RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy11993
(630 letters)
>d2fh5a1 d.110.4.4 (A:1-129) Signal recognition particle receptor
alpha subunit, N-terminal domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 129
Score = 167 bits (424), Expect = 6e-50
Identities = 79/129 (61%), Positives = 96/129 (74%), Gaps = 4/129 (3%)
Query: 1 MLDFFTIFSKGGIVLWYFQSASQIFTPSLNALIKSVILQERGGNQVFEHNGLVLKHKLDN 60
M+DFFTIFSKGG+VLW FQ S T +NALI+SV+LQERGGN F H L LK+KLDN
Sbjct: 1 MVDFFTIFSKGGLVLWCFQGVSDSCTGPVNALIRSVLLQERGGNNSFTHEALTLKYKLDN 60
Query: 61 EFDLVFVVGFQKILQLSYVDKLLDDVHLEFRDKYKNELGSDMHLY----DYDFESTYNVL 116
+F+LVFVVGFQKIL L+YVDKL+DDVH FRDKY+ E+ L +DF++ + L
Sbjct: 61 QFELVFVVGFQKILTLTYVDKLIDDVHRLFRDKYRTEIQQQSALSLLNGTFDFQNDFLRL 120
Query: 117 LKEAEEWSK 125
L+EAEE SK
Sbjct: 121 LREAEESSK 129
>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal
recognition particle receptor FtsY {Escherichia coli
[TaxId: 562]}
Length = 211
Score = 147 bits (372), Expect = 2e-41
Identities = 70/220 (31%), Positives = 105/220 (47%), Gaps = 18/220 (8%)
Query: 410 RPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLH 469
PFV+ GVNGVGK+T + K+ + +V++AA DTFRA AVEQL+ +
Sbjct: 8 APFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRN---- 63
Query: 470 PAAKHGGREMVQLFEKGYGKDPAEIAFRAISHARDMHIDVVLIDTAGRMQDNEPLMRALA 529
+ + + G D A + F AI A+ +IDV++ DTAGR+Q+ LM L
Sbjct: 64 ---------NIPVIAQHTGADSASVIFDAIQAAKARNIDVLIADTAGRLQNKSHLMEELK 114
Query: 530 KLVKVNQPDLLLFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTIDDK 589
K+V+V + + E ++ +A + A H + GI LTK D K
Sbjct: 115 KIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKLFHEAVG----LTGITLTKLDG-TAK 169
Query: 590 VGAAISMTYITGQPIVFVGTGQTYTDLKSLNAKAVVNALM 629
G S+ G PI ++G G+ DL+ A + AL
Sbjct: 170 GGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDFIEALF 209
>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal
recognition particle receptor FtsY {Thermotoga maritima
[TaxId: 2336]}
Length = 213
Score = 141 bits (355), Expect = 4e-39
Identities = 71/220 (32%), Positives = 108/220 (49%), Gaps = 18/220 (8%)
Query: 410 RPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLH 469
PFV+ GVNG GK+T+ K+ ++ +V++AA DTFRA A+EQL+
Sbjct: 10 PPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKI--------- 60
Query: 470 PAAKHGGREMVQLFEKGYGKDPAEIAFRAISHARDMHIDVVLIDTAGRMQDNEPLMRALA 529
G R + G DPA +AF A++HA + DVV+IDTAGR+ + LM L
Sbjct: 61 ----WGERVGATVISHSEGADPAAVAFDAVAHALARNKDVVIIDTAGRLHTKKNLMEELR 116
Query: 530 KLVKVNQPDLLLFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTIDDK 589
K+ +V + + E L+ +A A + + GI+LTK D K
Sbjct: 117 KVHRVVKKKIPDAPHETLLVIDATTGQNGLVQAKIFKEAVN----VTGIILTKLDG-TAK 171
Query: 590 VGAAISMTYITGQPIVFVGTGQTYTDLKSLNAKAVVNALM 629
G +++ G PI F+G G+ DL+ + +A V L+
Sbjct: 172 GGITLAIARELGIPIKFIGVGEKAEDLRPFDPEAFVEVLL 211
>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal
recognition particle receptor FtsY {Thermus aquaticus
[TaxId: 271]}
Length = 207
Score = 140 bits (354), Expect = 5e-39
Identities = 65/229 (28%), Positives = 106/229 (46%), Gaps = 30/229 (13%)
Query: 408 QGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCS 467
+ + V+ GVNGVGK+T +AK+ + V+ A DTFRA QL
Sbjct: 3 EPKGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLS-------- 54
Query: 468 LHPAAKHGGREMVQLFEKGYGKDPAEIAFRAISHARDMHIDVVLIDTAGRMQDNEPLMRA 527
+ G R + + + G DPA +A+ A+ + D++ +DTAGR+ LM
Sbjct: 55 -----EWGKRLSIPVIQGPEGTDPAALAYDAVQAMKARGYDLLFVDTAGRLHTKHNLMEE 109
Query: 528 LAKLVKV------NQPDLLLFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLT 581
L K+ + +P + V +A+ G ++Q KF+ A+ + G+++T
Sbjct: 110 LKKVKRAIAKADPEEPKEVWLVLDAVTGQNGLEQAKKFHEAVG----------LTGVIVT 159
Query: 582 KFDTIDDKVGAAISMTYITGQPIVFVGTGQTYTDLKSLNAKAVVNALMK 630
K D K G I + PI FVG G+ DL+ + +A V AL++
Sbjct: 160 KLDG-TAKGGVLIPIVRTLKVPIKFVGVGEGPDDLQPFDPEAFVEALLE 207
>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence
recognition protein Ffh {Archaeon Acidianus ambivalens
[TaxId: 2283]}
Length = 211
Score = 135 bits (340), Expect = 5e-37
Identities = 60/228 (26%), Positives = 99/228 (43%), Gaps = 26/228 (11%)
Query: 404 EAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVR 463
+ P+V+ GV G GK+T K+ ++ + V + D +R A+EQL+
Sbjct: 5 KVIPDKIPYVIMLVGVQGTGKATTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQ--- 61
Query: 464 HLCSLHPAAKHGGREMVQLFEKGYGKDPAEIAFRAISHARDMHIDVVLIDTAGRMQDNEP 523
G + V ++ + KD IA R + ++++++DTAGR E
Sbjct: 62 ----------LGQQIGVPVYGEPGEKDVVGIAKRGVEKFLSEKMEIIIVDTAGRHGYGEE 111
