 (528)
T ss_dssp CCSCHHHHHHHHHHHHCCEEE
T ss_pred ccccHHHHHHHHHHhhCCCce
Confidence 5333333 3344555666443
No 399
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.53 E-value=0.0035 Score=57.91 Aligned_cols=27 Identities=22% Similarity=0.287 Sum_probs=24.0
Q ss_pred CeEEEEEccCCCChHHHHHHHHHHHHh
Q psy11993 411 PFVMAFCGVNGVGKSTNLAKICFWLIE 437 (630)
Q Consensus 411 p~vi~lvGpNGvGKTTllakLA~~l~~ 437 (630)
+..+.|+||.|+||||++..++..+..
T Consensus 43 ~~~~ll~G~~G~GKT~l~~~~~~~~~~ 69 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVEGLAQRIIN 69 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 467899999999999999999988765
No 400
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.53 E-value=0.0019 Score=64.52 Aligned_cols=43 Identities=35% Similarity=0.510 Sum_probs=33.4
Q ss_pred cCCCeEEEEEccCCCChHHHHHHHHHHHHh-----cCCeEEEeecccC
Q psy11993 408 QGRPFVMAFCGVNGVGKSTNLAKICFWLIE-----NNLNVLIAACDTF 450 (630)
Q Consensus 408 ~g~p~vi~lvGpNGvGKTTllakLA~~l~~-----~ggkVlI~~~Dt~ 450 (630)
.++|.+|+|+|+.||||||++..|+..+.. .+.++.++++|-|
T Consensus 19 ~~~~~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~ 66 (252)
T 1uj2_A 19 GGEPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSF 66 (252)
T ss_dssp --CCEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGG
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCcc
Confidence 346789999999999999999999986643 2457778877764
No 401
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=96.53 E-value=0.0091 Score=62.82 Aligned_cols=23 Identities=26% Similarity=0.212 Sum_probs=20.7
Q ss_pred eEEEEEccCCCChHHHHHHHHHH
Q psy11993 412 FVMAFCGVNGVGKSTNLAKICFW 434 (630)
Q Consensus 412 ~vi~lvGpNGvGKTTllakLA~~ 434 (630)
..|+|||.+||||||++..|.+.
T Consensus 32 ~~I~vvG~~~~GKSSLln~L~g~ 54 (353)
T 2x2e_A 32 PQIAVVGGQSAGKSSVLENFVGR 54 (353)
T ss_dssp CEEEEECBTTSSHHHHHHTTTTS
T ss_pred CeEEEECCCCCCHHHHHHHHhCC
Confidence 47999999999999999999863
No 402
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=96.52 E-value=0.0037 Score=67.11 Aligned_cols=28 Identities=21% Similarity=0.195 Sum_probs=24.0
Q ss_pred eEEEEEccCCCChHHHHHHHHHHHHhcC
Q psy11993 412 FVMAFCGVNGVGKSTNLAKICFWLIENN 439 (630)
Q Consensus 412 ~vi~lvGpNGvGKTTllakLA~~l~~~g 439 (630)
..|+++|..|+||||++..|.+.....+
T Consensus 12 ~~I~iiG~~~~GKSTLi~~L~~~~~~~g 39 (405)
T 2c78_A 12 VNVGTIGHVDHGKTTLTAALTYVAAAEN 39 (405)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHSC
T ss_pred EEEEEEcCCCCCHHHHHHHHHhhhhhcC
Confidence 5799999999999999999998765543
No 403
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=96.50 E-value=0.0084 Score=69.08 Aligned_cols=83 Identities=18% Similarity=0.159 Sum_probs=49.7
Q ss_pred CCCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcccCC
Q psy11993 506 HIDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDT 585 (630)
Q Consensus 506 ~~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK~D~ 585 (630)
++.+.++||+|.........+++. ..|.+|+|.++..+...... ..+.. +..+ .....+++||+|.
T Consensus 74 ~~~i~liDTPG~~df~~~~~~~l~------~aD~~llVvDa~~g~~~~~~-~~~~~-~~~~------~~p~ilviNK~Dl 139 (693)
T 2xex_A 74 GHRVNIIDTPGHVDFTVEVERSLR------VLDGAVTVLDAQSGVEPQTE-TVWRQ-ATTY------GVPRIVFVNKMDK 139 (693)
T ss_dssp TEEEEEECCCCCSSCCHHHHHHHH------HCSEEEEEEETTTBSCHHHH-HHHHH-HHHT------TCCEEEEEECTTS
T ss_pred CeeEEEEECcCCcchHHHHHHHHH------HCCEEEEEECCCCCCcHHHH-HHHHH-HHHc------CCCEEEEEECCCc
Confidence 456789999998765555555554 35788999999877654322 22322 3222 1345788999998
Q ss_pred cCccHHHHHH-HHHHhCC
Q psy11993 586 IDDKVGAAIS-MTYITGQ 602 (630)
Q Consensus 586 ~~~~~G~~ls-~~~~~g~ 602 (630)
.....-.++. +....+.
T Consensus 140 ~~~~~~~~~~~l~~~l~~ 157 (693)
T 2xex_A 140 LGANFEYSVSTLHDRLQA 157 (693)
T ss_dssp TTCCHHHHHHHHHHHHCC
T ss_pred cccchHHHHHHHHHHhCC
Confidence 6444443443 3333444
No 404
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.50 E-value=0.0012 Score=63.31 Aligned_cols=22 Identities=27% Similarity=0.181 Sum_probs=20.7
Q ss_pred eEEEEEccCCCChHHHHHHHHH
Q psy11993 412 FVMAFCGVNGVGKSTNLAKICF 433 (630)
Q Consensus 412 ~vi~lvGpNGvGKTTllakLA~ 433 (630)
.+|+|+|+|||||||+++.|+.
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 4799999999999999999998
No 405
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.50 E-value=0.0013 Score=63.09 Aligned_cols=22 Identities=23% Similarity=0.324 Sum_probs=20.9
Q ss_pred eEEEEEccCCCChHHHHHHHHH
Q psy11993 412 FVMAFCGVNGVGKSTNLAKICF 433 (630)
Q Consensus 412 ~vi~lvGpNGvGKTTllakLA~ 433 (630)
.+|+|+|++||||||+++.|+.
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999987
No 406
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=96.50 E-value=0.00084 Score=71.43 Aligned_cols=61 Identities=10% Similarity=0.024 Sum_probs=41.5
Q ss_pred cccchhchHHHHHHHHhh--hhh--cCCCeEEEEeccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEccc
Q psy11993 514 TAGRMQDNEPLMRALAKL--VKV--NQPDLLLFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKF 583 (630)
Q Consensus 514 TaGr~~~~~~L~~aL~kl--~~~--~~Pd~VLlV~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK~ 583 (630)
.|||+++...++++|+.+ +.. ..| .+|++|||++++|...+...+ +.+.++ ..+.|+.|+.
T Consensus 266 lS~Gqqq~l~lA~~La~~~l~~~~~~~p-~iLLLDEp~s~LD~~~~~~l~-~~l~~~-------~qt~i~~th~ 330 (359)
T 2o5v_A 266 ASRGEGRTVALALRRAELELLREKFGED-PVLLLDDFTAELDPHRRQYLL-DLAASV-------PQAIVTGTEL 330 (359)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHSSC-CEEEECCGGGCCCHHHHHHHH-HHHHHS-------SEEEEEESSC
T ss_pred CCHHHHHHHHHHHHHHHhhhhhhccCCC-CEEEEeCccccCCHHHHHHHH-HHHHhc-------CcEEEEEEec
Confidence 688999999999888732 211 355 578899999999988765443 344433 1456667773
No 407
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=96.49 E-value=0.0016 Score=73.75 Aligned_cols=47 Identities=19% Similarity=0.137 Sum_probs=38.8
Q ss_pred hhhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcC-CeEEE
Q psy11993 396 VDILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENN-LNVLI 444 (630)
Q Consensus 396 ~~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~g-gkVlI 444 (630)
..+++.+++.+..| ..++|+||||+||||++..|++.+.+.. +.+.+
T Consensus 47 ~~~l~~l~~~i~~g--~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~ 94 (604)
T 3k1j_A 47 EHAVEVIKTAANQK--RHVLLIGEPGTGKSMLGQAMAELLPTETLEDILV 94 (604)
T ss_dssp HHHHHHHHHHHHTT--CCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEE
T ss_pred hhhHhhccccccCC--CEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEE
Confidence 35677788888888 7899999999999999999999987765 44444
No 408
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.46 E-value=0.0012 Score=63.81 Aligned_cols=24 Identities=33% Similarity=0.506 Sum_probs=22.7
Q ss_pred eEEEEEccCCCChHHHHHHHHHHH
Q psy11993 412 FVMAFCGVNGVGKSTNLAKICFWL 435 (630)
Q Consensus 412 ~vi~lvGpNGvGKTTllakLA~~l 435 (630)
.+|+|+||+||||||++..|+..+
T Consensus 13 ~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 13 PPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 799999999999999999999876
No 409
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=95.46 E-value=0.00047 Score=65.88 Aligned_cols=23 Identities=22% Similarity=0.213 Sum_probs=19.8
Q ss_pred CeEEEEEccCCCChHHHHHHHHH
Q psy11993 411 PFVMAFCGVNGVGKSTNLAKICF 433 (630)
Q Consensus 411 p~vi~lvGpNGvGKTTllakLA~ 433 (630)
...|+|+|+.||||||++..+..
T Consensus 30 ~~ki~v~G~~~~GKSsli~~l~~ 52 (204)
T 3th5_A 30 AIKCVVVGDGAVGKTCLLISYTT 52 (204)
Confidence 36799999999999999988753
No 410
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=96.45 E-value=0.022 Score=55.46 Aligned_cols=48 Identities=21% Similarity=0.377 Sum_probs=34.6
Q ss_pred eEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHH
Q psy11993 412 FVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTH 461 (630)
Q Consensus 412 ~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~ 461 (630)
.+|+|=|+-||||||.+..|+.+|. .+.+|.+.-... .....+.++.+
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~L~-~~~~v~~~~eP~-~t~~g~~ir~~ 50 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHRLV-KDYDVIMTREPG-GVPTGEEIRKI 50 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHT-TTSCEEEEESST-TCHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHH-CCCCEEEeeCCC-CChHHHHHHHH
Confidence 6899999999999999999999986 466776654432 22233455544
No 411
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.43 E-value=0.0058 Score=58.55 Aligned_cols=35 Identities=23% Similarity=0.212 Sum_probs=29.8
Q ss_pred CeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEe
Q psy11993 411 PFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIA 445 (630)
Q Consensus 411 p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~ 445 (630)
|.+|+|+|+.||||||++..|+..+...+..|.+.
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l~~~~~~v~~~ 43 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEALCAAGHRAELL 43 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEe
Confidence 47999999999999999999999887767666443
No 412
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=96.41 E-value=0.0029 Score=60.67 Aligned_cols=69 Identities=23% Similarity=0.258 Sum_probs=38.7
Q ss_pred CCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCccHHHHHH-HHHHHHhhcccCCCCCCeeEEEEcccCC
Q psy11993 507 IDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQLV-KFNNAMADHSLSDNPHLIDGIVLTKFDT 585 (630)
Q Consensus 507 ~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~Dav~ql~-~f~~~l~~~~~~~~~~~i~gIIlTK~D~ 585 (630)
+.+.++||+|...... +.. ......+.+++|.+.+.... ...+. .+...+..+. +.....+|+||.|.
T Consensus 78 ~~l~i~Dt~G~~~~~~-----~~~-~~~~~~d~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~----~~~piilv~nK~Dl 146 (204)
T 4gzl_A 78 VNLGLWDTAGLEDYDR-----LRP-LSYPQTDVFLICFSLVSPAS-FENVRAKWYPEVRHHC----PNTPIILVGTKLDL 146 (204)
T ss_dssp EEEEEEEECCSGGGTT-----TGG-GGCTTCSEEEEEEETTCHHH-HHHHHHTHHHHHHHHC----SSCCEEEEEECHHH
T ss_pred EEEEEEECCCchhhHH-----HHH-HHhccCCEEEEEEECCCHHH-HHHHHHHHHHHHHHhC----CCCCEEEEEechhh
Confidence 3455899999754321 111 11235678888888765432 33332 4444554432 12345788999996
Q ss_pred c
Q psy11993 586 I 586 (630)
Q Consensus 586 ~ 586 (630)
.
