Query psy11996
Match_columns 222
No_of_seqs 214 out of 2467
Neff 8.9
Searched_HMMs 29240
Date Fri Aug 16 15:57:57 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11996.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/11996hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2dmu_A Homeobox protein goosec 99.8 5.6E-20 1.9E-24 120.6 8.0 65 6-70 3-67 (70)
2 1nk2_P Homeobox protein VND; h 99.8 1.4E-19 4.9E-24 120.9 9.6 71 3-73 2-72 (77)
3 2dms_A Homeobox protein OTX2; 99.8 1E-19 3.4E-24 122.6 8.9 67 6-72 3-69 (80)
4 2r5y_A Homeotic protein sex co 99.8 1.2E-19 4E-24 124.4 8.6 84 108-194 5-88 (88)
5 2cra_A Homeobox protein HOX-B1 99.8 4E-20 1.4E-24 121.3 5.9 65 6-70 3-67 (70)
6 2cue_A Paired box protein PAX6 99.8 1.4E-19 4.9E-24 121.7 8.7 68 6-73 3-70 (80)
7 2dmq_A LIM/homeobox protein LH 99.8 2.3E-19 7.9E-24 120.8 9.7 67 6-72 3-69 (80)
8 1b72_A Protein (homeobox prote 99.8 3.9E-20 1.3E-24 129.1 6.1 65 132-196 32-96 (97)
9 2e1o_A Homeobox protein PRH; D 99.8 1.6E-19 5.4E-24 118.4 8.1 65 6-70 3-67 (70)
10 2h1k_A IPF-1, pancreatic and d 99.8 1.2E-19 4.1E-24 116.6 7.3 61 9-69 2-62 (63)
11 1nk2_P Homeobox protein VND; h 99.8 3.3E-19 1.1E-23 119.1 9.6 71 131-201 6-76 (77)
12 2da1_A Alpha-fetoprotein enhan 99.8 6.3E-20 2.2E-24 120.4 5.6 65 6-70 3-67 (70)
13 1puf_A HOX-1.7, homeobox prote 99.8 3.7E-19 1.3E-23 118.9 9.4 68 5-72 8-75 (77)
14 2da2_A Alpha-fetoprotein enhan 99.8 7.8E-20 2.7E-24 120.0 6.0 65 5-69 2-66 (70)
15 2dmt_A Homeobox protein BARH-l 99.8 9.9E-20 3.4E-24 122.5 6.3 65 6-70 13-77 (80)
16 2m0c_A Homeobox protein arista 99.8 1.2E-19 4.3E-24 120.6 6.6 70 2-71 1-70 (75)
17 2djn_A Homeobox protein DLX-5; 99.8 7.7E-20 2.6E-24 120.0 5.2 65 5-69 2-66 (70)
18 2hdd_A Protein (engrailed home 99.8 1.9E-19 6.3E-24 114.9 6.6 58 10-67 3-60 (61)
19 1ig7_A Homeotic protein MSX-1; 99.8 3.2E-19 1.1E-23 112.7 7.6 57 11-67 1-57 (58)
20 2dmu_A Homeobox protein goosec 99.8 3.9E-19 1.3E-23 116.6 8.3 65 131-195 4-68 (70)
21 1zq3_P PRD-4, homeotic bicoid 99.8 4.6E-19 1.6E-23 115.5 8.5 63 10-72 2-64 (68)
22 2dmt_A Homeobox protein BARH-l 99.8 3.9E-19 1.3E-23 119.6 8.1 65 131-195 14-78 (80)
23 1b8i_A Ultrabithorax, protein 99.8 1.9E-19 6.7E-24 121.3 6.5 65 5-69 15-79 (81)
24 2vi6_A Homeobox protein nanog; 99.8 1.4E-19 4.8E-24 115.9 5.4 60 9-68 2-61 (62)
25 2cra_A Homeobox protein HOX-B1 99.8 3.4E-19 1.2E-23 116.9 7.3 65 131-195 4-68 (70)
26 2dms_A Homeobox protein OTX2; 99.8 8.2E-19 2.8E-23 118.0 9.4 70 132-201 5-74 (80)
27 2h1k_A IPF-1, pancreatic and d 99.8 4.2E-19 1.4E-23 114.0 7.3 61 133-193 2-62 (63)
28 2da3_A Alpha-fetoprotein enhan 99.8 1.5E-19 5.2E-24 121.7 5.5 65 5-69 12-76 (80)
29 1wh5_A ZF-HD homeobox family p 99.8 2.7E-19 9.3E-24 120.1 6.7 62 6-67 13-78 (80)
30 2dmq_A LIM/homeobox protein LH 99.8 1.1E-18 3.7E-23 117.5 9.7 70 132-201 5-74 (80)
31 2da2_A Alpha-fetoprotein enhan 99.8 3.9E-19 1.3E-23 116.6 7.3 65 131-195 4-68 (70)
32 2kt0_A Nanog, homeobox protein 99.8 5.6E-19 1.9E-23 120.0 8.2 65 130-194 18-82 (84)
33 2e1o_A Homeobox protein PRH; D 99.8 8.1E-19 2.8E-23 115.1 8.7 64 132-195 5-68 (70)
34 1ftt_A TTF-1 HD, thyroid trans 99.8 4.6E-19 1.6E-23 115.5 7.3 63 10-72 2-64 (68)
35 1ahd_P Antennapedia protein mu 99.8 3E-19 1E-23 116.4 6.4 62 10-71 2-63 (68)
36 1yz8_P Pituitary homeobox 2; D 99.8 1.8E-19 6.3E-24 117.5 5.3 63 9-71 2-64 (68)
37 1jgg_A Segmentation protein EV 99.8 4.6E-19 1.6E-23 112.7 7.0 58 11-68 2-59 (60)
38 2kt0_A Nanog, homeobox protein 99.8 2.5E-19 8.4E-24 121.8 5.9 66 5-70 17-82 (84)
39 2m0c_A Homeobox protein arista 99.8 5.4E-19 1.8E-23 117.5 7.5 69 130-198 5-73 (75)
40 2r5y_A Homeotic protein sex co 99.8 2.7E-19 9.2E-24 122.6 6.1 65 5-69 23-87 (88)
41 2cue_A Paired box protein PAX6 99.8 8.7E-19 3E-23 117.9 8.5 67 131-197 4-70 (80)
42 2vi6_A Homeobox protein nanog; 99.8 3.3E-19 1.1E-23 114.2 6.1 60 133-192 2-61 (62)
43 2djn_A Homeobox protein DLX-5; 99.8 4.8E-19 1.6E-23 116.1 6.9 65 131-195 4-68 (70)
44 1fjl_A Paired protein; DNA-bin 99.8 8.3E-19 2.8E-23 118.3 8.2 65 6-70 14-78 (81)
45 2l7z_A Homeobox protein HOX-A1 99.8 4.6E-19 1.6E-23 117.1 6.6 63 7-69 4-66 (73)
46 2da4_A Hypothetical protein DK 99.8 5E-19 1.7E-23 119.1 6.7 65 5-69 3-71 (80)
47 2da1_A Alpha-fetoprotein enhan 99.8 5E-19 1.7E-23 116.1 6.5 65 131-195 4-68 (70)
48 1yz8_P Pituitary homeobox 2; D 99.8 4.1E-19 1.4E-23 115.8 6.0 65 133-197 2-66 (68)
49 2da3_A Alpha-fetoprotein enhan 99.8 7.2E-19 2.4E-23 118.4 7.0 65 131-195 14-78 (80)
50 2ecc_A Homeobox and leucine zi 99.8 1.3E-18 4.3E-23 114.5 8.0 57 136-192 5-61 (76)
51 1ig7_A Homeotic protein MSX-1; 99.8 1.3E-18 4.3E-23 109.9 7.7 57 135-191 1-57 (58)
52 1bw5_A ISL-1HD, insulin gene e 99.8 4.5E-19 1.5E-23 114.9 5.8 60 9-68 2-61 (66)
53 1ftt_A TTF-1 HD, thyroid trans 99.8 1.3E-18 4.5E-23 113.4 7.9 65 134-198 2-66 (68)
54 2hdd_A Protein (engrailed home 99.8 8.7E-19 3E-23 111.8 6.7 58 134-191 3-60 (61)
55 1puf_A HOX-1.7, homeobox prote 99.8 2E-18 6.7E-23 115.3 8.7 65 131-195 10-74 (77)
56 3a01_A Homeodomain-containing 99.8 1.7E-18 5.8E-23 119.7 8.5 67 6-72 13-79 (93)
57 1uhs_A HOP, homeodomain only p 99.8 1.6E-18 5.5E-23 114.2 8.0 60 11-70 2-62 (72)
58 1ahd_P Antennapedia protein mu 99.8 1.1E-18 3.8E-23 113.7 7.1 64 134-197 2-65 (68)
59 3rkq_A Homeobox protein NKX-2. 99.8 1.1E-18 3.9E-23 110.1 6.7 57 10-66 2-58 (58)
60 2k40_A Homeobox expressed in E 99.8 8.5E-19 2.9E-23 114.0 6.2 61 10-70 1-61 (67)
61 1wh7_A ZF-HD homeobox family p 99.8 6.5E-19 2.2E-23 118.0 5.5 62 5-67 12-78 (80)
62 2ecc_A Homeobox and leucine zi 99.8 2.3E-18 7.9E-23 113.3 7.9 57 12-68 5-61 (76)
63 1jgg_A Segmentation protein EV 99.8 1.7E-18 5.7E-23 110.1 7.1 58 135-192 2-59 (60)
64 3a02_A Homeobox protein arista 99.8 9.9E-19 3.4E-23 111.2 6.0 58 137-194 2-59 (60)
65 1akh_A Protein (mating-type pr 99.8 9E-19 3.1E-23 111.8 5.8 59 8-66 3-61 (61)
66 2hi3_A Homeodomain-only protei 99.8 2.9E-18 1E-22 113.3 8.3 61 10-70 2-63 (73)
67 1b72_A Protein (homeobox prote 99.8 1.5E-18 5.3E-23 120.9 7.4 64 8-71 32-95 (97)
68 3a02_A Homeobox protein arista 99.8 1E-18 3.5E-23 111.1 5.8 58 13-70 2-59 (60)
69 1zq3_P PRD-4, homeotic bicoid 99.8 3.3E-18 1.1E-22 111.4 8.4 63 134-196 2-64 (68)
70 2cuf_A FLJ21616 protein; homeo 99.8 3.1E-18 1.1E-22 118.9 8.7 67 6-72 3-84 (95)
71 2da5_A Zinc fingers and homeob 99.8 3.3E-18 1.1E-22 113.6 8.3 61 10-70 7-67 (75)
72 1fjl_A Paired protein; DNA-bin 99.8 2.6E-18 8.8E-23 115.9 7.8 65 131-195 15-79 (81)
73 1b8i_A Ultrabithorax, protein 99.8 1.9E-18 6.5E-23 116.4 7.1 64 131-194 17-80 (81)
74 1uhs_A HOP, homeodomain only p 99.8 4.5E-18 1.5E-22 112.1 8.7 63 135-197 2-65 (72)
75 1wi3_A DNA-binding protein SAT 99.7 2.6E-18 9E-23 108.7 7.1 60 6-65 3-63 (71)
76 3a01_A Homeodomain-containing 99.7 4.3E-18 1.5E-22 117.6 8.9 67 131-197 14-80 (93)
77 2dn0_A Zinc fingers and homeob 99.7 1.1E-18 3.8E-23 116.2 5.7 65 7-71 5-69 (76)
78 2k40_A Homeobox expressed in E 99.7 2.3E-18 7.8E-23 111.9 7.0 62 135-196 2-63 (67)
79 2hi3_A Homeodomain-only protei 99.7 5.6E-18 1.9E-22 111.9 8.9 63 135-197 3-66 (73)
80 1wh5_A ZF-HD homeobox family p 99.7 2.7E-18 9.2E-23 115.2 7.4 61 131-191 14-78 (80)
81 1bw5_A ISL-1HD, insulin gene e 99.7 1.5E-18 5.1E-23 112.5 6.0 60 134-193 3-62 (66)
82 2l7z_A Homeobox protein HOX-A1 99.7 3.6E-18 1.2E-22 112.8 7.9 64 132-195 5-68 (73)
83 1x2n_A Homeobox protein pknox1 99.7 4.6E-18 1.6E-22 112.4 8.1 65 6-70 3-70 (73)
84 3a03_A T-cell leukemia homeobo 99.7 3.1E-18 1E-22 107.3 6.9 54 15-68 2-55 (56)
85 2ecb_A Zinc fingers and homeob 99.7 1.1E-17 3.7E-22 113.9 10.0 64 140-203 17-80 (89)
86 2ecb_A Zinc fingers and homeob 99.7 6E-18 2.1E-22 115.1 8.6 59 15-73 16-74 (89)
87 3a03_A T-cell leukemia homeobo 99.7 3.7E-18 1.3E-22 106.9 6.7 54 139-192 2-55 (56)
88 2dmn_A Homeobox protein TGIF2L 99.7 1.1E-17 3.7E-22 113.2 9.4 68 6-73 3-73 (83)
89 2ly9_A Zinc fingers and homeob 99.7 2.9E-18 9.8E-23 113.7 6.5 63 9-71 5-67 (74)
90 2ly9_A Zinc fingers and homeob 99.7 4.9E-18 1.7E-22 112.5 7.4 66 134-199 6-71 (74)
91 2da4_A Hypothetical protein DK 99.7 3.8E-18 1.3E-22 114.8 6.7 63 131-193 5-71 (80)
92 2dn0_A Zinc fingers and homeob 99.7 3.9E-18 1.3E-22 113.6 6.7 64 135-198 9-72 (76)
93 3rkq_A Homeobox protein NKX-2. 99.7 6.2E-18 2.1E-22 106.7 6.9 57 134-190 2-58 (58)
94 1akh_A Protein (mating-type pr 99.7 4.1E-18 1.4E-22 108.7 5.9 59 132-190 3-61 (61)
95 1wh7_A ZF-HD homeobox family p 99.7 5.4E-18 1.9E-22 113.5 6.5 60 131-191 14-78 (80)
96 2da5_A Zinc fingers and homeob 99.7 1.5E-17 5.1E-22 110.4 8.5 60 136-195 9-68 (75)
97 1puf_B PRE-B-cell leukemia tra 99.7 9.9E-18 3.4E-22 110.8 7.4 61 10-70 1-64 (73)
98 2cuf_A FLJ21616 protein; homeo 99.7 2.1E-17 7.2E-22 114.7 9.2 65 132-196 5-84 (95)
99 2da6_A Hepatocyte nuclear fact 99.7 3.1E-17 1.1E-21 113.6 9.7 66 7-72 3-89 (102)
100 1b72_B Protein (PBX1); homeodo 99.7 4.8E-18 1.6E-22 116.1 5.2 63 10-72 1-66 (87)
101 1du6_A PBX1, homeobox protein 99.7 4.4E-18 1.5E-22 109.6 4.6 59 9-67 2-63 (64)
102 3nar_A ZHX1, zinc fingers and 99.7 1E-17 3.4E-22 116.5 6.6 62 132-193 23-84 (96)
103 1x2n_A Homeobox protein pknox1 99.7 2.7E-17 9.1E-22 108.7 8.2 64 132-195 5-71 (73)
104 3nau_A Zinc fingers and homeob 99.7 1.5E-17 5.2E-22 105.6 6.5 53 141-193 11-63 (66)
105 1puf_B PRE-B-cell leukemia tra 99.7 2.7E-17 9.4E-22 108.6 7.8 62 135-196 2-66 (73)
106 3nar_A ZHX1, zinc fingers and 99.7 1.2E-17 4.2E-22 116.1 6.3 63 6-68 21-83 (96)
107 1k61_A Mating-type protein alp 99.7 1.9E-17 6.6E-22 105.2 6.6 55 13-67 1-58 (60)
108 2da6_A Hepatocyte nuclear fact 99.7 7.1E-17 2.4E-21 111.8 9.3 73 131-204 3-96 (102)
109 2l9r_A Homeobox protein NKX-3. 99.7 1.9E-17 6.4E-22 107.5 5.9 60 139-198 9-68 (69)
110 1du6_A PBX1, homeobox protein 99.7 1.5E-17 5.1E-22 107.1 5.3 59 133-191 2-63 (64)
111 2dmn_A Homeobox protein TGIF2L 99.7 7.6E-17 2.6E-21 109.0 9.0 68 132-199 5-75 (83)
112 1k61_A Mating-type protein alp 99.7 3.7E-17 1.3E-21 103.8 6.7 55 138-192 2-59 (60)
113 2dmp_A Zinc fingers and homeob 99.7 1.3E-16 4.4E-21 109.2 9.7 65 138-202 17-81 (89)
114 3nau_A Zinc fingers and homeob 99.7 3.4E-17 1.2E-21 104.0 6.2 52 17-68 11-62 (66)
115 1b72_B Protein (PBX1); homeodo 99.7 6.7E-17 2.3E-21 110.4 7.5 62 135-196 2-66 (87)
116 2xsd_C POU domain, class 3, tr 99.7 1.5E-17 5.2E-22 126.4 4.6 65 6-70 95-159 (164)
117 1wi3_A DNA-binding protein SAT 99.7 8.3E-17 2.9E-21 101.8 7.2 59 132-190 5-64 (71)
118 1mnm_C Protein (MAT alpha-2 tr 99.7 6.9E-17 2.4E-21 110.3 7.2 59 8-66 25-86 (87)
119 2dmp_A Zinc fingers and homeob 99.7 1.5E-16 5.2E-21 108.9 8.5 60 13-72 16-75 (89)
120 1le8_B Mating-type protein alp 99.7 4E-17 1.4E-21 110.4 5.4 59 11-69 3-64 (83)
121 1au7_A Protein PIT-1, GHF-1; c 99.7 3.8E-17 1.3E-21 122.1 5.2 63 6-68 83-145 (146)
122 1lfb_A Liver transcription fac 99.7 2.8E-17 9.5E-22 114.3 4.2 65 5-69 4-89 (99)
123 2cqx_A LAG1 longevity assuranc 99.7 2.3E-17 7.8E-22 108.4 3.5 60 9-68 7-67 (72)
124 2l9r_A Homeobox protein NKX-3. 99.7 4E-17 1.4E-21 106.0 4.5 56 15-70 9-64 (69)
125 2cqx_A LAG1 longevity assuranc 99.7 4.4E-17 1.5E-21 107.0 3.6 59 135-193 9-68 (72)
126 1mnm_C Protein (MAT alpha-2 tr 99.7 2.2E-16 7.4E-21 107.8 7.2 58 133-190 26-86 (87)
127 3d1n_I POU domain, class 6, tr 99.7 1.5E-16 5.3E-21 119.5 7.0 62 6-67 89-150 (151)
128 2e19_A Transcription factor 8; 99.7 1.8E-16 6.3E-21 101.6 6.3 54 138-191 7-60 (64)
129 1e3o_C Octamer-binding transcr 99.7 1.1E-16 3.8E-21 121.4 6.0 61 8-68 99-159 (160)
130 2xsd_C POU domain, class 3, tr 99.6 1.1E-16 3.6E-21 121.8 5.7 67 131-197 96-162 (164)
131 1le8_B Mating-type protein alp 99.6 2.3E-16 8E-21 106.6 6.6 60 136-195 4-66 (83)
132 1au7_A Protein PIT-1, GHF-1; c 99.6 1.7E-16 5.8E-21 118.5 6.0 62 131-192 84-145 (146)
133 1lfb_A Liver transcription fac 99.6 1.5E-16 5.1E-21 110.6 5.3 66 131-196 6-92 (99)
134 2e19_A Transcription factor 8; 99.6 2.9E-16 9.9E-21 100.7 5.6 54 14-67 7-60 (64)
135 1e3o_C Octamer-binding transcr 99.6 2.5E-16 8.4E-21 119.5 6.1 61 132-192 99-159 (160)
136 1x2m_A LAG1 longevity assuranc 99.6 2.1E-16 7.2E-21 100.5 4.5 50 143-192 9-59 (64)
137 3d1n_I POU domain, class 6, tr 99.6 5.1E-16 1.7E-20 116.7 7.3 60 132-191 91-150 (151)
138 3l1p_A POU domain, class 5, tr 99.6 3.9E-16 1.3E-20 117.7 6.3 60 8-67 94-153 (155)
139 1x2m_A LAG1 longevity assuranc 99.6 3.3E-16 1.1E-20 99.6 4.0 49 19-67 9-58 (64)
140 2d5v_A Hepatocyte nuclear fact 99.6 3.6E-16 1.2E-20 119.1 4.7 64 7-70 94-157 (164)
141 3l1p_A POU domain, class 5, tr 99.6 1.4E-15 4.6E-20 114.8 7.0 61 132-192 94-154 (155)
142 3k2a_A Homeobox protein MEIS2; 99.6 2.4E-15 8.2E-20 97.4 5.8 56 140-195 4-62 (67)
143 2d5v_A Hepatocyte nuclear fact 99.6 2.2E-15 7.4E-20 114.8 5.4 66 131-196 94-159 (164)
144 3k2a_A Homeobox protein MEIS2; 99.6 4.5E-15 1.6E-19 96.1 6.0 54 16-69 4-60 (67)
145 2da7_A Zinc finger homeobox pr 99.5 2.4E-14 8.1E-19 91.3 5.4 45 143-187 14-58 (71)
146 2lk2_A Homeobox protein TGIF1; 99.5 9.8E-14 3.4E-18 93.6 8.3 63 15-77 10-75 (89)
147 2lk2_A Homeobox protein TGIF1; 99.5 1.7E-13 5.8E-18 92.5 8.3 59 139-197 10-71 (89)
148 2da7_A Zinc finger homeobox pr 99.5 6.7E-14 2.3E-18 89.2 5.7 46 19-64 14-59 (71)
149 1ic8_A Hepatocyte nuclear fact 99.5 1.7E-14 5.8E-19 111.9 2.6 59 8-66 113-192 (194)
150 2h8r_A Hepatocyte nuclear fact 99.4 2.1E-13 7.1E-18 106.9 6.1 58 7-64 139-217 (221)
151 1ic8_A Hepatocyte nuclear fact 99.4 7.7E-14 2.6E-18 108.2 3.1 61 131-191 112-193 (194)
152 2h8r_A Hepatocyte nuclear fact 99.3 1.6E-12 5.6E-17 101.8 6.2 59 131-189 139-218 (221)
153 1mh3_A Maltose binding-A1 home 99.2 1.9E-11 6.4E-16 105.6 4.7 55 136-190 367-421 (421)
154 1mh3_A Maltose binding-A1 home 99.1 2E-11 6.9E-16 105.4 4.2 56 11-66 366-421 (421)
155 2nzz_A Penetratin conjugated G 98.5 8.5E-09 2.9E-13 57.5 -0.8 25 176-200 1-25 (37)
156 2nzz_A Penetratin conjugated G 98.4 4.1E-08 1.4E-12 54.8 -0.3 21 52-72 1-21 (37)
157 2ys9_A Homeobox and leucine zi 96.8 0.0015 5.1E-08 41.3 4.2 39 146-184 18-56 (70)
158 2ys9_A Homeobox and leucine zi 96.7 0.0018 6.2E-08 40.9 4.1 41 20-60 16-56 (70)
159 1u78_A TC3 transposase, transp 91.1 2.9 9.8E-05 29.2 10.3 40 15-59 5-44 (141)
160 2k27_A Paired box protein PAX- 90.1 4.1 0.00014 29.4 12.7 41 15-60 24-64 (159)
161 1pdn_C Protein (PRD paired); p 87.8 4.8 0.00016 27.3 11.0 40 15-59 16-55 (128)
162 2glo_A Brinker CG9653-PA; prot 85.9 1.2 4.3E-05 26.5 4.3 46 14-60 3-48 (59)
163 2elh_A CG11849-PA, LD40883P; s 85.5 2.4 8.4E-05 27.5 6.0 45 10-59 16-60 (87)
164 2glo_A Brinker CG9653-PA; prot 84.7 1.6 5.6E-05 26.0 4.4 46 138-184 3-48 (59)
165 1k78_A Paired box protein PAX5 84.0 9.2 0.00031 27.0 13.0 40 15-59 31-70 (149)
166 1hlv_A CENP-B, major centromer 79.3 13 0.00044 25.6 12.2 50 12-64 3-52 (131)
167 3hug_A RNA polymerase sigma fa 77.7 5 0.00017 26.1 5.2 50 140-194 37-86 (92)
168 1jko_C HIN recombinase, DNA-in 77.0 1.7 5.9E-05 24.4 2.5 42 140-186 5-46 (52)
169 2o8x_A Probable RNA polymerase 75.7 5 0.00017 24.2 4.6 48 140-192 15-62 (70)
170 1tc3_C Protein (TC3 transposas 75.4 6.7 0.00023 21.4 4.8 40 140-184 5-44 (51)
171 1hlv_A CENP-B, major centromer 75.3 8.1 0.00028 26.6 6.2 49 137-188 4-52 (131)
172 1jko_C HIN recombinase, DNA-in 74.7 2.4 8.3E-05 23.7 2.7 42 16-62 5-46 (52)
173 2elh_A CG11849-PA, LD40883P; s 74.5 14 0.00049 23.6 6.9 45 135-184 17-61 (87)
174 3hug_A RNA polymerase sigma fa 72.4 11 0.00039 24.3 5.9 50 16-70 37-86 (92)
175 2lfw_A PHYR sigma-like domain; 72.2 4.5 0.00015 29.1 4.2 64 139-207 92-155 (157)
176 2jn6_A Protein CGL2762, transp 69.9 11 0.00036 24.6 5.4 42 14-59 3-45 (97)
177 1tc3_C Protein (TC3 transposas 69.6 11 0.00039 20.4 5.3 40 16-60 5-44 (51)
178 2p7v_B Sigma-70, RNA polymeras 68.9 11 0.00039 22.7 5.0 52 140-192 5-56 (68)
179 1ku3_A Sigma factor SIGA; heli 67.5 12 0.00041 22.9 5.0 51 139-190 9-59 (73)
180 1je8_A Nitrate/nitrite respons 66.9 12 0.00041 23.7 5.0 46 139-190 20-65 (82)
181 1fse_A GERE; helix-turn-helix 66.6 11 0.00037 22.8 4.7 46 138-189 9-54 (74)
182 3c57_A Two component transcrip 64.8 15 0.00052 23.9 5.3 49 139-193 26-74 (95)
183 2jn6_A Protein CGL2762, transp 64.6 15 0.00052 23.8 5.3 42 138-183 3-45 (97)
184 1s7o_A Hypothetical UPF0122 pr 63.5 15 0.00052 25.0 5.3 48 140-192 22-69 (113)
185 1p4w_A RCSB; solution structur 63.5 18 0.00061 24.0 5.5 45 138-188 32-76 (99)
186 1x3u_A Transcriptional regulat 62.7 14 0.00046 22.8 4.6 46 140-191 16-61 (79)
187 2o8x_A Probable RNA polymerase 60.9 19 0.00065 21.4 5.0 47 16-67 15-61 (70)
188 2lv7_A Calcium-binding protein 60.9 32 0.0011 22.5 7.0 46 138-183 27-79 (100)
189 3mzy_A RNA polymerase sigma-H 60.1 21 0.00072 24.9 5.9 48 140-193 109-156 (164)
190 1xsv_A Hypothetical UPF0122 pr 60.0 21 0.0007 24.2 5.5 48 140-192 25-72 (113)
191 1iuf_A Centromere ABP1 protein 59.7 11 0.00038 26.8 4.2 50 11-60 6-59 (144)
192 1tty_A Sigma-A, RNA polymerase 58.5 15 0.00051 23.5 4.3 51 140-191 18-68 (87)
193 2lv7_A Calcium-binding protein 58.0 23 0.00079 23.2 5.3 47 13-59 26-79 (100)
194 1fse_A GERE; helix-turn-helix 56.5 28 0.00097 20.8 5.3 45 14-64 9-53 (74)
195 2rn7_A IS629 ORFA; helix, all 55.9 23 0.00079 23.4 5.1 46 14-59 4-52 (108)
196 1ku3_A Sigma factor SIGA; heli 55.6 26 0.0009 21.3 5.0 50 16-66 10-59 (73)
197 1fi6_A EH domain protein REPS1 54.7 22 0.00074 22.7 4.7 44 16-59 2-50 (92)
198 3fmy_A HTH-type transcriptiona 53.1 26 0.00088 21.3 4.6 41 15-62 9-49 (73)
199 1or7_A Sigma-24, RNA polymeras 53.1 26 0.00088 25.5 5.4 49 140-193 140-188 (194)
200 1je8_A Nitrate/nitrite respons 52.8 25 0.00087 22.1 4.7 44 15-64 20-63 (82)
201 2pmy_A RAS and EF-hand domain- 52.6 14 0.00049 23.4 3.5 45 15-59 19-68 (91)
202 1p4w_A RCSB; solution structur 52.5 26 0.00089 23.2 4.8 43 14-62 32-74 (99)
203 1s7o_A Hypothetical UPF0122 pr 52.1 38 0.0013 22.9 5.7 49 16-69 22-70 (113)
204 3c57_A Two component transcrip 51.6 33 0.0011 22.2 5.2 43 16-64 27-69 (95)
205 3mzy_A RNA polymerase sigma-H 51.4 43 0.0015 23.2 6.3 48 17-70 110-157 (164)
206 1rp3_A RNA polymerase sigma fa 51.3 28 0.00097 26.1 5.6 49 140-193 187-235 (239)
207 2x48_A CAG38821; archeal virus 51.2 21 0.0007 20.3 3.7 39 140-183 13-53 (55)
208 2rn7_A IS629 ORFA; helix, all 50.6 33 0.0011 22.6 5.2 46 138-183 4-52 (108)
209 3ulq_B Transcriptional regulat 50.5 39 0.0013 21.8 5.4 44 138-187 27-70 (90)
210 2rnj_A Response regulator prot 50.4 15 0.00052 23.6 3.3 46 139-190 28-73 (91)
211 2pmy_A RAS and EF-hand domain- 48.6 19 0.00066 22.7 3.6 45 139-183 19-68 (91)
212 3i5g_B Myosin regulatory light 47.8 58 0.002 22.8 6.5 39 13-51 6-49 (153)
213 1c07_A Protein (epidermal grow 47.3 24 0.00083 22.7 4.0 44 16-59 3-51 (95)
214 3fwb_A Cell division control p 46.7 50 0.0017 22.6 6.0 49 10-58 10-65 (161)
215 2hin_A GP39, repressor protein 46.7 19 0.00065 22.4 3.1 29 40-68 13-41 (71)
216 2xi8_A Putative transcription 46.2 16 0.00054 21.3 2.7 23 40-62 17-39 (66)
217 1fi6_A EH domain protein REPS1 46.1 30 0.001 22.0 4.3 43 141-183 3-50 (92)
218 3bd1_A CRO protein; transcript 44.8 16 0.00055 22.6 2.7 23 40-62 14-36 (79)
219 1c07_A Protein (epidermal grow 44.6 28 0.00097 22.3 4.0 43 141-183 4-51 (95)
220 1xsv_A Hypothetical UPF0122 pr 44.6 54 0.0019 22.0 5.6 49 16-69 25-73 (113)
221 2r1j_L Repressor protein C2; p 44.5 17 0.0006 21.2 2.7 23 40-62 21-43 (68)
222 1iuf_A Centromere ABP1 protein 44.4 29 0.001 24.5 4.3 51 135-185 6-60 (144)
223 3o9x_A Uncharacterized HTH-typ 43.4 34 0.0012 23.5 4.5 40 16-62 70-109 (133)
224 1zug_A Phage 434 CRO protein; 42.7 19 0.00065 21.3 2.7 23 40-62 19-41 (71)
225 2hin_A GP39, repressor protein 42.3 19 0.00066 22.4 2.7 28 164-191 13-40 (71)
226 3bs3_A Putative DNA-binding pr 41.4 21 0.00071 21.5 2.8 23 40-62 26-48 (76)
227 1u78_A TC3 transposase, transp 41.4 44 0.0015 22.8 4.9 41 139-184 5-45 (141)
228 2cqq_A RSGI RUH-037, DNAJ homo 40.9 63 0.0022 20.0 6.4 45 14-58 8-52 (72)
229 3omt_A Uncharacterized protein 40.8 22 0.00076 21.4 2.8 23 40-62 24-46 (73)
230 1tty_A Sigma-A, RNA polymerase 39.9 42 0.0014 21.2 4.2 50 16-66 18-67 (87)
231 1adr_A P22 C2 repressor; trans 39.7 22 0.00077 21.3 2.7 24 40-63 21-44 (76)
232 2q24_A Putative TETR family tr 39.5 16 0.00053 26.5 2.3 41 145-187 20-60 (194)
233 3ulq_B Transcriptional regulat 38.8 76 0.0026 20.3 5.4 41 14-60 27-67 (90)
234 2b5a_A C.BCLI; helix-turn-heli 38.7 24 0.00083 21.2 2.8 23 40-62 26-48 (77)
235 1r69_A Repressor protein CI; g 38.6 24 0.00083 20.6 2.7 23 40-62 17-39 (69)
236 1rzs_A Antirepressor, regulato 38.1 19 0.00065 21.3 2.1 19 40-58 13-31 (61)
237 1wj7_A Hypothetical protein (R 38.0 89 0.003 21.0 5.6 49 9-58 12-61 (104)
238 3kz3_A Repressor protein CI; f 37.8 25 0.00086 21.6 2.8 24 40-63 28-51 (80)
239 1rp3_A RNA polymerase sigma fa 37.3 63 0.0022 24.0 5.6 47 17-68 188-234 (239)
240 2kz5_A Transcription factor NF 37.2 67 0.0023 20.9 4.6 32 36-67 44-76 (91)
241 2qwt_A Transcriptional regulat 36.8 22 0.00074 25.8 2.7 39 146-186 19-57 (196)
242 1j7q_A CAVP, calcium vector pr 36.0 73 0.0025 19.3 5.4 46 14-59 5-60 (86)
243 1y7y_A C.AHDI; helix-turn-heli 35.5 30 0.001 20.6 2.8 23 40-62 29-51 (74)
244 2jpc_A SSRB; DNA binding prote 35.2 34 0.0012 19.7 3.0 27 164-190 16-42 (61)
245 3b7h_A Prophage LP1 protein 11 35.2 29 0.00098 21.0 2.7 23 40-62 23-45 (78)
246 2a6c_A Helix-turn-helix motif; 35.1 31 0.0011 21.5 2.9 23 40-62 34-56 (83)
247 3i5g_B Myosin regulatory light 35.0 69 0.0024 22.4 5.2 45 138-182 7-58 (153)
248 1or7_A Sigma-24, RNA polymeras 35.0 69 0.0024 23.0 5.3 29 40-68 159-187 (194)
249 2kpj_A SOS-response transcript 34.8 29 0.00099 22.2 2.8 24 40-63 25-48 (94)
250 2q0o_A Probable transcriptiona 33.7 72 0.0025 24.2 5.4 46 138-189 173-218 (236)
251 2rgt_A Fusion of LIM/homeobox 33.6 0.69 2.4E-05 34.3 -6.2 30 132-161 134-163 (169)
252 1j9i_A GPNU1 DBD;, terminase s 33.1 35 0.0012 20.5 2.8 20 40-59 5-24 (68)
253 3t72_q RNA polymerase sigma fa 32.9 71 0.0024 21.0 4.5 52 140-192 19-70 (99)
254 2wiu_B HTH-type transcriptiona 32.8 39 0.0013 20.9 3.2 24 40-63 28-51 (88)
255 2k9q_A Uncharacterized protein 32.6 34 0.0012 20.8 2.7 23 40-62 18-40 (77)
256 2ktg_A Calmodulin, putative; e 32.4 75 0.0026 19.1 4.5 46 14-59 5-57 (85)
257 2opo_A Polcalcin CHE A 3; calc 31.5 58 0.002 19.7 3.8 45 15-59 3-53 (86)
258 1l3l_A Transcriptional activat 31.2 99 0.0034 23.4 5.8 46 138-189 171-216 (234)
259 2ef8_A C.ECOT38IS, putative tr 31.1 37 0.0013 20.7 2.8 23 40-62 26-48 (84)
260 2q1z_A RPOE, ECF SIGE; ECF sig 30.8 17 0.00058 26.3 1.2 47 141-192 136-182 (184)
261 2ict_A Antitoxin HIGA; helix-t 30.5 38 0.0013 21.5 2.8 23 40-62 24-46 (94)
262 2lhi_A Calmodulin, serine/thre 30.4 33 0.0011 24.8 2.7 45 14-58 2-53 (176)
263 2q24_A Putative TETR family tr 30.2 30 0.001 24.8 2.6 44 21-66 20-63 (194)
264 3clo_A Transcriptional regulat 30.2 80 0.0027 24.4 5.2 47 139-191 196-242 (258)
265 3f6w_A XRE-family like protein 29.8 40 0.0014 20.7 2.7 23 40-62 30-52 (83)
266 3u0k_A Rcamp; fluorescent prot 29.4 83 0.0028 27.0 5.3 45 14-58 293-344 (440)
267 2qwt_A Transcriptional regulat 29.4 41 0.0014 24.3 3.2 42 22-65 19-60 (196)
268 1avs_A Troponin C; muscle cont 29.3 1E+02 0.0034 18.9 4.8 44 16-59 13-63 (90)
269 3t76_A VANU, transcriptional r 29.3 42 0.0014 21.6 2.8 23 40-62 40-62 (88)
270 2joj_A Centrin protein; N-term 29.0 70 0.0024 18.7 3.8 43 17-59 1-50 (77)
271 2rek_A Putative TETR-family tr 28.7 20 0.00067 26.0 1.2 39 146-186 22-60 (199)
272 1pdn_C Protein (PRD paired); p 28.4 1E+02 0.0034 20.2 4.9 45 15-59 74-125 (128)
273 2v57_A TETR family transcripti 27.6 28 0.00096 24.8 1.9 36 149-187 23-58 (190)
274 2jml_A DNA binding domain/tran 27.5 36 0.0012 21.3 2.2 20 164-183 8-27 (81)
275 2lfw_A PHYR sigma-like domain; 27.5 40 0.0014 23.8 2.7 47 16-67 93-139 (157)
276 1lmb_3 Protein (lambda repress 27.5 45 0.0015 20.9 2.7 23 40-62 33-55 (92)
277 2k27_A Paired box protein PAX- 27.2 1.6E+02 0.0055 20.5 6.5 47 14-60 81-134 (159)
278 3qq6_A HTH-type transcriptiona 26.9 49 0.0017 20.2 2.8 21 40-60 26-46 (78)
279 1skn_P DNA-binding domain of S 26.7 1.3E+02 0.0044 19.6 4.6 31 36-66 40-71 (92)
280 3s8q_A R-M controller protein; 26.6 50 0.0017 20.2 2.8 23 40-62 27-49 (82)
281 2pij_A Prophage PFL 6 CRO; tra 26.5 51 0.0018 19.2 2.7 21 40-60 16-36 (67)
282 1dtl_A Cardiac troponin C; hel 26.2 1.2E+02 0.004 20.6 5.1 46 14-59 9-62 (161)
283 4ich_A Transcriptional regulat 25.7 17 0.00058 28.9 0.4 39 148-187 128-166 (311)
284 3lsg_A Two-component response 25.5 57 0.0019 21.1 3.0 22 39-60 21-42 (103)
285 1x57_A Endothelial differentia 25.5 51 0.0018 20.7 2.7 23 40-62 29-51 (91)
286 3jsj_A Putative TETR-family tr 25.5 34 0.0012 24.3 2.1 40 146-187 15-54 (190)
287 3fia_A Intersectin-1; EH 1 dom 25.2 1.4E+02 0.0048 20.5 5.1 45 13-57 23-72 (121)
288 3o9x_A Uncharacterized HTH-typ 25.2 1E+02 0.0036 20.8 4.5 22 165-186 88-109 (133)
289 1t33_A Putative transcriptiona 25.2 31 0.0011 25.3 1.8 40 146-187 18-57 (224)
290 2v79_A DNA replication protein 25.1 1E+02 0.0034 21.6 4.4 40 17-59 30-73 (135)
291 3qrx_A Centrin; calcium-bindin 25.1 1.3E+02 0.0044 20.6 5.2 49 10-58 15-70 (169)
292 2l49_A C protein; P2 bacteriop 24.9 53 0.0018 20.9 2.8 24 40-63 20-43 (99)
293 2hku_A A putative transcriptio 24.9 37 0.0013 24.8 2.2 40 146-187 26-65 (215)
294 2mys_B Myosin; muscle protein, 24.4 1.6E+02 0.0055 20.1 5.6 44 16-59 18-69 (166)
295 2hxi_A Putative transcriptiona 24.2 66 0.0023 24.5 3.6 52 14-66 26-78 (241)
296 2ewt_A BLDD, putative DNA-bind 24.1 61 0.0021 18.9 2.8 23 40-62 24-48 (71)
297 3j04_B Myosin regulatory light 24.0 1.5E+02 0.005 19.6 5.2 43 17-59 1-50 (143)
298 2kgr_A Intersectin-1; structur 23.9 1E+02 0.0036 20.2 4.2 45 15-59 6-55 (111)
299 2q0o_A Probable transcriptiona 23.8 1.5E+02 0.0051 22.3 5.6 45 14-64 173-217 (236)
300 3g1o_A Transcriptional regulat 23.6 29 0.00099 26.4 1.4 41 146-187 49-89 (255)
301 2ofy_A Putative XRE-family tra 23.2 62 0.0021 19.9 2.8 23 40-62 30-52 (86)
302 2v57_A TETR family transcripti 22.4 50 0.0017 23.4 2.5 39 25-66 23-61 (190)
303 1l3l_A Transcriptional activat 22.4 1.9E+02 0.0066 21.7 6.0 45 14-64 171-215 (234)
304 2ovk_B RLC, myosin regulatory 22.3 1.4E+02 0.0048 20.1 4.8 47 13-59 6-59 (153)
305 2cw1_A SN4M; lambda CRO fold, 22.3 64 0.0022 19.5 2.5 22 39-60 15-36 (65)
306 3qp6_A CVIR transcriptional re 22.1 1.6E+02 0.0055 22.8 5.6 45 139-189 196-240 (265)
307 3kz9_A SMCR; transcriptional r 22.0 46 0.0016 23.7 2.2 41 24-65 25-65 (206)
308 2hxi_A Putative transcriptiona 22.0 68 0.0023 24.4 3.3 50 138-188 26-76 (241)
309 2ppx_A AGR_C_3184P, uncharacte 21.7 68 0.0023 20.6 2.8 23 40-62 46-68 (99)
310 1eh2_A EPS15; calcium binding, 21.7 1.8E+02 0.0061 19.1 5.7 43 140-182 8-54 (106)
311 2mys_C Myosin; muscle protein, 21.3 1.8E+02 0.0063 19.1 5.6 43 17-59 2-51 (149)
312 3op9_A PLI0006 protein; struct 21.3 66 0.0023 21.1 2.7 23 40-62 25-47 (114)
313 1mij_A Protein prospero; homeo 21.1 1.8E+02 0.0063 20.5 4.9 49 139-187 2-53 (152)
314 1aih_A HP1 integrase; DNA inte 21.0 2.1E+02 0.0073 19.8 6.2 43 13-55 3-45 (170)
315 3g7r_A Putative transcriptiona 21.0 35 0.0012 25.2 1.4 37 149-186 44-80 (221)
316 2kn2_A Calmodulin; S MAPK phos 20.7 1.5E+02 0.0052 18.0 4.4 42 18-59 4-52 (92)
317 1iq3_A Ralbp1-interacting prot 20.5 40 0.0014 22.5 1.4 43 140-182 15-62 (110)
318 1uxc_A FRUR (1-57), fructose r 20.5 84 0.0029 18.8 2.8 23 40-62 3-25 (65)
319 3u0k_A Rcamp; fluorescent prot 20.4 1.5E+02 0.0051 25.4 5.2 46 138-183 293-345 (440)
320 2rek_A Putative TETR-family tr 20.3 41 0.0014 24.2 1.6 42 22-65 22-63 (199)
321 3eus_A DNA-binding protein; st 20.2 80 0.0027 19.6 2.8 23 40-62 30-52 (86)
322 3oio_A Transcriptional regulat 20.1 1.2E+02 0.0039 19.9 3.8 22 38-59 24-45 (113)
No 1
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=5.6e-20 Score=120.64 Aligned_cols=65 Identities=31% Similarity=0.596 Sum_probs=61.1
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHhhcchhHHHHHhh
Q psy11996 6 ANGETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEHK 70 (222)
Q Consensus 6 ~~~~~~r~R~~~t~~q~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WF~nrR~k~~~~~~ 70 (222)
.+...+|.|+.||.+|+.+|+..|..++||+..+++.||..+||++.+|++||+|||+++++...
T Consensus 3 ~~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rr~~~ 67 (70)
T 2dmu_A 3 SGSSGRRHRTIFTDEQLEALENLFQETKYPDVGTREQLARKVHLREEKVEVWFKNRRAKWRRSGP 67 (70)
T ss_dssp STTSSCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTST
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCHHHeehccccccccccccCC
Confidence 45678899999999999999999999999999999999999999999999999999999998654
No 2
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A
Probab=99.81 E-value=1.4e-19 Score=120.85 Aligned_cols=71 Identities=35% Similarity=0.575 Sum_probs=64.6
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHhhcchhHHHHHhhhhc
Q psy11996 3 TVNANGETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEHKMAS 73 (222)
Q Consensus 3 ~~~~~~~~~r~R~~~t~~q~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WF~nrR~k~~~~~~~~~ 73 (222)
+.....+.++.|+.||..|+.+|+..|..++||+..++..||..+||++.+|++||+|||+++++......
T Consensus 2 s~~~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kr~~~~~~ 72 (77)
T 1nk2_P 2 SDGLPNKKRKRRVLFTKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKTKRAQNEKG 72 (77)
T ss_dssp CSCCSCCCCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhcchhhhhcccc
Confidence 34556678889999999999999999999999999999999999999999999999999999998766544
No 3
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.81 E-value=1e-19 Score=122.55 Aligned_cols=67 Identities=33% Similarity=0.530 Sum_probs=62.4
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHhhcchhHHHHHhhhh
Q psy11996 6 ANGETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEHKMA 72 (222)
Q Consensus 6 ~~~~~~r~R~~~t~~q~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WF~nrR~k~~~~~~~~ 72 (222)
.+.+.+|.|+.||.+|+.+|+..|..++||+..+++.||..+||++.+|++||+|||+++++.....