Query: 524 LMR--ALAKLVKVNQPDLLLFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLT 581
+ + + +PD + V +A +G +A D KFN A I I++T
Sbjct: 112 AALLEEMKNIYEAIKPDEVTLVIDASIGQKAYDLASKFNQASK----------IGTIIIT 161
Query: 582 KFDTIDDKVGAAISMTYITGQPIVFVGTGQTYTDLKSLNAKAVVNALM 629
K D K G A+S TG I F+GTG+ +L+ N + V L
Sbjct: 162 KMDG-TAKGGGALSAVAATGATIKFIGTGEKIDELEVFNPRRFVARLH 208
>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence
recognition protein Ffh {Thermus aquaticus [TaxId: 271]}
Length = 207
Score = 133 bits (335), Expect = 2e-36
Identities = 68/221 (30%), Positives = 103/221 (46%), Gaps = 24/221 (10%)
Query: 409 GRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSL 468
+ G+ G GK+T AK+ + L+ A DT R A EQLR +
Sbjct: 8 KDRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKV--- 64
Query: 469 HPAAKHGGREMVQLFEKGYGKDPAEIAFRAISHARDMHIDVVLIDTAGRMQDNEPLMRAL 528
V + E G+ P I R AR D++L+DTAGR+Q +EPLM L
Sbjct: 65 ----------GVPVLEVMDGESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGEL 114
Query: 529 AKLVKVNQPDLLLFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTIDD 588
A+L +V PD +L V +A+ G EA+ F+ + + G+VLTK D D
Sbjct: 115 ARLKEVLGPDEVLLVLDAMTGQEALSVARAFDEKVG----------VTGLVLTKLDG-DA 163
Query: 589 KVGAAISMTYITGQPIVFVGTGQTYTDLKSLNAKAVVNALM 629
+ GAA+S ++TG+PI F G + L+ + + ++
Sbjct: 164 RGGAALSARHVTGKPIYFAGVSEKPEGLEPFYPERLAGRIL 204
>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus
acidocaldarius [TaxId: 2285]}
Length = 194
Score = 82.4 bits (202), Expect = 1e-18
Identities = 37/217 (17%), Positives = 68/217 (31%), Gaps = 27/217 (12%)
Query: 413 VMAFCGVNGVGKSTNLAKICFWLIENNLNV-LIAACDTFRAGAVEQLRTHVRHLCSLHPA 471
+ G+ GVGKST LAK+ L +N +I D A A++
Sbjct: 3 IGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDFMLATALKLGYA----------- 51
Query: 472 AKHGGREMVQLFEKGYGKDPAEIAFRAISHARDMHIDVVLIDTAGRMQDNEPLMRALAKL 531
EM +L + K + A AR + IDT ++ + L
Sbjct: 52 --KDRDEMRKLSVEKQKKLQIDAAKGIAEEARAGGEGYLFIDTHAVIRTPSGYLPGLPSY 109
Query: 532 VKVNQPDLLLFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTIDDKVG 591
V ++F+ EA ++ +TI+
Sbjct: 110 VITEINPSVIFLLEA-----DPKIILSRQKRDTTR-----NRNDYSDESVILETINFARY 159
Query: 592 AAISMTYITGQPIVFVGTGQTYTDLKSLNAKAVVNAL 628
AA + + G + + + + A ++ ++
Sbjct: 160 AATASAVLAGSTVKVIVNVEGDPS---IAANEIIRSM 193
>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus
voltae [TaxId: 2188]}
Length = 190
Score = 78.1 bits (191), Expect = 3e-17
Identities = 32/216 (14%), Positives = 63/216 (29%), Gaps = 29/216 (13%)
Query: 413 VMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHPAA 472
V+ GV GVG +T+ L + +N + + + ++
Sbjct: 3 VVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGSVMFEVAKEE-------------N 49
Query: 473 KHGGREMVQLFEKGYGKDPAEIAFRAISHARDMHIDVVLIDTAGRMQDNEPLMRALAKLV 532
R+ ++ + K ++A R I+ V +DT + + + L V
Sbjct: 50 LVSDRDQMRKMDPETQKRIQKMAGRKIAEMAK--ESPVAVDTHSTVSTPKGYLPGLPSWV 107
Query: 533 KVNQPDLLLFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTIDDKVGA 592
L+ V E + ++ D + A
Sbjct: 108 LNELNPDLIIVVETTGDEILMRRMSDETRVRDL----------DTASTIEQH-QFMNRCA 156
Query: 593 AISMTYITGQPIVFVGTGQTYTDLKSLNAKAVVNAL 628
A+S +TG + V L + + N L
Sbjct: 157 AMSYGVLTGATVKIVQNRN---GLLDQAVEELTNVL 189
>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 189
Score = 62.0 bits (149), Expect = 1e-11
Identities = 26/176 (14%), Positives = 54/176 (30%), Gaps = 20/176 (11%)
Query: 418 GVNGVGKSTNLAKICFWLIENNLNVLIAACDT---------FRAGAVEQLRTHVRHLCSL 468
G GVGK+T + K L + + V + F + R + +
Sbjct: 8 GPPGVGKTTLIHKASEVLKSSGVPVDGFYTEEVRQGGRRIGFDVVTLSGTRGPLSRVGLE 67
Query: 469 HPAAKHGGREMVQLFEKGYGKDPAEIAFRAISHARDMHIDVVLIDTAGRMQDNEPLMRAL 528
P K R + + + A R + V +ID G+M+ L
Sbjct: 68 PPPGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQA 127
Query: 529 AKLVKVNQPDLLLFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFD 584
+ ++ P ++ + + + + + N + +TK +
Sbjct: 128 VRQT-LSTPGTIILGTIPVPKGKPLALVEEI----------RNRKDVKVFNVTKEN 172
>d1bifa1 c.37.1.7 (A:37-249)
6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase,
kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 213
Score = 49.6 bits (117), Expect = 2e-07
Identities = 16/182 (8%), Positives = 44/182 (24%), Gaps = 28/182 (15%)
Query: 411 PFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHP 470
P ++ G+ GK+ K+ +L + +R V+ ++ L
Sbjct: 2 PTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYRRDMVKTYKSFEFFLP---- 57
Query: 471 AAKHGGREMVQLFEKGYGKDPAEIAFRAISHARDMHIDVVLIDTAGRMQDNEPLMRALA- 529
+ K + + V + D ++ ++
