Your job contains 1 sequence.
>psy11993
MLDFFTIFSKGGIVLWYFQSASQIFTPSLNALIKSVILQERGGNQVFEHNGLVLKHKLDN
EFDLVFVVGFQKILQLSYVDKLLDDVHLEFRDKYKNELGSDMHLYDYDFESTYNVLLKEA
EEWSKVQACIPKQMRTFEESSKSKKTIASMIIDKNKKEEKSVPSKKKGKAVETKVEPVTP
PSPVQNGDAGIEEDIIMINRQKLAMKMGSPKNKTKPKTPKANAKEGKKPRIWELSGDQRD
LSTLEYTKDKPSDSNALNITPDTHLVGKMVGGIKDLEVESSSEEESSDDEEDVRAETSHV
SAKKANGKANKGMFSLFRGLVGSKNLTKSDMKPILEKMKDHLIAKNVAADIAVKLCDSVA
LKLEGKVLGTFESVANTVKSTLTDALVQILSPKRRVDILRDALEAKKQGRPFVMAFCGVN
GVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHPAAKHGGREMV
QLFEKGYGKDPAEIAFRAISHARDMHIDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLL
LFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTIDDKVGAAISMTYIT
GQPIVFVGTGQTYTDLKSLNAKAVVNALMK
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy11993
(630 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
UNIPROTKB|P08240 - symbol:SRPR "Signal recognition partic... 1677 1.4e-172 1
UNIPROTKB|F1NXV4 - symbol:SRPR "Uncharacterized protein" ... 1671 6.2e-172 1
MGI|MGI:1914648 - symbol:Srpr "signal recognition particl... 1671 6.2e-172 1
RGD|1311504 - symbol:Srpr "signal recognition particle re... 1670 8.0e-172 1
UNIPROTKB|F1S754 - symbol:SRPR "Uncharacterized protein" ... 1669 1.0e-171 1
UNIPROTKB|Q3MHE8 - symbol:SRPR "Signal recognition partic... 1660 9.1e-171 1
UNIPROTKB|P06625 - symbol:SRPR "Signal recognition partic... 1642 7.4e-169 1
UNIPROTKB|F1PLH3 - symbol:SRPR "Signal recognition partic... 1617 3.3e-166 1
UNIPROTKB|J9NTJ9 - symbol:SRPR "Signal recognition partic... 1613 8.7e-166 1
FB|FBgn0010391 - symbol:Gtp-bp "GTP-binding protein" spec... 1580 2.7e-162 1
UNIPROTKB|J9P788 - symbol:SRPR "Signal recognition partic... 1529 7.0e-157 1
UNIPROTKB|F1MNJ2 - symbol:SRPR "Signal recognition partic... 1490 9.5e-153 1
ZFIN|ZDB-GENE-030219-11 - symbol:srpr "signal recognition... 1386 9.9e-142 1
WB|WBGene00009521 - symbol:F38A1.8 species:6239 "Caenorha... 1325 2.9e-135 1
TAIR|locus:2118701 - symbol:AT4G30600 species:3702 "Arabi... 957 2.1e-111 2
DICTYBASE|DDB_G0277377 - symbol:srpR "signal recognition ... 842 2.1e-107 2
ASPGD|ASPL0000006202 - symbol:AN6627 species:162425 "Emer... 855 1.8e-85 1
POMBASE|SPBC3B9.03 - symbol:SPBC3B9.03 "signal recognitio... 679 5.9e-78 2
SGD|S000002700 - symbol:SRP101 "Signal recognition partic... 657 1.8e-64 1
CGD|CAL0003010 - symbol:orf19.3952 species:5476 "Candida ... 611 1.3e-59 1
TIGR_CMR|CJE_0809 - symbol:CJE_0809 "signal recognition p... 279 7.7e-22 1
UNIPROTKB|P66844 - symbol:ffh "Signal recognition particl... 277 2.9e-21 1
TIGR_CMR|BA_3985 - symbol:BA_3985 "signal recognition par... 257 2.9e-21 1
UNIPROTKB|Q97QD2 - symbol:ffh "Signal recognition particl... 274 6.2e-21 1
TIGR_CMR|CBU_0450 - symbol:CBU_0450 "signal recognition p... 264 5.2e-20 1
TIGR_CMR|CPS_4073 - symbol:CPS_4073 "signal recognition p... 263 6.8e-20 1
TIGR_CMR|GSU_0642 - symbol:GSU_0642 "signal recognition p... 262 7.9e-20 1
TIGR_CMR|SO_1356 - symbol:SO_1356 "signal recognition par... 259 1.8e-19 1
TIGR_CMR|VC_0560 - symbol:VC_0560 "signal recognition par... 253 4.9e-19 2
TIGR_CMR|SPO_1339 - symbol:SPO_1339 "signal recognition p... 251 6.3e-19 1
TIGR_CMR|APH_1227 - symbol:APH_1227 "signal recognition p... 235 7.0e-19 1
TIGR_CMR|NSE_0545 - symbol:NSE_0545 "signal recognition p... 232 1.5e-18 1
TIGR_CMR|APH_0349 - symbol:APH_0349 "signal recognition p... 249 2.4e-18 1
TIGR_CMR|BA_3983 - symbol:BA_3983 "signal recognition par... 247 4.0e-18 1
TIGR_CMR|CHY_1442 - symbol:CHY_1442 "signal recognition p... 227 5.1e-18 1
NCBI_NP|NP_355632.2 - symbol:ffh "signal recognition part... 247 6.6e-18 1
TIGR_CMR|CJE_1340 - symbol:CJE_1340 "signal recognition p... 223 1.4e-17 1
UNIPROTKB|P0AGD7 - symbol:ffh species:83333 "Escherichia ... 240 2.6e-17 1
GENEDB_PFALCIPARUM|PF14_0477 - symbol:PF14_0477 "signal r... 238 5.9e-17 1
UNIPROTKB|Q8IKX4 - symbol:PF14_0477 "Signal recognition p... 238 5.9e-17 1
TAIR|locus:2037803 - symbol:ATHSRP54A "signal recognition... 237 6.7e-17 1
TIGR_CMR|CHY_1434 - symbol:CHY_1434 "signal recognition p... 234 1.1e-16 1
UNIPROTKB|P83749 - symbol:ftsY "Signal recognition partic... 220 1.5e-16 1
TAIR|locus:2150620 - symbol:CPSRP54 "chloroplast signal r... 235 1.7e-16 1
TIGR_CMR|CPS_0157 - symbol:CPS_0157 "signal recognition p... 233 1.9e-16 1
SGD|S000006292 - symbol:SRP54 "Signal recognition particl... 234 2.0e-16 1
TAIR|locus:2028563 - symbol:AT1G48900 species:3702 "Arabi... 233 2.1e-16 1
TIGR_CMR|ECH_1111 - symbol:ECH_1111 "signal recognition p... 221 2.3e-16 1
TIGR_CMR|ECH_0475 - symbol:ECH_0475 "signal recognition p... 230 3.3e-16 1
TIGR_CMR|VC_0147 - symbol:VC_0147 "signal recognition par... 227 4.3e-16 1
UNIPROTKB|P10121 - symbol:ftsY "SRP receptor" species:833... 226 1.3e-15 1
UNIPROTKB|O07347 - symbol:ffh "Signal recognition particl... 224 1.4e-15 1
CGD|CAL0003314 - symbol:SRP54 species:5476 "Candida albic... 220 7.6e-15 1
TIGR_CMR|CBU_1903 - symbol:CBU_1903 "signal recognition p... 209 1.8e-14 1
TIGR_CMR|SO_4586 - symbol:SO_4586 "signal recognition par... 215 2.2e-14 1
TIGR_CMR|SPO_3246 - symbol:SPO_3246 "signal recognition p... 214 2.9e-14 1
TAIR|locus:2157809 - symbol:AT5G49500 "AT5G49500" species... 210 7.5e-14 1
UNIPROTKB|E1C6G6 - symbol:SRP54 "Uncharacterized protein"... 207 1.7e-13 1
UNIPROTKB|P66842 - symbol:ftsY "Signal recognition partic... 205 1.8e-13 1
TIGR_CMR|NSE_0540 - symbol:NSE_0540 "signal recognition p... 198 1.3e-12 1
TIGR_CMR|GSU_1132 - symbol:GSU_1132 "signal recognition p... 188 8.0e-12 1
DICTYBASE|DDB_G0275455 - symbol:srp54 "signal recognition... 192 8.7e-12 1
UNIPROTKB|Q97QH0 - symbol:ftsY "Signal recognition partic... 189 1.1e-11 1
POMBASE|SPCC188.06c - symbol:srp54 "signal recognition pa... 187 2.9e-11 1
ZFIN|ZDB-GENE-040426-818 - symbol:srp54 "signal recogniti... 162 1.5e-08 1
RGD|2323636 - symbol:Fam177a1 "family with sequence simil... 158 7.4e-08 2
UNIPROTKB|G3V4F7 - symbol:SRP54 "Signal recognition parti... 153 1.1e-07 1
UNIPROTKB|Q2T9U1 - symbol:SRP54 "Signal recognition parti... 161 1.2e-07 2
UNIPROTKB|P61010 - symbol:SRP54 "Signal recognition parti... 161 1.2e-07 2
UNIPROTKB|P61011 - symbol:SRP54 "Signal recognition parti... 161 1.2e-07 2
UNIPROTKB|F2Z5M9 - symbol:SRP54 "Uncharacterized protein"... 161 1.2e-07 2
UNIPROTKB|Q4R965 - symbol:SRP54 "Signal recognition parti... 161 1.2e-07 2
UNIPROTKB|Q5R4R6 - symbol:SRP54 "Signal recognition parti... 161 1.2e-07 2
RGD|621390 - symbol:Srp54 "signal recognition particle 54... 158 2.5e-07 2
TIGR_CMR|CHY_1010 - symbol:CHY_1010 "flagellar biosynthes... 97 5.5e-07 2
WB|WBGene00009012 - symbol:F21D5.7 species:6239 "Caenorha... 146 8.3e-07 1
FB|FBgn0010747 - symbol:Srp54k "Signal recognition partic... 146 2.8e-06 1
TIGR_CMR|CJE_0061 - symbol:CJE_0061 "flagellar biosynthet... 98 1.2e-05 2
UNIPROTKB|Q3V8C7 - symbol:flhF "Flagellar biogenesis prot... 112 2.5e-05 2
TIGR_CMR|GSU_3055 - symbol:GSU_3055 "flagellar biosynthet... 112 2.5e-05 2
UNIPROTKB|Q722L6 - symbol:LMOf2365_0717 "Putative flagell... 121 0.00033 1
UNIPROTKB|Q8ECD1 - symbol:flhF "Flagellar polar localizat... 98 0.00042 2
TIGR_CMR|SO_3212 - symbol:SO_3212 "flagellar biosynthetic... 98 0.00042 2
>UNIPROTKB|P08240 [details] [associations]
symbol:SRPR "Signal recognition particle receptor subunit
alpha" species:9606 "Homo sapiens" [GO:0003924 "GTPase activity"
evidence=IEA] [GO:0005047 "signal recognition particle binding"
evidence=IEA] [GO:0005785 "signal recognition particle receptor
complex" evidence=IEA] [GO:0005525 "GTP binding" evidence=IEA]
[GO:0005783 "endoplasmic reticulum" evidence=TAS] [GO:0006613
"cotranslational protein targeting to membrane" evidence=TAS]
[GO:0016021 "integral to membrane" evidence=TAS] [GO:0005789
"endoplasmic reticulum membrane" evidence=TAS] [GO:0006412
"translation" evidence=TAS] [GO:0006614 "SRP-dependent
cotranslational protein targeting to membrane" evidence=TAS]
[GO:0006987 "activation of signaling protein activity involved in
unfolded protein response" evidence=TAS] [GO:0010467 "gene
expression" evidence=TAS] [GO:0030968 "endoplasmic reticulum
unfolded protein response" evidence=TAS] [GO:0044267 "cellular
protein metabolic process" evidence=TAS] Reactome:REACT_71
Reactome:REACT_17015 InterPro:IPR000897 InterPro:IPR003593
InterPro:IPR007222 InterPro:IPR011012 InterPro:IPR013822
Pfam:PF00448 Pfam:PF02881 Pfam:PF04086 PROSITE:PS00300
SMART:SM00382 SMART:SM00962 SMART:SM00963 GO:GO:0005525
GO:GO:0016021 Reactome:REACT_116125 GO:GO:0006987 EMBL:CH471065
GO:GO:0006412 GO:GO:0003924 SUPFAM:SSF64356 eggNOG:COG0552
GO:GO:0006614 SUPFAM:SSF47364 KO:K13431 GO:GO:0005785 GO:GO:0005047
PDB:2GO5 PDBsum:2GO5 PDB:2FH5 PDBsum:2FH5 CTD:6734
HOGENOM:HOG000201671 HOVERGEN:HBG047566 OrthoDB:EOG4W0XCP
EMBL:X06272 EMBL:AK312377 EMBL:AP001318 EMBL:BC001162 EMBL:BC009110
EMBL:BC013583 IPI:IPI00385267 PIR:A29440 RefSeq:NP_001171313.1
RefSeq:NP_003130.2 UniGene:Hs.368376 ProteinModelPortal:P08240
SMR:P08240 IntAct:P08240 MINT:MINT-1404634 STRING:P08240
PhosphoSite:P08240 DMDM:20455516 PaxDb:P08240 PRIDE:P08240
DNASU:6734 Ensembl:ENST00000332118 GeneID:6734 KEGG:hsa:6734
UCSC:uc001qdh.3 GeneCards:GC11M126132 HGNC:HGNC:11307 MIM:182180
neXtProt:NX_P08240 PharmGKB:PA36131 InParanoid:P08240 OMA:KEGSDGP
ChiTaRS:SRPR EvolutionaryTrace:P08240 GenomeRNAi:6734 NextBio:26272
ArrayExpress:P08240 Bgee:P08240 CleanEx:HS_SRPR
Genevestigator:P08240 GermOnline:ENSG00000182934 Uniprot:P08240
Length = 638
Score = 1677 (595.4 bits), Expect = 1.4e-172, P = 1.4e-172
Identities = 364/650 (56%), Positives = 450/650 (69%)
Query: 1 MLDFFTIFSKGGIVLWYFQSASQIFTPSLNALIKSVILQERGGNQVFEHNGLVLKHKLDN 60
MLDFFTIFSKGG+VLW FQ S T +NALI+SV+LQERGGN F H L LK+KLDN
Sbjct: 1 MLDFFTIFSKGGLVLWCFQGVSDSCTGPVNALIRSVLLQERGGNNSFTHEALTLKYKLDN 60
Query: 61 EFDLVFVVGFQKILQLSYVDKLLDDVHLEFRDKYKNELG--SDMHLYD--YDFESTYNVL 116
+F+LVFVVGFQKIL L+YVDKL+DDVH FRDKY+ E+ S + L + +DF++ + L
Sbjct: 61 QFELVFVVGFQKILTLTYVDKLIDDVHRLFRDKYRTEIQQQSALSLLNGTFDFQNDFLRL 120
Query: 117 LKEAEEWSKVQACIPKQMRTFEESSKSKKTIASMIIDXXXXXXXXXXXXXXXXAVETKVE 176
L+EAEE SK++A P M+ FE+S K+KK + SMI A + +
Sbjct: 121 LREAEESSKIRA--PTTMKKFEDSEKAKKPVRSMIETRGEKPKEKAKNSKKKGAKKEGSD 178
Query: 177 -PVTPPSPV---QNG-----DAGIE---EDIIMINRQKLAMKMGSPXXXXXXXXXXXXXX 224
P+ PV ++G + G+E E++I R++ K G
Sbjct: 179 GPLATSKPVPAEKSGLPVGPENGVELSKEELIRRKREEFIQKHGRGMEKSNKSTKSDAPK 238
Query: 225 E-GKK-PRIWELSGDQRDLSTLEYTKDKPSDSNALNITPDTHLV-GKMVGG-IKDLXXXX 280
E GKK PR+WEL G L+Y+ + + ++ D +L+ G GG ++DL
Sbjct: 239 EKGKKAPRVWELGGCANK-EVLDYSTPTTNGTPEAALSEDINLIRGTGSGGQLQDLDCSS 297
Query: 281 XXXXXXXXXXXXXRAETSHVSXXXXXXXXXXXMFSLFRGLVGSKNLTKSDMKPILEKMKD 340
A+ S + MF + +GLVGSK+L++ DM+ +L+KM+D
Sbjct: 298 SDDEGA--------AQNS--TKPSATKGTLGGMFGMLKGLVGSKSLSREDMESVLDKMRD 347
Query: 341 HLIAKNVAADIAVKLCDSVALKLEGKVLGTFESVANTVKSTLTDALVQILSPKRRVDILR 400
HLIAKNVAADIAV+LC+SVA KLEGKV+GTF +V +TVK L ++LVQIL P+RRVD+LR
Sbjct: 348 HLIAKNVAADIAVQLCESVANKLEGKVMGTFSTVTSTVKQALQESLVQILQPQRRVDMLR 407
Query: 401 DALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRT 460
D ++A+++ RP+V+ FCGVNGVGKSTNLAKI FWL+EN +VLIAACDTFRAGAVEQLRT
Sbjct: 408 DIMDAQRRQRPYVVTFCGVNGVGKSTNLAKISFWLLENGFSVLIAACDTFRAGAVEQLRT 467
Query: 461 HVRHLCSLHPAAKHGGREMVQLFEKGYGKDPAEIAFRAISHARDMHIDVVLIDTAGRMQD 520
H R L +LHP KHGGR MVQLFEKGYGKD A IA AI+ AR+ DVVL+DTAGRMQD
Sbjct: 468 HTRRLSALHPPEKHGGRTMVQLFEKGYGKDAAGIAMEAIAFARNQGFDVVLVDTAGRMQD 527
Query: 521 NEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVL 580
N PLM ALAKL+ VN PDL+LFVGEALVGNEAVDQLVKFN A+ADHS++ P LIDGIVL
Sbjct: 528 NAPLMTALAKLITVNTPDLVLFVGEALVGNEAVDQLVKFNRALADHSMAQTPRLIDGIVL 587
Query: 581 TKFDTIDDKVGAAISMTYITGQPIVFVGTGQTYTDLKSLNAKAVVNALMK 630
TKFDTIDDKVGAAISMTYIT +PIVFVGTGQTY DL+SLNAKAVV ALMK
Sbjct: 588 TKFDTIDDKVGAAISMTYITSKPIVFVGTGQTYCDLRSLNAKAVVAALMK 637
>UNIPROTKB|F1NXV4 [details] [associations]
symbol:SRPR "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003924 "GTPase activity" evidence=IEA] [GO:0005047
"signal recognition particle binding" evidence=IEA] [GO:0005525
"GTP binding" evidence=IEA] [GO:0005785 "signal recognition
particle receptor complex" evidence=IEA] [GO:0006614 "SRP-dependent
cotranslational protein targeting to membrane" evidence=IEA]
InterPro:IPR000897 InterPro:IPR003593 InterPro:IPR007222
InterPro:IPR011012 InterPro:IPR013822 Pfam:PF00448 Pfam:PF02881
Pfam:PF04086 PROSITE:PS00300 SMART:SM00382 SMART:SM00962
SMART:SM00963 GO:GO:0005525 GO:GO:0003924 SUPFAM:SSF64356
GO:GO:0006614 SUPFAM:SSF47364 GO:GO:0005785 GO:GO:0005047
OMA:LILWSSC GeneTree:ENSGT00550000074936 EMBL:AADN02042027
IPI:IPI00593518 Ensembl:ENSGALT00000001579 Uniprot:F1NXV4
Length = 644
Score = 1671 (593.3 bits), Expect = 6.2e-172, P = 6.2e-172
Identities = 369/654 (56%), Positives = 445/654 (68%)
Query: 1 MLDFFTIFSKGGIVLWYFQSA---SQIFTPSLNALIKSVILQERGGNQVFEHNGLVLKHK 57
MLDFFTIFSKGG+VLW FQ + T +NALI+SV+LQERGGN F H L LK+K
Sbjct: 1 MLDFFTIFSKGGLVLWCFQGVRGPASAATAPVNALIRSVLLQERGGNNSFTHEALTLKYK 60
Query: 58 LDNEFDLVFVVGFQKILQLSYVDKLLDDVHLEFRDKYKNELGSDMHLY----DYDFESTY 113
LDN+F+LVFVVGFQKIL L+YVDKL+DDVH EFRDKY+NE L +DF+ +
Sbjct: 61 LDNQFELVFVVGFQKILTLTYVDKLIDDVHKEFRDKYRNEFQQKGALGILNGTFDFKDDF 120
Query: 114 NVLLKEAEEWSKVQACIPKQMRTFEESSKSKKTIASMIIDXXXXXXXXXXXXXXXXAVET 173
LL+EAEE SKV+A P M+TFE+S KS+KT+ MI + +
Sbjct: 121 LRLLREAEESSKVRA--PTVMKTFEQSVKSQKTVKCMIETRGEKPKEKVKNKKNKGSKKE 178
Query: 174 KVEPVTP-----PSPVQNGDAGIEED-----IIMINRQKLAMK-MGSPXXXXXXXXXXXX 222
E VT P Q+ AG +E+ I+ NR++ + M +
Sbjct: 179 GNEAVTASNKTAPGEKQSSAAGDKEELTKDEILQKNREEFFKRHMKAGEKSSKSPKPDAQ 238
Query: 223 XXEGKKPRIWELSGDQRDLSTLEY---TKDKPSDSNAL-NITPDTHLV--GKMVGGIKDL 276
+GKKPR+W+L + L+Y T + S+++ + + PD L + G + DL
Sbjct: 239 KEKGKKPRVWDLGNS--NAKVLDYSNSTTNGNSEASPMEDFDPDMALRDRNREPGRLYDL 296
Query: 277 XXXXXXXXXXXXXXXXXRAETSHVSXXXXXXXXXXXMFSLFRGLVGSKNLTKSDMKPILE 336
TS S MF + +GLVGSK+LT+ DM P+LE
Sbjct: 297 EYESDEEAEEEKIIQ----NTSKPSTKKGGLGG---MFGMLKGLVGSKSLTRQDMDPVLE 349
Query: 337 KMKDHLIAKNVAADIAVKLCDSVALKLEGKVLGTFESVANTVKSTLTDALVQILSPKRRV 396
KMKDHLIAKNVAA+IAV+LC+SVA KLEGKV+GTF +V +TVK L +ALVQIL P+RRV
Sbjct: 350 KMKDHLIAKNVAAEIAVQLCESVAKKLEGKVMGTFTTVTSTVKQALQEALVQILQPQRRV 409
Query: 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVE 456
D+LRD ++A++ RP+V+ FCGVNGVGKSTNLAKI FWLIEN +VLIAACDTFRAGAVE
Sbjct: 410 DVLRDVMDAQRHRRPYVVTFCGVNGVGKSTNLAKISFWLIENGFSVLIAACDTFRAGAVE 469
Query: 457 QLRTHVRHLCSLHPAAKHGGREMVQLFEKGYGKDPAEIAFRAISHARDMHIDVVLIDTAG 516
QLRTH R L +LHP HGGR MVQL+EKGYGKD A IA AIS+AR+ DVVL+DTAG
Sbjct: 470 QLRTHTRRLNALHPPESHGGRTMVQLYEKGYGKDAAGIAMEAISYARNQGFDVVLVDTAG 529
Query: 517 RMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLID 576
RMQDN PLM ALAKL+ VN PDL+LFVGEALVGNEAVDQLVKFN A+ADHS++ P LID
Sbjct: 530 RMQDNAPLMTALAKLIAVNAPDLVLFVGEALVGNEAVDQLVKFNKALADHSMAQTPRLID 589
Query: 577 GIVLTKFDTIDDKVGAAISMTYITGQPIVFVGTGQTYTDLKSLNAKAVVNALMK 630
GIVLTKFDTIDDKVGAAISMTYIT +PIVFVGTGQTY DL+SLNAKAVV ALMK
Sbjct: 590 GIVLTKFDTIDDKVGAAISMTYITSKPIVFVGTGQTYCDLRSLNAKAVVAALMK 643
>MGI|MGI:1914648 [details] [associations]
symbol:Srpr "signal recognition particle receptor ('docking
protein')" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003924 "GTPase activity" evidence=IEA]
[GO:0005047 "signal recognition particle binding" evidence=IEA]
[GO:0005525 "GTP binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0005783 "endoplasmic
reticulum" evidence=IEA] [GO:0005785 "signal recognition particle
receptor complex" evidence=IEA] [GO:0006184 "GTP catabolic process"
evidence=IEA] [GO:0006614 "SRP-dependent cotranslational protein
targeting to membrane" evidence=IEA] [GO:0006810 "transport"
evidence=IEA] [GO:0006886 "intracellular protein transport"
evidence=IEA] [GO:0016020 "membrane" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR000897 InterPro:IPR003593 InterPro:IPR007222
InterPro:IPR011012 InterPro:IPR013822 Pfam:PF00448 Pfam:PF02881
Pfam:PF04086 PROSITE:PS00300 SMART:SM00382 SMART:SM00962
SMART:SM00963 MGI:MGI:1914648 GO:GO:0005525 GO:GO:0003924
SUPFAM:SSF64356 eggNOG:COG0552 GO:GO:0006614 SUPFAM:SSF47364
KO:K13431 GO:GO:0005785 GO:GO:0005047 CTD:6734 HOGENOM:HOG000201671
HOVERGEN:HBG047566 OrthoDB:EOG4W0XCP GeneTree:ENSGT00550000074936
OMA:KEGSDGP EMBL:AK004967 EMBL:AK038017 EMBL:BC012512 EMBL:BC021839
IPI:IPI00119695 RefSeq:NP_080406.1 UniGene:Mm.284688
ProteinModelPortal:Q9DBG7 SMR:Q9DBG7 STRING:Q9DBG7
PhosphoSite:Q9DBG7 PaxDb:Q9DBG7 PRIDE:Q9DBG7
Ensembl:ENSMUST00000034541 GeneID:67398 KEGG:mmu:67398
UCSC:uc009osy.1 InParanoid:Q9DBG7 NextBio:324466 Bgee:Q9DBG7
Genevestigator:Q9DBG7 GermOnline:ENSMUSG00000032042 Uniprot:Q9DBG7
Length = 636
Score = 1671 (593.3 bits), Expect = 6.2e-172, P = 6.2e-172
Identities = 363/649 (55%), Positives = 443/649 (68%)
Query: 1 MLDFFTIFSKGGIVLWYFQSASQIFTPSLNALIKSVILQERGGNQVFEHNGLVLKHKLDN 60
MLDFFTIFSKGG+VLW FQ S T +NALI+SV+LQERGGN F H L LK+KLDN
Sbjct: 1 MLDFFTIFSKGGLVLWCFQGVSDSCTGPVNALIRSVLLQERGGNNSFTHEALTLKYKLDN 60
Query: 61 EFDLVFVVGFQKILQLSYVDKLLDDVHLEFRDKYKNELG--SDMHLYD--YDFESTYNVL 116
+F+LVFVVGFQKIL L+YVDKL+DDVH FRDKY+ E+ S + L + +DF++ + L
Sbjct: 61 QFELVFVVGFQKILTLTYVDKLIDDVHRLFRDKYRTEIQQQSALSLLNGTFDFQNDFLRL 120
Query: 117 LKEAEEWSKVQACIPKQMRTFEESSKSKKTIASMIIDXXXXXXXXXXXXXXXXAVE---- 172
L+EAEE SK++A P M+ FE+S K+KK + SMI A +
Sbjct: 121 LREAEESSKIRA--PTTMKKFEDSEKAKKPVRSMIETRGEKTKEKAKNNKKRGAKKEGSD 178
Query: 173 -TKVEPVTPPSPVQNGDAGIE------EDIIMINRQKLAMKMGSPXXXXXXXXXXXXXXE 225
T T P+ AG E E++I R++ K G E
Sbjct: 179 GTLATSKTAPAEKSGLSAGPENGELSKEELIRRKREEFIQKHGKGLDKSSKSTKSDTPKE 238
Query: 226 -GKK-PRIWELSGDQRDLSTLEYTKDKPSDSNALNITPDTHLV-GKMVGG-IKDLXXXXX 281
GKK PR+WEL G L+Y+ + + ++ D +L+ G GG ++DL
Sbjct: 239 KGKKAPRVWELGGCANK-EVLDYSTPTTNGTPEAALSEDINLIRGTGPGGQLQDLDCSSS 297
Query: 282 XXXXXXXXXXXXRAETSHVSXXXXXXXXXXXMFSLFRGLVGSKNLTKSDMKPILEKMKDH 341
T + MF + +GLVGSK+L++ DM+ +L+KM+DH
Sbjct: 298 DD----------EGATQNTKPSATKGTLGG-MFGMLKGLVGSKSLSREDMESVLDKMRDH 346
Query: 342 LIAKNVAADIAVKLCDSVALKLEGKVLGTFESVANTVKSTLTDALVQILSPKRRVDILRD 401
LIAKNVAADIAV+LC+SVA KLEGKV+GTF +V +TVK L ++LVQIL P+RRVD+LRD
Sbjct: 347 LIAKNVAADIAVQLCESVANKLEGKVMGTFSTVTSTVKQALQESLVQILQPQRRVDMLRD 406
Query: 402 ALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTH 461
++A+++ RP+V+ FCGVNGVGKSTNLAKI FWL+EN +VLIAACDTFRAGAVEQLRTH
Sbjct: 407 IMDAQRRQRPYVVTFCGVNGVGKSTNLAKISFWLLENGFSVLIAACDTFRAGAVEQLRTH 466
Query: 462 VRHLCSLHPAAKHGGREMVQLFEKGYGKDPAEIAFRAISHARDMHIDVVLIDTAGRMQDN 521
R L +LHP KHGGR MVQLFEKGYGKD A IA AI+ AR+ DVVL+DTAGRMQDN
Sbjct: 467 TRRLTALHPPEKHGGRTMVQLFEKGYGKDAAGIAMEAIAFARNQGFDVVLVDTAGRMQDN 526
Query: 522 EPLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLT 581
PLM ALAKL+ VN PDL+LFVGEALVGNEAVDQLVKFN A+ADHS++ P LIDGIVLT
Sbjct: 527 APLMTALAKLITVNTPDLVLFVGEALVGNEAVDQLVKFNRALADHSMAQTPRLIDGIVLT 586
Query: 582 KFDTIDDKVGAAISMTYITGQPIVFVGTGQTYTDLKSLNAKAVVNALMK 630
KFDTIDDKVGAAISMTYIT +PIVFVGTGQTY DL+SLNAKAVV ALMK
Sbjct: 587 KFDTIDDKVGAAISMTYITSKPIVFVGTGQTYCDLRSLNAKAVVAALMK 635
>RGD|1311504 [details] [associations]
symbol:Srpr "signal recognition particle receptor ('docking
protein')" species:10116 "Rattus norvegicus" [GO:0003924 "GTPase
activity" evidence=IEA] [GO:0005047 "signal recognition particle
binding" evidence=IEA] [GO:0005525 "GTP binding" evidence=IEA]
[GO:0005785 "signal recognition particle receptor complex"
evidence=IEA] [GO:0006614 "SRP-dependent cotranslational protein
targeting to membrane" evidence=IEA] InterPro:IPR000897
InterPro:IPR003593 InterPro:IPR007222 InterPro:IPR011012
InterPro:IPR013822 Pfam:PF00448 Pfam:PF02881 Pfam:PF04086
PROSITE:PS00300 SMART:SM00382 SMART:SM00962 SMART:SM00963
RGD:1311504 GO:GO:0005525 GO:GO:0003924 SUPFAM:SSF64356
eggNOG:COG0552 GO:GO:0006614 SUPFAM:SSF47364 KO:K13431
GO:GO:0005785 GO:GO:0005047 CTD:6734 HOGENOM:HOG000201671
HOVERGEN:HBG047566 OrthoDB:EOG4W0XCP GeneTree:ENSGT00550000074936
OMA:KEGSDGP EMBL:BC105782 IPI:IPI00362579 RefSeq:NP_001029322.1
UniGene:Rn.18349 SMR:Q3KRC3 STRING:Q3KRC3
Ensembl:ENSRNOT00000015177 GeneID:315548 KEGG:rno:315548
UCSC:RGD:1311504 InParanoid:Q3KRC3 NextBio:669402
Genevestigator:Q3KRC3 Uniprot:Q3KRC3
Length = 636
Score = 1670 (592.9 bits), Expect = 8.0e-172, P = 8.0e-172
Identities = 363/650 (55%), Positives = 449/650 (69%)
Query: 1 MLDFFTIFSKGGIVLWYFQSASQIFTPSLNALIKSVILQERGGNQVFEHNGLVLKHKLDN 60
MLDFFTIFSKGG+VLW FQ S T +NALI+SV+LQERGGN F H L LK+KLDN
Sbjct: 1 MLDFFTIFSKGGLVLWCFQGVSDSCTGPVNALIRSVLLQERGGNNSFTHEALTLKYKLDN 60
Query: 61 EFDLVFVVGFQKILQLSYVDKLLDDVHLEFRDKYKNELG--SDMHLYD--YDFESTYNVL 116
+F+LVFVVGFQKIL L+YVDKL+DDVH FRDKY+ E+ S + L + +DF++ + L
Sbjct: 61 QFELVFVVGFQKILTLTYVDKLIDDVHRLFRDKYRTEIQQQSALSLLNGTFDFQNDFLRL 120
Query: 117 LKEAEEWSKVQACIPKQMRTFEESSKSKKTIASMIIDXXXXXXXXXXXXXXXXAVETKVE 176
L+EAEE SK++A P M+ FE+S K+KK + SMI + + +
Sbjct: 121 LREAEESSKIRA--PTTMKKFEDSEKAKKPVRSMIETRGEKTKEKAKNNKKKGSKKEGSD 178
Query: 177 -PV----TPPS-----PV--QNGDAGIEEDIIMINRQKLAMKMGSPXXXXXXXXXXXXXX 224
P+ T P+ PV +NG+ +E++I R++ K G
Sbjct: 179 GPLATSKTAPAEKSGLPVGPENGELS-KEELIRRKREEFIQKHGKGLDKSSKSTKSDIPK 237
Query: 225 E-GKK-PRIWELSGDQRDLSTLEYTKDKPSDSNALNITPDTHLV-GKMVGG-IKDLXXXX 280
E GKK PR+WEL G L+Y+ + + ++ D +L+ G GG ++DL
Sbjct: 238 EKGKKAPRVWELGGCANK-EVLDYSTPTTNGTPEAALSEDINLIRGTGPGGQLQDLDCSS 296
Query: 281 XXXXXXXXXXXXXRAETSHVSXXXXXXXXXXXMFSLFRGLVGSKNLTKSDMKPILEKMKD 340
T + MF + +GLVGSK+L++ DM+ +L+KM+D
Sbjct: 297 SDD----------EGATQNTKPSATKGTLGG-MFGMLKGLVGSKSLSREDMESVLDKMRD 345
Query: 341 HLIAKNVAADIAVKLCDSVALKLEGKVLGTFESVANTVKSTLTDALVQILSPKRRVDILR 400
HLIAKNVAADIAV+LC+SVA KLEGKV+GTF +V +TVK L ++LVQIL P+RRVD+LR
Sbjct: 346 HLIAKNVAADIAVQLCESVANKLEGKVMGTFSTVTSTVKQALQESLVQILQPQRRVDMLR 405
Query: 401 DALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRT 460
D ++A+++ RP+V+ FCGVNGVGKSTNLAKI FWL+EN +VLIAACDTFRAGAVEQLRT
Sbjct: 406 DIMDAQRRQRPYVVTFCGVNGVGKSTNLAKISFWLLENGFSVLIAACDTFRAGAVEQLRT 465
Query: 461 HVRHLCSLHPAAKHGGREMVQLFEKGYGKDPAEIAFRAISHARDMHIDVVLIDTAGRMQD 520
H R L +LHP KHGGR MVQLFEKGYGKD A IA AI+ AR+ DVVL+DTAGRMQD
Sbjct: 466 HTRRLTALHPPEKHGGRTMVQLFEKGYGKDAAGIAMEAIAFARNQGFDVVLVDTAGRMQD 525
Query: 521 NEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVL 580
N PLM ALAKL+ VN PDL+LFVGEALVGNEAVDQLVKFN A+ADHS++ P LIDGIVL
Sbjct: 526 NAPLMTALAKLITVNTPDLVLFVGEALVGNEAVDQLVKFNRALADHSMAQTPRLIDGIVL 585
Query: 581 TKFDTIDDKVGAAISMTYITGQPIVFVGTGQTYTDLKSLNAKAVVNALMK 630
TKFDTIDDKVGAAISMTYIT +PIVFVGTGQTY DL+SLNAKAVV ALMK
Sbjct: 586 TKFDTIDDKVGAAISMTYITSKPIVFVGTGQTYCDLRSLNAKAVVAALMK 635
>UNIPROTKB|F1S754 [details] [associations]
symbol:SRPR "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006614 "SRP-dependent cotranslational protein
targeting to membrane" evidence=IEA] [GO:0005785 "signal
recognition particle receptor complex" evidence=IEA] [GO:0005525
"GTP binding" evidence=IEA] [GO:0005047 "signal recognition
particle binding" evidence=IEA] [GO:0003924 "GTPase activity"
evidence=IEA] InterPro:IPR000897 InterPro:IPR003593
InterPro:IPR007222 InterPro:IPR011012 InterPro:IPR013822
Pfam:PF00448 Pfam:PF02881 Pfam:PF04086 PROSITE:PS00300
SMART:SM00382 SMART:SM00962 SMART:SM00963 GO:GO:0005525
GO:GO:0003924 SUPFAM:SSF64356 GO:GO:0006614 SUPFAM:SSF47364
GO:GO:0005785 GO:GO:0005047 GeneTree:ENSGT00550000074936
OMA:KEGSDGP EMBL:CU466237 EMBL:FP102836 EMBL:GACC01000039
Ensembl:ENSSSCT00000016593 Uniprot:F1S754
Length = 638
Score = 1669 (592.6 bits), Expect = 1.0e-171, P = 1.0e-171
Identities = 367/653 (56%), Positives = 446/653 (68%)
Query: 1 MLDFFTIFSKGGIVLWYFQSASQIFTPSLNALIKSVILQERGGNQVFEHNGLVLKHKLDN 60
MLDFFTIFSKGG+VLW FQ S T +NALI+SV+LQERGGN F H L LK+KLDN
Sbjct: 1 MLDFFTIFSKGGLVLWCFQGVSDSCTGPVNALIRSVLLQERGGNNSFTHEALTLKYKLDN 60
Query: 61 EFDLVFVVGFQKILQLSYVDKLLDDVHLEFRDKYKNELG--SDMHLYD--YDFESTYNVL 116
+F+LVFVVGFQKIL L+YVDKL+DDVH FRDKY+ E+ S + L + +DF++ + L
Sbjct: 61 QFELVFVVGFQKILTLTYVDKLIDDVHRLFRDKYRTEIQQQSALSLLNGTFDFQNDFLRL 120
Query: 117 LKEAEEWSKVQACIPKQMRTFEESSKSKKTIASMIIDXXXXXXXXXXXXXXXXAVE---- 172
L+EAEE SK++A P M+ FE+S KSKK + SMI A +
Sbjct: 121 LREAEESSKIRA--PTTMKKFEDSEKSKKPVRSMIETRGEKPKEKAKNSKKKGAKKEGSD 178
Query: 173 -----TKVEPVTPPSPVQNG-DAGIE---EDIIMINRQKLAMKMGSPXXXXXXXXXXXXX 223
+K P T S V G + G+E E++I R++ K G
Sbjct: 179 GPLATSKAVP-TEKSGVPVGPENGVELSKEELIRRKREEFIQKHGRGVEKSGKSTKSDAP 237
Query: 224 XE-GKK-PRIWELSGDQRDLSTLEYTKDKPSDSNALNITP--DTHLV-GKMVGG-IKDLX 277
E GKK PR+W L G L+Y+ P+ + A P D +L+ G GG ++DL
Sbjct: 238 KEKGKKAPRVWALGGSANK-EVLDYST--PTTNGAPEAAPPEDINLIRGTGPGGQLQDLD 294
Query: 278 XXXXXXXXXXXXXXXXRAETSHVSXXXXXXXXXXXMFSLFRGLVGSKNLTKSDMKPILEK 337
T + + MF + +GLVGSK+L++ DM+ +L+K
Sbjct: 295 CSSSDD----------EGATQNSTKPSSTKGTLGGMFGMLKGLVGSKSLSREDMESVLDK 344
Query: 338 MKDHLIAKNVAADIAVKLCDSVALKLEGKVLGTFESVANTVKSTLTDALVQILSPKRRVD 397
M+DHLIAKNVAADIAV+LC+SVA KLEGKV+GTF +V +TVK L ++LVQIL P+RRVD
Sbjct: 345 MRDHLIAKNVAADIAVQLCESVASKLEGKVMGTFSTVTSTVKQALQESLVQILQPQRRVD 404
Query: 398 ILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQ 457
+LRD ++A++ RP+V+ FCGVNGVGKSTNLAKI FWL+EN +VLIAACDTFRAGAVEQ
Sbjct: 405 MLRDIMDAQRHQRPYVVTFCGVNGVGKSTNLAKISFWLLENGFSVLIAACDTFRAGAVEQ 464
Query: 458 LRTHVRHLCSLHPAAKHGGREMVQLFEKGYGKDPAEIAFRAISHARDMHIDVVLIDTAGR 517
LRTH R L +LHP HGGR MVQLFEKGYGKD A IA AI+ AR+ DVVL+DTAGR
Sbjct: 465 LRTHTRRLSALHPPENHGGRTMVQLFEKGYGKDAAGIAMEAIAFARNQGFDVVLVDTAGR 524
Query: 518 MQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDG 577
MQDN PLM ALAKL+ VN PDL+LFVGEALVGNEAVDQLVKFN A+ADHS++ P LIDG
Sbjct: 525 MQDNAPLMTALAKLITVNTPDLVLFVGEALVGNEAVDQLVKFNRALADHSMAQTPRLIDG 584
Query: 578 IVLTKFDTIDDKVGAAISMTYITGQPIVFVGTGQTYTDLKSLNAKAVVNALMK 630
IVLTKFDTIDDKVGAAISMTYIT +PIVFVGTGQTY DL+SLNAKAVV ALMK
Sbjct: 585 IVLTKFDTIDDKVGAAISMTYITSKPIVFVGTGQTYCDLRSLNAKAVVAALMK 637
>UNIPROTKB|Q3MHE8 [details] [associations]
symbol:SRPR "Signal recognition particle receptor subunit
alpha" species:9913 "Bos taurus" [GO:0005525 "GTP binding"
evidence=IEA] [GO:0006614 "SRP-dependent cotranslational protein
targeting to membrane" evidence=IEA] [GO:0005785 "signal
recognition particle receptor complex" evidence=IEA] [GO:0005047
"signal recognition particle binding" evidence=IEA] [GO:0003924
"GTPase activity" evidence=IEA] InterPro:IPR000897
InterPro:IPR003593 InterPro:IPR007222 InterPro:IPR011012
InterPro:IPR013822 Pfam:PF00448 Pfam:PF02881 Pfam:PF04086
PROSITE:PS00300 SMART:SM00382 SMART:SM00962 SMART:SM00963
GO:GO:0005525 GO:GO:0003924 SUPFAM:SSF64356 eggNOG:COG0552
GO:GO:0006614 SUPFAM:SSF47364 KO:K13431 GO:GO:0005785 GO:GO:0005047
EMBL:BC105264 IPI:IPI00695733 RefSeq:NP_001068590.1 UniGene:Bt.5518
HSSP:P08240 ProteinModelPortal:Q3MHE8 SMR:Q3MHE8 STRING:Q3MHE8
PRIDE:Q3MHE8 GeneID:281504 KEGG:bta:281504 CTD:6734
HOGENOM:HOG000201671 HOVERGEN:HBG047566 InParanoid:Q3MHE8
OrthoDB:EOG4W0XCP NextBio:20805473 Uniprot:Q3MHE8
Length = 639
Score = 1660 (589.4 bits), Expect = 9.1e-171, P = 9.1e-171
Identities = 363/651 (55%), Positives = 442/651 (67%)
Query: 1 MLDFFTIFSKGGIVLWYFQSASQIFTPSLNALIKSVILQERGGNQVFEHNGLVLKHKLDN 60
MLDFFTIFSKGG+VLW FQ S T +NALI+SV+LQERGGN F H L LK+KLDN
Sbjct: 1 MLDFFTIFSKGGLVLWCFQGVSDSCTGPVNALIRSVLLQERGGNNSFTHEALTLKYKLDN 60
Query: 61 EFDLVFVVGFQKILQLSYVDKLLDDVHLEFRDKYKNELG--SDMHLYD--YDFESTYNVL 116
+F+LVFVVGFQKIL L+YVDKL+DDVH FRDKY+ E+ S + L + +DF++ + L
Sbjct: 61 QFELVFVVGFQKILTLTYVDKLIDDVHRLFRDKYRTEIQQQSALSLLNGTFDFQNDFLRL 120
Query: 117 LKEAEEWSKVQACIPKQMRTFEESSKSKKTIASMIIDXXXXXXXXXXXXXXXXAVE---- 172
L+EAEE SK++A P M+ FE+S K+KK + SMI +
Sbjct: 121 LREAEESSKIRA--PTTMKKFEDSEKAKKPVRSMIETRGEKPKEKAKNNKKNKGAKKEGS 178
Query: 173 ------TKVEPVTPPS-PV--QNGDAGIEEDIIMINRQKLAMKMGSPXXXXXXXXXXXXX 223
+K P PV +NG+ +E+ I R++ K G
Sbjct: 179 DGPLATSKAAPAEKSGLPVGPENGEELSKEEQIRRKREEFIQKHGRGMEKSSKSSKSDAP 238
Query: 224 XE-GKK-PRIWELSGDQRDLSTLEYTKDKPSDSNALNITP--DTHLVGKMVGGIKDLXXX 279
E GKK PR+W L G L+Y+ P+ + A P D +L+ + G + L
Sbjct: 239 KEKGKKAPRVWALGGSANK-EVLDYST--PTTNGAPEAAPPEDINLI-RGTGPGRQLQDL 294
Query: 280 XXXXXXXXXXXXXXRAETSHVSXXXXXXXXXXXMFSLFRGLVGSKNLTKSDMKPILEKMK 339
A+ S + MF + +GLVGSK+LT+ DM+ +L+KM+
Sbjct: 295 DCSSSDDEGA-----AQNS--TKPSATKGTLGGMFGMLKGLVGSKSLTREDMESVLDKMR 347
Query: 340 DHLIAKNVAADIAVKLCDSVALKLEGKVLGTFESVANTVKSTLTDALVQILSPKRRVDIL 399
DHLIAKNVAADIAV+LC+SVA KLEGKV+GTF +V +TVK L ++LVQIL P+RRVD+L
Sbjct: 348 DHLIAKNVAADIAVQLCESVANKLEGKVMGTFSTVTSTVKQALQESLVQILQPQRRVDML 407
Query: 400 RDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLR 459
RD ++A++ RP+V+ FCGVNGVGKSTNLAKI FWL+EN +VLIAACDTFRAGAVEQLR
Sbjct: 408 RDIMDAQRHQRPYVVTFCGVNGVGKSTNLAKISFWLLENGFSVLIAACDTFRAGAVEQLR 467
Query: 460 THVRHLCSLHPAAKHGGREMVQLFEKGYGKDPAEIAFRAISHARDMHIDVVLIDTAGRMQ 519
TH R L +LHP KHGGR MVQLFEKGYGKD A IA AI+ AR+ DVVL+DTAGRMQ
Sbjct: 468 THTRRLSALHPPEKHGGRTMVQLFEKGYGKDAAGIAMEAIAFARNQGFDVVLVDTAGRMQ 527
Query: 520 DNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIV 579
DN PLM ALAKL+ VN PDL+LFVGEALVGNEAVDQLVKFN A+ADHS++ P LIDGIV
Sbjct: 528 DNAPLMTALAKLITVNTPDLVLFVGEALVGNEAVDQLVKFNRALADHSMAQTPRLIDGIV 587
Query: 580 LTKFDTIDDKVGAAISMTYITGQPIVFVGTGQTYTDLKSLNAKAVVNALMK 630
LTKFDTIDDKVGAAISMTYIT +PIVFVGTGQTY DL+SLNAKAVV ALMK
Sbjct: 588 LTKFDTIDDKVGAAISMTYITSKPIVFVGTGQTYCDLRSLNAKAVVAALMK 638
>UNIPROTKB|P06625 [details] [associations]
symbol:SRPR "Signal recognition particle receptor subunit