T Consensus 147 ~ 147 (204)
T 4gzl_A 147 R 147 (204)
T ss_dssp H
T ss_pred c
Confidence 4
No 413
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.40 E-value=0.0058 Score=58.52 Aligned_cols=34 Identities=29% Similarity=0.356 Sum_probs=29.0
Q ss_pred CeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEE
Q psy11993 411 PFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLI 444 (630)
Q Consensus 411 p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI 444 (630)
+.+|+|+|+.||||||++..|+..+...+..+.+
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~~~~~~~~~ 43 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLKNNNVEVKH 43 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEE
Confidence 3799999999999999999999988766666643
No 414
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=96.39 E-value=0.1 Score=52.89 Aligned_cols=27 Identities=33% Similarity=0.380 Sum_probs=24.2
Q ss_pred eEEEEEccCCCChHHHHHHHHHHHHhc
Q psy11993 412 FVMAFCGVNGVGKSTNLAKICFWLIEN 438 (630)
Q Consensus 412 ~vi~lvGpNGvGKTTllakLA~~l~~~ 438 (630)
..+.|+||+|+||||++..||..+...
T Consensus 68 ~~vll~G~~GtGKT~la~~la~~l~~~ 94 (309)
T 3syl_A 68 LHMSFTGNPGTGKTTVALKMAGLLHRL 94 (309)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 579999999999999999999888654
No 415
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.38 E-value=0.002 Score=60.55 Aligned_cols=24 Identities=29% Similarity=0.429 Sum_probs=22.5
Q ss_pred eEEEEEccCCCChHHHHHHHHHHH
Q psy11993 412 FVMAFCGVNGVGKSTNLAKICFWL 435 (630)
Q Consensus 412 ~vi~lvGpNGvGKTTllakLA~~l 435 (630)
.+|+|+|++||||||++..|+..+
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 789999999999999999999876
No 416
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.38 E-value=0.0016 Score=61.84 Aligned_cols=31 Identities=19% Similarity=0.262 Sum_probs=24.3
Q ss_pred hhhhhccCCCeEEEEEccCCCChHHHHHHHHHH
Q psy11993 402 ALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFW 434 (630)
Q Consensus 402 i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~ 434 (630)
+++....+ .+|+|+|++||||||+++.|+..
T Consensus 3 ~~~~~~~~--~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 3 GSMEQPKG--INILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ---CCCSS--CEEEEECSTTSSHHHHHHHHHHH
T ss_pred cCcCCCCC--CEEEEECCCCCCHHHHHHHHHHh
Confidence 45544445 79999999999999999999986
No 417
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=96.37 E-value=0.0024 Score=70.50 Aligned_cols=23 Identities=35% Similarity=0.364 Sum_probs=21.1
Q ss_pred eEEEEEccCCCChHHHHHHHHHH
Q psy11993 412 FVMAFCGVNGVGKSTNLAKICFW 434 (630)
Q Consensus 412 ~vi~lvGpNGvGKTTllakLA~~ 434 (630)
..|+|+|.+||||||+++.|++.
T Consensus 244 ~kV~ivG~pnvGKSSLln~L~~~ 266 (482)
T 1xzp_A 244 LRMVIVGKPNVGKSTLLNRLLNE 266 (482)
T ss_dssp EEEEEECCHHHHTCHHHHHHHHH
T ss_pred CEEEEECcCCCcHHHHHHHHHCC
Confidence 67999999999999999999864
No 418
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.36 E-value=0.014 Score=60.94 Aligned_cols=41 Identities=22% Similarity=0.263 Sum_probs=32.1
Q ss_pred CCCeEEEEEccCCCChHHHHHHHHHHHHhc--------CCeEEEeeccc
Q psy11993 409 GRPFVMAFCGVNGVGKSTNLAKICFWLIEN--------NLNVLIAACDT 449 (630)
Q Consensus 409 g~p~vi~lvGpNGvGKTTllakLA~~l~~~--------ggkVlI~~~Dt 449 (630)
+.+..+.|.||+|+||||++..++..+... +..+..+.|..
T Consensus 43 ~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~ 91 (384)
T 2qby_B 43 EVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCRE 91 (384)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECcc
Confidence 345689999999999999999999887554 55666666543
No 419
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.36 E-value=0.0038 Score=59.42 Aligned_cols=35 Identities=17% Similarity=0.192 Sum_probs=27.5
Q ss_pred eEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecc
Q psy11993 412 FVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACD 448 (630)
Q Consensus 412 ~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~D 448 (630)
.+|+|+|+.||||||++..|+..+ .+..+......
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~l--~g~~~~~~~~~ 39 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMESI--PANTIKYLNFP 39 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTS--CGGGEEEEESS
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHH--CCCceEEEecC
Confidence 789999999999999999999877 23445544443
No 420
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=96.35 E-value=0.015 Score=66.92 Aligned_cols=23 Identities=30% Similarity=0.154 Sum_probs=21.2
Q ss_pred eEEEEEccCCCChHHHHHHHHHH
Q psy11993 412 FVMAFCGVNGVGKSTNLAKICFW 434 (630)
Q Consensus 412 ~vi~lvGpNGvGKTTllakLA~~ 434 (630)
..|+|+|..|+||||+++.|.+.
T Consensus 70 ~~V~VvG~~naGKSSLlNaLlg~ 92 (695)
T 2j69_A 70 FRLLVLGDMKRGKSTFLNALIGE 92 (695)
T ss_dssp EEEEEECCTTSCHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 78999999999999999999863
No 421
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.34 E-value=0.0024 Score=60.19 Aligned_cols=25 Identities=24% Similarity=0.292 Sum_probs=23.2
Q ss_pred CeEEEEEccCCCChHHHHHHHHHHH
Q psy11993 411 PFVMAFCGVNGVGKSTNLAKICFWL 435 (630)
Q Consensus 411 p~vi~lvGpNGvGKTTllakLA~~l 435 (630)
|.+|+|+|++||||||++..|+..+
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHc
Confidence 4899999999999999999999876
No 422
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.33 E-value=0.0064 Score=57.41 Aligned_cols=34 Identities=26% Similarity=0.541 Sum_probs=28.5
Q ss_pred EEEEEccCCCChHHHHHHHHHHHHhcCCeEEEee
Q psy11993 413 VMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAA 446 (630)
Q Consensus 413 vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~ 446 (630)
+|+|.|+.||||||++..|+..+...+..|....
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~~ 35 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKR 35 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHCCC-EEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEee
Confidence 6899999999999999999999987777775443
No 423
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=96.33 E-value=0.016 Score=56.87 Aligned_cols=99 Identities=16% Similarity=0.109 Sum_probs=56.7
Q ss_pred CCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcccCCc
Q psy11993 507 IDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTI 586 (630)
Q Consensus 507 ~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK~D~~ 586 (630)
+.+-+.||+|....+. +..... ...+.+++|-+.+. .+..+.+..+...+..+.. +..+-.+|-||.|..
T Consensus 62 v~l~iwDtaGqe~~~~-l~~~~~-----~~a~~~ilv~di~~-~~Sf~~i~~~~~~i~~~~~---~~~piilVgNK~Dl~ 131 (216)
T 4dkx_A 62 IRLQLWDTAGLERFRS-LIPSYI-----RDSAAAVVVYDITN-VNSFQQTTKWIDDVRTERG---SDVIIMLVGNKTDLA 131 (216)
T ss_dssp EEEEEECCSCTTTCGG-GHHHHH-----TTCSEEEEEEETTC-HHHHHTHHHHHHHHHHHHT---TSSEEEEEEECTTCG
T ss_pred EEEEEEECCCchhhhh-HHHHHh-----ccccEEEEEeecch-hHHHHHHHHHHHHHHHhcC---CCCeEEEEeeccchH
Confidence 3455889999664432 222222 34566676665543 3455555555555554432 223446777999975
Q ss_pred Cc---cHHHHHHHHHHhCCcEEEEe--cCCCCcc
Q psy11993 587 DD---KVGAAISMTYITGQPIVFVG--TGQTYTD 615 (630)
Q Consensus 587 ~~---~~G~~ls~~~~~g~PI~fvg--~Gq~v~D 615 (630)
+. ..-.+..++...|.|...++ +|++|.+
T Consensus 132 ~~r~V~~~e~~~~a~~~~~~~~e~SAktg~nV~e 165 (216)
T 4dkx_A 132 DKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQ 165 (216)
T ss_dssp GGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHH
T ss_pred hcCcccHHHHhhHHHHhCCeeEEEeCCCCcCHHH
Confidence 32 23456677888888866554 5555543
No 424
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.33 E-value=0.0021 Score=59.28 Aligned_cols=35 Identities=26% Similarity=0.137 Sum_probs=27.4
Q ss_pred eEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCC
Q psy11993 412 FVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFR 451 (630)
Q Consensus 412 ~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R 451 (630)
.+|+|+|++||||||++..|+..+. ..+++.|.+.
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l~-----~~~i~~d~~~ 36 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKELK-----YPIIKGSSFE 36 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHC-----CCEEECCCHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC-----CeeecCcccc
Confidence 4789999999999999999998763 2345666543
No 425
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=96.30 E-value=0.0066 Score=66.89 Aligned_cols=96 Identities=23% Similarity=0.235 Sum_probs=50.6
Q ss_pred CCCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcccCC
Q psy11993 506 HIDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDT 585 (630)
Q Consensus 506 ~~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK~D~ 585 (630)
++.+.++||||..... +.+... ....|.+++|.++..|... |.......+..+ ...+ .+++||+|.
T Consensus 72 ~~~i~iiDtPGh~~~~----~~~~~~--~~~aD~~ilVvda~~g~~~--qt~e~l~~~~~~-----~ip~-IvviNK~Dl 137 (482)
T 1wb1_A 72 NYRITLVDAPGHADLI----RAVVSA--ADIIDLALIVVDAKEGPKT--QTGEHMLILDHF-----NIPI-IVVITKSDN 137 (482)
T ss_dssp TEEEEECCCSSHHHHH----HHHHHH--TTSCCEEEEEEETTTCSCH--HHHHHHHHHHHT-----TCCB-CEEEECTTS
T ss_pred CEEEEEEECCChHHHH----HHHHHH--HhhCCEEEEEEecCCCccH--HHHHHHHHHHHc-----CCCE-EEEEECCCc
Confidence 3467899999964322 222111 1457889999998876432 222211122211 1234 789999998
Q ss_pred cCcc-HHH----HHHHHHHh----CCcEEEEe--cCCCCcc
Q psy11993 586 IDDK-VGA----AISMTYIT----GQPIVFVG--TGQTYTD 615 (630)
Q Consensus 586 ~~~~-~G~----~ls~~~~~----g~PI~fvg--~Gq~v~D 615 (630)
.+.. .-. +...+... +.|+.+++ +|+.+.+
T Consensus 138 ~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~vSA~~g~gI~~ 178 (482)
T 1wb1_A 138 AGTEEIKRTEMIMKSILQSTHNLKNSSIIPISAKTGFGVDE 178 (482)
T ss_dssp SCHHHHHHHHHHHHHHHHHSSSGGGCCEEECCTTTCTTHHH
T ss_pred ccchhHHHHHHHHHHHHhhhcccccceEEEEECcCCCCHHH
Confidence 6311 111 11222233 56777766 5665543
No 426
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.30 E-value=0.0013 Score=73.65 Aligned_cols=43 Identities=19% Similarity=0.298 Sum_probs=31.9
Q ss_pred hhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEE
Q psy11993 399 LRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLI 444 (630)
Q Consensus 399 L~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI 444 (630)
+.++++.+ +| .+++|+||||+||||+++.|++.+.+..++|.+
T Consensus 99 l~~~~~~~-~g--~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~ 141 (543)
T 3m6a_A 99 VQKLTKSL-KG--PILCLAGPPGVGKTSLAKSIAKSLGRKFVRISL 141 (543)
T ss_dssp HHHHSSSC-CS--CEEEEESSSSSSHHHHHHHHHHHHTCEEEEECC
T ss_pred HHHhcccC-CC--CEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEe
Confidence 33444444 34 799999999999999999999998655444443
No 427
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.30 E-value=0.004 Score=59.43 Aligned_cols=32 Identities=28% Similarity=0.587 Sum_probs=27.3
Q ss_pred eEEEEEccCCCChHHHHHHHHHHHHhcCCeEEE
Q psy11993 412 FVMAFCGVNGVGKSTNLAKICFWLIENNLNVLI 444 (630)
Q Consensus 412 ~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI 444 (630)
.+|+|+|+.||||||++..|+..+...+ .|..