Sbjct: 58 --------DNEEGLKIRKQCALAALNDVRKFLSEEGGHVAVFDATNTTRERRAMIFNFGE 109
Query: 530 --------KLVKVNQPDL-------LLFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHL 574
P++ + V ++ + F + + S
Sbjct: 110 QNGYKTFFVESICVDPEVIAANIVQVKLGSPDYVNRDSDEATEDFMRRIECYENSYESLD 169
Query: 575 ID 576
+
Sbjct: 170 EE 171
>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK
{Escherichia coli [TaxId: 562]}
Length = 327
Score = 46.0 bits (108), Expect = 8e-06
Identities = 29/178 (16%), Positives = 58/178 (32%), Gaps = 21/178 (11%)
Query: 379 KSTLTDALVQILSPKRRV----------------DILRDALEA--KKQGRPFVMAFCGVN 420
++TL +++ ++ +R + L+A G + G
Sbjct: 4 EATLAESIRRLRQGERATLAQAMTLVESRHPRHQALSTQLLDAIMPYCGNTLRLGVTGTP 63
Query: 421 GVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHPAAKHGGREMV 480
G GKST L LI L V + A D + ++ A+ +
Sbjct: 64 GAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILGDKT---RMNDLARAEAAFIR 120
Query: 481 QLFEKGYGKDPAEIAFRAISHARDMHIDVVLIDTAGRMQDNEPLMRALAKLVKVNQPD 538
+ G+ ++ A + DVV+++T G Q + R + + +
Sbjct: 121 PVPSSGHLGGASQRARELMLLCEAAGYDVVIVETVGVGQSETEVARMVDCFISLQIAG 178
>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 198
Score = 42.1 bits (97), Expect = 6e-05
Identities = 23/133 (17%), Positives = 43/133 (32%), Gaps = 2/133 (1%)
Query: 393 KRRVDILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRA 452
+ R+D L + A K V+ G++ GK+T ++ L E ++V + D
Sbjct: 4 RDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHIV 63
Query: 453 GAVEQLRTHVRHLCSLHPAAKHGGREMVQLFEKGYGKDPAEIAFRAISHARDMHIDVVLI 512
++ T + QLF + + H D H +
Sbjct: 64 ERAKRYHTGNEEWFEYYYLQWDVEWLTHQLFRQLKASHQLTL--PFYDHETDTHSKRTVY 121
Query: 513 DTAGRMQDNEPLM 525
+ M E +
Sbjct: 122 LSDSDMIMIEGVF 134
>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium
extorquens [TaxId: 408]}
Length = 323
Score = 38.3 bits (88), Expect = 0.002
Identities = 26/125 (20%), Positives = 42/125 (33%), Gaps = 5/125 (4%)
Query: 397 DILRDALEA--KKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGA 454
+RD ++A + GR + GV GVGKST + + L V + A D
Sbjct: 35 AAVRDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSS--- 91
Query: 455 VEQLRTHVRHLCSLHPAAKHGGREMVQLFEKGYGKDPAEIAFRAISHARDMHIDVVLIDT 514
+ + + A + G A + DV+L++T
Sbjct: 92 TRTGGSILGDKTRMARLAIDRNAFIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVET 151
Query: 515 AGRMQ 519
G Q
Sbjct: 152 VGVGQ 156
>d2qy9a1 a.24.13.1 (A:201-284) Signal recognition particle receptor,
FtsY {Escherichia coli [TaxId: 562]}
Length = 84
Score = 34.3 bits (79), Expect = 0.004
Identities = 15/86 (17%), Positives = 34/86 (39%), Gaps = 8/86 (9%)
Query: 307 GKANKGMFSLFRGLVGSKNLTKSDMKPILEKMKDHLIAKNVAADIAVKLCDSVALKLEGK 366
K + + S F L K + + E++++ L+ +V + K+ ++ K
Sbjct: 4 LKTKENLGSGFISLFRGKKIDDD----LFEELEEQLLIADVGVETTRKIITNLTEGASRK 59
Query: 367 VLGTFESVANTVKSTLTDALVQILSP 392
L A + L + + +IL+
Sbjct: 60 QLRD----AEALYGLLKEEMGEILAK 81
>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta,
toxin zeta subunit {Streptococcus pyogenes [TaxId:
1314]}
Length = 273
Score = 36.5 bits (83), Expect = 0.006
Identities = 27/195 (13%), Positives = 46/195 (23%), Gaps = 24/195 (12%)
Query: 397 DILRDALEAKK-QGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAV 455
D L + ++ KK P G G GK++ + I N + + DTF+
Sbjct: 17 DNLEELIQGKKAVESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVI---DNDTFKQ--- 70
Query: 456 EQLRTHVRHLCSLHPAAKHGGREMVQLFEKGYGKDPAEIAFRAISHARDMHIDVVLIDTA 515
HP + + K + IS D ++V+ T
Sbjct: 71 ------------QHPNFDELVKLYEKDVVKHVTPYSNRMTEAIISRLSDQGYNLVIEGTG 118
Query: 516 GRMQDNEPLMRALAKL-----VKVNQPDLLLFVGEALVGNEAVDQLVKFNNAMADHSLSD 570
L + V + + E + D
Sbjct: 119 RTTDVPIQTATMLQAKGYETKMYVMAVPKINSYLGTIERYETMYADDPMTARATPKQAHD 178
Query: 571 NPHLIDGIVLTKFDT 585
L
Sbjct: 179 IVVKNLPTNLETLHK 193
>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein
Aq_1292 {Aquifex aeolicus [TaxId: 63363]}
Length = 178
Score = 35.0 bits (79), Expect = 0.012
Identities = 24/151 (15%), Positives = 48/151 (31%), Gaps = 4/151 (2%)
Query: 415 AFCGVNGVGKSTNLAKICFWLIENNLNVLIAACD----TFRAGAVEQLRTHVRHLCSLHP 470
G GVGK+T + KI L + + R G + + S
Sbjct: 4 IITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSKF 63
Query: 471 AAKHGGREMVQLFEKGYGKDPAEIAFRAISHARDMHIDVVLIDTAGRMQDNEPLMRALAK 530
+ + + + I RA A+ V++ID G+M+ R L +
Sbjct: 64 FTSKKLVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVR 123
Query: 531 LVKVNQPDLLLFVGEALVGNEAVDQLVKFNN 561
+ + ++ + V ++ +
Sbjct: 124 QIMHDPNVNVVATIPIRDVHPLVKEIRRLPG 154
>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955