alpha" species:9615 "Canis lupus familiaris" [GO:0005789
"endoplasmic reticulum membrane" evidence=TAS] [GO:0005525 "GTP
binding" evidence=IEA] [GO:0006614 "SRP-dependent cotranslational
protein targeting to membrane" evidence=IEA] [GO:0005785 "signal
recognition particle receptor complex" evidence=IEA] [GO:0005047
"signal recognition particle binding" evidence=IEA] [GO:0003924
"GTPase activity" evidence=IEA] Reactome:REACT_86357
InterPro:IPR000897 InterPro:IPR003593 InterPro:IPR007222
InterPro:IPR011012 InterPro:IPR013822 Pfam:PF00448 Pfam:PF02881
Pfam:PF04086 PROSITE:PS00300 SMART:SM00382 SMART:SM00962
SMART:SM00963 GO:GO:0005525 GO:GO:0005789 GO:GO:0003924
SUPFAM:SSF64356 eggNOG:COG0552 GO:GO:0006614 SUPFAM:SSF47364
GO:GO:0005785 Reactome:REACT_146484 GO:GO:0005047
HOGENOM:HOG000201671 HOVERGEN:HBG047566 OrthoDB:EOG4W0XCP
EMBL:X03184 PIR:A24570 ProteinModelPortal:P06625 SMR:P06625
STRING:P06625 PRIDE:P06625 InParanoid:P06625 Uniprot:P06625
Length = 638
Score = 1642 (583.1 bits), Expect = 7.4e-169, P = 7.4e-169
Identities = 362/653 (55%), Positives = 445/653 (68%)
Query: 1 MLDFFTIFSKGGIVLWYFQSASQIFTPSLNALIKSVILQERGGNQVFEHNGLVLKHKLDN 60
MLDFFTIFSKGG+VLW FQ S T +NALI+SV+LQERGGN F H L LK+KLDN
Sbjct: 1 MLDFFTIFSKGGLVLWCFQGVSDSCTGPVNALIRSVLLQERGGNNSFTHEALTLKYKLDN 60
Query: 61 EFDLVFVVGFQKILQLSYVDKLLDDVHLEFRDKYKNELG--SDMHLYD--YDFESTYNVL 116
+F+LVFVVGFQKIL L+YVDKL+DDVH FRDKY+ E+ S + L + +DF++ + L
Sbjct: 61 QFELVFVVGFQKILTLTYVDKLIDDVHRLFRDKYRTEIQQQSALSLLNGTFDFQNDFLRL 120
Query: 117 LKEAEEWSKVQACIPKQMRTFEESSKSKKTIASMIIDXXXXXXXXXXXXXXXXAV-ETKV 175
L+E EE SK++A P M+ FE+S K+KK + SMI A E+
Sbjct: 121 LREREESSKIRA--PTTMKKFEDSEKAKKPVRSMIETRGEKPKEKAKNSKKKGAKKESSD 178
Query: 176 EPVT-----P------PSPVQNGDAGIEEDIIMINRQKLAMKMGSPXXXXXXXXXXXXXX 224
P+ P P+ +NG +E++I R++ K G
Sbjct: 179 GPLATGKAVPAEKSGLPAGPENGVELSKEELIRRKREEFIQKHGRGLEKSSKSTKSDAPK 238
Query: 225 E-GKK-PRIWELSGDQRDLSTLEYTKDKPSDSNALNITP--DTHLV-GKMVGG-IKDLXX 278
E GKK PR+W L G L+Y+ P+ + A + P D +L+ G GG ++DL
Sbjct: 239 EKGKKAPRVWALGGCANK-EVLDYSA--PTTNGAPDAAPPEDINLIRGTGPGGQLQDLDC 295
Query: 279 XXXXXXXXXXXXXXXRAETS-HVSXXXXXXXXXXXMFSLFRGLVGSKNLTKSDMKPILEK 337
ET+ + S MF + +GLVGSK+L++ DM+ +L+K
Sbjct: 296 SSSDDE-----------ETAQNASKPSATKGTLGGMFGMLKGLVGSKSLSREDMESVLDK 344
Query: 338 MKDHLIAKNVAADIAVKLCDSVALKLEGKVLGTFESVANTVKSTLTDALVQILSPKRRVD 397
M+DHLIAKNVAADIAV+LC+SVA KLEGKV+GTF +V +TVK L ++LVQIL P+RRVD
Sbjct: 345 MRDHLIAKNVAADIAVQLCESVANKLEGKVMGTFSTVTSTVKQALQESLVQILQPQRRVD 404
Query: 398 ILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQ 457
+LRD ++A++ RP+V+ FCGVNGVGKSTNLAKI FWL+EN +VLIAACDTFRAGAVE
Sbjct: 405 MLRDIMDAQRHQRPYVVTFCGVNGVGKSTNLAKISFWLLENGFSVLIAACDTFRAGAVEH 464
Query: 458 LRTHVRHLCSLHPAAKHGGREMVQLFEKGYGKDPAEIAFRAISHARDMHIDVVLIDTAGR 517
+RTH R L +LHP KH G MVQLFEKGYGKD A IA AI+ AR+ DVVL+DTAGR
Sbjct: 465 VRTHTRRLSALHPPEKHAGPTMVQLFEKGYGKDAAGIAMEAIAFARNQGFDVVLVDTAGR 524
Query: 518 MQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDG 577
MQDN PLM ALAKL+ VN PDL+LFVGEALVGNEAVDQLVKFN A+ADHS++ P LIDG
Sbjct: 525 MQDNAPLMTALAKLITVNTPDLVLFVGEALVGNEAVDQLVKFNRALADHSMAQTPRLIDG 584
Query: 578 IVLTKFDTIDDKVGAAISMTYITGQPIVFVGTGQTYTDLKSLNAKAVVNALMK 630
IVLTKFDTIDDKVGAAISMTYIT +PIVFVGTGQTY DL+SLNAKAVV ALMK
Sbjct: 585 IVLTKFDTIDDKVGAAISMTYITSKPIVFVGTGQTYCDLRSLNAKAVVAALMK 637
>UNIPROTKB|F1PLH3 [details] [associations]
symbol:SRPR "Signal recognition particle receptor subunit
alpha" species:9615 "Canis lupus familiaris" [GO:0006614
"SRP-dependent cotranslational protein targeting to membrane"
evidence=IEA] [GO:0005785 "signal recognition particle receptor
complex" evidence=IEA] [GO:0005525 "GTP binding" evidence=IEA]
[GO:0005047 "signal recognition particle binding" evidence=IEA]
[GO:0003924 "GTPase activity" evidence=IEA] InterPro:IPR000897
InterPro:IPR003593 InterPro:IPR007222 InterPro:IPR011012
InterPro:IPR013822 Pfam:PF00448 Pfam:PF02881 Pfam:PF04086
PROSITE:PS00300 SMART:SM00382 SMART:SM00962 SMART:SM00963
GO:GO:0005525 GO:GO:0003924 SUPFAM:SSF64356 GO:GO:0006614
SUPFAM:SSF47364 KO:K13431 GO:GO:0005785 GO:GO:0005047 CTD:6734
GeneTree:ENSGT00550000074936 EMBL:AAEX03003376 EMBL:AAEX03003378
EMBL:AAEX03003377 EMBL:AAEX03003379 RefSeq:XP_546411.3
Ensembl:ENSCAFT00000016629 GeneID:489293 KEGG:cfa:489293
Uniprot:F1PLH3
Length = 638
Score = 1617 (574.3 bits), Expect = 3.3e-166, P = 3.3e-166
Identities = 360/653 (55%), Positives = 441/653 (67%)
Query: 1 MLDFFTIFSKGGIVLWYFQSASQIFTPSLNALIKSVILQERGGNQVFEHNGLVLKHKLDN 60
MLDFFTIFSKGG+VLW + AS F L+ S QERGGN F H L LK+KLDN
Sbjct: 1 MLDFFTIFSKGGLVLWASRGASLGFLGGLDVSETSSSFQERGGNNSFTHEALTLKYKLDN 60
Query: 61 EFDLVFVVGFQKILQLSYVDKLLDDVHLEFRDKYKNELG--SDMHLYD--YDFESTYNVL 116
+F+LVFVVGFQKIL L+YVDKL+DDVH FRDKY+ E+ S + L + +DF++ + L
Sbjct: 61 QFELVFVVGFQKILTLTYVDKLIDDVHRLFRDKYRTEIQQQSALSLLNGTFDFQNDFLRL 120
Query: 117 LKEAEEWSKVQACIPKQMRTFEESSKSKKTIASMIIDXXXXXXXXXXXXXXXXAV-ETKV 175
L+EAEE SK++A P M+ FE+S K+KK + SMI A E+
Sbjct: 121 LREAEESSKIRA--PTTMKKFEDSEKAKKPVRSMIETRGEKPKEKAKNSKKKGAKKESSD 178
Query: 176 EPVT-----P------PSPVQNGDAGIEEDIIMINRQKLAMKMGSPXXXXXXXXXXXXXX 224
P+ P P+ +NG +E++I R++ K G
Sbjct: 179 GPLATGKAVPAEKSGLPAGPENGVELSKEELIRRKREEFIQKHGRGLEKSSKSTKSDAPK 238
Query: 225 E-GKK-PRIWELSGDQRDLSTLEYTKDKPSDSNALNITP--DTHLV-GKMVGG-IKDLXX 278
E GKK PR+W L G L+Y+ P+ + A + P D +L+ G GG ++DL
Sbjct: 239 EKGKKAPRVWALGGCANK-EVLDYSA--PTTNGAPDAAPPEDINLIRGTGPGGQLQDLDC 295
Query: 279 XXXXXXXXXXXXXXXRAETS-HVSXXXXXXXXXXXMFSLFRGLVGSKNLTKSDMKPILEK 337
ET+ + S MF + +GLVGSK+L++ DM+ +L+K
Sbjct: 296 SSSDDE-----------ETAQNASKPSATKGTLGGMFGMLKGLVGSKSLSREDMESVLDK 344
Query: 338 MKDHLIAKNVAADIAVKLCDSVALKLEGKVLGTFESVANTVKSTLTDALVQILSPKRRVD 397
M+DHLIAKNVAADIAV+LC+SVA KLEGKV+GTF +V +TVK L ++LVQIL P+RRVD
Sbjct: 345 MRDHLIAKNVAADIAVQLCESVANKLEGKVMGTFSTVTSTVKQALQESLVQILQPQRRVD 404
Query: 398 ILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQ 457
+LRD ++A++ RP+V+ FCGVNGVGKSTNLAKI FWL+EN +VLIAACDTFRAGAVEQ
Sbjct: 405 MLRDIMDAQRHQRPYVVTFCGVNGVGKSTNLAKISFWLLENGFSVLIAACDTFRAGAVEQ 464
Query: 458 LRTHVRHLCSLHPAAKHGGREMVQLFEKGYGKDPAEIAFRAISHARDMHIDVVLIDTAGR 517
LRTH R L +LHP KH GR MVQLFEKGYGKD A IA AI+ AR+ DVVL+DTAGR
Sbjct: 465 LRTHTRRLSALHPPEKHAGRTMVQLFEKGYGKDAAGIAMEAIAFARNQGFDVVLVDTAGR 524
Query: 518 MQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDG 577
MQDN PLM ALAKL+ VN PDL+LFVGEALVGNEAVDQLVKFN A+ADHS++ P LIDG
Sbjct: 525 MQDNAPLMTALAKLITVNTPDLVLFVGEALVGNEAVDQLVKFNRALADHSMAQTPRLIDG 584
Query: 578 IVLTKFDTIDDKVGAAISMTYITGQPIVFVGTGQTYTDLKSLNAKAVVNALMK 630
IVLTKFDTIDDKVGAAISMTYIT +PIVFVGTGQTY DL+SLNAKAVV ALMK
Sbjct: 585 IVLTKFDTIDDKVGAAISMTYITSKPIVFVGTGQTYCDLRSLNAKAVVAALMK 637
>UNIPROTKB|J9NTJ9 [details] [associations]
symbol:SRPR "Signal recognition particle receptor subunit
alpha" species:9615 "Canis lupus familiaris" [GO:0006614
"SRP-dependent cotranslational protein targeting to membrane"
evidence=IEA] [GO:0005785 "signal recognition particle receptor
complex" evidence=IEA] [GO:0005525 "GTP binding" evidence=IEA]
[GO:0005047 "signal recognition particle binding" evidence=IEA]
[GO:0003924 "GTPase activity" evidence=IEA] InterPro:IPR000897
InterPro:IPR003593 InterPro:IPR007222 InterPro:IPR011012
InterPro:IPR013822 Pfam:PF00448 Pfam:PF02881 Pfam:PF04086
PROSITE:PS00300 SMART:SM00382 SMART:SM00962 SMART:SM00963
GO:GO:0005525 GO:GO:0003924 SUPFAM:SSF64356 GO:GO:0006614
SUPFAM:SSF47364 GO:GO:0005785 GO:GO:0005047
GeneTree:ENSGT00550000074936 EMBL:AAEX03003376 EMBL:AAEX03003378
EMBL:AAEX03003377 EMBL:AAEX03003379 Ensembl:ENSCAFT00000045313
Uniprot:J9NTJ9
Length = 637
Score = 1613 (572.9 bits), Expect = 8.7e-166, P = 8.7e-166
Identities = 360/653 (55%), Positives = 440/653 (67%)
Query: 1 MLDFFTIFSKGGIVLWYFQSASQIFTPSLNALIKSVILQERGGNQVFEHNGLVLKHKLDN 60
MLDFFTIFSKGG+VLW FQ S L+ S QERGGN F H L LK+KLDN
Sbjct: 1 MLDFFTIFSKGGLVLW-FQGVSACCFGGLDVSETSSSFQERGGNNSFTHEALTLKYKLDN 59
Query: 61 EFDLVFVVGFQKILQLSYVDKLLDDVHLEFRDKYKNELG--SDMHLYD--YDFESTYNVL 116
+F+LVFVVGFQKIL L+YVDKL+DDVH FRDKY+ E+ S + L + +DF++ + L
Sbjct: 60 QFELVFVVGFQKILTLTYVDKLIDDVHRLFRDKYRTEIQQQSALSLLNGTFDFQNDFLRL 119
Query: 117 LKEAEEWSKVQACIPKQMRTFEESSKSKKTIASMIIDXXXXXXXXXXXXXXXXAV-ETKV 175
L+EAEE SK++A P M+ FE+S K+KK + SMI A E+
Sbjct: 120 LREAEESSKIRA--PTTMKKFEDSEKAKKPVRSMIETRGEKPKEKAKNSKKKGAKKESSD 177
Query: 176 EPVT-----P------PSPVQNGDAGIEEDIIMINRQKLAMKMGSPXXXXXXXXXXXXXX 224
P+ P P+ +NG +E++I R++ K G
Sbjct: 178 GPLATGKAVPAEKSGLPAGPENGVELSKEELIRRKREEFIQKHGRGLEKSSKSTKSDAPK 237
Query: 225 E-GKK-PRIWELSGDQRDLSTLEYTKDKPSDSNALNITP--DTHLV-GKMVGG-IKDLXX 278
E GKK PR+W L G L+Y+ P+ + A + P D +L+ G GG ++DL
Sbjct: 238 EKGKKAPRVWALGGCANK-EVLDYSA--PTTNGAPDAAPPEDINLIRGTGPGGQLQDLDC 294
Query: 279 XXXXXXXXXXXXXXXRAETS-HVSXXXXXXXXXXXMFSLFRGLVGSKNLTKSDMKPILEK 337
ET+ + S MF + +GLVGSK+L++ DM+ +L+K
Sbjct: 295 SSSDDE-----------ETAQNASKPSATKGTLGGMFGMLKGLVGSKSLSREDMESVLDK 343
Query: 338 MKDHLIAKNVAADIAVKLCDSVALKLEGKVLGTFESVANTVKSTLTDALVQILSPKRRVD 397
M+DHLIAKNVAADIAV+LC+SVA KLEGKV+GTF +V +TVK L ++LVQIL P+RRVD
Sbjct: 344 MRDHLIAKNVAADIAVQLCESVANKLEGKVMGTFSTVTSTVKQALQESLVQILQPQRRVD 403
Query: 398 ILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQ 457
+LRD ++A++ RP+V+ FCGVNGVGKSTNLAKI FWL+EN +VLIAACDTFRAGAVEQ
Sbjct: 404 MLRDIMDAQRHQRPYVVTFCGVNGVGKSTNLAKISFWLLENGFSVLIAACDTFRAGAVEQ 463
Query: 458 LRTHVRHLCSLHPAAKHGGREMVQLFEKGYGKDPAEIAFRAISHARDMHIDVVLIDTAGR 517
LRTH R L +LHP KH GR MVQLFEKGYGKD A IA AI+ AR+ DVVL+DTAGR
Sbjct: 464 LRTHTRRLSALHPPEKHAGRTMVQLFEKGYGKDAAGIAMEAIAFARNQGFDVVLVDTAGR 523
Query: 518 MQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDG 577
MQDN PLM ALAKL+ VN PDL+LFVGEALVGNEAVDQLVKFN A+ADHS++ P LIDG
Sbjct: 524 MQDNAPLMTALAKLITVNTPDLVLFVGEALVGNEAVDQLVKFNRALADHSMAQTPRLIDG 583
Query: 578 IVLTKFDTIDDKVGAAISMTYITGQPIVFVGTGQTYTDLKSLNAKAVVNALMK 630
IVLTKFDTIDDKVGAAISMTYIT +PIVFVGTGQTY DL+SLNAKAVV ALMK
Sbjct: 584 IVLTKFDTIDDKVGAAISMTYITSKPIVFVGTGQTYCDLRSLNAKAVVAALMK 636
>FB|FBgn0010391 [details] [associations]
symbol:Gtp-bp "GTP-binding protein" species:7227 "Drosophila
melanogaster" [GO:0003729 "mRNA binding" evidence=NAS] [GO:0005789
"endoplasmic reticulum membrane" evidence=IDA] [GO:0007409
"axonogenesis" evidence=IEP] [GO:0050708 "regulation of protein
secretion" evidence=IEP] [GO:0005785 "signal recognition particle
receptor complex" evidence=ISS] [GO:0005047 "signal recognition
particle binding" evidence=ISS] [GO:0005525 "GTP binding"
evidence=IEA;NAS] [GO:0006184 "GTP catabolic process" evidence=IEA]
[GO:0006614 "SRP-dependent cotranslational protein targeting to
membrane" evidence=IEA] [GO:0003924 "GTPase activity" evidence=IEA]
[GO:0005811 "lipid particle" evidence=IDA] InterPro:IPR000897
InterPro:IPR003593 InterPro:IPR007222 InterPro:IPR011012
InterPro:IPR013822 Pfam:PF00448 Pfam:PF02881 Pfam:PF04086
PROSITE:PS00300 SMART:SM00382 SMART:SM00962 SMART:SM00963
GO:GO:0005525 GO:GO:0005789 GO:GO:0005811 EMBL:AE014298
GO:GO:0003924 GO:GO:0003723 GO:GO:0007409 GO:GO:0050708
SUPFAM:SSF64356 eggNOG:COG0552 GO:GO:0006614 SUPFAM:SSF47364
KO:K13431 GO:GO:0005785 GO:GO:0005047 OMA:LILWSSC EMBL:AY061329
EMBL:S65640 RefSeq:NP_524887.2 UniGene:Dm.129
ProteinModelPortal:Q9U5L1 SMR:Q9U5L1 IntAct:Q9U5L1 MINT:MINT-765133
STRING:Q9U5L1 PaxDb:Q9U5L1 EnsemblMetazoa:FBtr0073480 GeneID:47251
KEGG:dme:Dmel_CG2522 CTD:47251 FlyBase:FBgn0010391
GeneTree:ENSGT00550000074936 InParanoid:Q9U5L1 OrthoDB:EOG4W0VV7
PhylomeDB:Q9U5L1 GenomeRNAi:47251 NextBio:838983 Bgee:Q9U5L1
GermOnline:CG2522 Uniprot:Q9U5L1
Length = 614
Score = 1580 (561.2 bits), Expect = 2.7e-162, P = 2.7e-162
Identities = 337/633 (53%), Positives = 425/633 (67%)
Query: 1 MLDFFTIFSKGGIVLWYFQSASQIFTPSLNALIKSVILQERGGNQVFEHNGLVLKHKLDN 60
MLDF IF+KGG+VLW+ ++ F +N+LI+ VIL+ER + L +
Sbjct: 1 MLDFVVIFTKGGVVLWHSNASGNSFASCINSLIRGVILEERNTEAKYYEEDH-LAVQFKL 59
Query: 61 EFDLVFVVGFQKILQLSYVDKLLDDVHLEFRDKYKNELGSDMHLYD-YDFESTYNVLLKE 119
+ +L V + I Q LD + + +K + G D+ L D YDF+ Y +L
Sbjct: 60 DNELDLV--YAAIFQKVIKLNYLDGFLADMQAAFKEKYG-DIRLGDDYDFDREYRRVLSA 116
Query: 120 AEEWSKVQACIPKQMRTFEESSKSKKTIASMIIDXXXXXXXXXXXXXXXXAVETKVEPVT 179
AEE S Q PK MR++ ES KSKKT+ASMI D +K +P +
Sbjct: 117 AEEASAKQVKAPKTMRSYNESQKSKKTVASMIQDDKKPVEKRVNIQEA--PPPSKSQPSS 174
Query: 180 PPSPVQNGDAGIEEDIIMINRQKLAMKMGSPXXXXXXXXXXXXXXE--GKKPRIWELSGD 237
PP+ G + IIM R+KL K+ +P E GKKPR+W+L G+
Sbjct: 175 PPT----GSP--MDKIIMEKRRKLREKL-TPTKKTSPSDSKSSKPEKAGKKPRVWDLGGN 227
Query: 238 QRDLSTLEYTKDKPSDSNALNITPDTHLVGKMVGGIKDLXXXXXXXXXXXXXXXXXRAET 297
+D + L+ ++D P D NI ++ LVG M G I+DL AE
Sbjct: 228 SKDAALLDRSRDSPDDVQYQNI--NSELVGTMQGVIRDLDVESEDEADNEDASSEGEAEE 285
Query: 298 SHVSXXXXXXXXXXXMFSLFRGLVGSKNLTKSDMKPILEKMKDHLIAKNVAADIAVKLCD 357
S + S F+G+VG+K ++ +D++P LEKM+DHLI+KNVA++IA KLCD
Sbjct: 286 QVQSKKGKRGG----LLSYFKGIVGAKTMSLADLQPALEKMRDHLISKNVASEIAAKLCD 341
Query: 358 SVALKLEGKVLGTFESVANTVKSTLTDALVQILSPKRRVDILRDALEAKKQGRPFVMAFC 417
SVA L+GK +GTF+S+A+ VK LT++LV+ILSPKRR+DI+RDALE+K+ GRP+ + FC
Sbjct: 342 SVAASLDGKQMGTFDSIASQVKEALTESLVRILSPKRRIDIIRDALESKRNGRPYTIIFC 401
Query: 418 GVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHPAAKHGGR 477
GVNGVGKSTNLAKICFWLIEN+ NVLIAACDTFRAGAVEQLRTH RHL +LHPAAKH GR
Sbjct: 402 GVNGVGKSTNLAKICFWLIENDFNVLIAACDTFRAGAVEQLRTHTRHLNALHPAAKHDGR 461
Query: 478 EMVQLFEKGYGKDPAEIAFRAISHARDMHIDVVLIDTAGRMQDNEPLMRALAKLVKVNQP 537
MVQL+EKGYGKD A IA AI A D +DVVL+DTAGRMQDNEPLMR+L+KL+KVN P
Sbjct: 462 NMVQLYEKGYGKDAAGIAMEAIKFAHDTRVDVVLVDTAGRMQDNEPLMRSLSKLIKVNNP 521
Query: 538 DLLLFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTIDDKVGAAISMT 597
DL+LFVGEALVGNEAVDQLVKFN ++AD+S ++NPH+IDGIVLTKFDTIDDKVGAAISMT
Sbjct: 522 DLVLFVGEALVGNEAVDQLVKFNQSLADYSSNENPHIIDGIVLTKFDTIDDKVGAAISMT 581
Query: 598 YITGQPIVFVGTGQTYTDLKSLNAKAVVNALMK 630
YITGQPIVFVGTGQTY DLK++N AVVN+LMK
Sbjct: 582 YITGQPIVFVGTGQTYADLKAINVNAVVNSLMK 614
>UNIPROTKB|J9P788 [details] [associations]
symbol:SRPR "Signal recognition particle receptor subunit
alpha" species:9615 "Canis lupus familiaris" [GO:0006614
"SRP-dependent cotranslational protein targeting to membrane"
evidence=IEA] [GO:0005785 "signal recognition particle receptor
complex" evidence=IEA] [GO:0005525 "GTP binding" evidence=IEA]
[GO:0005047 "signal recognition particle binding" evidence=IEA]
[GO:0003924 "GTPase activity" evidence=IEA] InterPro:IPR000897
InterPro:IPR003593 InterPro:IPR007222 InterPro:IPR011012
InterPro:IPR013822 Pfam:PF00448 Pfam:PF02881 Pfam:PF04086
PROSITE:PS00300 SMART:SM00382 SMART:SM00962 SMART:SM00963
GO:GO:0005525 GO:GO:0003924 SUPFAM:SSF64356 GO:GO:0006614
SUPFAM:SSF47364 GO:GO:0005785 GO:GO:0005047
GeneTree:ENSGT00550000074936 OMA:KEGSDGP EMBL:AAEX03003376
EMBL:AAEX03003378 EMBL:AAEX03003377 EMBL:AAEX03003379
Ensembl:ENSCAFT00000047935 Uniprot:J9P788
Length = 773
Score = 1529 (543.3 bits), Expect = 7.0e-157, P = 7.0e-157
Identities = 339/615 (55%), Positives = 418/615 (67%)
Query: 39 QERGGNQVFEHNGLVLKHKLDNEFDLVFVVGFQKILQLSYVDKLLDDVHLEFRDKYKNEL 98
+ERGGN F H L LK+KLDN+F+LVFVVGFQKIL L+YVDKL+DDVH FRDKY+ E+
Sbjct: 174 EERGGNNSFTHEALTLKYKLDNQFELVFVVGFQKILTLTYVDKLIDDVHRLFRDKYRTEI 233
Query: 99 G--SDMHLYD--YDFESTYNVLLKEAEEWSKVQACIPKQMRTFEESSKSKKTIASMIIDX 154
S + L + +DF++ + LL+EAEE SK++A P M+ FE+S K+KK + SMI
Sbjct: 234 QQQSALSLLNGTFDFQNDFLRLLREAEESSKIRA--PTTMKKFEDSEKAKKPVRSMIETR 291
Query: 155 XXXXXXXXXXXXXXXAV-ETKVEPVT-----P------PSPVQNGDAGIEEDIIMINRQK 202
A E+ P+ P P+ +NG +E++I R++
Sbjct: 292 GEKPKEKAKNSKKKGAKKESSDGPLATGKAVPAEKSGLPAGPENGVELSKEELIRRKREE 351
Query: 203 LAMKMGSPXXXXXXXXXXXXXXE-GKK-PRIWELSGDQRDLSTLEYTKDKPSDSNALNIT 260
K G E GKK PR+W L G L+Y+ P+ + A +
Sbjct: 352 FIQKHGRGLEKSSKSTKSDAPKEKGKKAPRVWALGGCANK-EVLDYSA--PTTNGAPDAA 408
Query: 261 P--DTHLV-GKMVGG-IKDLXXXXXXXXXXXXXXXXXRAETS-HVSXXXXXXXXXXXMFS 315
P D +L+ G GG ++DL ET+ + S MF
Sbjct: 409 PPEDINLIRGTGPGGQLQDLDCSSSDDE-----------ETAQNASKPSATKGTLGGMFG 457
Query: 316 LFRGLVGSKNLTKSDMKPILEKMKDHLIAKNVAADIAVKLCDSVALKLEGKVLGTFESVA 375
+ +GLVGSK+L++ DM+ +L+KM+DHLIAKNVAADIAV+LC+SVA KLEGKV+GTF +V
Sbjct: 458 MLKGLVGSKSLSREDMESVLDKMRDHLIAKNVAADIAVQLCESVANKLEGKVMGTFSTVT 517
Query: 376 NTVKSTLTDALVQILSPKRRVDILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWL 435
+TVK L ++LVQIL P+RRVD+LRD ++A++ RP+V+ FCGVNGVGKSTNLAKI FWL
Sbjct: 518 STVKQALQESLVQILQPQRRVDMLRDIMDAQRHQRPYVVTFCGVNGVGKSTNLAKISFWL 577
Query: 436 IENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHPAAKHGGREMVQLFEKGYGKDPAEIA 495
+EN +VLIAACDTFRAGAVEQLRTH R L +LHP KH GR MVQLFEKGYGKD A IA
Sbjct: 578 LENGFSVLIAACDTFRAGAVEQLRTHTRRLSALHPPEKHAGRTMVQLFEKGYGKDAAGIA 637
Query: 496 FRAISHARDMHIDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQ 555
AI+ AR+ DVVL+DTAGRMQDN PLM ALAKL+ VN PDL+LFVGEALVGNEAVDQ
Sbjct: 638 MEAIAFARNQGFDVVLVDTAGRMQDNAPLMTALAKLITVNTPDLVLFVGEALVGNEAVDQ 697
Query: 556 LVKFNNAMADHSLSDNPHLIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGTGQTYTD 615
LVKFN A+ADHS++ P LIDGIVLTKFDTIDDKVGAAISMTYIT +PIVFVGTGQTY D
Sbjct: 698 LVKFNRALADHSMAQTPRLIDGIVLTKFDTIDDKVGAAISMTYITSKPIVFVGTGQTYCD 757
Query: 616 LKSLNAKAVVNALMK 630
L+SLNAKAVV ALMK
Sbjct: 758 LRSLNAKAVVAALMK 772
>UNIPROTKB|F1MNJ2 [details] [associations]
symbol:SRPR "Signal recognition particle receptor subunit
alpha" species:9913 "Bos taurus" [GO:0006614 "SRP-dependent
cotranslational protein targeting to membrane" evidence=IEA]
[GO:0005785 "signal recognition particle receptor complex"
evidence=IEA] [GO:0005525 "GTP binding" evidence=IEA] [GO:0005047
"signal recognition particle binding" evidence=IEA] [GO:0003924
"GTPase activity" evidence=IEA] InterPro:IPR000897
InterPro:IPR003593 InterPro:IPR007222 InterPro:IPR011012
InterPro:IPR013822 Pfam:PF00448 Pfam:PF02881 Pfam:PF04086
SMART:SM00382 SMART:SM00962 SMART:SM00963 GO:GO:0005525
GO:GO:0003924 SUPFAM:SSF64356 GO:GO:0006614 SUPFAM:SSF47364
GO:GO:0005785 GO:GO:0005047 IPI:IPI00695733
GeneTree:ENSGT00550000074936 OMA:KEGSDGP EMBL:DAAA02063109
Ensembl:ENSBTAT00000018762 Uniprot:F1MNJ2
Length = 598
Score = 1490 (529.6 bits), Expect = 9.5e-153, P = 9.5e-153
Identities = 328/611 (53%), Positives = 405/611 (66%)
Query: 1 MLDFFTIFSKGGIVLWYFQSASQIFTPSLNALIKSVILQERGGNQVFEHNGLVLKHKLDN 60
MLDFFTIFSKGG+VLW FQ S T +NALI+SV+LQERGGN F H L LK+KLDN
Sbjct: 1 MLDFFTIFSKGGLVLWCFQGVSDSCTGPVNALIRSVLLQERGGNNSFTHEALTLKYKLDN 60
Query: 61 EFDLVFVVGFQKILQLSYVDKLLDDVHLEFRDKYKNELG--SDMHLYD--YDFESTYNVL 116
+F+LVFVVGFQKIL L+YVDKL+DDVH FRDKY+ E+ S + L + +DF++ + L
Sbjct: 61 QFELVFVVGFQKILTLTYVDKLIDDVHRLFRDKYRTEIQQQSALSLLNGTFDFQNDFLRL 120
Query: 117 LKEAEEWSKVQACIPKQMRTFEESSKSKKTIASMIIDXXXXXXXXXXXXXXXXAVE---- 172
L+EAEE SK++A P M+ FE+S K+KK + SMI +
Sbjct: 121 LREAEESSKIRA--PTTMKKFEDSEKAKKPVRSMIETRGEKPKEKAKNNKKNKGAKKEGS 178
Query: 173 ------TKVEPVTPPS-PV--QNGDAGIEEDIIMINRQKLAMKMGSPXXXXXXXXXXXXX 223
+K P PV +NG+ +E+ I R++ K G
Sbjct: 179 DGPLATSKAAPAEKSGLPVGPENGEELSKEEQIRRKREEFIQKHGRGMEKSSKSSKSDAP 238
Query: 224 XE-GKK-PRIWELSGDQRDLSTLEYTKDKPSDSNALNITP--DTHLVGKMVGGIKDLXXX 279
E GKK PR+W L G L+Y+ P+ + A P D +L+ + G + L
Sbjct: 239 KEKGKKAPRVWALGGSANK-EVLDYST--PTTNGAPEAAPPEDINLI-RGTGPGRQLQDL 294
Query: 280 XXXXXXXXXXXXXXRAETSHVSXXXXXXXXXXXMFSLFRGLVGSKNLTKSDMKPILEKMK 339
A+ S + MF + +GLVGSK+LT+ DM+ +L+KM+
Sbjct: 295 DCSSSDDEGA-----AQNS--TKPSATKGTLGGMFGMLKGLVGSKSLTREDMESVLDKMR 347
Query: 340 DHLIAKNVAADIAVKLCDSVALKLEGKVLGTFESVANTVKSTLTDALVQILSPKRRVDIL 399
DHLIAKNVAADIAV+LC+SVA KLEGKV+GTF +V +TVK L ++LVQIL P+RRVD+L
Sbjct: 348 DHLIAKNVAADIAVQLCESVANKLEGKVMGTFSTVTSTVKQALQESLVQILQPQRRVDML 407
Query: 400 RDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLR 459
RD ++A++ RP+V+ FCGVNGVGKSTNLAKI FWL+EN +VLIAACDTFRAGAVEQLR
Sbjct: 408 RDIMDAQRHQRPYVVTFCGVNGVGKSTNLAKISFWLLENGFSVLIAACDTFRAGAVEQLR 467
Query: 460 THVRHLCSLHPAAKHGGREMVQLFEKGYGKDPAEIAFRAISHARDMHIDVVLIDTAGRMQ 519
TH R L +LHP KHGGR MVQLFEKGYGKD A IA AI+ AR+ DVVL+DTAGRMQ
Sbjct: 468 THTRRLSALHPPEKHGGRTMVQLFEKGYGKDAAGIAMEAIAFARNQGFDVVLVDTAGRMQ 527
Query: 520 DNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIV 579
DN PLM ALAKL+ VN PDL+LFVGEALVGNEAVDQLVKFN A+ADHS++ P LIDGIV
Sbjct: 528 DNAPLMTALAKLITVNTPDLVLFVGEALVGNEAVDQLVKFNRALADHSMAQTPRLIDGIV 587
Query: 580 LTKFDTIDDKV 590
LTKFDTIDDKV
Sbjct: 588 LTKFDTIDDKV 598
>ZFIN|ZDB-GENE-030219-11 [details] [associations]
symbol:srpr "signal recognition particle receptor
(docking protein)" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0005525 "GTP binding"
evidence=IEA] [GO:0005785 "signal recognition particle receptor
complex" evidence=IEA] [GO:0006614 "SRP-dependent cotranslational
protein targeting to membrane" evidence=IEA] [GO:0003924 "GTPase
activity" evidence=IEA] [GO:0006184 "GTP catabolic process"
evidence=IEA] [GO:0006810 "transport" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005047
"signal recognition particle binding" evidence=IEA] [GO:0006886
"intracellular protein transport" evidence=IEA] InterPro:IPR000897
InterPro:IPR003593 InterPro:IPR007222 InterPro:IPR011012
InterPro:IPR013822 Pfam:PF00448 Pfam:PF02881 Pfam:PF04086
PROSITE:PS00300 SMART:SM00382 SMART:SM00962 SMART:SM00963
ZFIN:ZDB-GENE-030219-11 GO:GO:0005525 GO:GO:0003924 SUPFAM:SSF64356
GO:GO:0006614 SUPFAM:SSF47364 KO:K13431 GO:GO:0005785 GO:GO:0005047
CTD:6734 GeneTree:ENSGT00550000074936 EMBL:CU469519 IPI:IPI00799782
RefSeq:XP_697518.3 UniGene:Dr.79180 Ensembl:ENSDART00000086823
GeneID:569063 KEGG:dre:569063 NextBio:20889487 Uniprot:E7EZW6
Length = 650
Score = 1386 (493.0 bits), Expect = 9.9e-142, P = 9.9e-142
Identities = 305/545 (55%), Positives = 357/545 (65%)
Query: 104 LYDYDFESTYNVLLKEAEEWSKVQACIPKQMRTFEESSKSKKTIASMI----IDXXXXXX 159
L +Y+F ++ LL+EAEE SK + P MRTFE+S KSKKT+ SMI D
Sbjct: 110 LNNYEFGDDFHRLLREAEESSKAKG--PASMRTFEQSQKSKKTVKSMIETKDADKSKEQG 167
Query: 160 XXXXXXXXXXAV----ETKVEPVTPPSP-VQNGDAGIEEDIIMINRQKLAMKM--GSPXX 212
A + K P V+NG + +D I NR K K G
Sbjct: 168 GKKSKNAKKEAESGGDKAKAASQAPAKKAVENGSESLTQDEIERNRAKFISKQLGGGKPE 227
Query: 213 XXXXXXXXXXXXEGKKPRIWELSGDQRDLSTLEYT-------KDKPSDSNALNITPDTHL 265
+GK R+W++ G + L+Y+ D S+ N P
Sbjct: 228 KPSKSPKPQGKPKGKVNRVWDMGG--KSSGELDYSGTNGNNSNDAKSEDNDATAEPAIQ- 284
Query: 266 VGKMVGGIKDLXXXXXXXXXXXXXXXXXRAETSHVSXXXXXXXXXXXMFSLFRGLVGSKN 325
V M G ++ + + ++ MF + +GLVGSKN
Sbjct: 285 VESMKGDLRGVDYESSDDEDEEVEEEEKKVVVTNTKKTGAKRSGFGGMFGMLKGLVGSKN 344
Query: 326 LTKSDMKPILEKMKDHLIAKNVAADIAVKLCDSVALKLEGKVLGTFESVANTVKSTLTDA 385
LT+ DM+P+L+KMKDHLIAKNVAA+IA +LCDSVA KLEGKV+GTF +VA+TVK L D+
Sbjct: 345 LTQEDMEPVLDKMKDHLIAKNVAAEIASQLCDSVAKKLEGKVMGTFTTVASTVKQALQDS 404
Query: 386 LVQILSPKRRVDILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIA 445
LVQIL PKRRVDILRD LEA+ Q +PFV+ FCGVNGVGKSTNLAKI +WLIEN VLIA
Sbjct: 405 LVQILQPKRRVDILRDVLEARSQRKPFVITFCGVNGVGKSTNLAKISYWLIENGFTVLIA 464
Query: 446 ACDTFRAGAVEQLRTHVRHLCSLHPAAKHGGREMVQLFEKGYGKDPAEIAFRAISHARDM 505
ACDTFRAGAVEQLRTH R L SLHP KHGG+ VQLFEKGYGKD A IA AI+ AR+
Sbjct: 465 ACDTFRAGAVEQLRTHQRRLNSLHPPEKHGGQPAVQLFEKGYGKDAAGIAMEAIAFARNQ 524
Query: 506 HIDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQLVKFNNAMAD 565
DVVLIDTAGRMQDN PLM ALAKL+ VN PDL+LFVGEALVGNEAVDQLVKFN A+AD
Sbjct: 525 GFDVVLIDTAGRMQDNAPLMTALAKLIAVNTPDLVLFVGEALVGNEAVDQLVKFNRALAD 584
Query: 566 HSLSDNPHLIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGTGQTYTDLKSLNAKAVV 625
HS SD P LIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGTGQTY+DL+SLNA+AVV
Sbjct: 585 HSKSDKPRLIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGTGQTYSDLRSLNARAVV 644
Query: 626 NALMK 630
+ALMK
Sbjct: 645 SALMK 649
Score = 490 (177.5 bits), Expect = 8.8e-47, P = 8.8e-47
Identities = 142/406 (34%), Positives = 193/406 (47%)
Query: 1 MLDFFTIFSKGGIVLWYFQSA--SQIFTPSLNALIKSVILQERGGNQVFEHNGLVLKHKL 58
MLDFF IFSKGGIVLW FQ A ++ FT +NALI+SVILQER GN F HN L LK+KL
Sbjct: 1 MLDFFAIFSKGGIVLWCFQGAGVTESFTGPVNALIRSVILQERSGNNFFTHNTLSLKYKL 60
Query: 59 DNEFDLVFVVGFQKILQLSYVDKLLDDVHLEFRDKYKNEL---GS-DMHLYDYDFESTYN 114
DNEF+LVFVVGFQ L L YVDK +DDV L FRD+YKNEL G+ L +Y+F ++
Sbjct: 61 DNEFELVFVVGFQANLMLKYVDKFIDDVQLHFRDRYKNELEQRGALKFLLNNYEFGDDFH 120
Query: 115 VLLKEAEEWSKVQACIPKQMRTFEESSKSKKTIASMI----IDXXXXXXXXXXXXXXXXA 170
LL+EAEE SK + P MRTFE+S KSKKT+ SMI D A
Sbjct: 121 RLLREAEESSKAKG--PASMRTFEQSQKSKKTVKSMIETKDADKSKEQGGKKSKNAKKEA 178
Query: 171 V----ETKVEPVTPPSP-VQNGDAGIEEDIIMINRQKLAMKM--GSPXXXXXXXXXXXXX 223
+ K P V+NG + +D I NR K K G
Sbjct: 179 ESGGDKAKAASQAPAKKAVENGSESLTQDEIERNRAKFISKQLGGGKPEKPSKSPKPQGK 238
Query: 224 XEGKKPRIWELSGDQRDLSTLEYTKDKPSDSNALNITPDTHLVGKMVGGIKDLXXXXXXX 283
+GK R+W++ G + L+Y+ ++SN + D + ++ +
Sbjct: 239 PKGKVNRVWDMGG--KSSGELDYSGTNGNNSNDAK-SEDNDATAEPAIQVESMKGDLRGV 295
Query: 284 XXXXXXXXXXRAETSHVSXXXXXXXXXXXMFSLFRGLVGS-KNL--TKSDMKPILEKMKD 340
E S F G+ G K L +K+ + +E + D
Sbjct: 296 DYESSDDEDEEVEEEEKKVVVTNTKKTGAKRSGFGGMFGMLKGLVGSKNLTQEDMEPVLD 355
Query: 341 HLIAKNVAADIAVKLCDSVALKLEGKVLGTFESVANTVKSTLTDAL 386
+ +A ++A ++ + + K+ G TV ST+ AL
Sbjct: 356 KMKDHLIAKNVAAEIASQLCDSVAKKLEGKVMGTFTTVASTVKQAL 401
>WB|WBGene00009521 [details] [associations]
symbol:F38A1.8 species:6239 "Caenorhabditis elegans"
[GO:0005525 "GTP binding" evidence=IEA] [GO:0006614 "SRP-dependent
cotranslational protein targeting to membrane" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0003924
"GTPase activity" evidence=IEA] [GO:0005047 "signal recognition
particle binding" evidence=IEA] [GO:0005785 "signal recognition
particle receptor complex" evidence=IEA] [GO:0006184 "GTP catabolic
process" evidence=IEA] [GO:0006886 "intracellular protein
transport" evidence=IEA] [GO:0000003 "reproduction" evidence=IMP]
[GO:0040010 "positive regulation of growth rate" evidence=IMP]
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0018996
"molting cycle, collagen and cuticulin-based cuticle" evidence=IMP]
[GO:0048477 "oogenesis" evidence=IMP] InterPro:IPR000897
InterPro:IPR003593 InterPro:IPR007222 InterPro:IPR011012
InterPro:IPR013822 Pfam:PF00448 Pfam:PF02881 Pfam:PF04086
PROSITE:PS00300 SMART:SM00382 SMART:SM00962 SMART:SM00963
GO:GO:0005525 GO:GO:0009792 GO:GO:0040007 GO:GO:0040010
GO:GO:0002119 GO:GO:0018996 GO:GO:0003924 GO:GO:0048477
SUPFAM:SSF64356 GO:GO:0006614 SUPFAM:SSF47364 KO:K13431
GO:GO:0005785 GO:GO:0005047 GeneTree:ENSGT00550000074936
OMA:KEGSDGP EMBL:FO080472 EMBL:FO081324 EMBL:FO081776
RefSeq:NP_741303.2 ProteinModelPortal:G4RYA5 SMR:G4RYA5
EnsemblMetazoa:F38A1.8 GeneID:185438 KEGG:cel:CELE_F38A1.8
CTD:185438 WormBase:F38A1.8 NextBio:928280 Uniprot:G4RYA5
Length = 625
Score = 1325 (471.5 bits), Expect = 2.9e-135, P = 2.9e-135
Identities = 293/643 (45%), Positives = 400/643 (62%)
Query: 1 MLDFFTIFSKGGIVLWYFQSASQIFTPSLN-ALIKSVILQERGGNQVFEHNGLVLKHKLD 59
M++ F+IF+KGG+ LW +Q FT ++N LIK +++ERG + + +K +LD
Sbjct: 1 MIELFSIFTKGGVCLWNYQEGDYNFTEAINNELIKGTLMEERGNSGQKKVGNYTMKFQLD 60
Query: 60 NEFDLVFVVGFQKILQLSYVDKLLDDVHLEFRDKYKNELGSDMHLYD-----Y-DFESTY 113
NE++++F+V +Q I+ L+Y +KLL+ V FR ++ L + L Y +F+ T+
Sbjct: 61 NEYNVIFLVIYQTIVNLNYAEKLLNLVVDSFRGEFSENLREETALTTPPSNIYGNFDETF 120
Query: 114 NVLLKEAEEWSKVQACIPKQMRTFEESSKSKKTIASMIIDXXXXXXXXXXXXXXXXAVET 173
+ +L EA + ++ K+ +TF+ES+KS+KTI S+I+ +
Sbjct: 121 HEVLSEAAKSARATENTVKKPKTFQESAKSQKTIDSLIVSRPGQKNAEKSAKNAEKTPKK 180
Query: 174 KVEPVTPPSPVQNGDA---GIEEDIIMINRQKLAMKMGSPXXXXXXXXXXXXXXEGKKPR 230
VE S A G ++ ++ R ++ KM +GK+ R
Sbjct: 181 PVESAEESSATDYNSASPPGSPDEEVLRRRDQMFKKMSGNTKKKGPEEPTSPKPKGKQAR 240
Query: 231 IWELSGDQRDLSTLEYTKDKPSDSNALNITPDTHL--VGKMVGGIK-DLXXXXXXXXXXX 287
+W LSG D+ L+ + K +D NA + + + + + +G +K DL
Sbjct: 241 VWALSGKPADVKNLDRSDPKENDENAADEEKNRFVESMKEQIGTLKGDLKSLQESDDEDE 300
Query: 288 XXXXXXRAETSHVSXXXXXXXXXXXMFSLFRGLVGSKNLTKSDMKPILEKMKDHLIAKNV 347
+ S FS+ +GLVG K L+ D+ P++EKM+++LI KNV
Sbjct: 301 DDNDQQVVKQS------------GGWFSMIKGLVGEKKLSAEDLNPLIEKMRENLILKNV 348
Query: 348 AADIAVKLCDSVALKLEGKVLGTFESVANTVKSTLTDALVQILSPKRRVDILRDALEAKK 407
A++ A K+C SV KLEGKV+ F VA VK+ + ++LVQ+L+PK RVDILRD +EAK+
Sbjct: 349 ASEPAEKICQSVVSKLEGKVVNNFSRVAQEVKTAVRESLVQLLTPKHRVDILRDVIEAKR 408
Query: 408 QGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCS 467
GRP+V+ FCGVNGVGKSTNLAKI FWL EN VLIAA DTFRAGAVEQLRTH R+L
Sbjct: 409 DGRPYVIVFCGVNGVGKSTNLAKITFWLTENKHRVLIAAGDTFRAGAVEQLRTHARYLND 468
Query: 468 LHPAAKHGGREMVQLFEKGYGKDPAEIAFRAISHARDMHIDVVLIDTAGRMQDNEPLMRA 527
LH + V L E+GYGKDPA +A AI A + DVVL+DTAGRMQDNEPLMR
Sbjct: 469 LH-------KNSVLLHEQGYGKDPAGLAAAAIKKAAEQDFDVVLVDTAGRMQDNEPLMRE 521
Query: 528 LAKLVKVNQPDLLLFVGEALVGNEAVDQLVKFNNAMADH-SLSDNPHLIDGIVLTKFDTI 586
LAKL++VN+PDL+LFVGEALVGNEAVDQLVKFN A+A+H S P LIDGIVLTKFDTI
Sbjct: 522 LAKLIRVNEPDLVLFVGEALVGNEAVDQLVKFNEALANHASPGQKPRLIDGIVLTKFDTI 581
Query: 587 DDKVGAAISMTYITGQPIVFVGTGQTYTDLKSLNAKAVVNALM 629
DDKVGAA+SMTYITGQPIVFVG GQTY+DL++LN AVV++L+
Sbjct: 582 DDKVGAAVSMTYITGQPIVFVGCGQTYSDLRNLNVGAVVHSLL 624
>TAIR|locus:2118701 [details] [associations]
symbol:AT4G30600 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003924 "GTPase
activity" evidence=IEA] [GO:0005047 "signal recognition particle
binding" evidence=IEA] [GO:0005525 "GTP binding" evidence=IEA;ISS]
[GO:0005622 "intracellular" evidence=IEA] [GO:0005786 "signal
recognition particle, endoplasmic reticulum targeting"
evidence=ISS] [GO:0006184 "GTP catabolic process" evidence=IEA]
[GO:0006605 "protein targeting" evidence=ISS] [GO:0006614
"SRP-dependent cotranslational protein targeting to membrane"