T Consensus 3 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~rk~~~~~ 69 (80)
T 2dms_A 3 SGSSGRRERTTFTRAQLDVLEALFAKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQQQQQ 69 (80)
T ss_dssp CCCCCCCCCSSCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHTHHHHTTCSC
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHhhhhhHHHhHHhhHHHHcc
Confidence 4567899999999999999999999999999999999999999999999999999999999976543
No 4
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A*
Probab=99.80 E-value=1.2e-19 Score=124.38 Aligned_cols=84 Identities=85% Similarity=1.242 Sum_probs=63.3
Q ss_pred CCcccccccCCCccccccccccCCCCCCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHcCCChhhHHHHHhhhhh
Q psy11996 108 GDLRYHWTNRAPLKYVKRGTVNANGETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRM 187 (222)
Q Consensus 108 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~q~~~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nrR~ 187 (222)
.+.++||+....... +.....+..++.|+.|+..|+.+|+..|..++||+..++..||..+||++.+|++||+|||+
T Consensus 5 p~~~~pwm~~~~~~~---~~~~~~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~ 81 (88)
T 2r5y_A 5 PPQIYPWMKRVHLGT---STVNANGETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRM 81 (88)
T ss_dssp CSSCCGGGSCC------------------CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCCCCchhhccCCCC---CCCCCCCCCCCCCCCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCcCHHHhhHHhHHHHH
Confidence 356677776654432 22334556788999999999999999999999999999999999999999999999999999
Q ss_pred hHHHhhh
Q psy11996 188 KWKKEHK 194 (222)
Q Consensus 188 k~kk~~~ 194 (222)
++|+..+
T Consensus 82 k~kk~~k 88 (88)
T 2r5y_A 82 KWKKEHK 88 (88)
T ss_dssp HHHTTCC
T ss_pred HhHhhcC
Confidence 9998653
No 5
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.80 E-value=4e-20 Score=121.30 Aligned_cols=65 Identities=42% Similarity=0.702 Sum_probs=60.6
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHhhcchhHHHHHhh
Q psy11996 6 ANGETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEHK 70 (222)
Q Consensus 6 ~~~~~~r~R~~~t~~q~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WF~nrR~k~~~~~~ 70 (222)
.+...+++|+.||.+|+.+|+..|..++||+..++..||..+||++.+|++||+|||+++++...
T Consensus 3 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~~ 67 (70)
T 2cra_A 3 SGSSGRKKRIPYSKGQLRELEREYAANKFITKDKRRKISAATSLSERQITIWFQNRRVKEKKSGP 67 (70)
T ss_dssp SSCCCCCSCCCSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHTTTSSCT
T ss_pred CCCCCCCCCCcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhhHhhHhHHHHhcccCC
Confidence 45678899999999999999999999999999999999999999999999999999999988543
No 6
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.80 E-value=1.4e-19 Score=121.74 Aligned_cols=68 Identities=38% Similarity=0.650 Sum_probs=63.4
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHhhcchhHHHHHhhhhc
Q psy11996 6 ANGETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEHKMAS 73 (222)
Q Consensus 6 ~~~~~~r~R~~~t~~q~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WF~nrR~k~~~~~~~~~ 73 (222)
++...+|.|+.||.+|+.+|+..|..++||+..++..||..+||++.+|++||+|||+++++..+...
T Consensus 3 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~~~~ 70 (80)
T 2cue_A 3 SGSSGQRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKLRN 70 (80)
T ss_dssp SCCSSCCCCCCSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCccCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHHHHHHHHHHHHHhhhhh
Confidence 45678899999999999999999999999999999999999999999999999999999999876553
No 7
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.80 E-value=2.3e-19 Score=120.79 Aligned_cols=67 Identities=27% Similarity=0.438 Sum_probs=62.3
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHhhcchhHHHHHhhhh
Q psy11996 6 ANGETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEHKMA 72 (222)
Q Consensus 6 ~~~~~~r~R~~~t~~q~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WF~nrR~k~~~~~~~~ 72 (222)
.+...+|.|+.||.+|+.+|+..|..++||+..+++.||..+||++.+|++||+|||+++++.....
T Consensus 3 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~~~ 69 (80)
T 2dmq_A 3 SGSSGKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRRNLLRQ 69 (80)
T ss_dssp CCCCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHSS
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHhhHccHHHHHHHHHHHHHH
Confidence 4567889999999999999999999999999999999999999999999999999999999976543
No 8
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1
Probab=99.80 E-value=3.9e-20 Score=129.05 Aligned_cols=65 Identities=58% Similarity=0.895 Sum_probs=57.3
Q ss_pred CCCCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHcCCChhhHHHHHhhhhhhHHHhhhcc
Q psy11996 132 GETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEHKMA 196 (222)
Q Consensus 132 ~~~~~~r~~~~~~q~~~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nrR~k~kk~~~~~ 196 (222)
+..++.|+.|+..|+.+|+..|..++||+..++..||..|||++.+|++||+|||+++|+..+.+
T Consensus 32 ~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~~g 96 (97)
T 1b72_A 32 GSPSGLRTNFTTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQVKIWFQNRRMKQKKREREG 96 (97)
T ss_dssp -----CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHTC-
T ss_pred CCCCCCCcCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhHHHHHHHhHHHhHHhccC
Confidence 35677899999999999999999999999999999999999999999999999999999987653
No 9
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.80 E-value=1.6e-19 Score=118.45 Aligned_cols=65 Identities=40% Similarity=0.723 Sum_probs=60.7
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHhhcchhHHHHHhh
Q psy11996 6 ANGETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEHK 70 (222)
Q Consensus 6 ~~~~~~r~R~~~t~~q~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WF~nrR~k~~~~~~ 70 (222)
.+...++.|+.||.+|+.+|+..|..++||+..++..||..+||++.+|++||+|||+++++...
T Consensus 3 ~~~~~~r~R~~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rr~~~ 67 (70)
T 2e1o_A 3 SGSSGKGGQVRFSNDQTIELEKKFETQKYLSPPERKRLAKMLQLSERQVKTWFQNRRAKWRRSGP 67 (70)
T ss_dssp CCCCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHSC
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCCCHHHhhHhhHhhHhhcCCCCC
Confidence 45567888999999999999999999999999999999999999999999999999999998654
No 10
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=99.80 E-value=1.2e-19 Score=116.58 Aligned_cols=61 Identities=70% Similarity=1.118 Sum_probs=56.2
Q ss_pred CCCCCCCCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHhhcchhHHHHHh
Q psy11996 9 ETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEH 69 (222)
Q Consensus 9 ~~~r~R~~~t~~q~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WF~nrR~k~~~~~ 69 (222)
..+|.|+.||..|+.+|+..|..++||+..++..||..+||++.+|++||+|||+++++.+
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~ 62 (63)
T 2h1k_A 2 SNKRTRTAYTRAQLLELEKEFLFNKYISRPRRVELAVMLNLTERHIKIWFQNRRMKWKKEE 62 (63)
T ss_dssp ---CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHHHHhhhhhhhhhc
Confidence 4688999999999999999999999999999999999999999999999999999999853
No 11
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A
Probab=99.80 E-value=3.3e-19 Score=119.09 Aligned_cols=71 Identities=35% Similarity=0.563 Sum_probs=64.6
Q ss_pred CCCCCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHcCCChhhHHHHHhhhhhhHHHhhhcccCCCC
Q psy11996 131 NGETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEHKMASMNVI 201 (222)
Q Consensus 131 ~~~~~~~r~~~~~~q~~~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nrR~k~kk~~~~~~~~~~ 201 (222)
....++.|+.|+..|+.+|+..|..++||+..++..||..+||++.+|++||+|||+++|+..........
T Consensus 6 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kr~~~~~~~~~~ 76 (77)
T 1nk2_P 6 PNKKRKRRVLFTKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKTKRAQNEKGYEGH 76 (77)
T ss_dssp SCCCCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred CCCCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhcchhhhhccccCCCC
Confidence 44667889999999999999999999999999999999999999999999999999999998877665543
No 12
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.79 E-value=6.3e-20 Score=120.42 Aligned_cols=65 Identities=28% Similarity=0.339 Sum_probs=60.9
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHhhcchhHHHHHhh
Q psy11996 6 ANGETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEHK 70 (222)
Q Consensus 6 ~~~~~~r~R~~~t~~q~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WF~nrR~k~~~~~~ 70 (222)
.....++.|+.||.+|+.+|+..|..++||+..++..||..+||++.+|++||+|||+++++..+
T Consensus 3 ~~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~~ 67 (70)
T 2da1_A 3 SGSSGKRPRTRITDDQLRVLRQYFDINNSPSEEQIKEMADKSGLPQKVIKHWFRNTLFKERQSGP 67 (70)
T ss_dssp SSCCCCSCSCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCC
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCCCHHHHHHHhhhhhHHHhhhcc
Confidence 45678899999999999999999999999999999999999999999999999999999998654
No 13
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A
Probab=99.79 E-value=3.7e-19 Score=118.85 Aligned_cols=68 Identities=62% Similarity=0.859 Sum_probs=62.8
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHhhcchhHHHHHhhhh
Q psy11996 5 NANGETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEHKMA 72 (222)
Q Consensus 5 ~~~~~~~r~R~~~t~~q~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WF~nrR~k~~~~~~~~ 72 (222)
...+..++.|+.||..|+.+|+..|..++||+..++..||..+||++.+|++||+|||+++++..+..
T Consensus 8 ~~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~k~~ 75 (77)
T 1puf_A 8 LHARSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKINKDR 75 (77)
T ss_dssp CCCCTTSCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCCCCCCCCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhhhhc
Confidence 34566788999999999999999999999999999999999999999999999999999999987653
No 14
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.79 E-value=7.8e-20 Score=119.98 Aligned_cols=65 Identities=31% Similarity=0.460 Sum_probs=60.7
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHhhcchhHHHHHh
Q psy11996 5 NANGETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEH 69 (222)
Q Consensus 5 ~~~~~~~r~R~~~t~~q~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WF~nrR~k~~~~~ 69 (222)
....+.++.|+.||.+|+.+|+..|..++||+..+++.||..+||++.+|++||+|||+++++..
T Consensus 2 ~~~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~ 66 (70)
T 2da2_A 2 SSGSSGRSSRTRFTDYQLRVLQDFFDANAYPKDDEFEQLSNLLNLPTRVIVVWFQNARQKARKSG 66 (70)
T ss_dssp CCSCCSCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHHCCCS
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHhHHhhHhhhHHHhhcc
Confidence 34567889999999999999999999999999999999999999999999999999999998754
No 15
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=9.9e-20 Score=122.53 Aligned_cols=65 Identities=43% Similarity=0.765 Sum_probs=60.3
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHhhcchhHHHHHhh
Q psy11996 6 ANGETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEHK 70 (222)
Q Consensus 6 ~~~~~~r~R~~~t~~q~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WF~nrR~k~~~~~~ 70 (222)
...+.++.|+.||.+|+.+|+..|..++||+..+++.||..+||++.+|++||+|||+++++..+
T Consensus 13 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~~~ 77 (80)
T 2dmt_A 13 KAKKGRRSRTVFTELQLMGLEKRFEKQKYLSTPDRIDLAESLGLSQLQVKTWYQNRRMKWKKSGP 77 (80)
T ss_dssp CCCCCCCSCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSCCCS
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHeeeccHHHHHHhhcccC
Confidence 44567889999999999999999999999999999999999999999999999999999988543
No 16
>2m0c_A Homeobox protein aristaless-like 4; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.79 E-value=1.2e-19 Score=120.64 Aligned_cols=70 Identities=40% Similarity=0.710 Sum_probs=64.6
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHhhcchhHHHHHhhh
Q psy11996 2 STVNANGETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEHKM 71 (222)
Q Consensus 2 ~~~~~~~~~~r~R~~~t~~q~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WF~nrR~k~~~~~~~ 71 (222)
|..+..++.++.|+.|+.+|+.+|+..|..++||+..++..||..+||++.+|++||+|||+++++..+.
T Consensus 1 S~~~~~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~r~ 70 (75)
T 2m0c_A 1 SHMSNKGKKRRNRTTFTSYQLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQVWFQNRRAKWRKRERF 70 (75)
T ss_dssp CCSCCCSCCCSCSCSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTCCCCC
T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHHHHHHHHHHhh
Confidence 4556777889999999999999999999999999999999999999999999999999999999986554
No 17
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=7.7e-20 Score=119.97 Aligned_cols=65 Identities=38% Similarity=0.660 Sum_probs=60.5
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHhhcchhHHHHHh
Q psy11996 5 NANGETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEH 69 (222)
Q Consensus 5 ~~~~~~~r~R~~~t~~q~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WF~nrR~k~~~~~ 69 (222)
..+...++.|+.||.+|+.+|+..|..++||+..+++.||..+||++.+|++||+|||+++++..
T Consensus 2 s~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 66 (70)
T 2djn_A 2 SSGSSGRKPRTIYSSFQLAALQRRFQKTQYLALPERAELAASLGLTQTQVKIWFQNKRSKIKKSG 66 (70)
T ss_dssp CSCCCCCCSSCSSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHSSCCHHHHHHHHHHHHHTCSSSS
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHhhhhcccC
Confidence 34567889999999999999999999999999999999999999999999999999999988753
No 18
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=99.79 E-value=1.9e-19 Score=114.94 Aligned_cols=58 Identities=52% Similarity=0.811 Sum_probs=53.1
Q ss_pred CCCCCCCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHhhcchhHHHH
Q psy11996 10 TKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKK 67 (222)
Q Consensus 10 ~~r~R~~~t~~q~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WF~nrR~k~~~ 67 (222)
.+|.|+.||.+|+.+|+..|..++||+..++..||..+||++.+|++||+|||+++++
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk 60 (61)
T 2hdd_A 3 EKRPRTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIKIWFKNKRAKIKK 60 (61)
T ss_dssp ----CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHhhhhcccccc
Confidence 5788999999999999999999999999999999999999999999999999999886
No 19
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=99.79 E-value=3.2e-19 Score=112.71 Aligned_cols=57 Identities=47% Similarity=0.774 Sum_probs=55.3
Q ss_pred CCCCCCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHhhcchhHHHH
Q psy11996 11 KRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKK 67 (222)
Q Consensus 11 ~r~R~~~t~~q~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WF~nrR~k~~~ 67 (222)
+++|+.||.+|+.+|+..|..++||+..++..||..+||++.+|++||+|||+++++
T Consensus 1 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr 57 (58)
T 1ig7_A 1 RKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKR 57 (58)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhhhhhHhhhhhcc
Confidence 578999999999999999999999999999999999999999999999999999886
No 20
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=3.9e-19 Score=116.59 Aligned_cols=65 Identities=31% Similarity=0.583 Sum_probs=60.7
Q ss_pred CCCCCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHcCCChhhHHHHHhhhhhhHHHhhhc
Q psy11996 131 NGETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEHKM 195 (222)
Q Consensus 131 ~~~~~~~r~~~~~~q~~~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nrR~k~kk~~~~ 195 (222)
.+..++.|+.|+.+|+.+|+..|..++||+..++..||..+||++.+|++||+|||+++|+..+.
T Consensus 4 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rr~~~~ 68 (70)
T 2dmu_A 4 GSSGRRHRTIFTDEQLEALENLFQETKYPDVGTREQLARKVHLREEKVEVWFKNRRAKWRRSGPS 68 (70)
T ss_dssp TTSSCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTSTT
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCHHHeehccccccccccccCCC
Confidence 34567889999999999999999999999999999999999999999999999999999997654
No 21
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.79 E-value=4.6e-19 Score=115.55 Aligned_cols=63 Identities=40% Similarity=0.637 Sum_probs=59.6
Q ss_pred CCCCCCCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHhhcchhHHHHHhhhh
Q psy11996 10 TKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEHKMA 72 (222)
Q Consensus 10 ~~r~R~~~t~~q~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WF~nrR~k~~~~~~~~ 72 (222)
.++.|+.||..|+.+|+..|..++||+..++..||..+||++.+|++||+|||+++++.....
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kk~~~~~ 64 (68)
T 1zq3_P 2 PRRTRTTFTSSQIAELEQHFLQGRYLTAPRLADLSAKLALGTAQVKIWFKNRRRRHKIQSDQH 64 (68)
T ss_dssp CSCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cCCCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHhhHHHHHHHHHHhccc
Confidence 678999999999999999999999999999999999999999999999999999999976543
No 22
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=3.9e-19 Score=119.63 Aligned_cols=65 Identities=43% Similarity=0.759 Sum_probs=60.6
Q ss_pred CCCCCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHcCCChhhHHHHHhhhhhhHHHhhhc
Q psy11996 131 NGETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEHKM 195 (222)
Q Consensus 131 ~~~~~~~r~~~~~~q~~~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nrR~k~kk~~~~ 195 (222)
....++.|+.|+.+|+.+|+..|..++||+..++..||..|||++.+|++||+|||+|+|+..+.
T Consensus 14 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~~~s 78 (80)
T 2dmt_A 14 AKKGRRSRTVFTELQLMGLEKRFEKQKYLSTPDRIDLAESLGLSQLQVKTWYQNRRMKWKKSGPS 78 (80)
T ss_dssp CCCCCCSCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSCCCSC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHeeeccHHHHHHhhcccCC
Confidence 44667889999999999999999999999999999999999999999999999999999997653
No 23
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A*
Probab=99.78 E-value=1.9e-19 Score=121.31 Aligned_cols=65 Identities=78% Similarity=1.151 Sum_probs=54.5
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHhhcchhHHHHHh
Q psy11996 5 NANGETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEH 69 (222)
Q Consensus 5 ~~~~~~~r~R~~~t~~q~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WF~nrR~k~~~~~ 69 (222)
...+..+|.|+.||.+|+.+|+..|..++||+..+++.||..+||++.+|++||+|||+++++..
T Consensus 15 ~~~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~ 79 (81)
T 1b8i_A 15 GTNGLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALSLTERQIKIWFQNRRMKLKKEI 79 (81)
T ss_dssp ---------CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCCCCcccCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhhhhhhhc
Confidence 44567789999999999999999999999999999999999999999999999999999999854
No 24
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus}
Probab=99.78 E-value=1.4e-19 Score=115.88 Aligned_cols=60 Identities=33% Similarity=0.582 Sum_probs=52.5
Q ss_pred CCCCCCCCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHhhcchhHHHHH
Q psy11996 9 ETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKE 68 (222)
Q Consensus 9 ~~~r~R~~~t~~q~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WF~nrR~k~~~~ 68 (222)
+.++.|+.||..|+.+||..|..++||+..++..||..+||++.+|++||+|||+++++.
T Consensus 2 ~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr~ 61 (62)
T 2vi6_A 2 TKQKMRTVFSQAQLCALKDRFQKQKYLSLQQMQELSSILNLSYKQVKTWFQNQRMKCKRW 61 (62)
T ss_dssp ------CCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCGGG
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhhHHhHHhhcchhhc
Confidence 568899999999999999999999999999999999999999999999999999998873
No 25
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.78 E-value=3.4e-19 Score=116.88 Aligned_cols=65 Identities=42% Similarity=0.689 Sum_probs=60.4
Q ss_pred CCCCCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHcCCChhhHHHHHhhhhhhHHHhhhc
Q psy11996 131 NGETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEHKM 195 (222)
Q Consensus 131 ~~~~~~~r~~~~~~q~~~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nrR~k~kk~~~~ 195 (222)
.+..++.|+.|+..|+.+|+..|..++||+..++..||..+||++.+|++||+|||+++|+....
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~~~ 68 (70)
T 2cra_A 4 GSSGRKKRIPYSKGQLRELEREYAANKFITKDKRRKISAATSLSERQITIWFQNRRVKEKKSGPS 68 (70)
T ss_dssp SCCCCCSCCCSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHTTTSSCTT
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhhHhhHhHHHHhcccCCC
Confidence 34667889999999999999999999999999999999999999999999999999999987643
No 26
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.78 E-value=8.2e-19 Score=118.03 Aligned_cols=70 Identities=31% Similarity=0.468 Sum_probs=64.0
Q ss_pred CCCCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHcCCChhhHHHHHhhhhhhHHHhhhcccCCCC
Q psy11996 132 GETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEHKMASMNVI 201 (222)
Q Consensus 132 ~~~~~~r~~~~~~q~~~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nrR~k~kk~~~~~~~~~~ 201 (222)
...++.|+.|+.+|+.+|+..|..++||+..++..||..+||++.+|++||+|||+++|+..+....+..
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~rk~~~~~~~~~~ 74 (80)
T 2dms_A 5 SSGRRERTTFTRAQLDVLEALFAKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQQQQQQNGGQ 74 (80)
T ss_dssp CCCCCCCSSCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHTHHHHTTCSCCCCCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHhhhhhHHHhHHhhHHHHccCCCCC
Confidence 4678889999999999999999999999999999999999999999999999999999998876554443
No 27
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=99.78 E-value=4.2e-19 Score=114.02 Aligned_cols=61 Identities=70% Similarity=1.118 Sum_probs=56.3
Q ss_pred CCCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHcCCChhhHHHHHhhhhhhHHHhh
Q psy11996 133 ETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEH 193 (222)
Q Consensus 133 ~~~~~r~~~~~~q~~~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nrR~k~kk~~ 193 (222)
..++.|+.|+..|+.+|+..|..++||+..++..||..+||++.+|++||+|||+++|+.+
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~ 62 (63)
T 2h1k_A 2 SNKRTRTAYTRAQLLELEKEFLFNKYISRPRRVELAVMLNLTERHIKIWFQNRRMKWKKEE 62 (63)
T ss_dssp ---CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHHHHhhhhhhhhhc
Confidence 4578899999999999999999999999999999999999999999999999999999864
No 28
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.78 E-value=1.5e-19 Score=121.71 Aligned_cols=65 Identities=31% Similarity=0.420 Sum_probs=60.6
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHhhcchhHHHHHh
Q psy11996 5 NANGETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEH 69 (222)
Q Consensus 5 ~~~~~~~r~R~~~t~~q~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WF~nrR~k~~~~~ 69 (222)
....+.+|.|+.||.+|+.+|+..|..++||+..+++.||..|||++.+|++||+|||+++++..
T Consensus 12 ~~~~~~rr~Rt~ft~~Ql~~Le~~f~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 76 (80)
T 2da3_A 12 EEPQRDKRLRTTITPEQLEILYQKYLLDSNPTRKMLDHIAHEVGLKKRVVQVWFQNTRARERKSG 76 (80)
T ss_dssp CCCCCCTTCCSSCCTTTHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHSSC
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhHHHhHHHHHhHhhhc
Confidence 34566788999999999999999999999999999999999999999999999999999999854
No 29
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.78 E-value=2.7e-19 Score=120.07 Aligned_cols=62 Identities=16% Similarity=0.196 Sum_probs=57.7
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHhhh----CCCCCHHHHHHHHHHhCCChHHHHHHhhcchhHHHH
Q psy11996 6 ANGETKRQRTSYTRYQTLELEKEFHF----NRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKK 67 (222)
Q Consensus 6 ~~~~~~r~R~~~t~~q~~~L~~~f~~----~~~p~~~~~~~la~~~~l~~~~v~~WF~nrR~k~~~ 67 (222)
...+.||.||.||.+|+..|+..|.. ++||+..++++||..|||++.+|++||||||+|.++
T Consensus 13 ~~~~~rR~Rt~ft~~Ql~~Le~~f~~~~~~~~yp~~~~r~~La~~lgL~~~~VkvWFqNrRaK~~~ 78 (80)
T 1wh5_A 13 GGGIRKRHRTKFTAEQKERMLALAERIGWRIQRQDDEVIQRFCQETGVPRQVLKVWLHNNKHSGPS 78 (80)
T ss_dssp CCCCSCCCSCCCCHHHHHHHHHHHHHHTSCCCTTTHHHHHHHHHHSCCCHHHHHHHHHHHSSSSSC
T ss_pred CCCCCCCCCccCCHHHHHHHHHHHHhccCcCCCcCHHHHHHHHHHhCCCcccccCCccccCcCCCC
Confidence 34567899999999999999999999 999999999999999999999999999999998754
No 30
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=1.1e-18 Score=117.50 Aligned_cols=70 Identities=26% Similarity=0.404 Sum_probs=64.1
Q ss_pred CCCCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHcCCChhhHHHHHhhhhhhHHHhhhcccCCCC
Q psy11996 132 GETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEHKMASMNVI 201 (222)
Q Consensus 132 ~~~~~~r~~~~~~q~~~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nrR~k~kk~~~~~~~~~~ 201 (222)
...++.|+.|+.+|+.+|+..|..++||+..++..||..+||++.+|++||+|||+++|+.......+..
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~~~~~~~~ 74 (80)
T 2dmq_A 5 SSGKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRRNLLRQENGGV 74 (80)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHSSCCCSS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHhhHccHHHHHHHHHHHHHHhcCCC
Confidence 4568889999999999999999999999999999999999999999999999999999998776655543
No 31
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.78 E-value=3.9e-19 Score=116.60 Aligned_cols=65 Identities=31% Similarity=0.440 Sum_probs=60.7
Q ss_pred CCCCCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHcCCChhhHHHHHhhhhhhHHHhhhc
Q psy11996 131 NGETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEHKM 195 (222)
Q Consensus 131 ~~~~~~~r~~~~~~q~~~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nrR~k~kk~~~~ 195 (222)
.+..++.|+.|+.+|+.+|+..|..++||+..++..||..+||++.+|++||+|||+++|+..+.
T Consensus 4 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~~~ 68 (70)
T 2da2_A 4 GSSGRSSRTRFTDYQLRVLQDFFDANAYPKDDEFEQLSNLLNLPTRVIVVWFQNARQKARKSGPS 68 (70)
T ss_dssp SCCSCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHHCCCSSC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHhHHhhHhhhHHHhhcccc
Confidence 44677889999999999999999999999999999999999999999999999999999987654
No 32
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens}
Probab=99.78 E-value=5.6e-19 Score=120.03 Aligned_cols=65 Identities=32% Similarity=0.528 Sum_probs=60.7
Q ss_pred CCCCCCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHcCCChhhHHHHHhhhhhhHHHhhh
Q psy11996 130 ANGETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEHK 194 (222)
Q Consensus 130 ~~~~~~~~r~~~~~~q~~~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nrR~k~kk~~~ 194 (222)
.....++.|+.|+..|+.+|+..|..++||+..++..||..|||++.+|++||+|||+++|+..+
T Consensus 18 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~k 82 (84)
T 2kt0_A 18 VPVKKQKTRTVFSSTQLCVLNDRFQRQKYLSLQQMQELSNILNLSYKQVKTWFQNQRMKSKRWQK 82 (84)
T ss_dssp CCSCSCCCSSCCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHTTTSCCC
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhh
Confidence 34567888999999999999999999999999999999999999999999999999999998765
No 33
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.78 E-value=8.1e-19 Score=115.06 Aligned_cols=64 Identities=41% Similarity=0.719 Sum_probs=60.0
Q ss_pred CCCCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHcCCChhhHHHHHhhhhhhHHHhhhc
Q psy11996 132 GETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEHKM 195 (222)
Q Consensus 132 ~~~~~~r~~~~~~q~~~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nrR~k~kk~~~~ 195 (222)
...++.|+.|+.+|+.+|+..|..++||+..++..||..+||++.+|++||+|||+++|+....
T Consensus 5 ~~~~r~R~~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rr~~~~ 68 (70)
T 2e1o_A 5 SSGKGGQVRFSNDQTIELEKKFETQKYLSPPERKRLAKMLQLSERQVKTWFQNRRAKWRRSGPS 68 (70)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHSCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCCCHHHhhHhhHhhHhhcCCCCCC
Confidence 3567789999999999999999999999999999999999999999999999999999998764
No 34
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.78 E-value=4.6e-19 Score=115.53 Aligned_cols=63 Identities=37% Similarity=0.643 Sum_probs=59.4
Q ss_pred CCCCCCCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHhhcchhHHHHHhhhh
Q psy11996 10 TKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEHKMA 72 (222)
Q Consensus 10 ~~r~R~~~t~~q~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WF~nrR~k~~~~~~~~ 72 (222)
.++.|+.||..|+.+|+..|..++||+..++..||..+||++.+|++||+|||+++++..+..
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~~~~~ 64 (68)
T 1ftt_A 2 RRKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQAKDK 64 (68)
T ss_dssp CSSSCSSCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTSCC
T ss_pred CCCCCCccCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhHHHhHHHhhhhhhhhhHh
Confidence 578899999999999999999999999999999999999999999999999999999976543
No 35
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A
Probab=99.78 E-value=3e-19 Score=116.39 Aligned_cols=62 Identities=89% Similarity=1.354 Sum_probs=58.7
Q ss_pred CCCCCCCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHhhcchhHHHHHhhh
Q psy11996 10 TKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEHKM 71 (222)
Q Consensus 10 ~~r~R~~~t~~q~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WF~nrR~k~~~~~~~ 71 (222)
.+|.|+.||.+|+.+|+..|..++||+..++..||..+||++.+|++||+|||+++++..+.
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~~~ 63 (68)
T 1ahd_P 2 RKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKENKT 63 (68)
T ss_dssp CSCTTCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHSCC
T ss_pred CCCCCCCcCHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHhhhhHHhHHHHhHHhHhccc
Confidence 47889999999999999999999999999999999999999999999999999999997643
No 36
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P
Probab=99.78 E-value=1.8e-19 Score=117.46 Aligned_cols=63 Identities=43% Similarity=0.708 Sum_probs=60.0
Q ss_pred CCCCCCCCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHhhcchhHHHHHhhh
Q psy11996 9 ETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEHKM 71 (222)
Q Consensus 9 ~~~r~R~~~t~~q~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WF~nrR~k~~~~~~~ 71 (222)
+.++.|+.||..|+.+|+..|..++||+..++..||..+||++.+|++||+|||+++++..+.
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~~~ 64 (68)
T 1yz8_P 2 SQRRQRTHFTSQQLQQLEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKREEF 64 (68)
T ss_dssp CSSCSCCCCCHHHHHHHHHHHTTCSSCCTTTTTHHHHHTTSCHHHHHHHHHHHHHHHHHHTTT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhHHHHHHhhc
Confidence 578999999999999999999999999999999999999999999999999999999997654
No 37
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.78 E-value=4.6e-19 Score=112.70 Aligned_cols=58 Identities=53% Similarity=0.782 Sum_probs=55.4
Q ss_pred CCCCCCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHhhcchhHHHHH
Q psy11996 11 KRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKE 68 (222)
Q Consensus 11 ~r~R~~~t~~q~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WF~nrR~k~~~~ 68 (222)
+|.|+.||.+|+.+|+..|..++||+..++..||..+||++.+|++||+|+|+++++.
T Consensus 2 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~ 59 (60)
T 1jgg_A 2 RRYRTAFTRDQLGRLEKEFYKENYVSRPRRCELAAQLNLPESTIKVWFQNRRMKDKRQ 59 (60)
T ss_dssp -CCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHhhHHHHhHhhcc
Confidence 6789999999999999999999999999999999999999999999999999999874
No 38
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens}
Probab=99.78 E-value=2.5e-19 Score=121.78 Aligned_cols=66 Identities=32% Similarity=0.525 Sum_probs=60.9
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHhhcchhHHHHHhh
Q psy11996 5 NANGETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEHK 70 (222)
Q Consensus 5 ~~~~~~~r~R~~~t~~q~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WF~nrR~k~~~~~~ 70 (222)
....+.++.|+.|+..|+.+|+..|..++||+..++..||..+||++.+|++||+|||+++++..+
T Consensus 17 ~~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~k 82 (84)
T 2kt0_A 17 KVPVKKQKTRTVFSSTQLCVLNDRFQRQKYLSLQQMQELSNILNLSYKQVKTWFQNQRMKSKRWQK 82 (84)
T ss_dssp CCCSCSCCCSSCCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHTTTSCCC
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhh
Confidence 345677889999999999999999999999999999999999999999999999999999987543
No 39
>2m0c_A Homeobox protein aristaless-like 4; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.78 E-value=5.4e-19 Score=117.54 Aligned_cols=69 Identities=41% Similarity=0.723 Sum_probs=63.8
Q ss_pred CCCCCCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHcCCChhhHHHHHhhhhhhHHHhhhcccC
Q psy11996 130 ANGETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEHKMASM 198 (222)
Q Consensus 130 ~~~~~~~~r~~~~~~q~~~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nrR~k~kk~~~~~~~ 198 (222)
..+..++.|+.|+..|+.+|+..|..++||+..++..||..+||++.+|++||+|||+++|+..+.+.+
T Consensus 5 ~~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~r~~q~ 73 (75)
T 2m0c_A 5 NKGKKRRNRTTFTSYQLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQVWFQNRRAKWRKRERFGQM 73 (75)
T ss_dssp CCSCCCSCSCSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTCCCCCCSS
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHHHHHHHHHHhhhhc
Confidence 345678889999999999999999999999999999999999999999999999999999998877654
No 40
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A*
Probab=99.77 E-value=2.7e-19 Score=122.60 Aligned_cols=65 Identities=98% Similarity=1.456 Sum_probs=55.3
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHhhcchhHHHHHh
Q psy11996 5 NANGETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEH 69 (222)
Q Consensus 5 ~~~~~~~r~R~~~t~~q~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WF~nrR~k~~~~~ 69 (222)
+..+..+|.|+.||.+|+.+|+..|..++||+..++..||..+||++.+|++||+|||+++++..
T Consensus 23 ~~~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~ 87 (88)
T 2r5y_A 23 NANGETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKEH 87 (88)
T ss_dssp --------CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCCCCCCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCcCHHHhhHHhHHHHHHhHhhc
Confidence 45567889999999999999999999999999999999999999999999999999999998753
No 41
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.77 E-value=8.7e-19 Score=117.90 Aligned_cols=67 Identities=39% Similarity=0.655 Sum_probs=62.6
Q ss_pred CCCCCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHcCCChhhHHHHHhhhhhhHHHhhhccc
Q psy11996 131 NGETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEHKMAS 197 (222)
Q Consensus 131 ~~~~~~~r~~~~~~q~~~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nrR~k~kk~~~~~~ 197 (222)
++..++.|+.|+.+|+.+|+..|..++||+..++..||..|||++.+|++||+|||+++|+..+...
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~~~~ 70 (80)
T 2cue_A 4 GSSGQRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKLRN 70 (80)
T ss_dssp CCSSCCCCCCSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCccCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHHHHHHHHHHHHHhhhhh
Confidence 3466788999999999999999999999999999999999999999999999999999999987654
No 42
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus}
Probab=99.77 E-value=3.3e-19 Score=114.16 Aligned_cols=60 Identities=33% Similarity=0.582 Sum_probs=53.1
Q ss_pred CCCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHcCCChhhHHHHHhhhhhhHHHh
Q psy11996 133 ETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKE 192 (222)
Q Consensus 133 ~~~~~r~~~~~~q~~~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nrR~k~kk~ 192 (222)
..++.|+.|+..|+.+|+..|..++||+..++..||..+||++.+|++||+|||+++|+.
T Consensus 2 ~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr~ 61 (62)
T 2vi6_A 2 TKQKMRTVFSQAQLCALKDRFQKQKYLSLQQMQELSSILNLSYKQVKTWFQNQRMKCKRW 61 (62)
T ss_dssp ------CCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCGGG
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhhHHhHHhhcchhhc
Confidence 457889999999999999999999999999999999999999999999999999999985
No 43
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=4.8e-19 Score=116.15 Aligned_cols=65 Identities=38% Similarity=0.639 Sum_probs=60.4
Q ss_pred CCCCCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHcCCChhhHHHHHhhhhhhHHHhhhc
Q psy11996 131 NGETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEHKM 195 (222)
Q Consensus 131 ~~~~~~~r~~~~~~q~~~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nrR~k~kk~~~~ 195 (222)
.+..++.|+.|+.+|+.+|+..|..++||+..++..||..+||++.+|++||+|||+++|+....
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~s 68 (70)
T 2djn_A 4 GSSGRKPRTIYSSFQLAALQRRFQKTQYLALPERAELAASLGLTQTQVKIWFQNKRSKIKKSGPS 68 (70)
T ss_dssp CCCCCCSSCSSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHSSCCHHHHHHHHHHHHHTCSSSSSS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHhhhhcccCCC
Confidence 44667889999999999999999999999999999999999999999999999999999986543
No 44
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B
Probab=99.77 E-value=8.3e-19 Score=118.30 Aligned_cols=65 Identities=37% Similarity=0.610 Sum_probs=59.6
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHhhcchhHHHHHhh
Q psy11996 6 ANGETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEHK 70 (222)
Q Consensus 6 ~~~~~~r~R~~~t~~q~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WF~nrR~k~~~~~~ 70 (222)
...+.++.|+.||..|+.+|+..|..++||+..++..||..+||++.+|++||+|||+++++...
T Consensus 14 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rk~~~ 78 (81)
T 1fjl_A 14 LKRKQRRSRTTFSASQLDELERAFERTQYPDIYTREELAQRTNLTEARIQVWFQNRRARLRKQHT 78 (81)
T ss_dssp ---CCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhhhhhhhcc
Confidence 34567889999999999999999999999999999999999999999999999999999998764
No 45
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A*
Probab=99.77 E-value=4.6e-19 Score=117.12 Aligned_cols=63 Identities=43% Similarity=0.682 Sum_probs=59.4
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHhhcchhHHHHHh
Q psy11996 7 NGETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEH 69 (222)
Q Consensus 7 ~~~~~r~R~~~t~~q~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WF~nrR~k~~~~~ 69 (222)
...+++.|+.||..|+.+|+..|..++||+..++..||..+||++.+|++||+|||+++++..
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~ 66 (73)
T 2l7z_A 4 MLEGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKVI 66 (73)
T ss_dssp SSCCCCCCCCSCHHHHHHHHHHHHHTSCCCHHHHHHHHHHHTSCSHHHHHHHHHHHHHHTTSS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHhhCCCcCHHHHHHHHHHHCCCHHHHHHHHHHHhHHHHHHh
Confidence 456788999999999999999999999999999999999999999999999999999998854
No 46
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=5e-19 Score=119.11 Aligned_cols=65 Identities=18% Similarity=0.315 Sum_probs=60.6
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHhhhC----CCCCHHHHHHHHHHhCCChHHHHHHhhcchhHHHHHh
Q psy11996 5 NANGETKRQRTSYTRYQTLELEKEFHFN----RYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEH 69 (222)
Q Consensus 5 ~~~~~~~r~R~~~t~~q~~~L~~~f~~~----~~p~~~~~~~la~~~~l~~~~v~~WF~nrR~k~~~~~ 69 (222)
....+.+|.|+.||.+|+.+|+..|..+ +||+..++++||..+||++.+|++||+|||+++++..
T Consensus 3 ~~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~~~~~yp~~~~r~~La~~lgL~~~qV~vWFqNrR~k~rk~~ 71 (80)
T 2da4_A 3 SGSSGALQDRTQFSDRDLATLKKYWDNGMTSLGSVCREKIEAVATELNVDCEIVRTWIGNRRRKYRLMG 71 (80)
T ss_dssp CCCCCCCCSSCCCCHHHHHHHHHHHTTTTTCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHhCCCHHHhhHhHHHHHHHHhhcc
Confidence 4456788999999999999999999999 9999999999999999999999999999999998853
No 47
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.77 E-value=5e-19 Score=116.11 Aligned_cols=65 Identities=28% Similarity=0.327 Sum_probs=60.6
Q ss_pred CCCCCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHcCCChhhHHHHHhhhhhhHHHhhhc
Q psy11996 131 NGETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEHKM 195 (222)
Q Consensus 131 ~~~~~~~r~~~~~~q~~~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nrR~k~kk~~~~ 195 (222)
....++.|+.|+.+|+.+|+..|..++||+..++..||..+||++.+|++||+|||+++|+..+.
T Consensus 4 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~~~ 68 (70)
T 2da1_A 4 GSSGKRPRTRITDDQLRVLRQYFDINNSPSEEQIKEMADKSGLPQKVIKHWFRNTLFKERQSGPS 68 (70)
T ss_dssp SCCCCSCSCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCCCHHHHHHHhhhhhHHHhhhccc
Confidence 34667889999999999999999999999999999999999999999999999999999997654
No 48
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P
Probab=99.77 E-value=4.1e-19 Score=115.80 Aligned_cols=65 Identities=42% Similarity=0.677 Sum_probs=61.2
Q ss_pred CCCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHcCCChhhHHHHHhhhhhhHHHhhhccc
Q psy11996 133 ETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEHKMAS 197 (222)
Q Consensus 133 ~~~~~r~~~~~~q~~~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nrR~k~kk~~~~~~ 197 (222)
..++.|+.|+..|+.+|+..|..++||+..++..||..+||++.+|++||+|||+++|+..+...
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~~~~~ 66 (68)
T 1yz8_P 2 SQRRQRTHFTSQQLQQLEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKREEFIV 66 (68)
T ss_dssp CSSCSCCCCCHHHHHHHHHHHTTCSSCCTTTTTHHHHHTTSCHHHHHHHHHHHHHHHHHHTTTSS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhHHHHHHhhccC
Confidence 56788999999999999999999999999999999999999999999999999999999887653
No 49
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.77 E-value=7.2e-19 Score=118.40 Aligned_cols=65 Identities=31% Similarity=0.405 Sum_probs=60.5
Q ss_pred CCCCCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHcCCChhhHHHHHhhhhhhHHHhhhc
Q psy11996 131 NGETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEHKM 195 (222)
Q Consensus 131 ~~~~~~~r~~~~~~q~~~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nrR~k~kk~~~~ 195 (222)
....++.|+.|+.+|+.+|+..|..++||+..++..||.+|||++.+|++||+|||+++|+....
T Consensus 14 ~~~~rr~Rt~ft~~Ql~~Le~~f~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~~ 78 (80)
T 2da3_A 14 PQRDKRLRTTITPEQLEILYQKYLLDSNPTRKMLDHIAHEVGLKKRVVQVWFQNTRARERKSGPS 78 (80)
T ss_dssp CCCCTTCCSSCCTTTHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHSSCCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhHHHhHHHHHhHhhhccC
Confidence 34667889999999999999999999999999999999999999999999999999999997653
No 50
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.77 E-value=1.3e-18 Score=114.50 Aligned_cols=57 Identities=19% Similarity=0.231 Sum_probs=54.1
Q ss_pred CCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHcCCChhhHHHHHhhhhhhHHHh
Q psy11996 136 RQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKE 192 (222)
Q Consensus 136 ~~r~~~~~~q~~~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nrR~k~kk~ 192 (222)
..+..||.+|+.+|+..|..++||+..++++||..+||++.||++||+|+|+++|+.
T Consensus 5 ~~r~kfT~~Ql~~Le~~F~~~~YPs~~er~~LA~~tgLte~qIkvWFqNrR~k~Kk~ 61 (76)
T 2ecc_A 5 SSGKRKTKEQLAILKSFFLQCQWARREDYQKLEQITGLPRPEIIQWFGDTRYALKHG 61 (76)
T ss_dssp CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCcCHHHhhHHhHhhHHHHHHH
Confidence 356789999999999999999999999999999999999999999999999999985
No 51
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=99.77 E-value=1.3e-18 Score=109.95 Aligned_cols=57 Identities=47% Similarity=0.774 Sum_probs=55.0
Q ss_pred CCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHcCCChhhHHHHHhhhhhhHHH
Q psy11996 135 KRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKK 191 (222)
Q Consensus 135 ~~~r~~~~~~q~~~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nrR~k~kk 191 (222)
++.|+.|+.+|+.+|+..|..++||+..++..||..+||++.+|++||+|||+++|+
T Consensus 1 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr 57 (58)
T 1ig7_A 1 RKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKR 57 (58)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhhhhhHhhhhhcc
Confidence 467899999999999999999999999999999999999999999999999999987
No 52
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.77 E-value=4.5e-19 Score=114.95 Aligned_cols=60 Identities=30% Similarity=0.375 Sum_probs=57.3
Q ss_pred CCCCCCCCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHhhcchhHHHHH
Q psy11996 9 ETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKE 68 (222)
Q Consensus 9 ~~~r~R~~~t~~q~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WF~nrR~k~~~~ 68 (222)
+.+|.|+.||.+|+.+|+..|..++||+..+++.||..+||++.+|++||+|||+++++.
T Consensus 2 k~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~ 61 (66)
T 1bw5_A 2 KTTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKKR 61 (66)
T ss_dssp CCSCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHCSSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHHHHHhHHHHHHHhHH
Confidence 468899999999999999999999999999999999999999999999999999998774
No 53
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.76 E-value=1.3e-18 Score=113.35 Aligned_cols=65 Identities=35% Similarity=0.625 Sum_probs=60.7
Q ss_pred CCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHcCCChhhHHHHHhhhhhhHHHhhhcccC
Q psy11996 134 TKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEHKMASM 198 (222)
Q Consensus 134 ~~~~r~~~~~~q~~~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nrR~k~kk~~~~~~~ 198 (222)
.++.|+.|+..|+.+|+..|..++||+..++..||..+||++.+|++||+|||+++|+..+...+
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~~~~~~~ 66 (68)
T 1ftt_A 2 RRKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQAKDKAA 66 (68)
T ss_dssp CSSSCSSCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTSCCSS
T ss_pred CCCCCCccCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhHHHhHHHhhhhhhhhhHhhh
Confidence 46789999999999999999999999999999999999999999999999999999998776543
No 54
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=99.76 E-value=8.7e-19 Score=111.79 Aligned_cols=58 Identities=52% Similarity=0.811 Sum_probs=53.2
Q ss_pred CCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHcCCChhhHHHHHhhhhhhHHH
Q psy11996 134 TKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKK 191 (222)
Q Consensus 134 ~~~~r~~~~~~q~~~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nrR~k~kk 191 (222)
.++.|+.|+..|+.+|+..|..++||+..++..||..+||++.+|++||+|||+++|+
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk 60 (61)
T 2hdd_A 3 EKRPRTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIKIWFKNKRAKIKK 60 (61)
T ss_dssp ----CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHhhhhcccccc
Confidence 4678999999999999999999999999999999999999999999999999999987
No 55
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A
Probab=99.76 E-value=2e-18 Score=115.29 Aligned_cols=65 Identities=65% Similarity=0.921 Sum_probs=60.9
Q ss_pred CCCCCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHcCCChhhHHHHHhhhhhhHHHhhhc
Q psy11996 131 NGETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEHKM 195 (222)
Q Consensus 131 ~~~~~~~r~~~~~~q~~~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nrR~k~kk~~~~ 195 (222)
....++.|+.|+..|+.+|+..|..++||+..++..||..+||++.+|++||+|||+++|+..+.
T Consensus 10 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~k~ 74 (77)
T 1puf_A 10 ARSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKINKD 74 (77)
T ss_dssp CCTTSCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhhhh
Confidence 34567889999999999999999999999999999999999999999999999999999998764
No 56
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster}
Probab=99.76 E-value=1.7e-18 Score=119.65 Aligned_cols=67 Identities=43% Similarity=0.760 Sum_probs=61.8
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHhhcchhHHHHHhhhh
Q psy11996 6 ANGETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEHKMA 72 (222)
Q Consensus 6 ~~~~~~r~R~~~t~~q~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WF~nrR~k~~~~~~~~ 72 (222)
...+.++.|+.||.+|+.+|+..|..++||+..++..||..+||++.+|++||+|||+++++.....