{Pyrococcus abyssi [TaxId: 29292]}
Length = 244
Score = 34.6 bits (78), Expect = 0.022
Identities = 24/180 (13%), Positives = 55/180 (30%), Gaps = 13/180 (7%)
Query: 413 VMAFCGVNGVGKSTNLAKICFWLIENN----LNVLIAACDTFRAGAVEQLRTHVRHLCSL 468
++ F G G GK+T + +L +N +N+ + +++ VR ++
Sbjct: 2 IVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDTGVKELPYEPSID-----VREFVTV 56
Query: 469 HPAAKHGGREMVQLFEKGYGKDPAEIAFRAISHARDMHIDVVLIDTAGRMQDNEPLMRAL 528
+ G + E + + D VLIDT +
Sbjct: 57 EEIMREGYGPNGAIVESYDRLMEKFNEYLNKILRLEKENDYVLIDTP-GQMETFLFHEFG 115
Query: 529 AKLVKVNQPDLLLFVGEALVGNEAVDQLVKFNNAMADHSLSDNPHLIDGIVLTKFDTIDD 588
+L++ L++++ + + + L K D + +
Sbjct: 116 VRLMENLPYPLVVYISDPEIL---KKPNDYCFVRFFALLIDLRLGATTIPALNKVDLLSE 172
>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA
{Escherichia coli [TaxId: 562]}
Length = 279
Score = 34.6 bits (78), Expect = 0.028
Identities = 22/107 (20%), Positives = 36/107 (33%), Gaps = 4/107 (3%)
Query: 396 VDILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAV 455
+ L D + + G ++ G GVGK+T A I L + +V + D A
Sbjct: 8 LSALVDDIARNEHG---LIMLMGKGGVGKTTMAAAIAVRLADMGFDVHLTTSDP-AAHLS 63
Query: 456 EQLRTHVRHLCSLHPAAKHGGREMVQLFEKGYGKDPAEIAFRAISHA 502
L + +L Q + GK+ E R +
Sbjct: 64 MTLNGSLNNLQVSRIDPHEETERYRQHVLETKGKELDEAGKRLLEED 110
>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide
biosynthesis protein MobB {Bacillus stearothermophilus
[TaxId: 1422]}
Length = 165
Score = 33.7 bits (76), Expect = 0.035
Identities = 20/141 (14%), Positives = 38/141 (26%), Gaps = 13/141 (9%)
Query: 413 VMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRA-GAVEQLRTHVRHLCSLHPA 471
V G GK+T + K + V A + VRH + A
Sbjct: 3 VWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHGHGGEPARPEGVDSVRHERAGAVA 62
Query: 472 AKHGGREMVQLFEKGYGKDPAEIAFRAISHARDMHI-----------DVVLIDTAGR-MQ 519
G ++QL + ++ D+ + V++
Sbjct: 63 TAVEGDGLLQLHLRRPLWRLDDVLALYAPLRLDLVLVEGYKQERHPKVVLVRSEEDWASL 122
Query: 520 DNEPLMRALAKLVKVNQPDLL 540
+ +RA+ + P
Sbjct: 123 QHLANIRAVIAWEPLEGPLAH 143
>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK,
N-terminal domain {Escherichia coli [TaxId: 562]}
Length = 232
Score = 33.8 bits (77), Expect = 0.046
Identities = 26/136 (19%), Positives = 42/136 (30%), Gaps = 11/136 (8%)
Query: 413 VMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHPAA 472
+ F G +G GKST L I + ++ I E+ V +L+P
Sbjct: 28 FVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMVFQSYALYP-- 85
Query: 473 KHGGREMVQLFEKGYGKDPAEIAFRAISHARDMHIDVVLIDTA----GRMQDNEPLMRAL 528
E + K G I R A + + +L G + + R L
Sbjct: 86 HLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTL 145
Query: 529 AKLVKVNQPDLLLFVG 544
+P + L
Sbjct: 146 V-----AEPSVFLLDE 156
>d1ii7a_ d.159.1.4 (A:) Mre11 {Archaeon Pyrococcus furiosus [TaxId:
2261]}
Length = 333
Score = 33.9 bits (76), Expect = 0.047
Identities = 8/72 (11%), Positives = 22/72 (30%), Gaps = 4/72 (5%)
Query: 499 ISHARDMHIDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVG----EALVGNEAVD 554
+H D+H+ R ++ + ++ D +L G + +
Sbjct: 3 FAHLADIHLGYEQFHKPQREEEFAEAFKNALEIAVQENVDFILIAGDLFHSSRPSPGTLK 62
Query: 555 QLVKFNNAMADH 566
+ + +H
Sbjct: 63 KAIALLQIPKEH 74
>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 209
Score = 33.4 bits (75), Expect = 0.055
Identities = 10/64 (15%), Positives = 22/64 (34%), Gaps = 2/64 (3%)
Query: 407 KQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLC 466
++G + GV+ GKST K+ L + + L ++++
Sbjct: 1 RRGA-LI-VLEGVDRAGKSTQSRKLVEALCAAGHRAELLRFPERSTEIGKLLSSYLQKKS 58
Query: 467 SLHP 470
+
Sbjct: 59 DVED 62
>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga
maritima [TaxId: 2336]}
Length = 238
Score = 33.4 bits (76), Expect = 0.062
Identities = 20/131 (15%), Positives = 40/131 (30%), Gaps = 4/131 (3%)
Query: 413 VMAFCGVNGVGKSTNLAKICFWLIENNLNVLIA-ACDTFRAGAVEQLRTHVRHLCSLHPA 471
+ G NG GK+T L I + ++ V + V +L +++ +
Sbjct: 30 IFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYR- 88
Query: 472 AKHGGREMVQLFEKGYGKDPAEIAFRAISHARDMHIDVVLIDTAGRMQDNEPLMRALAKL 531
G E ++ Y +EI + + D +A+
Sbjct: 89 -NMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIAR- 146
Query: 532 VKVNQPDLLLF 542
+ P L +
Sbjct: 147 ALMVNPRLAIL 157
>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum
aerophilum [TaxId: 13773]}
Length = 276
Score = 33.2 bits (74), Expect = 0.085
Identities = 15/148 (10%), Positives = 47/148 (31%), Gaps = 2/148 (1%)
Query: 393 KRRVDILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRA 452
++ +L + L P G G GK+ + + L ++ + F