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g-~~~~ 36 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIELKR-DVYL 36 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHTTTS-CEEE
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhhcC-CEEE
Confidence 7899999999999999999999886554 5543
No 428
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=96.29 E-value=0.026 Score=61.20 Aligned_cols=23 Identities=22% Similarity=0.226 Sum_probs=21.0
Q ss_pred eEEEEEccCCCChHHHHHHHHHH
Q psy11993 412 FVMAFCGVNGVGKSTNLAKICFW 434 (630)
Q Consensus 412 ~vi~lvGpNGvGKTTllakLA~~ 434 (630)
..|+++|..|+||||++..|.+.
T Consensus 7 ~~I~iiG~~~~GKSTLi~~Ll~~ 29 (435)
T 1jny_A 7 LNLIVIGHVDHGKSTLVGRLLMD 29 (435)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEEeCCCCCHHHHHHHHHHH
Confidence 57999999999999999999865
No 429
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=96.27 E-value=0.016 Score=66.69 Aligned_cols=79 Identities=15% Similarity=0.110 Sum_probs=47.5
Q ss_pred CCCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcccCC
Q psy11993 506 HIDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDT 585 (630)
Q Consensus 506 ~~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK~D~ 585 (630)
++.+.++||+|.........+.+. ..|.+++|.++..+..... ...+.. +..+ .....+++||+|.
T Consensus 76 ~~~i~liDTPG~~df~~~~~~~l~------~aD~~ilVvDa~~g~~~~t-~~~~~~-~~~~------~~p~ivviNKiD~ 141 (691)
T 1dar_A 76 DHRINIIDTPGHVDFTIEVERSMR------VLDGAIVVFDSSQGVEPQS-ETVWRQ-AEKY------KVPRIAFANKMDK 141 (691)
T ss_dssp TEEEEEECCCSSTTCHHHHHHHHH------HCSEEEEEEETTTCSCHHH-HHHHHH-HHHT------TCCEEEEEECTTS
T ss_pred CeEEEEEECcCccchHHHHHHHHH------HCCEEEEEEECCCCcchhh-HHHHHH-HHHc------CCCEEEEEECCCc
Confidence 457789999998654444444444 3578888999987765332 222332 2222 1245688999998
Q ss_pred cCccHHHHHHHHH
Q psy11993 586 IDDKVGAAISMTY 598 (630)
Q Consensus 586 ~~~~~G~~ls~~~ 598 (630)
.....-.++....
T Consensus 142 ~~~~~~~~~~~l~ 154 (691)
T 1dar_A 142 TGADLWLVIRTMQ 154 (691)
T ss_dssp TTCCHHHHHHHHH
T ss_pred ccCCHHHHHHHHH
Confidence 6444444444333
No 430
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.26 E-value=0.0043 Score=59.39 Aligned_cols=35 Identities=17% Similarity=0.065 Sum_probs=31.2
Q ss_pred eEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEee
Q psy11993 412 FVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAA 446 (630)
Q Consensus 412 ~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~ 446 (630)
.+++++||.|+||||++..++..+...+.+|+++.
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~~ 38 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIYKLGKKKVAVFK 38 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 68999999999999999999988877788888864
No 431
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.26 E-value=0.0034 Score=66.57 Aligned_cols=39 Identities=21% Similarity=0.277 Sum_probs=30.5
Q ss_pred hhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHH
Q psy11993 398 ILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLI 436 (630)
Q Consensus 398 iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~ 436 (630)
+++.+++.+.+|....|+|+|++|+||||++..||..+.
T Consensus 11 il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 11 VLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp HHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 344455566677556799999999999999999997664
No 432
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.24 E-value=0.0028 Score=59.56 Aligned_cols=25 Identities=36% Similarity=0.449 Sum_probs=22.9
Q ss_pred CeEEEEEccCCCChHHHHHHHHHHH
Q psy11993 411 PFVMAFCGVNGVGKSTNLAKICFWL 435 (630)
Q Consensus 411 p~vi~lvGpNGvGKTTllakLA~~l 435 (630)
|.+|+|+|++||||||++..|+..+
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 4799999999999999999999766
No 433
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=96.24 E-value=0.015 Score=56.62 Aligned_cols=21 Identities=33% Similarity=0.485 Sum_probs=19.1
Q ss_pred eEEEEEccCCCChHHHHHHHH
Q psy11993 412 FVMAFCGVNGVGKSTNLAKIC 432 (630)
Q Consensus 412 ~vi~lvGpNGvGKTTllakLA 432 (630)
..|+|||.+||||||++..++
T Consensus 38 ~kVvlvG~~~vGKSSLl~r~~ 58 (211)
T 2g3y_A 38 YRVVLIGEQGVGKSTLANIFA 58 (211)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 569999999999999998876
No 434
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=96.22 E-value=0.0025 Score=60.63 Aligned_cols=23 Identities=35% Similarity=0.486 Sum_probs=21.1
Q ss_pred eEEEEEccCCCChHHHHHHHHHH
Q psy11993 412 FVMAFCGVNGVGKSTNLAKICFW 434 (630)
Q Consensus 412 ~vi~lvGpNGvGKTTllakLA~~ 434 (630)
..++|+|+|||||||++..|++.
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHhcC
Confidence 57899999999999999999875
No 435
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=96.18 E-value=0.0098 Score=66.15 Aligned_cols=97 Identities=6% Similarity=-0.026 Sum_probs=52.1
Q ss_pred CCCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcccCC
Q psy11993 506 HIDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDT 585 (630)
Q Consensus 506 ~~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK~D~ 585 (630)
++.+.+.||+|...... +...+. .+++.+++|.|++...+ ...+...+..+.. .....+|.||+|.
T Consensus 97 ~~~~~i~Dt~G~e~~~~-~~~~~l-----~~~d~ii~V~D~s~~~~----~~~~~~~l~~~~~----~~pvilV~NK~Dl 162 (535)
T 3dpu_A 97 ECLFHFWDFGGQEIMHA-SHQFFM-----TRSSVYMLLLDSRTDSN----KHYWLRHIEKYGG----KSPVIVVMNKIDE 162 (535)
T ss_dssp TCEEEEECCCSCCTTTT-TCHHHH-----HSSEEEEEEECGGGGGG----HHHHHHHHHHHSS----SCCEEEEECCTTT
T ss_pred eEEEEEEECCcHHHHHH-HHHHHc-----cCCcEEEEEEeCCCchh----HHHHHHHHHHhCC----CCCEEEEEECCCc
Confidence 45688999999543221 111111 35788888988876533 2334444544432 1345689999997
Q ss_pred cCcc---HHHHHHHHHHhCCcEEEEe--cCCCCccC
Q psy11993 586 IDDK---VGAAISMTYITGQPIVFVG--TGQTYTDL 616 (630)
Q Consensus 586 ~~~~---~G~~ls~~~~~g~PI~fvg--~Gq~v~DL 616 (630)
.... .-.+.......+.|+..++ +|+++.+|
T Consensus 163 ~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g~gi~eL 198 (535)
T 3dpu_A 163 NPSYNIEQKKINERFPAIENRFHRISCKNGDGVESI 198 (535)
T ss_dssp CTTCCCCHHHHHHHCGGGTTCEEECCC-----CTTH
T ss_pred ccccccCHHHHHHHHHhcCCceEEEecCcccCHHHH
Confidence 5211 2223334445677877755 56665543
No 436
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.16 E-value=0.0053 Score=56.73 Aligned_cols=27 Identities=19% Similarity=0.278 Sum_probs=23.8
Q ss_pred CeEEEEEccCCCChHHHHHHHHHHHHh
Q psy11993 411 PFVMAFCGVNGVGKSTNLAKICFWLIE 437 (630)
Q Consensus 411 p~vi~lvGpNGvGKTTllakLA~~l~~ 437 (630)
+..+.|+||+|+||||++..++..+..
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 357899999999999999999988765
No 437
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.14 E-value=0.0028 Score=59.07 Aligned_cols=35 Identities=20% Similarity=0.090 Sum_probs=27.1
Q ss_pred eEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeeccc
Q psy11993 412 FVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDT 449 (630)
Q Consensus 412 ~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt 449 (630)
.+|.|+|++||||||+++.|+..+. .....++.|.
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~---~~~~~~~~D~ 38 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLP---EPWLAFGVDS 38 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSS---SCEEEEEHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC---CCeEEeccch
Confidence 6899999999999999999998763 2333345554
No 438
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=96.12 E-value=0.026 Score=60.32 Aligned_cols=27 Identities=30% Similarity=0.178 Sum_probs=23.1
Q ss_pred eEEEEEccCCCChHHHHHHHHHHHHhc
Q psy11993 412 FVMAFCGVNGVGKSTNLAKICFWLIEN 438 (630)
Q Consensus 412 ~vi~lvGpNGvGKTTllakLA~~l~~~ 438 (630)
-.|+++|..|+||||++..|.+.....
T Consensus 4 ~~I~iiG~~~~GKSTLi~~L~~~~~~~ 30 (397)
T 1d2e_A 4 VNVGTIGHVDHGKTTLTAAITKILAEG 30 (397)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHT
T ss_pred EEEEEEeCCCCCHHHHHHHHhChhhhc
Confidence 468999999999999999998765443
No 439
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.11 E-value=0.0034 Score=59.29 Aligned_cols=25 Identities=28% Similarity=0.287 Sum_probs=23.0
Q ss_pred CeEEEEEccCCCChHHHHHHHHHHH
Q psy11993 411 PFVMAFCGVNGVGKSTNLAKICFWL 435 (630)
Q Consensus 411 p~vi~lvGpNGvGKTTllakLA~~l 435 (630)
+.+|+|+|+.||||||+++.|+..+
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 3799999999999999999999876
No 440
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=96.11 E-value=0.0035 Score=60.86 Aligned_cols=25 Identities=36% Similarity=0.329 Sum_probs=22.8
Q ss_pred eEEEEEccCCCChHHHHHHHHHHHH
Q psy11993 412 FVMAFCGVNGVGKSTNLAKICFWLI 436 (630)
Q Consensus 412 ~vi~lvGpNGvGKTTllakLA~~l~ 436 (630)
.+.+|+||||+||||++..|+..+.
T Consensus 24 ~~~~I~G~NgsGKStil~ai~~~l~ 48 (203)
T 3qks_A 24 GINLIIGQNGSGKSSLLDAILVGLY 48 (203)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHhc
Confidence 6999999999999999999987664
No 441
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=96.10 E-value=0.002 Score=69.27 Aligned_cols=25 Identities=28% Similarity=0.333 Sum_probs=22.9
Q ss_pred ccCCCeEEEEEccCCCChHHHHHHHHH
Q psy11993 407 KQGRPFVMAFCGVNGVGKSTNLAKICF 433 (630)
Q Consensus 407 ~~g~p~vi~lvGpNGvGKTTllakLA~ 433 (630)
..| ..++|||+|||||||+++.|++
T Consensus 18 ~~g--~~vgiVG~pnaGKSTL~n~Ltg 42 (392)
T 1ni3_A 18 GNN--LKTGIVGMPNVGKSTFFRAITK 42 (392)
T ss_dssp SSC--CEEEEEECSSSSHHHHHHHHHH
T ss_pred cCC--CEEEEECCCCCCHHHHHHHHHC
Confidence 345 7999999999999999999998
No 442
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=96.07 E-value=0.0091 Score=57.61 Aligned_cols=97 Identities=13% Similarity=0.098 Sum_probs=53.2
Q ss_pred CCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcccCCc
Q psy11993 507 IDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTI 586 (630)
Q Consensus 507 ~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK~D~~ 586 (630)
+.+.++||+|...... +..... ...+.+++|.+.+... ....+..+...+..+.. ...-.+|+||+|..