T Consensus 13 ~~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~~~~ 79 (93)
T 3a01_A 13 TPPKRKKPRTSFTRIQVAELEKRFHKQKYLASAERAALARGLKMTDAQVKTWFQNRRTKWRRQTAEE 79 (93)
T ss_dssp CCCCCCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHTCC
T ss_pred CCCCCCCCCcCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCChhhcccccHhhhhhhhhhhHHH
Confidence 4456788999999999999999999999999999999999999999999999999999999976533
No 57
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.76 E-value=1.6e-18 Score=114.24 Aligned_cols=60 Identities=27% Similarity=0.356 Sum_probs=57.0
Q ss_pred CCCCCCCCHHHHHHHHHHhhh-CCCCCHHHHHHHHHHhCCChHHHHHHhhcchhHHHHHhh
Q psy11996 11 KRQRTSYTRYQTLELEKEFHF-NRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEHK 70 (222)
Q Consensus 11 ~r~R~~~t~~q~~~L~~~f~~-~~~p~~~~~~~la~~~~l~~~~v~~WF~nrR~k~~~~~~ 70 (222)
.++|+.||.+|+.+|+..|.. ++||+..++..||..+||++.+|++||+|||+++++...
T Consensus 2 ~k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~rk~~~ 62 (72)
T 1uhs_A 2 SEGAATMTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSEG 62 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHSSCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCccCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHHHhhHHhHHHHHHHhhhcc
Confidence 567899999999999999996 999999999999999999999999999999999999764
No 58
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A
Probab=99.76 E-value=1.1e-18 Score=113.70 Aligned_cols=64 Identities=86% Similarity=1.312 Sum_probs=60.0
Q ss_pred CCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHcCCChhhHHHHHhhhhhhHHHhhhccc
Q psy11996 134 TKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEHKMAS 197 (222)
Q Consensus 134 ~~~~r~~~~~~q~~~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nrR~k~kk~~~~~~ 197 (222)
.++.|+.|+..|+.+|+..|..++||+..++..||..+||++.+|++||+|||+++|+..+...
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~~~~~ 65 (68)
T 1ahd_P 2 RKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKENKTKG 65 (68)
T ss_dssp CSCTTCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHSCCCS
T ss_pred CCCCCCCcCHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHhhhhHHhHHHHhHHhHhccccC
Confidence 4678999999999999999999999999999999999999999999999999999999876544
No 59
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens}
Probab=99.76 E-value=1.1e-18 Score=110.13 Aligned_cols=57 Identities=44% Similarity=0.711 Sum_probs=54.5
Q ss_pred CCCCCCCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHhhcchhHHH
Q psy11996 10 TKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWK 66 (222)
Q Consensus 10 ~~r~R~~~t~~q~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WF~nrR~k~~ 66 (222)
.++.|+.|+.+|+..|+..|..++||+..++..||..+||++.+|++||+|||++++
T Consensus 2 ~rr~Rt~~t~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~k 58 (58)
T 3rkq_A 2 RRKPRVLFSQAQVYELERRFKQQRYLSAPERDQLASVLKLTSTQVKIWFQNRRYKSK 58 (58)
T ss_dssp CCCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHC
T ss_pred cCCCCCCcCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHHHHhhHHhhccCC
Confidence 578899999999999999999999999999999999999999999999999999864
No 60
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=99.76 E-value=8.5e-19 Score=113.98 Aligned_cols=61 Identities=39% Similarity=0.580 Sum_probs=57.7
Q ss_pred CCCCCCCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHhhcchhHHHHHhh
Q psy11996 10 TKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEHK 70 (222)
Q Consensus 10 ~~r~R~~~t~~q~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WF~nrR~k~~~~~~ 70 (222)
+|+.|+.||.+|+.+|+..|..++||+..++..||..+||++.+|++||+|||+++++...
T Consensus 1 ~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~~~ 61 (67)
T 2k40_A 1 GRRPRTAFTQNQIEVLENVFRVNCYPGIDILEDLAQKLNLELDRIQIWFQNRRAKLKRSHR 61 (67)
T ss_dssp CCCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHCSCC
T ss_pred CcCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhhHhhHhHHHHHhHhch
Confidence 4788999999999999999999999999999999999999999999999999999988543
No 61
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.76 E-value=6.5e-19 Score=118.04 Aligned_cols=62 Identities=21% Similarity=0.256 Sum_probs=56.9
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHhhh-----CCCCCHHHHHHHHHHhCCChHHHHHHhhcchhHHHH
Q psy11996 5 NANGETKRQRTSYTRYQTLELEKEFHF-----NRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKK 67 (222)
Q Consensus 5 ~~~~~~~r~R~~~t~~q~~~L~~~f~~-----~~~p~~~~~~~la~~~~l~~~~v~~WF~nrR~k~~~ 67 (222)
....+.||.||.||.+|+..|+ .|.. ++||+..++++||..|||++.+|++||||||+|.++
T Consensus 12 ~~~~~~rR~Rt~ft~~Ql~~Le-~F~~~~~w~~~yp~~~~r~~La~~lgL~e~qVkvWFqNrR~k~~~ 78 (80)
T 1wh7_A 12 SSGGTTKRFRTKFTAEQKEKML-AFAERLGWRIQKHDDVAVEQFCAETGVRRQVLKIWMHNNKNSGPS 78 (80)
T ss_dssp CCCCCSSCCCCCCCHHHHHHHH-HHHHHHTSCCCSSTTHHHHHHHHHSCCCHHHHHHHHHTTSCCSCC
T ss_pred CCCCCCCCCCccCCHHHHHHHH-HHHHHcCcCCCCCCHHHHHHHHHHhCcCcCcccccccccccCCCC
Confidence 3455678999999999999999 7999 999999999999999999999999999999998754
No 62
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.76 E-value=2.3e-18 Score=113.26 Aligned_cols=57 Identities=19% Similarity=0.231 Sum_probs=54.0
Q ss_pred CCCCCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHhhcchhHHHHH
Q psy11996 12 RQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKE 68 (222)
Q Consensus 12 r~R~~~t~~q~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WF~nrR~k~~~~ 68 (222)
.+|..||.+|+.+|+..|..++||+..++++||..+||++.||++||+|+|+++|+.
T Consensus 5 ~~r~kfT~~Ql~~Le~~F~~~~YPs~~er~~LA~~tgLte~qIkvWFqNrR~k~Kk~ 61 (76)
T 2ecc_A 5 SSGKRKTKEQLAILKSFFLQCQWARREDYQKLEQITGLPRPEIIQWFGDTRYALKHG 61 (76)
T ss_dssp CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCcCHHHhhHHhHhhHHHHHHH
Confidence 446789999999999999999999999999999999999999999999999999884
No 63
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.76 E-value=1.7e-18 Score=110.11 Aligned_cols=58 Identities=53% Similarity=0.782 Sum_probs=55.4
Q ss_pred CCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHcCCChhhHHHHHhhhhhhHHHh
Q psy11996 135 KRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKE 192 (222)
Q Consensus 135 ~~~r~~~~~~q~~~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nrR~k~kk~ 192 (222)
++.|+.|+.+|+.+|+..|..++||+..++..||..+||++.+|++||+|||+++|+.
T Consensus 2 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~ 59 (60)
T 1jgg_A 2 RRYRTAFTRDQLGRLEKEFYKENYVSRPRRCELAAQLNLPESTIKVWFQNRRMKDKRQ 59 (60)
T ss_dssp -CCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHhhHHHHhHhhcc
Confidence 5789999999999999999999999999999999999999999999999999999985
No 64
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=99.76 E-value=9.9e-19 Score=111.16 Aligned_cols=58 Identities=43% Similarity=0.727 Sum_probs=50.7
Q ss_pred CCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHcCCChhhHHHHHhhhhhhHHHhhh
Q psy11996 137 QRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEHK 194 (222)
Q Consensus 137 ~r~~~~~~q~~~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nrR~k~kk~~~ 194 (222)
+|+.||.+|+.+|+..|..++||+..++..||..+||++.+|++||+|||+++|+..+
T Consensus 2 ~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~k 59 (60)
T 3a02_A 2 SHMTFTSFQLEELEKAFSRTHYPDVFTREELAMKIGLTEARIQVWFQNRRAKWRKQEK 59 (60)
T ss_dssp ---CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHC----
T ss_pred CCcccCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCcCHHHHHHHhhhhhhhhHhhcc
Confidence 5789999999999999999999999999999999999999999999999999999765
No 65
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=99.76 E-value=9e-19 Score=111.75 Aligned_cols=59 Identities=25% Similarity=0.445 Sum_probs=48.3
Q ss_pred CCCCCCCCCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHhhcchhHHH
Q psy11996 8 GETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWK 66 (222)
Q Consensus 8 ~~~~r~R~~~t~~q~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WF~nrR~k~~ 66 (222)
.+.++.|+.|+.+|+.+|+..|..++||+..++..||..+||++.+|++||+|||++++
T Consensus 3 ~k~rr~Rt~ft~~q~~~Le~~f~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~k 61 (61)
T 1akh_A 3 EKSPKGKSSISPQARAFLEEVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 61 (61)
T ss_dssp ---------CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhccC
Confidence 46788899999999999999999999999999999999999999999999999999864
No 66
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.75 E-value=2.9e-18 Score=113.28 Aligned_cols=61 Identities=26% Similarity=0.343 Sum_probs=57.3
Q ss_pred CCCCCCCCCHHHHHHHHHHhhh-CCCCCHHHHHHHHHHhCCChHHHHHHhhcchhHHHHHhh
Q psy11996 10 TKRQRTSYTRYQTLELEKEFHF-NRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEHK 70 (222)
Q Consensus 10 ~~r~R~~~t~~q~~~L~~~f~~-~~~p~~~~~~~la~~~~l~~~~v~~WF~nrR~k~~~~~~ 70 (222)
.++.|+.||.+|+.+|+..|.. ++||+..++..||..+||++.+|++||+|||+++++...
T Consensus 2 ~~k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~~~l~~~qV~~WFqNRR~k~rk~~~ 63 (73)
T 2hi3_A 2 SAQTVSGPTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSEG 63 (73)
T ss_dssp CCSCCSSCCHHHHHHHHHHHHHTTSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhcc
Confidence 3567899999999999999995 999999999999999999999999999999999999764
No 67
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1
Probab=99.75 E-value=1.5e-18 Score=120.92 Aligned_cols=64 Identities=59% Similarity=0.906 Sum_probs=57.0
Q ss_pred CCCCCCCCCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHhhcchhHHHHHhhh
Q psy11996 8 GETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEHKM 71 (222)
Q Consensus 8 ~~~~r~R~~~t~~q~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WF~nrR~k~~~~~~~ 71 (222)
+..++.|+.||.+|+.+|+..|..++||+..++..||..+||++.+|++||+|||+++++..+.
T Consensus 32 ~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~~ 95 (97)
T 1b72_A 32 GSPSGLRTNFTTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQVKIWFQNRRMKQKKRERE 95 (97)
T ss_dssp -----CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCcCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhHHHHHHHhHHHhHHhcc
Confidence 4678889999999999999999999999999999999999999999999999999999997654
No 68
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=99.75 E-value=1e-18 Score=111.09 Aligned_cols=58 Identities=43% Similarity=0.727 Sum_probs=50.6
Q ss_pred CCCCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHhhcchhHHHHHhh
Q psy11996 13 QRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEHK 70 (222)
Q Consensus 13 ~R~~~t~~q~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WF~nrR~k~~~~~~ 70 (222)
.|+.||.+|+.+|+..|..++||+..++..||..+||++.+|++||+|||+++++..+
T Consensus 2 ~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~k 59 (60)
T 3a02_A 2 SHMTFTSFQLEELEKAFSRTHYPDVFTREELAMKIGLTEARIQVWFQNRRAKWRKQEK 59 (60)
T ss_dssp ---CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHC----
T ss_pred CCcccCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCcCHHHHHHHhhhhhhhhHhhcc
Confidence 5899999999999999999999999999999999999999999999999999988653
No 69
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.75 E-value=3.3e-18 Score=111.43 Aligned_cols=63 Identities=40% Similarity=0.637 Sum_probs=59.3
Q ss_pred CCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHcCCChhhHHHHHhhhhhhHHHhhhcc
Q psy11996 134 TKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEHKMA 196 (222)
Q Consensus 134 ~~~~r~~~~~~q~~~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nrR~k~kk~~~~~ 196 (222)
.++.|+.|+..|+.+|+..|..++||+..++..||..+||++.+|++||+|||+++|+.....
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kk~~~~~ 64 (68)
T 1zq3_P 2 PRRTRTTFTSSQIAELEQHFLQGRYLTAPRLADLSAKLALGTAQVKIWFKNRRRRHKIQSDQH 64 (68)
T ss_dssp CSCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cCCCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHhhHHHHHHHHHHhccc
Confidence 467899999999999999999999999999999999999999999999999999999987654
No 70
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.75 E-value=3.1e-18 Score=118.92 Aligned_cols=67 Identities=27% Similarity=0.415 Sum_probs=62.8
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhC---------------CChHHHHHHhhcchhHHHHHhh
Q psy11996 6 ANGETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALC---------------LTERQIKIWFQNRRMKWKKEHK 70 (222)
Q Consensus 6 ~~~~~~r~R~~~t~~q~~~L~~~f~~~~~p~~~~~~~la~~~~---------------l~~~~v~~WF~nrR~k~~~~~~ 70 (222)
...+.+|.|+.|+.+|+.+||..|..++||+..+++.||..+| |++.+|++||+|||+++++...
T Consensus 3 ~~~~~rr~R~~ft~~ql~~Le~~F~~~~yP~~~~r~~lA~~l~~~~~~~~~~~~~~~~ls~~qV~~WFqNRR~k~kr~~~ 82 (95)
T 2cuf_A 3 SGSSGRGSRFTWRKECLAVMESYFNENQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYNWFANRRKEIKRRAN 82 (95)
T ss_dssp SSSCCCCCSCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHCCTTCCCCTTTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCchhhcccccccccCcCCHHHHHHHHHHHHHHHHHHhh
Confidence 4567889999999999999999999999999999999999999 9999999999999999999876
Q ss_pred hh
Q psy11996 71 MA 72 (222)
Q Consensus 71 ~~ 72 (222)
..
T Consensus 83 ~~ 84 (95)
T 2cuf_A 83 IA 84 (95)
T ss_dssp CC
T ss_pred cc
Confidence 53
No 71
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=3.3e-18 Score=113.59 Aligned_cols=61 Identities=23% Similarity=0.255 Sum_probs=57.0
Q ss_pred CCCCCCCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHhhcchhHHHHHhh
Q psy11996 10 TKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEHK 70 (222)
Q Consensus 10 ~~r~R~~~t~~q~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WF~nrR~k~~~~~~ 70 (222)
..++|+.||.+|+.+|+..|..++||+..++..||..+||++.+|++||+|||+++++..+
T Consensus 7 ~~~kr~~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~~ 67 (75)
T 2da5_A 7 GPTKYKERAPEQLRALESSFAQNPLPLDEELDRLRSETKMTRREIDSWFSERRKKVNAEET 67 (75)
T ss_dssp SSCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHTTHHHHSSC
T ss_pred CCCCCccCCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHhhHHHHHHHHHhhh
Confidence 4456788999999999999999999999999999999999999999999999999999654
No 72
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B
Probab=99.75 E-value=2.6e-18 Score=115.86 Aligned_cols=65 Identities=37% Similarity=0.609 Sum_probs=60.0
Q ss_pred CCCCCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHcCCChhhHHHHHhhhhhhHHHhhhc
Q psy11996 131 NGETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEHKM 195 (222)
Q Consensus 131 ~~~~~~~r~~~~~~q~~~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nrR~k~kk~~~~ 195 (222)
..+.++.|+.|+..|+.+|+..|..++||+..++..||..+||++.+|++||+|||+++|+....
T Consensus 15 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rk~~~~ 79 (81)
T 1fjl_A 15 KRKQRRSRTTFSASQLDELERAFERTQYPDIYTREELAQRTNLTEARIQVWFQNRRARLRKQHTS 79 (81)
T ss_dssp --CCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhhhhhhhccc
Confidence 44677889999999999999999999999999999999999999999999999999999998753
No 73
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A*
Probab=99.75 E-value=1.9e-18 Score=116.43 Aligned_cols=64 Identities=80% Similarity=1.171 Sum_probs=54.8
Q ss_pred CCCCCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHcCCChhhHHHHHhhhhhhHHHhhh
Q psy11996 131 NGETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEHK 194 (222)
Q Consensus 131 ~~~~~~~r~~~~~~q~~~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nrR~k~kk~~~ 194 (222)
.+..++.|+.|+..|+.+|+..|..++||+..++..||..+||++.+|++||+|||+|+|+..+
T Consensus 17 ~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~ 80 (81)
T 1b8i_A 17 NGLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALSLTERQIKIWFQNRRMKLKKEIQ 80 (81)
T ss_dssp -------CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTTC-
T ss_pred CCCCCCCCcccCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhhhhhhhcc
Confidence 3456788999999999999999999999999999999999999999999999999999998653
No 74
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.75 E-value=4.5e-18 Score=112.10 Aligned_cols=63 Identities=27% Similarity=0.367 Sum_probs=58.4
Q ss_pred CCCCCcCCHHHHHHHHHhhhh-cCCCCHHHHHHHHHHcCCChhhHHHHHhhhhhhHHHhhhccc
Q psy11996 135 KRQRTSYTRYQTLELEKEFHF-NRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEHKMAS 197 (222)
Q Consensus 135 ~~~r~~~~~~q~~~L~~~F~~-~~~p~~~~~~~la~~l~l~~~~V~~WF~nrR~k~kk~~~~~~ 197 (222)
.+.|+.|+.+|+.+|+..|.. ++||+..++..||..+||++.+|++||+|||+++|+..+...
T Consensus 2 ~k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~rk~~~~~~ 65 (72)
T 1uhs_A 2 SEGAATMTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSEGLPS 65 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHSSCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred CCCCccCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHHHhhHHhHHHHHHHhhhccCCC
Confidence 457899999999999999996 999999999999999999999999999999999999885543
No 75
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.75 E-value=2.6e-18 Score=108.66 Aligned_cols=60 Identities=22% Similarity=0.197 Sum_probs=56.5
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHhhh-CCCCCHHHHHHHHHHhCCChHHHHHHhhcchhHH
Q psy11996 6 ANGETKRQRTSYTRYQTLELEKEFHF-NRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKW 65 (222)
Q Consensus 6 ~~~~~~r~R~~~t~~q~~~L~~~f~~-~~~p~~~~~~~la~~~~l~~~~v~~WF~nrR~k~ 65 (222)
.+...+|.||.|+.+||.+|+..|+. ++||+...++.||..+||++++|++||||+|.-.
T Consensus 3 ~~~~~kR~RT~~s~eQL~~Lqs~f~~~~~yPd~~~r~~La~~tGL~~~~IqVWFQNrR~~~ 63 (71)
T 1wi3_A 3 SGSSGPRSRTKISLEALGILQSFIHDVGLYPDQEAIHTLSAQLDLPKHTIIKFFQNQRYHV 63 (71)
T ss_dssp CCCCCCCCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCCccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHhhccceeee
Confidence 45678999999999999999999999 9999999999999999999999999999999753
No 76
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster}
Probab=99.75 E-value=4.3e-18 Score=117.62 Aligned_cols=67 Identities=43% Similarity=0.756 Sum_probs=61.6
Q ss_pred CCCCCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHcCCChhhHHHHHhhhhhhHHHhhhccc
Q psy11996 131 NGETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEHKMAS 197 (222)
Q Consensus 131 ~~~~~~~r~~~~~~q~~~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nrR~k~kk~~~~~~ 197 (222)
....++.|+.|+.+|+.+|+..|..++||+..++..||..+||++.+|++||+|||+|+|+......
T Consensus 14 ~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~~~~~ 80 (93)
T 3a01_A 14 PPKRKKPRTSFTRIQVAELEKRFHKQKYLASAERAALARGLKMTDAQVKTWFQNRRTKWRRQTAEER 80 (93)
T ss_dssp CCCCCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHTCC-
T ss_pred CCCCCCCCcCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCChhhcccccHhhhhhhhhhhHHHH
Confidence 3466788999999999999999999999999999999999999999999999999999999876544
No 77
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=1.1e-18 Score=116.21 Aligned_cols=65 Identities=15% Similarity=0.287 Sum_probs=59.0
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHhhcchhHHHHHhhh
Q psy11996 7 NGETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEHKM 71 (222)
Q Consensus 7 ~~~~~r~R~~~t~~q~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WF~nrR~k~~~~~~~ 71 (222)
.....+.|+.||.+|+.+|+..|..++||+..++++||..+||++.+|++||+|||+++++....
T Consensus 5 ~~~~~~~R~~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~kk~~~~ 69 (76)
T 2dn0_A 5 SSGASIYKNKKSHEQLSALKGSFCRNQFPGQSEVEHLTKVTGLSTREVRKWFSDRRYHCRNLKGS 69 (76)
T ss_dssp CSCCCCCCCCCCHHHHHHHHHHHHHSSSCCSHHHHHHHHHHCCCHHHHHHHHHHHHHHSSSCCSS
T ss_pred CCCCCCCCccCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChHHhhHHhHHHhHHHHHhccc
Confidence 33456678999999999999999999999999999999999999999999999999999886543
No 78
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=99.75 E-value=2.3e-18 Score=111.93 Aligned_cols=62 Identities=39% Similarity=0.572 Sum_probs=58.5
Q ss_pred CCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHcCCChhhHHHHHhhhhhhHHHhhhcc
Q psy11996 135 KRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEHKMA 196 (222)
Q Consensus 135 ~~~r~~~~~~q~~~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nrR~k~kk~~~~~ 196 (222)
++.|+.|+.+|+.+|+..|..++||+..++..||..+||++.+|++||+|||+++|+.....
T Consensus 2 rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~~~~~ 63 (67)
T 2k40_A 2 RRPRTAFTQNQIEVLENVFRVNCYPGIDILEDLAQKLNLELDRIQIWFQNRRAKLKRSHRES 63 (67)
T ss_dssp CCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHCSCCTT
T ss_pred cCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhhHhhHhHHHHHhHhchhc
Confidence 67899999999999999999999999999999999999999999999999999999876543
No 79
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.75 E-value=5.6e-18 Score=111.93 Aligned_cols=63 Identities=27% Similarity=0.352 Sum_probs=58.5
Q ss_pred CCCCCcCCHHHHHHHHHhhhh-cCCCCHHHHHHHHHHcCCChhhHHHHHhhhhhhHHHhhhccc
Q psy11996 135 KRQRTSYTRYQTLELEKEFHF-NRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEHKMAS 197 (222)
Q Consensus 135 ~~~r~~~~~~q~~~L~~~F~~-~~~p~~~~~~~la~~l~l~~~~V~~WF~nrR~k~kk~~~~~~ 197 (222)
.+.|+.|+.+|+.+|+..|.. ++||+..++..||..+||++.+|++||+|||+++|+..+...
T Consensus 3 ~k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~~~l~~~qV~~WFqNRR~k~rk~~~~~~ 66 (73)
T 2hi3_A 3 AQTVSGPTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSEGLPS 66 (73)
T ss_dssp CSCCSSCCHHHHHHHHHHHHHTTSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHTCCS
T ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhccCCC
Confidence 467899999999999999995 999999999999999999999999999999999999886543
No 80
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.75 E-value=2.7e-18 Score=115.19 Aligned_cols=61 Identities=16% Similarity=0.197 Sum_probs=57.4
Q ss_pred CCCCCCCCCcCCHHHHHHHHHhhhh----cCCCCHHHHHHHHHHcCCChhhHHHHHhhhhhhHHH
Q psy11996 131 NGETKRQRTSYTRYQTLELEKEFHF----NRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKK 191 (222)
Q Consensus 131 ~~~~~~~r~~~~~~q~~~L~~~F~~----~~~p~~~~~~~la~~l~l~~~~V~~WF~nrR~k~kk 191 (222)
....++.|+.|+.+|+.+|+..|+. ++||+..++++||..|||++.+|++||||||+|.|+
T Consensus 14 ~~~~rR~Rt~ft~~Ql~~Le~~f~~~~~~~~yp~~~~r~~La~~lgL~~~~VkvWFqNrRaK~~~ 78 (80)
T 1wh5_A 14 GGIRKRHRTKFTAEQKERMLALAERIGWRIQRQDDEVIQRFCQETGVPRQVLKVWLHNNKHSGPS 78 (80)
T ss_dssp CCCSCCCSCCCCHHHHHHHHHHHHHHTSCCCTTTHHHHHHHHHHSCCCHHHHHHHHHHHSSSSSC
T ss_pred CCCCCCCCccCCHHHHHHHHHHHHhccCcCCCcCHHHHHHHHHHhCCCcccccCCccccCcCCCC
Confidence 3467888999999999999999999 999999999999999999999999999999999875
No 81
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.75 E-value=1.5e-18 Score=112.46 Aligned_cols=60 Identities=30% Similarity=0.367 Sum_probs=57.4
Q ss_pred CCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHcCCChhhHHHHHhhhhhhHHHhh
Q psy11996 134 TKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEH 193 (222)
Q Consensus 134 ~~~~r~~~~~~q~~~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nrR~k~kk~~ 193 (222)
.++.|+.|+.+|+.+|+..|..++||+..++..||..+||++.+|++||+|||+++|+..
T Consensus 3 ~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 62 (66)
T 1bw5_A 3 TTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKKRS 62 (66)
T ss_dssp CSCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHCSSCC
T ss_pred CCCCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHHHHHhHHHHHHHhHHh
Confidence 567899999999999999999999999999999999999999999999999999998865
No 82
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A*
Probab=99.75 E-value=3.6e-18 Score=112.83 Aligned_cols=64 Identities=42% Similarity=0.679 Sum_probs=59.7
Q ss_pred CCCCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHcCCChhhHHHHHhhhhhhHHHhhhc
Q psy11996 132 GETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEHKM 195 (222)
Q Consensus 132 ~~~~~~r~~~~~~q~~~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nrR~k~kk~~~~ 195 (222)
...++.|+.|+..|+.+|+..|..++||+..++..||..+||++.+|++||+|||+++|+....
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~~ 68 (73)
T 2l7z_A 5 LEGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKVINK 68 (73)
T ss_dssp SCCCCCCCCSCHHHHHHHHHHHHHTSCCCHHHHHHHHHHHTSCSHHHHHHHHHHHHHHTTSSSS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHhhCCCcCHHHHHHHHHHHCCCHHHHHHHHHHHhHHHHHHhcc
Confidence 3567889999999999999999999999999999999999999999999999999999986543
No 83
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.74 E-value=4.6e-18 Score=112.38 Aligned_cols=65 Identities=22% Similarity=0.246 Sum_probs=60.1
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHhhh---CCCCCHHHHHHHHHHhCCChHHHHHHhhcchhHHHHHhh
Q psy11996 6 ANGETKRQRTSYTRYQTLELEKEFHF---NRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEHK 70 (222)
Q Consensus 6 ~~~~~~r~R~~~t~~q~~~L~~~f~~---~~~p~~~~~~~la~~~~l~~~~v~~WF~nrR~k~~~~~~ 70 (222)
...+.++.|+.|+.+|+.+|+.+|.. ++||+..+++.||..+||++.+|++||+|+|++.++...
T Consensus 3 ~~~~~rr~R~~~~~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~~ 70 (73)
T 1x2n_A 3 SGSSGKNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRRILQSGP 70 (73)
T ss_dssp CCSSSCCSSCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTTT
T ss_pred CCCCCCCCCCcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHCcCHHHHHHHhHHHHhhcccccc
Confidence 45678889999999999999999977 999999999999999999999999999999999998643
No 84
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=99.74 E-value=3.1e-18 Score=107.29 Aligned_cols=54 Identities=48% Similarity=0.883 Sum_probs=50.9
Q ss_pred CCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHhhcchhHHHHH
Q psy11996 15 TSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKE 68 (222)
Q Consensus 15 ~~~t~~q~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WF~nrR~k~~~~ 68 (222)
|.||.+|+.+|+..|..++||+..++.+||..+||++.+|++||+|||+++++.
T Consensus 2 T~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~ 55 (56)
T 3a03_A 2 TSFSRSQVLELERRFLRQKYLASAERAALAKALRMTDAQVKTWFQNRRTKWRRQ 55 (56)
T ss_dssp --CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHhcCCcCHHHHHHHHHHhCcCHHHhhHhhHHhhhhhccc
Confidence 679999999999999999999999999999999999999999999999999985
No 85
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.74 E-value=1.1e-17 Score=113.85 Aligned_cols=64 Identities=19% Similarity=0.196 Sum_probs=59.0
Q ss_pred cCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHcCCChhhHHHHHhhhhhhHHHhhhcccCCCCCC
Q psy11996 140 SYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEHKMASMNVIPY 203 (222)
Q Consensus 140 ~~~~~q~~~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nrR~k~kk~~~~~~~~~~~~ 203 (222)
.||.+|+.+|+..|..++||+..++.+||..|||++.||++||+|||+|+++..+...+.....
T Consensus 17 ~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~lgLte~qVkvWFqNRR~k~rk~~~~~~~~~~~~ 80 (89)
T 2ecb_A 17 EKTAEQLRVLQASFLNSSVLTDEELNRLRAQTKLTRREIDAWFTEKKKSKALKEEKMEIDESNA 80 (89)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHSCCSCCCCCCCCC
T ss_pred cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCcChHHCeecccccchHHHHHHHHhhcccCCC
Confidence 7999999999999999999999999999999999999999999999999999877766655543
No 86
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.74 E-value=6e-18 Score=115.14 Aligned_cols=59 Identities=20% Similarity=0.224 Sum_probs=54.9
Q ss_pred CCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHhhcchhHHHHHhhhhc
Q psy11996 15 TSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEHKMAS 73 (222)
Q Consensus 15 ~~~t~~q~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WF~nrR~k~~~~~~~~~ 73 (222)
..||.+||.+||..|..++||+..++.+||..|||++.||++||+|||+++++.+....
T Consensus 16 k~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~lgLte~qVkvWFqNRR~k~rk~~~~~~ 74 (89)
T 2ecb_A 16 KEKTAEQLRVLQASFLNSSVLTDEELNRLRAQTKLTRREIDAWFTEKKKSKALKEEKME 74 (89)
T ss_dssp CCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHSCCSCCC
T ss_pred ccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCcChHHCeecccccchHHHHHHHHhh
Confidence 38999999999999999999999999999999999999999999999999998665444
No 87
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=99.74 E-value=3.7e-18 Score=106.94 Aligned_cols=54 Identities=48% Similarity=0.883 Sum_probs=51.0
Q ss_pred CcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHcCCChhhHHHHHhhhhhhHHHh
Q psy11996 139 TSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKE 192 (222)
Q Consensus 139 ~~~~~~q~~~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nrR~k~kk~ 192 (222)
+.|+.+|+.+|+..|..++||+..++..||..+||++.+|++||+|||+|+|+.
T Consensus 2 T~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~ 55 (56)
T 3a03_A 2 TSFSRSQVLELERRFLRQKYLASAERAALAKALRMTDAQVKTWFQNRRTKWRRQ 55 (56)
T ss_dssp --CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHhcCCcCHHHHHHHHHHhCcCHHHhhHhhHHhhhhhccc
Confidence 579999999999999999999999999999999999999999999999999985
No 88
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=99.74 E-value=1.1e-17 Score=113.19 Aligned_cols=68 Identities=15% Similarity=0.168 Sum_probs=61.4
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHhhh---CCCCCHHHHHHHHHHhCCChHHHHHHhhcchhHHHHHhhhhc
Q psy11996 6 ANGETKRQRTSYTRYQTLELEKEFHF---NRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEHKMAS 73 (222)
Q Consensus 6 ~~~~~~r~R~~~t~~q~~~L~~~f~~---~~~p~~~~~~~la~~~~l~~~~v~~WF~nrR~k~~~~~~~~~ 73 (222)
++.+.++.|+.|+.+|+.+|+.+|.. ++||+..+++.||..+||++.||++||+|+|++.++......
T Consensus 3 ~~~~~rk~R~~~s~~q~~~L~~~f~~~~~~pYPs~~~r~~LA~~~gLs~~qV~~WFqNrR~r~k~~~~~~~ 73 (83)
T 2dmn_A 3 SGSSGKKRKGNLPAESVKILRDWMYKHRFKAYPSEEEKQMLSEKTNLSLLQISNWFINARRRILPDMLQQR 73 (83)
T ss_dssp CCCCCCCCCSSCCHHHHHHHHHHHHHTTTTCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTHHHHTCCC
T ss_pred CCCCCCCCCCcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHhhHHhhhhHhhhcHHHHHhc
Confidence 45678889999999999999999987 599999999999999999999999999999999988755443
No 89
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.74 E-value=2.9e-18 Score=113.68 Aligned_cols=63 Identities=22% Similarity=0.325 Sum_probs=58.7
Q ss_pred CCCCCCCCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHhhcchhHHHHHhhh
Q psy11996 9 ETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEHKM 71 (222)
Q Consensus 9 ~~~r~R~~~t~~q~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WF~nrR~k~~~~~~~ 71 (222)
..++.|+.||.+|+.+|+..|..++||+..++++||..+||++.+|++||+|||+++++....
T Consensus 5 ~~~~~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~~ 67 (74)
T 2ly9_A 5 DSFGIRAKKTKEQLAELKVSYLKNQFPHDSEIIRLMKITGLTKGEIKKWFSDTRYNQRNSKSN 67 (74)
T ss_dssp CCCCTTCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTTTCS
T ss_pred CCCCCCcCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHeeeCChhHhHHHHhhCcC
Confidence 457789999999999999999999999999999999999999999999999999999986543
No 90
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.74 E-value=4.9e-18 Score=112.53 Aligned_cols=66 Identities=21% Similarity=0.317 Sum_probs=60.8
Q ss_pred CCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHcCCChhhHHHHHhhhhhhHHHhhhcccCC
Q psy11996 134 TKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEHKMASMN 199 (222)
Q Consensus 134 ~~~~r~~~~~~q~~~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nrR~k~kk~~~~~~~~ 199 (222)
.++.|+.|+.+|+.+|+..|..++||+..++..||..+||++.+|++||+|||+++|+......+.
T Consensus 6 ~~~~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~~~~~~ 71 (74)
T 2ly9_A 6 SFGIRAKKTKEQLAELKVSYLKNQFPHDSEIIRLMKITGLTKGEIKKWFSDTRYNQRNSKSNQCLH 71 (74)
T ss_dssp CCCTTCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTTTCSCCTT
T ss_pred CCCCCcCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHeeeCChhHhHHHHhhCcCCCCC
Confidence 456799999999999999999999999999999999999999999999999999999987765543
No 91
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=3.8e-18 Score=114.79 Aligned_cols=63 Identities=19% Similarity=0.318 Sum_probs=59.0
Q ss_pred CCCCCCCCCcCCHHHHHHHHHhhhhc----CCCCHHHHHHHHHHcCCChhhHHHHHhhhhhhHHHhh
Q psy11996 131 NGETKRQRTSYTRYQTLELEKEFHFN----RYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEH 193 (222)
Q Consensus 131 ~~~~~~~r~~~~~~q~~~L~~~F~~~----~~p~~~~~~~la~~l~l~~~~V~~WF~nrR~k~kk~~ 193 (222)
....++.|+.|+.+|+.+|+..|..+ +||+..++++||.++||++.+|++||+|||+|+|+..
T Consensus 5 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~~~~~yp~~~~r~~La~~lgL~~~qV~vWFqNrR~k~rk~~ 71 (80)
T 2da4_A 5 SSGALQDRTQFSDRDLATLKKYWDNGMTSLGSVCREKIEAVATELNVDCEIVRTWIGNRRRKYRLMG 71 (80)
T ss_dssp CCCCCCSSCCCCHHHHHHHHHHHTTTTTCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHhCCCHHHhhHhHHHHHHHHhhcc
Confidence 34667889999999999999999999 9999999999999999999999999999999999854
No 92
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=3.9e-18 Score=113.58 Aligned_cols=64 Identities=17% Similarity=0.276 Sum_probs=58.8
Q ss_pred CCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHcCCChhhHHHHHhhhhhhHHHhhhcccC
Q psy11996 135 KRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEHKMASM 198 (222)
Q Consensus 135 ~~~r~~~~~~q~~~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nrR~k~kk~~~~~~~ 198 (222)
...|+.|+.+|+.+|+..|..++||+..++..||..+||++.+|++||+|||+++|+..+...+
T Consensus 9 ~~~R~~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~kk~~~~~~~ 72 (76)
T 2dn0_A 9 SIYKNKKSHEQLSALKGSFCRNQFPGQSEVEHLTKVTGLSTREVRKWFSDRRYHCRNLKGSRSG 72 (76)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHSSSCCSHHHHHHHHHHCCCHHHHHHHHHHHHHHSSSCCSSSCC
T ss_pred CCCCccCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChHHhhHHhHHHhHHHHHhcccCCC
Confidence 3458999999999999999999999999999999999999999999999999999997765443
No 93
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens}
Probab=99.73 E-value=6.2e-18 Score=106.74 Aligned_cols=57 Identities=44% Similarity=0.711 Sum_probs=54.2
Q ss_pred CCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHcCCChhhHHHHHhhhhhhHH
Q psy11996 134 TKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWK 190 (222)
Q Consensus 134 ~~~~r~~~~~~q~~~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nrR~k~k 190 (222)
.++.|+.|+..|+.+|+..|..++||+..++..||..+||++.+|++||+|||+++|
T Consensus 2 ~rr~Rt~~t~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~k 58 (58)
T 3rkq_A 2 RRKPRVLFSQAQVYELERRFKQQRYLSAPERDQLASVLKLTSTQVKIWFQNRRYKSK 58 (58)
T ss_dssp CCCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHC
T ss_pred cCCCCCCcCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHHHHhhHHhhccCC
Confidence 356799999999999999999999999999999999999999999999999999875
No 94
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=99.73 E-value=4.1e-18 Score=108.65 Aligned_cols=59 Identities=25% Similarity=0.445 Sum_probs=48.4
Q ss_pred CCCCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHcCCChhhHHHHHhhhhhhHH
Q psy11996 132 GETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWK 190 (222)
Q Consensus 132 ~~~~~~r~~~~~~q~~~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nrR~k~k 190 (222)
...++.|+.|+..|+.+|+..|..++||+..++..||..+||++.+|++||+|||+++|
T Consensus 3 ~k~rr~Rt~ft~~q~~~Le~~f~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~k 61 (61)
T 1akh_A 3 EKSPKGKSSISPQARAFLEEVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 61 (61)
T ss_dssp ---------CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhccC
Confidence 35677899999999999999999999999999999999999999999999999999875
No 95
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.73 E-value=5.4e-18 Score=113.52 Aligned_cols=60 Identities=22% Similarity=0.253 Sum_probs=56.1
Q ss_pred CCCCCCCCCcCCHHHHHHHHHhhhh-----cCCCCHHHHHHHHHHcCCChhhHHHHHhhhhhhHHH
Q psy11996 131 NGETKRQRTSYTRYQTLELEKEFHF-----NRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKK 191 (222)
Q Consensus 131 ~~~~~~~r~~~~~~q~~~L~~~F~~-----~~~p~~~~~~~la~~l~l~~~~V~~WF~nrR~k~kk 191 (222)
....++.|+.|+.+|+.+|+ .|.. ++||+..++++||.+|||++.+|++||||||+|+++
T Consensus 14 ~~~~rR~Rt~ft~~Ql~~Le-~F~~~~~w~~~yp~~~~r~~La~~lgL~e~qVkvWFqNrR~k~~~ 78 (80)
T 1wh7_A 14 GGTTKRFRTKFTAEQKEKML-AFAERLGWRIQKHDDVAVEQFCAETGVRRQVLKIWMHNNKNSGPS 78 (80)
T ss_dssp CCCSSCCCCCCCHHHHHHHH-HHHHHHTSCCCSSTTHHHHHHHHHSCCCHHHHHHHHHTTSCCSCC
T ss_pred CCCCCCCCccCCHHHHHHHH-HHHHHcCcCCCCCCHHHHHHHHHHhCcCcCcccccccccccCCCC
Confidence 34678889999999999999 7999 999999999999999999999999999999999875
No 96
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=1.5e-17 Score=110.40 Aligned_cols=60 Identities=23% Similarity=0.261 Sum_probs=56.3
Q ss_pred CCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHcCCChhhHHHHHhhhhhhHHHhhhc
Q psy11996 136 RQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEHKM 195 (222)
Q Consensus 136 ~~r~~~~~~q~~~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nrR~k~kk~~~~ 195 (222)
+++..||.+|+.+|+..|..++||+..++..||..+||++.+|++||+|||+++|+..+.
T Consensus 9 ~kr~~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~~~ 68 (75)
T 2da5_A 9 TKYKERAPEQLRALESSFAQNPLPLDEELDRLRSETKMTRREIDSWFSERRKKVNAEETK 68 (75)
T ss_dssp CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHTTHHHHSSCS
T ss_pred CCCccCCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHhhHHHHHHHHHhhhc
Confidence 356779999999999999999999999999999999999999999999999999997654
No 97
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Probab=99.72 E-value=9.9e-18 Score=110.75 Aligned_cols=61 Identities=28% Similarity=0.496 Sum_probs=57.5
Q ss_pred CCCCCCCCCHHHHHHHHHHh---hhCCCCCHHHHHHHHHHhCCChHHHHHHhhcchhHHHHHhh
Q psy11996 10 TKRQRTSYTRYQTLELEKEF---HFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEHK 70 (222)
Q Consensus 10 ~~r~R~~~t~~q~~~L~~~f---~~~~~p~~~~~~~la~~~~l~~~~v~~WF~nrR~k~~~~~~ 70 (222)
.||+|+.|+..|+.+|+.+| ..++||+..++..||..+||++.+|++||+|+|+++++...
T Consensus 1 ~rr~R~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~~ 64 (73)
T 1puf_B 1 ARRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIG 64 (73)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCTT
T ss_pred CCCCCCcCCHHHHHHHHHHHHHhccCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhcccccc
Confidence 36889999999999999999 89999999999999999999999999999999999998654
No 98
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.72 E-value=2.1e-17 Score=114.68 Aligned_cols=65 Identities=28% Similarity=0.420 Sum_probs=61.4
Q ss_pred CCCCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHcC---------------CChhhHHHHHhhhhhhHHHhhhcc
Q psy11996 132 GETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALC---------------LTERQIKIWFQNRRMKWKKEHKMA 196 (222)
Q Consensus 132 ~~~~~~r~~~~~~q~~~L~~~F~~~~~p~~~~~~~la~~l~---------------l~~~~V~~WF~nrR~k~kk~~~~~ 196 (222)
.+.++.|+.|+..|+.+|+..|..++||+..+++.||..++ |++.+|++||+|||+++|+..+..
T Consensus 5 ~~~rr~R~~ft~~ql~~Le~~F~~~~yP~~~~r~~lA~~l~~~~~~~~~~~~~~~~ls~~qV~~WFqNRR~k~kr~~~~~ 84 (95)
T 2cuf_A 5 SSGRGSRFTWRKECLAVMESYFNENQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYNWFANRRKEIKRRANIA 84 (95)
T ss_dssp SCCCCCSCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHCCTTCCCCTTTCCCHHHHHHHHHHHHHHHHHHHHCC
T ss_pred CCCCCCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCchhhcccccccccCcCCHHHHHHHHHHHHHHHHHHhhcc
Confidence 46678899999999999999999999999999999999999 999999999999999999988763
No 99
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=3.1e-17 Score=113.59 Aligned_cols=66 Identities=21% Similarity=0.333 Sum_probs=61.6
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHh---------------------CCChHHHHHHhhcchhHH
Q psy11996 7 NGETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHAL---------------------CLTERQIKIWFQNRRMKW 65 (222)
Q Consensus 7 ~~~~~r~R~~~t~~q~~~L~~~f~~~~~p~~~~~~~la~~~---------------------~l~~~~v~~WF~nrR~k~ 65 (222)
..+.||.|+.|++.|+.+|+..|..++||+..++++||..+ +|++.+|++||+|||+++
T Consensus 3 ~~~~Rr~Rt~ft~~ql~~Le~~F~~~~yPs~~~Re~LA~~ln~~~c~q~g~~~~~~~GL~~~~lte~~V~~WFqNRR~k~ 82 (102)
T 2da6_A 3 SGSSGRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKEE 82 (102)
T ss_dssp TCCSCCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHTSCCTTCGGGGGGGCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCccCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHhhhcccccccchhcccccccccccceeeeecchHHHH
Confidence 45688999999999999999999999999999999999999 799999999999999999
Q ss_pred HHHhhhh
Q psy11996 66 KKEHKMA 72 (222)
Q Consensus 66 ~~~~~~~ 72 (222)
+++.+..
T Consensus 83 kr~~~~~ 89 (102)
T 2da6_A 83 AFRQKLA 89 (102)
T ss_dssp HHHHHHH
T ss_pred HHhhHhh
Confidence 9876654
No 100
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P
Probab=99.72 E-value=4.8e-18 Score=116.14 Aligned_cols=63 Identities=27% Similarity=0.461 Sum_probs=57.5
Q ss_pred CCCCCCCCCHHHHHHHHHHh---hhCCCCCHHHHHHHHHHhCCChHHHHHHhhcchhHHHHHhhhh
Q psy11996 10 TKRQRTSYTRYQTLELEKEF---HFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEHKMA 72 (222)
Q Consensus 10 ~~r~R~~~t~~q~~~L~~~f---~~~~~p~~~~~~~la~~~~l~~~~v~~WF~nrR~k~~~~~~~~ 72 (222)
.||.|+.|+.+|+.+|+.+| ..++||+..++..||..+||++.+|++||+|+|+++++.....
T Consensus 1 ~rr~R~~ft~~q~~~Le~~f~~h~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~~~ 66 (87)
T 1b72_B 1 ARRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGKF 66 (87)
T ss_dssp --CCCCCCCHHHHHHHHHHHHTTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCGGGG
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhccccc
Confidence 36889999999999999999 8999999999999999999999999999999999999865443
No 101
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.72 E-value=4.4e-18 Score=109.59 Aligned_cols=59 Identities=25% Similarity=0.399 Sum_probs=55.9
Q ss_pred CCCCCCCCCCHHHHHHHHHHh---hhCCCCCHHHHHHHHHHhCCChHHHHHHhhcchhHHHH
Q psy11996 9 ETKRQRTSYTRYQTLELEKEF---HFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKK 67 (222)
Q Consensus 9 ~~~r~R~~~t~~q~~~L~~~f---~~~~~p~~~~~~~la~~~~l~~~~v~~WF~nrR~k~~~ 67 (222)
.+++.|+.|+.+|+.+|+.+| ..++||+..+++.||..+||++.+|++||+|+|+++++
T Consensus 2 ~~rr~R~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk 63 (64)
T 1du6_A 2 SGHIEGRHMNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKK 63 (64)
T ss_dssp CCCCCCCSSTTTHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHTTTSSC
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHcccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhcc
Confidence 467889999999999999999 89999999999999999999999999999999998764
No 102
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens}
Probab=99.71 E-value=1e-17 Score=116.51 Aligned_cols=62 Identities=19% Similarity=0.291 Sum_probs=56.0
Q ss_pred CCCCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHcCCChhhHHHHHhhhhhhHHHhh
Q psy11996 132 GETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEH 193 (222)
Q Consensus 132 ~~~~~~r~~~~~~q~~~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nrR~k~kk~~ 193 (222)
...++.|+.|+.+|+.+|+..|..++||+..++..||..+||++.+|++||+|||+|+|+..