Sbjct: 26 QQLDILLGNWLRNPGHHYPRAT-LLGRPGTGKTV-TLRKLWELYKDKTTARFVYINGFIY 83
Query: 453 GAVEQLRTHVRHLCSLHPAAKHGGREMVQLFEKGYGKDPAEIAFRAISHARDMHIDVVLI 512
+ + ++ + R+ + ++ F + A ++ D++
Sbjct: 84 RNFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILST 143
Query: 513 DTAGRMQDNEPLMRALAKLVKVNQPDLL 540
+ ++ +A ++ + +L
Sbjct: 144 FIRLGQEADKLGAFRIALVIVGHNDAVL 171
>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 286
Score = 32.5 bits (73), Expect = 0.12
Identities = 14/61 (22%), Positives = 24/61 (39%), Gaps = 6/61 (9%)
Query: 396 VDILRDALEAKKQG---RPFVMAFCGVNGVGKSTNLAKICFWLIE---NNLNVLIAACDT 449
++ L + + P + F G G GKS +I L+E ++ A+ D
Sbjct: 9 IEFLDKYIPEWFETGNKCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDD 68
Query: 450 F 450
F
Sbjct: 69 F 69
>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS
kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}
Length = 208
Score = 32.1 bits (72), Expect = 0.13
Identities = 11/58 (18%), Positives = 22/58 (37%), Gaps = 1/58 (1%)
Query: 397 DILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIEN-NLNVLIAACDTFRAG 453
+ R + R + G++ GKST ++ L+ + ++ D R G
Sbjct: 10 ALTRSERTELRNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIRFG 67
>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide
biosynthesis protein MobB {Escherichia coli [TaxId:
562]}
Length = 170
Score = 31.5 bits (70), Expect = 0.18
Identities = 12/115 (10%), Positives = 35/115 (30%), Gaps = 3/115 (2%)
Query: 413 VMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHL-CSLHPA 471
++AF +G GK+T L K+ L + + + +
Sbjct: 4 LLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHDMDVDKPGKDSYELRKAGAAQT 63
Query: 472 AKHGGREMVQLFEKGYGKDPAEIAFRAISHARDMHIDVVLIDTAGRMQDNEPLMR 526
+ + E ++ + +D++L++ + + ++
Sbjct: 64 IVASQQRWALMTETPDEEELDLQFLAS--RMDTSKLDLILVEGFKHEEIAKIVLF 116
>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 197
Score = 31.5 bits (70), Expect = 0.22
Identities = 14/116 (12%), Positives = 29/116 (25%), Gaps = 2/116 (1%)
Query: 410 RPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLH 469
+PF + G G GK+T L + N++ +L + +R L +
Sbjct: 8 QPFTVLIEGNIGSGKTTYLNHFEKYK--NDICLLTEPVEKWRNVNGVNLLELMYKDPKKW 65
Query: 470 PAAKHGGREMVQLFEKGYGKDPAEIAFRAISHARDMHIDVVLIDTAGRMQDNEPLM 525
+ L + + + Q +
Sbjct: 66 AMPFQSYVTLTMLQSHTAPTNKKLKIMERSIFSARYCFVENMRRNGSLEQGMYNTL 121
>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli
[TaxId: 562]}
Length = 308
Score = 31.6 bits (71), Expect = 0.23
Identities = 26/167 (15%), Positives = 49/167 (29%), Gaps = 23/167 (13%)
Query: 393 KRRVDILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWL--IENNLNVLIAACDTF 450
RR +L L Q P++++ G VGKST + L + V + D F
Sbjct: 62 LRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGF 121
Query: 451 --------------RAGAVEQLRTHVRHLCSLHPAAKHGGREMVQLFEKGYGKDPAEIAF 496
+ G E + L K G + D
Sbjct: 122 LHPNQVLKERGLMKKKGFPE--SYDMHRLVKFVSDLKSGVPNVTAPVYSHLIYDVIPDGD 179
Query: 497 RAISHARDMHIDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFV 543
+ + D+++++ +Q + + D ++V
Sbjct: 180 KTVVQP-----DILILEGLNVLQSGMDYPHDPHHVFVSDFVDFSIYV 221
>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium
pasteurianum [TaxId: 1501]}
Length = 269
Score = 31.4 bits (70), Expect = 0.30
Identities = 25/129 (19%), Positives = 42/129 (32%), Gaps = 21/129 (16%)
Query: 413 VMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHPAA 472
+A G G+GKST + L +++ CD +A + L + L
Sbjct: 3 QVAIYGKGGIGKSTTTQNLTSGLHAMGKTIMVVGCD-PKADSTRLLLGGLAQKSVLDTLR 61
Query: 473 KHG-----------GREMVQLFEKGYGKDPAEIAFRAISHARDM---------HIDVVLI 512
+ G G ++ E G + A R I + +M +D V
Sbjct: 62 EEGEDVELDSILKEGYGGIRCVESGGPEPGVGCAGRGIITSINMLEQLGAYTDDLDYVFY 121
Query: 513 DTAGRMQDN 521
D G +
Sbjct: 122 DVLGDVVCG 130
>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 208
Score = 30.8 bits (68), Expect = 0.32
Identities = 9/30 (30%), Positives = 13/30 (43%)
Query: 415 AFCGVNGVGKSTNLAKICFWLIENNLNVLI 444
A GV+G GK T + K+ +V
Sbjct: 4 AIEGVDGAGKRTLVEKLSGAFRAAGRSVAT 33
>d1g5ba_ d.159.1.3 (A:) lambda ser/thr protein phosphatase
{Bacteriophage lambda [TaxId: 10710]}
Length = 219
Score = 31.0 bits (69), Expect = 0.35
Identities = 10/50 (20%), Positives = 20/50 (40%)
Query: 522 EPLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQLVKFNNAMADHSLSDN 571
LM L + N+ DLL+ VG+ + + ++ ++ N
Sbjct: 26 TNLMNKLDTIGFDNKKDLLISVGDLVDRGAENVECLELITFPWFRAVRGN 75
>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter
MsbA, C-terminal domain {Salmonella typhimurium [TaxId:
90371]}
Length = 253