evidence=IEA] [GO:0006886 "intracellular protein transport"
evidence=IEA] [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0005783 "endoplasmic reticulum" evidence=IDA]
[GO:0006623 "protein targeting to vacuole" evidence=RCA]
[GO:0006944 "cellular membrane fusion" evidence=RCA] [GO:0016192
"vesicle-mediated transport" evidence=RCA] [GO:0048193 "Golgi
vesicle transport" evidence=RCA] InterPro:IPR000897
InterPro:IPR003593 InterPro:IPR007222 InterPro:IPR011012
InterPro:IPR013822 Pfam:PF00448 Pfam:PF02881 Pfam:PF04086
PROSITE:PS00300 SMART:SM00382 SMART:SM00962 GO:GO:0005525
GO:GO:0005783 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0003924
EMBL:AL161577 SUPFAM:SSF64356 eggNOG:COG0552 GO:GO:0006614
SUPFAM:SSF47364 KO:K13431 GO:GO:0005785 GO:GO:0005047
HOGENOM:HOG000201671 OMA:LILWSSC EMBL:AY065066 EMBL:AY133612
IPI:IPI00534083 PIR:A85358 RefSeq:NP_194789.1 UniGene:At.4581
HSSP:P83749 ProteinModelPortal:Q9M0A0 SMR:Q9M0A0 STRING:Q9M0A0
PaxDb:Q9M0A0 PRIDE:Q9M0A0 EnsemblPlants:AT4G30600.1 GeneID:829183
KEGG:ath:AT4G30600 TAIR:At4g30600 InParanoid:Q9M0A0
PhylomeDB:Q9M0A0 ProtClustDB:CLSN2685629 ArrayExpress:Q9M0A0
Genevestigator:Q9M0A0 Uniprot:Q9M0A0
Length = 634
Score = 957 (341.9 bits), Expect = 2.1e-111, Sum P(2) = 2.1e-111
Identities = 187/316 (59%), Positives = 242/316 (76%)
Query: 315 SLFRGLVGSKNLTKSDMKPILEKMKDHLIAKNVAADIAVKLCDSVALKLEGKVLGTFESV 374
S+F+ + G NL ++D+ P L+ +K+ L+ KNVA +IA KLC+SV LEGK L +F +
Sbjct: 332 SVFQSITGKANLERTDLGPALKALKERLMTKNVAEEIAEKLCESVEASLEGKKLSSFTRI 391
Query: 375 ANTVKSTLTDALVQILSPKRRVDILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFW 434
++TV++ + DALV+IL+P+R +DILRD AK+Q +P+V+ F GVNGVGKSTNLAK+ +W
Sbjct: 392 SSTVQAAMEDALVRILTPRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYW 451
Query: 435 LIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHPAAKHGGREMVQLFEKGYGKDPAEI 494
L ++ ++V++AACDTFR+GAVEQLRTH R L + +FEKGY KDPA +
Sbjct: 452 LQQHKVSVMMAACDTFRSGAVEQLRTHARRL-------------QIPIFEKGYEKDPAVV 498
Query: 495 AFRAISHARDMHIDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVD 554
A AI A DVVL+DTAGRMQDNEPLMRAL+KL+ +NQPDL+LFVGEALVGN+AVD
Sbjct: 499 AKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLINLNQPDLVLFVGEALVGNDAVD 558
Query: 555 QLVKFNNAMADHSLSDNPHLIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGTGQTYT 614
QL KFN ++D S S NP LIDGI+LTKFDTIDDKVGAA+SM YI+G P++FVG GQ+YT
Sbjct: 559 QLSKFNQKLSDLSTSGNPRLIDGILLTKFDTIDDKVGAALSMVYISGSPVMFVGCGQSYT 618
Query: 615 DLKSLNAKAVVNALMK 630
DLK LN KA+V L+K
Sbjct: 619 DLKKLNVKAIVKTLLK 634
Score = 163 (62.4 bits), Expect = 2.1e-111, Sum P(2) = 2.1e-111
Identities = 45/126 (35%), Positives = 66/126 (52%)
Query: 1 MLDFFTIFSKGGIVLWYFQSASQIFTPS-LNALIKSVILQERGGNQVFEHNG----LVLK 55
ML+ IF++GG++LW + S ++ LI+S +L+ER G F ++ LK
Sbjct: 1 MLEQLLIFTRGGLILWTCKEIGNALKGSPIDTLIRSCLLEERSGAVSFNYDAPGAAYTLK 60
Query: 56 HKLDNEFDLVFVVGFQKILQLSYVDKLLDDVHLEFRDKYKNELGSDMHLYDYDFESTYNV 115
N+ LVFV +Q+IL L YVD LL V F + Y + + YD DF+ T+
Sbjct: 61 WTFHNDLGLVFVAVYQRILHLLYVDDLLSMVKQSFSEVYDPKRMA----YD-DFDETFRQ 115
Query: 116 LLKEAE 121
L EAE
Sbjct: 116 LRIEAE 121
Score = 40 (19.1 bits), Expect = 7.2e-08, Sum P(2) = 7.2e-08
Identities = 7/17 (41%), Positives = 9/17 (52%)
Query: 506 HIDVVLIDTAGRMQDNE 522
H+D+V D M D E
Sbjct: 284 HVDIVAADQGESMMDKE 300
>DICTYBASE|DDB_G0277377 [details] [associations]
symbol:srpR "signal recognition particle receptor
alpha subunit" species:44689 "Dictyostelium discoideum" [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0006886
"intracellular protein transport" evidence=IEA] [GO:0006810
"transport" evidence=IEA] [GO:0006614 "SRP-dependent
cotranslational protein targeting to membrane" evidence=IEA]
[GO:0006184 "GTP catabolic process" evidence=IEA] [GO:0005785
"signal recognition particle receptor complex" evidence=IEA]
[GO:0005525 "GTP binding" evidence=IEA] [GO:0005047 "signal
recognition particle binding" evidence=IEA;ISS] [GO:0003924 "GTPase
activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0045047 "protein targeting to ER" evidence=ISS]
[GO:0005789 "endoplasmic reticulum membrane" evidence=IEA;ISS]
[GO:0016020 "membrane" evidence=IEA] [GO:0005783 "endoplasmic
reticulum" evidence=IEA] [GO:0044351 "macropinocytosis"
evidence=RCA] InterPro:IPR000897 InterPro:IPR003593
InterPro:IPR007222 InterPro:IPR011012 InterPro:IPR013822
Pfam:PF00448 Pfam:PF02881 Pfam:PF04086 PROSITE:PS00300
SMART:SM00382 SMART:SM00962 dictyBase:DDB_G0277377 GO:GO:0005525
GO:GO:0005789 GO:GO:0003924 GenomeReviews:CM000151_GR
EMBL:AAFI02000019 SUPFAM:SSF64356 eggNOG:COG0552 GO:GO:0006614
SUPFAM:SSF47364 GO:GO:0045047 GO:GO:0005785 GO:GO:0005047
HSSP:P08240 RefSeq:XP_642799.1 ProteinModelPortal:Q54ZR7
STRING:Q54ZR7 EnsemblProtists:DDB0252680 GeneID:8620992
KEGG:ddi:DDB_G0277377 OMA:LILWSSC ProtClustDB:CLSZ2846855
Uniprot:Q54ZR7
Length = 615
Score = 842 (301.5 bits), Expect = 2.1e-107, Sum P(2) = 2.1e-107
Identities = 172/315 (54%), Positives = 224/315 (71%)
Query: 317 FRGLVGSKNLTKSDMKPILEKMKDHLIAKNVAADIAVKLCDSVALKLEGKVLGTFESVAN 376
F L G++ + K D++PIL K HL KNVA D+A K+ S+ LEGK L TF+ V +
Sbjct: 314 FNVLTGNRVIDKQDLEPILADFKLHLTKKNVAPDVADKIVQSIGTGLEGKKLATFQGVTS 373
Query: 377 TVKSTLTDALVQILSPKRRVDILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLI 436
VK + D + +IL+PKR +DILR+ ++A K RP+ + F GVNGVGKSTNLAK+C+WL
Sbjct: 374 VVKQQMEDTITRILTPKRNIDILRE-VQAVKGKRPYSIVFSGVNGVGKSTNLAKVCYWLT 432
Query: 437 ENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHPAAKHGGREMVQLFEKGYGKDPAEIAF 496
N ++AACDTFR+GA+EQL+TH L ++H LFE+GY KD A +A
Sbjct: 433 ANGYKCMLAACDTFRSGAIEQLKTHADRL-NVH------------LFERGYSKDAASVAQ 479
Query: 497 RAISHARDMHIDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQL 556
AI+ A+D DVVLIDT GRMQ+NEPLM+AL+KLV N DL+LFVGEALVGN+ VDQL
Sbjct: 480 DAIAFAKDTGYDVVLIDTTGRMQNNEPLMKALSKLVNQNNVDLVLFVGEALVGNDGVDQL 539
Query: 557 VKFNNAMADHSLSDNPHL--IDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGTGQTYT 614
KF+ +++ + + H+ IDGI+LTKFDTIDDKVGAAISM Y TG PI+F+GTGQ YT
Sbjct: 540 TKFDKSLSLLANTTQTHIRTIDGIILTKFDTIDDKVGAAISMVYSTGHPILFLGTGQNYT 599
Query: 615 DLKSLNAKAVVNALM 629
DLK +N K+VV +L+
Sbjct: 600 DLKRMNIKSVVKSLL 614
Score = 240 (89.5 bits), Expect = 2.1e-107, Sum P(2) = 2.1e-107
Identities = 59/149 (39%), Positives = 84/149 (56%)
Query: 1 MLDFFTIFSKGGIVLWYFQSASQIFTPSLNALIKSVILQERGGNQVFEHNGLVLKHKLDN 60
MLD FTI +KGGIVLW + A +P +N+LIK V+L+ER F+ + LK N
Sbjct: 1 MLDSFTILTKGGIVLWSKEFAKIKGSP-INSLIKKVLLEERSAETSFQIDSYSLKWTFSN 59
Query: 61 EFDLVFVVGFQKILQLSYVDKLLDDVHLEFRDKYKNEL-----GSDMHLYDYDFESTYNV 115
EFDL+FVV +QKI L Y+++LL V F YK+ L SD + D E + V
Sbjct: 60 EFDLIFVVVYQKIFTLLYIEELLTTVKKRFIKMYKDLLLKLKESSDFIIVDKFQEFNFEV 119
Query: 116 LLKEAEEWSKVQACIPKQMRTFEESSKSK 144
+L++ E SK+Q + +E++ K K
Sbjct: 120 ILEDVENRSKLQQTSNSAPKKYEDTDKGK 148
Score = 41 (19.5 bits), Expect = 2.1e-86, Sum P(2) = 2.1e-86
Identities = 10/40 (25%), Positives = 21/40 (52%)
Query: 111 STYNVLLKEAEEWSKVQACIPKQMRTFEESSKSKKTIASM 150
S Y +K+ + + + K+ RT+E+ SKK + ++
Sbjct: 230 SGYKKKVKDTPD-KQASSSTGKKARTWEDGKLSKKELEAL 268
>ASPGD|ASPL0000006202 [details] [associations]
symbol:AN6627 species:162425 "Emericella nidulans"
[GO:0006184 "GTP catabolic process" evidence=IEA] [GO:0005785
"signal recognition particle receptor complex" evidence=IEA]
[GO:0003924 "GTPase activity" evidence=IEA] [GO:0006614
"SRP-dependent cotranslational protein targeting to membrane"
evidence=IEA] [GO:0045047 "protein targeting to ER" evidence=IEA]
[GO:0005525 "GTP binding" evidence=IEA] [GO:0005047 "signal
recognition particle binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA] [GO:0005789
"endoplasmic reticulum membrane" evidence=IEA] InterPro:IPR000897
InterPro:IPR003593 InterPro:IPR007222 InterPro:IPR011012
InterPro:IPR013822 Pfam:PF00448 Pfam:PF02881 Pfam:PF04086
PROSITE:PS00300 SMART:SM00382 SMART:SM00962 SMART:SM00963
GO:GO:0005525 GO:GO:0003924 EMBL:BN001301 SUPFAM:SSF64356
EMBL:AACD01000110 eggNOG:COG0552 GO:GO:0006614 SUPFAM:SSF47364
KO:K13431 GO:GO:0005785 GO:GO:0005047 HOGENOM:HOG000201671
OrthoDB:EOG42Z7ZQ RefSeq:XP_664231.1 ProteinModelPortal:Q5AYK3
STRING:Q5AYK3 EnsemblFungi:CADANIAT00007408 GeneID:2870372
KEGG:ani:AN6627.2 OMA:THETGRR Uniprot:Q5AYK3
Length = 636
Score = 855 (306.0 bits), Expect = 1.8e-85, P = 1.8e-85
Identities = 221/654 (33%), Positives = 333/654 (50%)
Query: 1 MLDFFTIFSKGGIVLWYFQSASQIFTPSLNALIKSVILQERGGNQ--------VFEHNGL 52
ML+ F I S G+VLW +S + + +N+L+ V ++E+ Q +F+
Sbjct: 1 MLEAFEILSTSGVVLWS-KSYAPVGAHVVNSLVNDVFIEEKAQLQNATNSVSPIFKKEKY 59
Query: 53 VLKHKLDNEFDLVFVVGFQKILQLSYVDKLLDDVHLEFRDKYKNELGSDM-HLYDYDFES 111
LK + +F+L+FV +Q +L L ++DKLLD++ F D YK +L S+ + Y F+
Sbjct: 60 TLKWRKSKDFNLIFVAVYQSLLHLGWIDKLLDNISTIFVDLYKTQLQSERARIVQYPFDK 119
Query: 112 TYNVLLKEAEEWSKVQACIPKQMRTFEESSKSKKTIASMIIDXXXXXXXXXXXXXXXXAV 171
++ ++E E+ A + + ++ K + S
Sbjct: 120 YFDQQVQELED--NATAGFASEAPAADAEAR-KDPLVSADNGAQPQAALSAATSDEGSPP 176
Query: 172 ETK-VEPVTPPSP--VQNGDAGIEEDIIMINRQKLAMKMGSPXXXXXXXXXXXXXXEGKK 228
+T + ++ PS + G AG I +K A + GKK
Sbjct: 177 QTPDISRLSSPSSSHILTGKAG-PGGRISRRARKAANASATASSGDEQVRKGKTPKSGKK 235
Query: 229 PRIWELSG--DQRDLSTLEYTKDKPSDSNALNITPDTHLV-----GKMVGGIKDLXXXXX 281
R+W+ G D+ D L+Y+ +D + P V G+ G + +
Sbjct: 236 LRVWDADGLADEDDGRVLDYSAPAEADDA---VAPTVEAVAQESWGRRTGKGQFVLKDLG 292
Query: 282 XXXXXXXXXXXXRAETSHVSXXXXXXXXXXXMFSLFRGLVGSKNLTKSDMKPILEKMKDH 341
+ TS + L R +VG K LT++D++ L+ M+DH
Sbjct: 293 DEVHSILENADNKKATSSAPSGLVGSGFSA-IGGLLRNIVGGKILTEADLEKPLKAMEDH 351
Query: 342 LIAKNVAADIAVKLCDSVALKLEGKVLGTFESVANTVKSTLTDALVQILSPKRRVDILRD 401
L+ KNVA + AV+LC+ V +L GK G F+SV +KS + +L +IL+P +D+L +
Sbjct: 352 LLKKNVAREAAVRLCEGVKQELVGKKTGNFQSVDAALKSAMESSLRKILTPTSSLDLLHE 411
Query: 402 ---ALEAKKQG--RPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVE 456
+A KQG RP+V++ GVNGVGKSTNL KIC++L++NN +LIAACDTFR+GAVE
Sbjct: 412 IDTVTKANKQGTSRPYVISIVGVNGVGKSTNLGKICYFLLQNNYRILIAACDTFRSGAVE 471
Query: 457 QLRTHVRHLCSLHPAAKHGGREMVQLFEKGYGKDPAEIAFRAISHARDMHIDVVLIDTAG 516
QLR H R+L L G V+L+EKGYGKD A +A A+ + + DVVLIDTAG
Sbjct: 472 QLRVHARNLKELSARENVGA---VELYEKGYGKDAANVAKDAVEYGAANNFDVVLIDTAG 528
Query: 517 RMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLID 576
R +++ LM +L K K QP+ + VGEALVG ++V Q FN A N +D
Sbjct: 529 RRHNDQRLMSSLEKFAKFAQPNKIFMVGEALVGTDSVMQARNFNQAFGT---GRN---LD 582
Query: 577 GIVLTKFDTIDDKVGAAISMTYITGQPIVFVGTGQTYTDLKSLNAKAVVNALMK 630
G +++K DT+ D VG +SM + TG PIVF+G GQ Y DL+ L+ VN LMK
Sbjct: 583 GFIISKCDTVGDMVGTLVSMVHATGIPIVFLGVGQHYGDLRGLSVPWAVNLLMK 636
>POMBASE|SPBC3B9.03 [details] [associations]
symbol:SPBC3B9.03 "signal recognition particle receptor
alpha subunit Srp101 (predicted)" species:4896 "Schizosaccharomyces
pombe" [GO:0003924 "GTPase activity" evidence=ISM] [GO:0005047
"signal recognition particle binding" evidence=ISO] [GO:0005525
"GTP binding" evidence=ISM] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005785 "signal recognition particle receptor complex"
evidence=ISO] [GO:0005829 "cytosol" evidence=IDA] [GO:0006614
"SRP-dependent cotranslational protein targeting to membrane"
evidence=IC] InterPro:IPR000897 InterPro:IPR003593
InterPro:IPR007222 InterPro:IPR011012 InterPro:IPR013822
Pfam:PF00448 Pfam:PF02881 Pfam:PF04086 PROSITE:PS00300
SMART:SM00382 SMART:SM00962 SMART:SM00963 PomBase:SPBC3B9.03
GO:GO:0005525 GO:GO:0005829 GO:GO:0005634 EMBL:CU329671
GO:GO:0003924 GenomeReviews:CU329671_GR SUPFAM:SSF64356
eggNOG:COG0552 GO:GO:0006614 SUPFAM:SSF47364 KO:K13431
GO:GO:0005785 GO:GO:0005047 HSSP:Q6MTB9 HOGENOM:HOG000201671
PIR:T40342 RefSeq:NP_596660.1 ProteinModelPortal:O43032
STRING:O43032 EnsemblFungi:SPBC3B9.03.1 GeneID:2540909
KEGG:spo:SPBC3B9.03 OMA:PVEANND OrthoDB:EOG42Z7ZQ NextBio:20802024
Uniprot:O43032
Length = 547
Score = 679 (244.1 bits), Expect = 5.9e-78, Sum P(2) = 5.9e-78
Identities = 140/318 (44%), Positives = 202/318 (63%)
Query: 314 FSLFRGLVGSKNLTKSDMKPILEKMKDHLIAKNVAADIAVKLCDSVALKLEGKVLGTFES 373
FSLF L+G K L + D+ PIL++M++HL KNVA IA++LC+SV L K +G+F++
Sbjct: 244 FSLFSNLIGGKYLKEEDLSPILKQMQEHLTKKNVANSIALELCESVKASLINKKVGSFDT 303
Query: 374 VANTVKSTLTDALVQILSPKRRVDILRDALEAKK-QGRPFVMAFCGVNGVGKSTNLAKIC 432
V NTV D L QIL+P +D+L +K + RP+ ++ GVNGVGKST LAKI
Sbjct: 304 VKNTVNKAFRDRLTQILTPSTSLDLLHSIRSVRKNENRPYTISLIGVNGVGKSTTLAKIA 363
Query: 433 FWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHPAAKHGGREMVQLFEKGYGKDPA 492
+WL+ NN +L+AACDTFR+GA+EQL HV++L SL ++ ++LF +GYGKD +
Sbjct: 364 YWLLSNNFRILVAACDTFRSGAIEQLGVHVKNLQSLKGSS-------IELFAQGYGKDSS 416
Query: 493 EIAFRAISHARDMHIDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEA 552
+ A+ +A+ DV+LIDTAGR +++ LM +L K K + D + V EALVG ++
Sbjct: 417 FVVKNAVEYAKQNSFDVILIDTAGRRHNDQRLMGSLEKFTKATKLDKIFQVAEALVGTDS 476
Query: 553 VDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGTGQT 612
+ Q F SL P +DG +++K DT+ VG + M Y PI+FVG GQT
Sbjct: 477 LAQAKHFQA-----SLYHRP--LDGFIISKVDTVGQLVGVMVGMVYAVRVPIIFVGIGQT 529
Query: 613 YTDLKSLNAKAVVNALMK 630
Y+DL++L+ VV+ LMK
Sbjct: 530 YSDLRTLSVDWVVDQLMK 547
Score = 124 (48.7 bits), Expect = 5.9e-78, Sum P(2) = 5.9e-78
Identities = 31/99 (31%), Positives = 51/99 (51%)
Query: 1 MLDFFTIFSKGGIVLWYFQSASQIFTPSLNALIKSVILQE-RGGNQVFEHNGLVLKHKLD 59
M+D F I +KGGIVLW ++ S + L L L E R N + ++++
Sbjct: 1 MIDLFAIVNKGGIVLWK-KTNSLVNLKCLQVLFHEAFLSEQRTVNNTVTFDRYTMQYQEA 59
Query: 60 NEFDLVFVVGFQKILQLSYVDKLLDDVHLEFRDKYKNEL 98
++ +VFVV FQ + ++Y LL+ H F + +K +L
Sbjct: 60 TQYSIVFVVVFQDLKCMAYSQSLLNSAHNIFLNLFKEKL 98
>SGD|S000002700 [details] [associations]
symbol:SRP101 "Signal recognition particle (SRP) receptor
alpha subunit" species:4932 "Saccharomyces cerevisiae" [GO:0005525
"GTP binding" evidence=IEA;IPI] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005783 "endoplasmic reticulum" evidence=IEA]
[GO:0016020 "membrane" evidence=IEA] [GO:0006614 "SRP-dependent
cotranslational protein targeting to membrane" evidence=IEA;IC;TAS]
[GO:0005047 "signal recognition particle binding" evidence=ISS;IMP]
[GO:0005785 "signal recognition particle receptor complex"
evidence=TAS] [GO:0005789 "endoplasmic reticulum membrane"
evidence=IEA;IDA] [GO:0045047 "protein targeting to ER"
evidence=IMP] [GO:0006810 "transport" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR000897 InterPro:IPR003593 InterPro:IPR011012
InterPro:IPR013822 Pfam:PF00448 Pfam:PF02881 PROSITE:PS00300
SMART:SM00382 SMART:SM00962 SGD:S000002700 GO:GO:0005525
EMBL:BK006938 GO:GO:0017111 SUPFAM:SSF64356 EMBL:U51031
eggNOG:COG0552 GO:GO:0006614 SUPFAM:SSF47364 RefSeq:NP_010578.3
GeneID:851886 KEGG:sce:YDR292C KO:K13431 RefSeq:NP_010582.3
GeneID:851890 KEGG:sce:YDR296W GO:GO:0005785 TCDB:3.A.5.8.1
GO:GO:0005047 PDB:1NRJ PDBsum:1NRJ HOGENOM:HOG000201671
GeneTree:ENSGT00550000074936 OrthoDB:EOG42Z7ZQ EMBL:M77274
PIR:S70121 ProteinModelPortal:P32916 SMR:P32916 DIP:DIP-1672N
IntAct:P32916 MINT:MINT-364995 STRING:P32916 PaxDb:P32916
PeptideAtlas:P32916 EnsemblFungi:YDR292C CYGD:YDR292c OMA:HVENLAQ
EvolutionaryTrace:P32916 NextBio:969862 Genevestigator:P32916
GermOnline:YDR292C InterPro:IPR015284 Pfam:PF09201 Uniprot:P32916
Length = 621
Score = 657 (236.3 bits), Expect = 1.8e-64, P = 1.8e-64
Identities = 148/331 (44%), Positives = 207/331 (62%)
Query: 316 LFRGLVGSKNLTKSDMKPILEKMKDHLIAKNVAADIAVKLCDSVALKLEGKVLGTFESVA 375
L + ++G+K + +SD+K +LEK+ LI KNVA + A L V+ L G + SV
Sbjct: 296 LQKHVLGNKTINESDLKSVLEKLTQQLITKNVAPEAADYLTQQVSHDLVGSKTANWTSVE 355
Query: 376 NTVKSTLTDALVQILSPKRRVDILRD--ALEAKK--QGR--PFVMAFCGVNGVGKSTNLA 429
NT + +LT AL QIL+P VD+LR+ + +KK +G+ P+V + GVNGVGKSTNL+
Sbjct: 356 NTARESLTKALTQILTPGVSVDLLREIQSKRSKKDEEGKCDPYVFSIVGVNGVGKSTNLS 415
Query: 430 KICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSL----HPAA---KHG--GREMV 480
K+ FWL++NN VLI ACDTFR+GAVEQLR HV +L L H K G G + V
Sbjct: 416 KLAFWLLQNNFKVLIVACDTFRSGAVEQLRVHVENLAQLMDDSHVRGSKNKRGKTGNDYV 475
Query: 481 QLFEKGYGKDP--AEIAFRAISHARDMHIDVVLIDTAGRMQDNEPLMRALAKLVKVNQPD 538
+LFE GYG +IA +AI ++RD + D+VL+DTAGR ++ LM L +PD
Sbjct: 476 ELFEAGYGGSDLVTKIAKQAIKYSRDQNFDIVLMDTAGRRHNDPTLMSPLKSFADQAKPD 535
Query: 539 LLLFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTIDDKVGAAISMTY 598
++ VGEALVG ++V Q FN+A N +D +++K DT+ + +G ++M Y
Sbjct: 536 KIIMVGEALVGTDSVQQAKNFNDAFGK---GRN---LDFFIISKCDTVGEMLGTMVNMVY 589
Query: 599 ITGQPIVFVGTGQTYTDLKSLNAKAVVNALM 629
TG PI+FVG GQTYTDL++L+ K VN LM
Sbjct: 590 ATGIPILFVGVGQTYTDLRTLSVKWAVNTLM 620
>CGD|CAL0003010 [details] [associations]
symbol:orf19.3952 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0005789 "endoplasmic reticulum membrane" evidence=IEA]
[GO:0045047 "protein targeting to ER" evidence=IEA] [GO:0005525
"GTP binding" evidence=IEA] [GO:0005047 "signal recognition
particle binding" evidence=IEA] InterPro:IPR000897
InterPro:IPR003593 InterPro:IPR007222 InterPro:IPR013822
Pfam:PF00448 Pfam:PF02881 Pfam:PF04086 PROSITE:PS00300
SMART:SM00382 SMART:SM00962 CGD:CAL0003010 GO:GO:0005525
GO:GO:0003924 EMBL:AACQ01000012 eggNOG:COG0552 GO:GO:0006614
SUPFAM:SSF47364 KO:K13431 GO:GO:0005785 GO:GO:0005047
RefSeq:XP_721861.1 ProteinModelPortal:Q5AK68 STRING:Q5AK68
GeneID:3636513 KEGG:cal:CaO19.3952 Uniprot:Q5AK68
Length = 535
Score = 611 (220.1 bits), Expect = 1.3e-59, P = 1.3e-59
Identities = 132/300 (44%), Positives = 179/300 (59%)
Query: 334 ILEKMKDHLIAKNVAADIAVKLCDSVALKLEGKVLGTFESVANTVKSTLTDALVQILSPK 393
+ +K ++ LI KN+ IA + D + KL T K LTD L +IL+P
Sbjct: 247 VSKKFREQLITKNITPGIATTIIDKIKTKLSANKKVTMA----VYKQALTDELTKILTPN 302
Query: 394 RRVDILRDALE-AKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRA 452
D+L D A+ RP+V++ GVNGVGKSTNLAK+ FW ++NNLNVLI ACDTFR+
Sbjct: 303 VSTDLLHDIKRNAELNTRPYVISVVGVNGVGKSTNLAKLAFWFLQNNLNVLICACDTFRS 362
Query: 453 GAVEQLRTHVRHLCSLHPAAKHGGREMVQLFEKGYGKDP--AEIAFRAISHARDMHIDVV 510
GAVEQL+ HV +L L+ A+ + + + +FEKGYG + A +A+ +A + D+V
Sbjct: 363 GAVEQLKVHVNNLNRLNEASTNT-KSRIDIFEKGYGSGDHVVQTAKQAVQYAEENKFDIV 421
Query: 511 LIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQLVKFNNAMADHSLSD 570
LIDTAGR N LM L K P+ ++ VGEALVG ++V+Q FN A
Sbjct: 422 LIDTAGRTHSNAKLMAPLKKFGDAANPNKIIMVGEALVGTDSVEQATNFNKAFG------ 475
Query: 571 NPHLIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGTGQTYTDLKSLNAKAVVNALMK 630
N +D +++K DT+ D VG I+M T PI+FVGTGQTYTD+K L+ K VV LMK
Sbjct: 476 NKRTLDFFIISKVDTVGDLVGTMINMVMATNVPILFVGTGQTYTDIKRLSVKQVVEMLMK 535
>TIGR_CMR|CJE_0809 [details] [associations]
symbol:CJE_0809 "signal recognition particle protein"
species:195099 "Campylobacter jejuni RM1221" [GO:0003924 "GTPase
activity" evidence=ISS] [GO:0005048 "signal sequence binding"
evidence=ISS] [GO:0009306 "protein secretion" evidence=ISS]
[GO:0048501 "signal recognition particle, plasma membrane
targeting" evidence=ISS] InterPro:IPR000897 InterPro:IPR003593
InterPro:IPR004125 InterPro:IPR004780 InterPro:IPR013822
Pfam:PF00448 Pfam:PF02881 Pfam:PF02978 PROSITE:PS00300
SMART:SM00382 SMART:SM00962 SMART:SM00963 GO:GO:0005525
GO:GO:0003924 GO:GO:0006184 EMBL:CP000025 GenomeReviews:CP000025_GR
GO:GO:0008312 GO:GO:0006614 SUPFAM:SSF47364 eggNOG:COG0541
KO:K03106 Gene3D:1.10.260.30 SUPFAM:SSF47446 HOGENOM:HOG000036164
OMA:DSGKTEQ PANTHER:PTHR11564:SF7 TIGRFAMs:TIGR00959
ProtClustDB:PRK10867 GO:GO:0048500 RefSeq:YP_178813.1
ProteinModelPortal:Q5HV72 STRING:Q5HV72 GeneID:3230759
KEGG:cjr:CJE0809 PATRIC:20043363 BioCyc:CJEJ195099:GJC0-824-MONOMER
Uniprot:Q5HV72
Length = 445
Score = 279 (103.3 bits), Expect = 7.7e-22, P = 7.7e-22
Identities = 75/219 (34%), Positives = 111/219 (50%)
Query: 411 PFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHP 470
P V+ G+ G GK+T+ K+ +L N VL+AACD R AVEQLR LC +
Sbjct: 95 PTVVLMAGLQGGGKTTSTIKLANYLKLRNKKVLVAACDLQRLAAVEQLR----QLCEANE 150
Query: 471 AAKHGGREMVQLFEKGYGKDPAEIAFRAISHARDMHIDVVLIDTAGRMQDNEPLMRALAK 530
++LF KDP +A A+ A +DV+L+DTAGR+ +E LM L
Sbjct: 151 ---------IELFFIENEKDPIRVAKEALKKAESSMVDVLLVDTAGRLAIDEALMNELKA 201
Query: 531 LVKVNQPDLLLFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTIDDKV 590
+ V PD + +V +A+ G + V FN A+ N I G++L+KFD D K
Sbjct: 202 VKDVLNPDEIFYVADAMSGQDGVKTAASFNEAL-------N---ISGVILSKFDA-DTKG 250
Query: 591 GAAISMTYITGQPIVFVGTGQTYTDLKSLNAKAVVNALM 629
G A+ + G P+ F+G G+ DL+ +V+ +M
Sbjct: 251 GVALGIAKQIGIPLRFIGVGEKVADLEVFIPDRIVSRIM 289
>UNIPROTKB|P66844 [details] [associations]
symbol:ffh "Signal recognition particle protein"
species:1773 "Mycobacterium tuberculosis" [GO:0005618 "cell wall"
evidence=IDA] [GO:0005886 "plasma membrane" evidence=IDA]
[GO:0040007 "growth" evidence=IMP] HAMAP:MF_00306
InterPro:IPR000897 InterPro:IPR003593 InterPro:IPR004125
InterPro:IPR004780 InterPro:IPR013822 InterPro:IPR022941
Pfam:PF00448 Pfam:PF02881 Pfam:PF02978 PROSITE:PS00300
SMART:SM00382 SMART:SM00962 SMART:SM00963 GO:GO:0005525
GO:GO:0005886 GO:GO:0040007 GO:GO:0005618 EMBL:AE000516
GenomeReviews:AE000516_GR GenomeReviews:AL123456_GR GO:GO:0003924
GO:GO:0006184 EMBL:BX842581 GO:GO:0008312 GO:GO:0006614
SUPFAM:SSF47364 TCDB:3.A.5.2.2 GO:GO:0005786 eggNOG:COG0541
KO:K03106 Gene3D:1.10.260.30 SUPFAM:SSF47446 HOGENOM:HOG000036164
PANTHER:PTHR11564:SF7 TIGRFAMs:TIGR00959 OMA:GQQVVKI
ProtClustDB:PRK10867 PIR:D70747 RefSeq:NP_217432.1
RefSeq:NP_337496.1 RefSeq:YP_006516369.1 ProteinModelPortal:P66844
SMR:P66844 PRIDE:P66844 EnsemblBacteria:EBMYCT00000003158
EnsemblBacteria:EBMYCT00000069261 GeneID:13317709 GeneID:888242
GeneID:925291 KEGG:mtc:MT2984 KEGG:mtu:Rv2916c KEGG:mtv:RVBD_2916c
PATRIC:18128328 TubercuList:Rv2916c Uniprot:P66844
Length = 525
Score = 277 (102.6 bits), Expect = 2.9e-21, P = 2.9e-21
Identities = 88/298 (29%), Positives = 136/298 (45%)
Query: 318 RGLVGSKNLTKSDMKPILEKMKDHLIAKNVAADIAVKLCDSVALKLEGKVLGTFESVANT 377
+GL G LT +D+ +++ L+ +V+ + + + G + + + A
Sbjct: 14 QGLRGKGRLTDADIDATTREIRLALLEADVSLPVVRAFIHRIKERARGAEVSSALNPAQQ 73
Query: 378 VKSTLTDALVQILSPKRRVDILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIE 437
V + + L+ IL + R + AK P V+ G+ G GK+T K+ L
Sbjct: 74 VVKIVNEELISILGGETR-----ELAFAKTP--PTVVMLAGLQGSGKTTLAGKLAARLRG 126
Query: 438 NNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHPAAKHGGREMVQLFEKGYGKDPAEIAFR 497
L+ ACD R AV QL+ V + A H G E G G DP +A
Sbjct: 127 QGHTPLLVACDLQRPAAVNQLQV-VGERAGVPVFAPHPGASP----ESGPG-DPVAVAAA 180
Query: 498 AISHARDMHIDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQLV 557
++ AR H DVV++DTAGR+ +E LM A + PD +LFV +A++G +AV
Sbjct: 181 GLAEARAKHFDVVIVDTAGRLGIDEELMAQAAAIRDAINPDEVLFVLDAMIGQDAVTTAA 240
Query: 558 KFNNAMADHSLSDNPHLIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGTGQTYTD 615
F + G+ LTK D D + GAA+S+ +TG PI+F TG+ D
Sbjct: 241 AFGEGVG----------FTGVALTKLDG-DARGGAALSVREVTGVPILFASTGEKLED 287
>TIGR_CMR|BA_3985 [details] [associations]
symbol:BA_3985 "signal recognition particle-docking protein
FtsY" species:198094 "Bacillus anthracis str. Ames" [GO:0003924
"GTPase activity" evidence=ISS] [GO:0005047 "signal recognition
particle binding" evidence=ISS] [GO:0009306 "protein secretion"
evidence=ISS] HAMAP:MF_00920 InterPro:IPR000897 InterPro:IPR003593
InterPro:IPR004390 InterPro:IPR013822 Pfam:PF00448 Pfam:PF02881
PROSITE:PS00300 SMART:SM00382 SMART:SM00962 SMART:SM00963
GO:GO:0005525 GO:GO:0005737 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003924 GO:GO:0031226 KO:K03110
ProtClustDB:PRK10416 GO:GO:0006614 SUPFAM:SSF47364
TIGRFAMs:TIGR00064 HSSP:P83749 HOGENOM:HOG000036277
RefSeq:NP_846227.1 RefSeq:YP_020624.1 RefSeq:YP_029949.1
ProteinModelPortal:Q81WJ0 SMR:Q81WJ0 DNASU:1086789
EnsemblBacteria:EBBACT00000008913 EnsemblBacteria:EBBACT00000016260
EnsemblBacteria:EBBACT00000019469 GeneID:1086789 GeneID:2817443
GeneID:2848220 KEGG:ban:BA_3985 KEGG:bar:GBAA_3985 KEGG:bat:BAS3698
OMA:LVYRYRK BioCyc:BANT260799:GJAJ-3756-MONOMER
BioCyc:BANT261594:GJ7F-3873-MONOMER Uniprot:Q81WJ0
Length = 329
Score = 257 (95.5 bits), Expect = 2.9e-21, P = 2.9e-21
Identities = 78/229 (34%), Positives = 115/229 (50%)
Query: 406 KKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHL 465
+K G V+ F GVNGVGK+T + K+ +VL+AA DTFRAGA+EQL
Sbjct: 116 QKDGLTVVL-FVGVNGVGKTTTIGKMAHKFKSEGKSVLLAAGDTFRAGAIEQLEVW---- 170
Query: 466 CSLHPAAKHGGREMVQLFEKGYGKDPAEIAFRAISHARDMHIDVVLIDTAGRMQDNEPLM 525
G R V++ ++G G DPA + + A+ A+ ++DV+L DTAGR+Q+ LM
Sbjct: 171 ---------GDRVGVEVIKQGSGSDPAAVMYDAVQAAKARNVDVLLCDTAGRLQNKVNLM 221
Query: 526 RALAKLVKVNQ------PDLLLFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIV 579
+ L K+ +V + P +L V +A G + Q F A N + GIV
Sbjct: 222 KELEKVKRVIEREVPGAPHEVLLVIDATTGQNGLSQAKTFREAT-------N---VTGIV 271
Query: 580 LTKFDTIDDKVGAAISMTYITGQPIVFVGTGQTYTDLKSLNAKAVVNAL 628
LTK D K G +++ P+ FVG G+ DL+ + + V L
Sbjct: 272 LTKLDGTA-KGGIVLAIRNEMDVPVKFVGLGEQMDDLQQFDPEQYVYGL 319
>UNIPROTKB|Q97QD2 [details] [associations]
symbol:ffh "Signal recognition particle protein"
species:170187 "Streptococcus pneumoniae TIGR4" [GO:0005515
"protein binding" evidence=IPI] HAMAP:MF_00306 InterPro:IPR000897
InterPro:IPR003593 InterPro:IPR004125 InterPro:IPR004780
InterPro:IPR013822 InterPro:IPR022941 Pfam:PF00448 Pfam:PF02881
Pfam:PF02978 PROSITE:PS00300 SMART:SM00382 SMART:SM00962
SMART:SM00963 GO:GO:0005525 GO:GO:0003924 GO:GO:0006184
EMBL:AE005672 GenomeReviews:AE005672_GR GO:GO:0008312 GO:GO:0006614
SUPFAM:SSF47364 GO:GO:0005786 KO:K03106 Gene3D:1.10.260.30
SUPFAM:SSF47446 HOGENOM:HOG000036164 PANTHER:PTHR11564:SF7
TIGRFAMs:TIGR00959 OMA:GQQVVKI ProtClustDB:PRK10867 HSSP:O07347
PIR:F95149 RefSeq:NP_345751.1 ProteinModelPortal:Q97QD2
EnsemblBacteria:EBSTRT00000025249 GeneID:931801 KEGG:spn:SP_1287
PATRIC:19706973 Uniprot:Q97QD2
Length = 523
Score = 274 (101.5 bits), Expect = 6.2e-21, P = 6.2e-21
Identities = 89/303 (29%), Positives = 150/303 (49%)
Query: 324 KNLTKSDM---KPILEKMKDHLIAKNVAADIAVKLCDSVALKLEGKVLGTFESVANTVKS 380
KNL K + E K+ +A + AD+A+ + K+ + +G V +T+
Sbjct: 15 KNLRKKGKISESDVQEATKEIRLAL-LEADVALPVVKDFIKKVRERAVG--HEVIDTLNP 71
Query: 381 TLTDALVQILSPKRRVDILRDALEAKKQGR-PFVMAFCGVNGVGKSTNLAKICFWLI-EN 438
+++I+ + + D E K + P ++ G+ G GK+T K+ L E
Sbjct: 72 A--QQIIKIVDEELTAVLGSDTAEIIKSPKIPTIIMMVGLQGAGKTTFAGKLANKLKKEE 129
Query: 439 NLNVLIAACDTFRAGAVEQLRTHVRHLCSLHPAAKHGGREM-VQLFEKGYGKDPAEIAFR 497
N L+ A D +R A++QL+T G+++ V +F G EI +
Sbjct: 130 NARPLMIAADIYRPAAIDQLKTL--------------GQQIDVPVFALGTEVPAVEIVRQ 175
Query: 498 AISHARDMHIDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQLV 557
+ A+ H D VLIDTAGR+Q +E LM L + + QP+ +L V +A++G EA +
Sbjct: 176 GLEQAQTNHNDYVLIDTAGRLQIDELLMNELRDVKALAQPNEILLVVDAMIGQEAANVAR 235
Query: 558 KFNNAMADHSLSDNPHLIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGTGQTYTDLK 617
+FN + + G++LTK D D + GAA+S+ +ITG+PI F GTG+ TD++
Sbjct: 236 EFNAQLE----------VTGVILTKIDG-DTRGGAALSVRHITGKPIKFTGTGEKITDIE 284
Query: 618 SLN 620
+ +
Sbjct: 285 TFH 287
>TIGR_CMR|CBU_0450 [details] [associations]
symbol:CBU_0450 "signal recognition particle protein"
species:227377 "Coxiella burnetii RSA 493" [GO:0003924 "GTPase
activity" evidence=ISS] [GO:0005048 "signal sequence binding"
evidence=ISS] [GO:0009306 "protein secretion" evidence=ISS]
[GO:0048501 "signal recognition particle, plasma membrane
targeting" evidence=ISS] HAMAP:MF_00306 InterPro:IPR000897
InterPro:IPR003593 InterPro:IPR004125 InterPro:IPR004780
InterPro:IPR013822 InterPro:IPR022941 Pfam:PF00448 Pfam:PF02881
Pfam:PF02978 PROSITE:PS00300 SMART:SM00382 SMART:SM00962
SMART:SM00963 GO:GO:0005525 GO:GO:0003924 GO:GO:0006184
EMBL:AE016828 GenomeReviews:AE016828_GR GO:GO:0008312 GO:GO:0006614
SUPFAM:SSF47364 GO:GO:0005786 KO:K03106 Gene3D:1.10.260.30
SUPFAM:SSF47446 HOGENOM:HOG000036164 PANTHER:PTHR11564:SF7
TIGRFAMs:TIGR00959 OMA:GQQVVKI ProtClustDB:PRK10867 HSSP:O07347
RefSeq:NP_819486.1 ProteinModelPortal:Q83E79 PRIDE:Q83E79
GeneID:1208334 KEGG:cbu:CBU_0450 PATRIC:17929591
BioCyc:CBUR227377:GJ7S-448-MONOMER Uniprot:Q83E79
Length = 461
Score = 264 (98.0 bits), Expect = 5.2e-20, P = 5.2e-20
Identities = 79/286 (27%), Positives = 141/286 (49%)
Query: 347 VAADIAVKLCDSVALKLEGKVLGTFESVANTVKSTLTDALVQILSPKRRVDILRDAL-EA 405
+ AD+A+ + + K LG + V V+ +ALV+++ + +L D L E
Sbjct: 39 IEADVALPVVKDFIEHVREKALG--QEVIGNVRPG--EALVKVVQDEL-THLLGDELVEI 93
Query: 406 KKQGRP-FVMAFCGVNGVGKSTNLAKICFWLIE-NNLNVLIAACDTFRAGAVEQLRTHVR 463
+P V+ G+ G GK+T +AK+ WL+E +V++A+ D +R A++QL T
Sbjct: 94 NLNAQPPIVIVMAGLQGSGKTTTVAKLARWLLEIQKKSVMVASADVYRPAAIQQLETLAS 153
Query: 464 HLCSLHPAAKHGGREMVQLFEKGYGKDPAEIAFRAISHARDMHIDVVLIDTAGRMQDNEP 523
+ ++ F + P EIA A+ A +DV+++DTAGR+ +
Sbjct: 154 QINAI-------------FFPTQADQKPVEIAKAALKQAEKQFMDVLILDTAGRLHIDNV 200
Query: 524 LMRALAKLVKVNQPDLLLFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKF 583
LM + + P +L V ++++G +A + FN+ + P + G++LTK
Sbjct: 201 LMEEMKAISDAVTPTEILLVVDSMMGQDAANVAKSFNDTL--------P--LTGVILTKL 250
Query: 584 DTIDDKVGAAISMTYITGQPIVFVGTGQTYTDLKSLNAKAVVNALM 629
D D + GAA+SM IT +PI FVG G+ L+ + + + ++
Sbjct: 251 DG-DTRGGAALSMRMITQKPIKFVGVGEKIDALEPFHPNRMASRIL 295
>TIGR_CMR|CPS_4073 [details] [associations]
symbol:CPS_4073 "signal recognition particle protein"
species:167879 "Colwellia psychrerythraea 34H" [GO:0003924 "GTPase
activity" evidence=ISS] [GO:0005786 "signal recognition particle,
endoplasmic reticulum targeting" evidence=ISS] [GO:0006617