T Consensus 23 ~~~~r~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~~ 84 (96)
T 3nar_A 23 SGSTGKICKKTPEQLHMLKSAFVRTQWPSPEEYDKLAKESGLARTDIVSWFGDTRYAWKNGN 84 (96)
T ss_dssp ----CCSSSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTTC
T ss_pred CCCCCCCccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHeeecchhhhhHhhhhc
Confidence 34567889999999999999999999999999999999999999999999999999999863
No 103
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.71 E-value=2.7e-17 Score=108.68 Aligned_cols=64 Identities=22% Similarity=0.235 Sum_probs=59.0
Q ss_pred CCCCCCCCcCCHHHHHHHHHhhhh---cCCCCHHHHHHHHHHcCCChhhHHHHHhhhhhhHHHhhhc
Q psy11996 132 GETKRQRTSYTRYQTLELEKEFHF---NRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEHKM 195 (222)
Q Consensus 132 ~~~~~~r~~~~~~q~~~L~~~F~~---~~~p~~~~~~~la~~l~l~~~~V~~WF~nrR~k~kk~~~~ 195 (222)
+..++.|+.|+..|+.+|+.+|.. ++||+..+++.||..+||+..||++||+|+|+++++....
T Consensus 5 ~~~rr~R~~~~~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~~~ 71 (73)
T 1x2n_A 5 SSGKNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRRILQSGPS 71 (73)
T ss_dssp SSSCCSSCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTTTS
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHCcCHHHHHHHhHHHHhhccccccc
Confidence 456778999999999999999987 9999999999999999999999999999999999987543
No 104
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=99.71 E-value=1.5e-17 Score=105.56 Aligned_cols=53 Identities=19% Similarity=0.341 Sum_probs=50.6
Q ss_pred CCHHHHHHHHHhhhhcCCCCHHHHHHHHHHcCCChhhHHHHHhhhhhhHHHhh
Q psy11996 141 YTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEH 193 (222)
Q Consensus 141 ~~~~q~~~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nrR~k~kk~~ 193 (222)
-+.+|+.+|+..|..++||+..++++||..+||++.+|++||+|||+++|+..
T Consensus 11 ~~~~Ql~~LE~~F~~~~YPs~~er~eLA~~tgLt~~qVkvWFqNRR~k~Kkg~ 63 (66)
T 3nau_A 11 KTKEQIAHLKASFLQSQFPDDAEVYRLIEVTGLARSEIKKWFSDHRYRCQRGI 63 (66)
T ss_dssp CCHHHHHHHHHHHHGGGSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCcCHHHhhHhcccchhhhhccC
Confidence 47899999999999999999999999999999999999999999999999753
No 105
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Probab=99.71 E-value=2.7e-17 Score=108.61 Aligned_cols=62 Identities=27% Similarity=0.465 Sum_probs=58.3
Q ss_pred CCCCCcCCHHHHHHHHHhh---hhcCCCCHHHHHHHHHHcCCChhhHHHHHhhhhhhHHHhhhcc
Q psy11996 135 KRQRTSYTRYQTLELEKEF---HFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEHKMA 196 (222)
Q Consensus 135 ~~~r~~~~~~q~~~L~~~F---~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nrR~k~kk~~~~~ 196 (222)
++.|+.|+..|+.+|+.+| ..++||+..++..||..+||+..+|++||+|+|+++|+.....
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~~~~ 66 (73)
T 1puf_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGKF 66 (73)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCTTTT
T ss_pred CCCCCcCCHHHHHHHHHHHHHhccCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhcccccccc
Confidence 5788999999999999999 8999999999999999999999999999999999999876553
No 106
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens}
Probab=99.71 E-value=1.2e-17 Score=116.09 Aligned_cols=63 Identities=19% Similarity=0.286 Sum_probs=55.5
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHhhcchhHHHHH
Q psy11996 6 ANGETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKE 68 (222)
Q Consensus 6 ~~~~~~r~R~~~t~~q~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WF~nrR~k~~~~ 68 (222)
.....+++|+.||.+|+.+|+..|..++||+..++++||..+||++.+|++||+|||+++|+.
T Consensus 21 ~~~~~~r~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~ 83 (96)
T 3nar_A 21 PKSGSTGKICKKTPEQLHMLKSAFVRTQWPSPEEYDKLAKESGLARTDIVSWFGDTRYAWKNG 83 (96)
T ss_dssp ------CCSSSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTT
T ss_pred CCCCCCCCCccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHeeecchhhhhHhhhh
Confidence 345567889999999999999999999999999999999999999999999999999999874
No 107
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=99.71 E-value=1.9e-17 Score=105.16 Aligned_cols=55 Identities=31% Similarity=0.377 Sum_probs=52.8
Q ss_pred CCCCCCHHHHHHHHHHhhh---CCCCCHHHHHHHHHHhCCChHHHHHHhhcchhHHHH
Q psy11996 13 QRTSYTRYQTLELEKEFHF---NRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKK 67 (222)
Q Consensus 13 ~R~~~t~~q~~~L~~~f~~---~~~p~~~~~~~la~~~~l~~~~v~~WF~nrR~k~~~ 67 (222)
+|+.|+.+|+.+|+..|.. ++||+..++..||..+||++.+|++||+|+|+++++
T Consensus 1 rr~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~gl~~~qV~~WFqNrR~r~kk 58 (60)
T 1k61_A 1 RGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKT 58 (60)
T ss_dssp CCCSCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHC
T ss_pred CcCcCCHHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHccccc
Confidence 3689999999999999999 999999999999999999999999999999999876
No 108
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=7.1e-17 Score=111.78 Aligned_cols=73 Identities=21% Similarity=0.327 Sum_probs=64.1
Q ss_pred CCCCCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHc---------------------CCChhhHHHHHhhhhhhH
Q psy11996 131 NGETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHAL---------------------CLTERQIKIWFQNRRMKW 189 (222)
Q Consensus 131 ~~~~~~~r~~~~~~q~~~L~~~F~~~~~p~~~~~~~la~~l---------------------~l~~~~V~~WF~nrR~k~ 189 (222)
.+..++.|+.|++.|+.+|+..|..++||+..++++||..+ +|++.+|++||+|||+++
T Consensus 3 ~~~~Rr~Rt~ft~~ql~~Le~~F~~~~yPs~~~Re~LA~~ln~~~c~q~g~~~~~~~GL~~~~lte~~V~~WFqNRR~k~ 82 (102)
T 2da6_A 3 SGSSGRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKEE 82 (102)
T ss_dssp TCCSCCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHTSCCTTCGGGGGGGCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCccCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHhhhcccccccchhcccccccccccceeeeecchHHHH
Confidence 34678889999999999999999999999999999999999 799999999999999999
Q ss_pred HHhhhcccCCCCCCC
Q psy11996 190 KKEHKMASMNVIPYH 204 (222)
Q Consensus 190 kk~~~~~~~~~~~~~ 204 (222)
++..+.. +...+..
T Consensus 83 kr~~~~~-~~~~~~~ 96 (102)
T 2da6_A 83 AFRQKLA-MDAYSSN 96 (102)
T ss_dssp HHHHHHH-HSSSSSS
T ss_pred HHhhHhh-hccccCC
Confidence 9987765 4444433
No 109
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.70 E-value=1.9e-17 Score=107.54 Aligned_cols=60 Identities=40% Similarity=0.687 Sum_probs=55.7
Q ss_pred CcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHcCCChhhHHHHHhhhhhhHHHhhhcccC
Q psy11996 139 TSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEHKMASM 198 (222)
Q Consensus 139 ~~~~~~q~~~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nrR~k~kk~~~~~~~ 198 (222)
..++..|+.+|+..|..++||+..++..||..+||++.+|++||+|||+|+|+.....++
T Consensus 9 ~~~t~~ql~~LE~~F~~~~yp~~~~r~~LA~~l~Lte~qVqvWFqNRRak~kr~~~~~~~ 68 (69)
T 2l9r_A 9 SHMSHTQVIELERKFSHQKYLSAPERAHLAKNLKLTETQVKIWFQNRRYKTKRKQLSSEL 68 (69)
T ss_dssp CCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHSCCSSSSCCC
T ss_pred CcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCChhheeecchhhhhhhhhhhhhhhc
Confidence 467899999999999999999999999999999999999999999999999998766554
No 110
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.70 E-value=1.5e-17 Score=107.08 Aligned_cols=59 Identities=25% Similarity=0.399 Sum_probs=55.8
Q ss_pred CCCCCCCcCCHHHHHHHHHhh---hhcCCCCHHHHHHHHHHcCCChhhHHHHHhhhhhhHHH
Q psy11996 133 ETKRQRTSYTRYQTLELEKEF---HFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKK 191 (222)
Q Consensus 133 ~~~~~r~~~~~~q~~~L~~~F---~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nrR~k~kk 191 (222)
..++.|+.|+.+|+.+|+.+| ..++||+..++..||..+||+..||++||+|+|+++|+
T Consensus 2 ~~rr~R~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk 63 (64)
T 1du6_A 2 SGHIEGRHMNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKK 63 (64)
T ss_dssp CCCCCCCSSTTTHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHTTTSSC
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHcccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhcc
Confidence 356788999999999999999 89999999999999999999999999999999999876
No 111
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=99.70 E-value=7.6e-17 Score=108.97 Aligned_cols=68 Identities=16% Similarity=0.171 Sum_probs=61.1
Q ss_pred CCCCCCCCcCCHHHHHHHHHhhhh---cCCCCHHHHHHHHHHcCCChhhHHHHHhhhhhhHHHhhhcccCC
Q psy11996 132 GETKRQRTSYTRYQTLELEKEFHF---NRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEHKMASMN 199 (222)
Q Consensus 132 ~~~~~~r~~~~~~q~~~L~~~F~~---~~~p~~~~~~~la~~l~l~~~~V~~WF~nrR~k~kk~~~~~~~~ 199 (222)
...++.|+.|+.+|+.+|+.+|.. ++||+..++..||..+||+..||++||+|+|+|+++........
T Consensus 5 ~~~rk~R~~~s~~q~~~L~~~f~~~~~~pYPs~~~r~~LA~~~gLs~~qV~~WFqNrR~r~k~~~~~~~~~ 75 (83)
T 2dmn_A 5 SSGKKRKGNLPAESVKILRDWMYKHRFKAYPSEEEKQMLSEKTNLSLLQISNWFINARRRILPDMLQQRRN 75 (83)
T ss_dssp CCCCCCCSSCCHHHHHHHHHHHHHTTTTCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTHHHHTCCCCC
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHhhHHhhhhHhhhcHHHHHhccC
Confidence 456778999999999999999987 69999999999999999999999999999999999876655444
No 112
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=99.69 E-value=3.7e-17 Score=103.84 Aligned_cols=55 Identities=31% Similarity=0.351 Sum_probs=52.8
Q ss_pred CCcCCHHHHHHHHHhhhh---cCCCCHHHHHHHHHHcCCChhhHHHHHhhhhhhHHHh
Q psy11996 138 RTSYTRYQTLELEKEFHF---NRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKE 192 (222)
Q Consensus 138 r~~~~~~q~~~L~~~F~~---~~~p~~~~~~~la~~l~l~~~~V~~WF~nrR~k~kk~ 192 (222)
++.|+.+|+.+|+..|.. ++||+..++..||..+||++.||++||+|+|+++|+.
T Consensus 2 r~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~gl~~~qV~~WFqNrR~r~kk~ 59 (60)
T 1k61_A 2 GHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKTI 59 (60)
T ss_dssp CCSCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC
T ss_pred cCcCCHHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHcccccC
Confidence 678999999999999999 9999999999999999999999999999999999873
No 113
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.69 E-value=1.3e-16 Score=109.25 Aligned_cols=65 Identities=20% Similarity=0.185 Sum_probs=58.2
Q ss_pred CCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHcCCChhhHHHHHhhhhhhHHHhhhcccCCCCC
Q psy11996 138 RTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEHKMASMNVIP 202 (222)
Q Consensus 138 r~~~~~~q~~~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nrR~k~kk~~~~~~~~~~~ 202 (222)
+..+|.+|+.+|+..|..++||+..++..||..+||++.+|++||+|||+|+++..+........
T Consensus 17 ~k~~t~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~vWFqNRR~k~r~~~~~~~~~~~~ 81 (89)
T 2dmp_A 17 FKEKTQGQVKILEDSFLKSSFPTQAELDRLRVETKLSRREIDSWFSERRKLRDSMEQAVLDSMGS 81 (89)
T ss_dssp CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTSCSCCCCCCCC
T ss_pred cccCCHHHHHHHHHHHccCCCCCHHHHHHHHHHhCCCHHhccHhhHhHHHHHHHHhHhhhccccC
Confidence 34489999999999999999999999999999999999999999999999999987776544443
No 114
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=99.69 E-value=3.4e-17 Score=103.95 Aligned_cols=52 Identities=19% Similarity=0.362 Sum_probs=49.8
Q ss_pred CCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHhhcchhHHHHH
Q psy11996 17 YTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKE 68 (222)
Q Consensus 17 ~t~~q~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WF~nrR~k~~~~ 68 (222)
-|.+|+.+|+..|..++||+..++++||..+||++.+|++||+|||+++++.
T Consensus 11 ~~~~Ql~~LE~~F~~~~YPs~~er~eLA~~tgLt~~qVkvWFqNRR~k~Kkg 62 (66)
T 3nau_A 11 KTKEQIAHLKASFLQSQFPDDAEVYRLIEVTGLARSEIKKWFSDHRYRCQRG 62 (66)
T ss_dssp CCHHHHHHHHHHHHGGGSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCcCHHHhhHhcccchhhhhcc
Confidence 4789999999999999999999999999999999999999999999999874
No 115
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P
Probab=99.68 E-value=6.7e-17 Score=110.40 Aligned_cols=62 Identities=27% Similarity=0.465 Sum_probs=57.7
Q ss_pred CCCCCcCCHHHHHHHHHhh---hhcCCCCHHHHHHHHHHcCCChhhHHHHHhhhhhhHHHhhhcc
Q psy11996 135 KRQRTSYTRYQTLELEKEF---HFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEHKMA 196 (222)
Q Consensus 135 ~~~r~~~~~~q~~~L~~~F---~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nrR~k~kk~~~~~ 196 (222)
++.|+.|+..|+.+|+.+| ..++||+..++..||..+||+..||++||+|+|+|+|+.....
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~h~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~~~ 66 (87)
T 1b72_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGKF 66 (87)
T ss_dssp -CCCCCCCHHHHHHHHHHHHTTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCGGGG
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhccccc
Confidence 5788999999999999999 8999999999999999999999999999999999999986543
No 116
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus}
Probab=99.68 E-value=1.5e-17 Score=126.42 Aligned_cols=65 Identities=28% Similarity=0.355 Sum_probs=52.2
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHhhcchhHHHHHhh
Q psy11996 6 ANGETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEHK 70 (222)
Q Consensus 6 ~~~~~~r~R~~~t~~q~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WF~nrR~k~~~~~~ 70 (222)
...+.||+|+.|+..|+.+|+..|..++||+..++..||..+||++.+|++||+|||+++|+..+
T Consensus 95 ~~~~~rr~Rt~ft~~Ql~~LE~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~~ 159 (164)
T 2xsd_C 95 AQGRKRKKRTSIEVGVKGALESHFLKCPKPSAHEITGLADSLQLEKEVVRVWFCNRRQKEKRMTP 159 (164)
T ss_dssp -----------CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTBSCC
T ss_pred ccccCCCCceeccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCCChhhhhhhhHHhhHHHhhccC
Confidence 35677889999999999999999999999999999999999999999999999999999998654
No 117
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.68 E-value=8.3e-17 Score=101.80 Aligned_cols=59 Identities=24% Similarity=0.210 Sum_probs=55.5
Q ss_pred CCCCCCCCcCCHHHHHHHHHhhhh-cCCCCHHHHHHHHHHcCCChhhHHHHHhhhhhhHH
Q psy11996 132 GETKRQRTSYTRYQTLELEKEFHF-NRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWK 190 (222)
Q Consensus 132 ~~~~~~r~~~~~~q~~~L~~~F~~-~~~p~~~~~~~la~~l~l~~~~V~~WF~nrR~k~k 190 (222)
...+|.|+.|+.+|+.+|+..|+. ++||+.+.++.||.++||++++|++||||+|.-.+
T Consensus 5 ~~~kR~RT~~s~eQL~~Lqs~f~~~~~yPd~~~r~~La~~tGL~~~~IqVWFQNrR~~~~ 64 (71)
T 1wi3_A 5 SSGPRSRTKISLEALGILQSFIHDVGLYPDQEAIHTLSAQLDLPKHTIIKFFQNQRYHVK 64 (71)
T ss_dssp CCCCCCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHCC
T ss_pred CCCCCCCccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHhhccceeeec
Confidence 367889999999999999999999 99999999999999999999999999999997654
No 118
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1
Probab=99.68 E-value=6.9e-17 Score=110.27 Aligned_cols=59 Identities=29% Similarity=0.339 Sum_probs=55.6
Q ss_pred CCCCCCCCCCCHHHHHHHHHHhhh---CCCCCHHHHHHHHHHhCCChHHHHHHhhcchhHHH
Q psy11996 8 GETKRQRTSYTRYQTLELEKEFHF---NRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWK 66 (222)
Q Consensus 8 ~~~~r~R~~~t~~q~~~L~~~f~~---~~~p~~~~~~~la~~~~l~~~~v~~WF~nrR~k~~ 66 (222)
..+++.|+.|+.+|+.+|+.+|.. ++||+..+++.||..+||++.+|++||+|||+++|
T Consensus 25 ~~~~k~r~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~gL~~~qV~~WFqNrR~r~k 86 (87)
T 1mnm_C 25 STKPYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEK 86 (87)
T ss_dssp ESSCCTTCCCCHHHHHHHHHHHHHTTSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhcc
Confidence 456777999999999999999999 99999999999999999999999999999999875
No 119
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=1.5e-16 Score=108.88 Aligned_cols=60 Identities=22% Similarity=0.245 Sum_probs=54.6
Q ss_pred CCCCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHhhcchhHHHHHhhhh
Q psy11996 13 QRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEHKMA 72 (222)
Q Consensus 13 ~R~~~t~~q~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WF~nrR~k~~~~~~~~ 72 (222)
++..||.+|+.+|+..|..++||+..+++.||..+||++.+|++||+|||+++++..+..
T Consensus 16 k~k~~t~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~vWFqNRR~k~r~~~~~~ 75 (89)
T 2dmp_A 16 KFKEKTQGQVKILEDSFLKSSFPTQAELDRLRVETKLSRREIDSWFSERRKLRDSMEQAV 75 (89)
T ss_dssp CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTSCSCC
T ss_pred ccccCCHHHHHHHHHHHccCCCCCHHHHHHHHHHhCCCHHhccHhhHhHHHHHHHHhHhh
Confidence 344599999999999999999999999999999999999999999999999988865443
No 120
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B*
Probab=99.67 E-value=4e-17 Score=110.44 Aligned_cols=59 Identities=27% Similarity=0.301 Sum_probs=54.0
Q ss_pred CCCCCCCCHHHHHHHHHHhhh---CCCCCHHHHHHHHHHhCCChHHHHHHhhcchhHHHHHh
Q psy11996 11 KRQRTSYTRYQTLELEKEFHF---NRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEH 69 (222)
Q Consensus 11 ~r~R~~~t~~q~~~L~~~f~~---~~~p~~~~~~~la~~~~l~~~~v~~WF~nrR~k~~~~~ 69 (222)
++.|++|+.+|+.+|+.+|.. ++||+..++..||..+||++.||++||+|||+++++..
T Consensus 3 ~krr~rft~~q~~~Le~~f~~h~~~~yP~~~~r~~La~~~gLt~~qV~~WFqNrR~r~kk~~ 64 (83)
T 1le8_B 3 PYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVAARRAKEKTIT 64 (83)
T ss_dssp --CCCCCCHHHHHHHHHHHHHTSSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTSC
T ss_pred CCCCCCCCHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHHHCCCHHHcccccHHHHccccccc
Confidence 455677999999999999999 99999999999999999999999999999999998853
No 121
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary, CPHD, POU domain, transcription factor, transcription/DNA complex; HET: DNA; 2.30A {Rattus norvegicus} SCOP: a.4.1.1 a.35.1.1
Probab=99.67 E-value=3.8e-17 Score=122.06 Aligned_cols=63 Identities=25% Similarity=0.425 Sum_probs=55.3
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHhhcchhHHHHH
Q psy11996 6 ANGETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKE 68 (222)
Q Consensus 6 ~~~~~~r~R~~~t~~q~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WF~nrR~k~~~~ 68 (222)
...++||.|+.||..|+.+|+..|..++||+..++..||..+||++.+|++||+|||+++++.
T Consensus 83 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~ 145 (146)
T 1au7_A 83 ANERKRKRRTTISIAAKDALERHFGEHSKPSSQEIMRMAEELNLEKEVVRVWFCNRRQREKRV 145 (146)
T ss_dssp ------CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHTTSC
T ss_pred CCCCCCCCCcCccHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCChhhchhhhHhhhhhhhcc
Confidence 445678899999999999999999999999999999999999999999999999999998863
No 122
>1lfb_A Liver transcription factor (LFB1); transcription regulation; 2.80A {Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A
Probab=99.67 E-value=2.8e-17 Score=114.30 Aligned_cols=65 Identities=20% Similarity=0.321 Sum_probs=53.4
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHH------------------hC---CChHHHHHHhhcchh
Q psy11996 5 NANGETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHA------------------LC---LTERQIKIWFQNRRM 63 (222)
Q Consensus 5 ~~~~~~~r~R~~~t~~q~~~L~~~f~~~~~p~~~~~~~la~~------------------~~---l~~~~v~~WF~nrR~ 63 (222)
...++.||.|+.|+.+|+.+||..|..++||+..++++||.. +| |++.+|++||+|||+
T Consensus 4 ~~~~k~rr~Rt~ft~~Ql~~LE~~F~~~~yP~~~~R~eLA~~~n~~~~~~~g~~~~~~~~lg~~~lse~qV~vWFqNRR~ 83 (99)
T 1lfb_A 4 DPTKKGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRK 83 (99)
T ss_dssp ---------CCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHTTTTCCTTCTTTTGGGCCCHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCcCcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhccccccccccccccccccCccccCcceeeeccHHHHH
Confidence 345678899999999999999999999999999999999999 88 999999999999999
Q ss_pred HHHHHh
Q psy11996 64 KWKKEH 69 (222)
Q Consensus 64 k~~~~~ 69 (222)
+.+++.
T Consensus 84 k~k~k~ 89 (99)
T 1lfb_A 84 EEAFRH 89 (99)
T ss_dssp TTSCCC
T ss_pred HHHHhc
Confidence 876644
No 123
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding domain, transcription, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.67 E-value=2.3e-17 Score=108.42 Aligned_cols=60 Identities=23% Similarity=0.339 Sum_probs=55.5
Q ss_pred CCCCCCCCCCHHHHHHHHHHh-hhCCCCCHHHHHHHHHHhCCChHHHHHHhhcchhHHHHH
Q psy11996 9 ETKRQRTSYTRYQTLELEKEF-HFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKE 68 (222)
Q Consensus 9 ~~~r~R~~~t~~q~~~L~~~f-~~~~~p~~~~~~~la~~~~l~~~~v~~WF~nrR~k~~~~ 68 (222)
-+.+.|..++.+|+.+||..| ..++||+..++++||..+||++.+|++||+|||+++++.
T Consensus 7 ~g~k~r~r~~~~ql~~LE~~F~~~~~yp~~~~r~~LA~~l~l~e~qVqvWFqNRR~k~r~~ 67 (72)
T 2cqx_A 7 GGIKDSPVNKVEPNDTLEKVFVSVTKYPDEKRLKGLSKQLDWSVRKIQCWFRHRRNQDKPS 67 (72)
T ss_dssp CCCCCCCCSCSCSTTHHHHHHHHTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHSSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChhhcchhhhhcccCCCCC
Confidence 355667889999999999999 999999999999999999999999999999999998863
No 124
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.67 E-value=4e-17 Score=106.01 Aligned_cols=56 Identities=43% Similarity=0.720 Sum_probs=52.8
Q ss_pred CCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHhhcchhHHHHHhh
Q psy11996 15 TSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEHK 70 (222)
Q Consensus 15 ~~~t~~q~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WF~nrR~k~~~~~~ 70 (222)
..+|..|+..||..|..++||+..++.+||..+||++.+|++||+|||+++++...
T Consensus 9 ~~~t~~ql~~LE~~F~~~~yp~~~~r~~LA~~l~Lte~qVqvWFqNRRak~kr~~~ 64 (69)
T 2l9r_A 9 SHMSHTQVIELERKFSHQKYLSAPERAHLAKNLKLTETQVKIWFQNRRYKTKRKQL 64 (69)
T ss_dssp CCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHSCCSSS
T ss_pred CcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCChhheeecchhhhhhhhhhhh
Confidence 46899999999999999999999999999999999999999999999999988654
No 125
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding domain, transcription, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.65 E-value=4.4e-17 Score=107.02 Aligned_cols=59 Identities=24% Similarity=0.347 Sum_probs=54.1
Q ss_pred CCCCCcCCHHHHHHHHHhh-hhcCCCCHHHHHHHHHHcCCChhhHHHHHhhhhhhHHHhh
Q psy11996 135 KRQRTSYTRYQTLELEKEF-HFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEH 193 (222)
Q Consensus 135 ~~~r~~~~~~q~~~L~~~F-~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nrR~k~kk~~ 193 (222)
.+.+..++.+|+.+||..| ..++||+..++.+||..+||++.+|++||||||+++|+..
T Consensus 9 ~k~r~r~~~~ql~~LE~~F~~~~~yp~~~~r~~LA~~l~l~e~qVqvWFqNRR~k~r~~~ 68 (72)
T 2cqx_A 9 IKDSPVNKVEPNDTLEKVFVSVTKYPDEKRLKGLSKQLDWSVRKIQCWFRHRRNQDKPSG 68 (72)
T ss_dssp CCCCCCSCSCSTTHHHHHHHHTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHSSCC
T ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChhhcchhhhhcccCCCCCC
Confidence 4456678889999999999 9999999999999999999999999999999999999753
No 126
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1
Probab=99.65 E-value=2.2e-16 Score=107.79 Aligned_cols=58 Identities=29% Similarity=0.343 Sum_probs=55.0
Q ss_pred CCCCCCCcCCHHHHHHHHHhhhh---cCCCCHHHHHHHHHHcCCChhhHHHHHhhhhhhHH
Q psy11996 133 ETKRQRTSYTRYQTLELEKEFHF---NRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWK 190 (222)
Q Consensus 133 ~~~~~r~~~~~~q~~~L~~~F~~---~~~p~~~~~~~la~~l~l~~~~V~~WF~nrR~k~k 190 (222)
..++.|+.|+.+|+.+|+.+|.. ++||+..++..||..+||+..||++||+|||+|+|
T Consensus 26 ~~~k~r~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~gL~~~qV~~WFqNrR~r~k 86 (87)
T 1mnm_C 26 TKPYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEK 86 (87)
T ss_dssp SSCCTTCCCCHHHHHHHHHHHHHTTSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhcc
Confidence 45667899999999999999999 99999999999999999999999999999999987
No 127
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens}
Probab=99.65 E-value=1.5e-16 Score=119.54 Aligned_cols=62 Identities=27% Similarity=0.441 Sum_probs=58.3
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHhhcchhHHHH
Q psy11996 6 ANGETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKK 67 (222)
Q Consensus 6 ~~~~~~r~R~~~t~~q~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WF~nrR~k~~~ 67 (222)
...++||+|+.|+.+|+.+|+..|..++||+..++..||..+||++.+|++||+|||+++|+
T Consensus 89 ~~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNrR~k~Kk 150 (151)
T 3d1n_I 89 EPSKKRKRRTSFTPQAIEALNAYFEKNPLPTGQEITEMAKELNYDREVVRVWFSNRRQTLKN 150 (151)
T ss_dssp SCCCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhHHHHHHHHhccCC
Confidence 34567889999999999999999999999999999999999999999999999999999875
No 128
>2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=1.8e-16 Score=101.60 Aligned_cols=54 Identities=15% Similarity=0.148 Sum_probs=50.3
Q ss_pred CCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHcCCChhhHHHHHhhhhhhHHH
Q psy11996 138 RTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKK 191 (222)
Q Consensus 138 r~~~~~~q~~~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nrR~k~kk 191 (222)
+..++.+|+.+|+..|..++||+..++..||..+||++.+|++||+|||+|.++
T Consensus 7 ~~~p~~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~e~qVqvWFqNRRak~~~ 60 (64)
T 2e19_A 7 GQPPLKNLLSLLKAYYALNAQPSAEELSKIADSVNLPLDVVKKWFEKMQAGQIS 60 (64)
T ss_dssp CCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCSC
T ss_pred CCCccHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcChhhcCcchhcccCCCCC
Confidence 345678999999999999999999999999999999999999999999998766
No 129
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A 1oct_C* 1pou_A 1pog_A 1hdp_A
Probab=99.65 E-value=1.1e-16 Score=121.36 Aligned_cols=61 Identities=33% Similarity=0.447 Sum_probs=54.5
Q ss_pred CCCCCCCCCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHhhcchhHHHHH
Q psy11996 8 GETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKE 68 (222)
Q Consensus 8 ~~~~r~R~~~t~~q~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WF~nrR~k~~~~ 68 (222)
.+.||.|+.|+..|+.+|+..|..++||+..++..||..+||++.+|++||+|||+++|+.
T Consensus 99 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~ 159 (160)
T 1e3o_C 99 SRRRKKRTSIETNIRVALEKSFMENQKPTSEDITLIAEQLNMEKEVIRVWFSNRRQKEKRI 159 (160)
T ss_dssp -----CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTSC
T ss_pred CCCCcCccccCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHCCChHHhhHhhHHhhhhhhcc
Confidence 4678899999999999999999999999999999999999999999999999999998873
No 130
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus}
Probab=99.65 E-value=1.1e-16 Score=121.77 Aligned_cols=67 Identities=27% Similarity=0.343 Sum_probs=53.0
Q ss_pred CCCCCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHcCCChhhHHHHHhhhhhhHHHhhhccc
Q psy11996 131 NGETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEHKMAS 197 (222)
Q Consensus 131 ~~~~~~~r~~~~~~q~~~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nrR~k~kk~~~~~~ 197 (222)
..+.++.|+.|+..|+.+|+..|..++||+..++..||..+||++.+|++||||||+|+|+..+..+
T Consensus 96 ~~~~rr~Rt~ft~~Ql~~LE~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~~~~~ 162 (164)
T 2xsd_C 96 QGRKRKKRTSIEVGVKGALESHFLKCPKPSAHEITGLADSLQLEKEVVRVWFCNRRQKEKRMTPAAG 162 (164)
T ss_dssp ----------CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTBSCC---
T ss_pred cccCCCCceeccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCCChhhhhhhhHHhhHHHhhccCCCC
Confidence 4466788999999999999999999999999999999999999999999999999999999876543
No 131
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B*
Probab=99.65 E-value=2.3e-16 Score=106.63 Aligned_cols=60 Identities=27% Similarity=0.284 Sum_probs=55.1
Q ss_pred CCCCcCCHHHHHHHHHhhhh---cCCCCHHHHHHHHHHcCCChhhHHHHHhhhhhhHHHhhhc
Q psy11996 136 RQRTSYTRYQTLELEKEFHF---NRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEHKM 195 (222)
Q Consensus 136 ~~r~~~~~~q~~~L~~~F~~---~~~p~~~~~~~la~~l~l~~~~V~~WF~nrR~k~kk~~~~ 195 (222)
+.++.|+.+|+.+|+.+|.. ++||+..++..||..+||+..||++||+|||+++|+....
T Consensus 4 krr~rft~~q~~~Le~~f~~h~~~~yP~~~~r~~La~~~gLt~~qV~~WFqNrR~r~kk~~~~ 66 (83)
T 1le8_B 4 YRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVAARRAKEKTITIA 66 (83)
T ss_dssp -CCCCCCHHHHHHHHHHHHHTSSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTSCCC
T ss_pred CCCCCCCHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHHHCCCHHHcccccHHHHccccccccC
Confidence 44667999999999999999 9999999999999999999999999999999999987543
No 132
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary, CPHD, POU domain, transcription factor, transcription/DNA complex; HET: DNA; 2.30A {Rattus norvegicus} SCOP: a.4.1.1 a.35.1.1
Probab=99.64 E-value=1.7e-16 Score=118.50 Aligned_cols=62 Identities=24% Similarity=0.419 Sum_probs=55.5
Q ss_pred CCCCCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHcCCChhhHHHHHhhhhhhHHHh
Q psy11996 131 NGETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKE 192 (222)
Q Consensus 131 ~~~~~~~r~~~~~~q~~~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nrR~k~kk~ 192 (222)
....++.|+.|+..|+.+|+..|..++||+..++..||..+||++.+|++||+|||+|+|+.
T Consensus 84 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~ 145 (146)
T 1au7_A 84 NERKRKRRTTISIAAKDALERHFGEHSKPSSQEIMRMAEELNLEKEVVRVWFCNRRQREKRV 145 (146)
T ss_dssp -----CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHTTSC
T ss_pred CCCCCCCCcCccHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCChhhchhhhHhhhhhhhcc
Confidence 34667889999999999999999999999999999999999999999999999999999874
No 133
>1lfb_A Liver transcription factor (LFB1); transcription regulation; 2.80A {Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A
Probab=99.64 E-value=1.5e-16 Score=110.61 Aligned_cols=66 Identities=23% Similarity=0.346 Sum_probs=54.3
Q ss_pred CCCCCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHH------------------cC---CChhhHHHHHhhhhhhH
Q psy11996 131 NGETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHA------------------LC---LTERQIKIWFQNRRMKW 189 (222)
Q Consensus 131 ~~~~~~~r~~~~~~q~~~L~~~F~~~~~p~~~~~~~la~~------------------l~---l~~~~V~~WF~nrR~k~ 189 (222)
..+.++.|+.|+..|+.+|+..|..++||+..++++||.. || |++.+|++||+|||++.
T Consensus 6 ~~k~rr~Rt~ft~~Ql~~LE~~F~~~~yP~~~~R~eLA~~~n~~~~~~~g~~~~~~~~lg~~~lse~qV~vWFqNRR~k~ 85 (99)
T 1lfb_A 6 TKKGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKEE 85 (99)
T ss_dssp -------CCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHTTTTCCTTCTTTTGGGCCCHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCcCcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhccccccccccccccccccCccccCcceeeeccHHHHHHH
Confidence 4466788999999999999999999999999999999999 88 99999999999999999
Q ss_pred HHhhhcc
Q psy11996 190 KKEHKMA 196 (222)
Q Consensus 190 kk~~~~~ 196 (222)
+++.+.+
T Consensus 86 k~k~~~~ 92 (99)
T 1lfb_A 86 AFRHKLA 92 (99)
T ss_dssp SCCC---
T ss_pred HHhchhh
Confidence 8776543
No 134
>2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=2.9e-16 Score=100.67 Aligned_cols=54 Identities=15% Similarity=0.148 Sum_probs=50.1
Q ss_pred CCCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHhhcchhHHHH
Q psy11996 14 RTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKK 67 (222)
Q Consensus 14 R~~~t~~q~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WF~nrR~k~~~ 67 (222)
+..++..|+..||..|..++||+..++.+||..+||++++|++||+|||+|.++
T Consensus 7 ~~~p~~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~e~qVqvWFqNRRak~~~ 60 (64)
T 2e19_A 7 GQPPLKNLLSLLKAYYALNAQPSAEELSKIADSVNLPLDVVKKWFEKMQAGQIS 60 (64)
T ss_dssp CCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCSC
T ss_pred CCCccHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcChhhcCcchhcccCCCCC
Confidence 356779999999999999999999999999999999999999999999998654
No 135
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A 1oct_C* 1pou_A 1pog_A 1hdp_A
Probab=99.63 E-value=2.5e-16 Score=119.47 Aligned_cols=61 Identities=33% Similarity=0.447 Sum_probs=54.8
Q ss_pred CCCCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHcCCChhhHHHHHhhhhhhHHHh
Q psy11996 132 GETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKE 192 (222)
Q Consensus 132 ~~~~~~r~~~~~~q~~~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nrR~k~kk~ 192 (222)
...++.|+.|+..|+.+|+..|..++||+..++..||..+||++.+|++||||||+|+||.
T Consensus 99 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~ 159 (160)
T 1e3o_C 99 SRRRKKRTSIETNIRVALEKSFMENQKPTSEDITLIAEQLNMEKEVIRVWFSNRRQKEKRI 159 (160)
T ss_dssp -----CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTSC
T ss_pred CCCCcCccccCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHCCChHHhhHhhHHhhhhhhcc
Confidence 3668889999999999999999999999999999999999999999999999999999985
No 136
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.63 E-value=2.1e-16 Score=100.51 Aligned_cols=50 Identities=26% Similarity=0.349 Sum_probs=46.5
Q ss_pred HHHHHHHHHhh-hhcCCCCHHHHHHHHHHcCCChhhHHHHHhhhhhhHHHh
Q psy11996 143 RYQTLELEKEF-HFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKE 192 (222)
Q Consensus 143 ~~q~~~L~~~F-~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nrR~k~kk~ 192 (222)
..|+.+||..| ..++||+..++.+||.+|||+++||++||||||+++|+.
T Consensus 9 ~~~~~~LE~~F~~~~~yp~~~~r~~LA~~l~LterQVkvWFqNRR~k~k~~ 59 (64)
T 1x2m_A 9 AQPNAILEKVFTAITKHPDEKRLEGLSKQLDWDVRSIQRWFRQRRNQEKPS 59 (64)
T ss_dssp SCHHHHHHHHHHTTCSSCCHHHHHHHHHHHCSCHHHHHHHHHHHHHHSCCS
T ss_pred chHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHHHHHHHHHHhccCCC
Confidence 45899999999 679999999999999999999999999999999999863
No 137
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens}
Probab=99.63 E-value=5.1e-16 Score=116.70 Aligned_cols=60 Identities=28% Similarity=0.461 Sum_probs=57.4
Q ss_pred CCCCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHcCCChhhHHHHHhhhhhhHHH
Q psy11996 132 GETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKK 191 (222)
Q Consensus 132 ~~~~~~r~~~~~~q~~~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nrR~k~kk 191 (222)
++.++.|+.|+..|+.+|+..|..++||+..++..||..+||++.+|++||+|||+|+||
T Consensus 91 ~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNrR~k~Kk 150 (151)
T 3d1n_I 91 SKKRKRRTSFTPQAIEALNAYFEKNPLPTGQEITEMAKELNYDREVVRVWFSNRRQTLKN 150 (151)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhHHHHHHHHhccCC
Confidence 466788999999999999999999999999999999999999999999999999999986
No 138
>3l1p_A POU domain, class 5, transcription factor 1; POU, transcription factor DNA complex, pore, stem cells; HET: DNA; 2.80A {Mus musculus} PDB: 1ocp_A
Probab=99.62 E-value=3.9e-16 Score=117.72 Aligned_cols=60 Identities=32% Similarity=0.424 Sum_probs=57.7
Q ss_pred CCCCCCCCCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHhhcchhHHHH
Q psy11996 8 GETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKK 67 (222)
Q Consensus 8 ~~~~r~R~~~t~~q~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WF~nrR~k~~~ 67 (222)
+++||+|+.|+..|+..|+..|..++||+..++..||..+||++.+|++||+|||+++|+
T Consensus 94 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yps~~~r~~LA~~l~L~~~qV~vWFqNRR~k~Kr 153 (155)
T 3l1p_A 94 QARKRKRTSIENRVRWSLETMFLKSPKPSLQQITHIANQLGLEKDVVRVWFSNRRQKGKR 153 (155)
T ss_dssp CCSCCCCCCCCHHHHHHHHTTTTTCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHC
T ss_pred cCCCCCCcccCHHHHHHHHHHHccCCCCCHHHHHHHHHHcCCChhheeeccccccccccC
Confidence 467889999999999999999999999999999999999999999999999999999887
No 139
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.61 E-value=3.3e-16 Score=99.61 Aligned_cols=49 Identities=27% Similarity=0.354 Sum_probs=46.0
Q ss_pred HHHHHHHHHHh-hhCCCCCHHHHHHHHHHhCCChHHHHHHhhcchhHHHH
Q psy11996 19 RYQTLELEKEF-HFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKK 67 (222)
Q Consensus 19 ~~q~~~L~~~f-~~~~~p~~~~~~~la~~~~l~~~~v~~WF~nrR~k~~~ 67 (222)
..|+.+||..| ..+.||+..++.+||..|||+++||++||||||+++|+
T Consensus 9 ~~~~~~LE~~F~~~~~yp~~~~r~~LA~~l~LterQVkvWFqNRR~k~k~ 58 (64)
T 1x2m_A 9 AQPNAILEKVFTAITKHPDEKRLEGLSKQLDWDVRSIQRWFRQRRNQEKP 58 (64)
T ss_dssp SCHHHHHHHHHHTTCSSCCHHHHHHHHHHHCSCHHHHHHHHHHHHHHSCC
T ss_pred chHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHHHHHHHHHHhccCC
Confidence 46899999999 67999999999999999999999999999999999876
No 140
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A
Probab=99.61 E-value=3.6e-16 Score=119.15 Aligned_cols=64 Identities=22% Similarity=0.271 Sum_probs=54.6
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHhhcchhHHHHHhh
Q psy11996 7 NGETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEHK 70 (222)
Q Consensus 7 ~~~~~r~R~~~t~~q~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WF~nrR~k~~~~~~ 70 (222)
..+.||.|+.||.+|+.+|+..|..++||+..+++.||..+||++.+|++||+|||++.++...
T Consensus 94 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~la~~l~L~~~qV~~WFqNrR~r~k~~~~ 157 (164)
T 2d5v_A 94 GNTPKKPRLVFTDVQRRTLHAIFKENKRPSKELQITISQQLGLELSTVSNFFMNARRRSLDKWL 157 (164)
T ss_dssp ------CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTSSCC--
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHhhhcChhhhccccccCC
Confidence 4467899999999999999999999999999999999999999999999999999999887543
No 141
>3l1p_A POU domain, class 5, transcription factor 1; POU, transcription factor DNA complex, pore, stem cells; HET: DNA; 2.80A {Mus musculus} PDB: 1ocp_A
Probab=99.60 E-value=1.4e-15 Score=114.76 Aligned_cols=61 Identities=31% Similarity=0.419 Sum_probs=57.4
Q ss_pred CCCCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHcCCChhhHHHHHhhhhhhHHHh
Q psy11996 132 GETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKE 192 (222)
Q Consensus 132 ~~~~~~r~~~~~~q~~~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nrR~k~kk~ 192 (222)
+..++.|+.|+..|+.+|+..|..++||+..++..||..+||++.+|++||+|||+|+|+.
T Consensus 94 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yps~~~r~~LA~~l~L~~~qV~vWFqNRR~k~Kr~ 154 (155)
T 3l1p_A 94 QARKRKRTSIENRVRWSLETMFLKSPKPSLQQITHIANQLGLEKDVVRVWFSNRRQKGKRS 154 (155)
T ss_dssp CCSCCCCCCCCHHHHHHHHTTTTTCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHC-
T ss_pred cCCCCCCcccCHHHHHHHHHHHccCCCCCHHHHHHHHHHcCCChhheeeccccccccccCC
Confidence 4567789999999999999999999999999999999999999999999999999999973
No 142
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1
Probab=99.58 E-value=2.4e-15 Score=97.38 Aligned_cols=56 Identities=18% Similarity=0.235 Sum_probs=50.4
Q ss_pred cCCHHHHHHHHHhhh---hcCCCCHHHHHHHHHHcCCChhhHHHHHhhhhhhHHHhhhc
Q psy11996 140 SYTRYQTLELEKEFH---FNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEHKM 195 (222)
Q Consensus 140 ~~~~~q~~~L~~~F~---~~~~p~~~~~~~la~~l~l~~~~V~~WF~nrR~k~kk~~~~ 195 (222)
.|+.+|+.+|+.+|. .++||+..++..||..+||+..||++||+|+|+|+++....
T Consensus 4 ~f~~~~~~~L~~~f~~h~~~pyp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~~ 62 (67)
T 3k2a_A 4 IFPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMID 62 (67)
T ss_dssp --CHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHSCC--
T ss_pred cCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCcCHHHhhhhhHHHHHHHhHHHHH
Confidence 689999999999999 99999999999999999999999999999999999986443
No 143
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A
Probab=99.56 E-value=2.2e-15 Score=114.85 Aligned_cols=66 Identities=21% Similarity=0.249 Sum_probs=54.9
Q ss_pred CCCCCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHcCCChhhHHHHHhhhhhhHHHhhhcc
Q psy11996 131 NGETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEHKMA 196 (222)
Q Consensus 131 ~~~~~~~r~~~~~~q~~~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nrR~k~kk~~~~~ 196 (222)
....++.|+.|+..|+.+|+..|..++||+..++..||..+||++.+|++||+|||+|+|+.....
T Consensus 94 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~la~~l~L~~~qV~~WFqNrR~r~k~~~~~~ 159 (164)
T 2d5v_A 94 GNTPKKPRLVFTDVQRRTLHAIFKENKRPSKELQITISQQLGLELSTVSNFFMNARRRSLDKWLEH 159 (164)
T ss_dssp ------CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTSSCC----
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHhhhcChhhhccccccCCCC
Confidence 345678899999999999999999999999999999999999999999999999999998865543
No 144
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1
Probab=99.56 E-value=4.5e-15 Score=96.06 Aligned_cols=54 Identities=19% Similarity=0.275 Sum_probs=50.0
Q ss_pred CCCHHHHHHHHHHhh---hCCCCCHHHHHHHHHHhCCChHHHHHHhhcchhHHHHHh
Q psy11996 16 SYTRYQTLELEKEFH---FNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEH 69 (222)
Q Consensus 16 ~~t~~q~~~L~~~f~---~~~~p~~~~~~~la~~~~l~~~~v~~WF~nrR~k~~~~~ 69 (222)
.|+.+|+.+|+.+|. .++||+..+++.||..+||++.||++||+|+|++.++..