Score = 30.6 bits (69), Expect = 0.47
Identities = 23/109 (21%), Positives = 40/109 (36%), Gaps = 6/109 (5%)
Query: 392 PKRRVDILRDA-LEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTF 450
P R V LR+ L+ G+ +A G +G GKST +A + + + ++
Sbjct: 24 PGREVPALRNINLKIPA-GK--TVALVGRSGSGKST-IASLITRFYDIDEGHILMDGHDL 79
Query: 451 RAGAVEQLRTHVRHLCSLHPAAKHGGREMVQLFE-KGYGKDPAEIAFRA 498
R + LR V + + + Y ++ E A R
Sbjct: 80 REYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARM 128
>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 214
Score = 29.5 bits (65), Expect = 0.87
Identities = 8/30 (26%), Positives = 14/30 (46%)
Query: 409 GRPFVMAFCGVNGVGKSTNLAKICFWLIEN 438
GR ++ G++ GK+T + L N
Sbjct: 1 GRGKLILIEGLDRTGKTTQCNILYKKLQPN 30
>g1f2t.1 c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furiosus
[TaxId: 2261]}
Length = 292
Score = 29.7 bits (65), Expect = 0.88
Identities = 9/26 (34%), Positives = 12/26 (46%)
Query: 410 RPFVMAFCGVNGVGKSTNLAKICFWL 435
+ + G NG GKS+ L I L
Sbjct: 22 KEGINLIIGQNGSGKSSLLDAILVGL 47
>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId:
562]}
Length = 210
Score = 29.5 bits (65), Expect = 0.91
Identities = 6/30 (20%), Positives = 13/30 (43%)
Query: 415 AFCGVNGVGKSTNLAKICFWLIENNLNVLI 444
G+ G GK+T + L + + ++
Sbjct: 6 VIEGLEGAGKTTARNVVVETLEQLGIRDMV 35
>g1ii8.1 c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furiosus
[TaxId: 2261]}
Length = 369
Score = 29.8 bits (65), Expect = 0.91
Identities = 9/21 (42%), Positives = 10/21 (47%)
Query: 415 AFCGVNGVGKSTNLAKICFWL 435
G NG GKS+ L I L
Sbjct: 27 LIIGQNGSGKSSLLDAILVGL 47
>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 400
Score = 29.7 bits (66), Expect = 1.0
Identities = 21/147 (14%), Positives = 40/147 (27%), Gaps = 19/147 (12%)
Query: 396 VDILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAV 455
+ DAL+ +A G G GKS+ I + + G V
Sbjct: 42 NSAISDALKEIDSS-VLNVAVTGETGSGKSS--------FINTLRGIGNEEEGAAKTGVV 92
Query: 456 EQLRTHVRHLCSLHPAAKHGGREMVQLFEKGYGKDPAEIAFRAISHARDMHIDVVLIDTA 515
E + +V G G + + D +I +A
Sbjct: 93 EVTMERHPYKHP-------NIPNVVFWDLPGIGSTNFPPD-TYLEKMKFYEYDFFIIISA 144
Query: 516 GRMQDNEPLMRALAKLVKVNQPDLLLF 542
R + N+ + + + + +
Sbjct: 145 TRFKKND--IDIAKAISMMKKEFYFVR 169
>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS
kinase) {Human (Homo sapiens) [TaxId: 9606]}
Length = 195
Score = 29.3 bits (64), Expect = 1.1
Identities = 12/55 (21%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
Query: 400 RDALEAKKQG-RPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAG 453
R + + G R + G++G GK+T + +L+ + + D R G
Sbjct: 7 RGQVVGTRGGFRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQG 61
>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA
{Escherichia coli [TaxId: 562]}
Length = 296
Score = 29.2 bits (64), Expect = 1.3
Identities = 13/41 (31%), Positives = 18/41 (43%)
Query: 408 QGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACD 448
Q P + F G GVGK++ L E VL+ + D
Sbjct: 5 QNIPPYLFFTGKGGVGKTSISCATAIRLAEQGKRVLLVSTD 45
>d1hx0a2 c.1.8.1 (A:1-403) Animal alpha-amylase {Pig (Sus scrofa)
[TaxId: 9823]}
Length = 403
Score = 29.5 bits (65), Expect = 1.4
Identities = 9/43 (20%), Positives = 15/43 (34%), Gaps = 4/43 (9%)
Query: 470 PAAKHGGREMVQLFEKGYGKDPAEIAFRAISHARDMHIDVVLI 512
P + G +V LFE + +IA + V +
Sbjct: 4 PQTQSGRTSIVHLFEWRW----VDIALECERYLGPKGFGGVQV 42
>d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter
vinelandii [TaxId: 354]}
Length = 289
Score = 28.7 bits (63), Expect = 1.8
Identities = 13/36 (36%), Positives = 16/36 (44%)
Query: 413 VMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACD 448
A G G+GKST + L E V+I CD
Sbjct: 4 QCAIYGKGGIGKSTTTQNLVAALAEMGKKVMIVGCD 39
>d1yira1 c.1.17.2 (A:145-399) Nicotinate phosphoribosyltransferase,
C-terminal domain {Pseudomonas aeruginosa [TaxId: 287]}
Length = 255
Score = 28.4 bits (63), Expect = 2.1
Identities = 22/140 (15%), Positives = 42/140 (30%), Gaps = 17/140 (12%)
Query: 412 FVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHPA 471
++MA + + A + W+ E + IA D LR + L
Sbjct: 84 WLMAHQQLGPRLIDSQSAALDCWVREYRGLLGIALTDCI--TTDAFLRDFDLYFAKLFDG 141
Query: 472 AKHGGREMVQLFEKGYGKDPAEIAFRAISHARDMHID-VVLIDTAGRMQDNEPLMRALAK 530
+H DP A + I+H + ID + D ++
Sbjct: 142 LRHD------------SGDPLLWAEKTIAHYLKLGIDPLTKTLVFSDGLDLPRALKIYRA 189
Query: 531 LVKVNQPDLLLFVGEALVGN 550
L + ++ +G +
Sbjct: 190 L--QGRINVSFGIGTHFTCD 207
>d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon
Archaeoglobus fulgidus [TaxId: 2234]}
Length = 232
Score = 28.2 bits (61), Expect = 2.4
