RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy11996
(222 letters)
>gnl|CDD|200956 pfam00046, Homeobox, Homeobox domain.
Length = 57
Score = 89.8 bits (224), Expect = 5e-24
Identities = 33/57 (57%), Positives = 42/57 (73%)
Query: 11 KRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKK 67
+R+RT++T Q ELEKEF NRY + R E+A L LTERQ+K+WFQNRR KWK+
Sbjct: 1 RRKRTTFTPEQLEELEKEFEKNRYPSAEEREELAKKLGLTERQVKVWFQNRRAKWKR 57
Score = 89.8 bits (224), Expect = 5e-24
Identities = 33/57 (57%), Positives = 42/57 (73%)
Query: 135 KRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKK 191
+R+RT++T Q ELEKEF NRY + R E+A L LTERQ+K+WFQNRR KWK+
Sbjct: 1 RRKRTTFTPEQLEELEKEFEKNRYPSAEEREELAKKLGLTERQVKVWFQNRRAKWKR 57
>gnl|CDD|197696 smart00389, HOX, Homeodomain. DNA-binding factors that are
involved in the transcriptional regulation of key
developmental processes.
Length = 57
Score = 78.4 bits (194), Expect = 1e-19
Identities = 33/57 (57%), Positives = 41/57 (71%)
Query: 10 TKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWK 66
+R+RTS+T Q ELEKEF N Y +R R E+A L L+ERQ+K+WFQNRR KWK
Sbjct: 1 KRRKRTSFTPEQLEELEKEFQKNPYPSREEREELAKKLGLSERQVKVWFQNRRAKWK 57
Score = 78.4 bits (194), Expect = 1e-19
Identities = 33/57 (57%), Positives = 41/57 (71%)
Query: 134 TKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWK 190
+R+RTS+T Q ELEKEF N Y +R R E+A L L+ERQ+K+WFQNRR KWK
Sbjct: 1 KRRKRTSFTPEQLEELEKEFQKNPYPSREEREELAKKLGLSERQVKVWFQNRRAKWK 57
>gnl|CDD|238039 cd00086, homeodomain, Homeodomain; DNA binding domains involved
in the transcriptional regulation of key eukaryotic
developmental processes; may bind to DNA as monomers or
as homo- and/or heterodimers, in a sequence-specific
manner.
Length = 59
Score = 78.1 bits (193), Expect = 2e-19
Identities = 33/59 (55%), Positives = 40/59 (67%)
Query: 11 KRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEH 69
+R+RT +T Q ELEKEF N Y +R R E+A L LTERQ+KIWFQNRR K K+
Sbjct: 1 RRKRTRFTPEQLEELEKEFEKNPYPSREEREELAKELGLTERQVKIWFQNRRAKLKRSE 59
Score = 78.1 bits (193), Expect = 2e-19
Identities = 33/59 (55%), Positives = 40/59 (67%)
Query: 135 KRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEH 193
+R+RT +T Q ELEKEF N Y +R R E+A L LTERQ+KIWFQNRR K K+
Sbjct: 1 RRKRTRFTPEQLEELEKEFEKNPYPSREEREELAKELGLTERQVKIWFQNRRAKLKRSE 59
>gnl|CDD|227863 COG5576, COG5576, Homeodomain-containing transcription factor
[Transcription].
Length = 156
Score = 48.2 bits (115), Expect = 3e-07
Identities = 24/58 (41%), Positives = 37/58 (63%), Gaps = 2/58 (3%)
Query: 11 KRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKE 68
KR+RT T Q + LE+EF N Y + RI+++ L + + ++IWFQN+R K KK+
Sbjct: 54 KRRRT--TDEQLMVLEREFEINPYPSSITRIKLSLLLNMPPKSVQIWFQNKRAKEKKK 109
Score = 48.2 bits (115), Expect = 3e-07
Identities = 24/58 (41%), Positives = 37/58 (63%), Gaps = 2/58 (3%)
Query: 135 KRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKE 192
KR+RT T Q + LE+EF N Y + RI+++ L + + ++IWFQN+R K KK+
Sbjct: 54 KRRRT--TDEQLMVLEREFEINPYPSSITRIKLSLLLNMPPKSVQIWFQNKRAKEKKK 109
>gnl|CDD|220535 pfam10037, MRP-S27, Mitochondrial 28S ribosomal protein S27.