"SRP-dependent cotranslational protein targeting to membrane,
signal sequence recognition" evidence=ISS] HAMAP:MF_00306
InterPro:IPR000897 InterPro:IPR003593 InterPro:IPR004125
InterPro:IPR004780 InterPro:IPR013822 InterPro:IPR022941
Pfam:PF00448 Pfam:PF02881 Pfam:PF02978 PROSITE:PS00300
SMART:SM00382 SMART:SM00962 SMART:SM00963 GO:GO:0005525
GO:GO:0003924 GO:GO:0006184 EMBL:CP000083 GenomeReviews:CP000083_GR
GO:GO:0008312 GO:GO:0006614 SUPFAM:SSF47364 GO:GO:0005786
eggNOG:COG0541 KO:K03106 Gene3D:1.10.260.30 SUPFAM:SSF47446
HOGENOM:HOG000036164 PANTHER:PTHR11564:SF7 TIGRFAMs:TIGR00959
OMA:GQQVVKI ProtClustDB:PRK10867 RefSeq:YP_270728.1
ProteinModelPortal:Q47WU4 SMR:Q47WU4 STRING:Q47WU4 GeneID:3519232
KEGG:cps:CPS_4073 PATRIC:21471017
BioCyc:CPSY167879:GI48-4086-MONOMER Uniprot:Q47WU4
Length = 463
Score = 263 (97.6 bits), Expect = 6.8e-20, P = 6.8e-20
Identities = 82/297 (27%), Positives = 147/297 (49%)
Query: 334 ILEKMKDHLIAKNVAADIAVKLCDSVALKLEGKVLGTFESVANTVKSTLTDALVQILSPK 393
I E +++ +A + AD+A+ + K++ K +GT S + T + + L +
Sbjct: 27 IKETLREVRMAL-LEADVALPVIREFIAKVKEKAVGTDVSKSLTPGQIFVKIVQKEL--E 83
Query: 394 RRVDILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLN-VLIAACDTFRA 452
+ + + L+ + P V+ G+ G GK+T++AK+ +L E VL+ + D +R
Sbjct: 84 SAMGEVNEGLDLRA-APPAVVLMAGLQGAGKTTSVAKLAKFLTEREKKKVLVVSADVYRP 142
Query: 453 GAVEQLRTHVRHLCSLHPAAKHGGREMVQLFEKGYGKDPAEIAFRAISHARDMHIDVVLI 512
A++QL T + V F + P +IA AI HA+ DV+++
Sbjct: 143 AAIKQLETLAEEIS-------------VGFFPSDIKQKPIDIANAAIDHAKKNFYDVLIV 189
Query: 513 DTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQLVKFNNAMADHSLSDNP 572
DTAGR+ +E +M + +L P LF +A+ G +A + FN+A+ P
Sbjct: 190 DTAGRLHIDENMMAEIQQLHAAINPIETLFTVDAMTGQDAANTAKAFNDAL--------P 241
Query: 573 HLIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGTGQTYTDLKSLNAKAVVNALM 629
+ GI+LTK D D + GAA+S+ +ITG+PI F+G G+ L+ + + + ++
Sbjct: 242 --LTGIILTKTDG-DARGGAALSIRHITGKPIKFMGVGEKIEALEPFHPDRIASRIL 295
>TIGR_CMR|GSU_0642 [details] [associations]
symbol:GSU_0642 "signal recognition particle protein"
species:243231 "Geobacter sulfurreducens PCA" [GO:0003924 "GTPase
activity" evidence=ISS] [GO:0005048 "signal sequence binding"
evidence=ISS] [GO:0009306 "protein secretion" evidence=ISS]
[GO:0048501 "signal recognition particle, plasma membrane
targeting" evidence=ISS] HAMAP:MF_00306 InterPro:IPR000897
InterPro:IPR003593 InterPro:IPR004125 InterPro:IPR004780
InterPro:IPR013822 InterPro:IPR022941 Pfam:PF00448 Pfam:PF02881
Pfam:PF02978 PROSITE:PS00300 SMART:SM00382 SMART:SM00962
SMART:SM00963 GO:GO:0005525 GO:GO:0003924 GO:GO:0006184
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0008312 GO:GO:0006614
SUPFAM:SSF47364 GO:GO:0005786 KO:K03106 Gene3D:1.10.260.30
SUPFAM:SSF47446 HOGENOM:HOG000036164 PANTHER:PTHR11564:SF7
TIGRFAMs:TIGR00959 OMA:GQQVVKI ProtClustDB:PRK10867
RefSeq:NP_951699.1 ProteinModelPortal:Q74FG7 GeneID:2685362
KEGG:gsu:GSU0642 PATRIC:22024031 BioCyc:GSUL243231:GH27-644-MONOMER
Uniprot:Q74FG7
Length = 452
Score = 262 (97.3 bits), Expect = 7.9e-20, P = 7.9e-20
Identities = 75/225 (33%), Positives = 117/225 (52%)
Query: 405 AKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRH 464
A K P +M G+ G GK+T+ K+ L L+ D +R A+EQL+T R
Sbjct: 97 AAKPPVPIMMV--GLQGAGKTTSCGKLARLLKGQRRRPLLVPADVYRPAAIEQLKTLGRQ 154
Query: 465 LCSLHPAAKHGGREMVQLFEKGYGKDPAEIAFRAISHARDMHIDVVLIDTAGRMQDNEPL 524
L V++F+ +DP +I A+ +A DVV++DTAGR Q +E L
Sbjct: 155 LS-------------VEVFDSRADQDPVDICREALRYATLNGFDVVILDTAGRHQIDEYL 201
Query: 525 MRALAKLVKVNQPDLLLFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFD 584
M L ++ + +P +LFV +A+ G EAV+ FN+ + D I G+VLTK D
Sbjct: 202 MNELVRIKEAAEPREILFVADAMTGQEAVNVASGFNDRL-D---------ITGVVLTKLD 251
Query: 585 TIDDKVGAAISMTYITGQPIVFVGTGQTYTDLKSLNAKAVVNALM 629
D K GAA+S+ +TG+P+ VG G+ L+ +A +V+ ++
Sbjct: 252 G-DAKGGAALSIRAVTGKPVKLVGVGEKLDALEVFHADRLVSRIL 295
>TIGR_CMR|SO_1356 [details] [associations]
symbol:SO_1356 "signal recognition particle protein Ffh"
species:211586 "Shewanella oneidensis MR-1" [GO:0003924 "GTPase
activity" evidence=ISS] [GO:0005048 "signal sequence binding"
evidence=ISS] [GO:0009306 "protein secretion" evidence=ISS]
[GO:0048501 "signal recognition particle, plasma membrane
targeting" evidence=ISS] HAMAP:MF_00306 InterPro:IPR000897
InterPro:IPR003593 InterPro:IPR004125 InterPro:IPR004780
InterPro:IPR013822 InterPro:IPR022941 Pfam:PF00448 Pfam:PF02881
Pfam:PF02978 PROSITE:PS00300 SMART:SM00382 SMART:SM00962
SMART:SM00963 GO:GO:0005525 GO:GO:0003924 GO:GO:0006184
EMBL:AE014299 GenomeReviews:AE014299_GR InterPro:IPR001251
PROSITE:PS50191 GO:GO:0008312 GO:GO:0006614 SUPFAM:SSF47364
GO:GO:0005786 KO:K03106 Gene3D:1.10.260.30 SUPFAM:SSF47446
HOGENOM:HOG000036164 PANTHER:PTHR11564:SF7 TIGRFAMs:TIGR00959
OMA:GQQVVKI ProtClustDB:PRK10867 HSSP:O07347 RefSeq:NP_716976.1
ProteinModelPortal:Q8EH73 GeneID:1169177 KEGG:son:SO_1356
PATRIC:23522366 Uniprot:Q8EH73
Length = 457
Score = 259 (96.2 bits), Expect = 1.8e-19, P = 1.8e-19
Identities = 84/300 (28%), Positives = 151/300 (50%)
Query: 336 EKMKDHLIAKNVA---ADIAVKLCDSVALKLEGKVLGTFESVANTVKSTLTDALVQILSP 392
E +K+ L +A AD+A+ + ++ + +G + VA ++ A ++I+
Sbjct: 25 ENVKETLREVRMALLEADVALPVVREFVNNVKERAVG--QEVAKSLSPG--QAFIKIVQS 80
Query: 393 K--RRVDILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWL-IENNLNVLIAACDT 449
+ + + AL+ Q P V+ G+ G GK+T++AK+ L + +VL+ + D
Sbjct: 81 ELEKSMGEANQALDLATQP-PAVVMMAGLQGAGKTTSVAKLGKLLRTRHKKSVLVVSADV 139
Query: 450 FRAGAVEQLRTHVRHLCSLHPAAKHGGREMVQLFEKGYGKDPAEIAFRAISHARDMHIDV 509
+R A++QL T + V+ F + P +IA AI+HA+ IDV
Sbjct: 140 YRPAAIKQLETLATEVD-------------VEFFPSDVSQKPIDIAKAAIAHAKLKFIDV 186
Query: 510 VLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQLVKFNNAMADHSLS 569
V++DTAGR+ +E +M + L +P LFV +A+ G +A + FN A+
Sbjct: 187 VILDTAGRLHVDEAMMDEIKALHAALKPIETLFVVDAMTGQDAANTAKAFNEAL------ 240
Query: 570 DNPHLIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGTGQTYTDLKSLNAKAVVNALM 629
P + G++LTK D D + GAA+S+ +ITG+PI F+G G+ L+ + + + ++
Sbjct: 241 --P--LTGVILTKVDG-DARGGAALSIRHITGKPIKFLGVGEKTDALEPFHPDRIASRIL 295
>TIGR_CMR|VC_0560 [details] [associations]
symbol:VC_0560 "signal recognition particle protein"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0003924 "GTPase
activity" evidence=ISS] [GO:0005048 "signal sequence binding"
evidence=ISS] [GO:0009306 "protein secretion" evidence=ISS]
[GO:0048501 "signal recognition particle, plasma membrane
targeting" evidence=ISS] HAMAP:MF_00306 InterPro:IPR000897
InterPro:IPR003593 InterPro:IPR004125 InterPro:IPR004780
InterPro:IPR013822 InterPro:IPR022941 Pfam:PF00448 Pfam:PF02881
Pfam:PF02978 PROSITE:PS00300 SMART:SM00382 SMART:SM00962
SMART:SM00963 GO:GO:0005525 EMBL:AE003852 GenomeReviews:AE003852_GR
GO:GO:0003924 GO:GO:0006184 GO:GO:0008312 GO:GO:0006614
SUPFAM:SSF47364 GO:GO:0005786 KO:K03106 Gene3D:1.10.260.30
SUPFAM:SSF47446 PANTHER:PTHR11564:SF7 TIGRFAMs:TIGR00959
OMA:GQQVVKI ProtClustDB:PRK10867 PIR:H82306 RefSeq:NP_230211.1
HSSP:P07019 ProteinModelPortal:Q9KUG1 SMR:Q9KUG1 DNASU:2615237
GeneID:2615237 KEGG:vch:VC0560 PATRIC:20080238 Uniprot:Q9KUG1
Length = 461
Score = 253 (94.1 bits), Expect = 4.9e-19, Sum P(2) = 4.9e-19
Identities = 73/230 (31%), Positives = 117/230 (50%)
Query: 401 DALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLN-VLIAACDTFRAGAVEQLR 459
+AL Q P V+ G+ G GK+T++ K+ L E + VL+ + D +R A++QL
Sbjct: 91 EALNLAAQP-PAVILMAGLQGAGKTTSVGKLSKLLKERDKKKVLVVSADVYRPAAIKQLE 149
Query: 460 THVRHLCSLHPAAKHGGREMVQLFEKGYGKDPAEIAFRAISHARDMHIDVVLIDTAGRMQ 519
T L G V F + P +IA AI HA+ DV+++DTAGR+
Sbjct: 150 TLANDL----------G---VDFFPSTPDQKPIDIANAAIDHAKKKFYDVLIVDTAGRLA 196
Query: 520 DNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIV 579
+E +M + L K P LFV +A+ G +A D F +A+ P + G++
Sbjct: 197 IDEQMMAEIQALHKAINPVETLFVVDAMTGQDAADTAKAFGDAL--------P--LTGVI 246
Query: 580 LTKFDTIDDKVGAAISMTYITGQPIVFVGTGQTYTDLKSLNAKAVVNALM 629
LTK D D + GAA+S+ +ITG+PI F+G G+ L+ + + + ++
Sbjct: 247 LTKVDG-DARGGAALSVRHITGKPIKFIGVGEKTDALEPFHPDRIASRIL 295
Score = 44 (20.5 bits), Expect = 4.9e-19, Sum P(2) = 4.9e-19
Identities = 12/55 (21%), Positives = 26/55 (47%)
Query: 355 LCDSVALKLEGKVLGTFESVANTVKSTLTDALVQILSPKRRVDILRDALEAKKQG 409
L D ++ L+ + G + +K TL + + +L + ++RD + K+G
Sbjct: 5 LTDRLSKTLKN-ISGKGRLTEDNIKDTLREVRMALLEADVALPVVRDFVNRVKEG 58
>TIGR_CMR|SPO_1339 [details] [associations]
symbol:SPO_1339 "signal recognition particle-docking
protein FtsY" species:246200 "Ruegeria pomeroyi DSS-3" [GO:0003924
"GTPase activity" evidence=ISS] [GO:0009306 "protein secretion"
evidence=ISS] [GO:0048501 "signal recognition particle, plasma
membrane targeting" evidence=ISS] HAMAP:MF_00920 InterPro:IPR000897
InterPro:IPR003593 InterPro:IPR004390 InterPro:IPR013822
Pfam:PF00448 Pfam:PF02881 SMART:SM00382 SMART:SM00962 SMART:SM00963
GO:GO:0005525 GO:GO:0005737 EMBL:CP000031 GenomeReviews:CP000031_GR
GO:GO:0003924 GO:GO:0031226 HOGENOM:HOG000036278 KO:K03110
GO:GO:0006614 SUPFAM:SSF47364 TIGRFAMs:TIGR00064 OMA:ADMGVET
RefSeq:YP_166581.1 ProteinModelPortal:Q5LTS4 SMR:Q5LTS4
GeneID:3192959 KEGG:sil:SPO1339 PATRIC:23375989 Uniprot:Q5LTS4
Length = 390
Score = 251 (93.4 bits), Expect = 6.3e-19, P = 6.3e-19
Identities = 79/225 (35%), Positives = 110/225 (48%)
Query: 410 RPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLH 469
RP V+ GVNG GK+T + K+ V+IAA DTFRA AVEQL+
Sbjct: 184 RPQVVLVVGVNGSGKTTTIGKLASQFKAAGKKVVIAAGDTFRAAAVEQLQVW-------- 235
Query: 470 PAAKHGGREMVQLFEKGYGKDPAEIAFRAISHARDMHIDVVLIDTAGRMQDNEPLMRALA 529
G R V + G DPA +AF A++ A++ D++LIDTAGR+Q+ LM LA
Sbjct: 236 -----GDRAGVPVLTAPEGSDPASLAFDAMTRAQEDGADLLLIDTAGRLQNRADLMEELA 290
Query: 530 KLVKV------NQPDLLLFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKF 583
K+V+V P L V +A G A+ Q+ F +AD + G+V+TK
Sbjct: 291 KIVRVIRKKDDTAPHNTLLVLDATTGQNAISQVETFQK-LAD---------VSGLVMTKL 340
Query: 584 DTIDDKVGAAISMTYITGQPIVFVGTGQTYTDLKSLNAKAVVNAL 628
D K G +S+ G PI +G G+ DL + + AL
Sbjct: 341 DGTA-KGGILVSLADRFGLPIHAIGVGEQIDDLAPFDPEDFAAAL 384
Score = 141 (54.7 bits), Expect = 1.9e-06, P = 1.9e-06
Identities = 44/126 (34%), Positives = 68/126 (53%)
Query: 334 ILEKMKDHLIAKNVAADIAVKLCDSVALKLEGKVLGTFESVANTVKSTLTDALVQILSPK 393
+LE++++ LIA ++ D A+++ ++A G+ L T E +K+ L + +I+ P
Sbjct: 120 MLEQLEELLIAADMGVDTALRVTANMAEGRIGRKLSTQE-----IKALLAQEITRIMEPV 174
Query: 394 RRVDILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAG 453
R L K RP V+ GVNG GK+T + K+ V+IAA DTFRA
Sbjct: 175 ARPM----PLYPK---RPQVVLVVGVNGSGKTTTIGKLASQFKAAGKKVVIAAGDTFRAA 227
Query: 454 AVEQLR 459
AVEQL+
Sbjct: 228 AVEQLQ 233
>TIGR_CMR|APH_1227 [details] [associations]
symbol:APH_1227 "signal recognition particle-docking
protein FtsY" species:212042 "Anaplasma phagocytophilum HZ"
[GO:0003924 "GTPase activity" evidence=ISS] [GO:0005047 "signal
recognition particle binding" evidence=ISS] [GO:0009306 "protein
secretion" evidence=ISS] InterPro:IPR000897 InterPro:IPR003593
InterPro:IPR004390 InterPro:IPR013822 Pfam:PF00448 Pfam:PF02881
SMART:SM00382 SMART:SM00962 SMART:SM00963 GO:GO:0005525
GO:GO:0006184 EMBL:CP000235 GenomeReviews:CP000235_GR GO:GO:0017111
eggNOG:COG0552 HOGENOM:HOG000036278 KO:K03110 ProtClustDB:PRK10416
GO:GO:0006614 SUPFAM:SSF47364 TIGRFAMs:TIGR00064 OMA:ADMGVET
RefSeq:YP_505757.1 ProteinModelPortal:Q2GIP4 STRING:Q2GIP4
GeneID:3931129 KEGG:aph:APH_1227 PATRIC:20951240
BioCyc:APHA212042:GHPM-1232-MONOMER Uniprot:Q2GIP4
Length = 305
Score = 235 (87.8 bits), Expect = 7.0e-19, P = 7.0e-19
Identities = 73/250 (29%), Positives = 121/250 (48%)
Query: 322 GSKNLT--KSDM-KPILEKMKDHLIAKNVAADIAVKLCDSVALKLEGKVLGTFESVANTV 378
G +N+ K+D+ + L+ ++D LI+ ++ D+A D K+ L +SVA V
Sbjct: 25 GIRNIFGGKADVDQSTLKALRDLLISTDMGPDVA----DFFTQKIS--TLKFTDSVAEEV 78
Query: 379 KSTLTDALVQILSPKRRVDILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIEN 438
+ L + L P+ + P ++ CGVNG GK+T +AK+ ++
Sbjct: 79 RLKLASEIENFLQPRSAPITITHT--------PHIILLCGVNGSGKTTTVAKLAHKFMKK 130
Query: 439 NLNVLIAACDTFRAGAVEQLRTHVRHL-CSLHPAAKHGGREMVQLFEKGYGKDPAEIAFR 497
N++V+I ACDTFRA AVEQL + C + G D A +A++
Sbjct: 131 NMSVIIGACDTFRAAAVEQLNVWAERISCPIVTGT--------------IGADAASVAYK 176
Query: 498 AISHARDMHIDVVLIDTAGRMQDNEPLMRALAKLVKV------NQPDLLLFVGEALVGNE 551
+ A DVV+IDTAGR+ +++ LM LAK+ +V P ++ V +A +G
Sbjct: 177 TVERAVKEPFDVVIIDTAGRLHNHKNLMEELAKICRVIRRHDEKAPHDIILVLDATIGQN 236
Query: 552 AVDQLVKFNN 561
Q+ F++
Sbjct: 237 TFTQVEMFSS 246
Score = 142 (55.0 bits), Expect = 3.7e-07, Sum P(2) = 3.7e-07
Identities = 45/150 (30%), Positives = 73/150 (48%)
Query: 488 GKDPAEIAFRAISHARDMHIDVVLIDTAGRMQDNEPLMRALAKLVKV------NQPDLLL 541
G D A +A++ + A DVV+IDTAGR+ +++ LM LAK+ +V P ++
Sbjct: 167 GADAASVAYKTVERAVKEPFDVVIIDTAGRLHNHKNLMEELAKICRVIRRHDEKAPHDII 226
Query: 542 FVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFD-TIDDKVGAAISMTYIT 600
V +A +G Q+ F+ S D + G++LTK D T V +S Y
Sbjct: 227 LVLDATIGQNTFTQVEMFS------SFVD----VGGLILTKLDGTAKGGVVLRVSQKY-- 274
Query: 601 GQPIVFVGTGQTYTDLKSLNAKAVVNALMK 630
I +GTG+ DL+ +A +L++
Sbjct: 275 NLMIHAIGTGEGIEDLEDFSATNFAKSLLE 304
Score = 44 (20.5 bits), Expect = 3.7e-07, Sum P(2) = 3.7e-07
Identities = 9/28 (32%), Positives = 16/28 (57%)
Query: 71 QKILQLSYVDKLLDDVHLEFRDKYKNEL 98
QKI L + D + ++V L+ + +N L
Sbjct: 63 QKISTLKFTDSVAEEVRLKLASEIENFL 90
>TIGR_CMR|NSE_0545 [details] [associations]
symbol:NSE_0545 "signal recognition particle-docking
protein FtsY" species:222891 "Neorickettsia sennetsu str. Miyayama"
[GO:0003924 "GTPase activity" evidence=ISS] [GO:0009306 "protein
secretion" evidence=ISS] InterPro:IPR000897 InterPro:IPR003593
InterPro:IPR004390 InterPro:IPR013822 Pfam:PF00448 Pfam:PF02881
SMART:SM00382 SMART:SM00962 SMART:SM00963 GO:GO:0005525
GO:GO:0006184 GO:GO:0017111 EMBL:CP000237 GenomeReviews:CP000237_GR
eggNOG:COG0552 HOGENOM:HOG000036278 KO:K03110 ProtClustDB:PRK10416
GO:GO:0006614 SUPFAM:SSF47364 TIGRFAMs:TIGR00064 RefSeq:YP_506428.1
ProteinModelPortal:Q2GDL8 STRING:Q2GDL8 GeneID:3931766
KEGG:nse:NSE_0545 PATRIC:22681139 OMA:RIISQNQ
BioCyc:NSEN222891:GHFU-564-MONOMER Uniprot:Q2GDL8
Length = 309
Score = 232 (86.7 bits), Expect = 1.5e-18, P = 1.5e-18
Identities = 74/265 (27%), Positives = 131/265 (49%)
Query: 316 LFRGLVGS--KNLTKSDMKPILEKMKDHLIAKNVAADIAVKLCDSVALKLEGKVLGTFES 373
+F+ + S ++TKS + L D++ AK ++ ++ + + + + T E
Sbjct: 1 MFKSVFSSIRNSITKS--RDYLSSGIDNIFAKEKISESTIEQLEELLISADIGPTVT-ER 57
Query: 374 VANTVKSTLT---DALVQILSPKRRVDILRDALE--AKK----QGRPFVMAFCGVNGVGK 424
+ TVK ++L Q+ S R + ++ L+ +KK Q P V+ FCGVNG GK
Sbjct: 58 IIKTVKKIKVKDGESLEQVKSITR--EEMKKVLDPTSKKLIFPQTGPQVIVFCGVNGNGK 115
Query: 425 STNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHPAAKHGGREMVQLFE 484
+T + K+ + I+ N V+IAACD FRA A+EQLR R F
Sbjct: 116 TTTIGKLAYKFIQENKTVMIAACDLFRAAAIEQLRFWAE-------------RASATFFS 162
Query: 485 KGYGKDPAEIAFRAISHARDMHIDVVLIDTAGRMQDNEPLMRALAKLVKV------NQPD 538
K+ + A++A+ A + +DV+++DT+GR+ LM L K+ +V + P+
Sbjct: 163 SETSKNASGTAYKALEKALEDKVDVLIVDTSGRLHTQNDLMEELKKICRVLSKLMPSAPN 222
Query: 539 LLLFVGEALVGNEAVDQLVKFNNAM 563
++ +A G A++Q+ F +A+
Sbjct: 223 EVILALDASTGQNALNQVQVFKDAV 247
Score = 152 (58.6 bits), Expect = 6.4e-08, P = 6.4e-08
Identities = 47/161 (29%), Positives = 81/161 (50%)
Query: 477 REMVQLFEKGYGKDPAEIAFRAISHARDMHIDVVLIDTAGRMQDNEPLMRALAKLVKV-- 534
R F K+ + A++A+ A + +DV+++DT+GR+ LM L K+ +V
Sbjct: 155 RASATFFSSETSKNASGTAYKALEKALEDKVDVLIVDTSGRLHTQNDLMEELKKICRVLS 214
Query: 535 ----NQPDLLLFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFD-TIDDK 589
+ P+ ++ +A G A++Q+ F +A+ N + G+V+TK D T
Sbjct: 215 KLMPSAPNEVILALDASTGQNALNQVQVFKDAV-------N---LTGLVVTKLDGTSKGG 264
Query: 590 VGAAISMTYITGQPIVFVGTGQTYTDLKSLNAKAVVNALMK 630
V AI+ Y I FVGTG+ TDL+ + V+AL++
Sbjct: 265 VIVAIAERY-PNLGIYFVGTGEKITDLEEFSPSEFVDALLE 304
>TIGR_CMR|APH_0349 [details] [associations]
symbol:APH_0349 "signal recognition particle protein"
species:212042 "Anaplasma phagocytophilum HZ" [GO:0003924 "GTPase
activity" evidence=ISS] [GO:0005048 "signal sequence binding"
evidence=ISS] [GO:0006617 "SRP-dependent cotranslational protein
targeting to membrane, signal sequence recognition" evidence=ISS]
[GO:0009306 "protein secretion" evidence=ISS] [GO:0048501 "signal
recognition particle, plasma membrane targeting" evidence=ISS]
InterPro:IPR000897 InterPro:IPR003593 InterPro:IPR004125
InterPro:IPR004780 InterPro:IPR013822 Pfam:PF00448 Pfam:PF02881
Pfam:PF02978 PROSITE:PS00300 SMART:SM00382 SMART:SM00962
SMART:SM00963 GO:GO:0005525 GO:GO:0003924 GO:GO:0006184
EMBL:CP000235 GenomeReviews:CP000235_GR GO:GO:0008312 GO:GO:0006614
SUPFAM:SSF47364 eggNOG:COG0541 KO:K03106 Gene3D:1.10.260.30
SUPFAM:SSF47446 HOGENOM:HOG000036164 PANTHER:PTHR11564:SF7
TIGRFAMs:TIGR00959 OMA:GQQVVKI ProtClustDB:PRK10867 GO:GO:0048500
RefSeq:YP_504956.1 ProteinModelPortal:Q2GKZ5 STRING:Q2GKZ5
GeneID:3930944 KEGG:aph:APH_0349 PATRIC:20949288
BioCyc:APHA212042:GHPM-378-MONOMER Uniprot:Q2GKZ5
Length = 449
Score = 249 (92.7 bits), Expect = 2.4e-18, P = 2.4e-18
Identities = 82/272 (30%), Positives = 138/272 (50%)
Query: 349 ADIAVKLCDSVALKLEGKVLGTFESVANTVKSTLTDALVQILSPKRRVDIL---RDALEA 405
AD+ + + D ++ K++G + VK L + +V + +++L + AL+
Sbjct: 41 ADVNLGVVDEFIENVKSKIVG-----GDVVKGVLPEQMVIKRIEECLIEVLGNEKSALDL 95
Query: 406 KKQGR-PFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRH 464
K G+ P V+ G+ GVGK+TN K+ L +++ N L+A+ D +R A EQL+
Sbjct: 96 K--GKIPAVIMMVGLQGVGKTTNTVKVALRLKKDSKNPLVASLDVYRPAAREQLKV---- 149
Query: 465 LCSLHPAAKHGGREMVQLFEKGYGKDPAEIAFRAISHARDMHIDVVLIDTAGRMQDNEPL 524
A G + + + E+ + P +IA RA+ AR DVVL+DTAGR+ N+ +
Sbjct: 150 ------LADGVGIDSLPIVEE---QKPLDIAKRAMREARLKGHDVVLLDTAGRLHINQDM 200
Query: 525 MRALAKLVKVNQPDLLLFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFD 584
+ L + K P ++ V ++L+G +AV + KFN + I G + T+ D
Sbjct: 201 IDELKCVKKEVSPAEIVLVVDSLMGQDAVTMVRKFNEELG----------ITGTIFTRAD 250
Query: 585 TIDDKVGAAISMTYITGQPIVFVGTGQTYTDL 616
D + GA +SM + G PI F+ TG+ DL
Sbjct: 251 G-DPRGGAILSMKLVAGCPIKFMSTGEKPEDL 281
>TIGR_CMR|BA_3983 [details] [associations]
symbol:BA_3983 "signal recognition particle protein"
species:198094 "Bacillus anthracis str. Ames" [GO:0003924 "GTPase
activity" evidence=ISS] [GO:0005048 "signal sequence binding"
evidence=ISS] [GO:0009306 "protein secretion" evidence=ISS]
[GO:0048501 "signal recognition particle, plasma membrane
targeting" evidence=ISS] HAMAP:MF_00306 InterPro:IPR000897
InterPro:IPR003593 InterPro:IPR004125 InterPro:IPR004780
InterPro:IPR013822 InterPro:IPR022941 Pfam:PF00448 Pfam:PF02881
Pfam:PF02978 PROSITE:PS00300 SMART:SM00382 SMART:SM00962
SMART:SM00963 GO:GO:0005525 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003924 GO:GO:0006184 GO:GO:0008312
GO:GO:0006614 SUPFAM:SSF47364 GO:GO:0005786 KO:K03106
Gene3D:1.10.260.30 SUPFAM:SSF47446 HOGENOM:HOG000036164
PANTHER:PTHR11564:SF7 TIGRFAMs:TIGR00959 OMA:GQQVVKI
ProtClustDB:PRK10867 RefSeq:NP_846225.1 RefSeq:YP_020622.1
RefSeq:YP_029947.1 HSSP:O07347 ProteinModelPortal:Q81WJ2 SMR:Q81WJ2
EnsemblBacteria:EBBACT00000009811 EnsemblBacteria:EBBACT00000016655
EnsemblBacteria:EBBACT00000023730 GeneID:1087538 GeneID:2820002
GeneID:2848277 KEGG:ban:BA_3983 KEGG:bar:GBAA_3983 KEGG:bat:BAS3696
BioCyc:BANT260799:GJAJ-3754-MONOMER
BioCyc:BANT261594:GJ7F-3871-MONOMER Uniprot:Q81WJ2
Length = 449
Score = 247 (92.0 bits), Expect = 4.0e-18, P = 4.0e-18
Identities = 70/220 (31%), Positives = 115/220 (52%)
Query: 411 PFVMAFCGVNGVGKSTNLAKICFWLIE-NNLNVLIAACDTFRAGAVEQLRTHVRHLCSLH 469
P V+ G+ G GK+T K+ L + +N ++ A D +R A++QL T + L
Sbjct: 101 PTVIMMVGLQGAGKTTTTGKLANLLRKKHNRKPMLVAADIYRPAAIKQLETLGKQL---- 156
Query: 470 PAAKHGGREMVQLFEKGYGKDPAEIAFRAISHARDMHIDVVLIDTAGRMQDNEPLMRALA 529
+M +F G P EIA +AI+ A++ H D VLIDTAG + +E LM LA
Sbjct: 157 --------DM-PVFSLGDQVSPVEIAKQAIAKAKEDHHDYVLIDTAGHLHIDEELMDELA 207
Query: 530 KLVKVNQPDLLLFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTIDDK 589
K+ +V +PD + V +A+ G +AV+ F+ + + G+VLTK D D +
Sbjct: 208 KVKEVAKPDEIFLVVDAMTGQDAVNVAQSFHEQLG----------LTGVVLTKLDG-DTR 256
Query: 590 VGAAISMTYITGQPIVFVGTGQTYTDLKSLNAKAVVNALM 629
GAA+S+ +T PI F G G+ L++ + + + + ++
Sbjct: 257 GGAALSIKAVTNTPIKFAGMGEKLDALEAFHPERMASRIL 296
>TIGR_CMR|CHY_1442 [details] [associations]
symbol:CHY_1442 "signal recognition particle-docking
protein FtsY" species:246194 "Carboxydothermus hydrogenoformans
Z-2901" [GO:0003924 "GTPase activity" evidence=ISS] [GO:0005047
"signal recognition particle binding" evidence=ISS] [GO:0009306
"protein secretion" evidence=ISS] HAMAP:MF_00920 InterPro:IPR000897
InterPro:IPR003593 InterPro:IPR004390 InterPro:IPR013822
Pfam:PF00448 Pfam:PF02881 PROSITE:PS00300 SMART:SM00382
SMART:SM00962 SMART:SM00963 GO:GO:0005525 GO:GO:0005737
EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0003924 GO:GO:0031226
eggNOG:COG0552 KO:K03110 GO:GO:0006614 SUPFAM:SSF47364
TIGRFAMs:TIGR00064 RefSeq:YP_360274.1 ProteinModelPortal:Q3AC60
SMR:Q3AC60 STRING:Q3AC60 GeneID:3728659 KEGG:chy:CHY_1442
PATRIC:21276015 HOGENOM:HOG000036277 OMA:NRIPDEL
BioCyc:CHYD246194:GJCN-1441-MONOMER Uniprot:Q3AC60
Length = 303
Score = 227 (85.0 bits), Expect = 5.1e-18, P = 5.1e-18
Identities = 81/255 (31%), Positives = 127/255 (49%)
Query: 331 MKPILEKMKDHLIAK--NVAADIAV--KLCDSVA-LKLEGKV-----LGTFESVANTVKS 380
+K L K K +++AK +V V +L + + + +EG V L E + T +
Sbjct: 7 LKESLIKTKQNIVAKIEDVFKKSTVDEELFEKLEEILIEGDVGVKPSLELVEKLRKTARE 66
Query: 381 T-LTDA--LVQILSPKRRVDILRDALEAKKQG---RPFVMAFCGVNGVGKSTNLAKICFW 434
+TD+ L Q+L K + + +A + K + P V+ GVNGVGK+T + K+ ++
Sbjct: 67 RRITDSEQLKQVL--KEEILKILEAGDNKLKNVPRTPLVILVVGVNGVGKTTTIGKLAYY 124
Query: 435 LIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHPAAKHGGREMVQLFEKGYGKDPAEI 494
+ VL+AA DTFRA A+EQL G + + ++ G DPA +
Sbjct: 125 FKQQGKQVLLAAGDTFRAAAIEQLEIW-------------GNKVGCPVIKQKEGSDPAAV 171
Query: 495 AFRAISHARDMHIDVVLIDTAGRMQDNEPLMRALAKLVKVNQ------PDLLLFVGEALV 548
AF A+ A IDV++IDTAGR+ LM L K+ +V + PD +L V +A
Sbjct: 172 AFDAVKAAIARKIDVLIIDTAGRLHTKTNLMEELRKVKRVIERELPGAPDEVLLVLDATT 231
Query: 549 GNEAVDQLVKFNNAM 563
G A+ Q+ FN A+
Sbjct: 232 GQNALSQVEYFNKAL 246
Score = 174 (66.3 bits), Expect = 1.8e-10, P = 1.8e-10
Identities = 53/147 (36%), Positives = 74/147 (50%)
Query: 488 GKDPAEIAFRAISHARDMHIDVVLIDTAGRMQDNEPLMRALAKLVKVNQ------PDLLL 541
G DPA +AF A+ A IDV++IDTAGR+ LM L K+ +V + PD +L
Sbjct: 165 GSDPAAVAFDAVKAAIARKIDVLIIDTAGRLHTKTNLMEELRKVKRVIERELPGAPDEVL 224
Query: 542 FVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTIDDKVGAAISMTYITG 601
V +A G A+ Q+ FN A+ D + G+VLTK D K G I +
Sbjct: 225 LVLDATTGQNALSQVEYFNKAL------D----LTGLVLTKLDGTA-KGGVIIGIKSSYQ 273
Query: 602 QPIVFVGTGQTYTDLKSLNAKAVVNAL 628
PI F+G G+ DL+ + + V AL
Sbjct: 274 IPIKFIGVGEKMDDLRPFDPQEFVEAL 300
>NCBI_NP|NP_355632.2 [details] [associations]
symbol:ffh "signal recognition particle protein"
species:176299 "Agrobacterium fabrum str. C58" [GO:0009306 "protein
secretion" evidence=ISS] REFSEQ:NC_003062 Ncbi:NP_355632
Length = 523
Score = 247 (92.0 bits), Expect = 6.6e-18, P = 6.6e-18
Identities = 82/284 (28%), Positives = 142/284 (50%)
Query: 349 ADIAVKLCDSVALKLEGKVLGTFESVANTVKSTLTDALVQILSPKRRVDIL-RDALEAKK 407
AD+A+++ S ++ K +G +V ++K +V+I+ + V++L + +
Sbjct: 41 ADVALEVVRSFTDRVREKAVGA--AVLKSIKPG--QMVVKIVHDEL-VEMLGTEGVSIDL 95
Query: 408 QGR-PFVMAFCGVNGVGKSTNLAKICFWLIENNLN-VLIAACDTFRAGAVEQLRTHVRHL 465
P V+ G+ G GK+T KI L + + VL+A+ DT R A EQLR
Sbjct: 96 HAAAPVVIMMVGLQGSGKTTTTGKIAKRLTDRDKKKVLMASLDTRRPAAQEQLRQ----- 150
Query: 466 CSLHPAAKHGGREMVQLFEKGYGKDPAEIAFRAISHARDMHIDVVLIDTAGRMQDNEPLM 525
G + + + G+ P +IA RA+ A+ DVV++DTAGR +EPLM
Sbjct: 151 -----LGVQTGVDTLPIIA---GQSPTDIAARAVQAAKLGGHDVVILDTAGRTHIDEPLM 202
Query: 526 RALAKLVKVNQPDLLLFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDT 585
+A + K + P +L V ++L G +AV+ F+ + I G+VLT+ D
Sbjct: 203 LEMADIKKKSNPHEILLVADSLTGQDAVNLARNFDERVG----------ITGLVLTRMDG 252
Query: 586 IDDKVGAAISMTYITGQPIVFVGTGQTYTDLKSLNAKAVVNALM 629
D + GAA+SM +TG+PI +G G+ +L + + + + ++
Sbjct: 253 -DGRGGAALSMRAVTGKPIKLIGIGERMNELDEFHPRRIADRIL 295
>TIGR_CMR|CJE_1340 [details] [associations]
symbol:CJE_1340 "signal recognition particle-docking
protein FtsY" species:195099 "Campylobacter jejuni RM1221"
[GO:0003924 "GTPase activity" evidence=ISS] [GO:0005047 "signal
recognition particle binding" evidence=ISS] [GO:0009306 "protein
secretion" evidence=ISS] HAMAP:MF_00920 InterPro:IPR000897
InterPro:IPR003593 InterPro:IPR004390 InterPro:IPR013822
Pfam:PF00448 Pfam:PF02881 PROSITE:PS00300 SMART:SM00382
SMART:SM00962 GO:GO:0005525 GO:GO:0005737 GO:GO:0003924
EMBL:CP000025 GenomeReviews:CP000025_GR GO:GO:0031226
eggNOG:COG0552 KO:K03110 ProtClustDB:PRK10416 GO:GO:0006614
SUPFAM:SSF47364 TIGRFAMs:TIGR00064 HOGENOM:HOG000036277
RefSeq:YP_179327.1 ProteinModelPortal:Q5HTQ8 STRING:Q5HTQ8
GeneID:3231847 KEGG:cjr:CJE1340 PATRIC:20044480 OMA:DLVTPKQ
BioCyc:CJEJ195099:GJC0-1366-MONOMER Uniprot:Q5HTQ8
Length = 288
Score = 223 (83.6 bits), Expect = 1.4e-17, P = 1.4e-17
Identities = 56/159 (35%), Positives = 83/159 (52%)
Query: 408 QGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCS 467
Q +PFV GVNG GK+T++AK+ + N V++ ACDTFRAGA+EQL+ + +
Sbjct: 80 QEKPFVELILGVNGAGKTTSIAKLAYLYKNQNQKVILGACDTFRAGAIEQLKLWAQKVD- 138
Query: 468 LHPAAKHGGREMVQLFEKGYGKDPAEIAFRAISHARDMHIDVVLIDTAGRMQDNEPLMRA 527
V + G DP+ +AF IS A+ D V+IDTAGR+Q+ + L
Sbjct: 139 ------------VDIVLTAQGHDPSAVAFDTISKAKAKDFDRVIIDTAGRLQNQKNLAHE 186
Query: 528 LAKLVKVNQ------PDLLLFVGEALVGNEAVDQLVKFN 560
L K+V+++ P + V + GN + Q FN
Sbjct: 187 LEKIVRISNKALEGAPHRKILVLDGTQGNAGILQAKAFN 225
Score = 181 (68.8 bits), Expect = 2.0e-11, P = 2.0e-11
Identities = 49/148 (33%), Positives = 75/148 (50%)
Query: 488 GKDPAEIAFRAISHARDMHIDVVLIDTAGRMQDNEPLMRALAKLVKVNQ------PDLLL 541
G DP+ +AF IS A+ D V+IDTAGR+Q+ + L L K+V+++ P +
Sbjct: 147 GHDPSAVAFDTISKAKAKDFDRVIIDTAGRLQNQKNLAHELEKIVRISNKALEGAPHRKI 206
Query: 542 FVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTIDDKVGAAISMTYITG 601
V + GN + Q FN + +DG+++TK D K GA S+
Sbjct: 207 LVLDGTQGNAGILQAKAFNELVK----------LDGVIITKLDGTA-KGGALFSIARELE 255
Query: 602 QPIVFVGTGQTYTDLKSLNAKAVVNALM 629
PI +VG G+ TDL+ NA A ++ L+
Sbjct: 256 LPIFYVGVGEQMTDLQEFNANAYLDTLL 283
>UNIPROTKB|P0AGD7 [details] [associations]
symbol:ffh species:83333 "Escherichia coli K-12"
[GO:0048500 "signal recognition particle" evidence=IEA;IMP]
[GO:0005525 "GTP binding" evidence=IEA;ISS;IMP;IDA] [GO:0006612
"protein targeting to membrane" evidence=IMP] [GO:0030529
"ribonucleoprotein complex" evidence=IDA] [GO:0003924 "GTPase
activity" evidence=IEA;ISS;IMP;IDA] [GO:0008312 "7S RNA binding"
evidence=IEA] [GO:0006614 "SRP-dependent cotranslational protein
targeting to membrane" evidence=IEA] [GO:0005786 "signal
recognition particle, endoplasmic reticulum targeting"
evidence=IEA] [GO:0006184 "GTP catabolic process" evidence=IEA;IMP]
[GO:0003723 "RNA binding" evidence=IEA] HAMAP:MF_00306
InterPro:IPR000897 InterPro:IPR003593 InterPro:IPR004125
InterPro:IPR004780 InterPro:IPR013822 InterPro:IPR022941
Pfam:PF00448 Pfam:PF02881 Pfam:PF02978 PROSITE:PS00300
SMART:SM00382 SMART:SM00962 SMART:SM00963 GO:GO:0005525 EMBL:U00096
EMBL:AP009048 GenomeReviews:AP009048_GR GenomeReviews:U00096_GR
GO:GO:0006612 GO:GO:0003924 GO:GO:0008312 PDB:2XXA PDBsum:2XXA
TCDB:3.A.5.1.1 GO:GO:0006614 SUPFAM:SSF47364 PDB:2XKV PDBsum:2XKV
EMBL:X01818 PDB:2J28 PDBsum:2J28 GO:GO:0005786 eggNOG:COG0541
KO:K03106 Gene3D:1.10.260.30 SUPFAM:SSF47446 HOGENOM:HOG000036164
PANTHER:PTHR11564:SF7 TIGRFAMs:TIGR00959 OMA:GQQVVKI PIR:E65039
RefSeq:NP_417101.1 RefSeq:YP_490833.1 PDB:1DUL PDB:1HQ1 PDB:2PXB
PDB:2PXD PDB:2PXE PDB:2PXF PDB:2PXK PDB:2PXL PDB:2PXP PDB:2PXQ
PDB:2PXT PDB:2PXU PDB:2PXV PDB:3LQX PDBsum:1DUL PDBsum:1HQ1
PDBsum:2PXB PDBsum:2PXD PDBsum:2PXE PDBsum:2PXF PDBsum:2PXK
PDBsum:2PXL PDBsum:2PXP PDBsum:2PXQ PDBsum:2PXT PDBsum:2PXU
PDBsum:2PXV PDBsum:3LQX ProteinModelPortal:P0AGD7 SMR:P0AGD7
DIP:DIP-31865N IntAct:P0AGD7 MINT:MINT-1218614 PRIDE:P0AGD7
EnsemblBacteria:EBESCT00000004690 EnsemblBacteria:EBESCT00000014850
GeneID:12933092 GeneID:947102 KEGG:ecj:Y75_p2558 KEGG:eco:b2610
PATRIC:32120619 EchoBASE:EB0296 EcoGene:EG10300
ProtClustDB:PRK10867 BioCyc:EcoCyc:EG10300-MONOMER
BioCyc:ECOL316407:JW5414-MONOMER EvolutionaryTrace:P0AGD7
Genevestigator:P0AGD7 GO:GO:0048500 Uniprot:P0AGD7
Length = 453
Score = 240 (89.5 bits), Expect = 2.6e-17, P = 2.6e-17
Identities = 68/220 (30%), Positives = 114/220 (51%)
Query: 411 PFVMAFCGVNGVGKSTNLAKICFWLIENNLN-VLIAACDTFRAGAVEQLRTHVRHLCSLH 469
P V+ G+ G GK+T++ K+ +L E + VL+ + D +R A++QL T
Sbjct: 100 PAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLET--------- 150
Query: 470 PAAKHGGREMVQLFEKGYGKDPAEIAFRAISHARDMHIDVVLIDTAGRMQDNEPLMRALA 529
A+ G V F G+ P +I A+ A+ DV+L+DTAGR+ +E +M +
Sbjct: 151 -LAEQVG---VDFFPSDVGQKPVDIVNAALKEAKLKFYDVLLVDTAGRLHVDEAMMDEIK 206
Query: 530 KLVKVNQPDLLLFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTIDDK 589
++ P LFV +A+ G +A + FN A+ P + G+VLTK D D +
Sbjct: 207 QVHASINPVETLFVVDAMTGQDAANTAKAFNEAL--------P--LTGVVLTKVDG-DAR 255
Query: 590 VGAAISMTYITGQPIVFVGTGQTYTDLKSLNAKAVVNALM 629
GAA+S+ +ITG+PI F+G G+ L+ + + + ++
Sbjct: 256 GGAALSIRHITGKPIKFLGVGEKTEALEPFHPDRIASRIL 295
>GENEDB_PFALCIPARUM|PF14_0477 [details] [associations]