Identities = 15/101 (14%), Positives = 25/101 (24%)
Query: 421 GVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHPAAKHGGREMV 480
G GK+T A + L + +V I D A L + + A +
Sbjct: 12 GTGKTTITANLGVALAQLGHDVTIVDADITMANLELILGMEGLPVTLQNVLAGEARIDEA 71
Query: 481 QLFEKGYGKDPAEIAFRAISHARDMHIDVVLIDTAGRMQDN 521
G K + ++ D
Sbjct: 72 IYVGPGGVKVVPAGVSLEGLRKANPEKLEDVLTQIMESTDI 112
>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK,
N-terminal domain {Archaeon Thermococcus litoralis
[TaxId: 2265]}
Length = 240
Score = 28.0 bits (62), Expect = 3.0
Identities = 25/140 (17%), Positives = 42/140 (30%), Gaps = 17/140 (12%)
Query: 413 VMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLC------ 466
M G +G GK+T L I + + I + R +
Sbjct: 31 FMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSY 90
Query: 467 SLHPAAKHGGREMVQLFEKGYGKDPAEIAFRAISHARDMHIDVVLIDTA----GRMQDNE 522
+L+P + + K EI R A + + +L G +
Sbjct: 91 ALYP--HMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRV 148
Query: 523 PLMRALAKLVKVNQPDLLLF 542
L RA+ V +P + L
Sbjct: 149 ALGRAI-----VRKPQVFLM 163
>d1aopa2 d.58.36.1 (A:346-425) Sulfite reductase, domains 1 and 3
{Escherichia coli [TaxId: 562]}
Length = 80
Score = 26.2 bits (58), Expect = 3.7
Identities = 10/61 (16%), Positives = 22/61 (36%), Gaps = 3/61 (4%)
Query: 515 AGRMQDNE--PLMRALAKLVKVNQPDL-LLFVGEALVGNEAVDQLVKFNNAMADHSLSDN 571
GR+ D PL L ++ K+++ D + ++ + K + L +
Sbjct: 19 NGRILDYPARPLKTGLLEIAKIHKGDFRITANQNLIIAGVPESEKAKIEKIAKESGLMNA 78
Query: 572 P 572
Sbjct: 79 V 79
>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3'
phosphatase, C-terminal domain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 172
Score = 27.5 bits (60), Expect = 3.8
Identities = 8/17 (47%), Positives = 9/17 (52%)
Query: 410 RPFVMAFCGVNGVGKST 426
P V+ G G GKST
Sbjct: 13 NPEVVVAVGFPGAGKST 29
>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA,
C-terminal domain {Lactococcus lactis [TaxId: 1358]}
Length = 242
Score = 27.5 bits (61), Expect = 4.0
Identities = 16/94 (17%), Positives = 32/94 (34%), Gaps = 1/94 (1%)
Query: 413 VMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHPAA 472
++AF G +G GKST + + + + ++E R+ + +
Sbjct: 30 IIAFAGPSGGGKST-IFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGFVSQDSAIM 88
Query: 473 KHGGREMVQLFEKGYGKDPAEIAFRAISHARDMH 506
RE + +G D ++ AR
Sbjct: 89 AGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFV 122
>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter
{Thermotoga maritima, TM1139 [TaxId: 2336]}
Length = 240
Score = 27.6 bits (61), Expect = 4.4
Identities = 21/136 (15%), Positives = 37/136 (27%), Gaps = 12/136 (8%)
Query: 413 VMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHPAA 472
++ G NG GK+T L+ +I + L
Sbjct: 34 IVTLIGANGAGKTT-TLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGIALVPEGRRI 92
Query: 473 KHGGREMVQLFEKGYGKDPAEIAFRAISHARDM------HIDVVLIDTAGRMQDNEPLMR 526
L Y + E R + + + + +G Q + R
Sbjct: 93 FPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGR 152
Query: 527 ALAKLVKVNQPDLLLF 542
AL ++P LL+
Sbjct: 153 ALM-----SRPKLLMM 163
>d1nrja_ d.110.4.4 (A:) Srx domain of the signal recognition
particle receptor alpha-subunit {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 155
Score = 26.9 bits (59), Expect = 5.3
Identities = 10/38 (26%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Query: 1 MLDFFTIFSKGGIVLWYFQSASQIFTPSL-NALIKSVI 37
M D +F+ G VL+ + + F+ N+ I +I
Sbjct: 1 MFDQLAVFTPQGQVLYQYNCLGKKFSEIQINSFISQLI 38
>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 213
Score = 27.2 bits (59), Expect = 5.3
Identities = 13/45 (28%), Positives = 20/45 (44%), Gaps = 5/45 (11%)
Query: 411 PFVMAFCGVNGVGKSTNLAKIC-----FWLIENNLNVLIAACDTF 450
PF++ G GKS+ AKI + V+I + D+F
Sbjct: 2 PFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSF 46
>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 241
Score = 27.3 bits (59), Expect = 5.8
Identities = 8/30 (26%), Positives = 14/30 (46%)
Query: 411 PFVMAFCGVNGVGKSTNLAKICFWLIENNL 440
P ++ G VGKST + + E ++
Sbjct: 2 PRRLSIEGNIAVGKSTFVKLLTKTYPEWHV 31
>d1jqka_ e.26.1.2 (A:) Ni-containing carbon monoxide dehydrogenase
{Rhodospirillum rubrum [TaxId: 1085]}
Length = 610
Score = 27.5 bits (61), Expect = 6.0
Identities = 13/74 (17%), Positives = 25/74 (33%), Gaps = 3/74 (4%)
Query: 383 TDALVQILSPKRRVDILRDALEAKKQG---RPFVMAFCGVNGVGKSTNLAKICFWLIENN 439
+A+V L+ D L+ ++ G + C V + + + L + N
Sbjct: 387 AEAVVAALAKVNADDPLKPLVDNVVNGNIQGIVLFVGCNTTKVQQDSAYVDLAKSLAKRN 446