T Consensus 64 ~~~~i~Dt~G~~~~~~-~~~~~~-----~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~----~~p~ilv~nK~Dl~ 132 (221)
T 3gj0_A 64 IKFNVWDTAGQEKFGG-LRDGYY-----IQAQCAIIMFDVTSRV-TYKNVPNWHRDLVRVCE----NIPIVLCGNKVDIK 132 (221)
T ss_dssp EEEEEEEECSGGGTSC-CCHHHH-----TTCCEEEEEEETTCHH-HHHTHHHHHHHHHHHST----TCCEEEEEECTTSS
T ss_pred EEEEEEeCCChHHHhH-HHHHHH-----hcCCEEEEEEECCCHH-HHHHHHHHHHHHHHhCC----CCCEEEEEECCccc
Confidence 4567899999653221 111222 3567888888876542 33334444444443321 23457889999965
Q ss_pred CccH-HHHHHHHHHhCCcEEEEe--cCCCCc
Q psy11993 587 DDKV-GAAISMTYITGQPIVFVG--TGQTYT 614 (630)
Q Consensus 587 ~~~~-G~~ls~~~~~g~PI~fvg--~Gq~v~ 614 (630)
+... -.+.......+.|+..++ +|+.+.
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 163 (221)
T 3gj0_A 133 DRKVKAKSIVFHRKKNLQYYDISAKSNYNFE 163 (221)
T ss_dssp SCSSCGGGCCHHHHHTCEEEECBGGGTBTTT
T ss_pred cccccHHHHHHHHHcCCEEEEEeCCCCCCHH
Confidence 3222 123344556677777665 455544
No 443
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.07 E-value=0.021 Score=55.71 Aligned_cols=36 Identities=28% Similarity=0.360 Sum_probs=29.7
Q ss_pred EEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCc
Q psy11993 413 VMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRA 452 (630)
Q Consensus 413 vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ 452 (630)
+|.|+||+||||+|.+.+||..+ +=+.|-+.|.+|.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~----g~~~istGdllR~ 37 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK----GFVHISTGDILRE 37 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH----CCEEEEHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH----CCeEEcHHHHHHH
Confidence 58899999999999999999766 4456777787774
No 444
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=96.04 E-value=0.0072 Score=64.89 Aligned_cols=51 Identities=18% Similarity=0.129 Sum_probs=38.7
Q ss_pred hhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcC--CeEEEeecccCCccHH
Q psy11993 402 ALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENN--LNVLIAACDTFRAGAV 455 (630)
Q Consensus 402 i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~g--gkVlI~~~Dt~R~ga~ 455 (630)
+++.+..| +.++|+||+|+||||++..|+.+...++ -.+.++.++- |...+
T Consensus 167 ~~~pi~rG--Qr~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~~I~~lIGE-R~~Ev 219 (422)
T 3ice_A 167 LASPIGRG--QRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDE-RPEEV 219 (422)
T ss_dssp HHSCCBTT--CEEEEECCSSSSHHHHHHHHHHHHHHHCTTSEEEEEEESS-CHHHH
T ss_pred eeeeecCC--cEEEEecCCCCChhHHHHHHHHHHhhcCCCeeEEEEEecC-ChHHH
Confidence 45556677 8999999999999999999999887653 2455667775 54444
No 445
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=96.03 E-value=0.053 Score=65.47 Aligned_cols=114 Identities=15% Similarity=0.148 Sum_probs=59.5
Q ss_pred CCccCCccchHHHHHHHHHHHHHcCCCHHHHHHHHHH-HHHHhc-----CCccCCccchHHHHHHHHHHHHHHH------
Q psy11993 322 GSKNLTKSDMKPILEKMKDHLIAKNVAADIAVKLCDS-VALKLE-----GKVLGTFESVANTVKSTLTDALVQI------ 389 (630)
Q Consensus 322 ~~~~l~~~~l~~~l~~l~~~Li~~~V~~~ia~~l~~~-v~~~l~-----g~~~~~~~~~~~~v~~~l~~~L~~i------ 389 (630)
....++.+.++...+-+.+...+.|=+..+++++++. +.+.+. .++- .-....+|.+.+.+.-.++
T Consensus 182 ~~~~vp~~~ve~E~~i~~~~a~~~gKPe~i~eKiveGrl~Kf~~E~~Ll~Q~f--v~d~~~TV~~llke~~a~V~~FvRf 259 (1289)
T 3avx_A 182 KPEDVSAEVVEKEYQVQLDIAMQSGKPKEIAEKMVEGRMKKFTGEVSLTGQPF--VMEPSKTVGQLLKEHNAEVTGFIRF 259 (1289)
T ss_dssp STTTSCTTHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHTBSTTSBC--TTSTTSBHHHHHHTTTCEEEEEEEE
T ss_pred chhhCCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhccCCce--eecCccCHHHHHHhcCcEEEEeeeE
Confidence 4445566666666666667777789999999988774 443332 2210 0011223433333211111
Q ss_pred -cCC---Ccchhhhhhhhhh----h-------ccCCCeEEEEEccCCCChHHHHHHHHHHHHh
Q psy11993 390 -LSP---KRRVDILRDALEA----K-------KQGRPFVMAFCGVNGVGKSTNLAKICFWLIE 437 (630)
Q Consensus 390 -l~~---~~~~~iL~~i~~~----i-------~~g~p~vi~lvGpNGvGKTTllakLA~~l~~ 437 (630)
++. ....+....+.-. . .......|+++|..++||||++..|.+....
T Consensus 260 EVGEGIEK~e~dfAaEVaaql~~e~m~k~~~~~~k~~lnIvIIGhvDvGKSTLInrLt~~~~~ 322 (1289)
T 3avx_A 260 EVGEGIEKVETDFAAEVAAMSKQSHMSKEKFERTKPHVNVGTIGHVDHGKTTLTAAITTVLAK 322 (1289)
T ss_dssp ETTTTCCCCCCCHHHHHHHHHHHHHCC---CCCCCCEEEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred eccccccccchhhhhhhhhhhhhhhhhhhhhhccCCeeEEEEEcCCCCCHHHHHHHHHhhhcc
Confidence 111 0001111111100 1 1122356999999999999999999876543
No 446
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=96.02 E-value=0.0052 Score=64.81 Aligned_cols=34 Identities=18% Similarity=0.234 Sum_probs=29.5
Q ss_pred eEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccC
Q psy11993 412 FVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTF 450 (630)
Q Consensus 412 ~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~ 450 (630)
.+|+|+||+||||||++..||..+. +.++.+|.+
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~-----~~iis~Ds~ 41 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN-----GEIISGDSM 41 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT-----EEEEECCSS
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC-----Cceeccccc
Confidence 5899999999999999999998763 567888875
No 447
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=96.01 E-value=0.0051 Score=65.45 Aligned_cols=37 Identities=16% Similarity=0.094 Sum_probs=32.5
Q ss_pred eEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecc
Q psy11993 412 FVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACD 448 (630)
Q Consensus 412 ~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~D 448 (630)
..++|+||+|+||||+++.|+..+...+++|.+++.+
T Consensus 36 ~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~D~~ 72 (392)
T 4ag6_A 36 SNWTILAKPGAGKSFTAKMLLLREYMQGSRVIIIDPE 72 (392)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEESS
T ss_pred CceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 5789999999999999999999888888999887643
No 448
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=96.01 E-value=0.025 Score=65.31 Aligned_cols=77 Identities=14% Similarity=0.124 Sum_probs=45.5
Q ss_pred CCCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcccCC
Q psy11993 506 HIDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDT 585 (630)
Q Consensus 506 ~~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK~D~ 585 (630)
.+++.++||+|.........++|. ..|.+|+|.+++.|..... ...+.. +..+ .....+++||+|.
T Consensus 81 ~~~i~liDTPG~~df~~~~~~~l~------~aD~aIlVvDa~~gv~~qt-~~~~~~-~~~~------~ip~ilviNKiD~ 146 (704)
T 2rdo_7 81 PHRINIIDTPGHVDFTIEVERSMR------VLDGAVMVYCAVGGVQPQS-ETVWRQ-ANKY------KVPRIAFVNKMDR 146 (704)
T ss_pred ceeEEEEeCCCccchHHHHHHHHH------HCCEEEEEEeCCCCCcHHH-HHHHHH-HHHc------CCCEEEEEeCCCc
Confidence 467889999997654444444443 3578888999987754221 122222 2211 1234688999997
Q ss_pred cCccHHHHHHH
Q psy11993 586 IDDKVGAAISM 596 (630)
Q Consensus 586 ~~~~~G~~ls~ 596 (630)
.....-.++..
T Consensus 147 ~~~~~~~~~~~ 157 (704)
T 2rdo_7 147 MGANFLKVVNQ 157 (704)
T ss_pred ccccHHHHHHH
Confidence 64444444443
No 449
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.00 E-value=0.004 Score=58.51 Aligned_cols=24 Identities=17% Similarity=0.231 Sum_probs=22.3
Q ss_pred eEEEEEccCCCChHHHHHHHHHHH
Q psy11993 412 FVMAFCGVNGVGKSTNLAKICFWL 435 (630)
Q Consensus 412 ~vi~lvGpNGvGKTTllakLA~~l 435 (630)
.+|+|+|++||||||++..|+..+
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 689999999999999999999876
No 450
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=95.99 E-value=0.0029 Score=68.41 Aligned_cols=62 Identities=15% Similarity=0.116 Sum_probs=41.8
Q ss_pred cccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 514 TAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 514 TaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
.|||+++...++.+|+..- . .|..++++|||++++|..... .+.+.+..+.. .+...||+|+
T Consensus 334 lS~Gq~~~~~la~~la~~~-~-~~~~~lllDEp~~~LD~~~~~-~l~~~l~~~~~----~~~~~ii~th 395 (430)
T 1w1w_A 334 LSGGEKTVAALALLFAINS-Y-QPSPFFVLDEVDAALDITNVQ-RIAAYIRRHRN----PDLQFIVISL 395 (430)
T ss_dssp SCHHHHHHHHHHHHHHHHT-S-SCCSEEEESSTTTTCCHHHHH-HHHHHHHHHCB----TTBEEEEECS
T ss_pred CCcchHHHHHHHHHHHHhc-C-CCCCEEEeCCCcccCCHHHHH-HHHHHHHHHhc----CCCEEEEEEC
Confidence 5888888888888776221 1 333688899999999987653 44455655432 1456778886
No 451
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=95.97 E-value=0.0041 Score=62.44 Aligned_cols=33 Identities=18% Similarity=0.085 Sum_probs=26.3
Q ss_pred eEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeeccc
Q psy11993 412 FVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDT 449 (630)
Q Consensus 412 ~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt 449 (630)
.+++|+||+||||||++..||..+. ..++..|.
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~-----~~~i~~D~ 34 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETG-----WPVVALDR 34 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHC-----CCEEECCS
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCC-----CeEEeccH
Confidence 4789999999999999999998762 23456665
No 452
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=95.96 E-value=0.0071 Score=56.77 Aligned_cols=32 Identities=31% Similarity=0.549 Sum_probs=27.3
Q ss_pred EEEEEccCCCChHHHHHHHHHHHHhcCCeEEE
Q psy11993 413 VMAFCGVNGVGKSTNLAKICFWLIENNLNVLI 444 (630)
Q Consensus 413 vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI 444 (630)
+|+|+|+.||||||++..|+..+...+..+.-
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~ 33 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSL 33 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence 68999999999999999999988766665543
No 453
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=95.96 E-value=0.032 Score=65.04 Aligned_cols=53 Identities=21% Similarity=0.283 Sum_probs=33.9
Q ss_pred eEEEEEccCCCChHHHHHHHHHHHHhc---CCeEEEeecccCCccHHHHHHHHHhhhc
Q psy11993 412 FVMAFCGVNGVGKSTNLAKICFWLIEN---NLNVLIAACDTFRAGAVEQLRTHVRHLC 466 (630)
Q Consensus 412 ~vi~lvGpNGvGKTTllakLA~~l~~~---ggkVlI~~~Dt~R~ga~eQLr~~~~~l~ 466 (630)
.+++++||||+||||++..++...... +.+|++. . +.|..+.++.+..+..++
T Consensus 110 ~~vii~gpTGSGKTtllp~ll~~~~~~~~~g~~ilvl-~-P~r~La~q~~~~l~~~~~ 165 (773)
T 2xau_A 110 QIMVFVGETGSGKTTQIPQFVLFDEMPHLENTQVACT-Q-PRRVAAMSVAQRVAEEMD 165 (773)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHHHCGGGGTCEEEEE-E-SCHHHHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhccccCCCceEEec-C-chHHHHHHHHHHHHHHhC
Confidence 689999999999999888876544322 3445554 3 336655555444444443
No 454
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=95.95 E-value=0.0065 Score=57.49 Aligned_cols=27 Identities=22% Similarity=0.290 Sum_probs=23.2
Q ss_pred eEEEEEccCCCChHHHHHHHHHHHHhc
Q psy11993 412 FVMAFCGVNGVGKSTNLAKICFWLIEN 438 (630)
Q Consensus 412 ~vi~lvGpNGvGKTTllakLA~~l~~~ 438 (630)
..+.|.||.|+||||++..++..+...