symbol:PF14_0477 "signal recognition particle
54 kDa protein, putative" species:5833 "Plasmodium falciparum"
[GO:0005048 "signal sequence binding" evidence=ISS] HAMAP:MF_00306
InterPro:IPR000897 InterPro:IPR003593 InterPro:IPR004125
InterPro:IPR006325 InterPro:IPR013822 InterPro:IPR022941
Pfam:PF00448 Pfam:PF02881 Pfam:PF02978 PROSITE:PS00300
SMART:SM00382 SMART:SM00962 SMART:SM00963 GO:GO:0005525
GO:GO:0003924 GO:GO:0006184 EMBL:AE014187 GO:GO:0005048
GO:GO:0008312 GO:GO:0006614 SUPFAM:SSF47364 HOGENOM:HOG000036165
KO:K03106 Gene3D:1.10.260.30 SUPFAM:SSF47446 TIGRFAMs:TIGR01425
GO:GO:0048500 HSSP:P70722 RefSeq:XP_001348651.1
ProteinModelPortal:Q8IKX4 EnsemblProtists:PF14_0477:mRNA
GeneID:812059 KEGG:pfa:PF14_0477 EuPathDB:PlasmoDB:PF3D7_1450100
OMA:QMANALP ProtClustDB:CLSZ2514463 Uniprot:Q8IKX4
Length = 500
Score = 238 (88.8 bits), Expect = 5.9e-17, P = 5.9e-17
Identities = 85/306 (27%), Positives = 145/306 (47%)
Query: 334 ILEKMKDHLIAKNVAADIAVKLCDSVALKLEGKVLGTFESVANTVKSTLTDALVQILSPK 393
++E+ +I + +DI V + ++ + + N K LVQ K
Sbjct: 27 VIEECLKEIIRALILSDINVSYLKDIKSNIKNNIEKNIDIYGNNKKK-----LVQ----K 77
Query: 394 RRVDILRDALEAKKQG-RPF-----VMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAAC 447
V+ L LE KK+G P V+ F G+ G GK+T K + + +
Sbjct: 78 YVVEELIKLLEGKKEGYNPVKGKRNVILFVGLQGSGKTTTCTKYAHYYQKKGFKTALVCA 137
Query: 448 DTFRAGAVEQLRTHVRHLCSLHPAAKHGGREMVQL-FEKGYGK-DPAEIAFRAIS-HARD 504
DTFRAGA +QL+ + AAK V++ F Y + DP +IA ++ +D
Sbjct: 138 DTFRAGAFDQLKQN---------AAK------VKIPFYGSYSEVDPVKIATDGVNAFLKD 182
Query: 505 MHIDVVLIDTAGR-MQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQLVKFNNAM 563
+ D++++D++GR Q+NE L + ++ QP+ ++FV ++ +G DQ + F N++
Sbjct: 183 KY-DLIIVDSSGRHKQENE-LFEEMIQVENSIQPEEIIFVIDSHIGQSCHDQAMAFKNSV 240
Query: 564 ADHSLSDNPHLIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGTGQTYTDLKSLNAKA 623
+ + I++TK D K G A+S TG PI F+GTG+ D + AK+
Sbjct: 241 S----------LGSIIITKIDG-HAKGGGALSAVAATGCPITFIGTGEHVNDFEKFEAKS 289
Query: 624 VVNALM 629
V+ L+
Sbjct: 290 FVSRLL 295
>UNIPROTKB|Q8IKX4 [details] [associations]
symbol:PF14_0477 "Signal recognition particle SRP54,
putative" species:36329 "Plasmodium falciparum 3D7" [GO:0005048
"signal sequence binding" evidence=ISS] HAMAP:MF_00306
InterPro:IPR000897 InterPro:IPR003593 InterPro:IPR004125
InterPro:IPR006325 InterPro:IPR013822 InterPro:IPR022941
Pfam:PF00448 Pfam:PF02881 Pfam:PF02978 PROSITE:PS00300
SMART:SM00382 SMART:SM00962 SMART:SM00963 GO:GO:0005525
GO:GO:0003924 GO:GO:0006184 EMBL:AE014187 GO:GO:0005048
GO:GO:0008312 GO:GO:0006614 SUPFAM:SSF47364 HOGENOM:HOG000036165
KO:K03106 Gene3D:1.10.260.30 SUPFAM:SSF47446 TIGRFAMs:TIGR01425
GO:GO:0048500 HSSP:P70722 RefSeq:XP_001348651.1
ProteinModelPortal:Q8IKX4 EnsemblProtists:PF14_0477:mRNA
GeneID:812059 KEGG:pfa:PF14_0477 EuPathDB:PlasmoDB:PF3D7_1450100
OMA:QMANALP ProtClustDB:CLSZ2514463 Uniprot:Q8IKX4
Length = 500
Score = 238 (88.8 bits), Expect = 5.9e-17, P = 5.9e-17
Identities = 85/306 (27%), Positives = 145/306 (47%)
Query: 334 ILEKMKDHLIAKNVAADIAVKLCDSVALKLEGKVLGTFESVANTVKSTLTDALVQILSPK 393
++E+ +I + +DI V + ++ + + N K LVQ K
Sbjct: 27 VIEECLKEIIRALILSDINVSYLKDIKSNIKNNIEKNIDIYGNNKKK-----LVQ----K 77
Query: 394 RRVDILRDALEAKKQG-RPF-----VMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAAC 447
V+ L LE KK+G P V+ F G+ G GK+T K + + +
Sbjct: 78 YVVEELIKLLEGKKEGYNPVKGKRNVILFVGLQGSGKTTTCTKYAHYYQKKGFKTALVCA 137
Query: 448 DTFRAGAVEQLRTHVRHLCSLHPAAKHGGREMVQL-FEKGYGK-DPAEIAFRAIS-HARD 504
DTFRAGA +QL+ + AAK V++ F Y + DP +IA ++ +D
Sbjct: 138 DTFRAGAFDQLKQN---------AAK------VKIPFYGSYSEVDPVKIATDGVNAFLKD 182
Query: 505 MHIDVVLIDTAGR-MQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQLVKFNNAM 563
+ D++++D++GR Q+NE L + ++ QP+ ++FV ++ +G DQ + F N++
Sbjct: 183 KY-DLIIVDSSGRHKQENE-LFEEMIQVENSIQPEEIIFVIDSHIGQSCHDQAMAFKNSV 240
Query: 564 ADHSLSDNPHLIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGTGQTYTDLKSLNAKA 623
+ + I++TK D K G A+S TG PI F+GTG+ D + AK+
Sbjct: 241 S----------LGSIIITKIDG-HAKGGGALSAVAATGCPITFIGTGEHVNDFEKFEAKS 289
Query: 624 VVNALM 629
V+ L+
Sbjct: 290 FVSRLL 295
>TAIR|locus:2037803 [details] [associations]
symbol:ATHSRP54A "signal recognition particle 54 kDa
subunit" species:3702 "Arabidopsis thaliana" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003729 "mRNA binding"
evidence=ISS] [GO:0005525 "GTP binding" evidence=IEA;ISS]
[GO:0005737 "cytoplasm" evidence=ISM;ISS] [GO:0005786 "signal
recognition particle, endoplasmic reticulum targeting"
evidence=ISS] [GO:0006614 "SRP-dependent cotranslational protein
targeting to membrane" evidence=IEA] [GO:0006617 "SRP-dependent
cotranslational protein targeting to membrane, signal sequence
recognition" evidence=ISS] [GO:0008312 "7S RNA binding"
evidence=IEA;ISS] [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0048500 "signal recognition particle"
evidence=IEA] [GO:0010267 "production of ta-siRNAs involved in RNA
interference" evidence=RCA] [GO:0035196 "production of miRNAs
involved in gene silencing by miRNA" evidence=RCA] [GO:0051607
"defense response to virus" evidence=RCA] InterPro:IPR000897
InterPro:IPR003593 InterPro:IPR004125 InterPro:IPR006325
InterPro:IPR013822 InterPro:IPR022941 Pfam:PF00448 Pfam:PF02881
Pfam:PF02978 PROSITE:PS00300 SMART:SM00382 SMART:SM00962
SMART:SM00963 GO:GO:0005525 EMBL:CP002684 GenomeReviews:CT485782_GR
GO:GO:0003924 GO:GO:0006184 EMBL:AC007591 GO:GO:0008312
GO:GO:0006614 SUPFAM:SSF47364 GO:GO:0005786 EMBL:L19997
EMBL:AF344329 EMBL:AY086187 IPI:IPI00526094 PIR:S42550
RefSeq:NP_563970.1 UniGene:At.24597 ProteinModelPortal:P37106
SMR:P37106 DIP:DIP-59002N STRING:P37106 PaxDb:P37106 PRIDE:P37106
EnsemblPlants:AT1G15310.1 GeneID:838100 KEGG:ath:AT1G15310
TAIR:At1g15310 eggNOG:COG0541 HOGENOM:HOG000036165
InParanoid:P37106 KO:K03106 OMA:KVIPPQM PhylomeDB:P37106
ProtClustDB:CLSN2686827 Genevestigator:P37106 GermOnline:AT1G15310
Gene3D:1.10.260.30 SUPFAM:SSF47446 TIGRFAMs:TIGR01425
Uniprot:P37106
Length = 479
Score = 237 (88.5 bits), Expect = 6.7e-17, P = 6.7e-17
Identities = 68/297 (22%), Positives = 138/297 (46%)
Query: 334 ILEKMKDHLIAKNVAADIAVKLCDSVALKLEGKVLGTFESVANTVKSTLTD-ALVQILSP 392
+L + + + +D++ L + + ++ K++ + A K + + A+ + L
Sbjct: 27 VLNDFLNEITRALLQSDVSFGLVEKMQTNIK-KIVNLDDLAAGHNKRLIIEQAIFKELC- 84
Query: 393 KRRVDILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRA 452
R +D + A A K+ +P V+ F G+ G GK+T K ++ + + DTFRA
Sbjct: 85 -RMLDPGKPAF-APKKAKPSVVMFVGLQGAGKTTTCTKYAYYHQKKGYKAALVCADTFRA 142
Query: 453 GAVEQLRTHVRHLCSLHPAAKHGGREMVQLFEKGYGKDPAEIAFRAISHARDMHIDVVLI 512
GA +QL+ + AK + + DP +IA + + D++++
Sbjct: 143 GAFDQLKQNATK-------AK------IPFYGSYTESDPVKIAVEGVDRFKKEKCDLIIV 189
Query: 513 DTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQLVKFNNAMADHSLSDNP 572
DT+GR + L + ++ + +PDL++FV ++ +G A +Q F ++
Sbjct: 190 DTSGRHKQAASLFEEMRQVAEATEPDLVIFVMDSSIGQAAFEQAEAFKETVS-------- 241
Query: 573 HLIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGTGQTYTDLKSLNAKAVVNALM 629
+ +++TK D K G A+S T P++F+GTG+ + + + K V+ L+
Sbjct: 242 --VGAVIITKMDG-HAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLL 295
>TIGR_CMR|CHY_1434 [details] [associations]
symbol:CHY_1434 "signal recognition particle protein"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0003924 "GTPase activity" evidence=ISS] [GO:0005048 "signal
sequence binding" evidence=ISS] [GO:0009306 "protein secretion"
evidence=ISS] [GO:0048501 "signal recognition particle, plasma
membrane targeting" evidence=ISS] HAMAP:MF_00306 InterPro:IPR000897
InterPro:IPR003593 InterPro:IPR004125 InterPro:IPR004780
InterPro:IPR013822 InterPro:IPR022941 Pfam:PF00448 Pfam:PF02881
Pfam:PF02978 PROSITE:PS00300 SMART:SM00382 SMART:SM00962
SMART:SM00963 GO:GO:0005525 EMBL:CP000141 GenomeReviews:CP000141_GR
GO:GO:0003924 GO:GO:0006184 GO:GO:0008312 GO:GO:0006614
SUPFAM:SSF47364 GO:GO:0005786 eggNOG:COG0541 HOGENOM:HOG000036165
KO:K03106 Gene3D:1.10.260.30 SUPFAM:SSF47446 PANTHER:PTHR11564:SF7
TIGRFAMs:TIGR00959 OMA:GQQVVKI RefSeq:YP_360266.1
ProteinModelPortal:Q3AC68 SMR:Q3AC68 STRING:Q3AC68 GeneID:3728502
KEGG:chy:CHY_1434 PATRIC:21275999
BioCyc:CHYD246194:GJCN-1433-MONOMER Uniprot:Q3AC68
Length = 446
Score = 234 (87.4 bits), Expect = 1.1e-16, P = 1.1e-16
Identities = 67/207 (32%), Positives = 105/207 (50%)
Query: 411 PFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHP 470
P ++ G+ G GK+T AK+ + L + L+ A D +R A++QL+
Sbjct: 101 PTIIMLVGLQGAGKTTTAAKLAYLLKKQGKKPLLVAADVYRPAAIKQLQVL--------- 151
Query: 471 AAKHGGREMVQLFEKGYGKDPAEIAFRAISHARDMHIDVVLIDTAGRMQDNEPLMRALAK 530
G V +F G + P +IA +I+ A+ + V+IDTAGR+ NE LM L K
Sbjct: 152 ----GDTIDVPVFTMGE-QSPVDIAKASINFAKSNLKNYVIIDTAGRLHINEELMDELKK 206
Query: 531 LVKVNQPDLLLFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTIDDKV 590
+ V P +L V +A+ G +AV+ FN+ + + G++LTK D D K
Sbjct: 207 IKDVVHPHEILLVVDAMTGQDAVNVAKSFNDELG----------LTGVILTKLDG-DTKG 255
Query: 591 GAAISMTYITGQPIVFVGTGQTYTDLK 617
GAA+S+ +TG PI F G G+ +L+
Sbjct: 256 GAALSVKAVTGCPIKFAGMGEKIENLE 282
>UNIPROTKB|P83749 [details] [associations]
symbol:ftsY "Signal recognition particle receptor FtsY"
species:271 "Thermus aquaticus" [GO:0005515 "protein binding"
evidence=IPI] HAMAP:MF_00920 InterPro:IPR000897 InterPro:IPR003593
InterPro:IPR004390 InterPro:IPR013822 Pfam:PF00448 Pfam:PF02881
PROSITE:PS00300 SMART:SM00382 SMART:SM00962 SMART:SM00963
GO:GO:0005525 GO:GO:0005886 GO:GO:0005737 GO:GO:0006184
GO:GO:0017111 GO:GO:0006614 SUPFAM:SSF47364 TIGRFAMs:TIGR00064
EMBL:AY484668 PDB:1OKK PDB:1RJ9 PDB:2CNW PDB:2IYL PDB:2J7P PDB:2Q9A
PDB:2Q9B PDB:2Q9C PDB:2XKV PDBsum:1OKK PDBsum:1RJ9 PDBsum:2CNW
PDBsum:2IYL PDBsum:2J7P PDBsum:2Q9A PDBsum:2Q9B PDBsum:2Q9C
PDBsum:2XKV ProteinModelPortal:P83749 SMR:P83749 IntAct:P83749
EvolutionaryTrace:P83749 Uniprot:P83749
Length = 304
Score = 220 (82.5 bits), Expect = 1.5e-16, P = 1.5e-16
Identities = 81/307 (26%), Positives = 138/307 (44%)
Query: 335 LEKMKDHLIAKNVAADIAVKLCDSVALKLEGKVLGTFESVANTVKSTLTDALVQILSPKR 394
LE++ + L +AAD+ + + + ++ S +K + + LV +L P
Sbjct: 28 LEEVLEELEMALLAADVGLSATEEILQEVRA-------SGRKDLKEAVKEKLVGMLEPDE 80
Query: 395 RVDILRDALEAKKQGRPF-----VMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDT 449
R LR ++ +P V+ GVNGVGK+T +AK+ + V+ A DT
Sbjct: 81 RRATLRKLGFNPQKPKPVEPKGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDT 140
Query: 450 FRAGAVEQLRTHVRHLCSLHPAAKHGGREMVQLFEKGYGKDPAEIAFRAISHARDMHIDV 509
FRA QL ++ G R + + + G DPA +A+ A+ + D+
Sbjct: 141 FRAAGGTQL-------------SEWGKRLSIPVIQGPEGTDPAALAYDAVQAMKARGYDL 187
Query: 510 VLIDTAGRMQDNEPLMRALAKLVKV------NQPDLLLFVGEALVGNEAVDQLVKFNNAM 563
+ +DTAGR+ LM L K+ + +P + V +A+ G ++Q KF+ A+
Sbjct: 188 LFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQNGLEQAKKFHEAV 247
Query: 564 ADHSLSDNPHLIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGTGQTYTDLKSLNAKA 623
+ G+++TK D K G I + PI FVG G+ DL+ + +A
Sbjct: 248 G----------LTGVIVTKLDGTA-KGGVLIPIVRTLKVPIKFVGVGEGPDDLQPFDPEA 296
Query: 624 VVNALMK 630
V AL++
Sbjct: 297 FVEALLE 303
>TAIR|locus:2150620 [details] [associations]
symbol:CPSRP54 "chloroplast signal recognition particle
54 kDa subunit" species:3702 "Arabidopsis thaliana" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003729 "mRNA binding"
evidence=ISS] [GO:0005048 "signal sequence binding" evidence=IDA]
[GO:0005525 "GTP binding" evidence=IEA;ISS] [GO:0005737 "cytoplasm"
evidence=ISM] [GO:0005786 "signal recognition particle, endoplasmic
reticulum targeting" evidence=ISS] [GO:0006614 "SRP-dependent
cotranslational protein targeting to membrane" evidence=IEA]
[GO:0006617 "SRP-dependent cotranslational protein targeting to
membrane, signal sequence recognition" evidence=ISS] [GO:0008312
"7S RNA binding" evidence=IEA;ISS] [GO:0009570 "chloroplast stroma"
evidence=IDA] [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0045038 "protein import into chloroplast
thylakoid membrane" evidence=IDA] [GO:0048500 "signal recognition
particle" evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0080085 "signal recognition particle, chloroplast targeting"
evidence=IMP] [GO:0009507 "chloroplast" evidence=IDA] [GO:0010267
"production of ta-siRNAs involved in RNA interference"
evidence=RCA] [GO:0019288 "isopentenyl diphosphate biosynthetic
process, mevalonate-independent pathway" evidence=RCA] [GO:0035196
"production of miRNAs involved in gene silencing by miRNA"
evidence=RCA] [GO:0051607 "defense response to virus" evidence=RCA]
InterPro:IPR000897 InterPro:IPR003593 InterPro:IPR004125
InterPro:IPR004780 InterPro:IPR013822 InterPro:IPR022941
Pfam:PF00448 Pfam:PF02881 Pfam:PF02978 PROSITE:PS00300
SMART:SM00382 SMART:SM00962 SMART:SM00963 GO:GO:0005525
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0009570 GO:GO:0003924
GO:GO:0006184 EMBL:AL162873 GO:GO:0008312 GO:GO:0006614
SUPFAM:SSF47364 GO:GO:0005786 PDB:2HUG PDB:3UI2 PDBsum:2HUG
PDBsum:3UI2 TCDB:3.A.5.1.2 GO:GO:0080085 eggNOG:COG0541 KO:K03106
Gene3D:1.10.260.30 SUPFAM:SSF47446 EMBL:Z21970 EMBL:AF092168
EMBL:AY050999 EMBL:BT000976 IPI:IPI00538977 PIR:S36637
RefSeq:NP_196014.1 UniGene:At.435 ProteinModelPortal:P37107
SMR:P37107 DIP:DIP-752N IntAct:P37107 MINT:MINT-126488
STRING:P37107 PaxDb:P37107 PRIDE:P37107 ProMEX:P37107
EnsemblPlants:AT5G03940.1 GeneID:830273 KEGG:ath:AT5G03940
GeneFarm:1888 TAIR:At5g03940 HOGENOM:HOG000036164 InParanoid:P37107
OMA:DSGKTEQ PhylomeDB:P37107 ProtClustDB:CLSN2686225
EvolutionaryTrace:P37107 Genevestigator:P37107 GermOnline:AT5G03940
PANTHER:PTHR11564:SF7 TIGRFAMs:TIGR00959 Uniprot:P37107
Length = 564
Score = 235 (87.8 bits), Expect = 1.7e-16, P = 1.7e-16
Identities = 68/215 (31%), Positives = 111/215 (51%)
Query: 403 LEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHV 462
L+ K G P V+ G+ GVGK+T AK+ +L + + ++ A D +R A++QL
Sbjct: 169 LQFAKSG-PTVILLAGLQGVGKTTVCAKLACYLKKQGKSCMLIAGDVYRPAAIDQL---- 223
Query: 463 RHLCSLHPAAKHGGREMVQLFEKGYGKDPAEIAFRAISHARDMHIDVVLIDTAGRMQDNE 522
G + V ++ G PA+IA + + A+ ++DVV++DTAGR+Q ++
Sbjct: 224 ---------VILGEQVGVPVYTAGTDVKPADIAKQGLKEAKKNNVDVVIMDTAGRLQIDK 274
Query: 523 PLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTK 582
+M L + K P +L V +A+ G EA + FN + I G +LTK
Sbjct: 275 GMMDELKDVKKFLNPTEVLLVVDAMTGQEAAALVTTFNVEIG----------ITGAILTK 324
Query: 583 FDTIDDKVGAAISMTYITGQPIVFVGTGQTYTDLK 617
D D + GAA+S+ ++G+PI VG G+ DL+
Sbjct: 325 LDG-DSRGGAALSVKEVSGKPIKLVGRGERMEDLE 358
>TIGR_CMR|CPS_0157 [details] [associations]
symbol:CPS_0157 "signal recognition particle-docking
protein FtsY" species:167879 "Colwellia psychrerythraea 34H"
[GO:0000910 "cytokinesis" evidence=ISS] [GO:0003924 "GTPase
activity" evidence=ISS] HAMAP:MF_00920 InterPro:IPR000897
InterPro:IPR003593 InterPro:IPR004390 InterPro:IPR013822
Pfam:PF00448 Pfam:PF02881 PROSITE:PS00300 SMART:SM00382
SMART:SM00962 SMART:SM00963 GO:GO:0005525 GO:GO:0005737
GO:GO:0003924 EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0031226
eggNOG:COG0552 HOGENOM:HOG000036278 KO:K03110 GO:GO:0006614
SUPFAM:SSF47364 TIGRFAMs:TIGR00064 RefSeq:YP_266925.1
ProteinModelPortal:Q48AI8 SMR:Q48AI8 STRING:Q48AI8 GeneID:3519649
KEGG:cps:CPS_0157 PATRIC:21463731 OMA:VEAVAIQ
BioCyc:CPSY167879:GI48-260-MONOMER Uniprot:Q48AI8
Length = 481
Score = 233 (87.1 bits), Expect = 1.9e-16, P = 1.9e-16
Identities = 68/236 (28%), Positives = 113/236 (47%)
Query: 334 ILEKMKDHLIAKNVAADIAVKLCDSVALKLEGKVLGTFESVANTVKSTLTDALVQILSPK 393
+ E+++ HL+ +V + +K+ +S+ K L ++ + +K L + + P
Sbjct: 212 LFEELETHLLLADVGVETTMKIIESLTQSANRKQLKDASALYDLLKIELKKVIEDVSQP- 270
Query: 394 RRVDILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAG 453
L + PFV+ GVNGVGK+T + K+ +V++AA DTFRA
Sbjct: 271 ---------LVIPEDDGPFVILMVGVNGVGKTTTIGKLAKQFQAQGKSVMLAAGDTFRAA 321
Query: 454 AVEQLRTHVRHLCSLHPAAKHGGREMVQLFEKGYGKDPAEIAFRAISHARDMHIDVVLID 513
AVEQL+ G R + + + G D A + F AIS A+ +D+++ D
Sbjct: 322 AVEQLQVW-------------GERNNIPVIAQHTGADSASVIFDAISAAKARKVDIIIAD 368
Query: 514 TAGRMQDNEPLMRALAKLVKV------NQPDLLLFVGEALVGNEAVDQLVKFNNAM 563
TAGR+Q+ LM L K+V+V N P ++ +A G A+ Q F+ A+
Sbjct: 369 TAGRLQNKAHLMEELKKVVRVMKKLDVNAPHEVMLTLDAGTGQNALSQTKLFDEAV 424
Score = 157 (60.3 bits), Expect = 4.9e-08, P = 4.9e-08
Identities = 46/160 (28%), Positives = 77/160 (48%)
Query: 475 GGREMVQLFEKGYGKDPAEIAFRAISHARDMHIDVVLIDTAGRMQDNEPLMRALAKLVKV 534
G R + + + G D A + F AIS A+ +D+++ DTAGR+Q+ LM L K+V+V
Sbjct: 330 GERNNIPVIAQHTGADSASVIFDAISAAKARKVDIIIADTAGRLQNKAHLMEELKKVVRV 389
Query: 535 ------NQPDLLLFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTIDD 588
N P ++ +A G A+ Q F+ A+ + G+ +TK D
Sbjct: 390 MKKLDVNAPHEVMLTLDAGTGQNALSQTKLFDEAVG----------LTGLTITKLDGTA- 438
Query: 589 KVGAAISMTYITGQPIVFVGTGQTYTDLKSLNAKAVVNAL 628
K G ++ PI ++G G+ DL+ N+ ++AL
Sbjct: 439 KGGVIFAVADKHSIPIRYLGVGEGIDDLRPFNSDDFIDAL 478
>SGD|S000006292 [details] [associations]
symbol:SRP54 "Signal recognition particle (SRP) subunit
(homolog of mammalian SRP54)" species:4932 "Saccharomyces
cerevisiae" [GO:0008312 "7S RNA binding" evidence=IEA;IDA]
[GO:0006614 "SRP-dependent cotranslational protein targeting to
membrane" evidence=IEA;IMP] [GO:0006617 "SRP-dependent
cotranslational protein targeting to membrane, signal sequence
recognition" evidence=IC;ISA] [GO:0005525 "GTP binding"
evidence=IEA;ISA] [GO:0006184 "GTP catabolic process" evidence=IEA]
[GO:0005048 "signal sequence binding" evidence=IPI] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0005096 "GTPase activator activity"
evidence=IEA] [GO:0048500 "signal recognition particle"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0045047
"protein targeting to ER" evidence=IPI] [GO:0005786 "signal
recognition particle, endoplasmic reticulum targeting"
evidence=IEA;IDA] [GO:0043547 "positive regulation of GTPase
activity" evidence=IEA] [GO:0003924 "GTPase activity" evidence=IEA]
InterPro:IPR000897 InterPro:IPR003593 InterPro:IPR004125
InterPro:IPR006325 InterPro:IPR013822 InterPro:IPR022941
Pfam:PF00448 Pfam:PF02881 Pfam:PF02978 PROSITE:PS00300
SMART:SM00382 SMART:SM00962 SMART:SM00963 SGD:S000006292
GO:GO:0005525 GO:GO:0005096 GO:GO:0043547 GO:GO:0003924
GO:GO:0006184 EMBL:BK006949 EMBL:U51033 GO:GO:0005048 GO:GO:0008312
SUPFAM:SSF47364 GO:GO:0005786 GO:GO:0006617 eggNOG:COG0541
HOGENOM:HOG000036165 KO:K03106 Gene3D:1.10.260.30 SUPFAM:SSF47446
TIGRFAMs:TIGR01425 GeneTree:ENSGT00550000074824 OrthoDB:EOG4TMV9N
EMBL:X16908 EMBL:M55517 EMBL:X51614 PIR:S69073 RefSeq:NP_015413.1
ProteinModelPortal:P20424 SMR:P20424 DIP:DIP-2943N IntAct:P20424
MINT:MINT-484768 STRING:P20424 PaxDb:P20424 PeptideAtlas:P20424
EnsemblFungi:YPR088C GeneID:856203 KEGG:sce:YPR088C CYGD:YPR088c
OMA:TAGRHKE NextBio:981405 Genevestigator:P20424 GermOnline:YPR088C
Uniprot:P20424
Length = 541
Score = 234 (87.4 bits), Expect = 2.0e-16, P = 2.0e-16
Identities = 74/309 (23%), Positives = 142/309 (45%)
Query: 327 TKSDMKPILEKMKDHLIAKNVAADIAVKLCDSVALKLEGKVLGTFESVANTVKSTLTDAL 386
T+ D ++ M ++ + +D+ + L + + ++L S +T + T L
Sbjct: 21 TQDDFTTSVDVMLKGIVTALLESDVNIALVSKLRNNIRSQLLSENRSEKSTTNAQ-TKKL 79
Query: 387 VQ--ILSPKRRVDILRDALEAK----KQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNL 440
+Q + ++ + + E K K+ + ++ F G+ G GK+T+ K+ + +
Sbjct: 80 IQKTVFDELCKL-VTCEGSEEKAFVPKKRKTNIIMFVGLQGSGKTTSCTKLAVYYSKRGF 138
Query: 441 NVLIAACDTFRAGAVEQLRTHVRHLCSLHPAAKHGGREMVQLFEKGYGKDPAEIAFRAIS 500
V + DTFRAGA +QL+ ++ R + + DPA++A I+
Sbjct: 139 KVGLVCADTFRAGAFDQLK-------------QNAIRARIPFYGSYTETDPAKVAEEGIN 185
Query: 501 HARDMHIDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQLVKFN 560
+ D++++DT+GR E L + + ++ V +P+ + V +A +G A Q F
Sbjct: 186 KFKKEKFDIIIVDTSGRHHQEEELFQEMIEISNVIKPNQTIMVLDASIGQAAEQQSKAFK 245
Query: 561 NAMADHSLSDNPHLIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGTGQTYTDLKSLN 620
+ SD I+LTK D + G AIS T PI+F+GTG+ DL+ +
Sbjct: 246 ES------SD----FGAIILTKMDG-HARGGGAISAVAATNTPIIFIGTGEHIHDLEKFS 294
Query: 621 AKAVVNALM 629
K+ ++ L+
Sbjct: 295 PKSFISKLL 303
>TAIR|locus:2028563 [details] [associations]
symbol:AT1G48900 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0005525 "GTP binding" evidence=IEA;ISS]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0005786 "signal
recognition particle, endoplasmic reticulum targeting"
evidence=ISS] [GO:0006614 "SRP-dependent cotranslational protein
targeting to membrane" evidence=IEA] [GO:0006617 "SRP-dependent
cotranslational protein targeting to membrane, signal sequence
recognition" evidence=ISS] [GO:0008312 "7S RNA binding"
evidence=IEA;ISS] [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0048500 "signal recognition particle"
evidence=IEA] [GO:0005829 "cytosol" evidence=IDA] [GO:0010267
"production of ta-siRNAs involved in RNA interference"
evidence=RCA] [GO:0035196 "production of miRNAs involved in gene
silencing by miRNA" evidence=RCA] [GO:0051607 "defense response to
virus" evidence=RCA] InterPro:IPR000897 InterPro:IPR003593
InterPro:IPR004125 InterPro:IPR006325 InterPro:IPR013822
InterPro:IPR022941 Pfam:PF00448 Pfam:PF02881 Pfam:PF02978
PROSITE:PS00300 SMART:SM00382 SMART:SM00962 SMART:SM00963
GO:GO:0005525 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005829
GO:GO:0003924 GO:GO:0006184 EMBL:AC084414 GO:GO:0008312
GO:GO:0006614 SUPFAM:SSF47364 GO:GO:0005786 eggNOG:COG0541
HOGENOM:HOG000036165 KO:K03106 ProtClustDB:CLSN2686827
Gene3D:1.10.260.30 SUPFAM:SSF47446 TIGRFAMs:TIGR01425 EMBL:U12127
EMBL:AY054273 EMBL:AY052331 EMBL:AF446864 IPI:IPI00531486
PIR:G96526 RefSeq:NP_564535.1 UniGene:At.23838
ProteinModelPortal:P49967 SMR:P49967 STRING:P49967 PaxDb:P49967
PRIDE:P49967 EnsemblPlants:AT1G48900.1 GeneID:841312
KEGG:ath:AT1G48900 GeneFarm:1889 TAIR:At1g48900 InParanoid:P49967
OMA:NVQHMSK PhylomeDB:P49967 Genevestigator:P49967
GermOnline:AT1G48900 Uniprot:P49967
Length = 495
Score = 233 (87.1 bits), Expect = 2.1e-16, P = 2.1e-16
Identities = 58/225 (25%), Positives = 108/225 (48%)
Query: 405 AKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRH 464
A K+ + V+ F G+ G GK+T K ++ + + DTFRAGA +QL+ +
Sbjct: 95 APKKAKASVVMFVGLQGAGKTTTCTKYAYYHQKKGYKPALVCADTFRAGAFDQLKQNATK 154
Query: 465 LCSLHPAAKHGGREMVQLFEKGYGKDPAEIAFRAISHARDMHIDVVLIDTAGRMQDNEPL 524
AK + + DP +IA + + + D++++DT+GR + L
Sbjct: 155 -------AK------IPFYGSYTESDPVKIAVEGVDTFKKENCDLIIVDTSGRHKQEASL 201
Query: 525 MRALAKLVKVNQPDLLLFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFD 584
+ ++ + +PDL++FV ++ +G A DQ F ++A + +++TK D
Sbjct: 202 FEEMRQVAEATKPDLVIFVMDSSIGQAAFDQAQAFKQSVA----------VGAVIITKMD 251
Query: 585 TIDDKVGAAISMTYITGQPIVFVGTGQTYTDLKSLNAKAVVNALM 629
K G A+S T P++F+GTG+ + + + K V+ L+
Sbjct: 252 G-HAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLL 295
>TIGR_CMR|ECH_1111 [details] [associations]
symbol:ECH_1111 "signal recognition particle-docking
protein FtsY" species:205920 "Ehrlichia chaffeensis str. Arkansas"
[GO:0003924 "GTPase activity" evidence=ISS] [GO:0005047 "signal
recognition particle binding" evidence=ISS] [GO:0009306 "protein
secretion" evidence=ISS] InterPro:IPR000897 InterPro:IPR003593
InterPro:IPR004390 InterPro:IPR013822 Pfam:PF00448 Pfam:PF02881
SMART:SM00382 SMART:SM00962 SMART:SM00963 GO:GO:0005525
EMBL:CP000236 GenomeReviews:CP000236_GR GO:GO:0006184 GO:GO:0017111
eggNOG:COG0552 HOGENOM:HOG000036278 KO:K03110 ProtClustDB:PRK10416
GO:GO:0006614 SUPFAM:SSF47364 TIGRFAMs:TIGR00064 RefSeq:YP_507895.1
ProteinModelPortal:Q2GF88 STRING:Q2GF88 GeneID:3927733
KEGG:ech:ECH_1111 PATRIC:20577558 OMA:ADMGVET
BioCyc:ECHA205920:GJNR-1114-MONOMER Uniprot:Q2GF88
Length = 310
Score = 221 (82.9 bits), Expect = 2.3e-16, P = 2.3e-16
Identities = 78/247 (31%), Positives = 115/247 (46%)
Query: 322 GSKNLTKSDMK---PILEKMKDHLIAKNVAADIAVKLCDSVALKLEGKVLGTFESVANTV 378
G K + S K LE++K+ LI +V D A L KL + NTV
Sbjct: 27 GIKKIFSSGKKVDQETLEELKELLITADVGYDNASLLTQ----KLASTKFNEMDD--NTV 80
Query: 379 KSTLTDALVQILSPKRRVDILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIEN 438
K L +++ IL L+ +P V+ CG NG GK+T + K+
Sbjct: 81 KQKLAESIENIL--------LQVEKPLSINNKPHVIMVCGTNGNGKTTTIGKLAHRFKNT 132
Query: 439 NLNVLIAACDTFRAGAVEQLRTHVRHLCSLHPAAKHGGREMVQLFEKGYGKDPAEIAFRA 498
VL+AACDTFRA A EQL + + P G + G D A IA++A
Sbjct: 133 GKKVLVAACDTFRAAATEQLIVWSQKVN--FPVVT--GNQ---------GADAASIAYQA 179
Query: 499 ISHARDMHIDVVLIDTAGRMQDNEPLMRALAKLVKV------NQPDLLLFVGEALVGNEA 552
+ A + DV+LIDTAGR+ +++ LM LAK+ ++ N P ++ + +A G A
Sbjct: 180 MQQALNEQTDVLLIDTAGRLHNHKNLMEELAKIRRIINKHDNNAPHDVILILDATTGQNA 239
Query: 553 VDQLVKF 559
V+Q+ F
Sbjct: 240 VNQVDAF 246
>TIGR_CMR|ECH_0475 [details] [associations]
symbol:ECH_0475 "signal recognition particle protein"
species:205920 "Ehrlichia chaffeensis str. Arkansas" [GO:0003924
"GTPase activity" evidence=ISS] [GO:0005048 "signal sequence
binding" evidence=ISS] [GO:0006617 "SRP-dependent cotranslational
protein targeting to membrane, signal sequence recognition"
evidence=ISS] [GO:0009306 "protein secretion" evidence=ISS]
[GO:0048501 "signal recognition particle, plasma membrane
targeting" evidence=ISS] InterPro:IPR000897 InterPro:IPR003593
InterPro:IPR004125 InterPro:IPR004780 InterPro:IPR013822
Pfam:PF00448 Pfam:PF02881 Pfam:PF02978 SMART:SM00382 SMART:SM00962
SMART:SM00963 GO:GO:0005525 EMBL:CP000236 GenomeReviews:CP000236_GR
GO:GO:0003924 GO:GO:0006184 GO:GO:0008312 GO:GO:0006614
SUPFAM:SSF47364 eggNOG:COG0541 KO:K03106 Gene3D:1.10.260.30
SUPFAM:SSF47446 HOGENOM:HOG000036164 PANTHER:PTHR11564:SF7
TIGRFAMs:TIGR00959 OMA:GQQVVKI ProtClustDB:PRK10867 GO:GO:0048500
RefSeq:YP_507291.1 ProteinModelPortal:Q2GGZ2 STRING:Q2GGZ2
GeneID:3927281 KEGG:ech:ECH_0475 PATRIC:20576422
BioCyc:ECHA205920:GJNR-477-MONOMER Uniprot:Q2GGZ2
Length = 448
Score = 230 (86.0 bits), Expect = 3.3e-16, P = 3.3e-16
Identities = 82/318 (25%), Positives = 152/318 (47%)
Query: 324 KNLTKSDMKPILEKMKDHLIAKNVAADIAVKLCDSVALKLEGKV-LGTFESVANTVK--- 379
++LT S + +++KM+ + + D A++ VAL LE V L + + VK
Sbjct: 3 ESLTSS-LTNVIQKMQSKHVISSEDFDAAMEEV-KVAL-LEADVSLAVVKDFISNVKEKI 59
Query: 380 ---STLTDALVQILSPKRRVDILRDALEAKKQ----GRPF-VMAFCGVNGVGKSTNLAKI 431
+T+ L + K+ D L + L ++K +P V+ G+ GVGK+T AK+
Sbjct: 60 VGGTTVKGVLPTQMIIKKIQDCLIEVLGSEKCELDISKPLSVIMMVGLQGVGKTTTTAKL 119
Query: 432 CFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHPAAKHGGREMVQLFEKGYGKDP 491
L V++A+ D +R A +QL K + + + E + P
Sbjct: 120 ALKLKNKKKEVVMASLDVYRPAAQKQLEI----------LGKQIDVQTLPIIEN---QAP 166
Query: 492 AEIAFRAISHARDMHIDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNE 551
+I RA+ +A+ + DV+++DTAGR+ ++ +M L + + P ++ V ++++G +
Sbjct: 167 IDIVKRAMDNAQQANCDVLILDTAGRLHVDQVMMEELRAIKDLTSPSEVILVVDSMIGQD 226
Query: 552 AVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGTGQ 611
A++ FN+ + I GI+LT+ D D + GAA+SM G PI F+ G+
Sbjct: 227 AINVAKSFNDNIG----------ITGIILTRIDG-DSRGGAALSMKMSVGSPIKFIANGE 275
Query: 612 TYTDLKSLNAKAVVNALM 629
+DL + + ++
Sbjct: 276 KLSDLDDFYPERIAKRIL 293
>TIGR_CMR|VC_0147 [details] [associations]
symbol:VC_0147 "signal recognition particle-docking protein
FtsY" species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0003924
"GTPase activity" evidence=ISS] [GO:0005047 "signal recognition
particle binding" evidence=ISS] [GO:0009306 "protein secretion"
evidence=ISS] HAMAP:MF_00920 InterPro:IPR000897 InterPro:IPR003593
InterPro:IPR004390 InterPro:IPR013822 Pfam:PF00448 Pfam:PF02881
PROSITE:PS00300 SMART:SM00382 SMART:SM00962 SMART:SM00963
GO:GO:0005525 GO:GO:0005737 GO:GO:0051301 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0003924 GO:GO:0031226 KO:K03110
ProtClustDB:PRK10416 GO:GO:0006614 SUPFAM:SSF47364
TIGRFAMs:TIGR00064 OMA:VEAVAIQ HSSP:P10121 PIR:B82360
RefSeq:NP_229805.1 ProteinModelPortal:Q9KVJ6 SMR:Q9KVJ6
DNASU:2614855 GeneID:2614855 KEGG:vch:VC0147 PATRIC:20079332
Uniprot:Q9KVJ6
Length = 391
Score = 227 (85.0 bits), Expect = 4.3e-16, P = 4.3e-16
Identities = 67/234 (28%), Positives = 114/234 (48%)
Query: 334 ILEKMKDHLIAKNVAADIAVKLCDSVALKLEGKVLGTFESVANTVKSTLTDALVQILSPK 393
+ E++++ L+ +V D K+ ++ + + L E++ +K + + L Q+ P
Sbjct: 120 LFEELEEQLLIADVGMDTTSKIIANLTARASRQQLRDGEALYGLLKEEMAEILSQVEQPL 179
Query: 394 RRVDILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAG 453
++ +K +P+V+ GVNGVGK+T + K+ V++AA DTFRA
Sbjct: 180 --------VIDTEK--KPYVILMVGVNGVGKTTTIGKLAKQFQAQGKKVMLAAGDTFRAA 229
Query: 454 AVEQLRTHVRHLCSLHPAAKHGGREMVQLFEKGYGKDPAEIAFRAISHARDMHIDVVLID 513
AVEQL+ G R V + + G D A + + AI A+ IDVV+ D
Sbjct: 230 AVEQLQVW-------------GERNQVPVIAQHTGADSASVIYDAIEAAKARGIDVVIAD 276
Query: 514 TAGRMQDNEPLMRALAKLVKV------NQPDLLLFVGEALVGNEAVDQLVKFNN 561
TAGR+Q+ LM L K+V+V + P ++ +A G A+ Q F++
Sbjct: 277 TAGRLQNKSNLMEELRKIVRVMKKIDDSAPHEIMLTLDAGTGQNAISQAKLFSD 330
Score = 151 (58.2 bits), Expect = 1.5e-07, P = 1.5e-07
Identities = 49/160 (30%), Positives = 75/160 (46%)
Query: 475 GGREMVQLFEKGYGKDPAEIAFRAISHARDMHIDVVLIDTAGRMQDNEPLMRALAKLVKV 534
G R V + + G D A + + AI A+ IDVV+ DTAGR+Q+ LM L K+V+V
Sbjct: 238 GERNQVPVIAQHTGADSASVIYDAIEAAKARGIDVVIADTAGRLQNKSNLMEELRKIVRV 297
Query: 535 ------NQPDLLLFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTIDD 588
+ P ++ +A G A+ Q F++ P I GI LTK D
Sbjct: 298 MKKIDDSAPHEIMLTLDAGTGQNAISQAKLFSDVA--------P--ITGITLTKLDGTA- 346