T Consensus 4 ~f~~~~~~~L~~~f~~h~~~pyp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~ 60 (67)
T 3k2a_A 4 IFPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPM 60 (67)
T ss_dssp --CHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHSCC
T ss_pred cCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCcCHHHhhhhhHHHHHHHhHHH
Confidence 799999999999999 999999999999999999999999999999999988753
No 145
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.50 E-value=2.4e-14 Score=91.28 Aligned_cols=45 Identities=20% Similarity=0.362 Sum_probs=43.8
Q ss_pred HHHHHHHHHhhhhcCCCCHHHHHHHHHHcCCChhhHHHHHhhhhh
Q psy11996 143 RYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRM 187 (222)
Q Consensus 143 ~~q~~~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nrR~ 187 (222)
++|+.+|+.+|..+++|+.+++..||..+||+.++|++||+|||+
T Consensus 14 k~ql~~Lk~yF~~n~~Ps~eei~~LA~~lgL~~~VVrVWFqNrRa 58 (71)
T 2da7_A 14 KDHMSVLKAYYAMNMEPNSDELLKISIAVGLPQEFVKEWFEQRKV 58 (71)
T ss_dssp THHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHHHHHHhhccc
Confidence 579999999999999999999999999999999999999999997
No 146
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens}
Probab=99.49 E-value=9.8e-14 Score=93.64 Aligned_cols=63 Identities=16% Similarity=0.201 Sum_probs=56.0
Q ss_pred CCCCHHHHHHHHHHhhh---CCCCCHHHHHHHHHHhCCChHHHHHHhhcchhHHHHHhhhhccCCC
Q psy11996 15 TSYTRYQTLELEKEFHF---NRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEHKMASMNNP 77 (222)
Q Consensus 15 ~~~t~~q~~~L~~~f~~---~~~p~~~~~~~la~~~~l~~~~v~~WF~nrR~k~~~~~~~~~~~~~ 77 (222)
..|+.+++.+|+.+|.. ++||+..++.+||..+||++.||.+||+|+|.+.++........++
T Consensus 10 ~~l~~~~~~iL~~W~~~h~~npYPs~~ek~~LA~~tgLt~~QV~~WF~NrR~R~kk~~~~~~~~~p 75 (89)
T 2lk2_A 10 HMLPKESVQILRDWLYEHRYNAYPSEQEKALLSQQTHLSTLQVCNWFINARRRLLPDMLRKDGKDP 75 (89)
T ss_dssp CCCCHHHHHHHHHHHHHTSGGGSCCHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHHHHCSSC
T ss_pred ccCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhHHHHhcCCCc
Confidence 47999999999999987 9999999999999999999999999999999999987655544333
No 147
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens}
Probab=99.47 E-value=1.7e-13 Score=92.47 Aligned_cols=59 Identities=15% Similarity=0.175 Sum_probs=54.1
Q ss_pred CcCCHHHHHHHHHhhhh---cCCCCHHHHHHHHHHcCCChhhHHHHHhhhhhhHHHhhhccc
Q psy11996 139 TSYTRYQTLELEKEFHF---NRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEHKMAS 197 (222)
Q Consensus 139 ~~~~~~q~~~L~~~F~~---~~~p~~~~~~~la~~l~l~~~~V~~WF~nrR~k~kk~~~~~~ 197 (222)
..|+.+++.+|+.+|.. ++||+.+++.+||..+||+..||.+||+|+|.|.++......
T Consensus 10 ~~l~~~~~~iL~~W~~~h~~npYPs~~ek~~LA~~tgLt~~QV~~WF~NrR~R~kk~~~~~~ 71 (89)
T 2lk2_A 10 HMLPKESVQILRDWLYEHRYNAYPSEQEKALLSQQTHLSTLQVCNWFINARRRLLPDMLRKD 71 (89)
T ss_dssp CCCCHHHHHHHHHHHHHTSGGGSCCHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhHHHHhc
Confidence 56899999999999987 999999999999999999999999999999999998765443
No 148
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.47 E-value=6.7e-14 Score=89.20 Aligned_cols=46 Identities=20% Similarity=0.339 Sum_probs=44.1
Q ss_pred HHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHhhcchhH
Q psy11996 19 RYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMK 64 (222)
Q Consensus 19 ~~q~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WF~nrR~k 64 (222)
.+|+.+|+.+|..+++|+.+++..||..+||+.++|++||+|+|+.
T Consensus 14 k~ql~~Lk~yF~~n~~Ps~eei~~LA~~lgL~~~VVrVWFqNrRa~ 59 (71)
T 2da7_A 14 KDHMSVLKAYYAMNMEPNSDELLKISIAVGLPQEFVKEWFEQRKVY 59 (71)
T ss_dssp THHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHHHHHHhhcccc
Confidence 5789999999999999999999999999999999999999999973
No 149
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=99.45 E-value=1.7e-14 Score=111.93 Aligned_cols=59 Identities=19% Similarity=0.289 Sum_probs=53.4
Q ss_pred CCCCCCCCCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhC---------------------CChHHHHHHhhcchhHHH
Q psy11996 8 GETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALC---------------------LTERQIKIWFQNRRMKWK 66 (222)
Q Consensus 8 ~~~~r~R~~~t~~q~~~L~~~f~~~~~p~~~~~~~la~~~~---------------------l~~~~v~~WF~nrR~k~~ 66 (222)
++.||.|+.|+..|+.+|+..|..++||+..+|++||..+| |++.+|++||+|||++.+
T Consensus 113 ~k~rr~R~~ft~~ql~~Le~~F~~~~yp~~~~Re~la~~~~~~~~~~~G~~~~~~~glg~~~lte~~V~~WFqNRR~~~k 192 (194)
T 1ic8_A 113 KKGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKEEA 192 (194)
T ss_dssp ----CCCCCCCHHHHHHHHHHHHHHCCCCTTTTHHHHHHHHHHHHHHSSCCCTTCCTTGGGCCCHHHHHHHHHHHHHHCC
T ss_pred ccCCCCCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCchhhccccccccccccccccccCccccchhchhhhhhhh
Confidence 46789999999999999999999999999999999999999 999999999999998865
No 150
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}
Probab=99.41 E-value=2.1e-13 Score=106.90 Aligned_cols=58 Identities=21% Similarity=0.353 Sum_probs=52.9
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhC---------------------CChHHHHHHhhcchhH
Q psy11996 7 NGETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALC---------------------LTERQIKIWFQNRRMK 64 (222)
Q Consensus 7 ~~~~~r~R~~~t~~q~~~L~~~f~~~~~p~~~~~~~la~~~~---------------------l~~~~v~~WF~nrR~k 64 (222)
.++.||.|+.|++.|+.+|+..|..++||+..+|++||..+| |++.+|++||+|||+.
T Consensus 139 ~~k~RR~R~~ft~~ql~~Le~~F~~~~YP~~~~ReeLA~~~n~~~~~~rg~~~~~~~~L~~~~lte~~V~~WFqNRR~~ 217 (221)
T 2h8r_A 139 NKKMRRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKE 217 (221)
T ss_dssp ---CCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHTTCCSTTGGGGTTSCCCHHHHHHHHHHHHTT
T ss_pred cCCCCCCCcCCCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHChhhhcccccccchhccccccccCHHHHHHHhHHhhhh
Confidence 356788999999999999999999999999999999999987 8999999999999976
No 151
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=99.40 E-value=7.7e-14 Score=108.23 Aligned_cols=61 Identities=18% Similarity=0.265 Sum_probs=53.5
Q ss_pred CCCCCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHcC---------------------CChhhHHHHHhhhhhhH
Q psy11996 131 NGETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALC---------------------LTERQIKIWFQNRRMKW 189 (222)
Q Consensus 131 ~~~~~~~r~~~~~~q~~~L~~~F~~~~~p~~~~~~~la~~l~---------------------l~~~~V~~WF~nrR~k~ 189 (222)
..+.++.|+.|+..|+.+|+..|..++||+..++++||..++ |++.+|++||+|||++.
T Consensus 112 ~~k~rr~R~~ft~~ql~~Le~~F~~~~yp~~~~Re~la~~~~~~~~~~~G~~~~~~~glg~~~lte~~V~~WFqNRR~~~ 191 (194)
T 1ic8_A 112 TKKGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKEE 191 (194)
T ss_dssp -----CCCCCCCHHHHHHHHHHHHHHCCCCTTTTHHHHHHHHHHHHHHSSCCCTTCCTTGGGCCCHHHHHHHHHHHHHHC
T ss_pred cccCCCCCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCchhhccccccccccccccccccCccccchhchhhhhhh
Confidence 346688899999999999999999999999999999999999 99999999999999987
Q ss_pred HH
Q psy11996 190 KK 191 (222)
Q Consensus 190 kk 191 (222)
+.
T Consensus 192 k~ 193 (194)
T 1ic8_A 192 AF 193 (194)
T ss_dssp C-
T ss_pred hc
Confidence 64
No 152
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}
Probab=99.32 E-value=1.6e-12 Score=101.83 Aligned_cols=59 Identities=20% Similarity=0.323 Sum_probs=53.0
Q ss_pred CCCCCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHcC---------------------CChhhHHHHHhhhhhhH
Q psy11996 131 NGETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALC---------------------LTERQIKIWFQNRRMKW 189 (222)
Q Consensus 131 ~~~~~~~r~~~~~~q~~~L~~~F~~~~~p~~~~~~~la~~l~---------------------l~~~~V~~WF~nrR~k~ 189 (222)
..+.++.|+.|++.|+.+|+..|..++||+..++++||..+| |++.+|++||+|||+..
T Consensus 139 ~~k~RR~R~~ft~~ql~~Le~~F~~~~YP~~~~ReeLA~~~n~~~~~~rg~~~~~~~~L~~~~lte~~V~~WFqNRR~~~ 218 (221)
T 2h8r_A 139 NKKMRRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKEE 218 (221)
T ss_dssp ---CCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHTTCCSTTGGGGTTSCCCHHHHHHHHHHHHTTC
T ss_pred cCCCCCCCcCCCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHChhhhcccccccchhccccccccCHHHHHHHhHHhhhhh
Confidence 346788899999999999999999999999999999999987 89999999999999864
No 153
>1mh3_A Maltose binding-A1 homeodomain protein chimera; MATA1, binding cooperativity, maltose binding protein, MBP, sugar binding, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.4.1.1 c.94.1.1 PDB: 1mh4_A 1le8_A
Probab=99.15 E-value=1.9e-11 Score=105.59 Aligned_cols=55 Identities=25% Similarity=0.424 Sum_probs=51.8
Q ss_pred CCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHcCCChhhHHHHHhhhhhhHH
Q psy11996 136 RQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWK 190 (222)
Q Consensus 136 ~~r~~~~~~q~~~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nrR~k~k 190 (222)
+.++.++..|+..|+..|..++||+..++.+||.++||+++||++||+|||+|+|
T Consensus 367 ~~~~~~~~~q~~~Le~~f~~~~yp~~~~~~~la~~~~l~~~qv~~wf~n~r~~~~ 421 (421)
T 1mh3_A 367 AAAAAISPQARAFLEQVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 421 (421)
T ss_dssp HHHCSSCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHCCCC
T ss_pred hhhhhhcchHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhHhhhhcccccC
Confidence 4467799999999999999999999999999999999999999999999999875
No 154
>1mh3_A Maltose binding-A1 homeodomain protein chimera; MATA1, binding cooperativity, maltose binding protein, MBP, sugar binding, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.4.1.1 c.94.1.1 PDB: 1mh4_A 1le8_A
Probab=99.14 E-value=2e-11 Score=105.38 Aligned_cols=56 Identities=25% Similarity=0.417 Sum_probs=51.9
Q ss_pred CCCCCCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHhhcchhHHH
Q psy11996 11 KRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWK 66 (222)
Q Consensus 11 ~r~R~~~t~~q~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WF~nrR~k~~ 66 (222)
++.++.|+..|+..|+..|..++||+..+|++||..+||+++||++||+|||+|.|
T Consensus 366 ~~~~~~~~~~q~~~Le~~f~~~~yp~~~~~~~la~~~~l~~~qv~~wf~n~r~~~~ 421 (421)
T 1mh3_A 366 TAAAAAISPQARAFLEQVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 421 (421)
T ss_dssp HHHHCSSCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHCCCC
T ss_pred hhhhhhhcchHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhHhhhhcccccC
Confidence 34567899999999999999999999999999999999999999999999998753
No 155
>2nzz_A Penetratin conjugated GAS (374-394) peptide; conformational analysis, G protein, GAS subunit, A2A adenosine receptor, cell-penetrating peptides; NMR {Synthetic} PDB: 2o00_A
Probab=98.50 E-value=8.5e-09 Score=57.55 Aligned_cols=25 Identities=64% Similarity=1.080 Sum_probs=20.9
Q ss_pred hhHHHHHhhhhhhHHHhhhcccCCC
Q psy11996 176 RQIKIWFQNRRMKWKKEHKMASMNV 200 (222)
Q Consensus 176 ~~V~~WF~nrR~k~kk~~~~~~~~~ 200 (222)
+||++||||||+|+|+.........
T Consensus 1 rQVkIWFQNRRaK~Kk~~~~~~~~~ 25 (37)
T 2nzz_A 1 RQIKIWFQNRRMKWKKRVFNDARDI 25 (37)
T ss_dssp CCTTTTTTCSHHHHTSSHHHHTTTS
T ss_pred CCceeccHHHHHHHHHHhHHHHHHH
Confidence 4899999999999999988755443
No 156
>2nzz_A Penetratin conjugated GAS (374-394) peptide; conformational analysis, G protein, GAS subunit, A2A adenosine receptor, cell-penetrating peptides; NMR {Synthetic} PDB: 2o00_A
Probab=98.36 E-value=4.1e-08 Score=54.78 Aligned_cols=21 Identities=76% Similarity=1.211 Sum_probs=18.1
Q ss_pred HHHHHHhhcchhHHHHHhhhh
Q psy11996 52 RQIKIWFQNRRMKWKKEHKMA 72 (222)
Q Consensus 52 ~~v~~WF~nrR~k~~~~~~~~ 72 (222)
+||++||||||+|+++.....
T Consensus 1 rQVkIWFQNRRaK~Kk~~~~~ 21 (37)
T 2nzz_A 1 RQIKIWFQNRRMKWKKRVFND 21 (37)
T ss_dssp CCTTTTTTCSHHHHTSSHHHH
T ss_pred CCceeccHHHHHHHHHHhHHH
Confidence 479999999999999987654
No 157
>2ys9_A Homeobox and leucine zipper protein homez; homeodomain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.82 E-value=0.0015 Score=41.26 Aligned_cols=39 Identities=21% Similarity=0.342 Sum_probs=36.8
Q ss_pred HHHHHHhhhhcCCCCHHHHHHHHHHcCCChhhHHHHHhh
Q psy11996 146 TLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQN 184 (222)
Q Consensus 146 ~~~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WF~n 184 (222)
..+|+.+|...+.+..+..+.|..+.+|+..||+-||..
T Consensus 18 ~e~L~~Yy~~hk~L~EeDl~~L~~kskms~qqvkdwFa~ 56 (70)
T 2ys9_A 18 IQPLERYWAAHQQLRETDIPQLSQASRLSTQQVLDWFDS 56 (70)
T ss_dssp CHHHHHHHHHTCCCCTTHHHHHHHHTTCCHHHHHHHHHH
T ss_pred chHHHHHHHHhcccchhhHHHHHHHhCCCHHHHHHHHHh
Confidence 578999999999999999999999999999999999964
No 158
>2ys9_A Homeobox and leucine zipper protein homez; homeodomain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.73 E-value=0.0018 Score=40.90 Aligned_cols=41 Identities=20% Similarity=0.307 Sum_probs=37.5
Q ss_pred HHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHhhc
Q psy11996 20 YQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQN 60 (222)
Q Consensus 20 ~q~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WF~n 60 (222)
.-...|+.+|.....+...+.+.|+.+.+|+..||+.||-.
T Consensus 16 ~~~e~L~~Yy~~hk~L~EeDl~~L~~kskms~qqvkdwFa~ 56 (70)
T 2ys9_A 16 PDIQPLERYWAAHQQLRETDIPQLSQASRLSTQQVLDWFDS 56 (70)
T ss_dssp CCCHHHHHHHHHTCCCCTTHHHHHHHHTTCCHHHHHHHHHH
T ss_pred CcchHHHHHHHHhcccchhhHHHHHHHhCCCHHHHHHHHHh
Confidence 34578999999999999999999999999999999999953
No 159
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=91.06 E-value=2.9 Score=29.22 Aligned_cols=40 Identities=10% Similarity=0.223 Sum_probs=31.3
Q ss_pred CCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHhh
Q psy11996 15 TSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQ 59 (222)
Q Consensus 15 ~~~t~~q~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WF~ 59 (222)
..++.++...+...+.... ...++|..+|++...|..|+.
T Consensus 5 ~~~s~~~r~~i~~~~~~G~-----s~~~ia~~lgis~~Tv~r~~~ 44 (141)
T 1u78_A 5 SALSDTERAQLDVMKLLNV-----SLHEMSRKISRSRHCIRVYLK 44 (141)
T ss_dssp CCCCHHHHHHHHHHHHTTC-----CHHHHHHHHTCCHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHcCC-----CHHHHHHHHCcCHHHHHHHHH
Confidence 4688888877777775442 256779999999999999985
No 160
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=90.08 E-value=4.1 Score=29.40 Aligned_cols=41 Identities=10% Similarity=0.071 Sum_probs=31.2
Q ss_pred CCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHhhc
Q psy11996 15 TSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQN 60 (222)
Q Consensus 15 ~~~t~~q~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WF~n 60 (222)
..++.++...+...+.... ...++|..+|++...|..|+..
T Consensus 24 ~~~s~e~r~~ii~l~~~G~-----s~~~IA~~lgis~~TV~rwl~r 64 (159)
T 2k27_A 24 RPLPEVVRQRIVDLAHQGV-----RPCDISRQLRVSHGCVSKILGR 64 (159)
T ss_dssp CSSCHHHHHHHHHHHHHTC-----CHHHHHHHHTCCSHHHHHHHCC
T ss_pred CCCCHHHHHHHHHHHHcCC-----CHHHHHHHHCcCHHHHHHHHHH
Confidence 4688888777777775442 2456799999999999999853
No 161
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=87.82 E-value=4.8 Score=27.29 Aligned_cols=40 Identities=8% Similarity=0.003 Sum_probs=30.1
Q ss_pred CCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHhh
Q psy11996 15 TSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQ 59 (222)
Q Consensus 15 ~~~t~~q~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WF~ 59 (222)
..++.++...+...+... + + ..++|..+|++...|..|+.
T Consensus 16 ~~~s~~~r~~i~~~~~~g-~-s---~~~ia~~lgis~~Tv~~w~~ 55 (128)
T 1pdn_C 16 RPLPNNIRLKIVEMAADG-I-R---PCVISRQLRVSHGCVSKILN 55 (128)
T ss_dssp SCCCHHHHHHHHHHHHTT-C-C---HHHHHHHHTCCHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHHcC-C-C---HHHHHHHHCcCHHHHHHHHH
Confidence 358888777776666533 2 2 45689999999999999985
No 162
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=85.87 E-value=1.2 Score=26.54 Aligned_cols=46 Identities=20% Similarity=0.317 Sum_probs=32.4
Q ss_pred CCCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHhhc
Q psy11996 14 RTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQN 60 (222)
Q Consensus 14 R~~~t~~q~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WF~n 60 (222)
|..|+.+....+...+.... .......++|..+|++...|..|...
T Consensus 3 r~~ys~efK~~~~~~~~~g~-s~~~~~~~vA~~~gIs~~tl~~W~~~ 48 (59)
T 2glo_A 3 RRIFTPHFKLQVLESYRNDN-DCKGNQRATARKYNIHRRQIQKWLQC 48 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHCT-TTTTCHHHHHHHTTSCHHHHHHHHTT
T ss_pred CCcCCHHHHHHHHHHHHcCC-CcchHHHHHHHHHCcCHHHHHHHHHH
Confidence 45799987766655555432 21112568899999999999999753
No 163
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=85.54 E-value=2.4 Score=27.45 Aligned_cols=45 Identities=18% Similarity=0.285 Sum_probs=33.1
Q ss_pred CCCCCCCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHhh
Q psy11996 10 TKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQ 59 (222)
Q Consensus 10 ~~r~R~~~t~~q~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WF~ 59 (222)
+++.+..|+.++...+...+... . ...++|..+|++...|..|..
T Consensus 16 ~~~~~~~ys~e~k~~~v~~~~~g-~----s~~~iA~~~gIs~sTl~rW~k 60 (87)
T 2elh_A 16 GKRPLRSLTPRDKIHAIQRIHDG-E----SKASVARDIGVPESTLRGWCK 60 (87)
T ss_dssp CSSCCSSCCHHHHHHHHHHHHHT-C----CHHHHHHHHTCCHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHCC-C----CHHHHHHHHCcCHHHHHHHHH
Confidence 34567789999866555566433 2 256789999999999999974
No 164
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=84.68 E-value=1.6 Score=25.99 Aligned_cols=46 Identities=20% Similarity=0.304 Sum_probs=31.6
Q ss_pred CCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHcCCChhhHHHHHhh
Q psy11996 138 RTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQN 184 (222)
Q Consensus 138 r~~~~~~q~~~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WF~n 184 (222)
+..|+.++...+...+... .........+|.++||+...|..|...
T Consensus 3 r~~ys~efK~~~~~~~~~g-~s~~~~~~~vA~~~gIs~~tl~~W~~~ 48 (59)
T 2glo_A 3 RRIFTPHFKLQVLESYRND-NDCKGNQRATARKYNIHRRQIQKWLQC 48 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHC-TTTTTCHHHHHHHTTSCHHHHHHHHTT
T ss_pred CCcCCHHHHHHHHHHHHcC-CCcchHHHHHHHHHCcCHHHHHHHHHH
Confidence 4578888776665444433 221223668899999999999999753
No 165
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=84.04 E-value=9.2 Score=27.04 Aligned_cols=40 Identities=10% Similarity=0.077 Sum_probs=30.5
Q ss_pred CCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHhh
Q psy11996 15 TSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQ 59 (222)
Q Consensus 15 ~~~t~~q~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WF~ 59 (222)
..++.++...+...+... . ...++|..+|++...|..|..
T Consensus 31 ~~~s~e~r~~iv~~~~~G-~----s~~~iA~~lgis~~TV~rw~~ 70 (149)
T 1k78_A 31 RPLPDVVRQRIVELAHQG-V----RPCDISRQLRVSHGCVSKILG 70 (149)
T ss_dssp SCCCHHHHHHHHHHHHTT-C----CHHHHHHHHTCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHcC-C----CHHHHHHHHCcCHHHHHHHHH
Confidence 468888777777777533 2 245689999999999999985
No 166
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=79.27 E-value=13 Score=25.56 Aligned_cols=50 Identities=20% Similarity=0.212 Sum_probs=38.0
Q ss_pred CCCCCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHhhcchhH
Q psy11996 12 RQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMK 64 (222)
Q Consensus 12 r~R~~~t~~q~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WF~nrR~k 64 (222)
++|..||.++...+-..+..+.... ..++|..+|++...|..|..++...
T Consensus 3 ~~r~~~t~e~K~~iv~~~~~~g~~~---~~~~A~~~gvs~stl~~~~~~~~~~ 52 (131)
T 1hlv_A 3 PKRRQLTFREKSRIIQEVEENPDLR---KGEIARRFNIPPSTLSTILKNKRAI 52 (131)
T ss_dssp CSSCCCCHHHHHHHHHHHHHCTTSC---HHHHHHHHTCCHHHHHHHHHTHHHH
T ss_pred CcceeCCHHHHHHHHHHHHHCCCCc---HHHHHHHhCCCHHHHHHHHhchhhh
Confidence 3578999999888877775555443 3367899999999999998665543
No 167
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=77.66 E-value=5 Score=26.08 Aligned_cols=50 Identities=10% Similarity=0.108 Sum_probs=38.3
Q ss_pred cCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHcCCChhhHHHHHhhhhhhHHHhhh
Q psy11996 140 SYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEHK 194 (222)
Q Consensus 140 ~~~~~q~~~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nrR~k~kk~~~ 194 (222)
.++..+..+|...|.... ...+||..+|++...|+.+...-+.+.++...
T Consensus 37 ~L~~~~r~vl~l~~~~g~-----s~~eIA~~lgis~~tV~~~l~ra~~~Lr~~l~ 86 (92)
T 3hug_A 37 QLSAEHRAVIQRSYYRGW-----STAQIATDLGIAEGTVKSRLHYAVRALRLTLQ 86 (92)
T ss_dssp TSCHHHHHHHHHHHTSCC-----CHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcCC-----CHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHH
Confidence 477888888887654332 46778999999999999999877777766543
No 168
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=76.98 E-value=1.7 Score=24.42 Aligned_cols=42 Identities=7% Similarity=0.152 Sum_probs=28.2
Q ss_pred cCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHcCCChhhHHHHHhhhh
Q psy11996 140 SYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRR 186 (222)
Q Consensus 140 ~~~~~q~~~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nrR 186 (222)
.++.++...+...+... ....+||..+|++..-|..|+....
T Consensus 5 ~~~~~~~~~i~~l~~~g-----~s~~~ia~~lgvs~~Tv~r~l~~~~ 46 (52)
T 1jko_C 5 AINKHEQEQISRLLEKG-----HPRQQLAIIFGIGVSTLYRYFPASS 46 (52)
T ss_dssp SSCTTHHHHHHHHHHTT-----CCHHHHHHTTSCCHHHHHHHSCTTC
T ss_pred CCCHHHHHHHHHHHHcC-----CCHHHHHHHHCCCHHHHHHHHHHcc
Confidence 34555555555555433 2356789999999999999996443
No 169
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=75.74 E-value=5 Score=24.18 Aligned_cols=48 Identities=13% Similarity=-0.059 Sum_probs=36.5
Q ss_pred cCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHcCCChhhHHHHHhhhhhhHHHh
Q psy11996 140 SYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKE 192 (222)
Q Consensus 140 ~~~~~q~~~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nrR~k~kk~ 192 (222)
.+++.+..+|...|... ....++|..+|++...|+.+...-+.+.++.
T Consensus 15 ~L~~~~r~il~l~~~~g-----~s~~eIA~~lgis~~tv~~~~~ra~~~l~~~ 62 (70)
T 2o8x_A 15 DLTTDQREALLLTQLLG-----LSYADAAAVCGCPVGTIRSRVARARDALLAD 62 (70)
T ss_dssp SSCHHHHHHHHHHHTSC-----CCHHHHHHHHTSCHHHHHHHHHHHHHHHHC-
T ss_pred hCCHHHHHHHHHHHHcC-----CCHHHHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence 47888999998876433 2356789999999999999998766666554
No 170
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=75.41 E-value=6.7 Score=21.40 Aligned_cols=40 Identities=10% Similarity=0.236 Sum_probs=28.4
Q ss_pred cCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHcCCChhhHHHHHhh
Q psy11996 140 SYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQN 184 (222)
Q Consensus 140 ~~~~~q~~~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WF~n 184 (222)
.++.++...+...+... . ...++|..+|++..-|..|...
T Consensus 5 ~l~~~~~~~i~~~~~~g-~----s~~~IA~~lgis~~Tv~~~~~~ 44 (51)
T 1tc3_C 5 ALSDTERAQLDVMKLLN-V----SLHEMSRKISRSRHCIRVYLKD 44 (51)
T ss_dssp CCCHHHHHHHHHHHHTT-C----CHHHHHHHHTCCHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHcC-C----CHHHHHHHHCcCHHHHHHHHhh
Confidence 56777765555555433 1 3567899999999999999853
No 171
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=75.26 E-value=8.1 Score=26.64 Aligned_cols=49 Identities=20% Similarity=0.223 Sum_probs=37.5
Q ss_pred CCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHcCCChhhHHHHHhhhhhh
Q psy11996 137 QRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMK 188 (222)
Q Consensus 137 ~r~~~~~~q~~~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nrR~k 188 (222)
.|..+|.++...+...+..+..... ..+|..+|++...|..|..++...
T Consensus 4 ~r~~~t~e~K~~iv~~~~~~g~~~~---~~~A~~~gvs~stl~~~~~~~~~~ 52 (131)
T 1hlv_A 4 KRRQLTFREKSRIIQEVEENPDLRK---GEIARRFNIPPSTLSTILKNKRAI 52 (131)
T ss_dssp SSCCCCHHHHHHHHHHHHHCTTSCH---HHHHHHHTCCHHHHHHHHHTHHHH
T ss_pred cceeCCHHHHHHHHHHHHHCCCCcH---HHHHHHhCCCHHHHHHHHhchhhh
Confidence 5678999998877777755554443 357899999999999999876653
No 172
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=74.67 E-value=2.4 Score=23.75 Aligned_cols=42 Identities=7% Similarity=0.132 Sum_probs=29.8
Q ss_pred CCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHhhcch
Q psy11996 16 SYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRR 62 (222)
Q Consensus 16 ~~t~~q~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WF~nrR 62 (222)
.++.++...+...+... . ...++|..+|++...|..|+....
T Consensus 5 ~~~~~~~~~i~~l~~~g--~---s~~~ia~~lgvs~~Tv~r~l~~~~ 46 (52)
T 1jko_C 5 AINKHEQEQISRLLEKG--H---PRQQLAIIFGIGVSTLYRYFPASS 46 (52)
T ss_dssp SSCTTHHHHHHHHHHTT--C---CHHHHHHTTSCCHHHHHHHSCTTC
T ss_pred CCCHHHHHHHHHHHHcC--C---CHHHHHHHHCCCHHHHHHHHHHcc
Confidence 45666666666666543 2 356789999999999999986543
No 173
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=74.47 E-value=14 Score=23.62 Aligned_cols=45 Identities=20% Similarity=0.344 Sum_probs=32.1
Q ss_pred CCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHcCCChhhHHHHHhh
Q psy11996 135 KRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQN 184 (222)
Q Consensus 135 ~~~r~~~~~~q~~~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WF~n 184 (222)
++.+..++.++.......+... ....++|..+|++...|..|...
T Consensus 17 ~~~~~~ys~e~k~~~v~~~~~g-----~s~~~iA~~~gIs~sTl~rW~k~ 61 (87)
T 2elh_A 17 KRPLRSLTPRDKIHAIQRIHDG-----ESKASVARDIGVPESTLRGWCKN 61 (87)
T ss_dssp SSCCSSCCHHHHHHHHHHHHHT-----CCHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHCC-----CCHHHHHHHHCcCHHHHHHHHHH
Confidence 4456788998865555555432 13567899999999999999853
No 174
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=72.36 E-value=11 Score=24.26 Aligned_cols=50 Identities=10% Similarity=0.108 Sum_probs=36.4
Q ss_pred CCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHhhcchhHHHHHhh
Q psy11996 16 SYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEHK 70 (222)
Q Consensus 16 ~~t~~q~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WF~nrR~k~~~~~~ 70 (222)
.+++.+..+|.-.|-..- ...++|..+|++...|+.+...-|.+.++...
T Consensus 37 ~L~~~~r~vl~l~~~~g~-----s~~eIA~~lgis~~tV~~~l~ra~~~Lr~~l~ 86 (92)
T 3hug_A 37 QLSAEHRAVIQRSYYRGW-----STAQIATDLGIAEGTVKSRLHYAVRALRLTLQ 86 (92)
T ss_dssp TSCHHHHHHHHHHHTSCC-----CHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcCC-----CHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHH
Confidence 356777777766553332 36778999999999999998877777776544
No 175
>2lfw_A PHYR sigma-like domain; signal transduction, response regulator, sigma factor mimicr sigma factor, general stress response, signaling protein; NMR {Sphingomonas SP}
Probab=72.18 E-value=4.5 Score=29.10 Aligned_cols=64 Identities=9% Similarity=-0.013 Sum_probs=44.2
Q ss_pred CcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHcCCChhhHHHHHhhhhhhHHHhhhcccCCCCCCCCCC
Q psy11996 139 TSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEHKMASMNVIPYHYHM 207 (222)
Q Consensus 139 ~~~~~~q~~~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nrR~k~kk~~~~~~~~~~~~~~~~ 207 (222)
..+++.+..+|.-.|-.. ....++|..+|++...|+.....-|.+.++.-.........+..|+
T Consensus 92 ~~Lp~~~r~vl~L~~~~g-----~s~~EIA~~lgis~~tV~~~l~rar~~Lr~~l~~~~~~~~~~~~~~ 155 (157)
T 2lfw_A 92 ARMTPLSRQALLLTAMEG-----FSPEDAAYLIEVDTSEVETLVTEALAEIEKQTRALELVPRGSHHHH 155 (157)
T ss_dssp TTSCTTHHHHHTTTSSSC-----CCHHHHHHTTTSCHHHHHHHHHHHHHHHHTTSSCCCCCCCCCCCSS
T ss_pred HhCCHHHHHHHHHHHHcC-----CCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCcC
Confidence 456777888876554332 2467789999999999999998777777776554444444444443
No 176
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=69.89 E-value=11 Score=24.64 Aligned_cols=42 Identities=14% Similarity=0.201 Sum_probs=30.0
Q ss_pred CCCCCHHHHHHHHHHhhhC-CCCCHHHHHHHHHHhCCChHHHHHHhh
Q psy11996 14 RTSYTRYQTLELEKEFHFN-RYLTRRRRIEIAHALCLTERQIKIWFQ 59 (222)
Q Consensus 14 R~~~t~~q~~~L~~~f~~~-~~p~~~~~~~la~~~~l~~~~v~~WF~ 59 (222)
|..||.++....-..+... .. ....+|..+|++...|..|..
T Consensus 3 r~~ys~e~k~~~v~~~~~~~g~----s~~~ia~~~gIs~~tl~rW~~ 45 (97)
T 2jn6_A 3 TKTYSEEFKRDAVALYENSDGA----SLQQIANDLGINRVTLKNWII 45 (97)
T ss_dssp CCCCCHHHHHHHHHHHTTGGGS----CHHHHHHHHTSCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCC----hHHHHHHHHCcCHHHHHHHHH
Confidence 4578888776555555322 22 266889999999999999974
No 177
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=69.58 E-value=11 Score=20.37 Aligned_cols=40 Identities=10% Similarity=0.228 Sum_probs=29.4
Q ss_pred CCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHhhc
Q psy11996 16 SYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQN 60 (222)
Q Consensus 16 ~~t~~q~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WF~n 60 (222)
.++.++...+...+.... ...++|..+|++...|..|...
T Consensus 5 ~l~~~~~~~i~~~~~~g~-----s~~~IA~~lgis~~Tv~~~~~~ 44 (51)
T 1tc3_C 5 ALSDTERAQLDVMKLLNV-----SLHEMSRKISRSRHCIRVYLKD 44 (51)
T ss_dssp CCCHHHHHHHHHHHHTTC-----CHHHHHHHHTCCHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHcCC-----CHHHHHHHHCcCHHHHHHHHhh
Confidence 577877766666664432 2567899999999999999854
No 178
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=68.87 E-value=11 Score=22.67 Aligned_cols=52 Identities=13% Similarity=0.085 Sum_probs=36.9
Q ss_pred cCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHcCCChhhHHHHHhhhhhhHHHh
Q psy11996 140 SYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKE 192 (222)
Q Consensus 140 ~~~~~q~~~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nrR~k~kk~ 192 (222)
.+++.+..+|...|....+- .....++|..+|++...|+.+...-+.+.+..
T Consensus 5 ~L~~~er~il~l~~~l~~~~-g~s~~eIA~~lgis~~tV~~~~~ra~~kLr~~ 56 (68)
T 2p7v_B 5 GLTAREAKVLRMRFGIDMNT-DYTLEEVGKQFDVTRERIRQIEAKALRKLRHP 56 (68)
T ss_dssp CCCHHHHHHHHHHTTTTSSS-CCCHHHHHHHHTCCHHHHHHHHHHHHHGGGSC
T ss_pred cCCHHHHHHHHHHHccCCCC-CCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence 47888999998888321110 12356789999999999999987666665543
No 179
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=67.46 E-value=12 Score=22.92 Aligned_cols=51 Identities=12% Similarity=0.052 Sum_probs=36.7
Q ss_pred CcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHcCCChhhHHHHHhhhhhhHH
Q psy11996 139 TSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWK 190 (222)
Q Consensus 139 ~~~~~~q~~~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nrR~k~k 190 (222)
..+++.+..+|...|..... ......++|..+|++...|+.+...-+.+.+
T Consensus 9 ~~L~~~er~il~l~~~l~~~-~~~s~~eIA~~l~is~~tV~~~~~ra~~kLr 59 (73)
T 1ku3_A 9 SKLSEREAMVLKMRKGLIDG-REHTLEEVGAYFGVTRERIRQIENKALRKLK 59 (73)
T ss_dssp TTSCHHHHHHHHHHHTTTTS-SCCCHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHhcccC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 35788999999888752100 0123567899999999999999876666665
No 180
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=66.91 E-value=12 Score=23.67 Aligned_cols=46 Identities=22% Similarity=0.074 Sum_probs=35.2
Q ss_pred CcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHcCCChhhHHHHHhhhhhhHH
Q psy11996 139 TSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWK 190 (222)
Q Consensus 139 ~~~~~~q~~~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nrR~k~k 190 (222)
..+++.+..+|...+.. ....++|..+|++...|+.+..+-+.|.+
T Consensus 20 ~~Lt~~e~~vl~l~~~g------~s~~eIA~~l~is~~tV~~~l~r~~~kL~ 65 (82)
T 1je8_A 20 NQLTPRERDILKLIAQG------LPNKMIARRLDITESTVKVHVKHMLKKMK 65 (82)
T ss_dssp GGSCHHHHHHHHHHTTT------CCHHHHHHHHTSCHHHHHHHHHHHHHHTT
T ss_pred ccCCHHHHHHHHHHHcC------CCHHHHHHHHCcCHHHHHHHHHHHHHHHc
Confidence 46899999999885432 24677899999999999998876555544
No 181
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=66.64 E-value=11 Score=22.85 Aligned_cols=46 Identities=20% Similarity=0.195 Sum_probs=34.6
Q ss_pred CCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHcCCChhhHHHHHhhhhhhH
Q psy11996 138 RTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKW 189 (222)
Q Consensus 138 r~~~~~~q~~~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nrR~k~ 189 (222)
-..+++.+..+|...+... ...++|..+|++..-|..+...-+.+.
T Consensus 9 ~~~L~~~e~~il~~~~~g~------s~~eIA~~l~is~~tV~~~~~~~~~kl 54 (74)
T 1fse_A 9 KPLLTKREREVFELLVQDK------TTKEIASELFISEKTVRNHISNAMQKL 54 (74)
T ss_dssp CCCCCHHHHHHHHHHTTTC------CHHHHHHHHTSCHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHcCC------CHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 3568899999998853322 456789999999999999987655444
No 182
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=64.76 E-value=15 Score=23.92 Aligned_cols=49 Identities=18% Similarity=0.095 Sum_probs=37.0
Q ss_pred CcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHcCCChhhHHHHHhhhhhhHHHhh
Q psy11996 139 TSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEH 193 (222)
Q Consensus 139 ~~~~~~q~~~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nrR~k~kk~~ 193 (222)
..+++.+..+|...+... ...++|..+|++..-|+.+..+-+.|.+...
T Consensus 26 ~~Lt~~e~~vl~l~~~g~------s~~eIA~~l~is~~tV~~~l~r~~~kL~~~~ 74 (95)
T 3c57_A 26 SGLTDQERTLLGLLSEGL------TNKQIADRMFLAEKTVKNYVSRLLAKLGMER 74 (95)
T ss_dssp -CCCHHHHHHHHHHHTTC------CHHHHHHHHTCCHHHHHHHHHHHHHHHTCCC
T ss_pred hcCCHHHHHHHHHHHcCC------CHHHHHHHHCcCHHHHHHHHHHHHHHHcCCC
Confidence 468999999998864433 3477899999999999999886666655443
No 183
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=64.65 E-value=15 Score=23.82 Aligned_cols=42 Identities=14% Similarity=0.214 Sum_probs=29.7
Q ss_pred CCcCCHHHHHHHHHhhhhc-CCCCHHHHHHHHHHcCCChhhHHHHHh
Q psy11996 138 RTSYTRYQTLELEKEFHFN-RYLTRRRRIEIAHALCLTERQIKIWFQ 183 (222)
Q Consensus 138 r~~~~~~q~~~L~~~F~~~-~~p~~~~~~~la~~l~l~~~~V~~WF~ 183 (222)
+..++.++....-..+... . .....+|..+|++...|..|..
T Consensus 3 r~~ys~e~k~~~v~~~~~~~g----~s~~~ia~~~gIs~~tl~rW~~ 45 (97)
T 2jn6_A 3 TKTYSEEFKRDAVALYENSDG----ASLQQIANDLGINRVTLKNWII 45 (97)
T ss_dssp CCCCCHHHHHHHHHHHTTGGG----SCHHHHHHHHTSCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCC----ChHHHHHHHHCcCHHHHHHHHH
Confidence 3568888765555444322 2 2366889999999999999985
No 184
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=63.51 E-value=15 Score=24.98 Aligned_cols=48 Identities=13% Similarity=-0.002 Sum_probs=37.7
Q ss_pred cCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHcCCChhhHHHHHhhhhhhHHHh
Q psy11996 140 SYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKE 192 (222)
Q Consensus 140 ~~~~~q~~~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nrR~k~kk~ 192 (222)
.+++.+..++...|...- ...++|..+|++..-|+.|...-+.+.++.
T Consensus 22 ~L~~~~r~vl~l~y~~g~-----s~~EIA~~lgiS~~tV~~~l~ra~~kLr~~ 69 (113)
T 1s7o_A 22 LLTDKQMNYIELYYADDY-----SLAEIADEFGVSRQAVYDNIKRTEKILETY 69 (113)
T ss_dssp GSCHHHHHHHHHHHHTCC-----CHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcCC-----CHHHHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence 478888888888755442 457789999999999999998777766654
No 185
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=63.49 E-value=18 Score=24.01 Aligned_cols=45 Identities=18% Similarity=-0.030 Sum_probs=34.6
Q ss_pred CCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHcCCChhhHHHHHhhhhhh
Q psy11996 138 RTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMK 188 (222)
Q Consensus 138 r~~~~~~q~~~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nrR~k 188 (222)
...+++.+..+|...+... ...++|+.+|++..-|+.+..+-+.|
T Consensus 32 ~~~Lt~re~~Vl~l~~~G~------s~~EIA~~L~iS~~TV~~~l~ri~~K 76 (99)
T 1p4w_A 32 DKRLSPKESEVLRLFAEGF------LVTEIAKKLNRSIKTISSQKKSAMMK 76 (99)
T ss_dssp SSSCCHHHHHHHHHHHHTC------CHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHcCC------CHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 4568999999998765433 34788999999999999998754433
No 186
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=62.71 E-value=14 Score=22.82 Aligned_cols=46 Identities=17% Similarity=0.081 Sum_probs=33.6
Q ss_pred cCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHcCCChhhHHHHHhhhhhhHHH
Q psy11996 140 SYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKK 191 (222)
Q Consensus 140 ~~~~~q~~~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nrR~k~kk 191 (222)
.+++.+..+|...+... ...++|..+|++...|+.+...-+.+.+.
T Consensus 16 ~L~~~e~~vl~l~~~g~------s~~eIA~~l~is~~tV~~~~~r~~~kl~~ 61 (79)
T 1x3u_A 16 TLSERERQVLSAVVAGL------PNKSIAYDLDISPRTVEVHRANVMAKMKA 61 (79)
T ss_dssp HHCHHHHHHHHHHTTTC------CHHHHHHHTTSCHHHHHHHHHHHHHHTTC
T ss_pred hCCHHHHHHHHHHHcCC------CHHHHHHHHCcCHHHHHHHHHHHHHHHcC
Confidence 36788888887743322 34678999999999999998765555443
No 187
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=60.91 E-value=19 Score=21.40 Aligned_cols=47 Identities=13% Similarity=-0.079 Sum_probs=34.8
Q ss_pred CCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHhhcchhHHHH
Q psy11996 16 SYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKK 67 (222)
Q Consensus 16 ~~t~~q~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WF~nrR~k~~~ 67 (222)
.+++.+..+|.-.|...- ...++|..+|++...|..+...-+.+.++
T Consensus 15 ~L~~~~r~il~l~~~~g~-----s~~eIA~~lgis~~tv~~~~~ra~~~l~~ 61 (70)
T 2o8x_A 15 DLTTDQREALLLTQLLGL-----SYADAAAVCGCPVGTIRSRVARARDALLA 61 (70)
T ss_dssp SSCHHHHHHHHHHHTSCC-----CHHHHHHHHTSCHHHHHHHHHHHHHHHHC
T ss_pred hCCHHHHHHHHHHHHcCC-----CHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 477888888887654332 35678999999999999988665555544
No 188
>2lv7_A Calcium-binding protein 7; metal binding protein; NMR {Homo sapiens}
Probab=60.85 E-value=32 Score=22.50 Aligned_cols=46 Identities=13% Similarity=0.200 Sum_probs=37.5
Q ss_pred CCcCCHHHHHHHHHhhh-----hcCCCCHHHHHHHHHHcC--CChhhHHHHHh
Q psy11996 138 RTSYTRYQTLELEKEFH-----FNRYLTRRRRIEIAHALC--LTERQIKIWFQ 183 (222)
Q Consensus 138 r~~~~~~q~~~L~~~F~-----~~~~p~~~~~~~la~~l~--l~~~~V~~WF~ 183 (222)
...++.+++..|+..|. .+.+.+..+...+...+| ++..+|..+|+
T Consensus 27 ~~~l~~~~~~el~~~F~~~D~d~~G~I~~~El~~~l~~lg~~~~~~ei~~l~~ 79 (100)
T 2lv7_A 27 PVDIPEDELEEIREAFKVFDRDGNGFISKQELGTAMRSLGYMPNEVELEVIIQ 79 (100)
T ss_dssp CCCCCGGGHHHHHHHHHHTCSSCSSCBCHHHHHHHHHHHTCCCCTTTHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 45688999999999985 456889999998888877 57788888885
No 189
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=60.15 E-value=21 Score=24.93 Aligned_cols=48 Identities=19% Similarity=0.105 Sum_probs=35.9
Q ss_pred cCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHcCCChhhHHHHHhhhhhhHHHhh
Q psy11996 140 SYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEH 193 (222)
Q Consensus 140 ~~~~~q~~~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nrR~k~kk~~ 193 (222)
.+++.+..++. .|-.. ....++|..+|++...|+.+...-+.+.++.-
T Consensus 109 ~L~~~~r~v~~-~~~~g-----~s~~EIA~~lgis~~tV~~~~~ra~~~Lr~~l 156 (164)
T 3mzy_A 109 NFSKFEKEVLT-YLIRG-----YSYREIATILSKNLKSIDNTIQRIRKKSEEWI 156 (164)
T ss_dssp HSCHHHHHHHH-HHTTT-----CCHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHH-HHHcC-----CCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Confidence 57788888887 44322 24677899999999999999987776666554
No 190
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=59.96 E-value=21 Score=24.25 Aligned_cols=48 Identities=15% Similarity=-0.031 Sum_probs=37.0
Q ss_pred cCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHcCCChhhHHHHHhhhhhhHHHh
Q psy11996 140 SYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKE 192 (222)
Q Consensus 140 ~~~~~q~~~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nrR~k~kk~ 192 (222)
.+++.+..++...|...- ...++|..+|++..-|+.+...-|.+.++.