T Consensus 39 ~~~ll~G~~G~GKT~l~~~l~~~~~~~ 65 (226)
T 2chg_A 39 PHLLFSGPPGTGKTATAIALARDLFGE 65 (226)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHHHGG
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 348999999999999999999877544
No 455
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=95.95 E-value=0.0045 Score=58.74 Aligned_cols=26 Identities=35% Similarity=0.581 Sum_probs=23.4
Q ss_pred CCCeEEEEEccCCCChHHHHHHHHHH
Q psy11993 409 GRPFVMAFCGVNGVGKSTNLAKICFW 434 (630)
Q Consensus 409 g~p~vi~lvGpNGvGKTTllakLA~~ 434 (630)
++|.+|+|+|++||||||++..|+..
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 45689999999999999999999874
No 456
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=95.95 E-value=0.0042 Score=58.88 Aligned_cols=24 Identities=42% Similarity=0.342 Sum_probs=22.1
Q ss_pred EEEEEccCCCChHHHHHHHHHHHH
Q psy11993 413 VMAFCGVNGVGKSTNLAKICFWLI 436 (630)
Q Consensus 413 vi~lvGpNGvGKTTllakLA~~l~ 436 (630)
+|+|+|+.||||||+++.|+..+.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 689999999999999999998873
No 457
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=95.91 E-value=0.0043 Score=64.01 Aligned_cols=38 Identities=18% Similarity=0.167 Sum_probs=33.0
Q ss_pred eEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeeccc
Q psy11993 412 FVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDT 449 (630)
Q Consensus 412 ~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt 449 (630)
..+.|.||+|+||||++..|+..+...+..+..+.+..
T Consensus 38 ~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~ 75 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADD 75 (324)
T ss_dssp SSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHH
Confidence 57899999999999999999999887778888777654
No 458
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=95.89 E-value=0.1 Score=56.90 Aligned_cols=23 Identities=22% Similarity=0.279 Sum_probs=20.8
Q ss_pred eEEEEEccCCCChHHHHHHHHHH
Q psy11993 412 FVMAFCGVNGVGKSTNLAKICFW 434 (630)
Q Consensus 412 ~vi~lvGpNGvGKTTllakLA~~ 434 (630)
..|+++|..++|||||+..|.+.
T Consensus 8 ~~i~iiG~~~~GKSTLi~~Ll~~ 30 (458)
T 1f60_A 8 INVVVIGHVDSGKSTTTGHLIYK 30 (458)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 56899999999999999999865
No 459
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=95.89 E-value=0.017 Score=58.27 Aligned_cols=37 Identities=22% Similarity=0.333 Sum_probs=28.5
Q ss_pred CeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccC
Q psy11993 411 PFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTF 450 (630)
Q Consensus 411 p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~ 450 (630)
+..+.|+||+|+||||++..|+..+ +..+..+.|..+
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~l---~~~~~~i~~~~~ 86 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKLA---NAPFIKVEATKF 86 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHH---TCCEEEEEGGGG
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh---CCCEEEEcchhc
Confidence 4578899999999999999999887 345555555443
No 460
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=95.89 E-value=0.0061 Score=63.68 Aligned_cols=73 Identities=15% Similarity=0.141 Sum_probs=36.7
Q ss_pred CCCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcccCC
Q psy11993 506 HIDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDT 585 (630)
Q Consensus 506 ~~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK~D~ 585 (630)
++.+.++||+|....... ..... ...+.+|+|.+.+...........+.+.+..... +...-.+|+||.|.
T Consensus 208 ~~~l~i~Dt~G~~~~~~~-~~~~~-----~~ad~vilV~D~~~~~s~~~~~~~~~~~~~~~~~---~~~piilV~NK~Dl 278 (329)
T 3o47_A 208 NISFTVWDVGGQDKIRPL-WRHYF-----QNTQGLIFVVDSNDRERVNEAREELMRMLAEDEL---RDAVLLVFANKQDL 278 (329)
T ss_dssp TEEEEEEECC-----CCS-HHHHH-----TTEEEEEEEEETTCSSSHHHHHHHHHHHHTCGGG---TTCEEEEEEECTTS
T ss_pred cEEEEEEECCCCHhHHHH-HHHHh-----ccCCEEEEEEECCchHHHHHHHHHHHHHHhhhcc---CCCeEEEEEECccC
Confidence 345779999995443222 12222 3567788888886543332322333333332211 12345788899997
Q ss_pred cC
Q psy11993 586 ID 587 (630)
Q Consensus 586 ~~ 587 (630)
.+
T Consensus 279 ~~ 280 (329)
T 3o47_A 279 PN 280 (329)
T ss_dssp TT
T ss_pred Cc
Confidence 53
No 461
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=95.88 E-value=0.0053 Score=57.55 Aligned_cols=25 Identities=36% Similarity=0.355 Sum_probs=23.0
Q ss_pred CeEEEEEccCCCChHHHHHHHHHHH
Q psy11993 411 PFVMAFCGVNGVGKSTNLAKICFWL 435 (630)
Q Consensus 411 p~vi~lvGpNGvGKTTllakLA~~l 435 (630)
+.+|+|+|+.||||||++..|+..+
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4799999999999999999999876
No 462
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=95.87 E-value=0.12 Score=49.88 Aligned_cols=48 Identities=23% Similarity=0.396 Sum_probs=37.2
Q ss_pred EEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHH
Q psy11993 413 VMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTH 461 (630)
Q Consensus 413 vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~ 461 (630)
.|+|=|+-||||||.+..|+.+|...|.+|.+..... .....+.++.+
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~treP~-~t~~~~~ir~~ 49 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKREPG-GTETGEKIRKI 49 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSC-SSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEECCC-CCcHHHHHHHH
Confidence 4778899999999999999999999988887765543 33344555554
No 463
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=95.86 E-value=0.0051 Score=58.72 Aligned_cols=28 Identities=25% Similarity=0.210 Sum_probs=24.4
Q ss_pred cCCCeEEEEEccCCCChHHHHHHHHHHH
Q psy11993 408 QGRPFVMAFCGVNGVGKSTNLAKICFWL 435 (630)
Q Consensus 408 ~g~p~vi~lvGpNGvGKTTllakLA~~l 435 (630)
+.++.+|+|+|+.||||||++..|+..+
T Consensus 12 ~~~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 12 PDQVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TTTCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3456899999999999999999999765
No 464
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=95.85 E-value=0.005 Score=58.26 Aligned_cols=24 Identities=25% Similarity=0.257 Sum_probs=22.7
Q ss_pred eEEEEEccCCCChHHHHHHHHHHH
Q psy11993 412 FVMAFCGVNGVGKSTNLAKICFWL 435 (630)
Q Consensus 412 ~vi~lvGpNGvGKTTllakLA~~l 435 (630)
.+|+|+|+.||||||+++.|+..+
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 799999999999999999999877
No 465
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=95.83 E-value=0.0058 Score=58.43 Aligned_cols=28 Identities=29% Similarity=0.398 Sum_probs=24.6
Q ss_pred cCCCeEEEEEccCCCChHHHHHHHHHHH
Q psy11993 408 QGRPFVMAFCGVNGVGKSTNLAKICFWL 435 (630)
Q Consensus 408 ~g~p~vi~lvGpNGvGKTTllakLA~~l 435 (630)
..+|.+|+|+|+.||||||++..|+..+
T Consensus 17 ~~~~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 17 RGSHMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3455799999999999999999999876
No 466
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=95.82 E-value=0.004 Score=57.39 Aligned_cols=94 Identities=15% Similarity=0.126 Sum_probs=49.7
Q ss_pred Ceeeeccccchhch-----HHHHHHHHhhhhhcCCCeEEEEeccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcc
Q psy11993 508 DVVLIDTAGRMQDN-----EPLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582 (630)
Q Consensus 508 D~vlIDTaGr~~~~-----~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK 582 (630)
.+.++||+|..... ..+..... ....++.+++|.|++... ....+...+.+. .....+|.||
T Consensus 51 ~l~i~Dt~G~~~~~~~~~~~~~~~~~~---~~~~~~~~i~v~D~~~~~----~~~~~~~~~~~~------~~p~ilv~nK 117 (165)
T 2wji_A 51 KFKVVDLPGVYSLTANSIDEIIARDYI---INEKPDLVVNIVDATALE----RNLYLTLQLMEM------GANLLLALNK 117 (165)
T ss_dssp EEEEEECCCCSCSSSSSHHHHHHHHHH---HHHCCSEEEEEEETTCHH----HHHHHHHHHHHT------TCCEEEEEEC
T ss_pred EEEEEECCCcccCCCcchhHHHHHHHH---hcCCCCEEEEEecCCchh----HhHHHHHHHHhc------CCCEEEEEEc
Confidence 46689999965421 22222222 223688888888886421 111222222221 1245688899
Q ss_pred cCCcCcc-H-HHHHHHHHHhCCcEEEEe--cCCCCc
Q psy11993 583 FDTIDDK-V-GAAISMTYITGQPIVFVG--TGQTYT 614 (630)
Q Consensus 583 ~D~~~~~-~-G~~ls~~~~~g~PI~fvg--~Gq~v~ 614 (630)
+|..... + -.+..++...+.|+..++ +|+++.
T Consensus 118 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~~v~ 153 (165)
T 2wji_A 118 MDLAKSLGIEIDVDKLEKILGVKVVPLSAAKKMGIE 153 (165)
T ss_dssp HHHHHHTTCCCCHHHHHHHHTSCEEECBGGGTBSHH
T ss_pred hHhccccChhhHHHHHHHHhCCCEEEEEcCCCCCHH
Confidence 9964111 0 013455666788887765 455444
No 467
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=95.81 E-value=0.013 Score=61.27 Aligned_cols=34 Identities=21% Similarity=0.216 Sum_probs=27.7
Q ss_pred CeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeeccc
Q psy11993 411 PFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDT 449 (630)
Q Consensus 411 p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt 449 (630)
+.+|+|+||+||||||++..||..+. ..++.+|.
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~~-----~~iis~Ds 36 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRLN-----GEVISGDS 36 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTTT-----EEEEECCG
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhCc-----cceeecCc
Confidence 36899999999999999999997652 35677775
No 468
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=95.79 E-value=0.0054 Score=61.27 Aligned_cols=25 Identities=32% Similarity=0.345 Sum_probs=23.0
Q ss_pred CeEEEEEccCCCChHHHHHHHHHHH
Q psy11993 411 PFVMAFCGVNGVGKSTNLAKICFWL 435 (630)
Q Consensus 411 p~vi~lvGpNGvGKTTllakLA~~l 435 (630)
|.+|+|+||+||||||++..|+..+
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999999876
No 469
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=95.76 E-value=0.01 Score=65.67 Aligned_cols=47 Identities=15% Similarity=0.097 Sum_probs=34.6
Q ss_pred hhhhhhhhhhccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeeccc
Q psy11993 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDT 449 (630)
Q Consensus 397 ~iL~~i~~~i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt 449 (630)
.+++++++.++.| ++|+||||+||||+++.||+.+. .+-|.+.+.+.
T Consensus 54 ~~~~~lg~~ip~G----vLL~GppGtGKTtLaraIa~~~~--~~~i~i~g~~~ 100 (499)
T 2dhr_A 54 SRFHEMGARIPKG----VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDF 100 (499)
T ss_dssp GGTTTTSCCCCSE----EEEECSSSSSHHHHHHHHHHHTT--CCEEEEEGGGG
T ss_pred hhhhhccCCCCce----EEEECCCCCCHHHHHHHHHHHhC--CCEEEEehhHH
Confidence 3456666655443 89999999999999999998874 45566665554
No 470
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=95.75 E-value=0.019 Score=71.91 Aligned_cols=89 Identities=16% Similarity=0.143 Sum_probs=56.6
Q ss_pred eEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccCCCcCCcchhhhHhhhccCCCCH
Q psy11993 412 FVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHPAAKHGGREMVQLFEKGYGKDP 491 (630)
Q Consensus 412 ~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~~~~~tv~env~l~~~~~~~d~ 491 (630)
.+|-|.||.|+||||++..++.-....++.+.+++..--. .+ .|+..++.... ++.+. + ++.