Query: 589 KVGAAISMTYITGQPIVFVGTGQTYTDLKSLNAKAVVNAL 628
K G ++ PI ++G G+ DL+ + ++AL
Sbjct: 347 KGGVIFAIADQFQIPIRYIGVGEKIDDLRPFATQEFIDAL 386
>UNIPROTKB|P10121 [details] [associations]
symbol:ftsY "SRP receptor" species:83333 "Escherichia coli
K-12" [GO:0006184 "GTP catabolic process" evidence=IEA;IDA]
[GO:0005829 "cytosol" evidence=IDA] [GO:0031226 "intrinsic to
plasma membrane" evidence=IDA] [GO:0003924 "GTPase activity"
evidence=IDA] [GO:0006614 "SRP-dependent cotranslational protein
targeting to membrane" evidence=IEA;IDA] [GO:0005525 "GTP binding"
evidence=IEA;IDA] HAMAP:MF_00920 InterPro:IPR000897
InterPro:IPR003593 InterPro:IPR004390 InterPro:IPR013822
Pfam:PF00448 Pfam:PF02881 PROSITE:PS00300 SMART:SM00382
SMART:SM00962 SMART:SM00963 GO:GO:0005525 GO:GO:0005829 EMBL:U00039
EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0003924 GO:GO:0031226 EMBL:X04398
PIR:S03130 RefSeq:NP_417921.1 RefSeq:YP_491970.1 PDB:1FTS PDB:2QY9
PDB:2XXA PDB:2YHS PDBsum:1FTS PDBsum:2QY9 PDBsum:2XXA PDBsum:2YHS
ProteinModelPortal:P10121 SMR:P10121 DIP:DIP-9709N IntAct:P10121
MINT:MINT-1247716 TCDB:3.A.5.1.1 PRIDE:P10121
EnsemblBacteria:EBESCT00000004496 EnsemblBacteria:EBESCT00000016891
GeneID:12933505 GeneID:947978 KEGG:ecj:Y75_p3714 KEGG:eco:b3464
PATRIC:32122372 EchoBASE:EB0342 EcoGene:EG10346 eggNOG:COG0552
HOGENOM:HOG000036278 KO:K03110 OMA:AETNAEY ProtClustDB:PRK10416
BioCyc:EcoCyc:EG10346-MONOMER BioCyc:ECOL316407:JW3429-MONOMER
EvolutionaryTrace:P10121 Genevestigator:P10121 GO:GO:0006614
SUPFAM:SSF47364 TIGRFAMs:TIGR00064 Uniprot:P10121
Length = 497
Score = 226 (84.6 bits), Expect = 1.3e-15, P = 1.3e-15
Identities = 69/236 (29%), Positives = 115/236 (48%)
Query: 334 ILEKMKDHLIAKNVAADIAVKLCDSVALKLEGKVLGTFESVANTVKSTLTDALVQILSPK 393
+ E++++ L+ +V + K+ ++ K L E++ +K + + L ++ P
Sbjct: 227 LFEELEEQLLIADVGVETTRKIITNLTEGASRKQLRDAEALYGLLKEEMGEILAKVDEPL 286
Query: 394 RRVDILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAG 453
+E K PFV+ GVNGVGK+T + K+ + +V++AA DTFRA
Sbjct: 287 N--------VEGKA---PFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAA 335
Query: 454 AVEQLRTHVRHLCSLHPAAKHGGREMVQLFEKGYGKDPAEIAFRAISHARDMHIDVVLID 513
AVEQL+ G R + + + G D A + F AI A+ +IDV++ D
Sbjct: 336 AVEQLQVW-------------GQRNNIPVIAQHTGADSASVIFDAIQAAKARNIDVLIAD 382
Query: 514 TAGRMQDNEPLMRALAKLVKVNQ------PDLLLFVGEALVGNEAVDQLVKFNNAM 563
TAGR+Q+ LM L K+V+V + P ++ +A G AV Q F+ A+
Sbjct: 383 TAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKLFHEAV 438
Score = 168 (64.2 bits), Expect = 3.2e-09, P = 3.2e-09
Identities = 51/160 (31%), Positives = 76/160 (47%)
Query: 475 GGREMVQLFEKGYGKDPAEIAFRAISHARDMHIDVVLIDTAGRMQDNEPLMRALAKLVKV 534
G R + + + G D A + F AI A+ +IDV++ DTAGR+Q+ LM L K+V+V
Sbjct: 344 GQRNNIPVIAQHTGADSASVIFDAIQAAKARNIDVLIADTAGRLQNKSHLMEELKKIVRV 403
Query: 535 NQ------PDLLLFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTIDD 588
+ P ++ +A G AV Q F+ A+ + GI LTK D
Sbjct: 404 MKKLDVEAPHEVMLTIDASTGQNAVSQAKLFHEAVG----------LTGITLTKLDGTA- 452
Query: 589 KVGAAISMTYITGQPIVFVGTGQTYTDLKSLNAKAVVNAL 628
K G S+ G PI ++G G+ DL+ A + AL
Sbjct: 453 KGGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDFIEAL 492
>UNIPROTKB|O07347 [details] [associations]
symbol:ffh "Signal recognition particle protein"
species:271 "Thermus aquaticus" [GO:0005515 "protein binding"
evidence=IPI] HAMAP:MF_00306 InterPro:IPR000897 InterPro:IPR003593
InterPro:IPR004125 InterPro:IPR004780 InterPro:IPR013822
InterPro:IPR022941 Pfam:PF00448 Pfam:PF02881 Pfam:PF02978
PROSITE:PS00300 SMART:SM00382 SMART:SM00962 SMART:SM00963
GO:GO:0005525 GO:GO:0003924 GO:GO:0006184 GO:GO:0008312
GO:GO:0006614 SUPFAM:SSF47364 PDB:1OKK PDB:1RJ9 PDB:2CNW PDB:2J7P
PDB:2XKV PDBsum:1OKK PDBsum:1RJ9 PDBsum:2CNW PDBsum:2J7P
PDBsum:2XKV PDB:1RY1 PDBsum:1RY1 GO:GO:0005786 Gene3D:1.10.260.30
SUPFAM:SSF47446 PANTHER:PTHR11564:SF7 TIGRFAMs:TIGR00959
EMBL:U82109 PDB:1FFH PDB:1JPJ PDB:1JPN PDB:1LS1 PDB:1NG1 PDB:1O87
PDB:2C03 PDB:2C04 PDB:2FFH PDB:2IY3 PDB:2J45 PDB:2J46 PDB:2NG1
PDB:3NG1 PDBsum:1FFH PDBsum:1JPJ PDBsum:1JPN PDBsum:1LS1
PDBsum:1NG1 PDBsum:1O87 PDBsum:2C03 PDBsum:2C04 PDBsum:2FFH
PDBsum:2IY3 PDBsum:2J45 PDBsum:2J46 PDBsum:2NG1 PDBsum:3NG1
ProteinModelPortal:O07347 SMR:O07347 IntAct:O07347
EvolutionaryTrace:O07347 Uniprot:O07347
Length = 430
Score = 224 (83.9 bits), Expect = 1.4e-15, P = 1.4e-15
Identities = 68/194 (35%), Positives = 97/194 (50%)
Query: 418 GVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHPAAKHGGR 477
G+ G GK+T AK+ + L+ A DT R A EQLR G +
Sbjct: 105 GLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLL-------------GEK 151
Query: 478 EMVQLFEKGYGKDPAEIAFRAISHARDMHIDVVLIDTAGRMQDNEPLMRALAKLVKVNQP 537
V + E G+ P I R AR D++L+DTAGR+Q +EPLM LA+L +V P
Sbjct: 152 VGVPVLEVMDGESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVLGP 211
Query: 538 DLLLFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTIDDKVGAAISMT 597
D +L V +A+ G EA+ F+ + + G+VLTK D D + GAA+S
Sbjct: 212 DEVLLVLDAMTGQEALSVARAFDEKVG----------VTGLVLTKLDG-DARGGAALSAR 260
Query: 598 YITGQPIVFVGTGQ 611
++TG+PI F G +
Sbjct: 261 HVTGKPIYFAGVSE 274
>CGD|CAL0003314 [details] [associations]
symbol:SRP54 species:5476 "Candida albicans" [GO:0005783
"endoplasmic reticulum" evidence=IEA] [GO:0005786 "signal
recognition particle, endoplasmic reticulum targeting"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA] [GO:0005048
"signal sequence binding" evidence=IEA] [GO:0003924 "GTPase
activity" evidence=IEA] [GO:0008312 "7S RNA binding" evidence=IEA]
[GO:0006614 "SRP-dependent cotranslational protein targeting to
membrane" evidence=IEA] [GO:0006184 "GTP catabolic process"
evidence=IEA] HAMAP:MF_00306 InterPro:IPR000897 InterPro:IPR003593
InterPro:IPR004125 InterPro:IPR006325 InterPro:IPR013822
InterPro:IPR022941 Pfam:PF00448 Pfam:PF02881 Pfam:PF02978
PROSITE:PS00300 SMART:SM00382 SMART:SM00962 SMART:SM00963
CGD:CAL0003314 GO:GO:0005525 GO:GO:0003924 GO:GO:0006184
EMBL:AACQ01000049 EMBL:AACQ01000048 GO:GO:0008312 GO:GO:0006614
SUPFAM:SSF47364 KO:K03106 Gene3D:1.10.260.30 SUPFAM:SSF47446
TIGRFAMs:TIGR01425 GO:GO:0048500 RefSeq:XP_717868.1
RefSeq:XP_717934.1 ProteinModelPortal:Q5A885 STRING:Q5A885
GeneID:3640377 GeneID:3640507 KEGG:cal:CaO19.10753
KEGG:cal:CaO19.3243 Uniprot:Q5A885
Length = 556
Score = 220 (82.5 bits), Expect = 7.6e-15, P = 7.6e-15
Identities = 81/329 (24%), Positives = 140/329 (42%)
Query: 315 SLFRGLVGSKNLTKSD-MKPILEKMKDHLIAKNVAADIAVKLCDSVALKLEGKVLGTFES 373
S RG + S D ++ +++ + L+ +V + KL ++ K++ + S
Sbjct: 8 SRLRGALSSVESGSDDEIQQMIKDICSALLESDVNVKLVAKLRGNIKNKIDESNVSKETS 67
Query: 374 VANTVKST---LTDALVQILS-----PK-RRVDILRDALEAKK----QGRPFVMAFCGVN 420
N K + D L ++ PK +++ + KK + V+ F G+
Sbjct: 68 AMNKRKKLQKIIFDELCALVDSNVEPPKPKKLSTSTKTINGKKVRLSKESSHVIMFVGLQ 127
Query: 421 GVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHPAAKHGGREMV 480
G GK+T+ K+ + + V + DTFRAGA +QL+ + A K +
Sbjct: 128 GAGKTTSCTKLAVYYKKRGFKVGLVCADTFRAGAFDQLKQN---------AIKAN----I 174
Query: 481 QLFEKGYGKDPAEIAFRAISHARDMHIDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLL 540
+ DP +IAF + + D++++DT+GR + E L + ++ + QP
Sbjct: 175 PYYGSYLEPDPVKIAFEGVQKFKQEKFDIIIVDTSGRHRQEEQLFTEMVQIGEAVQPTQT 234
Query: 541 LFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTIDDKVGAAISMTYIT 600
+ V + +G A Q F S N I+LTK D K G AIS T
Sbjct: 235 IMVMDGSIGQAAESQARAFKE-------SSN---FGSIILTKMDG-HAKGGGAISAVAAT 283
Query: 601 GQPIVFVGTGQTYTDLKSLNAKAVVNALM 629
PIVF+GTG+ DL+ ++ L+
Sbjct: 284 KTPIVFIGTGEHVGDLEIFKPTTFISKLL 312
>TIGR_CMR|CBU_1903 [details] [associations]
symbol:CBU_1903 "signal recognition particle-docking
protein FtsY" species:227377 "Coxiella burnetii RSA 493"
[GO:0003924 "GTPase activity" evidence=ISS] [GO:0005047 "signal
recognition particle binding" evidence=ISS] [GO:0009306 "protein
secretion" evidence=ISS] HAMAP:MF_00920 InterPro:IPR000897
InterPro:IPR003593 InterPro:IPR004390 InterPro:IPR013822
Pfam:PF00448 Pfam:PF02881 PROSITE:PS00300 SMART:SM00382
SMART:SM00962 SMART:SM00963 GO:GO:0005525 GO:GO:0005737
GO:GO:0051301 GO:GO:0003924 EMBL:AE016828 GenomeReviews:AE016828_GR
GO:GO:0031226 HOGENOM:HOG000036278 KO:K03110 ProtClustDB:PRK10416
GO:GO:0006614 SUPFAM:SSF47364 TIGRFAMs:TIGR00064 OMA:NRIPDEL
RefSeq:NP_820880.1 HSSP:P10121 ProteinModelPortal:Q83AI3 SMR:Q83AI3
PRIDE:Q83AI3 GeneID:1209816 KEGG:cbu:CBU_1903 PATRIC:17932545
BioCyc:CBUR227377:GJ7S-1878-MONOMER Uniprot:Q83AI3
Length = 324
Score = 209 (78.6 bits), Expect = 1.8e-14, P = 1.8e-14
Identities = 75/245 (30%), Positives = 113/245 (46%)
Query: 322 GSKNLTKSDMKPILEKMKDHLIAKNVAADIAVKLCDSVALKLEGKVLGTFESVANTVKST 381
G NL K I + + L ++ADI ++ S+ L +V S +
Sbjct: 42 GLSNLVLGK-KTIDASLLEELEMILLSADIGIEATQSILNNLSQQVARKSLSDPKALIDA 100
Query: 382 LTDALVQILSPKRRVDILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLN 441
L L+ IL P ++ LE PFV+ GVNGVGK+T +AK+ +
Sbjct: 101 LKIELLNILEPCQK------HLEISAS--PFVILTVGVNGVGKTTTIAKLAHFYQSQKKR 152
Query: 442 VLIAACDTFRAGAVEQLRTHVRHLCSLHPAAKHGGREMVQLFEKGYGKDPAEIAFRAISH 501
V++AA DTFRA A+EQL+T G R + + G D A + + A+
Sbjct: 153 VMLAAGDTFRAAAIEQLQTW-------------GQRNNAPVIAQQPGADSASVIYDAMEA 199
Query: 502 ARDMHIDVVLIDTAGRMQDNEPLMRALAKLVKVNQ---PDL---LLFVGEALVGNEAVDQ 555
A H D+++ DTAGR+ LM LAK+ +V + PD L V +A G A++Q
Sbjct: 200 ATARHYDLLIADTAGRLHTQSHLMDELAKIKRVMKKINPDAPHETLLVLDAGTGQNAINQ 259
Query: 556 LVKFN 560
+F+
Sbjct: 260 AEQFH 264
Score = 156 (60.0 bits), Expect = 1.5e-08, Sum P(2) = 1.5e-08
Identities = 50/162 (30%), Positives = 75/162 (46%)
Query: 475 GGREMVQLFEKGYGKDPAEIAFRAISHARDMHIDVVLIDTAGRMQDNEPLMRALAKLVKV 534
G R + + G D A + + A+ A H D+++ DTAGR+ LM LAK+ +V
Sbjct: 173 GQRNNAPVIAQQPGADSASVIYDAMEAATARHYDLLIADTAGRLHTQSHLMDELAKIKRV 232
Query: 535 NQ---PDL---LLFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTIDD 588
+ PD L V +A G A++Q +F+ + + GI +TK D
Sbjct: 233 MKKINPDAPHETLLVLDAGTGQNAINQAEQFHEHIG----------LTGIAITKLDGTA- 281
Query: 589 KVGAAISMTYITGQPIVFVGTGQTYTDLKSLNAKAVVNALMK 630
K G ++ PI F+G G+ DLK NAK + AL K
Sbjct: 282 KGGVIFAIAKKMQLPIRFIGMGEKIEDLKPFNAKEFIAALFK 323
Score = 43 (20.2 bits), Expect = 1.5e-08, Sum P(2) = 1.5e-08
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 372 ESVANTVKSTLTDALVQILSPKRRVDI-LRDALE 404
ES+ T +S LTD L ++ K+ +D L + LE
Sbjct: 30 ESLKRT-RSRLTDGLSNLVLGKKTIDASLLEELE 62
>TIGR_CMR|SO_4586 [details] [associations]
symbol:SO_4586 "signal recognition particle-docking protein
FtsY" species:211586 "Shewanella oneidensis MR-1" [GO:0003924
"GTPase activity" evidence=ISS] [GO:0005047 "signal recognition
particle binding" evidence=ISS] [GO:0009306 "protein secretion"
evidence=ISS] HAMAP:MF_00920 InterPro:IPR000897 InterPro:IPR003593
InterPro:IPR004390 InterPro:IPR013822 Pfam:PF00448 Pfam:PF02881
PROSITE:PS00300 SMART:SM00382 SMART:SM00962 SMART:SM00963
GO:GO:0005525 GO:GO:0005737 GO:GO:0003924 EMBL:AE014299
GenomeReviews:AE014299_GR GO:GO:0031226 HOGENOM:HOG000036278
KO:K03110 GO:GO:0006614 SUPFAM:SSF47364 TIGRFAMs:TIGR00064
HSSP:P10121 RefSeq:NP_720102.1 ProteinModelPortal:Q8E8S5 SMR:Q8E8S5
GeneID:1172171 KEGG:son:SO_4586 PATRIC:23528839 OMA:PDNANGP
Uniprot:Q8E8S5
Length = 510
Score = 215 (80.7 bits), Expect = 2.2e-14, P = 2.2e-14
Identities = 73/251 (29%), Positives = 119/251 (47%)
Query: 319 GLVGSKNLTKSDMKPILEKMKDHLIAKNVAADIAVKLCDSVALKLEGKVLGTFESVANTV 378
G +G K D + + E++++ L+ +V + +L S+ K L E++ + +
Sbjct: 222 GFIGLFRGKKIDDE-LFEELEEQLLIADVGVETTGRLIKSLTEHASRKQLKDAEALYDLL 280
Query: 379 KSTLTDALVQILSPKRRVDILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIEN 438
+ D + + L P V I L + PFV+ GVNGVGK+T + K+
Sbjct: 281 R----DEMQKTLDP---VAI---PLVPENANGPFVILMVGVNGVGKTTTIGKLAKQYQRQ 330
Query: 439 NLNVLIAACDTFRAGAVEQLRTHVRHLCSLHPAAKHGGREMVQLFEKGYGKDPAEIAFRA 498
+V++AA DTFRA AVEQL+ G R + + + G D A + F A
Sbjct: 331 GKSVMLAAGDTFRAAAVEQLQVW-------------GQRNNIPVVAQHTGADSASVLFDA 377
Query: 499 ISHARDMHIDVVLIDTAGRMQDNEPLMRALAKLVKVNQ------PDLLLFVGEALVGNEA 552
+ A+ IDV++ DTAGR+Q+ LM L K+V+V + P ++ +A G A
Sbjct: 378 LQAAKARKIDVLIADTAGRLQNKSHLMEELKKVVRVMKKLDPEAPHEVMLTLDASTGQNA 437
Query: 553 VDQLVKFNNAM 563
+ Q F A+
Sbjct: 438 ISQAQLFQEAV 448
Score = 153 (58.9 bits), Expect = 1.5e-07, P = 1.5e-07
Identities = 44/160 (27%), Positives = 77/160 (48%)
Query: 475 GGREMVQLFEKGYGKDPAEIAFRAISHARDMHIDVVLIDTAGRMQDNEPLMRALAKLVKV 534
G R + + + G D A + F A+ A+ IDV++ DTAGR+Q+ LM L K+V+V
Sbjct: 354 GQRNNIPVVAQHTGADSASVLFDALQAAKARKIDVLIADTAGRLQNKSHLMEELKKVVRV 413
Query: 535 NQ------PDLLLFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTIDD 588
+ P ++ +A G A+ Q F A+ + G+ ++K D
Sbjct: 414 MKKLDPEAPHEVMLTLDASTGQNAISQAQLFQEAVG----------VTGMTISKLDGTA- 462
Query: 589 KVGAAISMTYITGQPIVFVGTGQTYTDLKSLNAKAVVNAL 628
K G ++ P+ ++G G+ DL++ N+K ++AL
Sbjct: 463 KGGVVFAIADKFKIPLRYIGVGEQIDDLRTFNSKEFIDAL 502
>TIGR_CMR|SPO_3246 [details] [associations]
symbol:SPO_3246 "signal recognition particle protein"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0003924 "GTPase
activity" evidence=ISS] [GO:0005048 "signal sequence binding"
evidence=ISS] [GO:0006617 "SRP-dependent cotranslational protein
targeting to membrane, signal sequence recognition" evidence=ISS]
[GO:0009306 "protein secretion" evidence=ISS] [GO:0048501 "signal
recognition particle, plasma membrane targeting" evidence=ISS]
HAMAP:MF_00306 InterPro:IPR000897 InterPro:IPR003593
InterPro:IPR004125 InterPro:IPR004780 InterPro:IPR013822
InterPro:IPR022941 Pfam:PF00448 Pfam:PF02881 Pfam:PF02978
PROSITE:PS00300 SMART:SM00382 SMART:SM00962 SMART:SM00963
GO:GO:0005525 EMBL:CP000031 GenomeReviews:CP000031_GR GO:GO:0003924
GO:GO:0006184 GO:GO:0008312 GO:GO:0006614 SUPFAM:SSF47364
GO:GO:0005786 KO:K03106 Gene3D:1.10.260.30 SUPFAM:SSF47446
HOGENOM:HOG000036164 PANTHER:PTHR11564:SF7 TIGRFAMs:TIGR00959
OMA:GQQVVKI ProtClustDB:PRK10867 RefSeq:YP_168449.1
ProteinModelPortal:Q5LNF9 GeneID:3195205 KEGG:sil:SPO3246
PATRIC:23379937 Uniprot:Q5LNF9
Length = 510
Score = 214 (80.4 bits), Expect = 2.9e-14, P = 2.9e-14
Identities = 82/285 (28%), Positives = 134/285 (47%)
Query: 349 ADIAVKLCDSVALKLEGKVLGTFESVANTVKSTLTDALVQILSPKRRVDILRDALEAKK- 407
AD+++ + ++ K G ++V +V T +V+I+ VD+LR A + K
Sbjct: 41 ADVSLPVARDFVKAVQDKATG--QAVTKSV--TPGQQVVKIVHDTL-VDVLRGAEDPGKL 95
Query: 408 --QGRPFVMAFCGVNGVGKSTNLAKICFWLIENN-LNVLIAACDTFRAGAVEQLRTHVRH 464
P + G+ G GK+T AK+ L E VL+A+ D +R A++QL
Sbjct: 96 KIDNPPAPILMVGLQGGGKTTTTAKLAKRLKEREGKKVLMASLDVYRPAAMDQL------ 149
Query: 465 LCSLHPAAKHGGREMVQLFEKGYGKDPAEIAFRAISHARDMHIDVVLIDTAGRMQDNEPL 524
A G + V G+ P +IA RA A DV ++DTAGR+ ++ L
Sbjct: 150 -------AVLGAQIGVDTLPIVPGQKPVDIAKRAKQQAMMGGYDVYMLDTAGRLHIDQVL 202
Query: 525 MRALAKLVKVNQPDLLLFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFD 584
M+ + + V P L V + L G AV+ +F+ + I G+VLT+ D
Sbjct: 203 MQEVEDVRNVVTPRETLLVVDGLTGQVAVEVAEEFDAKIG----------ISGVVLTRMD 252
Query: 585 TIDDKVGAAISMTYITGQPIVFVGTGQTYTDLKSLNAKAVVNALM 629
D + GAA+SM +TG+PI FVG G+ L++ + + ++
Sbjct: 253 G-DGRGGAALSMRAVTGKPIRFVGLGEKMDALETFEPERIAGRIL 296
>TAIR|locus:2157809 [details] [associations]
symbol:AT5G49500 "AT5G49500" species:3702 "Arabidopsis
thaliana" [GO:0003729 "mRNA binding" evidence=ISS] [GO:0005525 "GTP
binding" evidence=IEA;ISS] [GO:0005737 "cytoplasm" evidence=ISM]
[GO:0005786 "signal recognition particle, endoplasmic reticulum
targeting" evidence=ISS] [GO:0006614 "SRP-dependent cotranslational
protein targeting to membrane" evidence=IEA] [GO:0006617
"SRP-dependent cotranslational protein targeting to membrane,
signal sequence recognition" evidence=ISS] [GO:0008312 "7S RNA
binding" evidence=IEA;ISS] [GO:0048500 "signal recognition
particle" evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0010267 "production of ta-siRNAs involved in RNA interference"
evidence=RCA] [GO:0035196 "production of miRNAs involved in gene
silencing by miRNA" evidence=RCA] [GO:0051607 "defense response to
virus" evidence=RCA] InterPro:IPR000897 InterPro:IPR004125
InterPro:IPR006325 InterPro:IPR013822 InterPro:IPR022941
Pfam:PF00448 Pfam:PF02881 Pfam:PF02978 PROSITE:PS00300
SMART:SM00962 SMART:SM00963 GO:GO:0005525 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0003924 GO:GO:0006184 EMBL:AB023033
GO:GO:0008312 GO:GO:0006614 SUPFAM:SSF47364 GO:GO:0005786
eggNOG:COG0541 HOGENOM:HOG000036165 KO:K03106
ProtClustDB:CLSN2686827 Gene3D:1.10.260.30 SUPFAM:SSF47446
TIGRFAMs:TIGR01425 EMBL:U12126 IPI:IPI00534798 RefSeq:NP_199761.1
UniGene:At.29781 ProteinModelPortal:P49966 SMR:P49966 IntAct:P49966
STRING:P49966 PRIDE:P49966 GeneID:835010 KEGG:ath:AT5G49500
TAIR:At5g49500 InParanoid:P49966 Genevestigator:P49966
GermOnline:AT5G49500 Uniprot:P49966
Length = 497
Score = 210 (79.0 bits), Expect = 7.5e-14, P = 7.5e-14
Identities = 71/308 (23%), Positives = 141/308 (45%)
Query: 325 NLTKSDMKPILEKMKDHLIAKNVAADIAVKLCDSVALKLEGKVLGTFESVANTVKSTLTD 384
N+T D K + + + + + + +D++ L + ++ K++ + A K + +
Sbjct: 19 NVTIIDEKALNDCLNE-ITRALLQSDVSFPLVKEMQTNIK-KIVNLEDLAAGHNKRRIIE 76
Query: 385 -ALVQILSPKRRVDILRDALEAKKQGRPFVMAFCGVNG-VGKSTNLAKICFWLIENN-LN 441
A+ L + +D + A A K+ +P V+ F G+ G V + L +I
Sbjct: 77 QAIFSELC--KMLDPGKSAF-APKKAKPSVVMFVGLQGEVLEKPQLVPSMLIIIRRKGYK 133
Query: 442 VLIAACDTFRAGAVEQLRTHVRHLCSLHPAAKHGGREMVQLFEKGYGKDPAEIAFRAISH 501
+ DTFRAGA +QL+ + A K + + G DP +IA +
Sbjct: 134 PALVCADTFRAGAFDQLKQN---------ATK----SKIPYYGSYTGSDPVKIAVEGVDR 180
Query: 502 ARDMHIDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQLVKFNN 561
+ + D++++DT+GR + L + ++ + +PDL++FV ++ +G A +Q F
Sbjct: 181 FKKENCDLIIVDTSGRHKQQASLFEEMRQISEATKPDLVIFVMDSSIGQTAFEQARAFKQ 240
Query: 562 AMADHSLSDNPHLIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGTGQTYTDLKSLNA 621
+A + +++TK D K G +S T P++F+GTG+ + + +A
Sbjct: 241 TVA----------VGAVIITKMDG-HAKGGGTLSAVAATKSPVIFIGTGEHMDEFEVFDA 289
Query: 622 KAVVNALM 629
K V+ L+
Sbjct: 290 KPFVSRLL 297
>UNIPROTKB|E1C6G6 [details] [associations]
symbol:SRP54 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003924 "GTPase activity" evidence=IEA] [GO:0005525
"GTP binding" evidence=IEA] [GO:0006614 "SRP-dependent
cotranslational protein targeting to membrane" evidence=IEA]
[GO:0008312 "7S RNA binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0005786 "signal recognition particle, endoplasmic
reticulum targeting" evidence=IEA] [GO:0008144 "drug binding"
evidence=IEA] [GO:0019003 "GDP binding" evidence=IEA] [GO:0030942
"endoplasmic reticulum signal peptide binding" evidence=IEA]
[GO:0042493 "response to drug" evidence=IEA] [GO:0043021
"ribonucleoprotein complex binding" evidence=IEA] HAMAP:MF_00306
InterPro:IPR000897 InterPro:IPR003593 InterPro:IPR004125
InterPro:IPR006325 InterPro:IPR013822 InterPro:IPR022941
Pfam:PF00448 Pfam:PF02881 Pfam:PF02978 PROSITE:PS00300
SMART:SM00382 SMART:SM00962 SMART:SM00963 GO:GO:0005525
GO:GO:0005634 GO:GO:0042493 GO:GO:0008144 GO:GO:0003924
GO:GO:0043021 GO:GO:0019003 GO:GO:0008312 GO:GO:0006614
SUPFAM:SSF47364 GO:GO:0005786 KO:K03106 Gene3D:1.10.260.30
SUPFAM:SSF47446 TIGRFAMs:TIGR01425 GO:GO:0030942 CTD:6729
GeneTree:ENSGT00550000074824 OMA:GQQVVKI EMBL:AADN02003392
IPI:IPI00581279 RefSeq:XP_421238.1 ProteinModelPortal:E1C6G6
PRIDE:E1C6G6 Ensembl:ENSGALT00000016327 GeneID:423322
KEGG:gga:423322 NextBio:20825811 Uniprot:E1C6G6
Length = 504
Score = 207 (77.9 bits), Expect = 1.7e-13, P = 1.7e-13
Identities = 64/298 (21%), Positives = 134/298 (44%)
Query: 334 ILEKMKDHLIAKNVAADIAVKLCDSVALKLEGKVLGTFESVANTVKSTLTDALVQILSPK 393
+L M + + AD+ +KL + ++ + E +A+ + ++Q K
Sbjct: 27 VLNAMLKEVCTALLEADVNIKLVKQLRENVKSAI--DLEEMASGLNKR---KMIQHAVFK 81
Query: 394 RRVDILRDALEA--KKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFR 451
V ++ ++A +G+ ++ F G+ G GK+T +K+ ++ + DT+R
Sbjct: 82 ELVKLVDPGVKAWTPTKGKQNIIMFVGLQGSGKTTTCSKLAYFYQRKGWKTCLICADTYR 141
Query: 452 AGAVEQLRTHVRHLCSLHPAAKHGGREMVQLFEKGYGKDPAEIAFRAISHARDMHIDVVL 511
AGA +QL+ + A K + + DP IA + ++ + ++++
Sbjct: 142 AGAFDQLKQN---------ATK----ARIPFYGSYTEMDPVIIASEGVEKFKNENFEIII 188
Query: 512 IDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQLVKFNNAMADHSLSDN 571
+DT+GR + + L + ++ QPD +++V +A +G Q F + + D
Sbjct: 189 VDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEAQAKAFKDKV-D------ 241
Query: 572 PHLIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGTGQTYTDLKSLNAKAVVNALM 629
+ +++TK D K G A+S T PI+F+GTG+ D + + ++ L+
Sbjct: 242 ---VASVIVTKLDG-HAKGGGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLL 295
>UNIPROTKB|P66842 [details] [associations]
symbol:ftsY "Signal recognition particle receptor FtsY"
species:1773 "Mycobacterium tuberculosis" [GO:0005618 "cell wall"
evidence=IDA] [GO:0005886 "plasma membrane" evidence=IDA]
HAMAP:MF_00920 InterPro:IPR000897 InterPro:IPR003593
InterPro:IPR004390 InterPro:IPR013822 Pfam:PF00448 Pfam:PF02881
PROSITE:PS00300 SMART:SM00382 SMART:SM00962 SMART:SM00963
GO:GO:0005525 GO:GO:0005886 GO:GO:0005737 GO:GO:0005618
EMBL:AE000516 GenomeReviews:AE000516_GR GenomeReviews:AL123456_GR
GO:GO:0006184 EMBL:BX842581 GO:GO:0017111 eggNOG:COG0552
HOGENOM:HOG000036278 KO:K03110 ProtClustDB:PRK10416 GO:GO:0006614
SUPFAM:SSF47364 TIGRFAMs:TIGR00064 PIR:A70748 RefSeq:NP_217437.1
RefSeq:NP_337502.1 RefSeq:YP_006516374.1 ProteinModelPortal:P66842
SMR:P66842 TCDB:3.A.5.2.2 PhosSite:P12071727 PRIDE:P66842
EnsemblBacteria:EBMYCT00000000121 EnsemblBacteria:EBMYCT00000072194
GeneID:13317714 GeneID:887205 GeneID:925285 KEGG:mtc:MT2989
KEGG:mtu:Rv2921c KEGG:mtv:RVBD_2921c PATRIC:18128342
TubercuList:Rv2921c OMA:FIGIGEN Uniprot:P66842
Length = 422
Score = 205 (77.2 bits), Expect = 1.8e-13, P = 1.8e-13
Identities = 75/242 (30%), Positives = 112/242 (46%)
Query: 319 GLVGSKNLTKSDMKPILEKMKDHLIAKNVAADIAVKLCDSVALKLEGKVL-GTFESVANT 377
GL+G +L + + + +D L+ AD+ SV +L ++ G + A+
Sbjct: 143 GLIGGGDLDEDSWQDV----EDTLLV----ADLGPAATASVVSQLRSRLASGNVRTEADA 194
Query: 378 VKSTLTDALVQILSPKRRVDILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIE 437
++ L D L+ L P +D R G P V+ GVNG GK+T + K+ L+
Sbjct: 195 -RAVLRDVLINELQPG--MD--RSIRALPHAGHPSVLLVVGVNGTGKTTTVGKLARVLVA 249
Query: 438 NNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHPAAKHGGREMVQLFEKGYGKDPAEIAFR 497
+ V++ A DTFRA A +QL+T + AA G E G DPA +AF
Sbjct: 250 DGRRVVLGAADTFRAAAADQLQTWAARV----GAAVVRGPE---------GADPASVAFD 296
Query: 498 AISHARDMHIDVVLIDTAGRMQDNEPLMRALAKLVKV----NQPDLLLFVGEALVGNEAV 553
A+ DVVLIDTAGR+ LM L K+ +V D +L V +A +G +
Sbjct: 297 AVDKGIAAGADVVLIDTAGRLHTKVGLMDELDKVKRVVTRRASVDEVLLVLDATIGQNGL 356
Query: 554 DQ 555
Q
Sbjct: 357 AQ 358
Score = 138 (53.6 bits), Expect = 4.7e-06, P = 4.7e-06
Identities = 50/146 (34%), Positives = 65/146 (44%)
Query: 488 GKDPAEIAFRAISHARDMHIDVVLIDTAGRMQDNEPLMRALAKLVKV----NQPDLLLFV 543
G DPA +AF A+ DVVLIDTAGR+ LM L K+ +V D +L V
Sbjct: 287 GADPASVAFDAVDKGIAAGADVVLIDTAGRLHTKVGLMDELDKVKRVVTRRASVDEVLLV 346
Query: 544 GEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTIDDKVGAAISMTYITGQP 603
+A +G + Q F + D I G VLTK D K G + G P
Sbjct: 347 LDATIGQNGLAQARVFAEVV------D----ISGAVLTKLDGTA-KGGIVFRVQQELGVP 395
Query: 604 IVFVGTGQTYTDLKSLNAKAVVNALM 629
+ VG G+ DL A V+AL+
Sbjct: 396 VKLVGLGEGPDDLAPFEPAAFVDALL 421
>TIGR_CMR|NSE_0540 [details] [associations]
symbol:NSE_0540 "signal recognition particle protein"
species:222891 "Neorickettsia sennetsu str. Miyayama" [GO:0003924
"GTPase activity" evidence=ISS] [GO:0006617 "SRP-dependent
cotranslational protein targeting to membrane, signal sequence
recognition" evidence=ISS] [GO:0048501 "signal recognition
particle, plasma membrane targeting" evidence=ISS]
InterPro:IPR000897 InterPro:IPR003593 InterPro:IPR004125
InterPro:IPR004780 InterPro:IPR013822 Pfam:PF00448 Pfam:PF02881
Pfam:PF02978 SMART:SM00382 SMART:SM00962 SMART:SM00963
GO:GO:0005525 GO:GO:0003924 GO:GO:0006184 EMBL:CP000237
GenomeReviews:CP000237_GR GO:GO:0008312 GO:GO:0006614
SUPFAM:SSF47364 eggNOG:COG0541 KO:K03106 Gene3D:1.10.260.30
SUPFAM:SSF47446 HOGENOM:HOG000036164 PANTHER:PTHR11564:SF7
OMA:GQQVVKI ProtClustDB:PRK10867 GO:GO:0048500 RefSeq:YP_506423.1
ProteinModelPortal:Q2GDM3 STRING:Q2GDM3 GeneID:3931977
KEGG:nse:NSE_0540 PATRIC:22681129
BioCyc:NSEN222891:GHFU-559-MONOMER Uniprot:Q2GDM3
Length = 449
Score = 198 (74.8 bits), Expect = 1.3e-12, P = 1.3e-12
Identities = 83/308 (26%), Positives = 142/308 (46%)
Query: 334 ILEKMKDHLIAKN----VAADIAVKLCDSVALKLEGKVLGTFESVANTVKSTLTDALVQI 389
I EK D + K + AD+++ + + V+G + VK T A++
Sbjct: 22 ITEKEFDDFVRKLRLTFLEADVSLPVTKQFIANVRESVIGK-----SRVKGISTPAVIGS 76
Query: 390 LSPKRRVDIL---RDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNL--NVLI 444
+ + V IL E K G+ +M F G+ GVGK+T AK+ LI N+L+
Sbjct: 77 VVKEELVKILGGESQKFEFPKFGKQILM-FVGLQGVGKTTTAAKLAL-LIRKKFKKNILL 134
Query: 445 AACDTFRAGAVEQLRTHVRHLCSLHPAAKHGGREMVQLFEKGYGKDPAEIAFRAISHARD 504
++ D +R A +QL AK + V + E G+D I + + +
Sbjct: 135 SSVDIYRPAARKQLEI----------LAKQIDVDTVPIVE---GEDVDAIVKKTLDLFNN 181
Query: 505 MH--IDVVLIDTAGRMQDNEPLMRALAKLVKVN-QPDLLLFVGEALVGNEAVDQLVKFNN 561
H DV+++DTAGR Q + LM L K++K QP + V +A++G +++ N
Sbjct: 182 SHEGYDVLMVDTAGRSQIDSVLMEEL-KVIKNRLQPSEIFQVLDAMMGQDSL------NV 234
Query: 562 AMADHSLSDNPHLIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGTGQTYTDLKSLNA 621
A HS G+++++ D+ D +VG+ +S+ G PI F G G+ DL+ +
Sbjct: 235 ARTFHSEIGTT----GVIVSRLDS-DARVGSVLSVRQSVGLPIRFCGAGERVNDLEEFHP 289
Query: 622 KAVVNALM 629
+ + +M
Sbjct: 290 ERMAGRIM 297
>TIGR_CMR|GSU_1132 [details] [associations]
symbol:GSU_1132 "signal recognition particle-docking
protein FtsY" species:243231 "Geobacter sulfurreducens PCA"
[GO:0003924 "GTPase activity" evidence=ISS] [GO:0005047 "signal
recognition particle binding" evidence=ISS] [GO:0009306 "protein
secretion" evidence=ISS] HAMAP:MF_00920 InterPro:IPR000897
InterPro:IPR003593 InterPro:IPR004390 InterPro:IPR013822
Pfam:PF00448 Pfam:PF02881 PROSITE:PS00300 SMART:SM00382
SMART:SM00962 SMART:SM00963 GO:GO:0005525 GO:GO:0005737
GO:GO:0003924 EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0031226
HOGENOM:HOG000036278 KO:K03110 ProtClustDB:PRK10416 GO:GO:0006614
SUPFAM:SSF47364 TIGRFAMs:TIGR00064 RefSeq:NP_952185.1
ProteinModelPortal:Q74E32 SMR:Q74E32 GeneID:2686843
KEGG:gsu:GSU1132 PATRIC:22025026 OMA:HLMAELE
BioCyc:GSUL243231:GH27-1142-MONOMER Uniprot:Q74E32
Length = 350
Score = 188 (71.2 bits), Expect = 8.0e-12, P = 8.0e-12
Identities = 67/235 (28%), Positives = 102/235 (43%)
Query: 335 LEKMKDHLIAKNVAADIAVKLCDSVALKLEGKVLGTFESVANTVKSTLTDALVQILSPKR 394
LE++++ LI ++ V+L + +L L E++ +K + L
Sbjct: 84 LEELEEILITADLGVQTTVELIRGLEQRLSRNELKDGEALREALKEDIHGRLA------- 136
Query: 395 RVDILRDALEAKKQGR-PFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAG 453
RDA + G PFV+ GVNGVGK+T + K+ V++AA DTFRA
Sbjct: 137 -----RDAHQLDVTGASPFVIMVIGVNGVGKTTTIGKLAARFTAQGKKVILAAGDTFRAA 191
Query: 454 AVEQLRTHVRHLCSLHPAAKHGGREMVQLFEKGYGKDPAEIAFRAISHARDMHIDVVLID 513
A EQL+ G R V + G DP+ + F +I A D++++D
Sbjct: 192 AAEQLQIW-------------GERTGVDVIRHKEGADPSAVVFDSIKAAVARGADILIVD 238
Query: 514 TAGRMQDNEPLMRALAKLVKV------NQPDLLLFVGEALVGNEAVDQLVKFNNA 562
TAGR+ LM L K+ ++ P L V +A G A+ Q F A
Sbjct: 239 TAGRLHTKVNLMEELKKVRRIMSREIPGAPHETLLVLDAATGQNALSQAKLFKEA 293
Score = 134 (52.2 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 41/156 (26%), Positives = 70/156 (44%)
Query: 475 GGREMVQLFEKGYGKDPAEIAFRAISHARDMHIDVVLIDTAGRMQDNEPLMRALAKLVKV 534
G R V + G DP+ + F +I A D++++DTAGR+ LM L K+ ++
Sbjct: 200 GERTGVDVIRHKEGADPSAVVFDSIKAAVARGADILIVDTAGRLHTKVNLMEELKKVRRI 259
Query: 535 NQPDLLLFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTIDDKVGAAI 594
++ E L+ +A NA++ L + GI LTK D K G +
Sbjct: 260 MSREIPGAPHETLLVLDAATG----QNALSQAKLFKEAAQVTGIALTKLDGTA-KGGIVV 314
Query: 595 SMTYITGQPIVFVGTGQTYTDLKSLNAKAVVNALMK 630
++ P+ ++G G+ DL+ + V AL +
Sbjct: 315 AICNEFRIPVRYIGVGEGIDDLRDFDPSQFVEALFQ 350
Score = 40 (19.1 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 16/54 (29%), Positives = 30/54 (55%)
Query: 354 KLCDSVALKLEGKVLGTFESVANTVKSTLTDALVQI-LSPKRRVDILRDALEAK 406
K DS+ +++ VLG E A+T++ L + L+ L + V+++R LE +
Sbjct: 60 KTRDSLVGRIDRLVLGKKEIDADTLEE-LEEILITADLGVQTTVELIR-GLEQR 111
>DICTYBASE|DDB_G0275455 [details] [associations]
symbol:srp54 "signal recognition particle 54 kDa
subunit" species:44689 "Dictyostelium discoideum" [GO:0045335
"phagocytic vesicle" evidence=IDA] [GO:0048500 "signal recognition
particle" evidence=IEA] [GO:0017111 "nucleoside-triphosphatase
activity" evidence=IEA] [GO:0008312 "7S RNA binding" evidence=IEA]
[GO:0006614 "SRP-dependent cotranslational protein targeting to
membrane" evidence=IEA] [GO:0006184 "GTP catabolic process"
evidence=IEA] [GO:0005525 "GTP binding" evidence=IEA] [GO:0003924
"GTPase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0005786 "signal recognition particle, endoplasmic reticulum
targeting" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000897
InterPro:IPR003593 InterPro:IPR004125 InterPro:IPR006325
InterPro:IPR013822 InterPro:IPR022941 Pfam:PF00448 Pfam:PF02881
Pfam:PF02978 PROSITE:PS00300 SMART:SM00382 SMART:SM00962
SMART:SM00963 dictyBase:DDB_G0275455 GO:GO:0005525 GO:GO:0045335
GO:GO:0003924 GO:GO:0006184 GenomeReviews:CM000151_GR
EMBL:AAFI02000013 GO:GO:0008312 GO:GO:0006614 SUPFAM:SSF47364
GO:GO:0005786 eggNOG:COG0541 KO:K03106 Gene3D:1.10.260.30