T Consensus 25 ~L~~~~r~vl~l~~~~g~-----s~~EIA~~lgiS~~tV~~~l~ra~~kLr~~ 72 (113)
T 1xsv_A 25 LLTNKQRNYLELFYLEDY-----SLSEIADTFNVSRQAVYDNIRRTGDLVEDY 72 (113)
T ss_dssp GSCHHHHHHHHHHHTSCC-----CHHHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcCC-----CHHHHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence 477888888887754432 457789999999999999998777776654
No 191
>1iuf_A Centromere ABP1 protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Schizosaccharomyces pombe} SCOP: a.4.1.7 a.4.1.7
Probab=59.67 E-value=11 Score=26.78 Aligned_cols=50 Identities=14% Similarity=0.181 Sum_probs=38.0
Q ss_pred CCCCCCCCHHHHHHHHHHh-hhCCCCCHHHHHHHHH-Hh--CCChHHHHHHhhc
Q psy11996 11 KRQRTSYTRYQTLELEKEF-HFNRYLTRRRRIEIAH-AL--CLTERQIKIWFQN 60 (222)
Q Consensus 11 ~r~R~~~t~~q~~~L~~~f-~~~~~p~~~~~~~la~-~~--~l~~~~v~~WF~n 60 (222)
+++|..+|.+|...|..++ ..++-..-.+...+|. .+ +++...|..|..+
T Consensus 6 ~~~R~~lT~~qK~~i~~~~~~~~~~~~q~~la~wa~~~f~~~is~stis~ilk~ 59 (144)
T 1iuf_A 6 KIKRRAITEHEKRALRHYFFQLQNRSGQQDLIEWFREKFGKDISQPSVSQILSS 59 (144)
T ss_dssp CCSSSCCCSHHHHHHHHHHHSSSSCCCHHHHHHHHHHHHSSCCSSSSTTHHHHH
T ss_pred CCcCccCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHCCCCcHHHHHHHHhh
Confidence 6788999999999999999 6777666555444332 56 7888889888754
No 192
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=58.50 E-value=15 Score=23.46 Aligned_cols=51 Identities=10% Similarity=0.099 Sum_probs=35.6
Q ss_pred cCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHcCCChhhHHHHHhhhhhhHHH
Q psy11996 140 SYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKK 191 (222)
Q Consensus 140 ~~~~~q~~~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nrR~k~kk 191 (222)
.+++.+..+|...|-...- ......++|..+|++...|+.+...-+.+.+.
T Consensus 18 ~L~~~er~vl~l~~~l~~~-~~~s~~EIA~~lgis~~tV~~~~~ra~~kLr~ 68 (87)
T 1tty_A 18 TLSPREAMVLRMRYGLLDG-KPKTLEEVGQYFNVTRERIRQIEVKALRKLRH 68 (87)
T ss_dssp TSCHHHHHHHHHHHTTTTS-SCCCHHHHHHHHTCCHHHHHHHHHHHHHHHBT
T ss_pred hCCHHHHHHHHHHHccCCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 4788889999888752100 01235677999999999999998765555544
No 193
>2lv7_A Calcium-binding protein 7; metal binding protein; NMR {Homo sapiens}
Probab=58.05 E-value=23 Score=23.23 Aligned_cols=47 Identities=13% Similarity=0.244 Sum_probs=36.8
Q ss_pred CCCCCCHHHHHHHHHHhhh-----CCCCCHHHHHHHHHHhC--CChHHHHHHhh
Q psy11996 13 QRTSYTRYQTLELEKEFHF-----NRYLTRRRRIEIAHALC--LTERQIKIWFQ 59 (222)
Q Consensus 13 ~R~~~t~~q~~~L~~~f~~-----~~~p~~~~~~~la~~~~--l~~~~v~~WF~ 59 (222)
....++.+++..|...|.. +-+.+..+...+...+| ++..+|..+|+
T Consensus 26 ~~~~l~~~~~~el~~~F~~~D~d~~G~I~~~El~~~l~~lg~~~~~~ei~~l~~ 79 (100)
T 2lv7_A 26 RPVDIPEDELEEIREAFKVFDRDGNGFISKQELGTAMRSLGYMPNEVELEVIIQ 79 (100)
T ss_dssp SCCCCCGGGHHHHHHHHHHTCSSCSSCBCHHHHHHHHHHHTCCCCTTTHHHHHH
T ss_pred ccccCCHHHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 3457899999999999843 45889999999888887 67778887774
No 194
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=56.48 E-value=28 Score=20.84 Aligned_cols=45 Identities=20% Similarity=0.205 Sum_probs=33.3
Q ss_pred CCCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHhhcchhH
Q psy11996 14 RTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMK 64 (222)
Q Consensus 14 R~~~t~~q~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WF~nrR~k 64 (222)
-..+++.+..+|.-++... ...++|..+|++...|..+...-+.+
T Consensus 9 ~~~L~~~e~~il~~~~~g~------s~~eIA~~l~is~~tV~~~~~~~~~k 53 (74)
T 1fse_A 9 KPLLTKREREVFELLVQDK------TTKEIASELFISEKTVRNHISNAMQK 53 (74)
T ss_dssp CCCCCHHHHHHHHHHTTTC------CHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHcCC------CHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 3568999999998753222 35678999999999999887654433
No 195
>2rn7_A IS629 ORFA; helix, all alpha, unknown function, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri}
Probab=55.90 E-value=23 Score=23.39 Aligned_cols=46 Identities=13% Similarity=0.239 Sum_probs=31.2
Q ss_pred CCCCCHHHHHHHHHHh-hhC-CCCCH-HHHHHHHHHhCCChHHHHHHhh
Q psy11996 14 RTSYTRYQTLELEKEF-HFN-RYLTR-RRRIEIAHALCLTERQIKIWFQ 59 (222)
Q Consensus 14 R~~~t~~q~~~L~~~f-~~~-~~p~~-~~~~~la~~~~l~~~~v~~WF~ 59 (222)
+..||.++....-..+ ... .+.+. .....+|..+|++...|..|..
T Consensus 4 ~~~ys~e~K~~~v~~~~~~~~~~~s~g~s~~~va~~~gIs~~tl~~W~~ 52 (108)
T 2rn7_A 4 NTRFSPEVRQRAVRMVLESQGEYDSQWATICSIAPKIGCTPETLRVWVR 52 (108)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhcccccccccccHHHHHHHHCcCHHHHHHHHH
Confidence 4578988775554444 322 12221 3567899999999999999964
No 196
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=55.56 E-value=26 Score=21.25 Aligned_cols=50 Identities=12% Similarity=0.043 Sum_probs=34.9
Q ss_pred CCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHhhcchhHHH
Q psy11996 16 SYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWK 66 (222)
Q Consensus 16 ~~t~~q~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WF~nrR~k~~ 66 (222)
.+++.+..+|.-.|..... ......++|..+|++...|..+...-+.+.+
T Consensus 10 ~L~~~er~il~l~~~l~~~-~~~s~~eIA~~l~is~~tV~~~~~ra~~kLr 59 (73)
T 1ku3_A 10 KLSEREAMVLKMRKGLIDG-REHTLEEVGAYFGVTRERIRQIENKALRKLK 59 (73)
T ss_dssp TSCHHHHHHHHHHHTTTTS-SCCCHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHhcccC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 4788899999888752100 0013567899999999999998765555554
No 197
>1fi6_A EH domain protein REPS1; EPS15 homology domain, EF hand, calcium, RAS signal transduction, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: a.39.1.6
Probab=54.66 E-value=22 Score=22.74 Aligned_cols=44 Identities=14% Similarity=0.087 Sum_probs=35.0
Q ss_pred CCCHHHHHHHHHHhhh-----CCCCCHHHHHHHHHHhCCChHHHHHHhh
Q psy11996 16 SYTRYQTLELEKEFHF-----NRYLTRRRRIEIAHALCLTERQIKIWFQ 59 (222)
Q Consensus 16 ~~t~~q~~~L~~~f~~-----~~~p~~~~~~~la~~~~l~~~~v~~WF~ 59 (222)
.++.++...+...|.. +-+.+..+...+...+|++...+...|.
T Consensus 2 ~ls~~~~~~~~~~F~~~D~d~dG~I~~~el~~~l~~~g~~~~~~~~i~~ 50 (92)
T 1fi6_A 2 KITDEQRQYYVNQFKTIQPDLNGFIPGSAAKEFFTKSKLPILELSHIWE 50 (92)
T ss_dssp CCCHHHHHHHHHHHTTTCCSTTCEEEHHHHHHHHHHHSSCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHcCCCHHHHHHHHH
Confidence 5788999999998854 3467888888888888999988887664
No 198
>3fmy_A HTH-type transcriptional regulator MQSA (YGIT/B3021); helix-turn-helix, DNA-binding, transcription regulation, DNA binding protein; HET: MEQ; 1.40A {Escherichia coli k-12}
Probab=53.06 E-value=26 Score=21.34 Aligned_cols=41 Identities=5% Similarity=0.036 Sum_probs=33.7
Q ss_pred CCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHhhcch
Q psy11996 15 TSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRR 62 (222)
Q Consensus 15 ~~~t~~q~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WF~nrR 62 (222)
..++.+.+..+......+ ..+||..+|++...|..|=..++
T Consensus 9 ~~~~g~~lr~~R~~~glt-------q~elA~~~gvs~~tis~~E~G~~ 49 (73)
T 3fmy_A 9 ETVAPEFIVKVRKKLSLT-------QKEASEIFGGGVNAFSRYEKGNA 49 (73)
T ss_dssp CCCCHHHHHHHHHHTTCC-------HHHHHHHHCSCTTHHHHHHTTSS
T ss_pred CCCCHHHHHHHHHHcCCC-------HHHHHHHhCcCHHHHHHHHcCCC
Confidence 468999999988776554 57899999999999999986654
No 199
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=53.06 E-value=26 Score=25.47 Aligned_cols=49 Identities=10% Similarity=-0.063 Sum_probs=36.8
Q ss_pred cCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHcCCChhhHHHHHhhhhhhHHHhh
Q psy11996 140 SYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEH 193 (222)
Q Consensus 140 ~~~~~q~~~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nrR~k~kk~~ 193 (222)
.+++.+..+|...|-.. ....++|..+|++...|+.+...-|.+.++.-
T Consensus 140 ~L~~~~r~vl~l~~~~g-----~s~~EIA~~lgis~~tV~~~l~ra~~~Lr~~l 188 (194)
T 1or7_A 140 SLPEDLRMAITLRELDG-----LSYEEIAAIMDCPVGTVRSRIFRAREAIDNKV 188 (194)
T ss_dssp HSCHHHHHHHHHHHTTC-----CCHHHHHHHTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHhHHHHHcC-----CCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Confidence 46777888887765433 23567899999999999999987777776643
No 200
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=52.84 E-value=25 Score=22.07 Aligned_cols=44 Identities=20% Similarity=0.055 Sum_probs=32.7
Q ss_pred CCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHhhcchhH
Q psy11996 15 TSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMK 64 (222)
Q Consensus 15 ~~~t~~q~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WF~nrR~k 64 (222)
..+++.+..+|.-++... ...++|..+|++...|+.+..+-+.+
T Consensus 20 ~~Lt~~e~~vl~l~~~g~------s~~eIA~~l~is~~tV~~~l~r~~~k 63 (82)
T 1je8_A 20 NQLTPRERDILKLIAQGL------PNKMIARRLDITESTVKVHVKHMLKK 63 (82)
T ss_dssp GGSCHHHHHHHHHHTTTC------CHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHcCC------CHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 468899999988754322 36778999999999999887644444
No 201
>2pmy_A RAS and EF-hand domain-containing protein; rasef, calcium-binding domain, structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=52.59 E-value=14 Score=23.38 Aligned_cols=45 Identities=16% Similarity=0.108 Sum_probs=36.1
Q ss_pred CCCCHHHHHHHHHHhhh-----CCCCCHHHHHHHHHHhCCChHHHHHHhh
Q psy11996 15 TSYTRYQTLELEKEFHF-----NRYLTRRRRIEIAHALCLTERQIKIWFQ 59 (222)
Q Consensus 15 ~~~t~~q~~~L~~~f~~-----~~~p~~~~~~~la~~~~l~~~~v~~WF~ 59 (222)
..++.+++..|...|.. +-+.+..+...+...+|++..+|..+|.
T Consensus 19 ~~l~~~~~~~l~~~F~~~D~d~~G~I~~~El~~~l~~~g~~~~~~~~~~~ 68 (91)
T 2pmy_A 19 ADGDGEELARLRSVFAACDANRSGRLEREEFRALCTELRVRPADAEAVFQ 68 (91)
T ss_dssp CHHHHHHHHHHHHHHHHHCTTCSSSEEHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHCCCCCCCCcHHHHHHHHHHcCcCHHHHHHHHH
Confidence 35778888888888843 4478888888888899999999888874
No 202
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=52.55 E-value=26 Score=23.18 Aligned_cols=43 Identities=14% Similarity=-0.089 Sum_probs=33.0
Q ss_pred CCCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHhhcch
Q psy11996 14 RTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRR 62 (222)
Q Consensus 14 R~~~t~~q~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WF~nrR 62 (222)
...+|+.+..+|.-.+..- ...++|..+|++...|+.+..+-+
T Consensus 32 ~~~Lt~re~~Vl~l~~~G~------s~~EIA~~L~iS~~TV~~~l~ri~ 74 (99)
T 1p4w_A 32 DKRLSPKESEVLRLFAEGF------LVTEIAKKLNRSIKTISSQKKSAM 74 (99)
T ss_dssp SSSCCHHHHHHHHHHHHTC------CHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHcCC------CHHHHHHHHCcCHHHHHHHHHHHH
Confidence 4579999999997765332 247889999999999998875433
No 203
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=52.07 E-value=38 Score=22.92 Aligned_cols=49 Identities=12% Similarity=0.001 Sum_probs=37.4
Q ss_pred CCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHhhcchhHHHHHh
Q psy11996 16 SYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEH 69 (222)
Q Consensus 16 ~~t~~q~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WF~nrR~k~~~~~ 69 (222)
.+++.+..++.-.|...- ...++|..+|++...|..|...-+.+.++..
T Consensus 22 ~L~~~~r~vl~l~y~~g~-----s~~EIA~~lgiS~~tV~~~l~ra~~kLr~~l 70 (113)
T 1s7o_A 22 LLTDKQMNYIELYYADDY-----SLAEIADEFGVSRQAVYDNIKRTEKILETYE 70 (113)
T ss_dssp GSCHHHHHHHHHHHHTCC-----CHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcCC-----CHHHHHHHHCcCHHHHHHHHHHHHHHHHHHH
Confidence 477888888877754442 3577899999999999999987777766543
No 204
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=51.57 E-value=33 Score=22.21 Aligned_cols=43 Identities=19% Similarity=0.088 Sum_probs=32.2
Q ss_pred CCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHhhcchhH
Q psy11996 16 SYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMK 64 (222)
Q Consensus 16 ~~t~~q~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WF~nrR~k 64 (222)
.+++.+..+|.-.+... ...++|..+|++...|+.+..+-+.+
T Consensus 27 ~Lt~~e~~vl~l~~~g~------s~~eIA~~l~is~~tV~~~l~r~~~k 69 (95)
T 3c57_A 27 GLTDQERTLLGLLSEGL------TNKQIADRMFLAEKTVKNYVSRLLAK 69 (95)
T ss_dssp CCCHHHHHHHHHHHTTC------CHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHcCC------CHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 58888998888764333 24778999999999999887544443
No 205
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=51.44 E-value=43 Score=23.24 Aligned_cols=48 Identities=21% Similarity=0.121 Sum_probs=33.5
Q ss_pred CCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHhhcchhHHHHHhh
Q psy11996 17 YTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEHK 70 (222)
Q Consensus 17 ~t~~q~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WF~nrR~k~~~~~~ 70 (222)
+++.+..+|. .|-.. ....++|..+|++...|+.+...-+.+.++...
T Consensus 110 L~~~~r~v~~-~~~~g-----~s~~EIA~~lgis~~tV~~~~~ra~~~Lr~~l~ 157 (164)
T 3mzy_A 110 FSKFEKEVLT-YLIRG-----YSYREIATILSKNLKSIDNTIQRIRKKSEEWIK 157 (164)
T ss_dssp SCHHHHHHHH-HHTTT-----CCHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHH-HHHcC-----CCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
Confidence 5566666666 33222 246778999999999999998776777666543
No 206
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=51.28 E-value=28 Score=26.08 Aligned_cols=49 Identities=10% Similarity=0.023 Sum_probs=38.3
Q ss_pred cCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHcCCChhhHHHHHhhhhhhHHHhh
Q psy11996 140 SYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEH 193 (222)
Q Consensus 140 ~~~~~q~~~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nrR~k~kk~~ 193 (222)
.+++.+..+|...|... ....++|..+|++...|+.+...-+.+.++..
T Consensus 187 ~L~~~~r~vl~l~~~~g-----~s~~EIA~~lgis~~~V~~~~~ra~~~Lr~~l 235 (239)
T 1rp3_A 187 KLPEREKLVIQLIFYEE-----LPAKEVAKILETSVSRVSQLKAKALERLREML 235 (239)
T ss_dssp TSCHHHHHHHHHHHTSC-----CCHHHHHHHTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHhcC-----CCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHH
Confidence 47888888888876433 24667899999999999999987777776643
No 207
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=51.20 E-value=21 Score=20.27 Aligned_cols=39 Identities=15% Similarity=0.158 Sum_probs=27.2
Q ss_pred cCC--HHHHHHHHHhhhhcCCCCHHHHHHHHHHcCCChhhHHHHHh
Q psy11996 140 SYT--RYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQ 183 (222)
Q Consensus 140 ~~~--~~q~~~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WF~ 183 (222)
.++ .++...+...+.... ...++|..+|++..-|..|..
T Consensus 13 ~l~~~~~~~~~i~~l~~~g~-----s~~eIA~~lgis~~TV~~~l~ 53 (55)
T 2x48_A 13 YVESEDDLVSVAHELAKMGY-----TVQQIANALGVSERKVRRYLE 53 (55)
T ss_dssp EECSHHHHHHHHHHHHHTTC-----CHHHHHHHHTSCHHHHHHHHT
T ss_pred HHhcCHHHHHHHHHHHHcCC-----CHHHHHHHHCcCHHHHHHHHH
Confidence 355 566555555554332 356789999999999999985
No 208
>2rn7_A IS629 ORFA; helix, all alpha, unknown function, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri}
Probab=50.64 E-value=33 Score=22.59 Aligned_cols=46 Identities=13% Similarity=0.217 Sum_probs=31.1
Q ss_pred CCcCCHHHHHHHHHhh-hhc-CCCC-HHHHHHHHHHcCCChhhHHHHHh
Q psy11996 138 RTSYTRYQTLELEKEF-HFN-RYLT-RRRRIEIAHALCLTERQIKIWFQ 183 (222)
Q Consensus 138 r~~~~~~q~~~L~~~F-~~~-~~p~-~~~~~~la~~l~l~~~~V~~WF~ 183 (222)
+..|+.++....-..+ ... .+.+ ......+|..+|++...|..|..
T Consensus 4 ~~~ys~e~K~~~v~~~~~~~~~~~s~g~s~~~va~~~gIs~~tl~~W~~ 52 (108)
T 2rn7_A 4 NTRFSPEVRQRAVRMVLESQGEYDSQWATICSIAPKIGCTPETLRVWVR 52 (108)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhcccccccccccHHHHHHHHCcCHHHHHHHHH
Confidence 3468888765544444 321 1222 24677899999999999999975
No 209
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=50.49 E-value=39 Score=21.77 Aligned_cols=44 Identities=25% Similarity=0.137 Sum_probs=33.1
Q ss_pred CCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHcCCChhhHHHHHhhhhh
Q psy11996 138 RTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRM 187 (222)
Q Consensus 138 r~~~~~~q~~~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nrR~ 187 (222)
...++..+..+|...+... ...+||..||++..-|+....+=..
T Consensus 27 ~~~Lt~rE~~Vl~l~~~G~------s~~eIA~~L~iS~~TV~~~~~~i~~ 70 (90)
T 3ulq_B 27 QDVLTPRECLILQEVEKGF------TNQEIADALHLSKRSIEYSLTSIFN 70 (90)
T ss_dssp --CCCHHHHHHHHHHHTTC------CHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred ccCCCHHHHHHHHHHHcCC------CHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4568999999998876332 3677899999999999988765433
No 210
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=50.38 E-value=15 Score=23.60 Aligned_cols=46 Identities=22% Similarity=0.019 Sum_probs=34.2
Q ss_pred CcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHcCCChhhHHHHHhhhhhhHH
Q psy11996 139 TSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWK 190 (222)
Q Consensus 139 ~~~~~~q~~~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nrR~k~k 190 (222)
..+++.+..+|...+... ...++|..+|++..-|+.+..+-+.|.+
T Consensus 28 ~~Lt~~e~~vl~l~~~g~------s~~eIA~~l~is~~tV~~~l~r~~~kL~ 73 (91)
T 2rnj_A 28 EMLTEREMEILLLIAKGY------SNQEIASASHITIKTVKTHVSNILSKLE 73 (91)
T ss_dssp GGCCSHHHHHHHHHHTTC------CTTHHHHHHTCCHHHHHHHHHHHHHHTT
T ss_pred hcCCHHHHHHHHHHHcCC------CHHHHHHHHCcCHHHHHHHHHHHHHHHC
Confidence 468888999998754332 2456799999999999999876555544
No 211
>2pmy_A RAS and EF-hand domain-containing protein; rasef, calcium-binding domain, structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=48.64 E-value=19 Score=22.75 Aligned_cols=45 Identities=16% Similarity=0.101 Sum_probs=37.5
Q ss_pred CcCCHHHHHHHHHhhh-----hcCCCCHHHHHHHHHHcCCChhhHHHHHh
Q psy11996 139 TSYTRYQTLELEKEFH-----FNRYLTRRRRIEIAHALCLTERQIKIWFQ 183 (222)
Q Consensus 139 ~~~~~~q~~~L~~~F~-----~~~~p~~~~~~~la~~l~l~~~~V~~WF~ 183 (222)
..++.++...|...|. .+.+.+..+...+...+|++..+|..+|.
T Consensus 19 ~~l~~~~~~~l~~~F~~~D~d~~G~I~~~El~~~l~~~g~~~~~~~~~~~ 68 (91)
T 2pmy_A 19 ADGDGEELARLRSVFAACDANRSGRLEREEFRALCTELRVRPADAEAVFQ 68 (91)
T ss_dssp CHHHHHHHHHHHHHHHHHCTTCSSSEEHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHCCCCCCCCcHHHHHHHHHHcCcCHHHHHHHHH
Confidence 4678889999999985 35578889999888899999999998885
No 212
>3i5g_B Myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_B 3i5h_B 3i5i_B
Probab=47.77 E-value=58 Score=22.84 Aligned_cols=39 Identities=15% Similarity=0.271 Sum_probs=31.1
Q ss_pred CCCCCCHHHHHHHHHHhhh-----CCCCCHHHHHHHHHHhCCCh
Q psy11996 13 QRTSYTRYQTLELEKEFHF-----NRYLTRRRRIEIAHALCLTE 51 (222)
Q Consensus 13 ~R~~~t~~q~~~L~~~f~~-----~~~p~~~~~~~la~~~~l~~ 51 (222)
+|..+|.+|+..|...|.. +-+.+..+...+...+|+..
T Consensus 6 ~~~~Lt~~qi~elk~~F~~~D~d~dG~I~~~El~~~l~~lg~~~ 49 (153)
T 3i5g_B 6 RRVKLSQRQMQELKEAFTMIDQDRDGFIGMEDLKDMFSSLGRVP 49 (153)
T ss_dssp -CTTCCHHHHHHHHHHHHHHCCSTTSCCCHHHHHHHHHHTTSCC
T ss_pred cccCCCHHHHHHHHHHHHHHCCCCCCeEcHHHHHHHHHHcCCCc
Confidence 3567999999999999843 45789999888888888554
No 213
>1c07_A Protein (epidermal growth factor receptor pathway substrate 15); calcium binding, signaling domain, NPF binding, FW binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6
Probab=47.29 E-value=24 Score=22.67 Aligned_cols=44 Identities=9% Similarity=0.062 Sum_probs=34.2
Q ss_pred CCCHHHHHHHHHHhhh-----CCCCCHHHHHHHHHHhCCChHHHHHHhh
Q psy11996 16 SYTRYQTLELEKEFHF-----NRYLTRRRRIEIAHALCLTERQIKIWFQ 59 (222)
Q Consensus 16 ~~t~~q~~~L~~~f~~-----~~~p~~~~~~~la~~~~l~~~~v~~WF~ 59 (222)
.++.++...|...|.. +-+.+..+...+...+|++...+..+|.
T Consensus 3 ~ls~~~~~~~~~~F~~~D~d~dG~I~~~el~~~l~~~g~~~~~~~~i~~ 51 (95)
T 1c07_A 3 VVSPAEKAKYDEIFLKTDKDMDGFVSGLEVREIFLKTGLPSTLLAHIWS 51 (95)
T ss_dssp SSCSHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHcCCCHHHHHHHHH
Confidence 3577888888888733 3467888888888888999998887764
No 214
>3fwb_A Cell division control protein 31; gene gating, complex, cell cycle, cell division, mitosis, MR transport, nuclear pore complex, nucleus, phosphoprotein; 2.50A {Saccharomyces cerevisiae} SCOP: a.39.1.5 PDB: 2gv5_A 2doq_A 3fwc_A
Probab=46.71 E-value=50 Score=22.60 Aligned_cols=49 Identities=18% Similarity=0.193 Sum_probs=36.8
Q ss_pred CCCCCCCCCHHHHHHHHHHhhh-----CCCCCHHHHHHHHHHhC--CChHHHHHHh
Q psy11996 10 TKRQRTSYTRYQTLELEKEFHF-----NRYLTRRRRIEIAHALC--LTERQIKIWF 58 (222)
Q Consensus 10 ~~r~R~~~t~~q~~~L~~~f~~-----~~~p~~~~~~~la~~~~--l~~~~v~~WF 58 (222)
.......++.+++..|...|.. +.+.+..+...+...+| ++...+...|
T Consensus 10 ~~~~~~~l~~~~~~~l~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~l~ 65 (161)
T 3fwb_A 10 SGPLNSELLEEQKQEIYEAFSLFDMNNDGFLDYHELKVAMKALGFELPKREILDLI 65 (161)
T ss_dssp TTTTTTTSCHHHHHHHHHHHHHHCTTSSSEECHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred cCCCCCCCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 4445678999999999999953 34678888888877776 5666666665
No 215
>2hin_A GP39, repressor protein; transcription factor, dimer interface, helix-turn-helix; 1.05A {Enterobacteria phage N15} PDB: 3qws_A
Probab=46.66 E-value=19 Score=22.44 Aligned_cols=29 Identities=14% Similarity=0.178 Sum_probs=22.7
Q ss_pred HHHHHHHhCCChHHHHHHhhcchhHHHHH
Q psy11996 40 RIEIAHALCLTERQIKIWFQNRRMKWKKE 68 (222)
Q Consensus 40 ~~~la~~~~l~~~~v~~WF~nrR~k~~~~ 68 (222)
..+||+.+|++..-|..|......-..+.
T Consensus 13 ~~~lA~~lGVs~~aVs~W~~g~~iP~~~~ 41 (71)
T 2hin_A 13 VEKAAVGVGVTPGAVYQWLQAGEIPPLRQ 41 (71)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHTSCCHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHhCCCCCHHHH
Confidence 67899999999999999986544444343
No 216
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A
Probab=46.24 E-value=16 Score=21.25 Aligned_cols=23 Identities=22% Similarity=0.197 Sum_probs=19.8
Q ss_pred HHHHHHHhCCChHHHHHHhhcch
Q psy11996 40 RIEIAHALCLTERQIKIWFQNRR 62 (222)
Q Consensus 40 ~~~la~~~~l~~~~v~~WF~nrR 62 (222)
..+||..+|++...|..|...++
T Consensus 17 ~~~lA~~~gis~~~i~~~e~g~~ 39 (66)
T 2xi8_A 17 QSELAALLEVSRQTINGIEKNKY 39 (66)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 56799999999999999987654
No 217
>1fi6_A EH domain protein REPS1; EPS15 homology domain, EF hand, calcium, RAS signal transduction, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: a.39.1.6
Probab=46.09 E-value=30 Score=21.98 Aligned_cols=43 Identities=14% Similarity=0.088 Sum_probs=32.1
Q ss_pred CCHHHHHHHHHhhhh-----cCCCCHHHHHHHHHHcCCChhhHHHHHh
Q psy11996 141 YTRYQTLELEKEFHF-----NRYLTRRRRIEIAHALCLTERQIKIWFQ 183 (222)
Q Consensus 141 ~~~~q~~~L~~~F~~-----~~~p~~~~~~~la~~l~l~~~~V~~WF~ 183 (222)
++.++...+...|.. +.+.+..+...+...+|++..++...|.
T Consensus 3 ls~~~~~~~~~~F~~~D~d~dG~I~~~el~~~l~~~g~~~~~~~~i~~ 50 (92)
T 1fi6_A 3 ITDEQRQYYVNQFKTIQPDLNGFIPGSAAKEFFTKSKLPILELSHIWE 50 (92)
T ss_dssp CCHHHHHHHHHHHTTTCCSTTCEEEHHHHHHHHHHHSSCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHcCCCHHHHHHHHH
Confidence 577888888888853 4457778887777778888877777764
No 218
>3bd1_A CRO protein; transcription factor, helix-turn-helix, prophage, structural evolution, transcription; 1.40A {Xylella fastidiosa}
Probab=44.76 E-value=16 Score=22.56 Aligned_cols=23 Identities=22% Similarity=0.330 Sum_probs=20.4
Q ss_pred HHHHHHHhCCChHHHHHHhhcch
Q psy11996 40 RIEIAHALCLTERQIKIWFQNRR 62 (222)
Q Consensus 40 ~~~la~~~~l~~~~v~~WF~nrR 62 (222)
..+||..+|++...|..|...++
T Consensus 14 q~~lA~~lgvs~~~is~~e~g~~ 36 (79)
T 3bd1_A 14 VSALAASLGVRQSAISNWRARGR 36 (79)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHTC
T ss_pred HHHHHHHHCCCHHHHHHHHHCCC
Confidence 57899999999999999997665
No 219
>1c07_A Protein (epidermal growth factor receptor pathway substrate 15); calcium binding, signaling domain, NPF binding, FW binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6
Probab=44.60 E-value=28 Score=22.33 Aligned_cols=43 Identities=9% Similarity=0.109 Sum_probs=33.3
Q ss_pred CCHHHHHHHHHhhh-----hcCCCCHHHHHHHHHHcCCChhhHHHHHh
Q psy11996 141 YTRYQTLELEKEFH-----FNRYLTRRRRIEIAHALCLTERQIKIWFQ 183 (222)
Q Consensus 141 ~~~~q~~~L~~~F~-----~~~~p~~~~~~~la~~l~l~~~~V~~WF~ 183 (222)
++.++...++..|. .+.+.+..+...+...+|++..+|..+|.
T Consensus 4 ls~~~~~~~~~~F~~~D~d~dG~I~~~el~~~l~~~g~~~~~~~~i~~ 51 (95)
T 1c07_A 4 VSPAEKAKYDEIFLKTDKDMDGFVSGLEVREIFLKTGLPSTLLAHIWS 51 (95)
T ss_dssp SCSHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHcCCCHHHHHHHHH
Confidence 46678888888884 34567888888888888999888888774
No 220
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=44.56 E-value=54 Score=22.05 Aligned_cols=49 Identities=14% Similarity=-0.027 Sum_probs=36.0
Q ss_pred CCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHhhcchhHHHHHh
Q psy11996 16 SYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEH 69 (222)
Q Consensus 16 ~~t~~q~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WF~nrR~k~~~~~ 69 (222)
.+++.+..+|.-.|...- ...++|..+|++...|..+...-|.+.+...
T Consensus 25 ~L~~~~r~vl~l~~~~g~-----s~~EIA~~lgiS~~tV~~~l~ra~~kLr~~l 73 (113)
T 1xsv_A 25 LLTNKQRNYLELFYLEDY-----SLSEIADTFNVSRQAVYDNIRRTGDLVEDYE 73 (113)
T ss_dssp GSCHHHHHHHHHHHTSCC-----CHHHHHHHTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcCC-----CHHHHHHHHCcCHHHHHHHHHHHHHHHHHHH
Confidence 367777777776654332 3577899999999999999877777766543
No 221
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L
Probab=44.53 E-value=17 Score=21.21 Aligned_cols=23 Identities=9% Similarity=0.303 Sum_probs=19.9
Q ss_pred HHHHHHHhCCChHHHHHHhhcch
Q psy11996 40 RIEIAHALCLTERQIKIWFQNRR 62 (222)
Q Consensus 40 ~~~la~~~~l~~~~v~~WF~nrR 62 (222)
..+||..+|++...|..|...++
T Consensus 21 ~~~lA~~~gis~~~i~~~e~g~~ 43 (68)
T 2r1j_L 21 QAALGKMVGVSNVAISQWERSET 43 (68)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSS
T ss_pred HHHHHHHHCCCHHHHHHHHcCCC
Confidence 56799999999999999987654
No 222
>1iuf_A Centromere ABP1 protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Schizosaccharomyces pombe} SCOP: a.4.1.7 a.4.1.7
Probab=44.36 E-value=29 Score=24.50 Aligned_cols=51 Identities=14% Similarity=0.194 Sum_probs=39.6
Q ss_pred CCCCCcCCHHHHHHHHHhh-hhcCCCCHHHHHHHH-HHc--CCChhhHHHHHhhh
Q psy11996 135 KRQRTSYTRYQTLELEKEF-HFNRYLTRRRRIEIA-HAL--CLTERQIKIWFQNR 185 (222)
Q Consensus 135 ~~~r~~~~~~q~~~L~~~F-~~~~~p~~~~~~~la-~~l--~l~~~~V~~WF~nr 185 (222)
++.|..+|.+|...|...+ +.++..+..+....| +++ +++...|..|..++
T Consensus 6 ~~~R~~lT~~qK~~i~~~~~~~~~~~~q~~la~wa~~~f~~~is~stis~ilk~k 60 (144)
T 1iuf_A 6 KIKRRAITEHEKRALRHYFFQLQNRSGQQDLIEWFREKFGKDISQPSVSQILSSK 60 (144)
T ss_dssp CCSSSCCCSHHHHHHHHHHHSSSSCCCHHHHHHHHHHHHSSCCSSSSTTHHHHHH
T ss_pred CCcCccCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHCCCCcHHHHHHHHhhH
Confidence 5678999999999999999 677777766665533 366 78888999998663
No 223
>3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA binding motif, transcriptional regulator, bacter antitoxin, Zn binding protein, transcription regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB: 3gn5_A* 3gn5_B* 2kz8_A
Probab=43.39 E-value=34 Score=23.47 Aligned_cols=40 Identities=5% Similarity=0.037 Sum_probs=28.7
Q ss_pred CCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHhhcch
Q psy11996 16 SYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRR 62 (222)
Q Consensus 16 ~~t~~q~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WF~nrR 62 (222)
.++++++..|......+ ..+||..+|++...|..|-..++
T Consensus 70 ~~~~~~l~~~R~~~gls-------q~~la~~~g~s~~~i~~~E~g~~ 109 (133)
T 3o9x_A 70 TVAPEFIVKVRKKLSLT-------QKEASEIFGGGVNAFSRYEKGNA 109 (133)
T ss_dssp TCCHHHHHHHHHHTTCC-------HHHHHHHHCSCTTHHHHHHHTSS
T ss_pred CCCHHHHHHHHHHcCCC-------HHHHHHHHCCCHHHHHHHHCCCC
Confidence 45666666666555444 46788999999999999987654
No 224
>1zug_A Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} SCOP: a.35.1.2 PDB: 2cro_A 3cro_L*
Probab=42.67 E-value=19 Score=21.28 Aligned_cols=23 Identities=13% Similarity=0.172 Sum_probs=19.9
Q ss_pred HHHHHHHhCCChHHHHHHhhcch
Q psy11996 40 RIEIAHALCLTERQIKIWFQNRR 62 (222)
Q Consensus 40 ~~~la~~~~l~~~~v~~WF~nrR 62 (222)
..+||..+|++...|..|...++
T Consensus 19 q~~lA~~~gis~~~i~~~e~g~~ 41 (71)
T 1zug_A 19 QTELATKAGVKQQSIQLIEAGVT 41 (71)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTCC
T ss_pred HHHHHHHhCCCHHHHHHHHcCCC
Confidence 56799999999999999987654
No 225
>2hin_A GP39, repressor protein; transcription factor, dimer interface, helix-turn-helix; 1.05A {Enterobacteria phage N15} PDB: 3qws_A
Probab=42.33 E-value=19 Score=22.41 Aligned_cols=28 Identities=14% Similarity=0.164 Sum_probs=22.3
Q ss_pred HHHHHHHcCCChhhHHHHHhhhhhhHHH
Q psy11996 164 RIEIAHALCLTERQIKIWFQNRRMKWKK 191 (222)
Q Consensus 164 ~~~la~~l~l~~~~V~~WF~nrR~k~kk 191 (222)
...||+.||++..-|..|..++..-..+
T Consensus 13 ~~~lA~~lGVs~~aVs~W~~g~~iP~~~ 40 (71)
T 2hin_A 13 VEKAAVGVGVTPGAVYQWLQAGEIPPLR 40 (71)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHTSCCHHH
T ss_pred HHHHHHHHCCCHHHHHHHHhCCCCCHHH
Confidence 6789999999999999998765444433
No 226
>3bs3_A Putative DNA-binding protein; XRE-family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.65A {Bacteroides fragilis}
Probab=41.44 E-value=21 Score=21.50 Aligned_cols=23 Identities=22% Similarity=0.359 Sum_probs=20.0
Q ss_pred HHHHHHHhCCChHHHHHHhhcch
Q psy11996 40 RIEIAHALCLTERQIKIWFQNRR 62 (222)
Q Consensus 40 ~~~la~~~~l~~~~v~~WF~nrR 62 (222)
..+||..+|++...|..|...++
T Consensus 26 ~~~lA~~~gis~~~i~~~e~g~~ 48 (76)
T 3bs3_A 26 NRWLAEQMGKSENTISRWCSNKS 48 (76)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTSS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 57799999999999999987654
No 227
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=41.42 E-value=44 Score=22.75 Aligned_cols=41 Identities=10% Similarity=0.235 Sum_probs=31.0
Q ss_pred CcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHcCCChhhHHHHHhh
Q psy11996 139 TSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQN 184 (222)
Q Consensus 139 ~~~~~~q~~~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WF~n 184 (222)
..++.++...+...+... ....++|..+|++...|..|+..
T Consensus 5 ~~~s~~~r~~i~~~~~~G-----~s~~~ia~~lgis~~Tv~r~~~~ 45 (141)
T 1u78_A 5 SALSDTERAQLDVMKLLN-----VSLHEMSRKISRSRHCIRVYLKD 45 (141)
T ss_dssp CCCCHHHHHHHHHHHHTT-----CCHHHHHHHHTCCHHHHHHHHHS
T ss_pred ccCCHHHHHHHHHHHHcC-----CCHHHHHHHHCcCHHHHHHHHHc
Confidence 467888777777666543 13567799999999999999964
No 228
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=40.92 E-value=63 Score=20.02 Aligned_cols=45 Identities=18% Similarity=0.043 Sum_probs=32.8
Q ss_pred CCCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHh
Q psy11996 14 RTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWF 58 (222)
Q Consensus 14 R~~~t~~q~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WF 58 (222)
...+|.++...|+......+--....-+.+|..+|=+..+|+.-|
T Consensus 8 ~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~lgRt~~eV~~~y 52 (72)
T 2cqq_A 8 APEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHELGRSVTDVTTKA 52 (72)
T ss_dssp CCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHHTSCHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHhCCCHHHHHHHH
Confidence 457999999999999877653222334557888898888888644
No 229
>3omt_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.65A {Cytophaga hutchinsonii}
Probab=40.78 E-value=22 Score=21.36 Aligned_cols=23 Identities=13% Similarity=0.283 Sum_probs=19.8
Q ss_pred HHHHHHHhCCChHHHHHHhhcch
Q psy11996 40 RIEIAHALCLTERQIKIWFQNRR 62 (222)
Q Consensus 40 ~~~la~~~~l~~~~v~~WF~nrR 62 (222)
..+||..+|++...|..|...++
T Consensus 24 q~~lA~~~gis~~~is~~e~g~~ 46 (73)
T 3omt_A 24 NLWLTETLDKNKTTVSKWCTNDV 46 (73)
T ss_dssp HHHHHHHTTCCHHHHHHHHTTSS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 56799999999999999987653
No 230
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=39.86 E-value=42 Score=21.22 Aligned_cols=50 Identities=10% Similarity=0.097 Sum_probs=33.5
Q ss_pred CCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHhhcchhHHH
Q psy11996 16 SYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWK 66 (222)
Q Consensus 16 ~~t~~q~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WF~nrR~k~~ 66 (222)
.+++.+..+|.-.|....- ......++|..+|++...|+.+...-+.+.+
T Consensus 18 ~L~~~er~vl~l~~~l~~~-~~~s~~EIA~~lgis~~tV~~~~~ra~~kLr 67 (87)
T 1tty_A 18 TLSPREAMVLRMRYGLLDG-KPKTLEEVGQYFNVTRERIRQIEVKALRKLR 67 (87)
T ss_dssp TSCHHHHHHHHHHHTTTTS-SCCCHHHHHHHHTCCHHHHHHHHHHHHHHHB
T ss_pred hCCHHHHHHHHHHHccCCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 4678888888887752100 0113567899999999999998755444433
No 231
>1adr_A P22 C2 repressor; transcription regulation; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=39.66 E-value=22 Score=21.29 Aligned_cols=24 Identities=8% Similarity=0.263 Sum_probs=20.3
Q ss_pred HHHHHHHhCCChHHHHHHhhcchh
Q psy11996 40 RIEIAHALCLTERQIKIWFQNRRM 63 (222)
Q Consensus 40 ~~~la~~~~l~~~~v~~WF~nrR~ 63 (222)
..+||..+|++...|..|...++.
T Consensus 21 ~~~lA~~~gis~~~i~~~e~g~~~ 44 (76)
T 1adr_A 21 QAALGKMVGVSNVAISQWERSETE 44 (76)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSSC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCCC
Confidence 567999999999999999876543
No 232
>2q24_A Putative TETR family transcriptional regulator; structural genomics, PSI, protein structure initiative; 1.80A {Streptomyces coelicolor A3}
Probab=39.53 E-value=16 Score=26.47 Aligned_cols=41 Identities=12% Similarity=0.016 Sum_probs=33.0
Q ss_pred HHHHHHHhhhhcCCCCHHHHHHHHHHcCCChhhHHHHHhhhhh
Q psy11996 145 QTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRM 187 (222)
Q Consensus 145 q~~~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nrR~ 187 (222)
=+..-...|....| . .....||...|++..-|...|.++-.
T Consensus 20 Il~aA~~lf~~~G~-~-~s~~~IA~~agvs~~tlY~~F~sK~~ 60 (194)
T 2q24_A 20 ILAAAVRVFSEEGL-D-AHLERIAREAGVGSGTLYRNFPTREA 60 (194)
T ss_dssp HHHHHHHHHHHHCT-T-CCHHHHHHHTTCCHHHHHHHCCSHHH
T ss_pred HHHHHHHHHHhcCc-C-CCHHHHHHHhCCChHHHHHHcCCHHH
Confidence 34455566888887 5 78999999999999999999988743
No 233
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=38.79 E-value=76 Score=20.31 Aligned_cols=41 Identities=27% Similarity=0.210 Sum_probs=31.0
Q ss_pred CCCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHhhc
Q psy11996 14 RTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQN 60 (222)
Q Consensus 14 R~~~t~~q~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WF~n 60 (222)
-..+|..+..+|.-.+.-. ...++|..+|++...|+....+
T Consensus 27 ~~~Lt~rE~~Vl~l~~~G~------s~~eIA~~L~iS~~TV~~~~~~ 67 (90)
T 3ulq_B 27 QDVLTPRECLILQEVEKGF------TNQEIADALHLSKRSIEYSLTS 67 (90)
T ss_dssp --CCCHHHHHHHHHHHTTC------CHHHHHHHHTCCHHHHHHHHHH
T ss_pred ccCCCHHHHHHHHHHHcCC------CHHHHHHHHCcCHHHHHHHHHH
Confidence 4579999999998776322 3677899999999999987644
No 234
>2b5a_A C.BCLI; helix-turn-helix motif, gene regulation; 1.54A {Bacillus caldolyticus} SCOP: a.35.1.3
Probab=38.72 E-value=24 Score=21.24 Aligned_cols=23 Identities=22% Similarity=0.104 Sum_probs=19.7
Q ss_pred HHHHHHHhCCChHHHHHHhhcch
Q psy11996 40 RIEIAHALCLTERQIKIWFQNRR 62 (222)
Q Consensus 40 ~~~la~~~~l~~~~v~~WF~nrR 62 (222)
..+||..+|++...|..|...++
T Consensus 26 q~~lA~~~gis~~~i~~~e~g~~ 48 (77)
T 2b5a_A 26 QEELADLAGLHRTYISEVERGDR 48 (77)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTCS
T ss_pred HHHHHHHHCCCHHHHHHHHCCCC
Confidence 56799999999999999987554
No 235
>1r69_A Repressor protein CI; gene regulating protein; 2.00A {Phage 434} SCOP: a.35.1.2 PDB: 1pra_A 1per_L 1rpe_L* 2or1_L* 1r63_A 2r63_A 1sq8_A
Probab=38.61 E-value=24 Score=20.64 Aligned_cols=23 Identities=17% Similarity=0.248 Sum_probs=19.6
Q ss_pred HHHHHHHhCCChHHHHHHhhcch
Q psy11996 40 RIEIAHALCLTERQIKIWFQNRR 62 (222)
Q Consensus 40 ~~~la~~~~l~~~~v~~WF~nrR 62 (222)
..+||..+|++...|..|...++
T Consensus 17 q~~lA~~~gis~~~i~~~e~g~~ 39 (69)
T 1r69_A 17 QAELAQKVGTTQQSIEQLENGKT 39 (69)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 56799999999999999986654
No 236
>1rzs_A Antirepressor, regulatory protein CRO; helix-turn-helix, DNA-binding protein, structural evolution, transcription; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=38.13 E-value=19 Score=21.32 Aligned_cols=19 Identities=21% Similarity=0.492 Sum_probs=17.7
Q ss_pred HHHHHHHhCCChHHHHHHh
Q psy11996 40 RIEIAHALCLTERQIKIWF 58 (222)
Q Consensus 40 ~~~la~~~~l~~~~v~~WF 58 (222)
..+||..+|++..-|..|.