T Consensus 1432 ~~iei~g~~~sGkttl~~~~~a~~~~~g~~~~~i~~e~~~----~~--~~~~~~Gv~~~--------~l~~~---~-p~~ 1493 (1706)
T 3cmw_A 1432 RIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHAL----DP--IYARKLGVDID--------NLLCS---Q-PDT 1493 (1706)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCC----CH--HHHHHTTCCGG--------GCEEE---C-CSS
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEecCCCC----CH--HHHHHcCCCHH--------HeEEe---C-CCc
Confidence 7999999999999999999998888889999988875311 11 14566665322 11111 1 222
Q ss_pred HHHHHHHHH-HhhhcCCCeeeeccccch
Q psy11993 492 AEIAFRAIS-HARDMHIDVVLIDTAGRM 518 (630)
Q Consensus 492 ~~ia~~ai~-~a~~~~~D~vlIDTaGr~ 518 (630)
.+.+..+++ .++...+|+|+||..-.+
T Consensus 1494 ~e~~l~~~~~~~~s~~~~~vvvDsv~al 1521 (1706)
T 3cmw_A 1494 GEQALEICDALARSGAVDVIVVDSVAAL 1521 (1706)
T ss_dssp HHHHHHHHHHHHHHTCCSEEEESCSTTC
T ss_pred HHHHHHHHHHHHHcCCCCEEEEccHHhC
Confidence 232323322 345677899999985433
No 471
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=95.75 E-value=0.017 Score=63.26 Aligned_cols=72 Identities=14% Similarity=0.091 Sum_probs=40.5
Q ss_pred CCCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcccCC
Q psy11993 506 HIDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDT 585 (630)
Q Consensus 506 ~~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK~D~ 585 (630)
++.+.++||+|....+... .......|.+|+|.+.+...........+.+.+..... ......+|+||.|.
T Consensus 365 ~~~~~l~Dt~G~~~~~~~~------~~~~~~ad~~i~V~D~~~~~s~~~~~~~~~~~~~~~~~---~~~p~ilv~NK~Dl 435 (497)
T 3lvq_E 365 NVKFNVWDVGGQDKIRPLW------RHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREM---RDAIILIFANKQDL 435 (497)
T ss_dssp SCEEEEEEECCCGGGSGGG------GGGGTTCCEEEEEEETTCGGGHHHHHHHHHHHHTSGGG---TTCEEEEEEECCSS
T ss_pred CEEEEEEECCCcHHHHHHH------HHHhccCCEEEEEEECcchhHHHHHHHHHHHHhhhhhc---CCCcEEEEEECCCC
Confidence 4567899999965432211 11124678899999887654333332333333321110 11345788899997
Q ss_pred c
Q psy11993 586 I 586 (630)
Q Consensus 586 ~ 586 (630)
.
T Consensus 436 ~ 436 (497)
T 3lvq_E 436 P 436 (497)
T ss_dssp S
T ss_pred C
Confidence 5
No 472
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=95.75 E-value=0.0049 Score=59.97 Aligned_cols=26 Identities=23% Similarity=0.261 Sum_probs=23.5
Q ss_pred CCeEEEEEccCCCChHHHHHHHHHHH
Q psy11993 410 RPFVMAFCGVNGVGKSTNLAKICFWL 435 (630)
Q Consensus 410 ~p~vi~lvGpNGvGKTTllakLA~~l 435 (630)
+|..|+|+|++||||||++..|+..+
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34789999999999999999999877
No 473
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=95.75 E-value=0.0036 Score=58.50 Aligned_cols=26 Identities=27% Similarity=0.307 Sum_probs=18.9
Q ss_pred CCeEEEEEccCCCChHHHHHHHHHHH
Q psy11993 410 RPFVMAFCGVNGVGKSTNLAKICFWL 435 (630)
Q Consensus 410 ~p~vi~lvGpNGvGKTTllakLA~~l 435 (630)
+|.+|+|+|++||||||+++.|+..+
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 34799999999999999999998766
No 474
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=95.73 E-value=0.0052 Score=57.59 Aligned_cols=24 Identities=25% Similarity=0.205 Sum_probs=22.2
Q ss_pred eEEEEEccCCCChHHHHHHHHHHH
Q psy11993 412 FVMAFCGVNGVGKSTNLAKICFWL 435 (630)
Q Consensus 412 ~vi~lvGpNGvGKTTllakLA~~l 435 (630)
.+|+|+|++||||||++..|+..+
T Consensus 12 ~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 12 PNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHh
Confidence 689999999999999999999776
No 475
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=95.73 E-value=0.0049 Score=57.57 Aligned_cols=23 Identities=35% Similarity=0.356 Sum_probs=21.4
Q ss_pred EEEEEccCCCChHHHHHHHHHHH
Q psy11993 413 VMAFCGVNGVGKSTNLAKICFWL 435 (630)
Q Consensus 413 vi~lvGpNGvGKTTllakLA~~l 435 (630)
+|+|+|++||||||++..||..+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 68999999999999999999876
No 476
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=95.72 E-value=0.0061 Score=59.07 Aligned_cols=23 Identities=30% Similarity=0.382 Sum_probs=21.5
Q ss_pred CeEEEEEccCCCChHHHHHHHHH
Q psy11993 411 PFVMAFCGVNGVGKSTNLAKICF 433 (630)
Q Consensus 411 p~vi~lvGpNGvGKTTllakLA~ 433 (630)
|.+|+|+|++||||||+++.|+.
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 47999999999999999999987
No 477
>2obn_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; HET: PG4; 2.30A {Anabaena variabilis}
Probab=95.70 E-value=0.22 Score=52.53 Aligned_cols=184 Identities=16% Similarity=0.173 Sum_probs=104.1
Q ss_pred eEEEEEccC-CCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccCCCcCCcchhhhHhhhccCCCC
Q psy11993 412 FVMAFCGVN-GVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHPAAKHGGREMVQLFEKGYGKD 490 (630)
Q Consensus 412 ~vi~lvGpN-GvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~~~~~tv~env~l~~~~~~~d 490 (630)
..+.++|-- .+||||+...|...++..|.++.++..- ..+ . + .....+..+... +.+..
T Consensus 153 k~i~v~GTD~~VGK~~ts~~L~~~l~~~G~~a~~~~tg--qtg-~--~-~~~~gi~~Dav~--------~df~a------ 212 (349)
T 2obn_A 153 RRVLTVGTDMAIGKMSTSLELHWAAKLRGWRSKFLATG--QTG-V--M-LEGDGVALDAVR--------VDFAA------ 212 (349)
T ss_dssp EEEEEEESSSSSSHHHHHHHHHHHHHHTTCCEEEECCS--HHH-H--H-HHSCSCCGGGSB--------HHHHH------
T ss_pred eEEEEcCCCccccceeHHHHHHHHHHhcCCcEEEEecc--chh-h--h-hhcCCcchhHHH--------HHHHh------
Confidence 678888853 7799999999999999999998885521 111 1 1 111111100000 12211
Q ss_pred HHHHHHHHHHHhhhcCCCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCcc---------HHHHHHHHHH
Q psy11993 491 PAEIAFRAISHARDMHIDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNE---------AVDQLVKFNN 561 (630)
Q Consensus 491 ~~~ia~~ai~~a~~~~~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~D---------av~ql~~f~~ 561 (630)
...+.+...+ ..++|+++|.-+|+...-. ......++...+|+.++++.+|.-|.= .++......+
T Consensus 213 --G~ve~~~~~~-~~~~d~vlVEGqGgl~~P~--~~~t~~ll~g~~p~~vILv~~~~~g~i~~~~~~~~p~l~~~i~t~e 287 (349)
T 2obn_A 213 --GAVEQMVMRY-GKNYDILHIEGQGSLLHPG--STATLPLIRGSQPTQLVLVHRAGQTHNGNNPHVPIPPLPEVIRLYE 287 (349)
T ss_dssp --HHHHHHHHHH-TTTCSEEEECCCCCTTSTT--CCTHHHHHHHHCCSEEEEEEETTCCBCSSCTTSBCCCHHHHHHHHH
T ss_pred --hhHHHHHHHh-ccCCCEEEEeCCCcccCcC--hHhHHHHHHHcCCCeEEEEECCCCceECCCCccCCCCHHHHHHHHH
Confidence 1122222222 2368999999988764211 111234556678887888888743321 2233333344
Q ss_pred HHhhcccCCCCCCeeEEEEcccCCcCccHH-HHHHHHHHhCCcEEEEecCCCCccCCCCCHHHHHHHhh
Q psy11993 562 AMADHSLSDNPHLIDGIVLTKFDTIDDKVG-AAISMTYITGQPIVFVGTGQTYTDLKSLNAKAVVNALM 629 (630)
Q Consensus 562 ~l~~~~~~~~~~~i~gIIlTK~D~~~~~~G-~~ls~~~~~g~PI~fvg~Gq~v~DL~~~~~~~~v~~Ll 629 (630)
.+......+....+-|++++.++..+...- .+-.+...+|+|+. |.-.+.++.+++.|+
T Consensus 288 ~l~~~~~~~~~~~V~Gi~lN~~~~~~~~~~~~~~~ie~~~glPv~---------d~~r~g~~~l~~~~~ 347 (349)
T 2obn_A 288 TVASGGGAFGTVPVVGIALNTAHLDEYAAKEAIAHTIAETGLPCT---------DVVRFGADVLLDAVM 347 (349)
T ss_dssp HHHHTTTTSCCCCEEEEEEECTTSCHHHHHHHHHHHHHHHCSCEE---------CHHHHCSHHHHHHHH
T ss_pred HHHHhhccCCCCcEEEEEEECCCCCHHHHHHHHHHHHHHHCCCEE---------EEecCCHHHHHHHHh
Confidence 443333222346799999998776433332 33345566999987 555567778887765
No 478
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=95.69 E-value=0.0028 Score=60.20 Aligned_cols=92 Identities=15% Similarity=0.133 Sum_probs=46.8
Q ss_pred CCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcccCCc
Q psy11993 507 IDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTI 586 (630)
Q Consensus 507 ~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK~D~~ 586 (630)
+.+.++||+|........ ... ....+.+++|.+.+.. +..+.+..+...+..+.. ......+|+||+|..