SUPFAM:SSF47446 TIGRFAMs:TIGR01425 OMA:GQQVVKI RefSeq:XP_643640.1
HSSP:P61011 ProteinModelPortal:Q75K18 STRING:Q75K18
EnsemblProtists:DDB0232373 GeneID:8620227 KEGG:ddi:DDB_G0275455
Uniprot:Q75K18
Length = 542
Score = 192 (72.6 bits), Expect = 8.7e-12, P = 8.7e-12
Identities = 52/249 (20%), Positives = 120/249 (48%)
Query: 315 SLFRGLVGSKNLTKSDMKPILEKMKDHLIAKNVAADIAVKLCDSVALKLEGKVLGTFESV 374
S R L + + + + +L+++ + L +V+ + +++ ++ K++ + +
Sbjct: 12 SALRSLNETTIVNEDTINQLLKEVGNALSKSDVSMSLIIQMRKNIKDKIKLDQMAAGLNK 71
Query: 375 ANTVKSTLTDALVQILSPKRRVDILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFW 434
+K + D L+++L P V + + +G+ ++ F G+ G GK+T++ K+ ++
Sbjct: 72 RKIIKQVVFDELIRLLDPG--VPLWKPT-----KGKSNIVMFVGLQGAGKTTSVTKLAYF 124
Query: 435 LIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHPAAKHGGREMVQLFEKGYGKDPAEI 494
+ + I DTFRAGA +Q+R H AAK + + KDP +
Sbjct: 125 YKKKGFSTAIVCADTFRAGAFDQVR---------HNAAK----AKIHYYGSETEKDPVVV 171
Query: 495 AFRAISHARDMHIDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVD 554
A + + +++++DT+GR + + L + ++ +PD +FV ++ +G A +
Sbjct: 172 ARTGVDIFKKDGTEIIIVDTSGRHKQDSELFEEMKQIETAVKPDNCIFVMDSSIGQAAYE 231
Query: 555 QLVKFNNAM 563
Q F +++
Sbjct: 232 QATAFRSSV 240
Score = 158 (60.7 bits), Expect = 4.7e-08, P = 4.7e-08
Identities = 37/141 (26%), Positives = 71/141 (50%)
Query: 489 KDPAEIAFRAISHARDMHIDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALV 548
KDP +A + + +++++DT+GR + + L + ++ +PD +FV ++ +
Sbjct: 166 KDPVVVARTGVDIFKKDGTEIIIVDTSGRHKQDSELFEEMKQIETAVKPDNCIFVMDSSI 225
Query: 549 GNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVG 608
G A +Q F +++ + I++TK D + G AIS T PI+F+G
Sbjct: 226 GQAAYEQATAFRSSVK----------VGSIIITKMDG-NSMGGGAISAVAATNTPIIFIG 274
Query: 609 TGQTYTDLKSLNAKAVVNALM 629
TG+ TDL+ + V+ L+
Sbjct: 275 TGEHLTDLELFDPSTFVSKLL 295
>UNIPROTKB|Q97QH0 [details] [associations]
symbol:ftsY "Signal recognition particle receptor FtsY"
species:170187 "Streptococcus pneumoniae TIGR4" [GO:0005515
"protein binding" evidence=IPI] HAMAP:MF_00920 InterPro:IPR000897
InterPro:IPR003593 InterPro:IPR004390 InterPro:IPR013822
Pfam:PF00448 Pfam:PF02881 PROSITE:PS00300 SMART:SM00382
SMART:SM00962 SMART:SM00963 GO:GO:0005525 GO:GO:0005737
GO:GO:0003924 EMBL:AE005672 GenomeReviews:AE005672_GR GO:GO:0031226
HOGENOM:HOG000036278 KO:K03110 ProtClustDB:PRK10416 GO:GO:0006614
SUPFAM:SSF47364 TIGRFAMs:TIGR00064 HSSP:P83749 PIR:D95144
RefSeq:NP_345709.1 ProteinModelPortal:Q97QH0
EnsemblBacteria:EBSTRT00000026851 GeneID:931757 KEGG:spn:SP_1244
PATRIC:19706881 OMA:DEGKSVI Uniprot:Q97QH0
Length = 429
Score = 189 (71.6 bits), Expect = 1.1e-11, P = 1.1e-11
Identities = 59/199 (29%), Positives = 99/199 (49%)
Query: 336 EKMKDHLIAKNVAADIAVKLCDSVALKLEGKVLGTFESVANTVKSTLTDALVQILSPKRR 395
E++++ LI +V +A L + L+ E K+ + + ++ + + LV++
Sbjct: 159 EELEELLIMSDVGVQVASNLTEE--LRYEAKLENAKKP--DVLRRVIIEKLVELYEKDGS 214
Query: 396 VDILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAV 455
D +++ Q VM F GVNGVGK+T++ K+ + V++ A DTFRAGAV
Sbjct: 215 YD---ESIHF--QDNLTVMLFVGVNGVGKTTSIGKLAHRYKQAGKKVMLVAADTFRAGAV 269
Query: 456 EQLRTHVRHLCSLHPAAKHGGREMVQLFEKGYGKDPAEIAFRAISHARDMHIDVVLIDTA 515
QL A+ G R V + DPA + F + A ID+++IDTA
Sbjct: 270 AQL-------------AEWGRRVDVPVVTGPEKADPASVVFDGMERAVTEGIDILMIDTA 316
Query: 516 GRMQDNEPLMRALAKLVKV 534
GR+Q+ + LM L K+ ++
Sbjct: 317 GRLQNKDNLMAELEKIGRI 335
Score = 125 (49.1 bits), Expect = 0.00013, P = 0.00013
Identities = 39/147 (26%), Positives = 68/147 (46%)
Query: 490 DPAEIAFRAISHARDMHIDVVLIDTAGRMQDNEPLMRALAKLVKV------NQPDLLLFV 543
DPA + F + A ID+++IDTAGR+Q+ + LM L K+ ++ P
Sbjct: 291 DPASVVFDGMERAVTEGIDILMIDTAGRLQNKDNLMAELEKIGRIIKRVVPEAPHETFLA 350
Query: 544 GEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTIDDKVGAAISMTYITGQP 603
+A G A+ Q +F+ P + GIVLTK D + G +++ P
Sbjct: 351 LDASTGQNALVQAKEFSKI--------TP--LTGIVLTKIDGTA-RGGVVLAIREELNIP 399
Query: 604 IVFVGTGQTYTDLKSLNAKAVVNALMK 630
+ +G G+ D+ N++ + L++
Sbjct: 400 VKLIGFGEKIDDIGEFNSENFMKGLLE 426
>POMBASE|SPCC188.06c [details] [associations]
symbol:srp54 "signal recognition particle subunit Srp54"
species:4896 "Schizosaccharomyces pombe" [GO:0003924 "GTPase
activity" evidence=IMP] [GO:0005525 "GTP binding" evidence=IEA]
[GO:0005783 "endoplasmic reticulum" evidence=IDA] [GO:0005786
"signal recognition particle, endoplasmic reticulum targeting"
evidence=IDA] [GO:0005829 "cytosol" evidence=IDA] [GO:0006614
"SRP-dependent cotranslational protein targeting to membrane"
evidence=IMP] [GO:0008312 "7S RNA binding" evidence=IMP]
InterPro:IPR000897 InterPro:IPR003593 InterPro:IPR004125
InterPro:IPR006325 InterPro:IPR013822 InterPro:IPR022941
Pfam:PF00448 Pfam:PF02881 Pfam:PF02978 PROSITE:PS00300
SMART:SM00382 SMART:SM00962 SMART:SM00963 PomBase:SPCC188.06c
GO:GO:0005525 GO:GO:0005783 GO:GO:0005829 EMBL:CU329672
GenomeReviews:CU329672_GR GO:GO:0003924 GO:GO:0008312 GO:GO:0006614
SUPFAM:SSF47364 GO:GO:0005786 eggNOG:COG0541 HOGENOM:HOG000036165
KO:K03106 Gene3D:1.10.260.30 SUPFAM:SSF47446 TIGRFAMs:TIGR01425
OMA:GQQVVKI EMBL:X51613 EMBL:M55518 PIR:A33644 RefSeq:NP_588209.1
ProteinModelPortal:P21565 MINT:MINT-4687605 STRING:P21565
PRIDE:P21565 EnsemblFungi:SPCC188.06c.1 GeneID:2539290
KEGG:spo:SPCC188.06c OrthoDB:EOG4TMV9N NextBio:20800457
Uniprot:P21565
Length = 522
Score = 187 (70.9 bits), Expect = 2.9e-11, P = 2.9e-11
Identities = 67/239 (28%), Positives = 107/239 (44%)
Query: 336 EKMKDHLIAKNVAA-----DIAVKLCDSVALKLEGKV-LGTFESVAN---TVKSTLTDAL 386
E++ D L+ KN+ D+ V+L + ++ K+ + T N V+ + D L
Sbjct: 25 EELVDTLL-KNICTALLETDVNVRLVQELRSNIKKKINVSTLPQGINGKRIVQKAVFDEL 83
Query: 387 VQILSPKRRVDILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAA 446
++ PK DA KK GRP V+ G+ G GK+T +K+ L + A
Sbjct: 84 CSLVDPKV------DAFTPKK-GRPSVIMMVGLQGSGKTTTCSKLALHYQRRGLKSCLVA 136
Query: 447 CDTFRAGAVEQLRTHVRHLCSLHPAAKHGGREMVQLFEKGYGKDPAEIAFRAISHARDMH 506
DTFRAGA +QL+ + A K R V F DP IA + ++
Sbjct: 137 ADTFRAGAFDQLKQN---------AIK--AR--VPYFGSYTETDPVVIAKEGVDKFKNDR 183
Query: 507 IDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQLVKFNNAMAD 565
DV+++DT+GR Q + L + ++ +PD + + +A +G A Q F AD
Sbjct: 184 FDVIIVDTSGRHQQEQELFAEMVEISDAIRPDQTIMILDASIGQAAESQSKAFKET-AD 241
Score = 156 (60.0 bits), Expect = 7.3e-08, P = 7.3e-08
Identities = 39/140 (27%), Positives = 68/140 (48%)
Query: 490 DPAEIAFRAISHARDMHIDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVG 549
DP IA + ++ DV+++DT+GR Q + L + ++ +PD + + +A +G
Sbjct: 167 DPVVIAKEGVDKFKNDRFDVIIVDTSGRHQQEQELFAEMVEISDAIRPDQTIMILDASIG 226
Query: 550 NEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGT 609
A Q F AD +++TK D K G A+S T PIVF+GT
Sbjct: 227 QAAESQSKAFKET-ADFG---------AVIITKLDG-HAKGGGALSAVAATKTPIVFIGT 275
Query: 610 GQTYTDLKSLNAKAVVNALM 629
G+ DL+ + ++ ++ L+
Sbjct: 276 GEHINDLERFSPRSFISKLL 295
>ZFIN|ZDB-GENE-040426-818 [details] [associations]
symbol:srp54 "signal recognition particle 54"
species:7955 "Danio rerio" [GO:0017111 "nucleoside-triphosphatase
activity" evidence=IEA] [GO:0048500 "signal recognition particle"
evidence=IEA] [GO:0003924 "GTPase activity" evidence=IEA]
[GO:0005525 "GTP binding" evidence=IEA] [GO:0006614 "SRP-dependent
cotranslational protein targeting to membrane" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0008312 "7S RNA
binding" evidence=IEA] HAMAP:MF_00306 InterPro:IPR000897
InterPro:IPR003593 InterPro:IPR004125 InterPro:IPR006325
InterPro:IPR013822 InterPro:IPR022941 Pfam:PF00448 Pfam:PF02881
Pfam:PF02978 PROSITE:PS00300 SMART:SM00382 SMART:SM00962
SMART:SM00963 ZFIN:ZDB-GENE-040426-818 GO:GO:0005525 GO:GO:0003924
GO:GO:0006184 GO:GO:0008312 GO:GO:0006614 SUPFAM:SSF47364
eggNOG:COG0541 HOGENOM:HOG000036165 KO:K03106 Gene3D:1.10.260.30
SUPFAM:SSF47446 TIGRFAMs:TIGR01425 CTD:6729
GeneTree:ENSGT00550000074824 HOVERGEN:HBG061072 OMA:GQQVVKI
OrthoDB:EOG45MN54 GO:GO:0048500 HSSP:P70722 EMBL:BX088587
EMBL:BC045474 EMBL:BC067588 IPI:IPI00483938 RefSeq:NP_957282.1
UniGene:Dr.7990 SMR:Q7ZVN5 STRING:Q7ZVN5 Ensembl:ENSDART00000018678
Ensembl:ENSDART00000133424 GeneID:393963 KEGG:dre:393963
InParanoid:Q7ZVN5 NextBio:20814934 Uniprot:Q7ZVN5
Length = 504
Score = 162 (62.1 bits), Expect = 1.5e-08, P = 1.5e-08
Identities = 51/230 (22%), Positives = 104/230 (45%)
Query: 334 ILEKMKDHLIAKNVAADIAVKLCDSVALKLEGKVLGTFESVANTVKSTLTDALVQILSPK 393
+L M + A + AD+ +KL + ++ + E +A+ + ++Q K
Sbjct: 27 VLNAMLKEVCAALLEADVNIKLVKQLRENVKAAI--DLEEMASGLNKR---RMIQHAVFK 81
Query: 394 RRVDILRDALEA--KKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFR 451
V ++ ++A +G+ V+ F G+ G GK+T +K+ ++ + DTFR
Sbjct: 82 ELVKLVDPGVKAWTPTKGKNNVIMFVGLQGSGKTTTCSKLAYYFQRKGWKTCLICADTFR 141
Query: 452 AGAVEQLRTHVRHLCSLHPAAKHGGREMVQLFEKGYGKDPAEIAFRAISHARDMHIDVVL 511
AGA +QL+ + A K R + + DP IA + + + ++++
Sbjct: 142 AGAFDQLKQN---------ATK--AR--IPFYGSYTEMDPVIIAAEGVEKFKSENFEIII 188
Query: 512 IDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQLVKFNN 561
+DT+GR + + L + ++ QPD +++V +A +G Q F +
Sbjct: 189 VDTSGRHKQEDSLFEEMLQVSNAVQPDNIVYVMDASIGQACEAQAKAFKD 238
Score = 143 (55.4 bits), Expect = 1.8e-06, P = 1.8e-06
Identities = 34/140 (24%), Positives = 68/140 (48%)
Query: 490 DPAEIAFRAISHARDMHIDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVG 549
DP IA + + + +++++DT+GR + + L + ++ QPD +++V +A +G
Sbjct: 167 DPVIIAAEGVEKFKSENFEIIIVDTSGRHKQEDSLFEEMLQVSNAVQPDNIVYVMDASIG 226
Query: 550 NEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGT 609
Q F + + D + +++TK D K G A+S T PI+F+GT
Sbjct: 227 QACEAQAKAFKDKV------D----VASVIVTKLDG-HAKGGGALSAVAATKSPIIFIGT 275
Query: 610 GQTYTDLKSLNAKAVVNALM 629
G+ D + + ++ L+
Sbjct: 276 GEHIDDFEPFKTQPFISKLL 295
>RGD|2323636 [details] [associations]
symbol:Fam177a1 "family with sequence similarity 177, member A1"
species:10116 "Rattus norvegicus" [GO:0003924 "GTPase activity"
evidence=IEA] [GO:0005525 "GTP binding" evidence=IEA] [GO:0006614
"SRP-dependent cotranslational protein targeting to membrane"
evidence=IEA] [GO:0008312 "7S RNA binding" evidence=IEA]
[GO:0048500 "signal recognition particle" evidence=IEA]
HAMAP:MF_00306 InterPro:IPR000897 InterPro:IPR003593
InterPro:IPR004125 InterPro:IPR006325 InterPro:IPR013822
InterPro:IPR022941 Pfam:PF00448 Pfam:PF02881 Pfam:PF02978
PROSITE:PS00300 SMART:SM00382 SMART:SM00962 SMART:SM00963
RGD:2323636 GO:GO:0005525 GO:GO:0003924 GO:GO:0006184 GO:GO:0008312
GO:GO:0006614 SUPFAM:SSF47364 GO:GO:0005786 Gene3D:1.10.260.30
SUPFAM:SSF47446 TIGRFAMs:TIGR01425 GeneTree:ENSGT00550000074824
IPI:IPI00387699 PRIDE:F1M7P5 Ensembl:ENSRNOT00000052076
ArrayExpress:F1M7P5 Uniprot:F1M7P5
Length = 500
Score = 158 (60.7 bits), Expect = 7.4e-08, Sum P(2) = 7.4e-08
Identities = 50/230 (21%), Positives = 104/230 (45%)
Query: 334 ILEKMKDHLIAKNVAADIAVKLCDSVALKLEGKVLGTFESVANTVKSTLTDALVQILSPK 393
+L M + + AD+ +KL + ++ + E +A+ + ++Q K
Sbjct: 27 VLNAMLKEVCTALLEADVNIKLVKQLRENVKSAI--DLEEMASGLNKR---KMIQHAVFK 81
Query: 394 RRVDILRDALEA--KKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFR 451
V ++ ++A +G+ V+ F G+ G GK+T +K+ ++ + DTFR
Sbjct: 82 ELVKLVDPGVKAWTPTKGKQNVIMFVGLQGSGKTTTCSKLAYFYQRKGWKTCLICADTFR 141
Query: 452 AGAVEQLRTHVRHLCSLHPAAKHGGREMVQLFEKGYGKDPAEIAFRAISHARDMHIDVVL 511
AGA +QL+ + A K R + + DP IA + ++ + ++++
Sbjct: 142 AGAFDQLKQN---------ATK--AR--IPFYGSYTEMDPVIIASEGVEKFKNENFEIII 188
Query: 512 IDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQLVKFNN 561
+DT+GR + + L + ++ QPD +++V +A +G Q F +
Sbjct: 189 VDTSGRHKQEDSLFEEMLQVSNAIQPDNIVYVMDASIGQACEAQAKAFKD 238
Score = 144 (55.7 bits), Expect = 1.4e-06, P = 1.4e-06
Identities = 34/140 (24%), Positives = 69/140 (49%)
Query: 490 DPAEIAFRAISHARDMHIDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVG 549
DP IA + ++ + +++++DT+GR + + L + ++ QPD +++V +A +G
Sbjct: 167 DPVIIASEGVEKFKNENFEIIIVDTSGRHKQEDSLFEEMLQVSNAIQPDNIVYVMDASIG 226
Query: 550 NEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGT 609
Q F + + D + +++TK D K G A+S T PI+F+GT
Sbjct: 227 QACEAQAKAFKDKV------D----VASVIVTKLDG-HAKGGGALSAVAATKSPIIFIGT 275
Query: 610 GQTYTDLKSLNAKAVVNALM 629
G+ D + + ++ L+
Sbjct: 276 GEHIDDFEPFKTQPFISKLL 295
Score = 42 (19.8 bits), Expect = 7.4e-08, Sum P(2) = 7.4e-08
Identities = 14/57 (24%), Positives = 28/57 (49%)
Query: 541 LFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTIDDKVGAAISMT 597
LF G + N + Q+ K N MA + D P ++ +V D + +K+ + + ++
Sbjct: 440 LFKGGDMSKNVSQSQMAKLNQQMA--KMMD-PRVLHHMVC---DFLGEKIASVLGIS 490
>UNIPROTKB|G3V4F7 [details] [associations]
symbol:SRP54 "Signal recognition particle 54 kDa protein"
species:9606 "Homo sapiens" [GO:0003924 "GTPase activity"
evidence=IEA] [GO:0005525 "GTP binding" evidence=IEA] [GO:0006614
"SRP-dependent cotranslational protein targeting to membrane"
evidence=IEA] [GO:0008312 "7S RNA binding" evidence=IEA]
[GO:0048500 "signal recognition particle" evidence=IEA]
InterPro:IPR000897 InterPro:IPR003593 InterPro:IPR004125
InterPro:IPR006325 Pfam:PF00448 Pfam:PF02978 PROSITE:PS00300
SMART:SM00382 SMART:SM00962 GO:GO:0005525 GO:GO:0003924
GO:GO:0006184 GO:GO:0008312 GO:GO:0006614 Gene3D:1.10.260.30
SUPFAM:SSF47446 TIGRFAMs:TIGR01425 GO:GO:0048500 EMBL:AL049776
HGNC:HGNC:11301 ChiTaRS:SRP54 ProteinModelPortal:G3V4F7 SMR:G3V4F7
Ensembl:ENST00000555557 ArrayExpress:G3V4F7 Bgee:G3V4F7
Uniprot:G3V4F7
Length = 440
Score = 153 (58.9 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 38/154 (24%), Positives = 74/154 (48%)
Query: 408 QGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCS 467
+G+ V+ F G+ G GK+T +K+ ++ + DTFRAGA +QL+ +
Sbjct: 34 KGKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQN------ 87
Query: 468 LHPAAKHGGREMVQLFEKGYGKDPAEIAFRAISHARDMHIDVVLIDTAGRMQDNEPLMRA 527
A K R + + DP IA + ++ + +++++DT+GR + + L
Sbjct: 88 ---ATK--AR--IPFYGSYTEMDPVIIASEGVEKFKNENFEIIIVDTSGRHKQEDSLFEE 140
Query: 528 LAKLVKVNQPDLLLFVGEALVGNEAVDQLVKFNN 561
+ ++ QPD +++V +A +G Q F +
Sbjct: 141 MLQVANAIQPDNIVYVMDASIGQACEAQAKAFKD 174
Score = 146 (56.5 bits), Expect = 6.8e-07, P = 6.8e-07
Identities = 34/140 (24%), Positives = 69/140 (49%)
Query: 490 DPAEIAFRAISHARDMHIDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVG 549
DP IA + ++ + +++++DT+GR + + L + ++ QPD +++V +A +G
Sbjct: 103 DPVIIASEGVEKFKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIG 162
Query: 550 NEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGT 609
Q F + + D + +++TK D K G A+S T PI+F+GT
Sbjct: 163 QACEAQAKAFKDKV------D----VASVIVTKLDG-HAKGGGALSAVAATKSPIIFIGT 211
Query: 610 GQTYTDLKSLNAKAVVNALM 629
G+ D + + ++ L+
Sbjct: 212 GEHIDDFEPFKTQPFISKLL 231
>UNIPROTKB|Q2T9U1 [details] [associations]
symbol:SRP54 "Signal recognition particle 54 kDa protein"
species:9913 "Bos taurus" [GO:0042493 "response to drug"
evidence=ISS] [GO:0045047 "protein targeting to ER" evidence=ISS]
[GO:0003924 "GTPase activity" evidence=ISS] [GO:0005525 "GTP
binding" evidence=ISS] [GO:0008144 "drug binding" evidence=ISS]
[GO:0008312 "7S RNA binding" evidence=ISS] [GO:0019003 "GDP
binding" evidence=ISS] [GO:0030942 "endoplasmic reticulum signal
peptide binding" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005786 "signal recognition particle, endoplasmic reticulum
targeting" evidence=ISS] [GO:0043021 "ribonucleoprotein complex
binding" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0006614 "SRP-dependent cotranslational protein targeting to
membrane" evidence=IEA] InterPro:IPR000897 InterPro:IPR003593
InterPro:IPR004125 InterPro:IPR006325 InterPro:IPR013822
InterPro:IPR022941 Pfam:PF00448 Pfam:PF02881 Pfam:PF02978
PROSITE:PS00300 SMART:SM00382 SMART:SM00962 SMART:SM00963
GO:GO:0005525 GO:GO:0005634 GO:GO:0042493 GO:GO:0008144
GO:GO:0003924 GO:GO:0043021 GO:GO:0019003 GO:GO:0008312
GO:GO:0006614 SUPFAM:SSF47364 GO:GO:0045047 GO:GO:0005786
eggNOG:COG0541 HOGENOM:HOG000036165 KO:K03106 Gene3D:1.10.260.30
SUPFAM:SSF47446 TIGRFAMs:TIGR01425 GO:GO:0030942 EMBL:BC111270
IPI:IPI00698247 RefSeq:NP_001033290.1 UniGene:Bt.36654 HSSP:Q6MTB9
ProteinModelPortal:Q2T9U1 SMR:Q2T9U1 STRING:Q2T9U1 PRIDE:Q2T9U1
Ensembl:ENSBTAT00000025405 GeneID:614017 KEGG:bta:614017 CTD:6729
GeneTree:ENSGT00550000074824 HOVERGEN:HBG061072 InParanoid:Q2T9U1
OMA:GQQVVKI OrthoDB:EOG45MN54 NextBio:20898897 Uniprot:Q2T9U1
Length = 504
Score = 161 (61.7 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
Identities = 50/230 (21%), Positives = 104/230 (45%)
Query: 334 ILEKMKDHLIAKNVAADIAVKLCDSVALKLEGKVLGTFESVANTVKSTLTDALVQILSPK 393
+L M + + AD+ +KL + ++ + E +A+ + ++Q K
Sbjct: 27 VLNAMLKEVCTALLEADVNIKLVKQLRENVKSAI--DLEEMASGLNKR---KMIQHAVFK 81
Query: 394 RRVDILRDALEA--KKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFR 451
V ++ ++A +G+ V+ F G+ G GK+T +K+ ++ + DTFR
Sbjct: 82 ELVKLVDPGVKAWTPTKGKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFR 141
Query: 452 AGAVEQLRTHVRHLCSLHPAAKHGGREMVQLFEKGYGKDPAEIAFRAISHARDMHIDVVL 511
AGA +QL+ + A K R + + DP IA + ++ + ++++
Sbjct: 142 AGAFDQLKQN---------ATK--AR--IPFYGSYTEMDPVIIASEGVEKFKNENFEIII 188
Query: 512 IDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQLVKFNN 561
+DT+GR + + L + ++ QPD +++V +A +G Q F +
Sbjct: 189 VDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEAQAKAFKD 238
Score = 146 (56.5 bits), Expect = 8.6e-07, P = 8.6e-07
Identities = 34/140 (24%), Positives = 69/140 (49%)
Query: 490 DPAEIAFRAISHARDMHIDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVG 549
DP IA + ++ + +++++DT+GR + + L + ++ QPD +++V +A +G
Sbjct: 167 DPVIIASEGVEKFKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIG 226
Query: 550 NEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGT 609
Q F + + D + +++TK D K G A+S T PI+F+GT
Sbjct: 227 QACEAQAKAFKDKV------D----VASVIVTKLDG-HAKGGGALSAVAATKSPIIFIGT 275
Query: 610 GQTYTDLKSLNAKAVVNALM 629
G+ D + + ++ L+
Sbjct: 276 GEHIDDFEPFKTQPFISKLL 295
Score = 37 (18.1 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
Identities = 9/24 (37%), Positives = 12/24 (50%)
Query: 541 LFVGEALVGNEAVDQLVKFNNAMA 564
LF G + N + Q+ K N MA
Sbjct: 440 LFKGGDMSKNVSQSQMAKLNQQMA 463
>UNIPROTKB|P61010 [details] [associations]
symbol:SRP54 "Signal recognition particle 54 kDa protein"
species:9615 "Canis lupus familiaris" [GO:0005829 "cytosol"
evidence=TAS] [GO:0030942 "endoplasmic reticulum signal peptide
binding" evidence=ISS;IMP] [GO:0042493 "response to drug"
evidence=ISS] [GO:0045047 "protein targeting to ER"
evidence=ISS;IMP] [GO:0003924 "GTPase activity" evidence=ISS]
[GO:0005525 "GTP binding" evidence=ISS] [GO:0008144 "drug binding"
evidence=ISS] [GO:0008312 "7S RNA binding" evidence=ISS]
[GO:0019003 "GDP binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0005786 "signal recognition particle, endoplasmic
reticulum targeting" evidence=ISS] [GO:0006616 "SRP-dependent
cotranslational protein targeting to membrane, translocation"
evidence=IDA] [GO:0006617 "SRP-dependent cotranslational protein
targeting to membrane, signal sequence recognition" evidence=IMP]
[GO:0043021 "ribonucleoprotein complex binding" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] Reactome:REACT_86357
InterPro:IPR000897 InterPro:IPR003593 InterPro:IPR004125
InterPro:IPR006325 InterPro:IPR013822 InterPro:IPR022941
Pfam:PF00448 Pfam:PF02881 Pfam:PF02978 PROSITE:PS00300
SMART:SM00382 SMART:SM00962 SMART:SM00963 GO:GO:0005525
GO:GO:0005829 GO:GO:0005634 GO:GO:0042493 GO:GO:0008144
GO:GO:0003924 GO:GO:0043021 GO:GO:0019003 GO:GO:0008312
SUPFAM:SSF47364 GO:GO:0006616 GO:GO:0005786 GO:GO:0006617
eggNOG:COG0541 HOGENOM:HOG000036165 KO:K03106 Gene3D:1.10.260.30
SUPFAM:SSF47446 TIGRFAMs:TIGR01425 Reactome:REACT_146484
GO:GO:0030942 PDB:2J37 PDBsum:2J37 CTD:6729
GeneTree:ENSGT00550000074824 HOVERGEN:HBG061072 OMA:GQQVVKI
OrthoDB:EOG45MN54 EMBL:X16318 PIR:S05197 RefSeq:NP_001003272.1
UniGene:Cfa.3810 PDB:2GO5 PDBsum:2GO5 ProteinModelPortal:P61010
SMR:P61010 STRING:P61010 PRIDE:P61010 Ensembl:ENSCAFT00000021158
GeneID:403953 KEGG:cfa:403953 InParanoid:P61010
EvolutionaryTrace:P61010 NextBio:20817443 Uniprot:P61010
Length = 504
Score = 161 (61.7 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
Identities = 50/230 (21%), Positives = 104/230 (45%)
Query: 334 ILEKMKDHLIAKNVAADIAVKLCDSVALKLEGKVLGTFESVANTVKSTLTDALVQILSPK 393
+L M + + AD+ +KL + ++ + E +A+ + ++Q K
Sbjct: 27 VLNAMLKEVCTALLEADVNIKLVKQLRENVKSAI--DLEEMASGLNKR---KMIQHAVFK 81
Query: 394 RRVDILRDALEA--KKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFR 451
V ++ ++A +G+ V+ F G+ G GK+T +K+ ++ + DTFR
Sbjct: 82 ELVKLVDPGVKAWTPTKGKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFR 141
Query: 452 AGAVEQLRTHVRHLCSLHPAAKHGGREMVQLFEKGYGKDPAEIAFRAISHARDMHIDVVL 511
AGA +QL+ + A K R + + DP IA + ++ + ++++
Sbjct: 142 AGAFDQLKQN---------ATK--AR--IPFYGSYTEMDPVIIASEGVEKFKNENFEIII 188
Query: 512 IDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQLVKFNN 561
+DT+GR + + L + ++ QPD +++V +A +G Q F +
Sbjct: 189 VDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEAQAKAFKD 238
Score = 146 (56.5 bits), Expect = 8.6e-07, P = 8.6e-07
Identities = 34/140 (24%), Positives = 69/140 (49%)
Query: 490 DPAEIAFRAISHARDMHIDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVG 549
DP IA + ++ + +++++DT+GR + + L + ++ QPD +++V +A +G
Sbjct: 167 DPVIIASEGVEKFKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIG 226
Query: 550 NEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGT 609
Q F + + D + +++TK D K G A+S T PI+F+GT
Sbjct: 227 QACEAQAKAFKDKV------D----VASVIVTKLDG-HAKGGGALSAVAATKSPIIFIGT 275
Query: 610 GQTYTDLKSLNAKAVVNALM 629
G+ D + + ++ L+
Sbjct: 276 GEHIDDFEPFKTQPFISKLL 295
Score = 37 (18.1 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
Identities = 9/24 (37%), Positives = 12/24 (50%)
Query: 541 LFVGEALVGNEAVDQLVKFNNAMA 564
LF G + N + Q+ K N MA
Sbjct: 440 LFKGGDMSKNVSQSQMAKLNQQMA 463
>UNIPROTKB|P61011 [details] [associations]
symbol:SRP54 "Signal recognition particle 54 kDa protein"
species:9606 "Homo sapiens" [GO:0016607 "nuclear speck"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0008144 "drug
binding" evidence=IDA] [GO:0006617 "SRP-dependent cotranslational
protein targeting to membrane, signal sequence recognition"
evidence=ISS] [GO:0030942 "endoplasmic reticulum signal peptide
binding" evidence=IDA] [GO:0008312 "7S RNA binding" evidence=IDA]
[GO:0006616 "SRP-dependent cotranslational protein targeting to
membrane, translocation" evidence=ISS] [GO:0005525 "GTP binding"
evidence=IDA] [GO:0019003 "GDP binding" evidence=IDA] [GO:0003924
"GTPase activity" evidence=IDA] [GO:0005786 "signal recognition
particle, endoplasmic reticulum targeting" evidence=IDA]
[GO:0042493 "response to drug" evidence=IDA] [GO:0045047 "protein
targeting to ER" evidence=IMP] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0006614
"SRP-dependent cotranslational protein targeting to membrane"
evidence=IC;TAS] [GO:0043021 "ribonucleoprotein complex binding"
evidence=IDA] [GO:0005829 "cytosol" evidence=TAS] [GO:0006412
"translation" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0044267 "cellular protein metabolic process"
evidence=TAS] [GO:0006184 "GTP catabolic process" evidence=IDA]
Reactome:REACT_71 Reactome:REACT_17015 InterPro:IPR000897
InterPro:IPR003593 InterPro:IPR004125 InterPro:IPR006325
InterPro:IPR013822 InterPro:IPR022941 Pfam:PF00448 Pfam:PF02881
Pfam:PF02978 PROSITE:PS00300 SMART:SM00382 SMART:SM00962
SMART:SM00963 GO:GO:0005525 GO:GO:0005829 GO:GO:0005730
GO:GO:0042493 GO:GO:0006412 GO:GO:0016607 GO:GO:0008144
GO:GO:0003924 GO:GO:0006184 GO:GO:0043021 GO:GO:0019003
TCDB:3.A.5.9.1 GO:GO:0008312 SUPFAM:SSF47364 GO:GO:0006616
GO:GO:0005786 GO:GO:0006617 eggNOG:COG0541 HOGENOM:HOG000036165
KO:K03106 Gene3D:1.10.260.30 SUPFAM:SSF47446 TIGRFAMs:TIGR01425
GO:GO:0030942 PDB:1MFQ PDBsum:1MFQ CTD:6729 HOVERGEN:HBG061072
OMA:GQQVVKI OrthoDB:EOG45MN54 EMBL:X86373 EMBL:U51920 EMBL:AK300824
EMBL:AK312853 EMBL:AL049776 EMBL:BC000652 EMBL:BC003389
IPI:IPI00009822 IPI:IPI00929464 PIR:S54143 RefSeq:NP_001139754.1
RefSeq:NP_003127.1 UniGene:Hs.167535 PDB:1QB2 PDBsum:1QB2
ProteinModelPortal:P61011 SMR:P61011 IntAct:P61011 STRING:P61011
PhosphoSite:P61011 DMDM:46577650 PaxDb:P61011 PRIDE:P61011
DNASU:6729 Ensembl:ENST00000216774 Ensembl:ENST00000546080
Ensembl:ENST00000556994 GeneID:6729 KEGG:hsa:6729 UCSC:uc001wso.3
GeneCards:GC14P035452 HGNC:HGNC:11301 HPA:HPA048977 MIM:604857
neXtProt:NX_P61011 PharmGKB:PA36125 InParanoid:P61011
PhylomeDB:P61011 ChiTaRS:SRP54 EvolutionaryTrace:P61011
GenomeRNAi:6729 NextBio:26248 ArrayExpress:P61011 Bgee:P61011
CleanEx:HS_SRP54 Genevestigator:P61011 GermOnline:ENSG00000100883
Uniprot:P61011
Length = 504
Score = 161 (61.7 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
Identities = 50/230 (21%), Positives = 104/230 (45%)
Query: 334 ILEKMKDHLIAKNVAADIAVKLCDSVALKLEGKVLGTFESVANTVKSTLTDALVQILSPK 393
+L M + + AD+ +KL + ++ + E +A+ + ++Q K
Sbjct: 27 VLNAMLKEVCTALLEADVNIKLVKQLRENVKSAI--DLEEMASGLNKR---KMIQHAVFK 81
Query: 394 RRVDILRDALEA--KKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFR 451
V ++ ++A +G+ V+ F G+ G GK+T +K+ ++ + DTFR
Sbjct: 82 ELVKLVDPGVKAWTPTKGKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFR 141
Query: 452 AGAVEQLRTHVRHLCSLHPAAKHGGREMVQLFEKGYGKDPAEIAFRAISHARDMHIDVVL 511
AGA +QL+ + A K R + + DP IA + ++ + ++++
Sbjct: 142 AGAFDQLKQN---------ATK--AR--IPFYGSYTEMDPVIIASEGVEKFKNENFEIII 188
Query: 512 IDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQLVKFNN 561
+DT+GR + + L + ++ QPD +++V +A +G Q F +
Sbjct: 189 VDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEAQAKAFKD 238
Score = 146 (56.5 bits), Expect = 8.6e-07, P = 8.6e-07
Identities = 34/140 (24%), Positives = 69/140 (49%)
Query: 490 DPAEIAFRAISHARDMHIDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVG 549
DP IA + ++ + +++++DT+GR + + L + ++ QPD +++V +A +G
Sbjct: 167 DPVIIASEGVEKFKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIG 226
Query: 550 NEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGT 609
Q F + + D + +++TK D K G A+S T PI+F+GT
Sbjct: 227 QACEAQAKAFKDKV------D----VASVIVTKLDG-HAKGGGALSAVAATKSPIIFIGT 275
Query: 610 GQTYTDLKSLNAKAVVNALM 629
G+ D + + ++ L+
Sbjct: 276 GEHIDDFEPFKTQPFISKLL 295
Score = 37 (18.1 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
Identities = 9/24 (37%), Positives = 12/24 (50%)
Query: 541 LFVGEALVGNEAVDQLVKFNNAMA 564
LF G + N + Q+ K N MA
Sbjct: 440 LFKGGDMSKNVSQSQMAKLNQQMA 463
>UNIPROTKB|F2Z5M9 [details] [associations]
symbol:SRP54 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0043021 "ribonucleoprotein complex binding"
evidence=IEA] [GO:0042493 "response to drug" evidence=IEA]
[GO:0030942 "endoplasmic reticulum signal peptide binding"
evidence=IEA] [GO:0019003 "GDP binding" evidence=IEA] [GO:0008144
"drug binding" evidence=IEA] [GO:0005786 "signal recognition
particle, endoplasmic reticulum targeting" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0008312 "7S RNA binding"
evidence=IEA] [GO:0006614 "SRP-dependent cotranslational protein
targeting to membrane" evidence=IEA] [GO:0005525 "GTP binding"
evidence=IEA] [GO:0003924 "GTPase activity" evidence=IEA]
HAMAP:MF_00306 InterPro:IPR000897 InterPro:IPR003593
InterPro:IPR004125 InterPro:IPR006325 InterPro:IPR013822
InterPro:IPR022941 Pfam:PF00448 Pfam:PF02881 Pfam:PF02978
PROSITE:PS00300 SMART:SM00382 SMART:SM00962 SMART:SM00963
GO:GO:0005525 GO:GO:0005634 GO:GO:0042493 GO:GO:0008144
GO:GO:0003924 GO:GO:0043021 GO:GO:0019003 GO:GO:0008312
GO:GO:0006614 SUPFAM:SSF47364 GO:GO:0005786 KO:K03106
Gene3D:1.10.260.30 SUPFAM:SSF47446 TIGRFAMs:TIGR01425 GO:GO:0030942
CTD:6729 GeneTree:ENSGT00550000074824 OMA:GQQVVKI EMBL:CU469145
RefSeq:XP_001927834.3 ProteinModelPortal:F2Z5M9 SMR:F2Z5M9
PRIDE:F2Z5M9 Ensembl:ENSSSCT00000002187 GeneID:100154361
KEGG:ssc:100154361 Uniprot:F2Z5M9
Length = 504
Score = 161 (61.7 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
Identities = 50/230 (21%), Positives = 104/230 (45%)
Query: 334 ILEKMKDHLIAKNVAADIAVKLCDSVALKLEGKVLGTFESVANTVKSTLTDALVQILSPK 393
+L M + + AD+ +KL + ++ + E +A+ + ++Q K
Sbjct: 27 VLNAMLKEVCTALLEADVNIKLVKQLRENVKSAI--DLEEMASGLNKR---KMIQHAVFK 81
Query: 394 RRVDILRDALEA--KKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFR 451
V ++ ++A +G+ V+ F G+ G GK+T +K+ ++ + DTFR
Sbjct: 82 ELVKLVDPGVKAWTPTKGKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFR 141
Query: 452 AGAVEQLRTHVRHLCSLHPAAKHGGREMVQLFEKGYGKDPAEIAFRAISHARDMHIDVVL 511
AGA +QL+ + A K R + + DP IA + ++ + ++++
Sbjct: 142 AGAFDQLKQN---------ATK--AR--IPFYGSYTEMDPVIIASEGVEKFKNENFEIII 188
Query: 512 IDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQLVKFNN 561
+DT+GR + + L + ++ QPD +++V +A +G Q F +
Sbjct: 189 VDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEAQAKAFKD 238
Score = 146 (56.5 bits), Expect = 8.6e-07, P = 8.6e-07
Identities = 34/140 (24%), Positives = 69/140 (49%)
Query: 490 DPAEIAFRAISHARDMHIDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVG 549
DP IA + ++ + +++++DT+GR + + L + ++ QPD +++V +A +G
Sbjct: 167 DPVIIASEGVEKFKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIG 226
Query: 550 NEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGT 609
Q F + + D + +++TK D K G A+S T PI+F+GT