T Consensus 13 q~~lA~~lGvs~~~Vs~we 31 (61)
T 1rzs_A 13 QRAVAKALGISDAAVSQWK 31 (61)
T ss_dssp HHHHHHHHTCCHHHHHHCC
T ss_pred HHHHHHHhCCCHHHHHHHH
Confidence 5779999999999999998
No 237
>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1
Probab=38.00 E-value=89 Score=21.03 Aligned_cols=49 Identities=12% Similarity=-0.010 Sum_probs=34.9
Q ss_pred CCCCCCCCCCHHHHHHHHHHhhhCCCCCH-HHHHHHHHHhCCChHHHHHHh
Q psy11996 9 ETKRQRTSYTRYQTLELEKEFHFNRYLTR-RRRIEIAHALCLTERQIKIWF 58 (222)
Q Consensus 9 ~~~r~R~~~t~~q~~~L~~~f~~~~~p~~-~~~~~la~~~~l~~~~v~~WF 58 (222)
++.+....-|.+|+..-+..+..+. ++. +....|+..+|+++.++..=.
T Consensus 12 ~~~~~~~~aTaeQ~rLAq~i~~~~d-~d~eekVk~L~EmtG~seeeAr~AL 61 (104)
T 1wj7_A 12 TQHKQRPQATAEQIRLAQMISDHND-ADFEEKVKQLIDITGKNQDECVIAL 61 (104)
T ss_dssp CTTCCSSSSSHHHHHHHHHHHHSCC-HHHHHHHHHHHHHTCCCHHHHHHHH
T ss_pred CccccccccCHHHHHHHHHHhcCCc-ccHHHHHHHHHHhhCCCHHHHHHHH
Confidence 3444556889999999988876654 543 355567777799999887644
No 238
>3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda}
Probab=37.76 E-value=25 Score=21.63 Aligned_cols=24 Identities=8% Similarity=0.162 Sum_probs=20.4
Q ss_pred HHHHHHHhCCChHHHHHHhhcchh
Q psy11996 40 RIEIAHALCLTERQIKIWFQNRRM 63 (222)
Q Consensus 40 ~~~la~~~~l~~~~v~~WF~nrR~ 63 (222)
..+||..+|++...|..|...++.
T Consensus 28 q~~lA~~~gvs~~~is~~e~g~~~ 51 (80)
T 3kz3_A 28 YESVADKMGMGQSAVAALFNGINA 51 (80)
T ss_dssp HHHHHHHTTSCHHHHHHHHTTSSC
T ss_pred HHHHHHHhCcCHHHHHHHHcCCCC
Confidence 567999999999999999876653
No 239
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=37.34 E-value=63 Score=24.05 Aligned_cols=47 Identities=11% Similarity=0.036 Sum_probs=33.4
Q ss_pred CCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHhhcchhHHHHH
Q psy11996 17 YTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKE 68 (222)
Q Consensus 17 ~t~~q~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WF~nrR~k~~~~ 68 (222)
+++.+..+|.-.|-.. ....++|..+|++...|+.+...-+.+.++.
T Consensus 188 L~~~~r~vl~l~~~~g-----~s~~EIA~~lgis~~~V~~~~~ra~~~Lr~~ 234 (239)
T 1rp3_A 188 LPEREKLVIQLIFYEE-----LPAKEVAKILETSVSRVSQLKAKALERLREM 234 (239)
T ss_dssp SCHHHHHHHHHHHTSC-----CCHHHHHHHTTSCHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhcC-----CCHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Confidence 5566666666655332 2356789999999999999987767666654
No 240
>2kz5_A Transcription factor NF-E2 45 kDa subunit; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}
Probab=37.24 E-value=67 Score=20.95 Aligned_cols=32 Identities=28% Similarity=0.102 Sum_probs=24.0
Q ss_pred CHHHHHHHHHHhCCChHHHH-HHhhcchhHHHH
Q psy11996 36 TRRRRIEIAHALCLTERQIK-IWFQNRRMKWKK 67 (222)
Q Consensus 36 ~~~~~~~la~~~~l~~~~v~-~WF~nrR~k~~~ 67 (222)
...+-.+|....+|++.|+. +|=.-||.|.|-
T Consensus 44 pv~efn~ll~~~~Ls~~Ql~lIrdiRRRgKNKv 76 (91)
T 2kz5_A 44 PVDDFNELLARYPLTESQLALVRDIRRRGKNKV 76 (91)
T ss_dssp CHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHcCCCHHHHHHHHHHHHHhhhHH
Confidence 56778888999999999987 665555655543
No 241
>2qwt_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative; 2.30A {Mycobacterium vanbaalenii pyr-1}
Probab=36.80 E-value=22 Score=25.85 Aligned_cols=39 Identities=13% Similarity=0.008 Sum_probs=31.4
Q ss_pred HHHHHHhhhhcCCCCHHHHHHHHHHcCCChhhHHHHHhhhh
Q psy11996 146 TLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRR 186 (222)
Q Consensus 146 ~~~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nrR 186 (222)
+..-...|....| . .....||...|++..-|..+|.++-
T Consensus 19 l~aA~~lf~~~G~-~-~t~~~IA~~agvs~~tlY~~F~sK~ 57 (196)
T 2qwt_A 19 LEVAYDTFAAEGL-G-VPMDEIARRAGVGAGTVYRHFPTKQ 57 (196)
T ss_dssp HHHHHHHHHHTCT-T-SCHHHHHHHTTSCHHHHHHHCSSHH
T ss_pred HHHHHHHHHhcCC-C-CCHHHHHHHhCCCHHHHHHHCCCHH
Confidence 3344555888887 4 6889999999999999999998874
No 242
>1j7q_A CAVP, calcium vector protein; EF-hand family, calcium binding protein, metal binding protein; NMR {Branchiostoma lanceolatum} SCOP: a.39.1.5 PDB: 1j7r_A
Probab=35.98 E-value=73 Score=19.31 Aligned_cols=46 Identities=15% Similarity=0.092 Sum_probs=33.8
Q ss_pred CCCCCHHHHHHHHHHhhh-----CCCCCHHHHHHHHHHhC--CChHH---HHHHhh
Q psy11996 14 RTSYTRYQTLELEKEFHF-----NRYLTRRRRIEIAHALC--LTERQ---IKIWFQ 59 (222)
Q Consensus 14 R~~~t~~q~~~L~~~f~~-----~~~p~~~~~~~la~~~~--l~~~~---v~~WF~ 59 (222)
...++.+++..|...|.. +-+.+..+...+...+| ++..+ |..+|.
T Consensus 5 ~~~l~~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~g~~~~~~~~~~~~~~~~ 60 (86)
T 1j7q_A 5 ARALGPEEKDECMKIFDIFDRNAENIAPVSDTMDMLTKLGQTYTKRETEAIMKEAR 60 (86)
T ss_dssp CCCCSSTHHHHHHHHHHHHSTTTTSCBCHHHHHHHHHHTSCCCSHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 345788888888888733 44788889888888887 55666 766663
No 243
>1y7y_A C.AHDI; helix-turn-helix, DNA-binding protein, transcriptional regulator, transcription regulator; 1.69A {Aeromonas hydrophila} SCOP: a.35.1.3
Probab=35.49 E-value=30 Score=20.57 Aligned_cols=23 Identities=13% Similarity=0.004 Sum_probs=19.8
Q ss_pred HHHHHHHhCCChHHHHHHhhcch
Q psy11996 40 RIEIAHALCLTERQIKIWFQNRR 62 (222)
Q Consensus 40 ~~~la~~~~l~~~~v~~WF~nrR 62 (222)
..+||..+|++...|..|...++
T Consensus 29 ~~~lA~~~gis~~~i~~~e~g~~ 51 (74)
T 1y7y_A 29 QETLAFLSGLDRSYVGGVERGQR 51 (74)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTCS
T ss_pred HHHHHHHHCcCHHHHHHHHCCCC
Confidence 56799999999999999987654
No 244
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=35.22 E-value=34 Score=19.66 Aligned_cols=27 Identities=15% Similarity=0.136 Sum_probs=21.3
Q ss_pred HHHHHHHcCCChhhHHHHHhhhhhhHH
Q psy11996 164 RIEIAHALCLTERQIKIWFQNRRMKWK 190 (222)
Q Consensus 164 ~~~la~~l~l~~~~V~~WF~nrR~k~k 190 (222)
..++|..+|++..-|+.+..+-+.|.+
T Consensus 16 ~~eIA~~l~is~~tV~~~~~~~~~kl~ 42 (61)
T 2jpc_A 16 NHGISEKLHISIKTVETHRMNMMRKLQ 42 (61)
T ss_dssp SHHHHHHTCSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHC
Confidence 357899999999999999876555443
No 245
>3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1}
Probab=35.17 E-value=29 Score=20.95 Aligned_cols=23 Identities=17% Similarity=0.258 Sum_probs=20.1
Q ss_pred HHHHHHHhCCChHHHHHHhhcch
Q psy11996 40 RIEIAHALCLTERQIKIWFQNRR 62 (222)
Q Consensus 40 ~~~la~~~~l~~~~v~~WF~nrR 62 (222)
..+||..+|++...|..|...++
T Consensus 23 q~~lA~~~gis~~~i~~~e~g~~ 45 (78)
T 3b7h_A 23 INRVATLAGLNQSTVNAMFEGRS 45 (78)
T ss_dssp HHHHHHHHTCCHHHHHHHHCTTC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 56799999999999999987665
No 246
>2a6c_A Helix-turn-helix motif; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: CIT; 1.90A {Nitrosomonas europaea} SCOP: a.35.1.13
Probab=35.07 E-value=31 Score=21.48 Aligned_cols=23 Identities=13% Similarity=0.228 Sum_probs=20.6
Q ss_pred HHHHHHHhCCChHHHHHHhhcch
Q psy11996 40 RIEIAHALCLTERQIKIWFQNRR 62 (222)
Q Consensus 40 ~~~la~~~~l~~~~v~~WF~nrR 62 (222)
..+||..+|++...|..|...++
T Consensus 34 q~elA~~~gis~~~is~~e~g~~ 56 (83)
T 2a6c_A 34 QFKAAELLGVTQPRVSDLMRGKI 56 (83)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTCG
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 57799999999999999998776
No 247
>3i5g_B Myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_B 3i5h_B 3i5i_B
Probab=34.99 E-value=69 Score=22.39 Aligned_cols=45 Identities=13% Similarity=0.251 Sum_probs=35.0
Q ss_pred CCcCCHHHHHHHHHhhh-----hcCCCCHHHHHHHHHHcCCC--hhhHHHHH
Q psy11996 138 RTSYTRYQTLELEKEFH-----FNRYLTRRRRIEIAHALCLT--ERQIKIWF 182 (222)
Q Consensus 138 r~~~~~~q~~~L~~~F~-----~~~~p~~~~~~~la~~l~l~--~~~V~~WF 182 (222)
+..+|.+|+..|+..|. .+.+.+..+...+...+|+. ...+...+
T Consensus 7 ~~~Lt~~qi~elk~~F~~~D~d~dG~I~~~El~~~l~~lg~~~~~~~~~~~~ 58 (153)
T 3i5g_B 7 RVKLSQRQMQELKEAFTMIDQDRDGFIGMEDLKDMFSSLGRVPPDDELNAML 58 (153)
T ss_dssp CTTCCHHHHHHHHHHHHHHCCSTTSCCCHHHHHHHHHHTTSCCCHHHHHHHH
T ss_pred ccCCCHHHHHHHHHHHHHHCCCCCCeEcHHHHHHHHHHcCCCccHHHHHHHH
Confidence 56799999999999996 45678999998888888864 44555444
No 248
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=34.97 E-value=69 Score=23.02 Aligned_cols=29 Identities=14% Similarity=0.034 Sum_probs=23.7
Q ss_pred HHHHHHHhCCChHHHHHHhhcchhHHHHH
Q psy11996 40 RIEIAHALCLTERQIKIWFQNRRMKWKKE 68 (222)
Q Consensus 40 ~~~la~~~~l~~~~v~~WF~nrR~k~~~~ 68 (222)
..++|..+|++...|+.+...-|.+.++.
T Consensus 159 ~~EIA~~lgis~~tV~~~l~ra~~~Lr~~ 187 (194)
T 1or7_A 159 YEEIAAIMDCPVGTVRSRIFRAREAIDNK 187 (194)
T ss_dssp HHHHHHHTTSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 56789999999999999987766666654
No 249
>2kpj_A SOS-response transcriptional repressor, LEXA; NESG, GFT, structural genomics, PSI-2, protein structure initiative; NMR {Eubacterium rectale atcc 33656}
Probab=34.77 E-value=29 Score=22.17 Aligned_cols=24 Identities=17% Similarity=0.516 Sum_probs=20.6
Q ss_pred HHHHHHHhCCChHHHHHHhhcchh
Q psy11996 40 RIEIAHALCLTERQIKIWFQNRRM 63 (222)
Q Consensus 40 ~~~la~~~~l~~~~v~~WF~nrR~ 63 (222)
..+||..+|++...|..|...++.
T Consensus 25 q~~lA~~~gis~~~is~~e~G~~~ 48 (94)
T 2kpj_A 25 QLEIAKSIGVSPQTFNTWCKGIAI 48 (94)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTSCC
T ss_pred HHHHHHHHCcCHHHHHHHHhCCCC
Confidence 577999999999999999977543
No 250
>2q0o_A Probable transcriptional activator protein TRAR; helix-turn-helix, two-helix coiled coil; HET: LAE; 2.00A {Rhizobium SP}
Probab=33.69 E-value=72 Score=24.19 Aligned_cols=46 Identities=13% Similarity=0.091 Sum_probs=35.2
Q ss_pred CCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHcCCChhhHHHHHhhhhhhH
Q psy11996 138 RTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKW 189 (222)
Q Consensus 138 r~~~~~~q~~~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nrR~k~ 189 (222)
...+|+.+..+|.-.+... ...++|..+|++..-|+....+-+.|.
T Consensus 173 ~~~Lt~~e~~vl~~~~~g~------s~~eIa~~l~is~~tV~~~~~~~~~kl 218 (236)
T 2q0o_A 173 KQMLSPREMLCLVWASKGK------TASVTANLTGINARTVQHYLDKARAKL 218 (236)
T ss_dssp GGSCCHHHHHHHHHHHTTC------CHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHcCC------CHHHHHHHHCcCHHHHHHHHHHHHHHh
Confidence 4569999999997754332 356789999999999999987655543
No 251
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=33.64 E-value=0.69 Score=34.27 Aligned_cols=30 Identities=7% Similarity=-0.067 Sum_probs=21.4
Q ss_pred CCCCCCCCcCCHHHHHHHHHhhhhcCCCCH
Q psy11996 132 GETKRQRTSYTRYQTLELEKEFHFNRYLTR 161 (222)
Q Consensus 132 ~~~~~~r~~~~~~q~~~L~~~F~~~~~p~~ 161 (222)
...++.|+.|+..|+..|+..|+.+++|..
T Consensus 134 ~~~~rprt~~~~~q~~~l~~~f~~~~~~~~ 163 (169)
T 2rgt_A 134 SGGSGGGTPMVAASPERHDGGLQANPVEVQ 163 (169)
T ss_dssp -------EEEECCCCEECCSSCCCCCCCCC
T ss_pred CCCcCCCCcccHHHHHHHHHHHhCCCCccc
Confidence 456788999999999999999999999863
No 252
>1j9i_A GPNU1 DBD;, terminase small subunit; DNA binding domain, homodimer, viral assembly, winged helix-turn-helix, viral protein; NMR {Enterobacteria phage lambda} SCOP: a.6.1.5
Probab=33.10 E-value=35 Score=20.53 Aligned_cols=20 Identities=20% Similarity=0.425 Sum_probs=17.5
Q ss_pred HHHHHHHhCCChHHHHHHhh
Q psy11996 40 RIEIAHALCLTERQIKIWFQ 59 (222)
Q Consensus 40 ~~~la~~~~l~~~~v~~WF~ 59 (222)
..++|..||++...|..|-.
T Consensus 5 ~~e~a~~LgvS~~Tl~rw~~ 24 (68)
T 1j9i_A 5 KKQLADIFGASIRTIQNWQE 24 (68)
T ss_dssp HHHHHHHTTCCHHHHHHHTT
T ss_pred HHHHHHHHCcCHHHHHHHHH
Confidence 46789999999999999974
No 253
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=32.95 E-value=71 Score=21.05 Aligned_cols=52 Identities=15% Similarity=0.109 Sum_probs=36.8
Q ss_pred cCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHcCCChhhHHHHHhhhhhhHHHh
Q psy11996 140 SYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKE 192 (222)
Q Consensus 140 ~~~~~q~~~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nrR~k~kk~ 192 (222)
.+++.+..++...|..+.. ......++|..+|++...|+..-..-..+.|..
T Consensus 19 ~Lp~reR~Vi~Lry~l~~~-e~~s~~EIA~~lgiS~~tVr~~~~rAlkkLR~~ 70 (99)
T 3t72_q 19 GLTAREAKVLRMRFGIDMN-TDYTLEEVGKQFDVTRERIRQIEAKALRKLRHP 70 (99)
T ss_pred cCCHHHHHHHHHHHhcCCC-CCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence 4678888888887753211 123467789999999999999887666665554
No 254
>2wiu_B HTH-type transcriptional regulator HIPB; transferase transcription complex, serine kinase, DNA-bindin mercury derivative, repressor; 2.35A {Escherichia coli} PDB: 3dnv_B* 3dnw_B* 3hzi_B*
Probab=32.77 E-value=39 Score=20.89 Aligned_cols=24 Identities=17% Similarity=0.219 Sum_probs=20.5
Q ss_pred HHHHHHHhCCChHHHHHHhhcchh
Q psy11996 40 RIEIAHALCLTERQIKIWFQNRRM 63 (222)
Q Consensus 40 ~~~la~~~~l~~~~v~~WF~nrR~ 63 (222)
..+||..+|++...|..|...++.
T Consensus 28 q~~lA~~~gis~~~i~~~e~g~~~ 51 (88)
T 2wiu_B 28 QSELAKKIGIKQATISNFENNPDN 51 (88)
T ss_dssp HHHHHHHHTCCHHHHHHHHHCGGG
T ss_pred HHHHHHHhCCCHHHHHHHHcCCCC
Confidence 567999999999999999977543
No 255
>2k9q_A Uncharacterized protein; all helix, helix-turn-helix, plasmid, structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=32.64 E-value=34 Score=20.78 Aligned_cols=23 Identities=13% Similarity=0.124 Sum_probs=20.0
Q ss_pred HHHHHHHhCCChHHHHHHhhcch
Q psy11996 40 RIEIAHALCLTERQIKIWFQNRR 62 (222)
Q Consensus 40 ~~~la~~~~l~~~~v~~WF~nrR 62 (222)
..+||..+|++...|..|-.+++
T Consensus 18 q~~lA~~~gis~~~i~~~e~g~~ 40 (77)
T 2k9q_A 18 AKSVAEEMGISRQQLCNIEQSET 40 (77)
T ss_dssp HHHHHHHHTSCHHHHHHHHTCCS
T ss_pred HHHHHHHhCCCHHHHHHHHcCCC
Confidence 56799999999999999987764
No 256
>2ktg_A Calmodulin, putative; ehcam, Ca-binding protein, partially structured protein, CAM-like; NMR {Entamoeba histolytica} PDB: 2lc5_A
Probab=32.41 E-value=75 Score=19.09 Aligned_cols=46 Identities=20% Similarity=0.224 Sum_probs=33.8
Q ss_pred CCCCCHHHHHHHHHHhhh-----CCCCCHHHHHHHHHHhC--CChHHHHHHhh
Q psy11996 14 RTSYTRYQTLELEKEFHF-----NRYLTRRRRIEIAHALC--LTERQIKIWFQ 59 (222)
Q Consensus 14 R~~~t~~q~~~L~~~f~~-----~~~p~~~~~~~la~~~~--l~~~~v~~WF~ 59 (222)
...++.+++..|...|.. +-+.+..+...+...+| ++...|...|.
T Consensus 5 ~~~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~ 57 (85)
T 2ktg_A 5 KKVLTAEEQQEYKEAFQLFDKDNDNKLTAEELGTVMRALGANPTKQKISEIVK 57 (85)
T ss_dssp CCSSSHHHHHHHHHHHHHTCTTCCSEEEHHHHHHHHHTTSSCCCHHHHHHHHH
T ss_pred hhhCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 346889999999999844 33677788888777776 56677777763
No 257
>2opo_A Polcalcin CHE A 3; calcium-binding protein, dimer, domain-swapping, EF-hand; 1.75A {Chenopodium album} SCOP: a.39.1.10 PDB: 1h4b_A
Probab=31.48 E-value=58 Score=19.75 Aligned_cols=45 Identities=11% Similarity=0.114 Sum_probs=30.8
Q ss_pred CCCCHHHHHHHHHHhhh-----CCCCCHHHHHHHHHHhC-CChHHHHHHhh
Q psy11996 15 TSYTRYQTLELEKEFHF-----NRYLTRRRRIEIAHALC-LTERQIKIWFQ 59 (222)
Q Consensus 15 ~~~t~~q~~~L~~~f~~-----~~~p~~~~~~~la~~~~-l~~~~v~~WF~ 59 (222)
..+++++...|...|.. +-+.+..+...+...+| ++...|...|.
T Consensus 3 ~~~~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~ 53 (86)
T 2opo_A 3 AEDTPQDIADRERIFKRFDTNGDGKISSSELGDALKTLGSVTPDEVRRMMA 53 (86)
T ss_dssp ---CHHHHHHHHHHHHHHCTTCSSEEEHHHHHHHHHTTTTCCHHHHHHHHH
T ss_pred ccCCHhhHHHHHHHHHHHCCCCCCCcCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 35788888899988843 34677778777777776 66777777763
No 258
>1l3l_A Transcriptional activator protein TRAR; helix-turn-helix DNA binding motif, alpha/beta/alpha sandwich; HET: LAE; 1.66A {Agrobacterium tumefaciens} SCOP: a.4.6.2 d.110.5.1 PDB: 1h0m_A*
Probab=31.20 E-value=99 Score=23.37 Aligned_cols=46 Identities=9% Similarity=-0.036 Sum_probs=35.0
Q ss_pred CCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHcCCChhhHHHHHhhhhhhH
Q psy11996 138 RTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKW 189 (222)
Q Consensus 138 r~~~~~~q~~~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nrR~k~ 189 (222)
...+++.+..+|.-..... ...++|..+|++..-|+....+-+.|.
T Consensus 171 ~~~Lt~~e~~vl~~~~~g~------s~~eIa~~l~is~~tV~~~~~~~~~kl 216 (234)
T 1l3l_A 171 AAWLDPKEATYLRWIAVGK------TMEEIADVEGVKYNSVRVKLREAMKRF 216 (234)
T ss_dssp CCCCCHHHHHHHHHHTTTC------CHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHcCC------CHHHHHHHHCcCHHHHHHHHHHHHHHh
Confidence 4569999999997754322 356789999999999999987655543
No 259
>2ef8_A C.ECOT38IS, putative transcription factor; helix-turn-helix, DNA binding protein, transcription regulator; HET: CME; 1.95A {Enterobacteria phage P2}
Probab=31.06 E-value=37 Score=20.74 Aligned_cols=23 Identities=26% Similarity=0.182 Sum_probs=19.9
Q ss_pred HHHHHHHhCCChHHHHHHhhcch
Q psy11996 40 RIEIAHALCLTERQIKIWFQNRR 62 (222)
Q Consensus 40 ~~~la~~~~l~~~~v~~WF~nrR 62 (222)
..+||..+|++...|..|-..++
T Consensus 26 q~~lA~~~gis~~~i~~~e~g~~ 48 (84)
T 2ef8_A 26 QSELAIFLGLSQSDISKIESFER 48 (84)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTSS
T ss_pred HHHHHHHhCCCHHHHHHHHcCCC
Confidence 56799999999999999987654
No 260
>2q1z_A RPOE, ECF SIGE; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_A
Probab=30.82 E-value=17 Score=26.27 Aligned_cols=47 Identities=17% Similarity=0.106 Sum_probs=33.1
Q ss_pred CCHHHHHHHHHhhhhcCCCCHHHHHHHHHHcCCChhhHHHHHhhhhhhHHHh
Q psy11996 141 YTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKE 192 (222)
Q Consensus 141 ~~~~q~~~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nrR~k~kk~ 192 (222)
+++.+..+|...|-..- ...++|..+|++...|+.+...-|.+.|+.
T Consensus 136 L~~~~r~vl~l~~~~g~-----s~~eIA~~lgis~~tV~~~l~ra~~~Lr~~ 182 (184)
T 2q1z_A 136 LPEAQRALIERAFFGDL-----THRELAAETGLPLGTIKSRIRLALDRLRQH 182 (184)
T ss_dssp SCHHHHHHHHHHHHSCC-----SSCCSTTTCCCCCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCC-----CHHHHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence 56777777766543321 234568899999999999998777766653
No 261
>2ict_A Antitoxin HIGA; helix-turn-helix, structural genomics, PSI-2, protein struct initiative, northeast structural genomics consortium, NESG; 1.63A {Escherichia coli} SCOP: a.35.1.3 PDB: 2icp_A
Probab=30.47 E-value=38 Score=21.51 Aligned_cols=23 Identities=13% Similarity=0.127 Sum_probs=19.5
Q ss_pred HHHHHHHhCCChHHHHHHhhcch
Q psy11996 40 RIEIAHALCLTERQIKIWFQNRR 62 (222)
Q Consensus 40 ~~~la~~~~l~~~~v~~WF~nrR 62 (222)
..+||..+|++...|..|..+++
T Consensus 24 q~~lA~~~gis~~~is~~e~g~~ 46 (94)
T 2ict_A 24 LREFARAMEIAPSTASRLLTGKA 46 (94)
T ss_dssp HHHHHHHHTCCHHHHHHHHHTSS
T ss_pred HHHHHHHhCCCHHHHHHHHcCCC
Confidence 57799999999999999986543
No 262
>2lhi_A Calmodulin, serine/threonine-protein phosphatase catalytic subunit A1; yeast calmodulin, CNA1, metal binding protein; NMR {Saccharomyces cerevisiae}
Probab=30.36 E-value=33 Score=24.82 Aligned_cols=45 Identities=18% Similarity=0.290 Sum_probs=33.2
Q ss_pred CCCCCHHHHHHHHHHhhh-----CCCCCHHHHHHHHHHhCCC--hHHHHHHh
Q psy11996 14 RTSYTRYQTLELEKEFHF-----NRYLTRRRRIEIAHALCLT--ERQIKIWF 58 (222)
Q Consensus 14 R~~~t~~q~~~L~~~f~~-----~~~p~~~~~~~la~~~~l~--~~~v~~WF 58 (222)
++.+|.+|+..|+..|.. +-+.+..+...+...+|+. ...|...|
T Consensus 2 a~~Lt~eqi~elk~~F~~~D~d~dG~I~~~El~~~l~~lg~~~~~~~~~~~~ 53 (176)
T 2lhi_A 2 SSNLTEEQIAEFKEAFALFDKDNNGSISSSELATVMRSLGLSPSEAEVNDLM 53 (176)
T ss_dssp CCCCCTTGGGHHHHHHHTTCSSCSSCBCHHHHHHHHHHHTCCCCHHHHHHHH
T ss_pred CCcCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHcCCChhHHHHHHHH
Confidence 468999999999999843 4478888888888888754 44444443
No 263
>2q24_A Putative TETR family transcriptional regulator; structural genomics, PSI, protein structure initiative; 1.80A {Streptomyces coelicolor A3}
Probab=30.24 E-value=30 Score=24.82 Aligned_cols=44 Identities=11% Similarity=-0.005 Sum_probs=34.5
Q ss_pred HHHHHHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHhhcchhHHH
Q psy11996 21 QTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWK 66 (222)
Q Consensus 21 q~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WF~nrR~k~~ 66 (222)
=+..-...|...-| . .....+|+..|++..-|..+|.++-.-..
T Consensus 20 Il~aA~~lf~~~G~-~-~s~~~IA~~agvs~~tlY~~F~sK~~L~~ 63 (194)
T 2q24_A 20 ILAAAVRVFSEEGL-D-AHLERIAREAGVGSGTLYRNFPTREALIE 63 (194)
T ss_dssp HHHHHHHHHHHHCT-T-CCHHHHHHHTTCCHHHHHHHCCSHHHHHH
T ss_pred HHHHHHHHHHhcCc-C-CCHHHHHHHhCCChHHHHHHcCCHHHHHH
Confidence 34455566888777 5 68889999999999999999999855543
No 264
>3clo_A Transcriptional regulator; NP_811094.1, bacterial regulatory proteins, LUXR family, structural genomics; 2.04A {Bacteroides thetaiotaomicron vpi-5482}
Probab=30.23 E-value=80 Score=24.40 Aligned_cols=47 Identities=17% Similarity=-0.033 Sum_probs=36.6
Q ss_pred CcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHcCCChhhHHHHHhhhhhhHHH
Q psy11996 139 TSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKK 191 (222)
Q Consensus 139 ~~~~~~q~~~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nrR~k~kk 191 (222)
..+++.+..+|.-.++.- ...++|+.+|++..-|+....+-|.+.+.
T Consensus 196 ~~L~~~erevl~L~~~G~------s~~EIA~~L~iS~~TVk~~l~ra~~kL~~ 242 (258)
T 3clo_A 196 NILSEREKEILRCIRKGL------SSKEIAATLYISVNTVNRHRQNILEKLSV 242 (258)
T ss_dssp TSSCHHHHHHHHHHHTTC------CHHHHHHHHTCCHHHHHHHHHHHHHHTTC
T ss_pred ccCCHHHHHHHHHHHcCC------CHHHHHHHHCcCHHHHHHHHHHHHHHHcC
Confidence 468999999998865332 36678999999999999998876665554
No 265
>3f6w_A XRE-family like protein; helix-turn-helix, DNA binding protein, xenobiotic response E family of transcriptional regulators; HET: MSE BTB; 1.85A {Pseudomonas syringae PV}
Probab=29.81 E-value=40 Score=20.68 Aligned_cols=23 Identities=17% Similarity=0.072 Sum_probs=19.5
Q ss_pred HHHHHHHhCCChHHHHHHhhcch
Q psy11996 40 RIEIAHALCLTERQIKIWFQNRR 62 (222)
Q Consensus 40 ~~~la~~~~l~~~~v~~WF~nrR 62 (222)
..+||..+|++...|..|-..++
T Consensus 30 q~elA~~~gis~~~is~~e~g~~ 52 (83)
T 3f6w_A 30 QKELAARLGRPQSFVSKTENAER 52 (83)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSS
T ss_pred HHHHHHHHCcCHHHHHHHHCCCC
Confidence 56799999999999999986653
No 266
>3u0k_A Rcamp; fluorescent protein, calcium binding, EF-hand, genetically E calcium indicator; HET: NFA CRK; 2.10A {Entacmaea quadricolor}
Probab=29.44 E-value=83 Score=26.96 Aligned_cols=45 Identities=20% Similarity=0.208 Sum_probs=35.2
Q ss_pred CCCCCHHHHHHHHHHhh-----hCCCCCHHHHHHHHHHhC--CChHHHHHHh
Q psy11996 14 RTSYTRYQTLELEKEFH-----FNRYLTRRRRIEIAHALC--LTERQIKIWF 58 (222)
Q Consensus 14 R~~~t~~q~~~L~~~f~-----~~~~p~~~~~~~la~~~~--l~~~~v~~WF 58 (222)
+..|+.+|+..|++.|. .+-+.+..+...+...+| ++..+|..-|
T Consensus 293 ~E~Lt~EEI~ELREaF~~fDkDgdG~IS~eELk~aLrsLG~~~TeeEI~~Lf 344 (440)
T 3u0k_A 293 RDQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMI 344 (440)
T ss_dssp CBCCCHHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HhhhhHHHHHHHHHHHHHHcCCCCCEECHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 56799999999999984 445788889888888887 4566666655
No 267
>2qwt_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative; 2.30A {Mycobacterium vanbaalenii pyr-1}
Probab=29.44 E-value=41 Score=24.27 Aligned_cols=42 Identities=12% Similarity=-0.035 Sum_probs=33.0
Q ss_pred HHHHHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHhhcchhHH
Q psy11996 22 TLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKW 65 (222)
Q Consensus 22 ~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WF~nrR~k~ 65 (222)
+..-...|...-| . .....+|+..|++..-|..+|.++-.-.
T Consensus 19 l~aA~~lf~~~G~-~-~t~~~IA~~agvs~~tlY~~F~sK~~L~ 60 (196)
T 2qwt_A 19 LEVAYDTFAAEGL-G-VPMDEIARRAGVGAGTVYRHFPTKQALV 60 (196)
T ss_dssp HHHHHHHHHHTCT-T-SCHHHHHHHTTSCHHHHHHHCSSHHHHH
T ss_pred HHHHHHHHHhcCC-C-CCHHHHHHHhCCCHHHHHHHCCCHHHHH
Confidence 3344455888877 5 6788899999999999999999985543
No 268
>1avs_A Troponin C; muscle contraction, calcium-activated, E-F hand calcium-binding protein; 1.75A {Gallus gallus} SCOP: a.39.1.5 PDB: 1blq_A 1skt_A 1tnp_A 1tnq_A 1zac_A 1smg_A 1npq_A 1trf_A
Probab=29.29 E-value=1e+02 Score=18.86 Aligned_cols=44 Identities=9% Similarity=0.132 Sum_probs=33.1
Q ss_pred CCCHHHHHHHHHHhhh-----CCCCCHHHHHHHHHHhC--CChHHHHHHhh
Q psy11996 16 SYTRYQTLELEKEFHF-----NRYLTRRRRIEIAHALC--LTERQIKIWFQ 59 (222)
Q Consensus 16 ~~t~~q~~~L~~~f~~-----~~~p~~~~~~~la~~~~--l~~~~v~~WF~ 59 (222)
.++.+++..|...|.. +-+.+..+...+...+| ++..+|..+|.
T Consensus 13 ~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~l~~ 63 (90)
T 1avs_A 13 FLSEEMIAEFKAAFDMFDADGGGDISTKELGTVMRMLGQNPTKEELDAIIE 63 (90)
T ss_dssp HBCHHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 5788899999988843 34678888888888877 55777777763
No 269
>3t76_A VANU, transcriptional regulator vanug; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.12A {Enterococcus faecalis} PDB: 3t75_A* 3tyr_A* 3tys_A*
Probab=29.27 E-value=42 Score=21.56 Aligned_cols=23 Identities=13% Similarity=0.140 Sum_probs=20.4
Q ss_pred HHHHHHHhCCChHHHHHHhhcch
Q psy11996 40 RIEIAHALCLTERQIKIWFQNRR 62 (222)
Q Consensus 40 ~~~la~~~~l~~~~v~~WF~nrR 62 (222)
..+||..+|++...|..|..+++
T Consensus 40 q~eLA~~~GiS~~tis~iE~G~~ 62 (88)
T 3t76_A 40 KGELREAVGVSKSTFAKLGKNEN 62 (88)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTCC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 67899999999999999998765
No 270
>2joj_A Centrin protein; N-terminal domain, centrin solution structure, EF-hand calcium binding protein, cell cycle; NMR {Euplotes octocarinatus}
Probab=28.96 E-value=70 Score=18.75 Aligned_cols=43 Identities=14% Similarity=0.160 Sum_probs=29.6
Q ss_pred CCHHHHHHHHHHhhh-----CCCCCHHHHHHHHHHhCC--ChHHHHHHhh
Q psy11996 17 YTRYQTLELEKEFHF-----NRYLTRRRRIEIAHALCL--TERQIKIWFQ 59 (222)
Q Consensus 17 ~t~~q~~~L~~~f~~-----~~~p~~~~~~~la~~~~l--~~~~v~~WF~ 59 (222)
++.+++..|...|.. +-+.+..+...+...+|. +..+|...|.
T Consensus 1 ls~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~ 50 (77)
T 2joj_A 1 LSEEQKQEIKEAFDLFDTNKTGSIDYHELKVAMRALGFDVKKPEILELMN 50 (77)
T ss_dssp CCHHHHHHHHHHHHHHCCSSSSEEEHHHHHHHHHHHTCCCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 467788888888733 346777888887777774 5566666663
No 271
>2rek_A Putative TETR-family transcriptional regulator; sulfur, SAD, structural genomics, PSI-2, protein structure initiative; 1.86A {Streptomyces coelicolor A3}
Probab=28.67 E-value=20 Score=25.98 Aligned_cols=39 Identities=15% Similarity=0.046 Sum_probs=31.5
Q ss_pred HHHHHHhhhhcCCCCHHHHHHHHHHcCCChhhHHHHHhhhh
Q psy11996 146 TLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRR 186 (222)
Q Consensus 146 ~~~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nrR 186 (222)
+......|....| . .....||+..|++..-|...|.++-
T Consensus 22 l~aA~~lf~~~G~-~-~s~~~Ia~~agvs~~t~Y~~F~sK~ 60 (199)
T 2rek_A 22 IEAAAAEVARHGA-D-ASLEEIARRAGVGSATLHRHFPSRW 60 (199)
T ss_dssp HHHHHHHHHHHGG-G-CCHHHHHHHHTCCHHHHHHHCSSHH
T ss_pred HHHHHHHHHhcCC-C-CCHHHHHHHhCCchHHHHHHCCCHH
Confidence 3444556888888 5 5889999999999999999998864
No 272
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=28.35 E-value=1e+02 Score=20.22 Aligned_cols=45 Identities=9% Similarity=-0.203 Sum_probs=30.4
Q ss_pred CCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhC-------CChHHHHHHhh
Q psy11996 15 TSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALC-------LTERQIKIWFQ 59 (222)
Q Consensus 15 ~~~t~~q~~~L~~~f~~~~~p~~~~~~~la~~~~-------l~~~~v~~WF~ 59 (222)
..+++++...|......++..+..+........| ++...|..|..
T Consensus 74 ~~l~~~~~~~i~~~~~~~~~~s~~~i~~~l~~~g~~~~~~~~s~~tv~r~l~ 125 (128)
T 1pdn_C 74 RIATPEIENRIEEYKRSSPGMFSWEIREKLIREGVCDRSTAPSVSAISRLVR 125 (128)
T ss_dssp CSSCSTHHHHHHHTTTTCTTCCHHHHHHHHHHTSSSCSTTCCCHHHHHHHC-
T ss_pred CcCCHHHHHHHHHHHHhCcchHHHHHHHHHHHcCCccccCCcCHHHHHHHHH
Confidence 4678878888888887777666655444333337 48888888874
No 273
>2v57_A TETR family transcriptional repressor LFRR; DNA-binding, transcription regulation; HET: PRL; 1.90A {Mycobacterium smegmatis} PDB: 2wgb_A
Probab=27.63 E-value=28 Score=24.78 Aligned_cols=36 Identities=11% Similarity=0.038 Sum_probs=28.5
Q ss_pred HHHhhhhcCCCCHHHHHHHHHHcCCChhhHHHHHhhhhh
Q psy11996 149 LEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRM 187 (222)
Q Consensus 149 L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nrR~ 187 (222)
-...|... .......||...|++..-|..+|.++-.
T Consensus 23 A~~lf~~~---~~~t~~~Ia~~agvs~~t~Y~~F~sK~~ 58 (190)
T 2v57_A 23 AMLVLADH---PTAALGDIAAAAGVGRSTVHRYYPERTD 58 (190)
T ss_dssp HHHHHTTC---TTCCHHHHHHHHTCCHHHHHHHCSSHHH
T ss_pred HHHHHHHc---CCCCHHHHHHHhCCCHHHHHHHcCCHHH
Confidence 34446665 6667888999999999999999988743
No 274
>2jml_A DNA binding domain/transcriptional regulator; anti-repressor, MERR, carotenogenesis; HET: DNA; NMR {Myxococcus xanthus}
Probab=27.55 E-value=36 Score=21.29 Aligned_cols=20 Identities=20% Similarity=0.338 Sum_probs=17.3
Q ss_pred HHHHHHHcCCChhhHHHHHh
Q psy11996 164 RIEIAHALCLTERQIKIWFQ 183 (222)
Q Consensus 164 ~~~la~~l~l~~~~V~~WF~ 183 (222)
+.++|..+|++...|+.|-.
T Consensus 8 i~e~A~~~gvs~~tlR~ye~ 27 (81)
T 2jml_A 8 IRTIARMTGIREATLRAWER 27 (81)
T ss_dssp HHHHHHTTSTTHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHH
Confidence 56789999999999999953
No 275
>2lfw_A PHYR sigma-like domain; signal transduction, response regulator, sigma factor mimicr sigma factor, general stress response, signaling protein; NMR {Sphingomonas SP}
Probab=27.54 E-value=40 Score=23.85 Aligned_cols=47 Identities=9% Similarity=-0.049 Sum_probs=32.0
Q ss_pred CCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHhhcchhHHHH
Q psy11996 16 SYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKK 67 (222)
Q Consensus 16 ~~t~~q~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WF~nrR~k~~~ 67 (222)
.+++.+..+|.-.|-.. ....++|..+|+++..|+.....-|.+.++
T Consensus 93 ~Lp~~~r~vl~L~~~~g-----~s~~EIA~~lgis~~tV~~~l~rar~~Lr~ 139 (157)
T 2lfw_A 93 RMTPLSRQALLLTAMEG-----FSPEDAAYLIEVDTSEVETLVTEALAEIEK 139 (157)
T ss_dssp TSCTTHHHHHTTTSSSC-----CCHHHHHHTTTSCHHHHHHHHHHHHHHHHT
T ss_pred hCCHHHHHHHHHHHHcC-----CCHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 35666666665433222 236788999999999999988666655554
No 276
>1lmb_3 Protein (lambda repressor); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 1.80A {Enterobacteria phage lambda} SCOP: a.35.1.2 PDB: 1lrp_A 1rio_A 1lli_A*
Probab=27.48 E-value=45 Score=20.90 Aligned_cols=23 Identities=9% Similarity=0.205 Sum_probs=19.7
Q ss_pred HHHHHHHhCCChHHHHHHhhcch
Q psy11996 40 RIEIAHALCLTERQIKIWFQNRR 62 (222)
Q Consensus 40 ~~~la~~~~l~~~~v~~WF~nrR 62 (222)
..+||..+|++...|..|...++
T Consensus 33 q~~lA~~~gis~~~is~~e~g~~ 55 (92)
T 1lmb_3 33 QESVADKMGMGQSGVGALFNGIN 55 (92)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 57799999999999999987653
No 277
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=27.24 E-value=1.6e+02 Score=20.54 Aligned_cols=47 Identities=6% Similarity=-0.103 Sum_probs=32.0
Q ss_pred CCCCCHHHHHHHHHHhhhCCCCCHHHHHH-HHHH------hCCChHHHHHHhhc
Q psy11996 14 RTSYTRYQTLELEKEFHFNRYLTRRRRIE-IAHA------LCLTERQIKIWFQN 60 (222)
Q Consensus 14 R~~~t~~q~~~L~~~f~~~~~p~~~~~~~-la~~------~~l~~~~v~~WF~n 60 (222)
+..++.++...|...+..++..+..+... |... ..++...|..|...
T Consensus 81 ~~~~~~~~~~~I~~~~~~~~~~s~~~i~~~l~~~~~~~~~~~~S~sTV~r~L~~ 134 (159)
T 2k27_A 81 PKVATPKVVEKIGDYKRQNPTMFAWEIRDRLLAEGVCDNDTVPSVSSINRIIRT 134 (159)
T ss_dssp CCCCCTTHHHHHHHHHHHCSSSCHHHHHHHHHHHTCSCTTTSCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHCccchHHHHHHHHHHhcccccCCccCHHHHHHHHHH
Confidence 34678888888888887777666655444 3222 24788999999753
No 278
>3qq6_A HTH-type transcriptional regulator SINR; helix-turn-helix motif, biofilm, repressor, SINI; 1.90A {Bacillus subtilis}
Probab=26.94 E-value=49 Score=20.24 Aligned_cols=21 Identities=14% Similarity=0.066 Sum_probs=18.7
Q ss_pred HHHHHHHhCCChHHHHHHhhc
Q psy11996 40 RIEIAHALCLTERQIKIWFQN 60 (222)
Q Consensus 40 ~~~la~~~~l~~~~v~~WF~n 60 (222)
..+||..+|++...|..|-.+
T Consensus 26 q~elA~~~gis~~~is~~E~G 46 (78)
T 3qq6_A 26 LSELAEKAGVAKSYLSSIERN 46 (78)
T ss_dssp HHHHHHHHTCCHHHHHHHHTT
T ss_pred HHHHHHHHCcCHHHHHHHHcC
Confidence 567899999999999999876
No 279
>1skn_P DNA-binding domain of SKN-1; complex (transcription factor/DNA), transcription/DNA complex; HET: DNA LDA; 2.50A {Caenorhabditis elegans} SCOP: a.37.1.1
Probab=26.66 E-value=1.3e+02 Score=19.62 Aligned_cols=31 Identities=26% Similarity=0.130 Sum_probs=22.4
Q ss_pred CHHHHHHHHHHhCCChHHHH-HHhhcchhHHH
Q psy11996 36 TRRRRIEIAHALCLTERQIK-IWFQNRRMKWK 66 (222)
Q Consensus 36 ~~~~~~~la~~~~l~~~~v~-~WF~nrR~k~~ 66 (222)
...+...|....+|++.|+. ++-.-||.|.+
T Consensus 40 pv~efn~lLk~~~Ls~~Ql~~ir~~RRR~KNr 71 (92)
T 1skn_P 40 SLSELQQVLKNESLSEYQRQLIRKIRRRGKNK 71 (92)
T ss_dssp CHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhH
Confidence 56677888889999999987 55555555544
No 280
>3s8q_A R-M controller protein; protein-DNA complex, helix-turn-helix; HET: DNA; 2.10A {Enterobacter SP} SCOP: a.35.1.0 PDB: 3clc_A* 3ufd_A*
Probab=26.61 E-value=50 Score=20.16 Aligned_cols=23 Identities=22% Similarity=0.095 Sum_probs=19.4
Q ss_pred HHHHHHHhCCChHHHHHHhhcch
Q psy11996 40 RIEIAHALCLTERQIKIWFQNRR 62 (222)
Q Consensus 40 ~~~la~~~~l~~~~v~~WF~nrR 62 (222)
..+||..+|++...|..|-..++
T Consensus 27 q~~lA~~~gis~~~i~~~e~g~~ 49 (82)
T 3s8q_A 27 QEDLAYKSNLDRTYISGIERNSR 49 (82)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTCC
T ss_pred HHHHHHHhCcCHHHHHHHHCCCC
Confidence 56789999999999999986553
No 281
>2pij_A Prophage PFL 6 CRO; transcription factor, helix-turn-helix, structural evolution, transcription; 1.70A {Pseudomonas fluorescens}
Probab=26.55 E-value=51 Score=19.22 Aligned_cols=21 Identities=19% Similarity=0.234 Sum_probs=18.0
Q ss_pred HHHHHHHhCCChHHHHHHhhc
Q psy11996 40 RIEIAHALCLTERQIKIWFQN 60 (222)
Q Consensus 40 ~~~la~~~~l~~~~v~~WF~n 60 (222)
..++|..+|++...|..|..+
T Consensus 16 ~~~~A~~lgis~~~vs~~~~~ 36 (67)
T 2pij_A 16 QSALAAALGVNQSAISQMVRA 36 (67)
T ss_dssp HHHHHHHHTSCHHHHHHHHHT
T ss_pred HHHHHHHHCcCHHHHHHHHcC
Confidence 567899999999999999843
No 282
>1dtl_A Cardiac troponin C; helix-turn-helix, structural protein; HET: BEP; 2.15A {Gallus gallus} SCOP: a.39.1.5 PDB: 1j1d_A 1j1e_A 2jt3_A 2jt0_A 1la0_A 2jtz_A* 2jt8_A* 2kfx_T* 1wrk_A* 1wrl_A* 1ap4_A 1lxf_C* 1mxl_C 1spy_A 2krd_C* 2l1r_A* 3rv5_A* 2ctn_A 2kgb_C 2jxl_A ...