T Consensus 82 ~~~~i~Dt~G~~~~~~~~-~~~-----~~~~d~~i~v~d~~~~-~s~~~~~~~~~~i~~~~~---~~~p~ilv~nK~Dl~ 151 (199)
T 3l0i_B 82 IKLQIWDTAGQERFRTIT-SSY-----YRGAHGIIVVYDVTDQ-ESFNNVKQWLQEIDRYAS---ENVNKLLVGNKCDLT 151 (199)
T ss_dssp EEEEEECCTTCTTCCCCS-CC-------CCCSEEEECC-CCCS-HHHHHHHHHHHHHHSCC----CCSEEEEC-CCSSCC
T ss_pred EEEEEEECCCcHhHHHHH-HHH-----hhcCCEEEEEEECCCH-HHHHHHHHHHHHHHHhcc---CCCCEEEEEECccCC
Confidence 456789999954322111 111 1356788888887654 344445555555544332 123446788999964
Q ss_pred Ccc---HHHHHHHHHHhCCcEEEEe
Q psy11993 587 DDK---VGAAISMTYITGQPIVFVG 608 (630)
Q Consensus 587 ~~~---~G~~ls~~~~~g~PI~fvg 608 (630)
..+ .-.+..++...+.|+..++
T Consensus 152 ~~~~v~~~~~~~~~~~~~~~~~~vS 176 (199)
T 3l0i_B 152 TKKVVDYTTAKEFADSLGIPFLETS 176 (199)
T ss_dssp --CCCCSCC-CHHHHTTTCCBCCCC
T ss_pred ccccCCHHHHHHHHHHcCCeEEEEE
Confidence 211 1123345555667765443
No 479
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=95.69 E-value=0.0051 Score=57.35 Aligned_cols=94 Identities=15% Similarity=0.119 Sum_probs=49.7
Q ss_pred CCeeeeccccchhch-----HHHHHHHHhhhhhcCCCeEEEEeccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEc
Q psy11993 507 IDVVLIDTAGRMQDN-----EPLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLT 581 (630)
Q Consensus 507 ~D~vlIDTaGr~~~~-----~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlT 581 (630)
..+.++||+|..... ..+...+. ....++.+++|.++... +....+...+.. ......+|.|
T Consensus 54 ~~~~l~Dt~G~~~~~~~~~~~~~~~~~~---~~~~~~~~i~v~d~~~~----~~~~~~~~~~~~------~~~piilv~n 120 (188)
T 2wjg_A 54 EKFKVVDLPGVYSLTANSIDEIIARDYI---INEKPDLVVNIVDATAL----ERNLYLTLQLME------MGANLLLALN 120 (188)
T ss_dssp EEEEEEECCCCSCCSSSSHHHHHHHHHH---HHHCCSEEEEEEEGGGH----HHHHHHHHHHHT------TTCCEEEEEE
T ss_pred cEEEEEECCCcCccccccHHHHHHHHHH---hccCCCEEEEEecchhH----HHHHHHHHHHHh------cCCCEEEEEE
Confidence 456789999975432 22322222 11356788888887642 222222222221 1124468889
Q ss_pred ccCCcCcc-H-HHHHHHHHHhCCcEEEEe--cCCCC
Q psy11993 582 KFDTIDDK-V-GAAISMTYITGQPIVFVG--TGQTY 613 (630)
Q Consensus 582 K~D~~~~~-~-G~~ls~~~~~g~PI~fvg--~Gq~v 613 (630)
|+|..... + -.+..++...+.|+..++ +|+.+
T Consensus 121 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 156 (188)
T 2wjg_A 121 KMDLAKSLGIEIDVDKLEKILGVKVVPLSAAKKMGI 156 (188)
T ss_dssp CHHHHHHTTCCCCHHHHHHHHTSCEEECBGGGTBSH
T ss_pred hhhccccccchHHHHHHHHHhCCCeEEEEecCCCCH
Confidence 99964111 0 123455666788888776 44444
No 480
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=95.67 E-value=0.0054 Score=60.00 Aligned_cols=25 Identities=24% Similarity=0.312 Sum_probs=22.8
Q ss_pred CeEEEEEccCCCChHHHHHHHHHHH
Q psy11993 411 PFVMAFCGVNGVGKSTNLAKICFWL 435 (630)
Q Consensus 411 p~vi~lvGpNGvGKTTllakLA~~l 435 (630)
+.+|+|+|+.||||||++..|+..+
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4789999999999999999999765
No 481
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=95.67 E-value=0.0067 Score=58.94 Aligned_cols=25 Identities=24% Similarity=0.342 Sum_probs=23.1
Q ss_pred CeEEEEEccCCCChHHHHHHHHHHH
Q psy11993 411 PFVMAFCGVNGVGKSTNLAKICFWL 435 (630)
Q Consensus 411 p~vi~lvGpNGvGKTTllakLA~~l 435 (630)
+..|+|+|+.||||||++..|+..+
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4789999999999999999999877
No 482
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=95.67 E-value=0.017 Score=66.96 Aligned_cols=22 Identities=27% Similarity=0.279 Sum_probs=20.6
Q ss_pred EEEEEccCCCChHHHHHHHHHH
Q psy11993 413 VMAFCGVNGVGKSTNLAKICFW 434 (630)
Q Consensus 413 vi~lvGpNGvGKTTllakLA~~ 434 (630)
.|+|||..++||||++..|.+.
T Consensus 53 ~I~vvG~~saGKSSllnaL~g~ 74 (772)
T 3zvr_A 53 QIAVVGGQSAGKSSVLENFVGR 74 (772)
T ss_dssp EEEEEECTTTCHHHHHHHHHSS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 7899999999999999999974
No 483
>2nut_C Vesicle-trafficking protein SEC22B; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_C 3egd_C 3egx_C 1ifq_A
Probab=95.66 E-value=0.059 Score=52.14 Aligned_cols=114 Identities=12% Similarity=0.237 Sum_probs=75.2
Q ss_pred CcceEEEeecC--ceEEEEeccCCCC--C-CchHHHHHHHhhhcc---ccCCCceeecCeEEEEEEeccccEEEEEEecc
Q psy11993 1 MLDFFTIFSKG--GIVLWYFQSASQI--F-TPSLNALIKSVILQE---RGGNQVFEHNGLVLKHKLDNEFDLVFVVGFQK 72 (630)
Q Consensus 1 Mld~~~i~t~g--G~vLw~~~~~~~~--~-~~~in~li~~~~lee---r~~~~~~~~~~~~l~w~~~n~~~lvfv~~yq~ 72 (630)
|+ .++.+.+| |+||=.....+.- + ...+...++.++=.= -....+|.+++|+++|...| |++|+++--.
T Consensus 2 Mi-~ya~IaR~~d~~iLa~~~d~~~~~~~~~~~~~~~a~~il~ki~~~~~~r~s~~~~~y~fhy~~~~--gl~~l~i~d~ 78 (196)
T 2nut_C 2 MV-LLTMIARVADGLPLAASMQEDEQSGRDLQQYQSQAKQLFRKLNEQSPTRCTLEAGAMTFHYIIEQ--GVCYLVLCEA 78 (196)
T ss_dssp CC-CCEEEEETTTCCEEEEECCCC-----CHHHHHHHHHHHHHHCCTTSCSEEEEEETTEEEEEEEET--TEEEEEEEET
T ss_pred ce-EEEEEEEcCCCcEEEEeecccccccccHHHHHHHHHHHHHhcCCCCCCeEEEEeCCEEEEEEeCC--CeEEEEEEcC
Confidence 66 34566888 9999876532111 1 123556666655221 11234699999999987754 6899999888
Q ss_pred ccchhcHHHHHHHHHHHHHHhhhhhhcCCCcceecCccHHHHHHHHHH
Q psy11993 73 ILQLSYVDKLLDDVHLEFRDKYKNELGSDMHLYDYDFESTYNVLLKEA 120 (630)
Q Consensus 73 ~l~l~y~d~ll~~~~~~f~~~~~~~l~~~~~~~~~~f~~~f~~~l~~~ 120 (630)
-..-...=.||+.|+..|...|+..... ....|.|. .|+..|++.
T Consensus 79 ~yp~r~af~fL~~i~~~F~~~~~~~~~~--~~~~~~~~-~f~~~l~~~ 123 (196)
T 2nut_C 79 AFPKKLAFAYLEDLHSEFDEQHGKKVPT--VSRPYSFI-EFDTFIQKT 123 (196)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHTTTTTT--CCSTTTTG-GGHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHHHHhccchhcc--ccCCCchH-HHHHHHHHH
Confidence 7777778889999999999999864421 11356664 677666553
No 484
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=95.65 E-value=0.043 Score=69.66 Aligned_cols=118 Identities=18% Similarity=0.213 Sum_probs=0.0
Q ss_pred hccCCCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCCccHHHHHHHHHhhhcccCCCcCCcchhhhHhhhc
Q psy11993 406 KKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHPAAKHGGREMVQLFEK 485 (630)
Q Consensus 406 i~~g~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R~ga~eQLr~~~~~l~~~~~~~~~tv~env~l~~~ 485 (630)
+++| +++.|+||+|+||||++..++.-...+++++.++++.- +..++. +..++.. +.-+.-
T Consensus 1424 i~~g--~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~----~~~~l~--a~~~G~d-----------l~~l~v 1484 (2050)
T 3cmu_A 1424 LPMG--RIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEH----ALDPIY--ARKLGVD-----------IDNLLC 1484 (2050)
T ss_dssp EETT--SEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTS----CCCHHH--HHHTTCC-----------TTTCEE
T ss_pred ccCC--eEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEccc----ccCHHH--HHHcCCC-----------chhcee
Q ss_pred cCCCCHHHHHHHHHHHhhhcCCCeeeeccccchhch-------------------HHHHHHHHhhhhhcCCCeEEEE
Q psy11993 486 GYGKDPAEIAFRAISHARDMHIDVVLIDTAGRMQDN-------------------EPLMRALAKLVKVNQPDLLLFV 543 (630)
Q Consensus 486 ~~~~d~~~ia~~ai~~a~~~~~D~vlIDTaGr~~~~-------------------~~L~~aL~kl~~~~~Pd~VLlV 543 (630)
............+...++...+++|+||.-...... ..++..|......... .+|++
T Consensus 1485 ~~~~~~E~~l~~~~~lvr~~~~~lVVIDsi~al~p~~~~~g~~~~~~~~~~~R~lsqlL~~L~~~~~~~~v-~VI~t 1560 (2050)
T 3cmu_A 1485 SQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNT-LLIFI 1560 (2050)
T ss_dssp ECCSSHHHHHHHHHHHHHHTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTC-EEEEE
T ss_pred ecCChHHHHHHHHHHHHhcCCCCEEEEcChhHhcccccccccccccccchHHHHHHHHHHHHHHHHHhCCc-EEEEE
No 485
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=95.64 E-value=0.013 Score=56.72 Aligned_cols=38 Identities=18% Similarity=0.123 Sum_probs=33.1
Q ss_pred eEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEee--ccc
Q psy11993 412 FVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAA--CDT 449 (630)
Q Consensus 412 ~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~--~Dt 449 (630)
.+++++||.|+||||.+..++..+...+.+|+++. .|+
T Consensus 9 ~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k~~~d~ 48 (191)
T 1xx6_A 9 WVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFKPEIDN 48 (191)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEEC---
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccCc
Confidence 89999999999999999999999988899999985 554
No 486
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=95.63 E-value=0.013 Score=60.77 Aligned_cols=37 Identities=22% Similarity=0.215 Sum_probs=32.7
Q ss_pred eEEEEEccCCCChHHHHHHHHHHHH-hcCCeEEEeecc
Q psy11993 412 FVMAFCGVNGVGKSTNLAKICFWLI-ENNLNVLIAACD 448 (630)
Q Consensus 412 ~vi~lvGpNGvGKTTllakLA~~l~-~~ggkVlI~~~D 448 (630)
..+.|.||+|+|||+++..||..+. ..+.+|.++.+.
T Consensus 153 ~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~ 190 (308)
T 2qgz_A 153 KGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFP 190 (308)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHH
Confidence 6789999999999999999999888 888888877654
No 487
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=95.61 E-value=0.0071 Score=59.63 Aligned_cols=26 Identities=27% Similarity=0.201 Sum_probs=23.5
Q ss_pred CCeEEEEEccCCCChHHHHHHHHHHH
Q psy11993 410 RPFVMAFCGVNGVGKSTNLAKICFWL 435 (630)
Q Consensus 410 ~p~vi~lvGpNGvGKTTllakLA~~l 435 (630)
++.+|+|+|++||||||+++.|+..+
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 34899999999999999999999866
No 488
>4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A*
Probab=95.60 E-value=0.27 Score=57.69 Aligned_cols=35 Identities=11% Similarity=0.074 Sum_probs=30.7
Q ss_pred eEEEEEcc-CCCChHHHHHHHHHHHHhc-----CCeEEEee
Q psy11993 412 FVMAFCGV-NGVGKSTNLAKICFWLIEN-----NLNVLIAA 446 (630)
Q Consensus 412 ~vi~lvGp-NGvGKTTllakLA~~l~~~-----ggkVlI~~ 446 (630)
..++|.|. +||||||+..-||..+... +.+|...-
T Consensus 35 ~~l~I~gt~s~vGKT~vt~gL~r~l~~~~~~~~G~~V~~fK 75 (831)
T 4a0g_A 35 PTYLIWSANTSLGKTLVSTGIAASFLLQQPSSSATKLLYLK 75 (831)
T ss_dssp CEEEEEESSSSSCHHHHHHHHHHHHHSCSSCCTTCEEEEEE
T ss_pred ccEEEEECCCCCCHHHHHHHHHHHHHhcccccCCceEEEEc
Confidence 57899999 6999999999999999988 88887764
No 489
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=95.59 E-value=0.011 Score=61.01 Aligned_cols=78 Identities=15% Similarity=0.152 Sum_probs=40.8
Q ss_pred CCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcccCCc
Q psy11993 507 IDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTI 586 (630)
Q Consensus 507 ~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK~D~~ 586 (630)
+.+.++||+|.........+.+... ....++.+++|.|++... ..+.+..+...+..+... .+...-.+++||+|..