Sbjct: 227 QACEAQAKAFKDKV------D----VASVIVTKLDG-HAKGGGALSAVAATKSPIIFIGT 275
Query: 610 GQTYTDLKSLNAKAVVNALM 629
G+ D + + ++ L+
Sbjct: 276 GEHIDDFEPFKTQPFISKLL 295
Score = 37 (18.1 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
Identities = 9/24 (37%), Positives = 12/24 (50%)
Query: 541 LFVGEALVGNEAVDQLVKFNNAMA 564
LF G + N + Q+ K N MA
Sbjct: 440 LFKGGDMSKNVSQSQMAKLNQQMA 463
>UNIPROTKB|Q4R965 [details] [associations]
symbol:SRP54 "Signal recognition particle 54 kDa protein"
species:9541 "Macaca fascicularis" [GO:0005525 "GTP binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005786
"signal recognition particle, endoplasmic reticulum targeting"
evidence=ISS] [GO:0006184 "GTP catabolic process" evidence=ISS]
[GO:0008144 "drug binding" evidence=ISS] [GO:0008312 "7S RNA
binding" evidence=ISS] [GO:0019003 "GDP binding" evidence=ISS]
[GO:0030942 "endoplasmic reticulum signal peptide binding"
evidence=ISS] [GO:0042493 "response to drug" evidence=ISS]
[GO:0045047 "protein targeting to ER" evidence=ISS] [GO:0003924
"GTPase activity" evidence=ISS] InterPro:IPR000897
InterPro:IPR003593 InterPro:IPR004125 InterPro:IPR006325
InterPro:IPR013822 InterPro:IPR022941 Pfam:PF00448 Pfam:PF02881
Pfam:PF02978 PROSITE:PS00300 SMART:SM00382 SMART:SM00962
SMART:SM00963 GO:GO:0005525 GO:GO:0005634 GO:GO:0042493
GO:GO:0016607 GO:GO:0008144 GO:GO:0003924 GO:GO:0006184
GO:GO:0019003 GO:GO:0008312 GO:GO:0006614 SUPFAM:SSF47364
GO:GO:0045047 GO:GO:0005786 Gene3D:1.10.260.30 SUPFAM:SSF47446
TIGRFAMs:TIGR01425 GO:GO:0030942 HOVERGEN:HBG061072 EMBL:AB168231
ProteinModelPortal:Q4R965 SMR:Q4R965 PRIDE:Q4R965 Uniprot:Q4R965
Length = 504
Score = 161 (61.7 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
Identities = 50/230 (21%), Positives = 104/230 (45%)
Query: 334 ILEKMKDHLIAKNVAADIAVKLCDSVALKLEGKVLGTFESVANTVKSTLTDALVQILSPK 393
+L M + + AD+ +KL + ++ + E +A+ + ++Q K
Sbjct: 27 VLNAMLKEVCTALLEADVNIKLVKQLRENVKSAI--DLEEMASGLNKR---KMIQHAVFK 81
Query: 394 RRVDILRDALEA--KKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFR 451
V ++ ++A +G+ V+ F G+ G GK+T +K+ ++ + DTFR
Sbjct: 82 ELVKLVDPGVKAWTPTKGKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFR 141
Query: 452 AGAVEQLRTHVRHLCSLHPAAKHGGREMVQLFEKGYGKDPAEIAFRAISHARDMHIDVVL 511
AGA +QL+ + A K R + + DP IA + ++ + ++++
Sbjct: 142 AGAFDQLKQN---------ATK--AR--IPFYGSYTEMDPVIIASEGVEKFKNENFEIII 188
Query: 512 IDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQLVKFNN 561
+DT+GR + + L + ++ QPD +++V +A +G Q F +
Sbjct: 189 VDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEAQAKAFKD 238
Score = 146 (56.5 bits), Expect = 8.6e-07, P = 8.6e-07
Identities = 34/140 (24%), Positives = 69/140 (49%)
Query: 490 DPAEIAFRAISHARDMHIDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVG 549
DP IA + ++ + +++++DT+GR + + L + ++ QPD +++V +A +G
Sbjct: 167 DPVIIASEGVEKFKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIG 226
Query: 550 NEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGT 609
Q F + + D + +++TK D K G A+S T PI+F+GT
Sbjct: 227 QACEAQAKAFKDKV------D----VASVIVTKLDG-HAKGGGALSAVAATKSPIIFIGT 275
Query: 610 GQTYTDLKSLNAKAVVNALM 629
G+ D + + ++ L+
Sbjct: 276 GEHIDDFEPFKTQPFISKLL 295
Score = 37 (18.1 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
Identities = 9/24 (37%), Positives = 12/24 (50%)
Query: 541 LFVGEALVGNEAVDQLVKFNNAMA 564
LF G + N + Q+ K N MA
Sbjct: 440 LFKGGDMSKNVSQSQMAKLNQQMA 463
>UNIPROTKB|Q5R4R6 [details] [associations]
symbol:SRP54 "Signal recognition particle 54 kDa protein"
species:9601 "Pongo abelii" [GO:0005525 "GTP binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0005786 "signal recognition
particle, endoplasmic reticulum targeting" evidence=ISS]
[GO:0006184 "GTP catabolic process" evidence=ISS] [GO:0008144 "drug
binding" evidence=ISS] [GO:0008312 "7S RNA binding" evidence=ISS]
[GO:0019003 "GDP binding" evidence=ISS] [GO:0030942 "endoplasmic
reticulum signal peptide binding" evidence=ISS] [GO:0042493
"response to drug" evidence=ISS] [GO:0045047 "protein targeting to
ER" evidence=ISS] [GO:0003924 "GTPase activity" evidence=ISS]
InterPro:IPR000897 InterPro:IPR003593 InterPro:IPR004125
InterPro:IPR006325 InterPro:IPR013822 InterPro:IPR022941
Pfam:PF00448 Pfam:PF02881 Pfam:PF02978 PROSITE:PS00300
SMART:SM00382 SMART:SM00962 SMART:SM00963 GO:GO:0005525
GO:GO:0005634 GO:GO:0042493 GO:GO:0016607 GO:GO:0008144
GO:GO:0003924 GO:GO:0006184 GO:GO:0019003 GO:GO:0008312
GO:GO:0006614 SUPFAM:SSF47364 GO:GO:0045047 GO:GO:0005786 KO:K03106
Gene3D:1.10.260.30 SUPFAM:SSF47446 TIGRFAMs:TIGR01425 GO:GO:0030942
CTD:6729 HOVERGEN:HBG061072 EMBL:CR861178 RefSeq:NP_001126912.1
UniGene:Pab.3814 ProteinModelPortal:Q5R4R6 SMR:Q5R4R6 PRIDE:Q5R4R6
GeneID:100173929 KEGG:pon:100173929 InParanoid:Q5R4R6
Uniprot:Q5R4R6
Length = 504
Score = 161 (61.7 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
Identities = 50/230 (21%), Positives = 104/230 (45%)
Query: 334 ILEKMKDHLIAKNVAADIAVKLCDSVALKLEGKVLGTFESVANTVKSTLTDALVQILSPK 393
+L M + + AD+ +KL + ++ + E +A+ + ++Q K
Sbjct: 27 VLNAMLKEVCTALLEADVNIKLVKQLRENVKSAI--DLEEMASGLNKR---KMIQHAVFK 81
Query: 394 RRVDILRDALEA--KKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFR 451
V ++ ++A +G+ V+ F G+ G GK+T +K+ ++ + DTFR
Sbjct: 82 ELVKLVDPGVKAWTPTKGKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFR 141
Query: 452 AGAVEQLRTHVRHLCSLHPAAKHGGREMVQLFEKGYGKDPAEIAFRAISHARDMHIDVVL 511
AGA +QL+ + A K R + + DP IA + ++ + ++++
Sbjct: 142 AGAFDQLKQN---------ATK--AR--IPFYGSYTEMDPVIIASEGVEKFKNENFEIII 188
Query: 512 IDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQLVKFNN 561
+DT+GR + + L + ++ QPD +++V +A +G Q F +
Sbjct: 189 VDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEAQAKAFKD 238
Score = 146 (56.5 bits), Expect = 8.6e-07, P = 8.6e-07
Identities = 34/140 (24%), Positives = 69/140 (49%)
Query: 490 DPAEIAFRAISHARDMHIDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVG 549
DP IA + ++ + +++++DT+GR + + L + ++ QPD +++V +A +G
Sbjct: 167 DPVIIASEGVEKFKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIG 226
Query: 550 NEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGT 609
Q F + + D + +++TK D K G A+S T PI+F+GT
Sbjct: 227 QACEAQAKAFKDKV------D----VASVIVTKLDG-HAKGGGALSAVAATKSPIIFIGT 275
Query: 610 GQTYTDLKSLNAKAVVNALM 629
G+ D + + ++ L+
Sbjct: 276 GEHIDDFEPFKTQPFISKLL 295
Score = 37 (18.1 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
Identities = 9/24 (37%), Positives = 12/24 (50%)
Query: 541 LFVGEALVGNEAVDQLVKFNNAMA 564
LF G + N + Q+ K N MA
Sbjct: 440 LFKGGDMSKNVSQSQMAKLNQQMA 463
>RGD|621390 [details] [associations]
symbol:Srp54 "signal recognition particle 54A" species:10116
"Rattus norvegicus" [GO:0003674 "molecular_function" evidence=ND]
[GO:0003924 "GTPase activity" evidence=IEA;ISO] [GO:0005525 "GTP
binding" evidence=IEA;ISO] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005730 "nucleolus" evidence=IEA;ISO] [GO:0005737 "cytoplasm"
evidence=ISO] [GO:0005786 "signal recognition particle, endoplasmic
reticulum targeting" evidence=IEA;ISO] [GO:0006184 "GTP catabolic
process" evidence=ISO] [GO:0006614 "SRP-dependent cotranslational
protein targeting to membrane" evidence=IEA] [GO:0008144 "drug
binding" evidence=IEA;ISO] [GO:0008150 "biological_process"
evidence=ND] [GO:0008312 "7S RNA binding" evidence=IEA;ISO]
[GO:0016607 "nuclear speck" evidence=IEA] [GO:0019003 "GDP binding"
evidence=IEA;ISO] [GO:0030942 "endoplasmic reticulum signal peptide
binding" evidence=IEA;ISO] [GO:0042493 "response to drug"
evidence=IEA;ISO] [GO:0043021 "ribonucleoprotein complex binding"
evidence=IEA;ISO] [GO:0045047 "protein targeting to ER"
evidence=ISO] InterPro:IPR000897 InterPro:IPR003593
InterPro:IPR004125 InterPro:IPR006325 InterPro:IPR013822
InterPro:IPR022941 Pfam:PF00448 Pfam:PF02881 Pfam:PF02978
PROSITE:PS00300 SMART:SM00382 SMART:SM00962 SMART:SM00963
RGD:621390 GO:GO:0005525 GO:GO:0042493 GO:GO:0016607 GO:GO:0008144
GO:GO:0003924 GO:GO:0043021 GO:GO:0019003 GO:GO:0008312
GO:GO:0006614 SUPFAM:SSF47364 GO:GO:0005786 eggNOG:COG0541
HOGENOM:HOG000036165 KO:K03106 Gene3D:1.10.260.30 SUPFAM:SSF47446
TIGRFAMs:TIGR01425 GO:GO:0030942 CTD:6729 HOVERGEN:HBG061072
OMA:GQQVVKI EMBL:BC079117 IPI:IPI00391089 RefSeq:NP_446323.1
UniGene:Rn.24880 ProteinModelPortal:Q6AYB5 SMR:Q6AYB5 STRING:Q6AYB5
PRIDE:Q6AYB5 Ensembl:ENSRNOT00000049937 GeneID:116650
KEGG:rno:116650 UCSC:RGD:621390 InParanoid:Q6AYB5 NextBio:619403
ArrayExpress:Q6AYB5 Genevestigator:Q6AYB5
GermOnline:ENSRNOG00000032776 Uniprot:Q6AYB5
Length = 504
Score = 158 (60.7 bits), Expect = 2.5e-07, Sum P(2) = 2.5e-07
Identities = 50/230 (21%), Positives = 104/230 (45%)
Query: 334 ILEKMKDHLIAKNVAADIAVKLCDSVALKLEGKVLGTFESVANTVKSTLTDALVQILSPK 393
+L M + + AD+ +KL + ++ + E +A+ + ++Q K
Sbjct: 27 VLNAMLKEVCTALLEADVNIKLVKQLRENVKSAI--DLEEMASGLNKR---KMIQHAVFK 81
Query: 394 RRVDILRDALEA--KKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFR 451
V ++ ++A +G+ V+ F G+ G GK+T +K+ ++ + DTFR
Sbjct: 82 ELVKLVDPGVKAWTPTKGKQNVIMFVGLQGSGKTTTCSKLAYFYQRKGWKTCLICADTFR 141
Query: 452 AGAVEQLRTHVRHLCSLHPAAKHGGREMVQLFEKGYGKDPAEIAFRAISHARDMHIDVVL 511
AGA +QL+ + A K R + + DP IA + ++ + ++++
Sbjct: 142 AGAFDQLKQN---------ATK--AR--IPFYGSYTEMDPVIIASEGVEKFKNENFEIII 188
Query: 512 IDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQLVKFNN 561
+DT+GR + + L + ++ QPD +++V +A +G Q F +
Sbjct: 189 VDTSGRHKQEDSLFEEMLQVSNAIQPDNIVYVMDASIGQACEAQAKAFKD 238
Score = 144 (55.7 bits), Expect = 1.4e-06, P = 1.4e-06
Identities = 34/140 (24%), Positives = 69/140 (49%)
Query: 490 DPAEIAFRAISHARDMHIDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVG 549
DP IA + ++ + +++++DT+GR + + L + ++ QPD +++V +A +G
Sbjct: 167 DPVIIASEGVEKFKNENFEIIIVDTSGRHKQEDSLFEEMLQVSNAIQPDNIVYVMDASIG 226
Query: 550 NEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGT 609
Q F + + D + +++TK D K G A+S T PI+F+GT
Sbjct: 227 QACEAQAKAFKDKV------D----VASVIVTKLDG-HAKGGGALSAVAATKSPIIFIGT 275
Query: 610 GQTYTDLKSLNAKAVVNALM 629
G+ D + + ++ L+
Sbjct: 276 GEHIDDFEPFKTQPFISKLL 295
Score = 37 (18.1 bits), Expect = 2.5e-07, Sum P(2) = 2.5e-07
Identities = 9/24 (37%), Positives = 12/24 (50%)
Query: 541 LFVGEALVGNEAVDQLVKFNNAMA 564
LF G + N + Q+ K N MA
Sbjct: 440 LFKGGDMSKNVSQSQMAKLNQQMA 463
>TIGR_CMR|CHY_1010 [details] [associations]
symbol:CHY_1010 "flagellar biosynthesis protein FlhF"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0001539 "ciliary or flagellar motility" evidence=ISS]
[GO:0005198 "structural molecule activity" evidence=ISS]
[GO:0009426 "bacterial-type flagellum basal body, distal rod"
evidence=ISS] InterPro:IPR000897 InterPro:IPR003593 Pfam:PF00448
SMART:SM00382 SMART:SM00962 GO:GO:0005525 GO:GO:0019861
EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0017111 GO:GO:0006614
eggNOG:COG1419 KO:K02404 RefSeq:YP_359857.1
ProteinModelPortal:Q3ADC7 STRING:Q3ADC7 GeneID:3728496
KEGG:chy:CHY_1010 PATRIC:21275153 HOGENOM:HOG000254735 OMA:IVESIRI
ProtClustDB:PRK05703 BioCyc:CHYD246194:GJCN-1009-MONOMER
Uniprot:Q3ADC7
Length = 350
Score = 97 (39.2 bits), Expect = 5.5e-07, Sum P(2) = 5.5e-07
Identities = 24/52 (46%), Positives = 30/52 (57%)
Query: 415 AFCGVNGVGKSTNLAKICFWL-IENNLNVLIAACDTFRAGAVEQLRTHVRHL 465
A G GVGK+T LAKI L I + DTFR GAVEQL+ + ++L
Sbjct: 160 ALIGPTGVGKTTTLAKIAGRLAIHEEKPIRFITLDTFRVGAVEQLKIYGKYL 211
Score = 94 (38.1 bits), Expect = 5.5e-07, Sum P(2) = 5.5e-07
Identities = 39/143 (27%), Positives = 67/143 (46%)
Query: 491 PAEIAFRAISHARDMHIDVVLIDTAGRMQDNEPLMRALAKLVKV--NQPDLLLFVGEALV 548
P E+ +RA+ + + + IDTAGR + ++ LA ++ + D+ L + A V
Sbjct: 221 PMEL-WRAVQKQNEG--ETIFIDTAGRPSKKQNQIQELAGFLEAVKKEKDIYLVIS-ATV 276
Query: 549 GNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVG 608
E +++ K D S P + ++TK D D K G I++ +PIV++G
Sbjct: 277 KPEDAEKIAK------DFS----PCGFNKFIVTKIDETD-KFGVLINLIVKFKKPIVYLG 325
Query: 609 TGQTYTD-LKSLNAKAVVNALMK 630
GQ D L S + +V + K
Sbjct: 326 VGQNVPDDLISATPELIVEQVWK 348
>WB|WBGene00009012 [details] [associations]
symbol:F21D5.7 species:6239 "Caenorhabditis elegans"
[GO:0005525 "GTP binding" evidence=IEA] [GO:0006614 "SRP-dependent
cotranslational protein targeting to membrane" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0008312 "7S
RNA binding" evidence=IEA] [GO:0048500 "signal recognition
particle" evidence=IEA] [GO:0003924 "GTPase activity" evidence=IEA]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0006915 "apoptotic process"
evidence=IMP] HAMAP:MF_00306 InterPro:IPR000897 InterPro:IPR003593
InterPro:IPR004125 InterPro:IPR006325 InterPro:IPR013822
InterPro:IPR022941 Pfam:PF00448 Pfam:PF02881 Pfam:PF02978
PROSITE:PS00300 SMART:SM00382 SMART:SM00962 SMART:SM00963
GO:GO:0005525 GO:GO:0006915 GO:GO:0002119 GO:GO:0003924
GO:GO:0006184 GO:GO:0000003 GO:GO:0008312 GO:GO:0006614
SUPFAM:SSF47364 EMBL:Z68161 KO:K03106 Gene3D:1.10.260.30
SUPFAM:SSF47446 TIGRFAMs:TIGR01425 GeneTree:ENSGT00550000074824
OMA:GQQVVKI GO:GO:0048500 EMBL:Z54271 PIR:A88763 PIR:T21140
RefSeq:NP_501507.1 HSSP:P70722 ProteinModelPortal:G5EE80 SMR:G5EE80
EnsemblMetazoa:F21D5.7.1 EnsemblMetazoa:F21D5.7.2 GeneID:259584
KEGG:cel:CELE_F21D5.7 CTD:259584 WormBase:F21D5.7 NextBio:952170
Uniprot:G5EE80
Length = 496
Score = 146 (56.5 bits), Expect = 8.3e-07, P = 8.3e-07
Identities = 37/148 (25%), Positives = 70/148 (47%)
Query: 483 FEKGYGK-DPAEIAFRAISHARDMHIDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLL 541
F Y + DP +IA + +++++DT+GR + L + ++ PD ++
Sbjct: 159 FYGSYSEIDPVKIAAEGVEKFTQEGFEIIIVDTSGRHKQEASLFEEMLQVSNAVTPDNVV 218
Query: 542 FVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTIDDKVGAAISMTYITG 601
FV +A +G Q F+ + D + +++TK D+ K G A+S +T
Sbjct: 219 FVMDASIGQACEAQARAFSQTV------D----VASVIITKLDS-HAKGGGALSAVAVTK 267
Query: 602 QPIVFVGTGQTYTDLKSLNAKAVVNALM 629
P++F+GTG+ D + K+ V L+
Sbjct: 268 SPVIFIGTGEHIDDFEIFKPKSFVQKLL 295
Score = 145 (56.1 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 58/249 (23%), Positives = 110/249 (44%)
Query: 319 GLVGSKN-LTKSDMKPILEKMKDHLIAKNVAADIAVKLCDSV--ALKLEGKVLGTFESVA 375
G +G + + ++ +L+++ LI +V + +L D+V A+ E V G +
Sbjct: 15 GKLGQSTVINEGELDLMLKEVCTALIESDVHIRLVKQLKDNVKKAINFEEIVGGA--NKR 72
Query: 376 NTVKSTLTDALVQILSPKRRVDILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWL 435
++ T+ + L++++ P + K GR V F G+ G GK+T K+ ++
Sbjct: 73 RYIQKTVFNELLKLVDPG-----VTPFTPTK--GRRNVFMFVGLQGSGKTTTCTKMAYYY 125
Query: 436 IENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHPAAKHGGREMVQLFEKGYGK-DPAEI 494
+ DTFRAGA +QL+ + A K R F Y + DP +I
Sbjct: 126 QRKGWKTCLICADTFRAGAFDQLKQN---------ATK--ARIP---FYGSYSEIDPVKI 171
Query: 495 AFRAISHARDMHIDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVD 554
A + +++++DT+GR + L + ++ PD ++FV +A +G
Sbjct: 172 AAEGVEKFTQEGFEIIIVDTSGRHKQEASLFEEMLQVSNAVTPDNVVFVMDASIGQACEA 231
Query: 555 QLVKFNNAM 563
Q F+ +
Sbjct: 232 QARAFSQTV 240
>FB|FBgn0010747 [details] [associations]
symbol:Srp54k "Signal recognition particle protein 54k"
species:7227 "Drosophila melanogaster" [GO:0005786 "signal
recognition particle, endoplasmic reticulum targeting"
evidence=ISS] [GO:0006614 "SRP-dependent cotranslational protein
targeting to membrane" evidence=ISS] [GO:0008312 "7S RNA binding"
evidence=ISS] [GO:0006617 "SRP-dependent cotranslational protein
targeting to membrane, signal sequence recognition" evidence=ISS]
[GO:0005048 "signal sequence binding" evidence=ISS] [GO:0005525
"GTP binding" evidence=IEA] [GO:0003924 "GTPase activity"
evidence=IEA] HAMAP:MF_00306 InterPro:IPR000897 InterPro:IPR003593
InterPro:IPR004125 InterPro:IPR006325 InterPro:IPR013822
InterPro:IPR022941 Pfam:PF00448 Pfam:PF02881 Pfam:PF02978
PROSITE:PS00300 SMART:SM00382 SMART:SM00962 SMART:SM00963
GO:GO:0005525 GO:GO:0003924 GO:GO:0006184 GO:GO:0005048
GO:GO:0008312 SUPFAM:SSF47364 GO:GO:0005786 GO:GO:0006617
eggNOG:COG0541 Gene3D:1.10.260.30 SUPFAM:SSF47446
TIGRFAMs:TIGR01425 HSSP:P70722 EMBL:AY094660
ProteinModelPortal:Q8T3P8 SMR:Q8T3P8 STRING:Q8T3P8 PaxDb:Q8T3P8
PRIDE:Q8T3P8 FlyBase:FBgn0010747 InParanoid:Q8T3P8
OrthoDB:EOG44TMQ3 ChiTaRS:Srp54k ArrayExpress:Q8T3P8 Bgee:Q8T3P8
Uniprot:Q8T3P8
Length = 569
Score = 146 (56.5 bits), Expect = 2.9e-06, Sum P(2) = 2.9e-06
Identities = 39/140 (27%), Positives = 66/140 (47%)
Query: 490 DPAEIAFRAISHARDMHIDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVG 549
DP IA + + +++++DT+GR + E L + + PD ++FV +A +G
Sbjct: 167 DPVVIAQDGVDMFKREGFEMIIVDTSGRHKQEESLFEEMLAVSNAVSPDNIIFVMDATIG 226
Query: 550 NEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGT 609
Q F + + D I +++TK D K G A+S T PI+F+GT
Sbjct: 227 QACEAQAKAFKDKV------D----IGSVIITKLDG-HAKGGGALSAVAATQSPIIFIGT 275
Query: 610 GQTYTDLKSLNAKAVVNALM 629
G+ DL+ K V+ L+
Sbjct: 276 GEHIDDLEPFKTKPFVSKLL 295
Score = 142 (55.0 bits), Expect = 2.8e-06, P = 2.8e-06
Identities = 50/229 (21%), Positives = 99/229 (43%)
Query: 335 LEKMKDHLIAKNVAADIAVKLCDSVALKLEGKVLGTFESVANTVKSTLTDALVQILSPKR 394
L M + A + AD+ ++L + + + F+ +A + ++Q K
Sbjct: 28 LNSMLKEICAALLEADVNIRLVKQLRENVRAVI--DFDEMAGGLNKR---RMIQSAVFKE 82
Query: 395 RVDILRDALEAKK--QGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRA 452
V ++ ++ + +G+ V+ F G+ G GK+T K+ + + N + DTFRA
Sbjct: 83 LVKLVDPGVKPYQPIKGKANVVMFVGLQGSGKTTTCTKLAYHYQKRNWKSCLVCADTFRA 142
Query: 453 GAVEQLRTHVRHLCSLHPAAKHGGREMVQLFEKGYGKDPAEIAFRAISHARDMHIDVVLI 512
GA +Q++ + A K R + + DP IA + + +++++
Sbjct: 143 GAYDQVKQN---------ATK--AR--IPFYGSYTEIDPVVIAQDGVDMFKREGFEMIIV 189
Query: 513 DTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQLVKFNN 561
DT+GR + E L + + PD ++FV +A +G Q F +
Sbjct: 190 DTSGRHKQEESLFEEMLAVSNAVSPDNIIFVMDATIGQACEAQAKAFKD 238
Score = 41 (19.5 bits), Expect = 2.9e-06, Sum P(2) = 2.9e-06
Identities = 19/66 (28%), Positives = 32/66 (48%)
Query: 419 VNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHPAAKHGG-- 476
+N ++ L +IC L+E ++N+ + V+QLR +VR + A GG
Sbjct: 23 INEEALNSMLKEICAALLEADVNIRL----------VKQLRENVRAVIDFDEMA--GGLN 70
Query: 477 -REMVQ 481
R M+Q
Sbjct: 71 KRRMIQ 76
>TIGR_CMR|CJE_0061 [details] [associations]
symbol:CJE_0061 "flagellar biosynthetic protein FlhF"
species:195099 "Campylobacter jejuni RM1221" [GO:0001539 "ciliary
or flagellar motility" evidence=ISS] [GO:0005525 "GTP binding"
evidence=ISS] [GO:0009296 "flagellum assembly" evidence=ISS]
InterPro:IPR000897 InterPro:IPR003593 InterPro:IPR020006
Pfam:PF00448 SMART:SM00382 SMART:SM00962 GO:GO:0005525
GO:GO:0005886 GO:GO:0019861 EMBL:CP000025 GenomeReviews:CP000025_GR
GO:GO:0017111 GO:GO:0043064 GO:GO:0006614 eggNOG:COG1419 KO:K02404
HOGENOM:HOG000254735 ProtClustDB:PRK05703 TIGRFAMs:TIGR03499
RefSeq:YP_178086.1 ProteinModelPortal:Q5HX99 STRING:Q5HX99
GeneID:3230824 KEGG:cjr:CJE0061 PATRIC:20041827 OMA:KVATNEY
BioCyc:CJEJ195099:GJC0-65-MONOMER Uniprot:Q5HX99
Length = 484
Score = 98 (39.6 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
Identities = 35/99 (35%), Positives = 48/99 (48%)
Query: 363 LEGKVLGTFESVANTVKSTLTDALVQIL-SPKRRVDILRDALEAKKQGRPFVMAFCGVNG 421
LE + T E++ +K T DA+ + S R + R + KKQ +M G G
Sbjct: 237 LEAIMKATIENMPAAMK-TNKDAVQRYFHSLLRNILPCRVESDIKKQK---IMMLVGPTG 292
Query: 422 VGKSTNLAKICFWLI--ENNLNVLIAACDTFRAGAVEQL 458
VGK+T LAK+ F + I DT+R GAVEQL
Sbjct: 293 VGKTTTLAKLAFRYAYGDKRYKTGIITLDTYRIGAVEQL 331
Score = 84 (34.6 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
Identities = 34/125 (27%), Positives = 59/125 (47%)
Query: 508 DVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQLVKFNNAMADHS 567
+V+L+DT G Q ++ +KL K + L+ + N V K + M +
Sbjct: 362 EVILVDTIGNSQYDQ------SKLAKTKE--FLMHSNAEIDVNLVVSANTKQEDLMEIYK 413
Query: 568 LSDNPHLIDGIVLTKFDTIDDKV-GAAISMTYITGQPIVFVGTGQTYTD-LKSLNAKAVV 625
+ ID +++TKFD + KV G S+ Y T P+ F GQ D L+ N+ +V
Sbjct: 414 NFSFLN-IDTLIITKFD--ETKVFGNIFSLVYETNIPLSFFSIGQEVPDDLEVANSDFLV 470
Query: 626 NALMK 630
+ +++
Sbjct: 471 HCILE 475
>UNIPROTKB|Q3V8C7 [details] [associations]
symbol:flhF "Flagellar biogenesis protein FlhF"
species:243231 "Geobacter sulfurreducens PCA" [GO:0003674
"molecular_function" evidence=ND] InterPro:IPR000897
InterPro:IPR003593 InterPro:IPR020006 Pfam:PF00448 SMART:SM00382
SMART:SM00962 GO:GO:0005525 GO:GO:0005886 GO:GO:0019861
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0017111 GO:GO:0043064
GO:GO:0006614 KO:K02404 HOGENOM:HOG000254735 RefSeq:NP_954097.2
ProteinModelPortal:Q3V8C7 GeneID:2686907 KEGG:gsu:GSU3055
PATRIC:22028961 OMA:YRNELLV ProtClustDB:CLSK829079
BioCyc:GSUL243231:GH27-2995-MONOMER TIGRFAMs:TIGR03499
Uniprot:Q3V8C7
Length = 451
Score = 112 (44.5 bits), Expect = 2.5e-05, Sum P(2) = 2.5e-05
Identities = 29/63 (46%), Positives = 38/63 (60%)
Query: 403 LEAKKQGRPFVMAFCGVNGVGKSTNLAKIC--FWLIENNLNVLIAACDTFRAGAVEQLRT 460
L KK G P ++A G GVGK+T +AK+ + L E + LI D FR GAVEQL+T
Sbjct: 249 LTVKKNG-PRIIALVGPTGVGKTTTIAKLAAHYALREGHRAALITI-DNFRVGAVEQLKT 306
Query: 461 HVR 463
+ R
Sbjct: 307 YSR 309
Score = 65 (27.9 bits), Expect = 2.5e-05, Sum P(2) = 2.5e-05
Identities = 34/142 (23%), Positives = 63/142 (44%)
Query: 475 GGREMVQLFEKGYGKDPAEIAFRA--ISHARDMHID--VVLIDTAGRM-QDNEPLMRALA 529
G E ++ + + G P E+A A + A ++H D ++LIDTAGR +D+E +
Sbjct: 299 GAVEQLKTYSRIMGV-PVEVAATAAELEAAIELHSDKELILIDTAGRSHKDSEKIEELKG 357
Query: 530 KLVKVNQPDLLLFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTIDDK 589
L ++ L + E ++ + +F LS + ++ TK D +
Sbjct: 358 FLESRFAIEIHLCLAATTRDREVLEIVERFG------VLS-----VSRVIFTKLDE-SES 405
Query: 590 VGAAISMTYITGQPIVFVGTGQ 611
G+ ++ T P+ + TGQ
Sbjct: 406 YGSIVNAHLRTKFPLSYFTTGQ 427
>TIGR_CMR|GSU_3055 [details] [associations]
symbol:GSU_3055 "flagellar biosynthetic protein FlhF,
putative" species:243231 "Geobacter sulfurreducens PCA" [GO:0001539
"ciliary or flagellar motility" evidence=ISS] [GO:0003674
"molecular_function" evidence=ND] [GO:0009288 "bacterial-type
flagellum" evidence=ISS] [GO:0009296 "flagellum assembly"
evidence=ISS] InterPro:IPR000897 InterPro:IPR003593
InterPro:IPR020006 Pfam:PF00448 SMART:SM00382 SMART:SM00962
GO:GO:0005525 GO:GO:0005886 GO:GO:0019861 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0017111 GO:GO:0043064 GO:GO:0006614
KO:K02404 HOGENOM:HOG000254735 RefSeq:NP_954097.2
ProteinModelPortal:Q3V8C7 GeneID:2686907 KEGG:gsu:GSU3055
PATRIC:22028961 OMA:YRNELLV ProtClustDB:CLSK829079
BioCyc:GSUL243231:GH27-2995-MONOMER TIGRFAMs:TIGR03499
Uniprot:Q3V8C7
Length = 451
Score = 112 (44.5 bits), Expect = 2.5e-05, Sum P(2) = 2.5e-05
Identities = 29/63 (46%), Positives = 38/63 (60%)
Query: 403 LEAKKQGRPFVMAFCGVNGVGKSTNLAKIC--FWLIENNLNVLIAACDTFRAGAVEQLRT 460
L KK G P ++A G GVGK+T +AK+ + L E + LI D FR GAVEQL+T
Sbjct: 249 LTVKKNG-PRIIALVGPTGVGKTTTIAKLAAHYALREGHRAALITI-DNFRVGAVEQLKT 306
Query: 461 HVR 463
+ R
Sbjct: 307 YSR 309
Score = 65 (27.9 bits), Expect = 2.5e-05, Sum P(2) = 2.5e-05
Identities = 34/142 (23%), Positives = 63/142 (44%)
Query: 475 GGREMVQLFEKGYGKDPAEIAFRA--ISHARDMHID--VVLIDTAGRM-QDNEPLMRALA 529
G E ++ + + G P E+A A + A ++H D ++LIDTAGR +D+E +
Sbjct: 299 GAVEQLKTYSRIMGV-PVEVAATAAELEAAIELHSDKELILIDTAGRSHKDSEKIEELKG 357
Query: 530 KLVKVNQPDLLLFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTIDDK 589
L ++ L + E ++ + +F LS + ++ TK D +
Sbjct: 358 FLESRFAIEIHLCLAATTRDREVLEIVERFG------VLS-----VSRVIFTKLDE-SES 405
Query: 590 VGAAISMTYITGQPIVFVGTGQ 611
G+ ++ T P+ + TGQ
Sbjct: 406 YGSIVNAHLRTKFPLSYFTTGQ 427
>UNIPROTKB|Q722L6 [details] [associations]
symbol:LMOf2365_0717 "Putative flagellar biosynthesis
protein FlhF" species:265669 "Listeria monocytogenes serotype 4b
str. F2365" [GO:0003674 "molecular_function" evidence=ND]
InterPro:IPR000897 InterPro:IPR020006 Pfam:PF00448 GO:GO:0005525
GO:GO:0005886 GO:GO:0019861 EMBL:AE017262 GenomeReviews:AE017262_GR
GO:GO:0043064 GO:GO:0006614 eggNOG:COG1419 KO:K02404
TIGRFAMs:TIGR03499 RefSeq:YP_013321.1 ProteinModelPortal:Q722L6
STRING:Q722L6 GeneID:2797398 KEGG:lmf:LMOf2365_0717 PATRIC:20322642
HOGENOM:HOG000254016 OMA:QFHGKKK ProtClustDB:PRK12726
Uniprot:Q722L6
Length = 407
Score = 121 (47.7 bits), Expect = 0.00033, P = 0.00033
Identities = 50/174 (28%), Positives = 77/174 (44%)
Query: 371 FESVANTVKSTLTDALVQILSPKRRVDILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAK 430
F+ V +TD V LS K V+ D+ + +++ G GVGK+T L K
Sbjct: 172 FKQVETAHLDDITDWFVPYLSGKLAVE---DSFDLSNHR---IISLIGQTGVGKTTTLVK 225
Query: 431 ICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHPAAKHGGREMVQLFEKGYGKD 490
+ + L++ N V DTFR+GAVEQ + + L V+L
Sbjct: 226 LGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLD-------------VELI---VATS 269
Query: 491 PAEI--AFRAISHARDMHIDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLF 542
PAE+ A + +++ +D +LIDT GR E + ++ V PDL F
Sbjct: 270 PAELEEAVQYMTYVNC--VDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCF 321
>UNIPROTKB|Q8ECD1 [details] [associations]
symbol:flhF "Flagellar polar localization control system
flagellar assembly determinant GTPase FlhF" species:211586
"Shewanella oneidensis MR-1" [GO:0001539 "ciliary or flagellar
motility" evidence=ISS] [GO:0003674 "molecular_function"
evidence=ND] [GO:0009296 "flagellum assembly" evidence=ISS]
InterPro:IPR000897 InterPro:IPR003593 InterPro:IPR020006
Pfam:PF00448 SMART:SM00382 SMART:SM00962 GO:GO:0005525
GO:GO:0005886 GO:GO:0019861 EMBL:AE014299 GenomeReviews:AE014299_GR
GO:GO:0017111 GO:GO:0009296 GO:GO:0001539 GO:GO:0006614 KO:K02404
HOGENOM:HOG000254735 ProtClustDB:PRK05703 TIGRFAMs:TIGR03499
OMA:EPRQAWR RefSeq:NP_718767.1 ProteinModelPortal:Q8ECD1
GeneID:1170905 KEGG:son:SO_3212 PATRIC:23526108 Uniprot:Q8ECD1
Length = 458
Score = 98 (39.6 bits), Expect = 0.00042, Sum P(2) = 0.00042
Identities = 56/177 (31%), Positives = 76/177 (42%)
Query: 324 KNLTKSDMKPILEKMKD------HLIAKNVAADIAV--KLCDSVALKLEGKVLGTFESVA 375
K T LE M+D +L+ V+A + K D V LE K+L S A
Sbjct: 142 KPQTSQKQNADLEAMRDELASLRNLLTHQVSALMTEHKKRIDPVGAMLESKLLEAEFSPA 201
Query: 376 NTVKSTLTDALVQILSPKRRVDILRDALE--AKKQGRPFV-----MAFCGVNGVGKSTNL 428
V S L AL Q +P V L +L QG V +A G GVGK+T+L
Sbjct: 202 --VASKLA-ALSQHYTPAELVRALPQSLANMLDNQGDDIVKQGGVVALVGPTGVGKTTSL 258
Query: 429 AKIC--FWLIENNLNVLIAACDTFRAGAVEQLRTHVRHL-CSLHPAAKHGGREMVQL 482
AK+ F V + D +R GA EQL T+ + + C + A H E+ Q+
Sbjct: 259 AKLAARFAAHHGADQVALITTDHYRIGAYEQLATYGKIMGCPVKQA--HDLAELEQI 313
Score = 68 (29.0 bits), Expect = 0.00042, Sum P(2) = 0.00042
Identities = 33/110 (30%), Positives = 53/110 (48%)
Query: 509 VVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQLVKFNNAMADHSL 568
+VLIDTAG Q + L + L L ++ + ++ + G V Q +A+ +H
Sbjct: 322 LVLIDTAGMGQRDMRLYQQLDNLTANSRIPIRSYLVLSATGQRRVLQ-----DAV-NH-F 374
Query: 569 SDNPHLIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGTGQTYT-DLK 617
P + G+VLTK D GA +S+ +G P+ +V GQ D+K
Sbjct: 375 KRIP--LSGVVLTKLDESVSLAGA-LSVLIQSGLPLSYVTDGQRVPEDMK 421
>TIGR_CMR|SO_3212 [details] [associations]
symbol:SO_3212 "flagellar biosynthetic protein FlhF"
species:211586 "Shewanella oneidensis MR-1" [GO:0001539 "ciliary or
flagellar motility" evidence=ISS] [GO:0003674 "molecular_function"
evidence=ND] [GO:0009296 "flagellum assembly" evidence=ISS]
InterPro:IPR000897 InterPro:IPR003593 InterPro:IPR020006
Pfam:PF00448 SMART:SM00382 SMART:SM00962 GO:GO:0005525
GO:GO:0005886 GO:GO:0019861 EMBL:AE014299 GenomeReviews:AE014299_GR
GO:GO:0017111 GO:GO:0009296 GO:GO:0001539 GO:GO:0006614 KO:K02404
HOGENOM:HOG000254735 ProtClustDB:PRK05703 TIGRFAMs:TIGR03499
OMA:EPRQAWR RefSeq:NP_718767.1 ProteinModelPortal:Q8ECD1
GeneID:1170905 KEGG:son:SO_3212 PATRIC:23526108 Uniprot:Q8ECD1
Length = 458
Score = 98 (39.6 bits), Expect = 0.00042, Sum P(2) = 0.00042
Identities = 56/177 (31%), Positives = 76/177 (42%)
Query: 324 KNLTKSDMKPILEKMKD------HLIAKNVAADIAV--KLCDSVALKLEGKVLGTFESVA 375
K T LE M+D +L+ V+A + K D V LE K+L S A
Sbjct: 142 KPQTSQKQNADLEAMRDELASLRNLLTHQVSALMTEHKKRIDPVGAMLESKLLEAEFSPA 201
Query: 376 NTVKSTLTDALVQILSPKRRVDILRDALE--AKKQGRPFV-----MAFCGVNGVGKSTNL 428
V S L AL Q +P V L +L QG V +A G GVGK+T+L
Sbjct: 202 --VASKLA-ALSQHYTPAELVRALPQSLANMLDNQGDDIVKQGGVVALVGPTGVGKTTSL 258
Query: 429 AKIC--FWLIENNLNVLIAACDTFRAGAVEQLRTHVRHL-CSLHPAAKHGGREMVQL 482
AK+ F V + D +R GA EQL T+ + + C + A H E+ Q+
Sbjct: 259 AKLAARFAAHHGADQVALITTDHYRIGAYEQLATYGKIMGCPVKQA--HDLAELEQI 313
Score = 68 (29.0 bits), Expect = 0.00042, Sum P(2) = 0.00042
Identities = 33/110 (30%), Positives = 53/110 (48%)
Query: 509 VVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQLVKFNNAMADHSL 568
+VLIDTAG Q + L + L L ++ + ++ + G V Q +A+ +H
Sbjct: 322 LVLIDTAGMGQRDMRLYQQLDNLTANSRIPIRSYLVLSATGQRRVLQ-----DAV-NH-F 374
Query: 569 SDNPHLIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGTGQTYT-DLK 617
P + G+VLTK D GA +S+ +G P+ +V GQ D+K
Sbjct: 375 KRIP--LSGVVLTKLDESVSLAGA-LSVLIQSGLPLSYVTDGQRVPEDMK 421
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.319 0.135 0.386 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 630 572 0.00080 120 3 11 22 0.39 34
36 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 83
No. of states in DFA: 615 (65 KB)
Total size of DFA: 296 KB (2155 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 44.26u 0.07s 44.33t Elapsed: 00:00:25
Total cpu time: 44.29u 0.07s 44.36t Elapsed: 00:00:25
Start: Thu Aug 15 11:38:39 2013 End: Thu Aug 15 11:39:04 2013