Probab=26.21 E-value=1.2e+02 Score=20.61 Aligned_cols=46 Identities=13% Similarity=0.165 Sum_probs=35.1
Q ss_pred CCCCCHHHHHHHHHHhhh------CCCCCHHHHHHHHHHhC--CChHHHHHHhh
Q psy11996 14 RTSYTRYQTLELEKEFHF------NRYLTRRRRIEIAHALC--LTERQIKIWFQ 59 (222)
Q Consensus 14 R~~~t~~q~~~L~~~f~~------~~~p~~~~~~~la~~~~--l~~~~v~~WF~ 59 (222)
-..++.+++..|...|.. +-+.+..+...+...+| ++...+..+|.
T Consensus 9 ~~~l~~~~~~~l~~~F~~~D~~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~ 62 (161)
T 1dtl_A 9 VEQLTEEQKNEFKAAFDIFVLGAEDGSISTKELGKVMRMLGQNPTPEELQEMID 62 (161)
T ss_dssp GGGSCHHHHHHHHHHHHHHTTTCGGGSBCHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred HhhCCHHHHHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 356899999999999843 44678888888888877 56777777763
No 283
>4ich_A Transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, transcription RE; 1.95A {Saccharomonospora viridis}
Probab=25.68 E-value=17 Score=28.94 Aligned_cols=39 Identities=18% Similarity=0.169 Sum_probs=28.2
Q ss_pred HHHHhhhhcCCCCHHHHHHHHHHcCCChhhHHHHHhhhhh
Q psy11996 148 ELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRM 187 (222)
Q Consensus 148 ~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nrR~ 187 (222)
.....|....|- ......||...|++..-|..+|.++-.
T Consensus 128 aa~~l~~~~G~~-~~T~~~IA~~AGvs~gtlY~yF~sKe~ 166 (311)
T 4ich_A 128 TAWRLIARRGYH-NVRIHDIASELGTSNATIHYHFPSKKD 166 (311)
T ss_dssp HHHHHHHHHCGG-GCCHHHHHHHHTCCHHHHHHHCSSHHH
T ss_pred HHHHHHHHcCCc-cCCHHHHHHHhCCCchhHHHhCCCHHH
Confidence 344446665543 245677899999999999999988743
No 284
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=25.51 E-value=57 Score=21.05 Aligned_cols=22 Identities=18% Similarity=0.256 Sum_probs=19.0
Q ss_pred HHHHHHHHhCCChHHHHHHhhc
Q psy11996 39 RRIEIAHALCLTERQIKIWFQN 60 (222)
Q Consensus 39 ~~~~la~~~~l~~~~v~~WF~n 60 (222)
...+||..+|+++..+...|+.
T Consensus 21 ~~~~lA~~~~~S~~~l~r~fk~ 42 (103)
T 3lsg_A 21 TLSVLSEKLDLSSGYLSIMFKK 42 (103)
T ss_dssp CHHHHHHHTTCCHHHHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHHHH
Confidence 4778999999999999998853
No 285
>1x57_A Endothelial differentiation-related factor 1; HMBF1alpha, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.35.1.12
Probab=25.51 E-value=51 Score=20.67 Aligned_cols=23 Identities=13% Similarity=0.134 Sum_probs=20.2
Q ss_pred HHHHHHHhCCChHHHHHHhhcch
Q psy11996 40 RIEIAHALCLTERQIKIWFQNRR 62 (222)
Q Consensus 40 ~~~la~~~~l~~~~v~~WF~nrR 62 (222)
..+||..+|++...|..|...++
T Consensus 29 q~~lA~~~gis~~~is~~e~g~~ 51 (91)
T 1x57_A 29 QKDLATKINEKPQVIADYESGRA 51 (91)
T ss_dssp HHHHHHHHTSCHHHHHHHHHTCS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 56799999999999999997765
No 286
>3jsj_A Putative TETR-family transcriptional regulator; DNA-binding, transcription regulation; 2.10A {Streptomyces avermitilis ma-4680}
Probab=25.50 E-value=34 Score=24.35 Aligned_cols=40 Identities=8% Similarity=-0.066 Sum_probs=31.6
Q ss_pred HHHHHHhhhhcCCCCHHHHHHHHHHcCCChhhHHHHHhhhhh
Q psy11996 146 TLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRM 187 (222)
Q Consensus 146 ~~~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nrR~ 187 (222)
+..-...|....|- .....||...|++..-|...|.++-.
T Consensus 15 l~aA~~lf~~~G~~--~t~~~IA~~aGvs~~tly~~F~sK~~ 54 (190)
T 3jsj_A 15 LEAAAALTYRDGVG--IGVEALCKAAGVSKRSMYQLFESKDE 54 (190)
T ss_dssp HHHHHHHHHHHCTT--CCHHHHHHHHTCCHHHHHHHCSCHHH
T ss_pred HHHHHHHHHHhCcc--ccHHHHHHHhCCCHHHHHHHcCCHHH
Confidence 44445567777766 67888999999999999999988743
No 287
>3fia_A Intersectin-1; EH 1 domain, NESG, structural genomics, PSI- 2, protein structure initiative, northeast structural genomics consortium; 1.45A {Homo sapiens} PDB: 2khn_A
Probab=25.24 E-value=1.4e+02 Score=20.49 Aligned_cols=45 Identities=16% Similarity=0.280 Sum_probs=34.5
Q ss_pred CCCCCCHHHHHHHHHHhhhCC----CCCHHHHHHHHHHhCCChHHHH-HH
Q psy11996 13 QRTSYTRYQTLELEKEFHFNR----YLTRRRRIEIAHALCLTERQIK-IW 57 (222)
Q Consensus 13 ~R~~~t~~q~~~L~~~f~~~~----~p~~~~~~~la~~~~l~~~~v~-~W 57 (222)
....+|+++...+++.|..-. +.+..+...+-...||+...+. +|
T Consensus 23 ~~W~it~ee~~~y~~iF~~lD~~dG~Isg~elr~~~~~sgLp~~~L~~Iw 72 (121)
T 3fia_A 23 DTWAITVEERAKHDQQFHSLKPISGFITGDQARNFFFQSGLPQPVLAQIW 72 (121)
T ss_dssp TTSCCCHHHHHHHHHHHHHTCCBTTBEEHHHHHHHHGGGCCCHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCCCeECHHHHHHHHHHcCCCHHHHHHHH
Confidence 456799999999999996533 5667777777677899988876 66
No 288
>3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA binding motif, transcriptional regulator, bacter antitoxin, Zn binding protein, transcription regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB: 3gn5_A* 3gn5_B* 2kz8_A
Probab=25.17 E-value=1e+02 Score=20.84 Aligned_cols=22 Identities=5% Similarity=-0.079 Sum_probs=17.3
Q ss_pred HHHHHHcCCChhhHHHHHhhhh
Q psy11996 165 IEIAHALCLTERQIKIWFQNRR 186 (222)
Q Consensus 165 ~~la~~l~l~~~~V~~WF~nrR 186 (222)
.+||..+|++...|..|-..++
T Consensus 88 ~~la~~~g~s~~~i~~~E~g~~ 109 (133)
T 3o9x_A 88 KEASEIFGGGVNAFSRYEKGNA 109 (133)
T ss_dssp HHHHHHHCSCTTHHHHHHHTSS
T ss_pred HHHHHHHCCCHHHHHHHHCCCC
Confidence 4668888888888888887654
No 289
>1t33_A Putative transcriptional repressor (TETR/ACRR FAM; structural genomics, TETR/CCRR FA helix turn helix DNA binding domain, PSI; 2.20A {Salmonella typhimurium} SCOP: a.4.1.9 a.121.1.1
Probab=25.15 E-value=31 Score=25.30 Aligned_cols=40 Identities=13% Similarity=0.030 Sum_probs=30.9
Q ss_pred HHHHHHhhhhcCCCCHHHHHHHHHHcCCChhhHHHHHhhhhh
Q psy11996 146 TLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRM 187 (222)
Q Consensus 146 ~~~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nrR~ 187 (222)
+......|....|- .....||...|++..-|..+|.++-.
T Consensus 18 l~aA~~lf~~~G~~--~s~~~IA~~agvs~~tiY~~F~sK~~ 57 (224)
T 1t33_A 18 IAAALAQFGEYGLH--ATTRDIAALAGQNIAAITYYFGSKED 57 (224)
T ss_dssp HHHHHHHHHHHGGG--SCHHHHHHHHTSCHHHHHHHHSSHHH
T ss_pred HHHHHHHHHHhCcc--ccHHHHHHHhCCCHHHHHHhcCCHHH
Confidence 33444557777665 67888999999999999999988743
No 290
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=25.11 E-value=1e+02 Score=21.55 Aligned_cols=40 Identities=8% Similarity=0.067 Sum_probs=31.2
Q ss_pred CCHHHHHHHHHHhhh----CCCCCHHHHHHHHHHhCCChHHHHHHhh
Q psy11996 17 YTRYQTLELEKEFHF----NRYLTRRRRIEIAHALCLTERQIKIWFQ 59 (222)
Q Consensus 17 ~t~~q~~~L~~~f~~----~~~p~~~~~~~la~~~~l~~~~v~~WF~ 59 (222)
+|..++..|...+.. +.+|+. +.||..+|++..+|....+
T Consensus 30 Ls~~E~~lLl~L~~~~~~g~~~ps~---~~LA~~~~~s~~~v~~~L~ 73 (135)
T 2v79_A 30 LNETELILLLKIKMHLEKGSYFPTP---NQLQEGMSISVEECTNRLR 73 (135)
T ss_dssp CCHHHHHHHHHHHHHHTTTCCSCCH---HHHHTTSSSCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhcCCCCCCH---HHHHHHHCcCHHHHHHHHH
Confidence 677788888777653 566775 4699999999999998875
No 291
>3qrx_A Centrin; calcium-binding, EF-hand, cell division, calcium binding, ME binding protein-toxin complex; 2.20A {Chlamydomonas reinhardtii} PDB: 2ggm_A 2ami_A 1zmz_A
Probab=25.10 E-value=1.3e+02 Score=20.59 Aligned_cols=49 Identities=20% Similarity=0.273 Sum_probs=33.7
Q ss_pred CCCCCCCCCHHHHHHHHHHhhh-----CCCCCHHHHHHHHHHhCC--ChHHHHHHh
Q psy11996 10 TKRQRTSYTRYQTLELEKEFHF-----NRYLTRRRRIEIAHALCL--TERQIKIWF 58 (222)
Q Consensus 10 ~~r~R~~~t~~q~~~L~~~f~~-----~~~p~~~~~~~la~~~~l--~~~~v~~WF 58 (222)
..+.+..++.+++..|...|.. +-+.+..+...+...+|+ +...|...|
T Consensus 15 ~~~~~~~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~~~~~~~~~~~~~~ 70 (169)
T 3qrx_A 15 QKKGRVGLTEEQKQEIREAFDLFDTDGSGTIDAKELKVAMRALGFEPKKEEIKKMI 70 (169)
T ss_dssp -----CCCCHHHHHHHHHHHHHHCTTCCSEECHHHHHHHHHHTSCCCCHHHHHHHH
T ss_pred ccccCCCCCHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 3455678999999999999844 346788888888888875 556666555
No 292
>2l49_A C protein; P2 bacteriophage, P2 C, direct repeats, DNA-binding protein, binding protein; NMR {Enterobacteria phage P2} PDB: 2xcj_A
Probab=24.91 E-value=53 Score=20.88 Aligned_cols=24 Identities=13% Similarity=0.151 Sum_probs=20.8
Q ss_pred HHHHHHHhCCChHHHHHHhhcchh
Q psy11996 40 RIEIAHALCLTERQIKIWFQNRRM 63 (222)
Q Consensus 40 ~~~la~~~~l~~~~v~~WF~nrR~ 63 (222)
..+||..+|++...|..|...++.
T Consensus 20 q~~lA~~~gis~~~is~~e~g~~~ 43 (99)
T 2l49_A 20 RQQLADLTGVPYGTLSYYESGRST 43 (99)
T ss_dssp HHHHHHHHCCCHHHHHHHTTTSSC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCCC
Confidence 567999999999999999987654
No 293
>2hku_A A putative transcriptional regulator; structural genomics, APC6040, TET rhodococcus SP. RHA1, PSI-2, protein structure initiative; HET: PG4; 2.00A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=24.88 E-value=37 Score=24.81 Aligned_cols=40 Identities=10% Similarity=0.057 Sum_probs=31.0
Q ss_pred HHHHHHhhhhcCCCCHHHHHHHHHHcCCChhhHHHHHhhhhh
Q psy11996 146 TLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRM 187 (222)
Q Consensus 146 ~~~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nrR~ 187 (222)
+......|.... .......||+..|++..-|..+|.++..
T Consensus 26 l~aA~~lf~~~G--~~~s~~~IA~~aGvs~~tlY~~F~sK~~ 65 (215)
T 2hku_A 26 FTAATELFLEHG--EGVPITQICAAAGAHPNQVTYYYGSKER 65 (215)
T ss_dssp HHHHHHHHHHHC--TTSCHHHHHHHHTCCHHHHHHHHSSHHH
T ss_pred HHHHHHHHHHhC--CCcCHHHHHHHhCCCHHHHHHHcCCHHH
Confidence 344445577666 6677888999999999999999988743
No 294
>2mys_B Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus gallus} SCOP: a.39.1.5 PDB: 1i84_U* 1m8q_B* 1mvw_B* 1o18_E* 1o19_B* 1o1a_B* 1o1b_B* 1o1c_B* 1o1d_B* 1o1e_B* 1o1f_B* 1o1g_B* 2w4a_B 2w4g_B 2w4h_B
Probab=24.35 E-value=1.6e+02 Score=20.09 Aligned_cols=44 Identities=7% Similarity=0.178 Sum_probs=33.8
Q ss_pred CCCHHHHHHHHHHhhh-----CCCCCHHHHHHHHHHhCC---ChHHHHHHhh
Q psy11996 16 SYTRYQTLELEKEFHF-----NRYLTRRRRIEIAHALCL---TERQIKIWFQ 59 (222)
Q Consensus 16 ~~t~~q~~~L~~~f~~-----~~~p~~~~~~~la~~~~l---~~~~v~~WF~ 59 (222)
.++.+++..|...|.. +-+.+..+...+...+|+ +..+|...|.
T Consensus 18 ~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~l~~ 69 (166)
T 2mys_B 18 MFDETEIEDFKEAFTVIDQNADGIIDKDDLRETFAAMGRLNVKNEELDAMIK 69 (166)
T ss_pred hCCHHHHHHHHHHHHHHCCCCCCcCCHHHHHHHHHHhCCCCCCHHHHHHHHH
Confidence 5789999999999843 446788888888887765 6677777774
No 295
>2hxi_A Putative transcriptional regulator; structural genomics, APC6293, TET streptomyces coelicolor A3(2), PSI-2; 1.70A {Streptomyces coelicolor}
Probab=24.17 E-value=66 Score=24.48 Aligned_cols=52 Identities=12% Similarity=0.030 Sum_probs=35.6
Q ss_pred CCCCCHHH-HHHHHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHhhcchhHHH
Q psy11996 14 RTSYTRYQ-TLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWK 66 (222)
Q Consensus 14 R~~~t~~q-~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WF~nrR~k~~ 66 (222)
|...+.++ +..-...|...-|- ......||+.+|++..-|..+|.+|-.-..
T Consensus 26 ~~~~tr~~Il~aA~~l~~~~G~~-~~s~~~IA~~aGvs~~tlY~hF~~K~~Ll~ 78 (241)
T 2hxi_A 26 RRRWSTEQILDAAAELLLAGDAE-TFSVRKLAASLGTDSSSLYRHFRNKTELLR 78 (241)
T ss_dssp --CCCHHHHHHHHHHHHSSSSCC-CCCHHHHHHHTTSCHHHHHHHTSSHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHhcCcc-cCCHHHHHHHhCcCHHHHHHHcCCHHHHHH
Confidence 44566654 34455557666553 344677899999999999999999866544
No 296
>2ewt_A BLDD, putative DNA-binding protein; the DNA-binding domain of BLDD; 1.81A {Streptomyces coelicolor}
Probab=24.10 E-value=61 Score=18.92 Aligned_cols=23 Identities=4% Similarity=-0.055 Sum_probs=19.3
Q ss_pred HHHHHHHhC--CChHHHHHHhhcch
Q psy11996 40 RIEIAHALC--LTERQIKIWFQNRR 62 (222)
Q Consensus 40 ~~~la~~~~--l~~~~v~~WF~nrR 62 (222)
..+||..+| ++...|..|-..++
T Consensus 24 q~~lA~~~g~~is~~~i~~~e~g~~ 48 (71)
T 2ewt_A 24 LHGVEEKSQGRWKAVVVGSYERGDR 48 (71)
T ss_dssp HHHHHHHTTTSSCHHHHHHHHHTCS
T ss_pred HHHHHHHHCCcCCHHHHHHHHCCCC
Confidence 567999999 99999999986553
No 297
>3j04_B Myosin regulatory light chain 2, smooth muscle MA isoform; phosphorylation, 2D crystalline arrays, myosin regulation, M light chains, structural protein; 20.00A {Gallus gallus}
Probab=24.05 E-value=1.5e+02 Score=19.60 Aligned_cols=43 Identities=9% Similarity=0.294 Sum_probs=31.7
Q ss_pred CCHHHHHHHHHHhhh-----CCCCCHHHHHHHHHHhCC--ChHHHHHHhh
Q psy11996 17 YTRYQTLELEKEFHF-----NRYLTRRRRIEIAHALCL--TERQIKIWFQ 59 (222)
Q Consensus 17 ~t~~q~~~L~~~f~~-----~~~p~~~~~~~la~~~~l--~~~~v~~WF~ 59 (222)
|+.+|+..|...|.. +-+.+..+...+...+|+ +..+|...|.
T Consensus 1 ls~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~ 50 (143)
T 3j04_B 1 FDQSQIQEFKEAFNMIDQNRDGFIDKEDLHDMLASMGKNPTDEYLEGMMS 50 (143)
T ss_dssp CCHHHHHHHHHHHTTTCSSCTTCCCHHHHHHHHHHTSCCCCHHHHHTTTT
T ss_pred CCHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 688999999999853 447888888888777764 5555665554
No 298
>2kgr_A Intersectin-1; structure, alternative splicing, calcium, cell junction, cell projection, coiled coil, endocytosis, membrane, phosphoprotein; NMR {Homo sapiens}
Probab=23.85 E-value=1e+02 Score=20.24 Aligned_cols=45 Identities=16% Similarity=0.127 Sum_probs=33.7
Q ss_pred CCCCHHHHHHHHHHhhh-----CCCCCHHHHHHHHHHhCCChHHHHHHhh
Q psy11996 15 TSYTRYQTLELEKEFHF-----NRYLTRRRRIEIAHALCLTERQIKIWFQ 59 (222)
Q Consensus 15 ~~~t~~q~~~L~~~f~~-----~~~p~~~~~~~la~~~~l~~~~v~~WF~ 59 (222)
..++.++...|...|.. +-+.+..+...+....+++...|..+|.
T Consensus 6 w~ls~~~~~~l~~~F~~~D~d~dG~I~~~El~~~l~~~~~~~~~~~~i~~ 55 (111)
T 2kgr_A 6 WAVPQSSRLKYRQLFNSHDKTMSGHLTGPQARTILMQSSLPQAQLASIWN 55 (111)
T ss_dssp SSSCHHHHHHHHHHHHTTSCSSCCEEEHHHHHHHHHTTCCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHhCCCCHHHHHHHHH
Confidence 46788899999988854 3367777777776677888888887763
No 299
>2q0o_A Probable transcriptional activator protein TRAR; helix-turn-helix, two-helix coiled coil; HET: LAE; 2.00A {Rhizobium SP}
Probab=23.84 E-value=1.5e+02 Score=22.34 Aligned_cols=45 Identities=13% Similarity=0.099 Sum_probs=33.3
Q ss_pred CCCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHhhcchhH
Q psy11996 14 RTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMK 64 (222)
Q Consensus 14 R~~~t~~q~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WF~nrR~k 64 (222)
...+|+.+..+|.-.++.. .-.++|..+|+++..|+....+-+.|
T Consensus 173 ~~~Lt~~e~~vl~~~~~g~------s~~eIa~~l~is~~tV~~~~~~~~~k 217 (236)
T 2q0o_A 173 KQMLSPREMLCLVWASKGK------TASVTANLTGINARTVQHYLDKARAK 217 (236)
T ss_dssp GGSCCHHHHHHHHHHHTTC------CHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHcCC------CHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 3468999999986654322 25678999999999999887655544
No 300
>3g1o_A Transcriptional regulatory repressor protein (TETR-family) EThr; TERT family, transcriptional repressor, DNA-binding; HET: RF1; 1.85A {Mycobacterium tuberculosis}
Probab=23.61 E-value=29 Score=26.38 Aligned_cols=41 Identities=7% Similarity=0.075 Sum_probs=29.6
Q ss_pred HHHHHHhhhhcCCCCHHHHHHHHHHcCCChhhHHHHHhhhhh
Q psy11996 146 TLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRM 187 (222)
Q Consensus 146 ~~~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nrR~ 187 (222)
+......|....|- ......||...|++..-|...|.++-.
T Consensus 49 l~AA~~lf~~~G~~-~~t~~~IA~~aGvs~~tlY~~F~sK~~ 89 (255)
T 3g1o_A 49 LATAENLLEDRPLA-DISVDDLAKGAGISRPTFYFYFPSKEA 89 (255)
T ss_dssp HHHHHHHHTTSCGG-GCCHHHHHHHHTCCHHHHHHHCSSHHH
T ss_pred HHHHHHHHHHcCCc-cCcHHHHHHHhCCCHHHHHHHcCCHHH
Confidence 34444556666542 345777899999999999999988743
No 301
>2ofy_A Putative XRE-family transcriptional regulator; transcription regulator, structural genomics, PS protein structure initiative; 1.70A {Rhodococcus SP} SCOP: a.35.1.3
Probab=23.21 E-value=62 Score=19.90 Aligned_cols=23 Identities=9% Similarity=0.095 Sum_probs=20.2
Q ss_pred HHHHHHHhCCChHHHHHHhhcch
Q psy11996 40 RIEIAHALCLTERQIKIWFQNRR 62 (222)
Q Consensus 40 ~~~la~~~~l~~~~v~~WF~nrR 62 (222)
..+||..+|++...|..|-..++
T Consensus 30 q~~lA~~~gis~~~is~~E~g~~ 52 (86)
T 2ofy_A 30 MVTVAFDAGISVETLRKIETGRI 52 (86)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTCC
T ss_pred HHHHHHHhCCCHHHHHHHHcCCC
Confidence 56899999999999999987665
No 302
>2v57_A TETR family transcriptional repressor LFRR; DNA-binding, transcription regulation; HET: PRL; 1.90A {Mycobacterium smegmatis} PDB: 2wgb_A
Probab=22.44 E-value=50 Score=23.37 Aligned_cols=39 Identities=10% Similarity=0.034 Sum_probs=30.0
Q ss_pred HHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHhhcchhHHH
Q psy11996 25 LEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWK 66 (222)
Q Consensus 25 L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WF~nrR~k~~ 66 (222)
-...|... .......+|+..|++..-|..+|.++-.-..
T Consensus 23 A~~lf~~~---~~~t~~~Ia~~agvs~~t~Y~~F~sK~~L~~ 61 (190)
T 2v57_A 23 AMLVLADH---PTAALGDIAAAAGVGRSTVHRYYPERTDLLR 61 (190)
T ss_dssp HHHHHTTC---TTCCHHHHHHHHTCCHHHHHHHCSSHHHHHH
T ss_pred HHHHHHHc---CCCCHHHHHHHhCCCHHHHHHHcCCHHHHHH
Confidence 34446665 5567788999999999999999999865533
No 303
>1l3l_A Transcriptional activator protein TRAR; helix-turn-helix DNA binding motif, alpha/beta/alpha sandwich; HET: LAE; 1.66A {Agrobacterium tumefaciens} SCOP: a.4.6.2 d.110.5.1 PDB: 1h0m_A*
Probab=22.38 E-value=1.9e+02 Score=21.66 Aligned_cols=45 Identities=9% Similarity=-0.063 Sum_probs=33.1
Q ss_pred CCCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHhhcchhH
Q psy11996 14 RTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMK 64 (222)
Q Consensus 14 R~~~t~~q~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WF~nrR~k 64 (222)
...+|+.+..+|.-..... .-.++|..+|+++..|+....+-+.|
T Consensus 171 ~~~Lt~~e~~vl~~~~~g~------s~~eIa~~l~is~~tV~~~~~~~~~k 215 (234)
T 1l3l_A 171 AAWLDPKEATYLRWIAVGK------TMEEIADVEGVKYNSVRVKLREAMKR 215 (234)
T ss_dssp CCCCCHHHHHHHHHHTTTC------CHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHcCC------CHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 3569999999986644222 35678999999999999887654444
No 304
>2ovk_B RLC, myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, contractIle protein; 2.60A {Todarodes pacificus} PDB: 2ekv_B 2ekw_B 2oy6_B* 3i5f_B* 3i5g_B 3i5h_B 3i5i_B
Probab=22.34 E-value=1.4e+02 Score=20.08 Aligned_cols=47 Identities=13% Similarity=0.295 Sum_probs=34.1
Q ss_pred CCCCCCHHHHHHHHHHhhh-----CCCCCHHHHHHHHHHhC--CChHHHHHHhh
Q psy11996 13 QRTSYTRYQTLELEKEFHF-----NRYLTRRRRIEIAHALC--LTERQIKIWFQ 59 (222)
Q Consensus 13 ~R~~~t~~q~~~L~~~f~~-----~~~p~~~~~~~la~~~~--l~~~~v~~WF~ 59 (222)
..+.++.+++..|...|.. +-+.+..+...+...+| ++..+|...|.
T Consensus 6 ~~~~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~ 59 (153)
T 2ovk_B 6 RRVKLSQRQMQELKEAFTMIDQDRDGFIGMEDLKDMFSSLGRVPPDDELNAMLK 59 (153)
T ss_dssp -CTTCCHHHHHHHHHHHHHHCCSTTTCCCHHHHHHHTTTTTSCCCHHHHHHHHH
T ss_pred ccCCCCHHHHHHHHHHHHHhCCCCCCeECHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 3578999999999999853 34778888777766666 55666666654
No 305
>2cw1_A SN4M; lambda CRO fold, de novo protein; NMR {Synthetic} SCOP: k.46.1.1
Probab=22.34 E-value=64 Score=19.52 Aligned_cols=22 Identities=23% Similarity=0.229 Sum_probs=18.5
Q ss_pred HHHHHHHHhCCChHHHHHHhhc
Q psy11996 39 RRIEIAHALCLTERQIKIWFQN 60 (222)
Q Consensus 39 ~~~~la~~~~l~~~~v~~WF~n 60 (222)
...++|+.+|++..-|..|-..
T Consensus 15 sq~~~A~~Lgvsq~aVS~~~~~ 36 (65)
T 2cw1_A 15 NQEYAARALGLSQKLIEEVLKR 36 (65)
T ss_dssp CHHHHHHHSSSCHHHHHHHHHT
T ss_pred CHHHHHHHhCCCHHHHHHHHHh
Confidence 3567899999999999999743
No 306
>3qp6_A CVIR transcriptional regulator; quorum sensing, agonist, antagonist, LUXR, acylated homoseri lactone, transcription factor; HET: HL6; 2.00A {Chromobacterium violaceum} PDB: 3qp5_A*
Probab=22.09 E-value=1.6e+02 Score=22.83 Aligned_cols=45 Identities=20% Similarity=0.099 Sum_probs=34.3
Q ss_pred CcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHcCCChhhHHHHHhhhhhhH
Q psy11996 139 TSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKW 189 (222)
Q Consensus 139 ~~~~~~q~~~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nrR~k~ 189 (222)
..+|+.+..+|.-..... ...++|..||++..-|+....+-+.|.
T Consensus 196 ~~Lt~re~~vl~~~~~G~------s~~eIA~~l~is~~TV~~~~~~~~~kl 240 (265)
T 3qp6_A 196 MPLSQREYDIFHWMSRGK------TNWEIATILNISERTVKFHVANVIRKL 240 (265)
T ss_dssp CCCCHHHHHHHHHHHTTC------CHHHHHHHHTSCHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHcCC------CHHHHHHHHCcCHHHHHHHHHHHHHHh
Confidence 468888888887764322 356789999999999999987765554
No 307
>3kz9_A SMCR; transcriptional regulator, quorum S DNA-binding, transcription regulation, transcription regula; HET: MSE; 2.10A {Vibrio vulnificus} PDB: 2pbx_A
Probab=22.05 E-value=46 Score=23.75 Aligned_cols=41 Identities=12% Similarity=-0.005 Sum_probs=30.4
Q ss_pred HHHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHhhcchhHH
Q psy11996 24 ELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKW 65 (222)
Q Consensus 24 ~L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WF~nrR~k~ 65 (222)
.....|....|-. .....||+..|++..-|...|.++-.-.
T Consensus 25 aa~~l~~~~G~~~-~s~~~Ia~~agvs~~t~Y~~F~sK~~L~ 65 (206)
T 3kz9_A 25 IALEVFARRGIGR-GGHADIAEIAQVSVATVFNYFPTREDLV 65 (206)
T ss_dssp HHHHHHHHSCCSS-CCHHHHHHHHTSCHHHHHHHCCSHHHHH
T ss_pred HHHHHHHhcCccc-ccHHHHHHHhCCCHHHHHHHcCCHHHHH
Confidence 3344477776543 3467789999999999999999985543
No 308
>2hxi_A Putative transcriptional regulator; structural genomics, APC6293, TET streptomyces coelicolor A3(2), PSI-2; 1.70A {Streptomyces coelicolor}
Probab=22.04 E-value=68 Score=24.40 Aligned_cols=50 Identities=12% Similarity=0.018 Sum_probs=33.4
Q ss_pred CCcCCHHH-HHHHHHhhhhcCCCCHHHHHHHHHHcCCChhhHHHHHhhhhhh
Q psy11996 138 RTSYTRYQ-TLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMK 188 (222)
Q Consensus 138 r~~~~~~q-~~~L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nrR~k 188 (222)
+...+.++ +..-...|....+- ...+..||..+|++..-|..+|.|+-.-
T Consensus 26 ~~~~tr~~Il~aA~~l~~~~G~~-~~s~~~IA~~aGvs~~tlY~hF~~K~~L 76 (241)
T 2hxi_A 26 RRRWSTEQILDAAAELLLAGDAE-TFSVRKLAASLGTDSSSLYRHFRNKTEL 76 (241)
T ss_dssp --CCCHHHHHHHHHHHHSSSSCC-CCCHHHHHHHTTSCHHHHHHHTSSHHHH
T ss_pred chhhHHHHHHHHHHHHHHhcCcc-cCCHHHHHHHhCcCHHHHHHHcCCHHHH
Confidence 33455553 34445556666543 3457788999999999999999987443
No 309
>2ppx_A AGR_C_3184P, uncharacterized protein ATU1735; HTH-motif, XRE-family, structural genomics, PSI-2, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: a.35.1.3
Probab=21.71 E-value=68 Score=20.58 Aligned_cols=23 Identities=17% Similarity=0.299 Sum_probs=19.2
Q ss_pred HHHHHHHhCCChHHHHHHhhcch
Q psy11996 40 RIEIAHALCLTERQIKIWFQNRR 62 (222)
Q Consensus 40 ~~~la~~~~l~~~~v~~WF~nrR 62 (222)
..+||..+|++...|..|-..++
T Consensus 46 q~elA~~lgvs~~~is~~E~G~~ 68 (99)
T 2ppx_A 46 QEEFSARYHIPLGTLRDWEQGRS 68 (99)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTSS
T ss_pred HHHHHHHhCcCHHHHHHHHcCCC
Confidence 56799999999999999976543
No 310
>1eh2_A EPS15; calcium binding, signaling domain, NPF binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6 PDB: 2jxc_A 1f8h_A 1ff1_A
Probab=21.67 E-value=1.8e+02 Score=19.07 Aligned_cols=43 Identities=9% Similarity=0.057 Sum_probs=29.6
Q ss_pred cCCHHHHHHHHHhhhh----cCCCCHHHHHHHHHHcCCChhhHHHHH
Q psy11996 140 SYTRYQTLELEKEFHF----NRYLTRRRRIEIAHALCLTERQIKIWF 182 (222)
Q Consensus 140 ~~~~~q~~~L~~~F~~----~~~p~~~~~~~la~~l~l~~~~V~~WF 182 (222)
.++.++...+...|.. +.+.+..+...+...+|++..+|...|
T Consensus 8 ~ls~~e~~~~~~~F~~~D~~dG~Is~~el~~~l~~~gl~~~el~~i~ 54 (106)
T 1eh2_A 8 AVKPEDKAKYDAIFDSLSPVNGFLSGDKVKPVLLNSKLPVDILGRVW 54 (106)
T ss_dssp SSCHHHHHHHHHHHTTSCCSSSCCBHHHHHHHHHTTTCCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCCCCeEcHHHHHHHHHHcCCCHHHHHHHH
Confidence 3567777888777753 445677777777777777777666655
No 311
>2mys_C Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus gallus} SCOP: a.39.1.5 PDB: 1m8q_C* 1mvw_C* 1o18_F* 1o19_C* 1o1a_C* 1o1b_C* 1o1c_C* 1o1d_C* 1o1e_C* 1o1f_C* 1o1g_C*
Probab=21.27 E-value=1.8e+02 Score=19.09 Aligned_cols=43 Identities=19% Similarity=0.272 Sum_probs=31.3
Q ss_pred CCHHHHHHHHHHhhh-----CCCCCHHHHHHHHHHhC--CChHHHHHHhh
Q psy11996 17 YTRYQTLELEKEFHF-----NRYLTRRRRIEIAHALC--LTERQIKIWFQ 59 (222)
Q Consensus 17 ~t~~q~~~L~~~f~~-----~~~p~~~~~~~la~~~~--l~~~~v~~WF~ 59 (222)
++++++..|...|.. +-+.+..+...+...+| ++..++...|.
T Consensus 2 l~~~~~~~l~~~F~~~D~~~~G~i~~~el~~~l~~~~~~~~~~~~~~l~~ 51 (149)
T 2mys_C 2 FSKAAADDFKEAFLLFDRTGDAKITASQVGDIARALGQNPTNAEINKILG 51 (149)
T ss_pred CCHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 678899999999843 34678888888777776 45667776663
No 312
>3op9_A PLI0006 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, transcription regulat; HET: MSE; 1.90A {Listeria innocua}
Probab=21.26 E-value=66 Score=21.14 Aligned_cols=23 Identities=17% Similarity=0.328 Sum_probs=20.0
Q ss_pred HHHHHHHhCCChHHHHHHhhcch
Q psy11996 40 RIEIAHALCLTERQIKIWFQNRR 62 (222)
Q Consensus 40 ~~~la~~~~l~~~~v~~WF~nrR 62 (222)
..+||..+|++...|..|-.+++
T Consensus 25 q~~lA~~~gis~~~i~~~e~g~~ 47 (114)
T 3op9_A 25 NHQIAELLNVQTRTVAYYMSGET 47 (114)
T ss_dssp HHHHHHHHTSCHHHHHHHHHTSS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 56799999999999999987654
No 313
>1mij_A Protein prospero; homeodomain, DNA-binding domain, prospero domain, 4-helix bundle, transcription; HET: MSE; 2.05A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1xpx_A
Probab=21.07 E-value=1.8e+02 Score=20.54 Aligned_cols=49 Identities=18% Similarity=0.232 Sum_probs=35.7
Q ss_pred CcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHcCC---ChhhHHHHHhhhhh
Q psy11996 139 TSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCL---TERQIKIWFQNRRM 187 (222)
Q Consensus 139 ~~~~~~q~~~L~~~F~~~~~p~~~~~~~la~~l~l---~~~~V~~WF~nrR~ 187 (222)
+.+|+.-+..-+-.|--..||+.......---... ...|+--||.|=|-
T Consensus 2 ~~Ltp~HLkKAKLMFfytRYPsS~~LK~yFpDvkFnr~~TsQLiKWFSNFRE 53 (152)
T 1mij_A 2 STLTPMHLRKAKLMFFWVRYPSSAVLKMYFPDIKFNKNNTAQLVKWFSNFRE 53 (152)
T ss_dssp CCCCHHHHHHHHHHTTTCSSCCHHHHHHHCTTSCCCHHHHHHHHHHHHHHHH
T ss_pred CCCChHHHHhhhhheeeecCCcHHHHHHhCCchhhhhhhHHHHHHHHHhhHH
Confidence 45778888888888999999998766553333333 24688999999774
No 314
>1aih_A HP1 integrase; DNA integration, recombination; 2.50A {Haemophilus phage HP1} SCOP: d.163.1.1
Probab=21.03 E-value=2.1e+02 Score=19.75 Aligned_cols=43 Identities=12% Similarity=-0.066 Sum_probs=33.0
Q ss_pred CCCCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChHHHH
Q psy11996 13 QRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIK 55 (222)
Q Consensus 13 ~R~~~t~~q~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~ 55 (222)
.+..+|.+++..|.+.+.....+.....-.|+..+|+-..+|.
T Consensus 3 ~~~~lt~~e~~~l~~~~~~~~~~~~~~~~~l~~~tG~R~~E~~ 45 (170)
T 1aih_A 3 ELAFLYERDIYRLLAECDNSRNPDLGLIVRICLATGARWSEAE 45 (170)
T ss_dssp CCCCCCHHHHHHHHHHHTTSSSTTHHHHHHHHHHHCCCHHHHH
T ss_pred ccccCCHHHHHHHHHHHhcccchhHHHHHHHHHHhCCcHHHHH
Confidence 4567999999999998877665555556677888888877765
No 315
>3g7r_A Putative transcriptional regulator; TETR, all-helical, structural genomics, PSI-2, protein structure initiative; 1.38A {Streptomyces coelicolor A3}
Probab=21.03 E-value=35 Score=25.23 Aligned_cols=37 Identities=11% Similarity=0.014 Sum_probs=27.7
Q ss_pred HHHhhhhcCCCCHHHHHHHHHHcCCChhhHHHHHhhhh
Q psy11996 149 LEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRR 186 (222)
Q Consensus 149 L~~~F~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nrR 186 (222)
-...|....|- ......||...|++..-|..+|.|+-
T Consensus 44 A~~lf~~~G~~-~~t~~~IA~~AGvs~~tlY~~F~sKe 80 (221)
T 3g7r_A 44 ATRIFYAEGIH-SVGIDRITAEAQVTRATLYRHFSGKD 80 (221)
T ss_dssp HHHHHHHHCST-TSCHHHHHHHHTCCHHHHHHHCSSHH
T ss_pred HHHHHHHhCcc-cCCHHHHHHHhCCCHHHHHHHCCCHH
Confidence 33446666543 33577789999999999999998874
No 316
>2kn2_A Calmodulin; S MAPK phosphatase 1, NTMKP1, tobacco MKP1, metal binding Pro; NMR {Glycine max}
Probab=20.71 E-value=1.5e+02 Score=17.96 Aligned_cols=42 Identities=19% Similarity=0.283 Sum_probs=28.4
Q ss_pred CHHHHHHHHHHh---hh--CCCCCHHHHHHHHHHhC--CChHHHHHHhh
Q psy11996 18 TRYQTLELEKEF---HF--NRYLTRRRRIEIAHALC--LTERQIKIWFQ 59 (222)
Q Consensus 18 t~~q~~~L~~~f---~~--~~~p~~~~~~~la~~~~--l~~~~v~~WF~ 59 (222)
+..+...|...| +. +-+.+..+...+...+| ++..+|...|.
T Consensus 4 ~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~l~~ 52 (92)
T 2kn2_A 4 DTDAEEELKEAFKVFDKDQNGYISASELRHVMINLGEKLTDEEVEQMIK 52 (92)
T ss_dssp CCHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHCCCCCCeEcHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 345566666666 33 33678888888888887 67777777663
No 317
>1iq3_A Ralbp1-interacting protein (partner of ralbp1); EF-hand domain, POB1 EH domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: a.39.1.6
Probab=20.51 E-value=40 Score=22.51 Aligned_cols=43 Identities=9% Similarity=0.060 Sum_probs=28.0
Q ss_pred cCCHHHHHHHHHhhhh-----cCCCCHHHHHHHHHHcCCChhhHHHHH
Q psy11996 140 SYTRYQTLELEKEFHF-----NRYLTRRRRIEIAHALCLTERQIKIWF 182 (222)
Q Consensus 140 ~~~~~q~~~L~~~F~~-----~~~p~~~~~~~la~~l~l~~~~V~~WF 182 (222)
.++.++...+...|.. +.+.+..+...+...+|++..+|..+|
T Consensus 15 ~ls~~~~~~~~~~F~~~D~d~dG~Is~~el~~~l~~~gl~~~el~~i~ 62 (110)
T 1iq3_A 15 RITEEQREYYVNQFRSLQPDPSSFISGSVAKNFFTKSKLSIPELSYIW 62 (110)
T ss_dssp CCSSSSHHHHHHHHHHHCCSSSSEEEHHHHHHHCCSSSCSSCCHHHHH
T ss_pred cCCHHHHHHHHHHHHHHCCCCCCeEcHHHHHHHHHHcCCCHHHHHHHH
Confidence 3455566667666642 345677777776667777777777665
No 318
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=20.49 E-value=84 Score=18.82 Aligned_cols=23 Identities=13% Similarity=0.059 Sum_probs=20.0
Q ss_pred HHHHHHHhCCChHHHHHHhhcch
Q psy11996 40 RIEIAHALCLTERQIKIWFQNRR 62 (222)
Q Consensus 40 ~~~la~~~~l~~~~v~~WF~nrR 62 (222)
...||+.+|++...|..++.++.
T Consensus 3 ~~diA~~aGVS~sTVSrvLng~~ 25 (65)
T 1uxc_A 3 LDEIARLAGVSRTTASYVINGKA 25 (65)
T ss_dssp HHHHHHHHTSCHHHHHHHHHTCT
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 45789999999999999997765
No 319
>3u0k_A Rcamp; fluorescent protein, calcium binding, EF-hand, genetically E calcium indicator; HET: NFA CRK; 2.10A {Entacmaea quadricolor}
Probab=20.42 E-value=1.5e+02 Score=25.39 Aligned_cols=46 Identities=20% Similarity=0.213 Sum_probs=36.2
Q ss_pred CCcCCHHHHHHHHHhhh-----hcCCCCHHHHHHHHHHcCC--ChhhHHHHHh
Q psy11996 138 RTSYTRYQTLELEKEFH-----FNRYLTRRRRIEIAHALCL--TERQIKIWFQ 183 (222)
Q Consensus 138 r~~~~~~q~~~L~~~F~-----~~~~p~~~~~~~la~~l~l--~~~~V~~WF~ 183 (222)
+..++.+|+..|+..|. .+-+.+..+...+...+|+ +..+|..-|.
T Consensus 293 ~E~Lt~EEI~ELREaF~~fDkDgdG~IS~eELk~aLrsLG~~~TeeEI~~Lf~ 345 (440)
T 3u0k_A 293 RDQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMIN 345 (440)
T ss_dssp CBCCCHHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred HhhhhHHHHHHHHHHHHHHcCCCCCEECHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 55799999999999995 4667888888888788775 5667776663
No 320
>2rek_A Putative TETR-family transcriptional regulator; sulfur, SAD, structural genomics, PSI-2, protein structure initiative; 1.86A {Streptomyces coelicolor A3}
Probab=20.27 E-value=41 Score=24.18 Aligned_cols=42 Identities=14% Similarity=-0.007 Sum_probs=32.8
Q ss_pred HHHHHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHhhcchhHH
Q psy11996 22 TLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKW 65 (222)
Q Consensus 22 ~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WF~nrR~k~ 65 (222)
+......|...-| . .....+|+..|++..-|...|.++-.-.
T Consensus 22 l~aA~~lf~~~G~-~-~s~~~Ia~~agvs~~t~Y~~F~sK~~L~ 63 (199)
T 2rek_A 22 IEAAAAEVARHGA-D-ASLEEIARRAGVGSATLHRHFPSRWGLL 63 (199)
T ss_dssp HHHHHHHHHHHGG-G-CCHHHHHHHHTCCHHHHHHHCSSHHHHH
T ss_pred HHHHHHHHHhcCC-C-CCHHHHHHHhCCchHHHHHHCCCHHHHH
Confidence 3444555777777 5 5788899999999999999999985543
No 321
>3eus_A DNA-binding protein; structural genomics, PSI2,MCSG, protein structure initiative, midwest center for structural genomic binding; 1.80A {Silicibacter pomeroyi}
Probab=20.22 E-value=80 Score=19.61 Aligned_cols=23 Identities=13% Similarity=0.083 Sum_probs=19.5
Q ss_pred HHHHHHHhCCChHHHHHHhhcch
Q psy11996 40 RIEIAHALCLTERQIKIWFQNRR 62 (222)
Q Consensus 40 ~~~la~~~~l~~~~v~~WF~nrR 62 (222)
..+||..+|++...|..|-..++
T Consensus 30 q~elA~~~gis~~~is~~E~G~~ 52 (86)
T 3eus_A 30 QADLAERLDKPQSFVAKVETRER 52 (86)
T ss_dssp HHHHHHHTTCCHHHHHHHHTTSS
T ss_pred HHHHHHHhCcCHHHHHHHHCCCC
Confidence 56799999999999999986654
No 322
>3oio_A Transcriptional regulator (ARAC-type DNA-binding containing proteins); PSI-2, midwest center for structural genomics; 1.65A {Chromobacterium violaceum}
Probab=20.07 E-value=1.2e+02 Score=19.91 Aligned_cols=22 Identities=23% Similarity=0.283 Sum_probs=19.2
Q ss_pred HHHHHHHHHhCCChHHHHHHhh
Q psy11996 38 RRRIEIAHALCLTERQIKIWFQ 59 (222)
Q Consensus 38 ~~~~~la~~~~l~~~~v~~WF~ 59 (222)
...+.||..+|+++..+...|+
T Consensus 24 ~~~~~lA~~~~~S~~~l~r~fk 45 (113)
T 3oio_A 24 LSTDDIAYYVGVSRRQLERLFK 45 (113)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHHHHH
Confidence 4578899999999999998885
Done!