T Consensus 52 ~~l~i~Dt~G~~~~~~~~~~~~~~~-~~~~ad~vi~V~D~t~~~-s~~~l~~~~~~l~~l~~~-~~~~piilv~NK~Dl~ 128 (307)
T 3r7w_A 52 MTLNLWDCGGQDVFMENYFTKQKDH-IFQMVQVLIHVFDVESTE-VLKDIEIFAKALKQLRKY-SPDAKIFVLLHKMDLV 128 (307)
T ss_dssp EEEEEEEECCSHHHHHHHHTTTHHH-HHTTCSEEEEEEETTCSC-HHHHHHHHHHHHHHHHHH-CTTCEEEEEEECGGGS
T ss_pred eEEEEEECCCcHHHhhhhhhhHHHH-HhccCCEEEEEEECCChh-hHHHHHHHHHHHHHHHHh-CCCCeEEEEEeccccc
Confidence 4677999999654321111111100 114678889898887653 333333333333322111 1223557888999986
Q ss_pred C
Q psy11993 587 D 587 (630)
Q Consensus 587 ~ 587 (630)
.
T Consensus 129 ~ 129 (307)
T 3r7w_A 129 Q 129 (307)
T ss_dssp C
T ss_pred c
Confidence 3
No 490
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=95.58 E-value=0.03 Score=59.57 Aligned_cols=23 Identities=26% Similarity=0.288 Sum_probs=20.6
Q ss_pred EEEEEccCCCChHHHHHHHHHHH
Q psy11993 413 VMAFCGVNGVGKSTNLAKICFWL 435 (630)
Q Consensus 413 vi~lvGpNGvGKTTllakLA~~l 435 (630)
.++|||++||||||+++.|++.-
T Consensus 3 ~v~IVG~pnvGKSTL~n~L~~~~ 25 (368)
T 2dby_A 3 AVGIVGLPNVGKSTLFNALTRAN 25 (368)
T ss_dssp SEEEECCSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47999999999999999998763
No 491
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=95.56 E-value=0.072 Score=59.62 Aligned_cols=84 Identities=20% Similarity=0.050 Sum_probs=56.4
Q ss_pred CCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcccCCc
Q psy11993 507 IDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTI 586 (630)
Q Consensus 507 ~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK~D~~ 586 (630)
+.+=||||||....-....++|. -.|-.++|.++..|-.+-.. ..|.++. .+. -...+++||+|..
T Consensus 100 ~~iNlIDTPGHvDF~~Ev~raL~------~~DgAvlVvda~~GV~~qT~-~v~~~a~-~~~------lp~i~fINK~Dr~ 165 (548)
T 3vqt_A 100 RVVNLLDTPGHQDFSEDTYRVLT------AVDSALVVIDAAKGVEAQTR-KLMDVCR-MRA------TPVMTFVNKMDRE 165 (548)
T ss_dssp EEEEEECCCCGGGCSHHHHHHHH------SCSEEEEEEETTTBSCHHHH-HHHHHHH-HTT------CCEEEEEECTTSC
T ss_pred EEEEEEeCCCcHHHHHHHHHHHH------hcCceEEEeecCCCcccccH-HHHHHHH-HhC------CceEEEEecccch
Confidence 34448999999988888888887 23678889999999875432 3344333 221 3446789999986
Q ss_pred CccHHHHHHHHH-HhCCcE
Q psy11993 587 DDKVGAAISMTY-ITGQPI 604 (630)
Q Consensus 587 ~~~~G~~ls~~~-~~g~PI 604 (630)
....-.++..+. ..+..+
T Consensus 166 ~ad~~~~~~~i~~~l~~~~ 184 (548)
T 3vqt_A 166 ALHPLDVMADIEQHLQIEC 184 (548)
T ss_dssp CCCHHHHHHHHHHHHTSEE
T ss_pred hcchhHhhhhhhhhcCCce
Confidence 666666665444 455443
No 492
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=95.54 E-value=0.0093 Score=62.45 Aligned_cols=34 Identities=18% Similarity=0.200 Sum_probs=27.8
Q ss_pred CeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeeccc
Q psy11993 411 PFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDT 449 (630)
Q Consensus 411 p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt 449 (630)
+.+|+|+||+||||||+...||..+. ..++++|.
T Consensus 5 ~~~i~i~GptGsGKTtla~~La~~l~-----~~iis~Ds 38 (323)
T 3crm_A 5 PPAIFLMGPTAAGKTDLAMALADALP-----CELISVDS 38 (323)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSC-----EEEEEECT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC-----CcEEeccc
Confidence 36899999999999999999998762 45666665
No 493
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=95.48 E-value=0.0084 Score=66.75 Aligned_cols=42 Identities=19% Similarity=0.263 Sum_probs=35.3
Q ss_pred CCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCC
Q psy11993 410 RPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFR 451 (630)
Q Consensus 410 ~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R 451 (630)
.|.+|+|+|++|+||||+.++|+..+...+..+.++..|.+|
T Consensus 34 ~~~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D~~r 75 (520)
T 2axn_A 34 SPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEYR 75 (520)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecccHHH
Confidence 457999999999999999999999887777677777777544
No 494
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=95.47 E-value=0.0061 Score=62.04 Aligned_cols=37 Identities=22% Similarity=0.151 Sum_probs=27.5
Q ss_pred CeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeecccCC
Q psy11993 411 PFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFR 451 (630)
Q Consensus 411 p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt~R 451 (630)
|.+|+|+|++||||||+++.|+..+ ..+.++..|.+|
T Consensus 2 ~~~I~l~G~~GsGKST~a~~L~~~~----~~~~~i~~D~~r 38 (301)
T 1ltq_A 2 KKIILTIGCPGSGKSTWAREFIAKN----PGFYNINRDDYR 38 (301)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHS----TTEEEECHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhC----CCcEEecccHHH
Confidence 4689999999999999999998743 124455555543
No 495
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=95.47 E-value=0.011 Score=61.56 Aligned_cols=35 Identities=20% Similarity=0.223 Sum_probs=27.9
Q ss_pred CCeEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeeccc
Q psy11993 410 RPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDT 449 (630)
Q Consensus 410 ~p~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~Dt 449 (630)
.|.+|+|+||+||||||++..||..+. ..++.+|.
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~~~-----~~iis~Ds 43 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKILP-----VELISVDS 43 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHSC-----EEEEECCT
T ss_pred CCcEEEEECCCccCHHHHHHHHHHhCC-----CcEEeccc
Confidence 357999999999999999999997752 34566664
No 496
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=95.45 E-value=0.14 Score=53.66 Aligned_cols=40 Identities=18% Similarity=0.138 Sum_probs=30.2
Q ss_pred CCeEEEE--EccCCCChHHHHHHHHHHHHhc------CCeEEEeeccc
Q psy11993 410 RPFVMAF--CGVNGVGKSTNLAKICFWLIEN------NLNVLIAACDT 449 (630)
Q Consensus 410 ~p~vi~l--vGpNGvGKTTllakLA~~l~~~------ggkVlI~~~Dt 449 (630)
.+..+.| +||.|+||||++..++..+... +..+..+.|..
T Consensus 49 ~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (412)
T 1w5s_A 49 SDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFN 96 (412)
T ss_dssp CCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGG
T ss_pred CCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCC
Confidence 3467778 9999999999999999877553 44566666643
No 497
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=95.44 E-value=0.17 Score=57.32 Aligned_cols=88 Identities=25% Similarity=0.273 Sum_probs=51.3
Q ss_pred CCeeeeccccchhchHHHHHHHHhhhhhcCCCeEEEEeccccCccHHHHHHHHHHHHhhcccCCCCCCeeEEEEcccCCc
Q psy11993 507 IDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTI 586 (630)
Q Consensus 507 ~D~vlIDTaGr~~~~~~L~~aL~kl~~~~~Pd~VLlV~E~~~g~Dav~ql~~f~~~l~~~~~~~~~~~i~gIIlTK~D~~ 586 (630)
+.+.++||||.........+.+. ..|.+++|.++..|..... ...+..... + .....+++||+|..
T Consensus 73 ~~inliDTPGh~dF~~ev~r~l~------~aD~aILVVDa~~gv~~qt-~~~~~~a~~-~------~ipiIvviNKiDl~ 138 (600)
T 2ywe_A 73 YKLHLIDTPGHVDFSYEVSRALA------ACEGALLLIDASQGIEAQT-VANFWKAVE-Q------DLVIIPVINKIDLP 138 (600)
T ss_dssp EEEEEECCCCSGGGHHHHHHHHH------TCSEEEEEEETTTBCCHHH-HHHHHHHHH-T------TCEEEEEEECTTST
T ss_pred EEEEEEECCCcHhHHHHHHHHHH------hCCEEEEEEECCCCccHHH-HHHHHHHHH-C------CCCEEEEEeccCcc
Confidence 45669999998766555555554 4578888999988865432 233333321 1 12357889999976
Q ss_pred CccHHHHHH-HHHHhCC---cEEEEe
Q psy11993 587 DDKVGAAIS-MTYITGQ---PIVFVG 608 (630)
Q Consensus 587 ~~~~G~~ls-~~~~~g~---PI~fvg 608 (630)
....-.+.. +....+. ++.+++
T Consensus 139 ~a~~~~v~~el~~~lg~~~~~vi~vS 164 (600)
T 2ywe_A 139 SADVDRVKKQIEEVLGLDPEEAILAS 164 (600)
T ss_dssp TCCHHHHHHHHHHTSCCCGGGCEECB
T ss_pred ccCHHHHHHHHHHhhCCCcccEEEEE
Confidence 444333332 3333455 355544
No 498
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=95.43 E-value=0.0076 Score=56.09 Aligned_cols=22 Identities=23% Similarity=0.292 Sum_probs=20.6
Q ss_pred eEEEEEccCCCChHHHHHHHHH
Q psy11993 412 FVMAFCGVNGVGKSTNLAKICF 433 (630)
Q Consensus 412 ~vi~lvGpNGvGKTTllakLA~ 433 (630)
..++|+|++||||||++..|++
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~ 26 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAG 26 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 7899999999999999999975
No 499
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=95.40 E-value=0.039 Score=57.92 Aligned_cols=33 Identities=18% Similarity=0.248 Sum_probs=26.2
Q ss_pred eEEEEEccCCCChHHHHHHHHHHHHhcCCeEEEeec
Q psy11993 412 FVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAAC 447 (630)
Q Consensus 412 ~vi~lvGpNGvGKTTllakLA~~l~~~ggkVlI~~~ 447 (630)
..++|+||+|+||||++..||..+ +..+..++|
T Consensus 52 ~~vll~GppGtGKT~la~~ia~~~---~~~~~~~~~ 84 (363)
T 3hws_A 52 SNILLIGPTGSGKTLLAETLARLL---DVPFTMADA 84 (363)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHT---TCCEEEEEH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc---CCCEEEech
Confidence 578999999999999999999887 344444443
No 500
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=95.39 E-value=0.039 Score=62.52 Aligned_cols=46 Identities=28% Similarity=0.357 Sum_probs=32.3
Q ss_pred eEEEEEccCCCChHHHHHHHHHHHHh----cCCeEEEeecccCCccHHHHHHH
Q psy11993 412 FVMAFCGVNGVGKSTNLAKICFWLIE----NNLNVLIAACDTFRAGAVEQLRT 460 (630)
Q Consensus 412 ~vi~lvGpNGvGKTTllakLA~~l~~----~ggkVlI~~~Dt~R~ga~eQLr~ 460 (630)
.+++|.|++|+||||+++.|...+.. .+.+|++. +.|-+ |..++..
T Consensus 165 ~~~vi~G~pGTGKTt~l~~ll~~l~~~~~~~~~~vll~-APTg~--AA~~L~e 214 (608)
T 1w36_D 165 RISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLA-APTGK--AAARLTE 214 (608)
T ss_dssp SEEEEECCTTSTHHHHHHHHHHHHHHTCSSCCCCEEEE-BSSHH--HHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHHHHhhhcCCCeEEEE-eCChh--HHHHHHH
Confidence 58999999999999999999887763 23466654 44533 3345543
Done!