Members of this family of small ribosomal proteins
possess one of three conserved blocks of sequence found
in proteins that stimulate the dissociation of guanine
nucleotides from G-proteins, leaving open the
possibility that MRP-S27 might be a functional partner
of GTP-binding ribosomal proteins.
Length = 417
Score = 28.6 bits (64), Expect = 2.9
Identities = 12/63 (19%), Positives = 26/63 (41%), Gaps = 5/63 (7%)
Query: 10 TKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHA--LCLTERQIKIWFQNRRMKWKK 67
+ + ++ Q L + L+ R+ L L E++ ++WF R W++
Sbjct: 340 GESFQEWRSKLQALA---KVESRSLLSVEERLPTIEKEDLELYEQRQQLWFFENRKLWQR 396
Query: 68 EHK 70
+ K
Sbjct: 397 KKK 399
Score = 28.6 bits (64), Expect = 2.9
Identities = 12/63 (19%), Positives = 26/63 (41%), Gaps = 5/63 (7%)
Query: 134 TKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHA--LCLTERQIKIWFQNRRMKWKK 191
+ + ++ Q L + L+ R+ L L E++ ++WF R W++
Sbjct: 340 GESFQEWRSKLQALA---KVESRSLLSVEERLPTIEKEDLELYEQRQQLWFFENRKLWQR 396
Query: 192 EHK 194
+ K
Sbjct: 397 KKK 399
>gnl|CDD|203350 pfam05920, Homeobox_KN, Homeobox KN domain. This is a homeobox
transcription factor KN domain conserved from fungi to
human and plants.
Length = 40
Score = 25.1 bits (56), Expect = 4.4
Identities = 11/32 (34%), Positives = 16/32 (50%)
Query: 32 NRYLTRRRRIEIAHALCLTERQIKIWFQNRRM 63
N Y + + E+A L+ +QI WF N R
Sbjct: 8 NPYPSEEEKSELARQTGLSRKQIDNWFINARR 39
Score = 25.1 bits (56), Expect = 4.4
Identities = 11/32 (34%), Positives = 16/32 (50%)
Query: 156 NRYLTRRRRIEIAHALCLTERQIKIWFQNRRM 187
N Y + + E+A L+ +QI WF N R
Sbjct: 8 NPYPSEEEKSELARQTGLSRKQIDNWFINARR 39
>gnl|CDD|227258 COG4921, COG4921, Uncharacterized protein conserved in archaea
[Function unknown].
Length = 131
Score = 26.7 bits (59), Expect = 6.6
Identities = 10/32 (31%), Positives = 16/32 (50%)
Query: 25 LEKEFHFNRYLTRRRRIEIAHALCLTERQIKI 56
L F + + R IE+AH L + R++ I
Sbjct: 93 LGAPFKYAETVAEREAIEMAHHLSYSVRRLLI 124
Score = 26.7 bits (59), Expect = 6.6
Identities = 10/32 (31%), Positives = 16/32 (50%)
Query: 149 LEKEFHFNRYLTRRRRIEIAHALCLTERQIKI 180
L F + + R IE+AH L + R++ I
Sbjct: 93 LGAPFKYAETVAEREAIEMAHHLSYSVRRLLI 124
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.322 0.132 0.415
Gapped
Lambda K H
0.267 0.0760 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 11,328,965
Number of extensions: 1018973
Number of successful extensions: 807
Number of sequences better than 10.0: 1
Number of HSP's gapped: 807
Number of HSP's successfully gapped: 19
Length of query: 222
Length of database: 10,937,602
Length adjustment: 93
Effective length of query: 129
Effective length of database: 6,812,680
Effective search space: 878835720
Effective search space used: 878835720
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 57 (25.7 bits)