Query: 440 LNVLIAACDTFRAG 453
+ VL C
Sbjct: 447 VLVLATGCAAGAFA 460
>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter,
ATP-binding protein {Methanosarcina acetivorans [TaxId:
2214]}
Length = 229
Score = 26.9 bits (59), Expect = 6.2
Identities = 12/58 (20%), Positives = 20/58 (34%)
Query: 413 VMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLCSLHP 470
G G GK+ L I + + ++ +L+ D + V SL P
Sbjct: 28 YFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFVYQNYSLFP 85
>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 224
Score = 26.9 bits (58), Expect = 6.3
Identities = 22/119 (18%), Positives = 43/119 (36%), Gaps = 3/119 (2%)
Query: 388 QILSPKRRVDILRDALEAKKQGRPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAAC 447
I+ K +D L+ K G M G+ G+GK+T++ + L+ + +
Sbjct: 16 DIVGNKETIDRLQQIA---KDGNMPHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLEL 72
Query: 448 DTFRAGAVEQLRTHVRHLCSLHPAAKHGGREMVQLFEKGYGKDPAEIAFRAISHARDMH 506
+ ++ +R ++H G ++V L E A+ A R
Sbjct: 73 NASDDRGIDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNS 131
>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides
[TaxId: 1063]}
Length = 288
Score = 27.2 bits (60), Expect = 6.4
Identities = 9/71 (12%), Positives = 18/71 (25%), Gaps = 8/71 (11%)
Query: 410 RPFVMAFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTF--------RAGAVEQLRTH 461
+ +++ G +G G ST + + D F +A +
Sbjct: 3 KHPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFHRFNRADMKAELDRRYAAG 62
Query: 462 VRHLCSLHPAA 472
A
Sbjct: 63 DATFSHFSYEA 73
>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain
{Fungus (Penicillium chrysogenum) [TaxId: 5076]}
Length = 183
Score = 26.6 bits (57), Expect = 6.7
Identities = 5/25 (20%), Positives = 10/25 (40%), Gaps = 1/25 (4%)
Query: 407 KQGRPFVMAFCGVNGVGKSTNLAKI 431
+ + F + G GK +A+
Sbjct: 2 RATQGFTIFLTGYMNSGKDA-IARA 25
>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon
Pyrococcus furiosus [TaxId: 2261]}
Length = 237
Score = 27.0 bits (58), Expect = 6.9
Identities = 11/46 (23%), Positives = 15/46 (32%)
Query: 421 GVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHVRHLC 466
G GK+T A + L + VL D A L +
Sbjct: 13 GTGKTTVTANLSVALGDRGRKVLAVDGDLTMANLSLVLGVDDPDVT 58
>d2vglm2 d.110.4.2 (M:1-141) Mu2 adaptin (clathrin coat assembly
protein AP50) {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 141
Score = 26.4 bits (58), Expect = 7.0
Identities = 25/149 (16%), Positives = 50/149 (33%), Gaps = 13/149 (8%)
Query: 1 MLDFFTIFSKGGIVLWYFQSASQIFTPSLNALIKSVILQERGGNQ-VFEHNGLVLKHKLD 59
M+ I++ G VL I +++A +VI + V H
Sbjct: 1 MIGGLFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFHVKR 60
Query: 60 NEFDLVFVVGFQ--KILQLSYVDKLLDDVHLEFRDKYKNELGSDMHLYDYDFESTYNVLL 117
+ L V + ++ K+ D + F + + ++ L LL
Sbjct: 61 SNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVL--------IYELL 112
Query: 118 KEAEEWSKVQACIPKQMRTF--EESSKSK 144
E ++ Q ++TF ++ KS+
Sbjct: 113 DEILDFGYPQNSETGALKTFITQQGIKSQ 141
>d1e6ia_ a.29.2.1 (A:) GCN5 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 111
Score = 26.1 bits (57), Expect = 7.1
Identities = 13/72 (18%), Positives = 27/72 (37%), Gaps = 1/72 (1%)
Query: 56 HKLDNEFDLVFVVGFQKILQLSYVDKLLDDVHLEFRDKYK-NELGSDMHLYDYDFESTYN 114
+ DL + + + ++ + D L F + N + + Y E +N
Sbjct: 38 DFIKEPMDLSTMEIKLESNKYQKMEDFIYDARLVFNNCRMYNGENTSYYKYANRLEKFFN 97
Query: 115 VLLKEAEEWSKV 126
+KE E+S +
Sbjct: 98 NKVKEIPEYSHL 109
>d1iv8a2 c.1.8.1 (A:1-653) Maltooligosyl trehalose synthase
{Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}
Length = 653
Score = 27.2 bits (60), Expect = 7.6
Identities = 12/69 (17%), Positives = 24/69 (34%), Gaps = 4/69 (5%)
Query: 498 AISHARDMHIDVVLIDTAGRMQDNEPLMRALAKLVKVNQPDLLLFVGEALVGNEAVDQLV 557
+ S D+ +D ID + D E + L ++K + ++ V + L E +
Sbjct: 213 SHSKILDLDVDGYRIDHIDGLYDPEKYINDLRSIIK----NKIIIVEKILGFQEELKLNS 268
Query: 558 KFNNAMADH 566
Sbjct: 269 DGTTGYDFL 277
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.316 0.133 0.373
Gapped
Lambda K H
0.267 0.0367 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,202,991
Number of extensions: 103195
Number of successful extensions: 491
Number of sequences better than 10.0: 1
Number of HSP's gapped: 477
Number of HSP's successfully gapped: 72
Length of query: 630
Length of database: 2,407,596
Length adjustment: 91
Effective length of query: 539
Effective length of database: 1,158,166
Effective search space: 624251474
Effective search space used: 624251474
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (26.3 bits)